Psyllid ID: psy282

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
Protein Sequence
MGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFLHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHLTHDIPGVPTH
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccEEEEccEEEccccHHHHHHHHHHcccEEEEEEcccccccccccEEccccccccccccEEEEEEEccccccccEEEEEcccccccccccEEEEEcccccccccccccccHHHHHHHHHHcccEEEEEEcccccccccccEEccccccccccccEEEEEEEccccccccEEEEEcccccccccccEEEEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHcccccEcccccccccEcccccccEcEEEEEEccccHHHHHHHHHHHccEEEEEcHHHcccccccEEcccccccccccccEEEEEEEEEEccccEEEEEEccEcccccEccEEEEEccccHHHccccccccHHHHHHHHHHHccEEEEEcHHHcccccccEEcccHHHHcHHHccEEEEEEEEEEEccEEEEEEEccEcccccEccEEEEEEcccccccccccccccc
Coil and Loop (DISEMBL)
mglesekdypyknangekfkcaydkskvklftgkdflhfngsETMKKILYkygplsvllnsdlihdyngtpirkndetcspydlGHAVLLVGygkqddipywlvrnswgpigpdegffkiergnnacgkdflhfngsETMKKILYkygplsvglnshlihfyngtpirkndetcspydlGHAVLLVGygkqddipywlvrnswgpigpdegfFKIEHTLRShlthdipgvpth
Flexible Loop (DISEMBL)
mglesekdypyknangekfkcaYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFLHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEHTLRShlthdipgvpth
Low Complexity Region (SEG)
MGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFLHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHLTHDIPGVPTH
Disordered region (IsUnstruct)
*****************KFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFLHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHLT*********
Disordered Region (DISOPRED)
MGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFLHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHLTHDIPGVPT*
Disordered Region (DISEMBL)
********YPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFLHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHLTHDIPGVPTH
Disordered Region (DISPRO)
MGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFLHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHLTHDIPGVPTH
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFLHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHLTHDIPGVPTH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	233	2.2.26 [Sep-21-2011]
Q8V5U0	367	Viral cathepsin OS=Heliot	N/A	N/A	0.515	0.326	0.335	1e-17
Q9UBX1	484	Cathepsin F OS=Homo sapie	yes	N/A	0.549	0.264	0.343	2e-17
P56203	371	Cathepsin W OS=Mus muscul	yes	N/A	0.536	0.336	0.331	3e-16
O10364	324	Viral cathepsin OS=Orgyia	N/A	N/A	0.510	0.367	0.333	4e-16
Q9VN93	614	Putative cysteine protein	yes	N/A	0.532	0.201	0.350	6e-16
Q6VTL7	324	Viral cathepsin OS=Choris	N/A	N/A	0.515	0.370	0.335	1e-15
Q91GE3	323	Viral cathepsin OS=Epiphy	N/A	N/A	0.515	0.371	0.359	1e-15
Q91CL9	324	Viral cathepsin OS=Anther	N/A	N/A	0.515	0.370	0.343	2e-15
Q9R013	462	Cathepsin F OS=Mus muscul	no	N/A	0.549	0.277	0.335	3e-15
Q91BH1	337	Viral cathepsin OS=Spodop	N/A	N/A	0.515	0.356	0.359	3e-15

>sp|Q8V5U0|CATV_NPVHZ Viral cathepsin OS=Heliothis zea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1

 Score = 90.1 bits (222), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 75/128 (58%), Gaps = 8/128 (6%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLH-FNGSETMKKILYKYGPLSVLLN 60
           G+E+E DYPY+   G +  C  D  K+ +     F +       +K+++Y  GP+++ ++
Sbjct: 235 GVETEADYPYQ---GSEQMCTLDNRKIAVKLNSCFKYDIRDENKLKELVYTTGPVAIAVD 291

Query: 61  SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
           +  I +Y    + +    C  YDL HAVLL+G+G ++++PYW+++NSWG    + GF ++
Sbjct: 292 AMDIINYRRGILNQ----CHIYDLNHAVLLIGWGIENNVPYWIIKNSWGEDWGENGFLRV 347

Query: 121 ERGNNACG 128
            R  NACG
Sbjct: 348 RRNVNACG 355

Cysteine protease that plays an essential role in host liquefaction to facilitate horizontal transmission of the virus. May participate in the degradation of foreign protein expressed by the baculovirus system.
Lepidoptera (taxid: 7088)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 5EC: 0

>sp|Q9UBX1|CATF_HUMAN Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 71/131 (54%), Gaps = 3/131 (2%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
           GLE+E DY Y+   G    C +   K K++           + +   L K GP+SV +N+
Sbjct: 350 GLETEDDYSYQ---GHMQSCNFSAEKAKVYINDSVELSQNEQKLAAWLAKRGPISVAINA 406

Query: 62  DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIE 121
             +  Y     R     CSP+ + HAVLLVGYG + D+P+W ++NSWG    ++G++ + 
Sbjct: 407 FGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGNRSDVPFWAIKNSWGTDWGEKGYYYLH 466

Query: 122 RGNNACGKDFL 132
           RG+ ACG + +
Sbjct: 467 RGSGACGVNTM 477

Thiol protease which is believed to participate in intracellular degradation and turnover of proteins. Has also been implicated in tumor invasion and metastasis.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 4

EC: 1

>sp|P56203|CATW_MOUSE Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=2

 Score = 85.5 bits (210), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 77/145 (53%), Gaps = 20/145 (13%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHF-NGSETMKKILYKYGPLSVLLN 60
           GL SEKDYP++  + +  +C   K K K+   +DF    N  + +   L  +GP++V +N
Sbjct: 206 GLASEKDYPFQ-GDRKPHRCLAKKYK-KVAWIQDFTMLSNNEQAIAHYLAVHGPITVTIN 263

Query: 61  SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDD-----------------IPYWL 103
             L+  Y    I+    +C P  + H+VLLVG+GK+ +                  PYW+
Sbjct: 264 MKLLQHYQKGVIKATPSSCDPRQVDHSVLLVGFGKEKEGMQTGTVLSHSRKRRHSSPYWI 323

Query: 104 VRNSWGPIGPDEGFFKIERGNNACG 128
           ++NSWG    ++G+F++ RGNN CG
Sbjct: 324 LKNSWGAHWGEKGYFRLYRGNNTCG 348

May have a specific function in the mechanism or regulation of T-cell cytolytic activity.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|O10364|CATV_NPVOP Viral cathepsin OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=VCATH PE=3 SV=1

 Score = 85.1 bits (209), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 80/129 (62%), Gaps = 10/129 (7%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSK--VKLFTGKDFLHFNGSETMKKILYKYGPLSVLL 59
           G++ E DYPY+ ANG+   C  + ++  V + + + ++     E +K +L   GP+ V +
Sbjct: 192 GVQMESDYPYETANGQ---CRINPNRFVVGVRSCRRYIVM-FEEKLKDLLRAVGPIPVAI 247

Query: 60  NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
           ++  I +Y    +R+    C+ + L HAVLLVGY  +++IPYW+++N+WG    ++G+F+
Sbjct: 248 DASDIVNYRRGIMRQ----CANHGLNHAVLLVGYAVENNIPYWILKNTWGTDWGEDGYFR 303

Query: 120 IERGNNACG 128
           +++  NACG
Sbjct: 304 VQQNINACG 312

Cysteine protease that plays an essential role in host liquefaction to facilitate horizontal transmission of the virus. May participate in the degradation of foreign protein expressed by the baculovirus system.

Orgyia pseudotsugata (taxid: 33414)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 5

EC: 0

>sp|Q9VN93|CPR1_DROME Putative cysteine proteinase CG12163 OS=Drosophila melanogaster GN=CG12163 PE=2 SV=2

 Score = 84.3 bits (207), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 76/134 (56%), Gaps = 10/134 (7%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSET-MKKILYKYGPLSVLLN 60
           GLE E +YPYK    +K +C ++++   +          G+ET M++ L   GP+S+ +N
Sbjct: 473 GLEYEAEYPYK---AKKNQCHFNRTLSHVQVAGFVDLPKGNETAMQEWLLANGPISIGIN 529

Query: 61  SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD------DIPYWLVRNSWGPIGPD 114
           ++ +  Y G         CS  +L H VL+VGYG  D       +PYW+V+NSWGP   +
Sbjct: 530 ANAMQFYRGGVSHPWKALCSKKNLDHGVLVVGYGVSDYPNFHKTLPYWIVKNSWGPRWGE 589

Query: 115 EGFFKIERGNNACG 128
           +G++++ RG+N CG
Sbjct: 590 QGYYRVYRGDNTCG 603

May have a role in autophagic cell death.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q6VTL7|CATV_NPVCD Viral cathepsin OS=Choristoneura fumiferana defective polyhedrosis virus GN=Vcath PE=3 SV=1

 Score = 83.6 bits (205), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/128 (33%), Positives = 76/128 (59%), Gaps = 8/128 (6%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLH-FNGSETMKKILYKYGPLSVLLN 60
           G+++E DYPY+  NG+   C  + +K  +   K + +     E +K +L   GPL V ++
Sbjct: 192 GIQAENDYPYEANNGD---CRLNAAKFVVKVKKCYRYVLMFEEKLKDLLRIVGPLPVAID 248

Query: 61  SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
           +  I +Y    IR     C+ + L HAVLLVGY  ++ +P+W+++N+WG    ++G+F++
Sbjct: 249 ASDIVNYKRGVIR----YCANHGLNHAVLLVGYAVENGVPFWILKNTWGTDWGEQGYFRV 304

Query: 121 ERGNNACG 128
           ++  NACG
Sbjct: 305 QQNINACG 312

Cysteine protease that plays an essential role in host liquefaction to facilitate horizontal transmission of the virus. May participate in the degradation of foreign protein expressed by the baculovirus system.

Lepidoptera (taxid: 7088)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 5

EC: 0

>sp|Q91GE3|CATV_NPVEP Viral cathepsin OS=Epiphyas postvittana nucleopolyhedrovirus GN=VCATH PE=3 SV=1

 Score = 83.2 bits (204), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 75/128 (58%), Gaps = 8/128 (6%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNG-SETMKKILYKYGPLSVLLN 60
           G++ E DYPY+++N     C  D +K  +   +   +     E +K +L   GP+ V ++
Sbjct: 191 GVQIENDYPYESSNN---YCRMDPTKFVVGVKQCNRYITIYEEKLKDVLRLAGPIPVAID 247

Query: 61  SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
           +  I +Y    I+     C+   L HAVLLVGYG ++++PYW+++NSWG    ++GFFKI
Sbjct: 248 ASDILNYEQGIIK----YCANNGLNHAVLLVGYGVENNVPYWILKNSWGTDWGEQGFFKI 303

Query: 121 ERGNNACG 128
           ++  NACG
Sbjct: 304 QQNVNACG 311

Cysteine protease that plays an essential role in host liquefaction to facilitate horizontal transmission of the virus. May participate in the degradation of foreign protein expressed by the baculovirus system.

Lepidoptera (taxid: 7088)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 5

EC: 0

>sp|Q91CL9|CATV_NPVAP Viral cathepsin OS=Antheraea pernyi nuclear polyhedrosis virus GN=VCATH PE=3 SV=1

 Score = 82.4 bits (202), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 74/128 (57%), Gaps = 8/128 (6%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN-GSETMKKILYKYGPLSVLLN 60
           G+++E DYPY+  NG    C  + +K  +   K + +     E +K +L   GP+ V ++
Sbjct: 192 GIQAENDYPYEANNG---PCRVNAAKFVVRVKKCYRYVTLFEEKLKDLLRIVGPIPVAID 248

Query: 61  SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
           +  I  Y    IR     C  + L HAVLLVGYG ++ IP+W+++N+WG    ++G+F++
Sbjct: 249 ASDIVGYKRGIIR----YCENHGLNHAVLLVGYGVENGIPFWILKNTWGADWGEQGYFRV 304

Query: 121 ERGNNACG 128
           ++  NACG
Sbjct: 305 QQNINACG 312

Cysteine protease that plays an essential role in host liquefaction to facilitate horizontal transmission of the virus. May participate in the degradation of foreign protein expressed by the baculovirus system.

Antheraea pernyi (taxid: 7119)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 5

EC: 0

>sp|Q9R013|CATF_MOUSE Cathepsin F OS=Mus musculus GN=Ctsf PE=2 SV=1

 Score = 82.4 bits (202), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 3/131 (2%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
           GLE+E DY Y+   G    C +     K++             +   L + GP+SV +N+
Sbjct: 328 GLETEDDYGYQ---GHVQTCNFSAQMAKVYINDSVELSRNENKIAAWLAQKGPISVAINA 384

Query: 62  DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIE 121
             +  Y           CSP+ + HAVLLVGYG + +IPYW ++NSWG    +EG++ + 
Sbjct: 385 FGMQFYRHGIAHPFRPLCSPWFIDHAVLLVGYGNRSNIPYWAIKNSWGSDWGEEGYYYLY 444

Query: 122 RGNNACGKDFL 132
           RG+ ACG + +
Sbjct: 445 RGSGACGVNTM 455

Thiol protease which is believed to participate in intracellular degradation and turnover of proteins. Has also been implicated in tumor invasion and metastasis.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 4

EC: 1

>sp|Q91BH1|CATV_NPVST Viral cathepsin OS=Spodoptera litura multicapsid nucleopolyhedrovirus GN=VCATH PE=3 SV=1

 Score = 82.0 bits (201), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/128 (35%), Positives = 69/128 (53%), Gaps = 8/128 (6%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLH-FNGSETMKKILYKYGPLSVLLN 60
           G+E E DYPY+   G ++ C    SK+ +     + +       + ++LYK GP++V ++
Sbjct: 205 GVEHEIDYPYQ---GIEYACRLAPSKLAVRLSHCYQYDLRDERKLLELLYKNGPIAVAID 261

Query: 61  SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
              I DY           C+   L HAVLLVGYG ++D PYW+ +NSWG    + G+F+ 
Sbjct: 262 CVDIIDYRSGIA----TVCNDNGLNHAVLLVGYGIENDTPYWIFKNSWGSNWGENGYFRA 317

Query: 121 ERGNNACG 128
            R  NACG
Sbjct: 318 RRNINACG 325

Cysteine protease that plays an essential role in host liquefaction to facilitate horizontal transmission of the virus. May participate in the degradation of foreign protein expressed by the baculovirus system.

Lepidoptera (taxid: 7088)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 5

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
339244637	317	cathepsin F [Trichinella spiralis] gi|31	0.609	0.447	0.326	1e-18
311247276	367	PREDICTED: cathepsin W-like [Sus scrofa]	0.536	0.340	0.381	2e-18
355681666	373	cathepsin W [Mustela putorius furo]	0.536	0.335	0.363	6e-18
156389068	276	predicted protein [Nematostella vectensi	0.532	0.449	0.377	7e-18
260234113	2676	cysteine proteinase inhibitor precursor	0.523	0.045	0.362	1e-17
156546466	1036	PREDICTED: hypothetical protein LOC10012	0.519	0.116	0.382	1e-17
67773370	321	cysteine protease 3 [Paragonimus westerm	0.527	0.383	0.414	3e-17
395544492	451	PREDICTED: cathepsin F [Sarcophilus harr	0.549	0.283	0.358	4e-17
124484383	369	cysteine proteinase precursor [Ipomoea n	0.583	0.368	0.386	1e-16
432091112	370	Cathepsin W [Myotis davidii]	0.532	0.335	0.351	1e-16

>gi|339244637|ref|XP_003378244.1| cathepsin F [Trichinella spiralis] gi|316972865|gb|EFV56511.1| cathepsin F [Trichinella spiralis]

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 84/150 (56%), Gaps = 8/150 (5%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
           G+++E DYPY   +G    C  +K K+K++     L      T+   LY++GP++V +N+
Sbjct: 141 GVQAESDYPYTGLHGS---CKLNKEKIKVYINDTVLLHKNETTIANYLYEHGPVAVRMNA 197

Query: 62  DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDI-----PYWLVRNSWGPIGPDEG 116
           D++  Y    I+    +C+P  L H   ++GYGK+  +     PYW+++NSWG    + G
Sbjct: 198 DILMLYRKGIIKPTKSSCNPNFLNHGATIIGYGKESWLHWWSNPYWIIKNSWGVDWGENG 257

Query: 117 FFKIERGNNACGKDFLHFNGSETMKKILYK 146
           +F++ RGN ACG + +  + SE     L+K
Sbjct: 258 YFRLYRGNEACGVNRMVTSMSEMQACNLFK 287

Source: Trichinella spiralis

Species: Trichinella spiralis

Genus: Trichinella

Family: Trichinellidae

Order: Trichocephalida

Class: Enoplea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|311247276|ref|XP_003122571.1| PREDICTED: cathepsin W-like [Sus scrofa]

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/139 (38%), Positives = 75/139 (53%), Gaps = 14/139 (10%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLN 60
           GL SE+DYPYK         A    KV     +DFL     E ++ + L   GP++V +N
Sbjct: 208 GLASEQDYPYKGTVKTHRCLAKQHRKVAWI--QDFLMLQFCEQSIARYLATEGPITVTIN 265

Query: 61  SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDD-----------IPYWLVRNSWG 109
           + L+  Y    IR    TC P+ + H+VLLVG+GK              IPYW+++NSWG
Sbjct: 266 AGLLQQYKRGVIRATPATCDPHLVNHSVLLVGFGKSKSVEGRRPRPGHSIPYWILKNSWG 325

Query: 110 PIGPDEGFFKIERGNNACG 128
           P   +EG+F++ RG+N CG
Sbjct: 326 PDWGEEGYFRLHRGSNTCG 344

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355681666|gb|AER96819.1| cathepsin W [Mustela putorius furo]

 Score = 97.1 bits (240), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 53/146 (36%), Positives = 80/146 (54%), Gaps = 21/146 (14%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHF-NGSETMKKILYKYGPLSVLLN 60
           GL SEKDYP++  + ++ KC     K K+   +DF+   N  +TM   L  +GP++V +N
Sbjct: 209 GLASEKDYPFR-GSLKRHKCLASNYK-KVAWIQDFIMLQNNEQTMANYLATHGPITVTIN 266

Query: 61  SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDD------------------IPYW 102
             L+  Y    I+    TC PY + H+VLLVG+GK +                   IPYW
Sbjct: 267 MKLLQQYKKGVIKATPATCDPYLVNHSVLLVGFGKTNSSERRRAKGGHFWPHPHRPIPYW 326

Query: 103 LVRNSWGPIGPDEGFFKIERGNNACG 128
           +++NSWG    +EG+F++ RG+N CG
Sbjct: 327 ILKNSWGAEWGEEGYFRLHRGSNTCG 352

Source: Mustela putorius furo

Species: Mustela putorius

Genus: Mustela

Family: Mustelidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|156389068|ref|XP_001634814.1| predicted protein [Nematostella vectensis] gi|156221901|gb|EDO42751.1| predicted protein [Nematostella vectensis]

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 48/127 (37%), Positives = 74/127 (58%), Gaps = 3/127 (2%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
           GLESE DYPYK A+    KC ++K++VK+      +     + +   L K GP+S+ +N+
Sbjct: 142 GLESESDYPYKGADS---KCKFNKAEVKVTINSSVVISKDEKEIAAWLAKNGPISIGINA 198

Query: 62  DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIE 121
           + +  Y G         C+P  L H VL+VGYG ++  PYW+++NSWGP   ++G++ I 
Sbjct: 199 NAMQFYMGGIAHPWKIFCNPSSLNHGVLIVGYGVKNGTPYWIIKNSWGPSWGEKGYYLIY 258

Query: 122 RGNNACG 128
           RG   CG
Sbjct: 259 RGGGCCG 265

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|260234113|dbj|BAI44279.1| cysteine proteinase inhibitor precursor [Manduca sexta] gi|261336196|dbj|BAH59606.2| cysteine proteinase inhibitor precursor [Manduca sexta]

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 49/135 (36%), Positives = 82/135 (60%), Gaps = 13/135 (9%)

Query: 2    GLESEKDYPYKNANGEKFKCAYDKSKVKL-FTGKDFLHFNGSET-MKKILYKYGPLSVLL 59
            GLESE DYPY+   G   KC+++K+  ++  +G   ++   +ET M K L K+GP+S+ +
Sbjct: 2537 GLESEDDYPYE---GSDDKCSFNKTLARVQISGA--VNITSNETDMAKWLVKHGPISIGI 2591

Query: 60   NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD------DIPYWLVRNSWGPIGP 113
            N++ +  Y G         C+P +L H VL+VGYG +D       +PYW+++NSWG    
Sbjct: 2592 NANAMQFYMGGISHPWRMLCNPSNLDHGVLIVGYGAKDYPLFHKHLPYWIIKNSWGTSWG 2651

Query: 114  DEGFFKIERGNNACG 128
            ++G++++ RG+  CG
Sbjct: 2652 EQGYYRVYRGDGTCG 2666

Source: Manduca sexta

Species: Manduca sexta

Genus: Manduca

Family: Sphingidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156546466|ref|XP_001607324.1| PREDICTED: hypothetical protein LOC100123649 [Nasonia vitripennis]

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 52/136 (38%), Positives = 80/136 (58%), Gaps = 15/136 (11%)

Query: 2    GLESEKDYPYKNANGEKFKCAYDKSKVK--LFTGKDFLHFNGSET-MKKILYKYGPLSVL 58
            GLE E DYPY   + E  KC ++K+KVK  + +G   L+   +ET M + L K GP+S+ 
Sbjct: 896  GLELESDYPY---DAEDEKCHFNKNKVKVNIVSG---LNITSNETQMAQWLVKNGPMSIG 949

Query: 59   LNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ------DDIPYWLVRNSWGPIG 112
            +N++ +  Y G         CSP  L H VL+VGYG +        +PYW+++NSWGP  
Sbjct: 950  INANAMQFYMGGVSHPFKFLCSPDSLDHGVLIVGYGVKFYPIFKKTMPYWIIKNSWGPRW 1009

Query: 113  PDEGFFKIERGNNACG 128
             ++G++++ RG+  CG
Sbjct: 1010 GEQGYYRVYRGDGTCG 1025

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|67773370|gb|AAY81942.1| cysteine protease 3 [Paragonimus westermani]

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 53/128 (41%), Positives = 75/128 (58%), Gaps = 5/128 (3%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKI-LYKYGPLSVLLN 60
           GLES+ DYPY    G K +C  +K ++ L    D +    SE      L ++GPLS LLN
Sbjct: 187 GLESQDDYPYA---GVKEQCFMEKERL-LAKIDDSIALGPSEDDNAAYLAEHGPLSTLLN 242

Query: 61  SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
           +  +  Y    I  + E CSP DL HAVL VGY K+ D+PYW+++NSW     ++G+F++
Sbjct: 243 AITLQYYQSGIIHPSYEECSPVDLNHAVLTVGYDKEGDMPYWIIKNSWNVEWGEKGYFRL 302

Query: 121 ERGNNACG 128
            RG+  CG
Sbjct: 303 YRGDGTCG 310

Source: Paragonimus westermani

Species: Paragonimus westermani

Genus: Paragonimus

Family: Paragonimidae

Order: Plagiorchiida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|395544492|ref|XP_003774144.1| PREDICTED: cathepsin F [Sarcophilus harrisii]

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 73/131 (55%), Gaps = 3/131 (2%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
           GLE+EKDY Y+   G K +C++   K +++           E +   L + GP+S+ LN+
Sbjct: 317 GLETEKDYSYE---GRKERCSFSPDKARVYINSSVDLSRDEEELATWLAENGPVSIALNA 373

Query: 62  DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIE 121
             +  Y           CSP+ + HAVLLVGYG +  IP+W ++NSWGP   +EG++ + 
Sbjct: 374 FAMQFYRRGVSHPFRPLCSPWFIDHAVLLVGYGHRSGIPFWAIKNSWGPDWGEEGYYYLY 433

Query: 122 RGNNACGKDFL 132
           RG  ACG + +
Sbjct: 434 RGARACGVNAM 444

Source: Sarcophilus harrisii

Species: Sarcophilus harrisii

Genus: Sarcophilus

Family: Dasyuridae

Order: Dasyuromorphia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|124484383|dbj|BAF46302.1| cysteine proteinase precursor [Ipomoea nil]

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/150 (38%), Positives = 78/150 (52%), Gaps = 14/150 (9%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
           GLE EKDYPY   +G    C +DKSK+        +     + +   L K+GPLSV +N+
Sbjct: 225 GLEKEKDYPYTGKDG---TCKFDKSKIAAAVANFSVVSLDEDQIAANLVKHGPLSVGINA 281

Query: 62  DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ-------DDIPYWLVRNSWGPIGPD 114
             +  Y G         CS  +L H VLLVGYG          D PYW+V+NSWG    +
Sbjct: 282 VFMQTYIGGV--SCPYICSKRNLDHGVLLVGYGAAGYAPIRFKDKPYWIVKNSWGENWGE 339

Query: 115 EGFFKIERGNNACGKDFL--HFNGSETMKK 142
           EG++KI RGNN CG D +      + T+K+
Sbjct: 340 EGYYKICRGNNICGIDSMVSTVTAASTIKQ 369

Source: Ipomoea nil

Species: Ipomoea nil

Genus: Ipomoea

Family: Convolvulaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|432091112|gb|ELK24324.1| Cathepsin W [Myotis davidii]

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 51/145 (35%), Positives = 78/145 (53%), Gaps = 21/145 (14%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSET-MKKILYKYGPLSVLLN 60
           GL SEKDYP++ A   + KC   K K K+   +DF+  + +E  +   L   GP++V +N
Sbjct: 208 GLASEKDYPFQGA--VRAKCQAKKHK-KVAWIQDFIMLSDNEQRIAWYLATEGPITVTIN 264

Query: 61  SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDI-----------------PYWL 103
             L+  Y    I+    TC P ++ H VLLVG+GK   +                 PYW+
Sbjct: 265 KKLLQQYQNGVIKATQTTCDPQNVDHVVLLVGFGKTKSVEGRQAKGVPGHSRRRSTPYWI 324

Query: 104 VRNSWGPIGPDEGFFKIERGNNACG 128
           ++NSWG    ++G+F++ RG+NACG
Sbjct: 325 LKNSWGANWGEKGYFRLHRGSNACG 349

Source: Myotis davidii

Species: Myotis davidii

Genus: Myotis

Family: Vespertilionidae

Order: Chiroptera

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
UNIPROTKB|F1RU23	367	CTSW "Uncharacterized protein"	0.536	0.340	0.374	4.5e-20
UNIPROTKB|F1MHV4	375	CTSW "Uncharacterized protein"	0.394	0.245	0.389	1.5e-18
UNIPROTKB|Q9UBX1	484	CTSF "Cathepsin F" [Homo sapie	0.532	0.256	0.354	3.4e-18
WB|WBGene00007055	477	tag-196 [Caenorhabditis elegan	0.527	0.257	0.390	4.2e-18
UNIPROTKB|F1P3U9	261	CTSH "Uncharacterized protein"	0.523	0.467	0.381	7.5e-18
UNIPROTKB|F6X9C1	305	CTSH "Uncharacterized protein"	0.515	0.393	0.383	7.5e-18
UNIPROTKB|Q0VCU3	460	CTSF "Uncharacterized protein"	0.536	0.271	0.350	1.1e-17
UNIPROTKB|E2RR02	460	CTSF "Uncharacterized protein"	0.519	0.263	0.361	1.3e-17
ZFIN|ZDB-GENE-080724-8	334	ctso "cathepsin O" [Danio reri	0.519	0.362	0.375	1.5e-17
UNIPROTKB|E2QV47	136	CTSH "Uncharacterized protein"	0.497	0.852	0.387	3.2e-17

UNIPROTKB|F1RU23 CTSW "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 239 (89.2 bits), Expect = 4.5e-20, P = 4.5e-20
 Identities = 52/139 (37%), Positives = 79/139 (56%)

Query:     2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLN 60
             GL SE+DYPYK    +  +C   + + K+   +DFL     E ++ + L   GP++V +N
Sbjct:   208 GLASEQDYPYKGTV-KTHRCLAKQHR-KVAWIQDFLMLQFCEQSIARYLATEGPITVTIN 265

Query:    61 SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDD-----------IPYWLVRNSWG 109
             + L+  Y    IR    TC P+ + H+VLLVG+GK              IPYW+++NSWG
Sbjct:   266 AGLLQQYKRGVIRATPATCDPHLVNHSVLLVGFGKSKSVEGRRPRPGHSIPYWILKNSWG 325

Query:   110 PIGPDEGFFKIERGNNACG 128
             P   +EG+F++ RG+N CG
Sbjct:   326 PDWGEEGYFRLHRGSNTCG 344

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|F1MHV4 CTSW "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 162 (62.1 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
 Identities = 37/95 (38%), Positives = 54/95 (56%)

Query:     2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLN 60
             GL SEKDYP+ N +G+  +C   K K K+   +DF+     E +M + L   GP++V +N
Sbjct:   207 GLASEKDYPF-NGSGKTHRCLAKKYK-KVAWIQDFIILQACEQSMARHLATEGPITVTIN 264

Query:    61 SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGK 95
               L+  Y    I+    TC P  + H+VLLVG+GK
Sbjct:   265 MTLLQQYQKGVIKATPTTCDPTQVDHSVLLVGFGK 299

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|Q9UBX1 CTSF "Cathepsin F" [Homo sapiens (taxid:9606)]

 Score = 227 (85.0 bits), Expect = 3.4e-18, P = 3.4e-18
 Identities = 45/127 (35%), Positives = 69/127 (54%)

Query:     2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
             GLE+E DY Y+   G    C +   K K++           + +   L K GP+SV +N+
Sbjct:   350 GLETEDDYSYQ---GHMQSCNFSAEKAKVYINDSVELSQNEQKLAAWLAKRGPISVAINA 406

Query:    62 DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIE 121
               +  Y     R     CSP+ + HAVLLVGYG + D+P+W ++NSWG    ++G++ + 
Sbjct:   407 FGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGNRSDVPFWAIKNSWGTDWGEKGYYYLH 466

Query:   122 RGNNACG 128
             RG+ ACG
Sbjct:   467 RGSGACG 473

GO:0006508 "proteolysis" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=TAS

GO:0005764 "lysosome" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0043202 "lysosomal lumen" evidence=TAS

WB|WBGene00007055 tag-196 [Caenorhabditis elegans (taxid:6239)]

 Score = 226 (84.6 bits), Expect = 4.2e-18, P = 4.2e-18
 Identities = 50/128 (39%), Positives = 70/128 (54%)

Query:     2 GLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHFNGSETMKKILYKYGPLSVLLN 60
             GLE E  YPY +  GE   C   +  + ++  G   L  +  E M+K L   GP+S+ LN
Sbjct:   343 GLEPEDAYPY-DGRGET--CHLVRKDIAVYINGSVELPHDEVE-MQKWLVTKGPISIGLN 398

Query:    61 SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
             ++ +  Y    +      C P+ L H VL+VGYGK    PYW+V+NSWGP   + G+FK+
Sbjct:   399 ANTLQFYRHGVVHPFKIFCEPFMLNHGVLIVGYGKDGRKPYWIVKNSWGPNWGEAGYFKL 458

Query:   121 ERGNNACG 128
              RG N CG
Sbjct:   459 YRGKNVCG 466

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

UNIPROTKB|F1P3U9 CTSH "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 50/131 (38%), Positives = 70/131 (53%)

Query:     2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSET--MKKILYKYGPLSVL- 58
             GL  E  YPY+  NG    C +   K   F  KD ++    +   M + + K+ P+S   
Sbjct:   124 GLMGEDAYPYRAQNGT---CKFQPDKAIAFV-KDVINITQYDEAGMVEAVGKHNPVSFAF 179

Query:    59 -LNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF 117
              + SD +H   G       E  +P  + HAVL VGYG++D  PYW+V+NSWGP+   +G+
Sbjct:   180 EVTSDFMHYRKGVYSNPRCEH-TPDKVNHAVLAVGYGEEDGRPYWIVKNSWGPLWGMDGY 238

Query:   118 FKIERGNNACG 128
             F IERG N CG
Sbjct:   239 FLIERGKNMCG 249

GO:0001913 "T cell mediated cytotoxicity" evidence=IEA

GO:0002764 "immune response-regulating signaling pathway" evidence=IEA

GO:0004177 "aminopeptidase activity" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

GO:0010634 "positive regulation of epithelial cell migration" evidence=IEA

GO:0010813 "neuropeptide catabolic process" evidence=IEA

GO:0010815 "bradykinin catabolic process" evidence=IEA

GO:0016505 "apoptotic protease activator activity" evidence=IEA

GO:0030108 "HLA-A specific activating MHC class I receptor activity" evidence=IEA

GO:0031638 "zymogen activation" evidence=IEA

GO:0031648 "protein destabilization" evidence=IEA

GO:0032526 "response to retinoic acid" evidence=IEA

GO:0033619 "membrane protein proteolysis" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043129 "surfactant homeostasis" evidence=IEA

GO:0045766 "positive regulation of angiogenesis" evidence=IEA

GO:0060448 "dichotomous subdivision of terminal units involved in lung branching" evidence=IEA

GO:0070324 "thyroid hormone binding" evidence=IEA

GO:0070371 "ERK1 and ERK2 cascade" evidence=IEA

GO:0097067 "cellular response to thyroid hormone stimulus" evidence=IEA

GO:0097208 "alveolar lamellar body" evidence=IEA

UNIPROTKB|F6X9C1 CTSH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 51/133 (38%), Positives = 71/133 (53%)

Query:     2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHF--NGSETMKKILYKYGPLSVL- 58
             G+  E  YPYK  +G+   C Y  SK   F  KD  +   N  + M + +  Y P+S   
Sbjct:   168 GIMGEDSYPYKGQDGD---CKYQPSKAIAFV-KDVANITINDEQAMVEAVALYNPVSFAF 223

Query:    59 -LNSDLIHDYNGTPIRKNDETC--SPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDE 115
              + SD +    G     +  +C  +P  + HAVL VGYG+Q+ IPYW+V+NSWGP     
Sbjct:   224 EVTSDFMMYRKGI---YSSTSCHKTPDKVNHAVLAVGYGEQNGIPYWIVKNSWGPQWGMN 280

Query:   116 GFFKIERGNNACG 128
             G+F +ERG N CG
Sbjct:   281 GYFLMERGKNMCG 293

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|Q0VCU3 CTSF "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 222 (83.2 bits), Expect = 1.1e-17, P = 1.1e-17
 Identities = 47/134 (35%), Positives = 75/134 (55%)

Query:     2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
             GLE+E DY Y+   G    C++   K K++           + +   L K GP+S+ +N+
Sbjct:   326 GLETEDDYSYR---GRLQTCSFSAEKAKVYINDSVELSKNEQKLAAWLAKNGPVSIAINA 382

Query:    62 DLIHDY-NGT--PIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFF 118
               +  Y +G   P+R     CSP+ + HAVLLVGYG +  IP+W ++NSWG    +EG++
Sbjct:   383 FGMQFYRHGISHPLRP---LCSPWLIDHAVLLVGYGNRSAIPFWAIKNSWGTDWGEEGYY 439

Query:   119 KIERGNNACGKDFL 132
              + RG+ ACG + +
Sbjct:   440 YLHRGSGACGVNIM 453

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|E2RR02 CTSF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 221 (82.9 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 47/130 (36%), Positives = 73/130 (56%)

Query:     2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
             GLE+E DY Y+   G    C++   K +++           + +   L K GP+SV +N+
Sbjct:   326 GLETEDDYSYQ---GHLQACSFSAKKARVYINDSMELSQNEQKLAAWLAKKGPISVAINA 382

Query:    62 DLIHDY-NGT--PIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFF 118
               +  Y +G   P+R     CSP+ + HAVLLVGYG +  IP+W ++NSWG    +EG++
Sbjct:   383 FGMQFYRHGISHPLRP---LCSPWLIDHAVLLVGYGNRSGIPFWAIKNSWGTDWGEEGYY 439

Query:   119 KIERGNNACG 128
              + RG+ ACG
Sbjct:   440 YLHRGSGACG 449

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

ZFIN|ZDB-GENE-080724-8 ctso "cathepsin O" [Danio rerio (taxid:7955)]

 Score = 215 (80.7 bits), Expect = 1.5e-17, P = 1.5e-17
 Identities = 48/128 (37%), Positives = 72/128 (56%)

Query:     3 LESEKDYPYKNANG--EKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
             L SE +YP+K A+G  + F  A+    V+ ++  DF      E M   L  +GPL V+++
Sbjct:   202 LVSEAEYPFKGADGVCQFFPQAHAGVAVRNYSAYDFS--GQEEVMMSALVDFGPLVVIVD 259

Query:    61 SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
             +    DY G  I+ +   CS +   HAVL+ GY    ++PYW+VRNSWG    D+G+  I
Sbjct:   260 AISWQDYLGGIIQHH---CSSHKANHAVLITGYDTTGEVPYWIVRNSWGTSWGDDGYAYI 316

Query:   121 ERGNNACG 128
             + GN+ CG
Sbjct:   317 KIGNDVCG 324

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|E2QV47 CTSH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 50/129 (38%), Positives = 69/129 (53%)

Query:     6 EKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHF--NGSETMKKILYKYGPLSVL--LNS 61
             E  YPYK  +G+   C Y  SK   F  KD  +   N  + M + +  Y P+S    + S
Sbjct:     3 EDSYPYKGQDGD---CKYQPSKAIAFV-KDVANITINDEQAMVEAVALYNPVSFAFEVTS 58

Query:    62 DLIHDYNGTPIRKNDETC--SPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
             D +    G     +  +C  +P  + HAVL VGYG+Q+ IPYW+V+NSWGP     G+F 
Sbjct:    59 DFMMYRKGI---YSSTSCHKTPDKVNHAVLAVGYGEQNGIPYWIVKNSWGPQWGMNGYFL 115

Query:   120 IERGNNACG 128
             +ERG N CG
Sbjct:   116 MERGKNMCG 124

GO:0097208 "alveolar lamellar body" evidence=IEA

GO:0097067 "cellular response to thyroid hormone stimulus" evidence=IEA

GO:0070371 "ERK1 and ERK2 cascade" evidence=IEA

GO:0070324 "thyroid hormone binding" evidence=IEA

GO:0060448 "dichotomous subdivision of terminal units involved in lung branching" evidence=IEA

GO:0045766 "positive regulation of angiogenesis" evidence=IEA

GO:0043129 "surfactant homeostasis" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0033619 "membrane protein proteolysis" evidence=IEA

GO:0032526 "response to retinoic acid" evidence=IEA

GO:0031648 "protein destabilization" evidence=IEA

GO:0031638 "zymogen activation" evidence=IEA

GO:0030108 "HLA-A specific activating MHC class I receptor activity" evidence=IEA

GO:0016505 "apoptotic protease activator activity" evidence=IEA

GO:0010815 "bradykinin catabolic process" evidence=IEA

GO:0010813 "neuropeptide catabolic process" evidence=IEA

GO:0010634 "positive regulation of epithelial cell migration" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=IEA

GO:0004177 "aminopeptidase activity" evidence=IEA

GO:0002764 "immune response-regulating signaling pathway" evidence=IEA

GO:0001913 "T cell mediated cytotoxicity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	233
pfam00112	213	pfam00112, Peptidase_C1, Papain family cysteine pr	8e-34
cd02248	210	cd02248, Peptidase_C1A, Peptidase C1A subfamily (M	9e-34
cd02248	210	cd02248, Peptidase_C1A, Peptidase C1A subfamily (M	5e-22
pfam00112	213	pfam00112, Peptidase_C1, Papain family cysteine pr	5e-19
smart00645	175	smart00645, Pept_C1, Papain family cysteine protea	4e-17
cd02621	243	cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; al	4e-17
cd02620	236	cd02620, Peptidase_C1A_CathepsinB, Cathepsin B gro	7e-17
PTZ00203	348	PTZ00203, PTZ00203, cathepsin L protease; Provisio	2e-16
cd02619	223	cd02619, Peptidase_C1, C1 Peptidase family (MEROPS	6e-15
smart00645	175	smart00645, Pept_C1, Papain family cysteine protea	9e-14
cd02619	223	cd02619, Peptidase_C1, C1 Peptidase family (MEROPS	5e-13
cd02621	243	cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; al	5e-12
cd02620	236	cd02620, Peptidase_C1A_CathepsinB, Cathepsin B gro	4e-11
PTZ00200	448	PTZ00200, PTZ00200, cysteine proteinase; Provision	4e-11
PTZ00203	348	PTZ00203, PTZ00203, cathepsin L protease; Provisio	2e-10
cd02698	239	cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; th	5e-10
cd02698	239	cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; th	3e-09
PTZ00049	693	PTZ00049, PTZ00049, cathepsin C-like protein; Prov	1e-07
PTZ00021	489	PTZ00021, PTZ00021, falcipain-2; Provisional	1e-07
PTZ00462	1004	PTZ00462, PTZ00462, Serine-repeat antigen protein;	2e-07
PTZ00200	448	PTZ00200, PTZ00200, cysteine proteinase; Provision	2e-06
PTZ00462	1004	PTZ00462, PTZ00462, Serine-repeat antigen protein;	4e-06
PTZ00049	693	PTZ00049, PTZ00049, cathepsin C-like protein; Prov	2e-05
PTZ00364	548	PTZ00364, PTZ00364, dipeptidyl-peptidase I precurs	6e-05
PTZ00021	489	PTZ00021, PTZ00021, falcipain-2; Provisional	5e-04

>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease

 Score =  120 bits (303), Expect = 8e-34
 Identities = 49/131 (37%), Positives = 70/131 (53%), Gaps = 10/131 (7%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
           G+ +E DYPY   +G    C + KS  K    K +  + +N  E ++  L K GP+SV +
Sbjct: 80  GIVTESDYPYTAHDG---TCKFKKSNSKYAKIKGYGDVPYNDEEALQAALAKNGPVSVAI 136

Query: 60  N--SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF 117
           +   D    Y           CS   L HAVL+VGYG ++ +PYW+V+NSWG    + G+
Sbjct: 137 DAYEDDFQLYKSGVY--KHTECSGE-LDHAVLIVGYGTENGVPYWIVKNSWGTDWGENGY 193

Query: 118 FKIERGNNACG 128
           F+I RG N CG
Sbjct: 194 FRIARGVNECG 204

Length = 213

>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

 Score =  120 bits (303), Expect = 9e-34
 Identities = 53/129 (41%), Positives = 72/129 (55%), Gaps = 7/129 (5%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHFNGSETMKKILYKYGPLSVLLN 60
           GL SE DYPY   +G    C Y+ SKV    TG   +     E +K  L  YGP+SV ++
Sbjct: 79  GLASESDYPYTGKDG---TCKYNSSKVGAKITGYSNVPPGDEEALKAALANYGPVSVAID 135

Query: 61  -SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
            S     Y G     +   CS  +L HAVLLVGYG ++ + YW+V+NSWG    ++G+ +
Sbjct: 136 ASSSFQFYKGGIY--SGPCCSNTNLNHAVLLVGYGTENGVDYWIVKNSWGTSWGEKGYIR 193

Query: 120 IERGNNACG 128
           I RG+N CG
Sbjct: 194 IARGSNLCG 202

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to hatch or to evade the host immune system. Mammalian CPs are primarily lysosomal enzymes with the exception of cathepsin W, which is retained in the endoplasmic reticulum. They are responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. In addition to its inhibitory role, the propeptide is required for proper folding of the newly synthesized enzyme and its stabilization in denaturing pH conditions. Residues within the propeptide region also play a role in the transport of the proenzyme to lysosomes or acidified vesicles. Also included in this subfamily are proteins classified as non-peptidase homologs, which lack peptidase activity or have missing active site residues. Length = 210

>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

 Score = 89.6 bits (223), Expect = 5e-22
 Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 131 FLHFNGSETMKKILYKYGPLSVGLN-SHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG 189
            +     E +K  L  YGP+SV ++ S    FY G     +   CS  +L HAVLLVGYG
Sbjct: 111 NVPPGDEEALKAALANYGPVSVAIDASSSFQFYKGGIY--SGPCCSNTNLNHAVLLVGYG 168

Query: 190 KQDDIPYWLVRNSWGPIGPDEGFFKI 215
            ++ + YW+V+NSWG    ++G+ +I
Sbjct: 169 TENGVDYWIVKNSWGTSWGEKGYIRI 194

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to hatch or to evade the host immune system. Mammalian CPs are primarily lysosomal enzymes with the exception of cathepsin W, which is retained in the endoplasmic reticulum. They are responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. In addition to its inhibitory role, the propeptide is required for proper folding of the newly synthesized enzyme and its stabilization in denaturing pH conditions. Residues within the propeptide region also play a role in the transport of the proenzyme to lysosomes or acidified vesicles. Also included in this subfamily are proteins classified as non-peptidase homologs, which lack peptidase activity or have missing active site residues. Length = 210

>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease

 Score = 81.8 bits (203), Expect = 5e-19
 Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 15/92 (16%)

Query: 132 LHFNGSETMKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVL 184
           + +N  E ++  L K GP+SV ++++   F       Y  T        CS   L HAVL
Sbjct: 114 VPYNDEEALQAALAKNGPVSVAIDAYEDDFQLYKSGVYKHTE-------CSGE-LDHAVL 165

Query: 185 LVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIE 216
           +VGYG ++ +PYW+V+NSWG    + G+F+I 
Sbjct: 166 IVGYGTENGVPYWIVKNSWGTDWGENGYFRIA 197

Length = 213

>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease

 Score = 75.7 bits (187), Expect = 4e-17
 Identities = 39/130 (30%), Positives = 50/130 (38%), Gaps = 47/130 (36%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
           GLE+E  YPY  +                    DF             YK G        
Sbjct: 81  GLETESCYPYTGSVAID--------------ASDFQF-----------YKSG-------- 107

Query: 62  DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ--DDIPYWLVRNSWGPIGPDEGFFK 119
                Y+          C    L HAVL+VGYG +  +   YW+V+NSWG    + G+F+
Sbjct: 108 ----IYDHP-------GCGSGTLDHAVLIVGYGTEVENGKDYWIVKNSWGTDWGENGYFR 156

Query: 120 IERG-NNACG 128
           I RG NN CG
Sbjct: 157 IARGKNNECG 166

Length = 175

>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access

 Score = 77.0 bits (190), Expect = 4e-17
 Identities = 46/146 (31%), Positives = 69/146 (47%), Gaps = 21/146 (14%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNG------SETMKKILYKYGPL 55
           G+ +E  +PY   +     C    S+ + +   D+ +  G       + MK  +Y+ GP+
Sbjct: 89  GIVTEDYFPYTADDDRP--CKASPSECRRYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPI 146

Query: 56  SVLL--NSDLIHDYNGT-PIRKNDETCS-------PYDL-GHAVLLVGYGKQDD--IPYW 102
            V     SD      G      NDE          P++L  HAVLLVG+G+ +     YW
Sbjct: 147 VVAFEVYSDFDFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYW 206

Query: 103 LVRNSWGPIGPDEGFFKIERGNNACG 128
           +V+NSWG    ++G+FKI RG N CG
Sbjct: 207 IVKNSWGSSWGEKGYFKIRRGTNECG 232

Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are associated with Papillon-Lefevre and Haim-Munk syndromes, rare diseases characterized by hyperkeratosis and early-onset periodontitis. Cathepsin C is widely expressed in many tissues with high levels in lung, kidney and placenta. It is also highly expressed in cytotoxic lymphocytes and mature myeloid cells. Length = 243

>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

 Score = 76.5 bits (189), Expect = 7e-17
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 6/111 (5%)

Query: 20  KCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSV--LLNSDLIHDYNGTPIRKNDE 77
            C     + K      +   +    + K +   GP+     +  D ++ Y     +    
Sbjct: 122 GCEKTYEEDKHKGKSAYSVPSDETDIMKEIMTNGPVQAAFTVYEDFLY-YKSGVYQH--- 177

Query: 78  TCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACG 128
           T      GHAV ++G+G ++ +PYWL  NSWG    + G+F+I RG+N CG
Sbjct: 178 TSGKQLGGHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRILRGSNECG 228

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane antibody-mediated interstitial nephritis. It plays a role in renal tubulogenesis and is defective in hereditary tubulointerstitial disorders. TIN-Ag is exclusively expressed in kidney tissues. . Length = 236

>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional

 Score = 76.7 bits (188), Expect = 2e-16
 Identities = 38/124 (30%), Positives = 63/124 (50%), Gaps = 5/124 (4%)

Query: 5   SEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLNSDL 63
           +EK YPY + NG+  +C+             ++    SE  M   L K GP+S+ +++  
Sbjct: 210 TEKSYPYVSGNGDVPECSNSSELAPGARIDGYVSMESSERVMAAWLAKNGPISIAVDASS 269

Query: 64  IHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG 123
              Y+   +     +C    L H VLLVGY    ++PYW+++NSWG    ++G+ ++  G
Sbjct: 270 FMSYHSGVL----TSCIGEQLNHGVLLVGYNMTGEVPYWVIKNSWGEDWGEKGYVRVTMG 325

Query: 124 NNAC 127
            NAC
Sbjct: 326 VNAC 329

Length = 348

>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)

 Score = 71.0 bits (174), Expect = 6e-15
 Identities = 32/127 (25%), Positives = 51/127 (40%), Gaps = 8/127 (6%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSV-- 57
           G+  E+DYPY   +  +   +           KD+  +  N  E +K+ L K GP+    
Sbjct: 83  GIPPEEDYPYGAESDGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGF 142

Query: 58  LLNSDLIHDYNG--TPIRKNDETCSPYDLGHAVLLVGYGKQ--DDIPYWLVRNSWGPIGP 113
            + S       G                 GHAV++VGY     +    ++V+NSWG    
Sbjct: 143 DVYSGFDRLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWG 202

Query: 114 DEGFFKI 120
           D G+ +I
Sbjct: 203 DNGYGRI 209

Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel structure with the active sites imbedded in the central channel. Some members of the C1 family are proteins classified as non-peptidase homologs which lack peptidase activity or have missing active site residues. Length = 223

>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease

 Score = 66.5 bits (163), Expect = 9e-14
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 5/73 (6%)

Query: 145 YKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ--DDIPYWLVRNS 202
           Y Y   SV +++    FY    I  +   C    L HAVL+VGYG +  +   YW+V+NS
Sbjct: 88  YPY-TGSVAIDASDFQFYKSG-IYDHPG-CGSGTLDHAVLIVGYGTEVENGKDYWIVKNS 144

Query: 203 WGPIGPDEGFFKI 215
           WG    + G+F+I
Sbjct: 145 WGTDWGENGYFRI 157

Length = 175

>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)

 Score = 65.6 bits (160), Expect = 5e-13
 Identities = 36/182 (19%), Positives = 57/182 (31%), Gaps = 15/182 (8%)

Query: 45  MKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLV 104
           +K    +Y  LS      L    N   +  N        L   + LV       IP    
Sbjct: 36  IKGGEDEYVDLSPQ---YLYICANDECLGINGSCDGGGPLSALLKLV---ALKGIPPEED 89

Query: 105 RNSWGPIGPDEGFFKIERGNNACGKDF---LHFNGSETMKKILYKYGPLSVGLNSHLIHF 161
                    +E   +               +  N  E +K+ L K GP+  G + +    
Sbjct: 90  YPYGAESDGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVYSGFD 149

Query: 162 Y----NGTPIRKNDETCSPYDLGHAVLLVGYGKQ--DDIPYWLVRNSWGPIGPDEGFFKI 215
                                 GHAV++VGY     +    ++V+NSWG    D G+ +I
Sbjct: 150 RLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRI 209

Query: 216 EH 217
            +
Sbjct: 210 SY 211

Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel structure with the active sites imbedded in the central channel. Some members of the C1 family are proteins classified as non-peptidase homologs which lack peptidase activity or have missing active site residues. Length = 223

>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access

 Score = 63.2 bits (154), Expect = 5e-12
 Identities = 32/89 (35%), Positives = 46/89 (51%), Gaps = 13/89 (14%)

Query: 140 MKKILYKYGPLSVGL--NSHLIHFYNGT-PIRKNDETCS-------PYDL-GHAVLLVGY 188
           MK  +Y+ GP+ V     S    +  G      NDE          P++L  HAVLLVG+
Sbjct: 136 MKWEIYRNGPIVVAFEVYSDFDFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGW 195

Query: 189 GKQDD--IPYWLVRNSWGPIGPDEGFFKI 215
           G+ +     YW+V+NSWG    ++G+FKI
Sbjct: 196 GEDEIKGEKYWIVKNSWGSSWGEKGYFKI 224

Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are associated with Papillon-Lefevre and Haim-Munk syndromes, rare diseases characterized by hyperkeratosis and early-onset periodontitis. Cathepsin C is widely expressed in many tissues with high levels in lung, kidney and placenta. It is also highly expressed in cytotoxic lymphocytes and mature myeloid cells. Length = 243

>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

 Score = 60.7 bits (148), Expect = 4e-11
 Identities = 17/36 (47%), Positives = 26/36 (72%)

Query: 180 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 215
           GHAV ++G+G ++ +PYWL  NSWG    + G+F+I
Sbjct: 185 GHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRI 220

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane antibody-mediated interstitial nephritis. It plays a role in renal tubulogenesis and is defective in hereditary tubulointerstitial disorders. TIN-Ag is exclusively expressed in kidney tissues. . Length = 236

>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional

 Score = 61.6 bits (150), Expect = 4e-11
 Identities = 42/138 (30%), Positives = 60/138 (43%), Gaps = 26/138 (18%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
           GL S  D PY   +G   KC    +K        +L   G + + K L    P  V +  
Sbjct: 313 GLSSSSDVPYLAKDG---KCVVSSTKKVYIDS--YLVAKGKDVLNKSLV-ISPTVVYIAV 366

Query: 62  --DLIHD----YNGTPIRKNDETCSPYDLGHAVLLVG--YGKQDDIPYWLVRNSWGPIGP 113
             +L+      YNG         C    L HAVLLVG  Y ++    YW+++NSWG    
Sbjct: 367 SRELLKYKSGVYNGE--------CGKS-LNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWG 417

Query: 114 DEGFFKIER---GNNACG 128
           + G+ ++ER   G + CG
Sbjct: 418 ENGYMRLERTNEGTDKCG 435

Length = 448

>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional

 Score = 58.9 bits (142), Expect = 2e-10
 Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 4/91 (4%)

Query: 138 ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYW 197
             M   L K GP+S+ +++     Y+   +     +C    L H VLLVGY    ++PYW
Sbjct: 249 RVMAAWLAKNGPISIAVDASSFMSYHSGVL----TSCIGEQLNHGVLLVGYNMTGEVPYW 304

Query: 198 LVRNSWGPIGPDEGFFKIEHTLRSHLTHDIP 228
           +++NSWG    ++G+ ++   + + L    P
Sbjct: 305 VIKNSWGEDWGEKGYVRVTMGVNACLLTGYP 335

Length = 348

>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

 Score = 57.4 bits (139), Expect = 5e-10
 Identities = 34/142 (23%), Positives = 59/142 (41%), Gaps = 18/142 (12%)

Query: 76  DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFLHFN 135
           DETC+PY              +  P+           P    F I+        D+   +
Sbjct: 90  DETCNPY-QAK--------DGECNPFNRCGTCN----PFGECFAIKNYTLYFVSDYGSVS 136

Query: 136 GSETMKKILYKYGPLSVGLNSH-LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDD- 193
           G + M   +Y  GP+S G+ +   +  Y G   ++  +        H + + G+G  ++ 
Sbjct: 137 GRDKMMAEIYARGPISCGIMATEALENYTGGVYKEYVQDPLI---NHIISVAGWGVDENG 193

Query: 194 IPYWLVRNSWGPIGPDEGFFKI 215
           + YW+VRNSWG    + G+F+I
Sbjct: 194 VEYWIVRNSWGEPWGERGWFRI 215

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response. Length = 239

>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

 Score = 55.1 bits (133), Expect = 3e-09
 Identities = 24/101 (23%), Positives = 50/101 (49%), Gaps = 5/101 (4%)

Query: 34  KDFLHFNGSETMKKILYKYGPLSV-LLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVG 92
            D+   +G + M   +Y  GP+S  ++ ++ + +Y G   ++  +        H + + G
Sbjct: 130 SDYGSVSGRDKMMAEIYARGPISCGIMATEALENYTGGVYKEYVQDPLI---NHIISVAG 186

Query: 93  YGKQDD-IPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFL 132
           +G  ++ + YW+VRNSWG    + G+F+I   +    +  L
Sbjct: 187 WGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNL 227

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response. Length = 239

>gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional

 Score = 51.5 bits (123), Expect = 1e-07
 Identities = 22/47 (46%), Positives = 30/47 (63%), Gaps = 4/47 (8%)

Query: 86  HAVLLVGYGKQDD----IPYWLVRNSWGPIGPDEGFFKIERGNNACG 128
           HA++LVG+G+++       YW+ RNSWG     EG+FKI RG N  G
Sbjct: 620 HAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSG 666

Length = 693

>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 19/131 (14%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN- 60
           GL SE DYPY +   E   C  D+ K K +  K ++     +  K+ +   GP+SV +  
Sbjct: 345 GLCSEDDYPYVSDTPEL--CNIDRCKEK-YKIKSYVSIP-EDKFKEAIRFLGPISVSIAV 400

Query: 61  SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIP----------YWLVRNSWGP 110
           SD    Y G      D  C   +  HAV+LVGYG ++             Y++++NSWG 
Sbjct: 401 SDDFAFYKGGIF---DGECG-EEPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGE 456

Query: 111 IGPDEGFFKIE 121
              ++GF +IE
Sbjct: 457 SWGEKGFIRIE 467

Length = 489

>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional

 Score = 51.2 bits (122), Expect = 2e-07
 Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 6/54 (11%)

Query: 86  HAVLLVGYG-----KQDDIPYWLVRNSWGPIGPDEGFFKIER-GNNACGKDFLH 133
           HAV +VGYG     + +   YW+VRNSWG    DEG+FK++  G + C  +F+H
Sbjct: 723 HAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYGPSHCEDNFIH 776

Length = 1004

>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 18/96 (18%)

Query: 131 FLHFNGSETMKKILYKYGPLSVGLNSH--LIHF----YNGTPIRKNDETCSPYDLGHAVL 184
           +L   G + + K L    P  V +     L+ +    YNG         C    L HAVL
Sbjct: 342 YLVAKGKDVLNKSLV-ISPTVVYIAVSRELLKYKSGVYNGE--------CGKS-LNHAVL 391

Query: 185 LVG--YGKQDDIPYWLVRNSWGPIGPDEGFFKIEHT 218
           LVG  Y ++    YW+++NSWG    + G+ ++E T
Sbjct: 392 LVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERT 427

Length = 448

>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional

 Score = 47.0 bits (111), Expect = 4e-06
 Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 5/41 (12%)

Query: 181 HAVLLVGYG-----KQDDIPYWLVRNSWGPIGPDEGFFKIE 216
           HAV +VGYG     + +   YW+VRNSWG    DEG+FK++
Sbjct: 723 HAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVD 763

Length = 1004

>gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 4/39 (10%)

Query: 181 HAVLLVGYGKQDD----IPYWLVRNSWGPIGPDEGFFKI 215
           HA++LVG+G+++       YW+ RNSWG     EG+FKI
Sbjct: 620 HAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKI 658

Length = 693

>gnl|CDD|240381 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional

 Score = 43.3 bits (102), Expect = 6e-05
 Identities = 36/155 (23%), Positives = 60/155 (38%), Gaps = 28/155 (18%)

Query: 2   GLESEKDY--PYKNANGEKFKCAYDKSKVKLF------TGKDFLHFNGSETMKKILYKYG 53
           G+ +   Y  PY + +G +  C   +   + +       G  +      + +   +Y++G
Sbjct: 295 GILTTDSYYIPYDSGDGVERACKTRRPSRRYYFTNYGPLGGYYGAVTDPDEIIWEIYRHG 354

Query: 54  PL--SVLLNSDLI---HDYNGT---------PIRKNDETCSPY---DLGHAVLLVGYGK- 95
           P+  SV  NSD      +                  D     Y   ++ H VL++G+G  
Sbjct: 355 PVPASVYANSDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTD 414

Query: 96  QDDIPYWLVRNSWGPIGP--DEGFFKIERGNNACG 128
           ++   YWLV + WG      D G  KI RG NA  
Sbjct: 415 ENGGDYWLVLDPWGSRRSWCDGGTRKIARGVNAYN 449

Length = 548

>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 15/80 (18%)

Query: 148 GPLSVGLN-SHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIP----------Y 196
           GP+SV +  S    FY G      D  C   +  HAV+LVGYG ++             Y
Sbjct: 392 GPISVSIAVSDDFAFYKGGIF---DGECG-EEPNHAVILVGYGMEEIYNSDTKKMEKRYY 447

Query: 197 WLVRNSWGPIGPDEGFFKIE 216
           ++++NSWG    ++GF +IE
Sbjct: 448 YIIKNSWGESWGEKGFIRIE 467

Length = 489

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	233
KOG1542|consensus	372		100.0
KOG1542|consensus	372		99.97
PTZ00203	348	cathepsin L protease; Provisional	99.96
cd02621	243	Peptidase_C1A_CathepsinC Cathepsin C; also known a	99.96
cd02248	210	Peptidase_C1A Peptidase C1A subfamily (MEROPS data	99.96
cd02620	236	Peptidase_C1A_CathepsinB Cathepsin B group; compos	99.96
cd02698	239	Peptidase_C1A_CathepsinX Cathepsin X; the only pap	99.96
KOG1543|consensus	325		99.96
PTZ00021	489	falcipain-2; Provisional	99.95
KOG1543|consensus	325		99.95
PTZ00049	693	cathepsin C-like protein; Provisional	99.94
PTZ00200	448	cysteine proteinase; Provisional	99.94
PTZ00203	348	cathepsin L protease; Provisional	99.93
cd02621	243	Peptidase_C1A_CathepsinC Cathepsin C; also known a	99.93
PTZ00364	548	dipeptidyl-peptidase I precursor; Provisional	99.93
PF00112	219	Peptidase_C1: Papain family cysteine protease This	99.93
cd02698	239	Peptidase_C1A_CathepsinX Cathepsin X; the only pap	99.93
cd02620	236	Peptidase_C1A_CathepsinB Cathepsin B group; compos	99.93
PTZ00021	489	falcipain-2; Provisional	99.93
cd02248	210	Peptidase_C1A Peptidase C1A subfamily (MEROPS data	99.91
PTZ00200	448	cysteine proteinase; Provisional	99.9
PTZ00462	1004	Serine-repeat antigen protein; Provisional	99.9
cd02619	223	Peptidase_C1 C1 Peptidase family (MEROPS database	99.89
PTZ00364	548	dipeptidyl-peptidase I precursor; Provisional	99.89
PTZ00049	693	cathepsin C-like protein; Provisional	99.88
PF00112	219	Peptidase_C1: Papain family cysteine protease This	99.88
PTZ00462	1004	Serine-repeat antigen protein; Provisional	99.86
smart00645	174	Pept_C1 Papain family cysteine protease.	99.84
cd02619	223	Peptidase_C1 C1 Peptidase family (MEROPS database	99.84
smart00645	174	Pept_C1 Papain family cysteine protease.	99.82
KOG1544|consensus	470		99.82
KOG1544|consensus	470		99.78
cd00585	437	Peptidase_C1B Peptidase C1B subfamily (MEROPS data	99.64
COG4870	372	Cysteine protease [Posttranslational modification,	99.48
cd00585	437	Peptidase_C1B Peptidase C1B subfamily (MEROPS data	99.4
COG4870	372	Cysteine protease [Posttranslational modification,	99.11
PF03051	438	Peptidase_C1_2: Peptidase C1-like family This fami	98.78
PF03051	438	Peptidase_C1_2: Peptidase C1-like family This fami	98.03
COG3579	444	PepC Aminopeptidase C [Amino acid transport and me	97.16
COG3579	444	PepC Aminopeptidase C [Amino acid transport and me	93.84
PF13529	144	Peptidase_C39_2: Peptidase_C39 like family; PDB: 3	89.7
PF13529	144	Peptidase_C39_2: Peptidase_C39 like family; PDB: 3	88.23

>KOG1542|consensus

Probab=100.00  E-value=9e-34  Score=243.08  Aligned_cols=130  Identities=42%  Similarity=0.790  Sum_probs=122.5

Q ss_pred             CCCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC-CHHHHHHHHHhcCCEEEEEecCCCCCcCCceeeCCCCCC
Q psy282            1 MGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN-GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETC   79 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~-~~~~i~~~l~~~GPv~v~i~~~~f~~y~~Gi~~~~~~~c   79 (233)
                      .||+.|++|||++..++  .|..++....+.|++ |..++ ||++|.+.|.++|||+|+|++..+|+|.+||+.+....|
T Consensus       235 gGL~~E~dYPY~g~~~~--~C~~~~~~~~v~I~~-f~~l~~nE~~ia~wLv~~GPi~vgiNa~~mQ~YrgGV~~P~~~~C  311 (372)
T KOG1542|consen  235 GGLEKEKDYPYTGKKGN--QCHFDKSKIVVSIKD-FSMLSNNEDQIAAWLVTFGPLSVGINAKPMQFYRGGVSCPSKYIC  311 (372)
T ss_pred             CCccccccCCccccCCC--ccccchhhceEEEec-cEecCCCHHHHHHHHHhcCCeEEEEchHHHHHhcccccCCCcccC
Confidence            48999999999998875  899999999999999 99999 999999999999999999998899999999999854479


Q ss_pred             CCCCCCcEEEEEeeeccC-CccEEEEecCCCCCCCCCcceeeeccccccCccccc
Q psy282           80 SPYDLGHAVLLVGYGKQD-DIPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFLH  133 (233)
Q Consensus        80 ~~~~~~H~v~ivG~g~~~-~~~ywivknswg~~wge~gy~~~~~~~~~Cgi~~~~  133 (233)
                      ++..+||+|+|||||... ..||||||||||+.|||+||+|+.|+.|.||++..+
T Consensus       312 s~~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~N~CGi~~mv  366 (372)
T KOG1542|consen  312 SPKLLNHAVLLVGYGSSGYEKPYWIVKNSWGTSWGEKGYYKLCRGSNACGIADMV  366 (372)
T ss_pred             CccccCceEEEEeecCCCCCCceEEEECCccccccccceEEEeccccccccccch
Confidence            998899999999999998 999999999999999999999999999999998764

>KOG1542|consensus

Probab=99.97  E-value=8.7e-32  Score=230.87  Aligned_cols=126  Identities=32%  Similarity=0.620  Sum_probs=108.9

Q ss_pred             EEEEecCCCCCCCCCcceeeeccccccCccccc-----------ccCccceeeeeecccceEEEEeccccccccCcceec
Q psy282          101 YWLVRNSWGPIGPDEGFFKIERGNNACGKDFLH-----------FNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRK  169 (233)
Q Consensus       101 ywivknswg~~wge~gy~~~~~~~~~Cgi~~~~-----------~~~e~~i~~~l~~~GPv~v~i~~~~~~~y~~gi~~~  169 (233)
                      -|+++.  |..-.|+.|||.....+.|.+....           ..+|++|.+.|.++|||+|+|++..+|+|.+||+.+
T Consensus       229 ~~~~~~--gGL~~E~dYPY~g~~~~~C~~~~~~~~v~I~~f~~l~~nE~~ia~wLv~~GPi~vgiNa~~mQ~YrgGV~~P  306 (372)
T KOG1542|consen  229 KYIKKA--GGLEKEKDYPYTGKKGNQCHFDKSKIVVSIKDFSMLSNNEDQIAAWLVTFGPLSVGINAKPMQFYRGGVSCP  306 (372)
T ss_pred             HHHHHh--CCccccccCCccccCCCccccchhhceEEEeccEecCCCHHHHHHHHHhcCCeEEEEchHHHHHhcccccCC
Confidence            355665  5667799999988876789875421           247899999999999999999999999999999987


Q ss_pred             CCCCCCCCCCCEEEEEEEeeecC-CcCEEEEEcCCCCCCCCCcEEEEEccCCCCccCCCC
Q psy282          170 NDETCSPYDLGHAVLLVGYGKQD-DIPYWLVRNSWGPIGPDEGFFKIEHTLRSHLTHDIP  228 (233)
Q Consensus       170 ~~~~~~~~~~~Hav~iVGy~~~~-~~~ywivkNSWg~~WG~~Gy~~i~~~~~~~~~~~~~  228 (233)
                      ....|++..++|||||||||..+ .+||||||||||++|||+||||+.||.|.|.++.++
T Consensus       307 ~~~~Cs~~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~N~CGi~~mv  366 (372)
T KOG1542|consen  307 SKYICSPKLLNHAVLLVGYGSSGYEKPYWIVKNSWGTSWGEKGYYKLCRGSNACGIADMV  366 (372)
T ss_pred             CcccCCccccCceEEEEeecCCCCCCceEEEECCccccccccceEEEeccccccccccch
Confidence            67789987899999999999988 899999999999999999999999999988665554

>PTZ00203 cathepsin L protease; Provisional

Probab=99.96  E-value=9.5e-30  Score=225.42  Aligned_cols=127  Identities=28%  Similarity=0.588  Sum_probs=109.7

Q ss_pred             CCCCCCCCCCCCCCCCccccccCCC-ceeEEeCCceEEeC-CHHHHHHHHHhcCCEEEEEecCCCCCcCCceeeCCCCCC
Q psy282            2 GLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFN-GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETC   79 (233)
Q Consensus         2 Gi~~e~~yPY~~~~~~~~~C~~~~~-~~~~~i~~~~~~v~-~~~~i~~~l~~~GPv~v~i~~~~f~~y~~Gi~~~~~~~c   79 (233)
                      |+++|++|||++.++..+.|+.... ...+++++ |..++ ++++|+++|+++|||+|+|++++|++|++|||..    |
T Consensus       207 gi~~e~~YPY~~~~~~~~~C~~~~~~~~~~~i~~-~~~i~~~e~~~~~~l~~~GPv~v~i~a~~f~~Y~~GIy~~----c  281 (348)
T PTZ00203        207 TVFTEKSYPYVSGNGDVPECSNSSELAPGARIDG-YVSMESSERVMAAWLAKNGPISIAVDASSFMSYHSGVLTS----C  281 (348)
T ss_pred             CCCccccCCCccCCCCCCcCCCCcccccceEecc-eeecCcCHHHHHHHHHhCCCEEEEEEhhhhcCccCceeec----c
Confidence            4789999999987764346874333 24567888 88887 8999999999999999999998999999999963    7


Q ss_pred             CCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccccccCccccc
Q psy282           80 SPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFLH  133 (233)
Q Consensus        80 ~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~~~Cgi~~~~  133 (233)
                      +...+||+|+|||||.+++.+|||||||||+.|||+||+|+.++.+.|++..++
T Consensus       282 ~~~~~nHaVliVGYG~~~g~~YWiikNSWG~~WGe~GY~ri~rg~n~Cgi~~~~  335 (348)
T PTZ00203        282 IGEQLNHGVLLVGYNMTGEVPYWVIKNSWGEDWGEKGYVRVTMGVNACLLTGYP  335 (348)
T ss_pred             CCCCCCeEEEEEEEecCCCceEEEEEcCCCCCcCcCceEEEEcCCCcccccceE
Confidence            666689999999999998999999999999999999999999988999987654

>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access

Probab=99.96  E-value=2.6e-29  Score=213.27  Aligned_cols=130  Identities=29%  Similarity=0.585  Sum_probs=107.1

Q ss_pred             CCCCCCCCCCCCC-CCCCccccccCC-CceeEEeCCceEEe------CCHHHHHHHHHhcCCEEEEEecC-CCCCcCCce
Q psy282            1 MGLESEKDYPYKN-ANGEKFKCAYDK-SKVKLFTGKDFLHF------NGSETMKKILYKYGPLSVLLNSD-LIHDYNGTP   71 (233)
Q Consensus         1 ~Gi~~e~~yPY~~-~~~~~~~C~~~~-~~~~~~i~~~~~~v------~~~~~i~~~l~~~GPv~v~i~~~-~f~~y~~Gi   71 (233)
                      +||++|++|||+. ...   .|+... ...++++.+ |..+      +++++||++|+++|||+++|++. +|++|++||
T Consensus        88 ~Gi~~e~~yPY~~~~~~---~C~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~ik~~i~~~GPv~v~~~~~~~F~~Y~~GI  163 (243)
T cd02621          88 FGIVTEDYFPYTADDDR---PCKASPSECRRYYFSD-YNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVYSDFDFYKEGV  163 (243)
T ss_pred             cCcCCCceeCCCCCCCC---CCCCCccccccccccc-eeEcccccccCCHHHHHHHHHHcCCEEEEEEecccccccCCeE
Confidence            4899999999998 566   898655 334455555 4443      48999999999999999999995 999999999


Q ss_pred             eeCCC--CCCCC--------CCCCcEEEEEeeeccC--CccEEEEecCCCCCCCCCcceeeeccccccCcccccc
Q psy282           72 IRKND--ETCSP--------YDLGHAVLLVGYGKQD--DIPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFLHF  134 (233)
Q Consensus        72 ~~~~~--~~c~~--------~~~~H~v~ivG~g~~~--~~~ywivknswg~~wge~gy~~~~~~~~~Cgi~~~~~  134 (233)
                      |....  ..|+.        ..++|+|+|||||.+.  +.+|||||||||+.|||+||+|++++.+.|++.+.+.
T Consensus       164 y~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~~~cgi~~~~~  238 (243)
T cd02621         164 YHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGTNECGIESQAV  238 (243)
T ss_pred             ECcCCcccccccccccccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEecCCcccCcccceE
Confidence            98752  01543        2579999999999886  8999999999999999999999999889999987643

Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc

>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

Probab=99.96  E-value=1e-28  Score=204.49  Aligned_cols=126  Identities=40%  Similarity=0.780  Sum_probs=114.0

Q ss_pred             CCCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEecC-CCCCcCCceeeCCCC
Q psy282            1 MGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD-LIHDYNGTPIRKNDE   77 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~~-~f~~y~~Gi~~~~~~   77 (233)
                      +|+++|++|||.....   .|+.......+++.+ |..++  ++++||++|+++|||+++|.+. +|+.|++|||..+  
T Consensus        78 ~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~i~~-~~~i~~~~~~~ik~~l~~~gPV~~~~~~~~~f~~y~~Giy~~~--  151 (210)
T cd02248          78 GGLASESDYPYTGKDG---TCKYNSSKVGAKITG-YSNVPPGDEEALKAALANYGPVSVAIDASSSFQFYKGGIYSGP--  151 (210)
T ss_pred             CCcCccccCCccCCCC---CccCCCCcccEEEee-EEEcCCCcHHHHHHHHhhcCCEEEEEecCcccccCCCCceeCC--
Confidence            5899999999998777   898777678899999 99887  5899999999999999999995 9999999999987  


Q ss_pred             CCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccccccCcccc
Q psy282           78 TCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFL  132 (233)
Q Consensus        78 ~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~~~Cgi~~~  132 (233)
                      .|....++|+|+|||||.+.+.+|||+|||||+.||++||+|+.++++.|++...
T Consensus       152 ~~~~~~~~Hav~iVGy~~~~~~~ywiv~NSWG~~WG~~Gy~~i~~~~~~cgi~~~  206 (210)
T cd02248         152 CCSNTNLNHAVLLVGYGTENGVDYWIVKNSWGTSWGEKGYIRIARGSNLCGIASY  206 (210)
T ss_pred             CCCCCcCCEEEEEEEEeecCCceEEEEEcCCCCccccCcEEEEEcCCCccCceee
Confidence            4556678999999999998899999999999999999999999998889999754

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h

>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

Probab=99.96  E-value=8.4e-29  Score=209.34  Aligned_cols=129  Identities=25%  Similarity=0.435  Sum_probs=106.2

Q ss_pred             CCCCCCCCCCCCCCCCCc---------------cccccCCC----ceeEEeCCceEEeC-CHHHHHHHHHhcCCEEEEEe
Q psy282            1 MGLESEKDYPYKNANGEK---------------FKCAYDKS----KVKLFTGKDFLHFN-GSETMKKILYKYGPLSVLLN   60 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~---------------~~C~~~~~----~~~~~i~~~~~~v~-~~~~i~~~l~~~GPv~v~i~   60 (233)
                      +|+++|++|||.+.+...               +.|.....    ...+++.. +..+. ++++||++|+++|||+++|+
T Consensus        84 ~G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~-~~~~~~~~~~ik~~l~~~GPv~v~i~  162 (236)
T cd02620          84 TGVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTYEEDKHKGKS-AYSVPSDETDIMKEIMTNGPVQAAFT  162 (236)
T ss_pred             cCCCcCCEecCcCCCCccCCCCCCCCCCCCCCCCCCCcCCccccceeeeeecc-eeeeCCHHHHHHHHHHHCCCeEEEEE
Confidence            589999999998765410               12543221    22345666 66665 78999999999999999999


Q ss_pred             c-CCCCCcCCceeeCCCCCCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccccccCccccc
Q psy282           61 S-DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFLH  133 (233)
Q Consensus        61 ~-~~f~~y~~Gi~~~~~~~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~~~Cgi~~~~  133 (233)
                      + ++|+.|++|||...   |+...++|||+|||||.+++.+|||||||||+.|||+||+|+.++.+.|++.+..
T Consensus       163 ~~~~f~~Y~~Giy~~~---~~~~~~~HaV~iVGyg~~~g~~YWivrNSWG~~WGe~Gy~ri~~~~~~cgi~~~~  233 (236)
T cd02620         163 VYEDFLYYKSGVYQHT---SGKQLGGHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRILRGSNECGIESEV  233 (236)
T ss_pred             echhhhhcCCcEEeec---CCCCcCCeEEEEEEEeccCCeeEEEEEeCCCCCCCCCcEEEEEccCcccccccce
Confidence            9 59999999999765   6666789999999999999999999999999999999999999988999998754

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane

>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

Probab=99.96  E-value=1.5e-28  Score=208.12  Aligned_cols=125  Identities=24%  Similarity=0.505  Sum_probs=105.5

Q ss_pred             CCCCCCCCCCCCCCCCCcccccc---------------CCCceeEEeCCceEEeCCHHHHHHHHHhcCCEEEEEecC-CC
Q psy282            1 MGLESEKDYPYKNANGEKFKCAY---------------DKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSD-LI   64 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~C~~---------------~~~~~~~~i~~~~~~v~~~~~i~~~l~~~GPv~v~i~~~-~f   64 (233)
                      +|+++|++|||++.+.   .|+.               .+....+++++ |..++++++||++|.++|||+|+|++. +|
T Consensus        86 ~Gl~~e~~yPY~~~~~---~C~~~~~~~~c~~~~~c~~~~~~~~~~i~~-~~~~~~~~~i~~~l~~~GPV~v~i~~~~~f  161 (239)
T cd02698          86 HGIPDETCNPYQAKDG---ECNPFNRCGTCNPFGECFAIKNYTLYFVSD-YGSVSGRDKMMAEIYARGPISCGIMATEAL  161 (239)
T ss_pred             cCcCCCCeeCCcCCCC---CCcCCCCCCCcccCcccccccccceEEeee-ceecCCHHHHHHHHHHcCCEEEEEEecccc
Confidence            4899999999998766   5542               11123567888 888888999999999999999999995 89


Q ss_pred             CCcCCceeeCCCCCCCCCCCCcEEEEEeeeccC-CccEEEEecCCCCCCCCCcceeeeccc-----cccCcccc
Q psy282           65 HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD-DIPYWLVRNSWGPIGPDEGFFKIERGN-----NACGKDFL  132 (233)
Q Consensus        65 ~~y~~Gi~~~~~~~c~~~~~~H~v~ivG~g~~~-~~~ywivknswg~~wge~gy~~~~~~~-----~~Cgi~~~  132 (233)
                      +.|++|||+..  .| ...++|+|+|||||+++ +.+|||||||||+.|||+||+|+.++.     +.|+|++.
T Consensus       162 ~~Y~~GIy~~~--~~-~~~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~  232 (239)
T cd02698         162 ENYTGGVYKEY--VQ-DPLINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEED  232 (239)
T ss_pred             cccCCeEEccC--CC-CCcCCeEEEEEEEEecCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccccccccc
Confidence            99999999876  34 45689999999999886 899999999999999999999999987     77887643

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.

>KOG1543|consensus

Probab=99.96  E-value=1.9e-28  Score=215.47  Aligned_cols=126  Identities=32%  Similarity=0.609  Sum_probs=112.8

Q ss_pred             CCCCC-CCCCCCCCCCCCccccccCCCceeEEeCCceEEeC-CHHHHHHHHHhcCCEEEEEecC-CCCCcCCceeeCCCC
Q psy282            1 MGLES-EKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN-GSETMKKILYKYGPLSVLLNSD-LIHDYNGTPIRKNDE   77 (233)
Q Consensus         1 ~Gi~~-e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~-~~~~i~~~l~~~GPv~v~i~~~-~f~~y~~Gi~~~~~~   77 (233)
                      +|+++ |++|||.+..+   .|+.+.....+.+.+ +..++ +|++|+++|+.+|||+|+|++. +|+.|++|||.++  
T Consensus       189 ~G~~t~~~~Ypy~~~~~---~C~~~~~~~~~~~~~-~~~~~~~e~~i~~~v~~~GPv~v~~~a~~~F~~Y~~GVy~~~--  262 (325)
T KOG1543|consen  189 NGGVTECENYPYIGKDG---TCKSNKKDKTVTIKG-FYNVPANEEAIAEAVAKNGPVSVAIDAYEDFSLYKGGVYAEE--  262 (325)
T ss_pred             hCCCCCCcCCCCcCCCC---CccCCCccceeEeee-eeecCcCHHHHHHHHHhcCCeEEEEeehhhhhhccCceEeCC--
Confidence            46677 99999999999   999888777788888 88888 9999999999999999999995 9999999999998  


Q ss_pred             CCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccccccCcccc
Q psy282           78 TCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFL  132 (233)
Q Consensus        78 ~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~~~Cgi~~~  132 (233)
                      .|....++|+|+|||||++++.+|||++||||+.|||+||+|+.|+.+.|+++..
T Consensus       263 ~~~~~~~~Hav~iVGyG~~~~~~YWivkNSWG~~WGe~Gy~ri~r~~~~~~I~~~  317 (325)
T KOG1543|consen  263 KGDDKEGDHAVLIVGYGTGDGVDYWIVKNSWGTDWGEKGYFRIARGVNKCGIASE  317 (325)
T ss_pred             CCCCCCCCceEEEEEEcCCCCceeEEEEcCCCCCcccCceEEEecCCCchhhhcc
Confidence            3433368999999999996678999999999999999999999999999986553

>PTZ00021 falcipain-2; Provisional

Probab=99.95  E-value=2.4e-27  Score=216.67  Aligned_cols=123  Identities=31%  Similarity=0.592  Sum_probs=106.0

Q ss_pred             CCCCCCCCCCCCCC-CCccccccCCCceeEEeCCceEEeCCHHHHHHHHHhcCCEEEEEecC-CCCCcCCceeeCCCCCC
Q psy282            2 GLESEKDYPYKNAN-GEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSD-LIHDYNGTPIRKNDETC   79 (233)
Q Consensus         2 Gi~~e~~yPY~~~~-~~~~~C~~~~~~~~~~i~~~~~~v~~~~~i~~~l~~~GPv~v~i~~~-~f~~y~~Gi~~~~~~~c   79 (233)
                      ||++|++|||++.. +   .|+.......++|.+ |..++ +++|+++|+.+|||+|+|++. +|++|++|||...   |
T Consensus       345 Gl~tE~~YPY~~~~~~---~C~~~~~~~~~~i~~-y~~i~-~~~lk~al~~~GPVsv~i~a~~~f~~YkgGIy~~~---C  416 (489)
T PTZ00021        345 GLCSEDDYPYVSDTPE---LCNIDRCKEKYKIKS-YVSIP-EDKFKEAIRFLGPISVSIAVSDDFAFYKGGIFDGE---C  416 (489)
T ss_pred             ccCcccccCccCCCCC---ccccccccccceeee-EEEec-HHHHHHHHHhcCCeEEEEEeecccccCCCCcCCCC---C
Confidence            89999999999874 5   798665556788999 98886 678999999999999999995 9999999999764   8


Q ss_pred             CCCCCCcEEEEEeeeccCC----------ccEEEEecCCCCCCCCCcceeeeccc----cccCccccc
Q psy282           80 SPYDLGHAVLLVGYGKQDD----------IPYWLVRNSWGPIGPDEGFFKIERGN----NACGKDFLH  133 (233)
Q Consensus        80 ~~~~~~H~v~ivG~g~~~~----------~~ywivknswg~~wge~gy~~~~~~~----~~Cgi~~~~  133 (233)
                      +. .+||||+|||||.+++          .+|||||||||+.|||+||+|+.++.    +.|++...+
T Consensus       417 ~~-~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~GY~rI~r~~~g~~n~CGI~t~a  483 (489)
T PTZ00021        417 GE-EPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIETDENGLMKTCSLGTEA  483 (489)
T ss_pred             CC-ccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccCeEEEEEcCCCCCCCCCCCcccc
Confidence            65 4799999999997642          47999999999999999999999875    589997643

>KOG1543|consensus

Probab=99.95  E-value=1.5e-28  Score=216.17  Aligned_cols=119  Identities=28%  Similarity=0.554  Sum_probs=95.3

Q ss_pred             EEEecCCCCCCCCCcceeeeccccccCcccc-----------cccCccceeeeeecccceEEEEec-cccccccCcceec
Q psy282          102 WLVRNSWGPIGPDEGFFKIERGNNACGKDFL-----------HFNGSETMKKILYKYGPLSVGLNS-HLIHFYNGTPIRK  169 (233)
Q Consensus       102 wivknswg~~wge~gy~~~~~~~~~Cgi~~~-----------~~~~e~~i~~~l~~~GPv~v~i~~-~~~~~y~~gi~~~  169 (233)
                      |+.+|  |..-+++.|++... ++.|.....           ...++.+|++++..+|||+++|++ ..|++|++|||. 
T Consensus       185 yi~~~--G~~t~~~~Ypy~~~-~~~C~~~~~~~~~~~~~~~~~~~~e~~i~~~v~~~GPv~v~~~a~~~F~~Y~~GVy~-  260 (325)
T KOG1543|consen  185 YIKKN--GGVTECENYPYIGK-DGTCKSNKKDKTVTIKGFYNVPANEEAIAEAVAKNGPVSVAIDAYEDFSLYKGGVYA-  260 (325)
T ss_pred             HHHHh--CCCCCCcCCCCcCC-CCCccCCCccceeEeeeeeecCcCHHHHHHHHHhcCCeEEEEeehhhhhhccCceEe-
Confidence            55666  44445888987765 356765441           123588999999999999999999 589999999997 


Q ss_pred             CCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcEEEEEccCCCCccC
Q psy282          170 NDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHLTH  225 (233)
Q Consensus       170 ~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy~~i~~~~~~~~~~  225 (233)
                       ...|....++|||+|||||+.++.+|||||||||+.|||+|||||.|+.+.+.++
T Consensus       261 -~~~~~~~~~~Hav~iVGyG~~~~~~YWivkNSWG~~WGe~Gy~ri~r~~~~~~I~  315 (325)
T KOG1543|consen  261 -EEKGDDKEGDHAVLIVGYGTGDGVDYWIVKNSWGTDWGEKGYFRIARGVNKCGIA  315 (325)
T ss_pred             -CCCCCCCCCCceEEEEEEcCCCCceeEEEEcCCCCCcccCceEEEecCCCchhhh
Confidence             3344432589999999999966789999999999999999999999999888543

>PTZ00049 cathepsin C-like protein; Provisional

Probab=99.94  E-value=1.8e-26  Score=215.86  Aligned_cols=130  Identities=29%  Similarity=0.635  Sum_probs=103.5

Q ss_pred             CCCCCCCCCCCCCCCCCccccccCCC---------------------------------------ceeEEeCCceEEe--
Q psy282            1 MGLESEKDYPYKNANGEKFKCAYDKS---------------------------------------KVKLFTGKDFLHF--   39 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~C~~~~~---------------------------------------~~~~~i~~~~~~v--   39 (233)
                      +||++|+||||++..+   .|+....                                       ..++++++ |..+  
T Consensus       472 ~GI~tEscYPY~a~~g---~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~y~k~-y~yI~g  547 (693)
T PTZ00049        472 QGIPLDKVFPYTATEQ---TCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEPARWYAKD-YNYIGG  547 (693)
T ss_pred             CCCCcCCccCCcCCCC---CCCCCCCCccccccccccccccccccccccccccccccccccccccccceeeee-eEEecc
Confidence            4899999999998877   6754211                                       11234555 5544  


Q ss_pred             -------CCHHHHHHHHHhcCCEEEEEecC-CCCCcCCceeeCCC----CCCCCC--------------CCCcEEEEEee
Q psy282           40 -------NGSETMKKILYKYGPLSVLLNSD-LIHDYNGTPIRKND----ETCSPY--------------DLGHAVLLVGY   93 (233)
Q Consensus        40 -------~~~~~i~~~l~~~GPv~v~i~~~-~f~~y~~Gi~~~~~----~~c~~~--------------~~~H~v~ivG~   93 (233)
                             .++++|+++|+++|||+|+|++. +|++|++|||..+.    ..|+..              .+||||+||||
T Consensus       548 ~y~~~~~~~E~~Im~eI~~~GPVsVsIda~~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G~e~~NHAVlIVGw  627 (693)
T PTZ00049        548 CYGCNQCNGEKIMMNEIYRNGPIVASFEASPDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITGWEKVNHAIVLVGW  627 (693)
T ss_pred             cccccCCCCHHHHHHHHHhcCCEEEEEEechhhhcCCCccccCcccccccccCCccccccccccccccccCceEEEEEEe
Confidence                   26899999999999999999995 99999999998531    036422              46999999999


Q ss_pred             ecc--CC--ccEEEEecCCCCCCCCCcceeeeccccccCcccccc
Q psy282           94 GKQ--DD--IPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFLHF  134 (233)
Q Consensus        94 g~~--~~--~~ywivknswg~~wge~gy~~~~~~~~~Cgi~~~~~  134 (233)
                      |.+  ++  .+|||+|||||+.||++||+|+.|+.+.|+|++.+.
T Consensus       628 G~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~N~CGIEs~a~  672 (693)
T PTZ00049        628 GEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIESQSL  672 (693)
T ss_pred             ccccCCCcccCEEEEECCCCCCcccCceEEEEcCCCccCCcccee
Confidence            985  45  389999999999999999999999999999987654

>PTZ00200 cysteine proteinase; Provisional

Probab=99.94  E-value=1.8e-26  Score=209.84  Aligned_cols=123  Identities=31%  Similarity=0.631  Sum_probs=102.9

Q ss_pred             CCCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeCCHHHHHHHHHhcCCEEEEEecC-CCCCcCCceeeCCCCCC
Q psy282            1 MGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSD-LIHDYNGTPIRKNDETC   79 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~~~~~i~~~l~~~GPv~v~i~~~-~f~~y~~Gi~~~~~~~c   79 (233)
                      +||++|++|||++..+   .|+.... ..++|.+ |..+++.+.|+++|. +|||+|+|++. +|+.|++|||..+   |
T Consensus       312 ~Gi~~e~~YPY~~~~~---~C~~~~~-~~~~i~~-y~~~~~~~~l~~~l~-~GPV~v~i~~~~~f~~Yk~GIy~~~---C  382 (448)
T PTZ00200        312 KGLSSSSDVPYLAKDG---KCVVSST-KKVYIDS-YLVAKGKDVLNKSLV-ISPTVVYIAVSRELLKYKSGVYNGE---C  382 (448)
T ss_pred             cCccccccCCCCCCCC---CCcCCCC-CeeEecc-eEecCHHHHHHHHHh-cCCEEEEeecccccccCCCCccccc---c
Confidence            5999999999999988   8986543 4567888 887766566666664 69999999995 9999999999764   8


Q ss_pred             CCCCCCcEEEEEeeec--cCCccEEEEecCCCCCCCCCcceeeecc---ccccCccccc
Q psy282           80 SPYDLGHAVLLVGYGK--QDDIPYWLVRNSWGPIGPDEGFFKIERG---NNACGKDFLH  133 (233)
Q Consensus        80 ~~~~~~H~v~ivG~g~--~~~~~ywivknswg~~wge~gy~~~~~~---~~~Cgi~~~~  133 (233)
                      +.. +||||+|||||.  +++.+|||||||||+.|||+||+|+.++   .+.|++.+.+
T Consensus       383 ~~~-~nHaV~lVGyG~d~~~g~~YWIIkNSWG~~WGe~GY~ri~r~~~g~n~CGI~~~~  440 (448)
T PTZ00200        383 GKS-LNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERTNEGTDKCGILTVG  440 (448)
T ss_pred             CCC-CcEEEEEEEecccCCCCCceEEEEcCCCCCcccCeeEEEEeCCCCCCcCCccccc
Confidence            654 899999999996  4678999999999999999999999985   4789997653

>PTZ00203 cathepsin L protease; Provisional

Probab=99.93  E-value=5.4e-27  Score=207.84  Aligned_cols=118  Identities=25%  Similarity=0.590  Sum_probs=90.6

Q ss_pred             EEEecCCCCCCCCCcceeeeccc--cccCccc----------c-c-ccCccceeeeeecccceEEEEeccccccccCcce
Q psy282          102 WLVRNSWGPIGPDEGFFKIERGN--NACGKDF----------L-H-FNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPI  167 (233)
Q Consensus       102 wivknswg~~wge~gy~~~~~~~--~~Cgi~~----------~-~-~~~e~~i~~~l~~~GPv~v~i~~~~~~~y~~gi~  167 (233)
                      |++++.-|..-.|+.|||.....  ..|....          + . ..+++.|+++|.+.|||+++|++..|++|++|||
T Consensus       199 yi~~~~~ggi~~e~~YPY~~~~~~~~~C~~~~~~~~~~~i~~~~~i~~~e~~~~~~l~~~GPv~v~i~a~~f~~Y~~GIy  278 (348)
T PTZ00203        199 WVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARIDGYVSMESSERVMAAWLAKNGPISIAVDASSFMSYHSGVL  278 (348)
T ss_pred             HHHHhcCCCCCccccCCCccCCCCCCcCCCCcccccceEecceeecCcCHHHHHHHHHhCCCEEEEEEhhhhcCccCcee
Confidence            55544334444577888865431  1464211          0 0 1245678888988999999999988999999998


Q ss_pred             ecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcEEEEEccCCCCc
Q psy282          168 RKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL  223 (233)
Q Consensus       168 ~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy~~i~~~~~~~~  223 (233)
                      .    .|....+||||+|||||++++++|||||||||++|||+|||||+|+.+.|.
T Consensus       279 ~----~c~~~~~nHaVliVGYG~~~g~~YWiikNSWG~~WGe~GY~ri~rg~n~Cg  330 (348)
T PTZ00203        279 T----SCIGEQLNHGVLLVGYNMTGEVPYWVIKNSWGEDWGEKGYVRVTMGVNACL  330 (348)
T ss_pred             e----ccCCCCCCeEEEEEEEecCCCceEEEEEcCCCCCcCcCceEEEEcCCCccc
Confidence            5    386656899999999999889999999999999999999999999987653

>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access

Probab=99.93  E-value=1.2e-26  Score=196.91  Aligned_cols=89  Identities=33%  Similarity=0.617  Sum_probs=74.9

Q ss_pred             cCccceeeeeecccceEEEEec-cccccccCcceecCC--CCCCC--------CCCCEEEEEEEeeecC--CcCEEEEEc
Q psy282          135 NGSETMKKILYKYGPLSVGLNS-HLIHFYNGTPIRKND--ETCSP--------YDLGHAVLLVGYGKQD--DIPYWLVRN  201 (233)
Q Consensus       135 ~~e~~i~~~l~~~GPv~v~i~~-~~~~~y~~gi~~~~~--~~~~~--------~~~~Hav~iVGy~~~~--~~~ywivkN  201 (233)
                      .++++|+++|.++|||+++|++ +.|++|++|||....  ..|+.        ..++|||+|||||++.  +++||||||
T Consensus       131 ~~~~~ik~~i~~~GPv~v~~~~~~~F~~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirN  210 (243)
T cd02621         131 TNEDEMKWEIYRNGPIVVAFEVYSDFDFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKN  210 (243)
T ss_pred             CCHHHHHHHHHHcCCEEEEEEecccccccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCCCCCcEEEEEc
Confidence            3567899999999999999998 589999999986321  12643        2479999999999876  899999999


Q ss_pred             CCCCCCCCCcEEEEEccCCCCc
Q psy282          202 SWGPIGPDEGFFKIEHTLRSHL  223 (233)
Q Consensus       202 SWg~~WG~~Gy~~i~~~~~~~~  223 (233)
                      |||++|||+|||||+|+.+.+-
T Consensus       211 SWG~~WGe~Gy~~i~~~~~~cg  232 (243)
T cd02621         211 SWGSSWGEKGYFKIRRGTNECG  232 (243)
T ss_pred             CCCCCCCcCCeEEEecCCcccC
Confidence            9999999999999999876553

Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc

>PTZ00364 dipeptidyl-peptidase I precursor; Provisional

Probab=99.93  E-value=1e-25  Score=208.13  Aligned_cols=134  Identities=22%  Similarity=0.443  Sum_probs=105.0

Q ss_pred             CCCCCCCCC--CCCCCCCCccccccCCCceeEEeCCc-----eEEeC-CHHHHHHHHHhcCCEEEEEecC-CCCCcCCce
Q psy282            1 MGLESEKDY--PYKNANGEKFKCAYDKSKVKLFTGKD-----FLHFN-GSETMKKILYKYGPLSVLLNSD-LIHDYNGTP   71 (233)
Q Consensus         1 ~Gi~~e~~y--PY~~~~~~~~~C~~~~~~~~~~i~~~-----~~~v~-~~~~i~~~l~~~GPv~v~i~~~-~f~~y~~Gi   71 (233)
                      +||++|++|  ||++.++....|+......+++++++     |..+. ++++|+++|+++|||+|+|++. +|+.|++||
T Consensus       294 ~GI~tE~dY~~PY~~~dg~~~~Ck~~~~~~~y~~~~~~~I~gyy~~~~~e~~I~~eI~~~GPVsVaIda~~df~~YksGi  373 (548)
T PTZ00364        294 FGILTTDSYYIPYDSGDGVERACKTRRPSRRYYFTNYGPLGGYYGAVTDPDEIIWEIYRHGPVPASVYANSDWYNCDENS  373 (548)
T ss_pred             CCcccccccCCCCCCCCCCCCCCCCCcccceeeeeeeEEecceeecCCcHHHHHHHHHHcCCeEEEEEechHHHhcCCCC
Confidence            589999999  99877663335876554444444430     44344 7899999999999999999995 899999999


Q ss_pred             eeCC-----C-CCC---C-------CCCCCcEEEEEeeec-cCCccEEEEecCCCC--CCCCCcceeeeccccccCcccc
Q psy282           72 IRKN-----D-ETC---S-------PYDLGHAVLLVGYGK-QDDIPYWLVRNSWGP--IGPDEGFFKIERGNNACGKDFL  132 (233)
Q Consensus        72 ~~~~-----~-~~c---~-------~~~~~H~v~ivG~g~-~~~~~ywivknswg~--~wge~gy~~~~~~~~~Cgi~~~  132 (233)
                      |...     . +.|   +       ...+||||+|||||. +++.+|||+|||||+  .|||+||+|+.|+.+.|++++.
T Consensus       374 y~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~~WGE~GYfRI~RG~N~CGIes~  453 (548)
T PTZ00364        374 TEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTRKIARGVNAYNIESE  453 (548)
T ss_pred             ccCeeccccccccccccCCcccccccccCCeEEEEEEecccCCCceEEEEECCCCCCCCcccCCeEEEEcCCCcccccce
Confidence            8631     0 011   1       235799999999997 478899999999999  9999999999999999999876


Q ss_pred             cc
Q psy282          133 HF  134 (233)
Q Consensus       133 ~~  134 (233)
                      +.
T Consensus       454 ~v  455 (548)
T PTZ00364        454 VV  455 (548)
T ss_pred             ee
Confidence            53

>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification

Probab=99.93  E-value=4.2e-26  Score=189.19  Aligned_cols=127  Identities=33%  Similarity=0.630  Sum_probs=110.1

Q ss_pred             CCCCCCCCCCCCCCC-CCccccccCCCce-eEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEecC--CCCCcCCceeeC
Q psy282            1 MGLESEKDYPYKNAN-GEKFKCAYDKSKV-KLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRK   74 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~-~~~~~C~~~~~~~-~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~~--~f~~y~~Gi~~~   74 (233)
                      +|+++|++|||.... .   .|....... ..++.. |..+.  ++++||++|.++|||++.|.+.  +|+.|++|||..
T Consensus        82 ~Gi~~e~~~pY~~~~~~---~c~~~~~~~~~~~i~~-~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~~  157 (219)
T PF00112_consen   82 NGIVTEEDYPYNGNENP---TCKSKKSNSYYVKIKG-YGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYKSGIYDP  157 (219)
T ss_dssp             TSBEBTTTS--SSSSSC---SSCHSGGGEEEBEESE-EEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEESSEECS
T ss_pred             Ccccccccccccccccc---cccccccccccccccc-cccccccchhHHHHHHhhCceeeeeeeccccccccccceeeec
Confidence            599999999999876 5   798765544 478888 88887  5999999999999999999994  599999999998


Q ss_pred             CCCCCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeecccc-ccCccccc
Q psy282           75 NDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNN-ACGKDFLH  133 (233)
Q Consensus        75 ~~~~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~~-~Cgi~~~~  133 (233)
                      +  .|....++|+|+|||||.+.+..|||+|||||+.||++||+|+.++.+ .|++++.+
T Consensus       158 ~--~~~~~~~~Hav~iVGy~~~~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~~~c~i~~~~  215 (219)
T PF00112_consen  158 P--DCSNESGGHAVLIVGYDDENGKGYWIVKNSWGTDWGDNGYFRISYDYNNECGIESQA  215 (219)
T ss_dssp             T--SSSSSSEEEEEEEEEEEEETTEEEEEEE-SBTTTSTBTTEEEEESSSSSGGGTTSSE
T ss_pred             c--ccccccccccccccccccccceeeEeeehhhCCccCCCeEEEEeeCCCCcCccCcee
Confidence            7  587788999999999999999999999999999999999999999876 99998654

; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....

>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

Probab=99.93  E-value=2.5e-26  Score=194.63  Aligned_cols=81  Identities=28%  Similarity=0.649  Sum_probs=71.8

Q ss_pred             CccceeeeeecccceEEEEec-cccccccCcceecCCCCCCCCCCCEEEEEEEeeecC-CcCEEEEEcCCCCCCCCCcEE
Q psy282          136 GSETMKKILYKYGPLSVGLNS-HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD-DIPYWLVRNSWGPIGPDEGFF  213 (233)
Q Consensus       136 ~e~~i~~~l~~~GPv~v~i~~-~~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~-~~~ywivkNSWg~~WG~~Gy~  213 (233)
                      +++.|+++|.++|||+++|++ +.|++|++|||.  ...|. ..++|||+|||||+++ +++|||||||||++|||+|||
T Consensus       137 ~~~~i~~~l~~~GPV~v~i~~~~~f~~Y~~GIy~--~~~~~-~~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~  213 (239)
T cd02698         137 GRDKMMAEIYARGPISCGIMATEALENYTGGVYK--EYVQD-PLINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWF  213 (239)
T ss_pred             CHHHHHHHHHHcCCEEEEEEecccccccCCeEEc--cCCCC-CcCCeEEEEEEEEecCCCCEEEEEEcCCCcccCcCceE
Confidence            467799999899999999999 479999999985  33443 4679999999999876 899999999999999999999


Q ss_pred             EEEccC
Q psy282          214 KIEHTL  219 (233)
Q Consensus       214 ~i~~~~  219 (233)
                      ||+|+.
T Consensus       214 ~i~rg~  219 (239)
T cd02698         214 RIVTSS  219 (239)
T ss_pred             EEEccC
Confidence            999998

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.

>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

Probab=99.93  E-value=2.5e-26  Score=194.22  Aligned_cols=84  Identities=26%  Similarity=0.556  Sum_probs=74.1

Q ss_pred             CccceeeeeecccceEEEEec-cccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcEEE
Q psy282          136 GSETMKKILYKYGPLSVGLNS-HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK  214 (233)
Q Consensus       136 ~e~~i~~~l~~~GPv~v~i~~-~~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy~~  214 (233)
                      ++++|+.+|.++|||+++|++ +.|++|++|||.   ..|....++|||+|||||++++++|||||||||+.|||+||||
T Consensus       143 ~~~~ik~~l~~~GPv~v~i~~~~~f~~Y~~Giy~---~~~~~~~~~HaV~iVGyg~~~g~~YWivrNSWG~~WGe~Gy~r  219 (236)
T cd02620         143 DETDIMKEIMTNGPVQAAFTVYEDFLYYKSGVYQ---HTSGKQLGGHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFR  219 (236)
T ss_pred             HHHHHHHHHHHCCCeEEEEEechhhhhcCCcEEe---ecCCCCcCCeEEEEEEEeccCCeeEEEEEeCCCCCCCCCcEEE
Confidence            467899999999999999999 589999999985   2355556799999999999889999999999999999999999


Q ss_pred             EEccCCCC
Q psy282          215 IEHTLRSH  222 (233)
Q Consensus       215 i~~~~~~~  222 (233)
                      |+|+.+.+
T Consensus       220 i~~~~~~c  227 (236)
T cd02620         220 ILRGSNEC  227 (236)
T ss_pred             EEccCccc
Confidence            99987544

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane

>PTZ00021 falcipain-2; Provisional

Probab=99.93  E-value=4.3e-26  Score=208.42  Aligned_cols=122  Identities=24%  Similarity=0.466  Sum_probs=90.6

Q ss_pred             EEEecCCCCCCCCCcceeeeccccccCccc---------ccccCccceeeeeecccceEEEEec-cccccccCcceecCC
Q psy282          102 WLVRNSWGPIGPDEGFFKIERGNNACGKDF---------LHFNGSETMKKILYKYGPLSVGLNS-HLIHFYNGTPIRKND  171 (233)
Q Consensus       102 wivknswg~~wge~gy~~~~~~~~~Cgi~~---------~~~~~e~~i~~~l~~~GPv~v~i~~-~~~~~y~~gi~~~~~  171 (233)
                      |++++  +....|+.|||.......|....         +....++.++++|...|||+++|++ +.|++|++|||.   
T Consensus       339 yi~~~--gGl~tE~~YPY~~~~~~~C~~~~~~~~~~i~~y~~i~~~~lk~al~~~GPVsv~i~a~~~f~~YkgGIy~---  413 (489)
T PTZ00021        339 DMIEL--GGLCSEDDYPYVSDTPELCNIDRCKEKYKIKSYVSIPEDKFKEAIRFLGPISVSIAVSDDFAFYKGGIFD---  413 (489)
T ss_pred             hhhhc--cccCcccccCccCCCCCccccccccccceeeeEEEecHHHHHHHHHhcCCeEEEEEeecccccCCCCcCC---
Confidence            55554  34556888998765335664321         1111246788899889999999999 589999999984   


Q ss_pred             CCCCCCCCCEEEEEEEeeecC----------CcCEEEEEcCCCCCCCCCcEEEEEccCCCCccCCCCCCC
Q psy282          172 ETCSPYDLGHAVLLVGYGKQD----------DIPYWLVRNSWGPIGPDEGFFKIEHTLRSHLTHDIPGVP  231 (233)
Q Consensus       172 ~~~~~~~~~Hav~iVGy~~~~----------~~~ywivkNSWg~~WG~~Gy~~i~~~~~~~~~~~~~~~~  231 (233)
                      ..|+. .++|||+|||||+++          +.+|||||||||++|||+|||||+|+.+..  .++|||.
T Consensus       414 ~~C~~-~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~GY~rI~r~~~g~--~n~CGI~  480 (489)
T PTZ00021        414 GECGE-EPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIETDENGL--MKTCSLG  480 (489)
T ss_pred             CCCCC-ccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccCeEEEEEcCCCCC--CCCCCCc
Confidence            46875 579999999999763          257999999999999999999999986421  3455553

>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

Probab=99.91  E-value=7.5e-25  Score=181.32  Aligned_cols=84  Identities=38%  Similarity=0.791  Sum_probs=74.4

Q ss_pred             ccceeeeeecccceEEEEecc-ccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcEEEE
Q psy282          137 SETMKKILYKYGPLSVGLNSH-LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI  215 (233)
Q Consensus       137 e~~i~~~l~~~GPv~v~i~~~-~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy~~i  215 (233)
                      .++||++|.++|||+++|.+. .|++|++|||..  ..|....++|||+|||||++.+.+|||||||||+.||++|||||
T Consensus       117 ~~~ik~~l~~~gPV~~~~~~~~~f~~y~~Giy~~--~~~~~~~~~Hav~iVGy~~~~~~~ywiv~NSWG~~WG~~Gy~~i  194 (210)
T cd02248         117 EEALKAALANYGPVSVAIDASSSFQFYKGGIYSG--PCCSNTNLNHAVLLVGYGTENGVDYWIVKNSWGTSWGEKGYIRI  194 (210)
T ss_pred             HHHHHHHHhhcCCEEEEEecCcccccCCCCceeC--CCCCCCcCCEEEEEEEEeecCCceEEEEEcCCCCccccCcEEEE
Confidence            578999999999999999984 899999999863  34545568999999999998889999999999999999999999


Q ss_pred             EccCCCC
Q psy282          216 EHTLRSH  222 (233)
Q Consensus       216 ~~~~~~~  222 (233)
                      +++.+.|
T Consensus       195 ~~~~~~c  201 (210)
T cd02248         195 ARGSNLC  201 (210)
T ss_pred             EcCCCcc
Confidence            9988654

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h

>PTZ00200 cysteine proteinase; Provisional

Probab=99.90  E-value=4e-24  Score=194.55  Aligned_cols=103  Identities=25%  Similarity=0.489  Sum_probs=77.7

Q ss_pred             CCCCCcceeeeccccccCccc--------cc-ccCccceeeeeecccceEEEEec-cccccccCcceecCCCCCCCCCCC
Q psy282          111 IGPDEGFFKIERGNNACGKDF--------LH-FNGSETMKKILYKYGPLSVGLNS-HLIHFYNGTPIRKNDETCSPYDLG  180 (233)
Q Consensus       111 ~wge~gy~~~~~~~~~Cgi~~--------~~-~~~e~~i~~~l~~~GPv~v~i~~-~~~~~y~~gi~~~~~~~~~~~~~~  180 (233)
                      .-.|+.|||... +..|....        +. ..+.+.+++++ ..|||+++|++ ..|++|++|||.   +.|+. .++
T Consensus       314 i~~e~~YPY~~~-~~~C~~~~~~~~~i~~y~~~~~~~~l~~~l-~~GPV~v~i~~~~~f~~Yk~GIy~---~~C~~-~~n  387 (448)
T PTZ00200        314 LSSSSDVPYLAK-DGKCVVSSTKKVYIDSYLVAKGKDVLNKSL-VISPTVVYIAVSRELLKYKSGVYN---GECGK-SLN  387 (448)
T ss_pred             ccccccCCCCCC-CCCCcCCCCCeeEecceEecCHHHHHHHHH-hcCCEEEEeecccccccCCCCccc---cccCC-CCc
Confidence            345777887654 35564321        11 11234455555 57999999999 489999999985   35876 489


Q ss_pred             EEEEEEEeee--cCCcCEEEEEcCCCCCCCCCcEEEEEccC
Q psy282          181 HAVLLVGYGK--QDDIPYWLVRNSWGPIGPDEGFFKIEHTL  219 (233)
Q Consensus       181 Hav~iVGy~~--~~~~~ywivkNSWg~~WG~~Gy~~i~~~~  219 (233)
                      |||+|||||.  +++.+|||||||||++|||+|||||+|+.
T Consensus       388 HaV~lVGyG~d~~~g~~YWIIkNSWG~~WGe~GY~ri~r~~  428 (448)
T PTZ00200        388 HAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERTN  428 (448)
T ss_pred             EEEEEEEecccCCCCCceEEEEcCCCCCcccCeeEEEEeCC
Confidence            9999999984  46789999999999999999999999974

>PTZ00462 Serine-repeat antigen protein; Provisional

Probab=99.90  E-value=2e-23  Score=200.65  Aligned_cols=126  Identities=27%  Similarity=0.591  Sum_probs=99.6

Q ss_pred             CCCCCCCCCCCC--CCCCccccccCCC------------------ceeEEeCCceEEeCC----------HHHHHHHHHh
Q psy282            2 GLESEKDYPYKN--ANGEKFKCAYDKS------------------KVKLFTGKDFLHFNG----------SETMKKILYK   51 (233)
Q Consensus         2 Gi~~e~~yPY~~--~~~~~~~C~~~~~------------------~~~~~i~~~~~~v~~----------~~~i~~~l~~   51 (233)
                      ||++|++|||.+  ..+   .|+....                  ...+.+++ |..+.+          +++||++|++
T Consensus       614 gLptESdYPYt~k~~~g---~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~kg-Y~~~~s~~~~~n~d~~i~~IK~eI~~  689 (1004)
T PTZ00462        614 FLPADSNYLYNYTKVGE---DCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKA-YRAYESEHFHDKMDAFIKIIKDEIMN  689 (1004)
T ss_pred             CCcccccCCCccCCCCC---CCCCCcccccccccccccccccccccceeeccc-eEEecccccccchhhHHHHHHHHHHh
Confidence            588999999985  444   7874321                  01234456 665541          4689999999


Q ss_pred             cCCEEEEEecCCCCCcC-CceeeCCCCCCCCCCCCcEEEEEeeecc-----CCccEEEEecCCCCCCCCCcceeeec-cc
Q psy282           52 YGPLSVLLNSDLIHDYN-GTPIRKNDETCSPYDLGHAVLLVGYGKQ-----DDIPYWLVRNSWGPIGPDEGFFKIER-GN  124 (233)
Q Consensus        52 ~GPv~v~i~~~~f~~y~-~Gi~~~~~~~c~~~~~~H~v~ivG~g~~-----~~~~ywivknswg~~wge~gy~~~~~-~~  124 (233)
                      +|||+|+|++.+|+.|. +|||...  .|+....+|||+|||||.+     .+.+|||||||||+.||++||+|+.| +.
T Consensus       690 kGPVaV~IdAsdf~~Y~~sGIyv~~--~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g~  767 (1004)
T PTZ00462        690 KGSVIAYIKAENVLGYEFNGKKVQN--LCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYGP  767 (1004)
T ss_pred             cCCEEEEEEeehHHhhhcCCccccC--CCCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCCC
Confidence            99999999998788884 8998766  5877678999999999974     25799999999999999999999987 57


Q ss_pred             cccCccccc
Q psy282          125 NACGKDFLH  133 (233)
Q Consensus       125 ~~Cgi~~~~  133 (233)
                      +.|++....
T Consensus       768 n~CGin~i~  776 (1004)
T PTZ00462        768 SHCEDNFIH  776 (1004)
T ss_pred             CCCccchhe
Confidence            999987654

>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)

Probab=99.89  E-value=6e-23  Score=170.50  Aligned_cols=119  Identities=24%  Similarity=0.282  Sum_probs=100.2

Q ss_pred             CCCCCCCCCCCCCCCCCcccccc----CCCceeEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEecC-CCCCcCCceee
Q psy282            1 MGLESEKDYPYKNANGEKFKCAY----DKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD-LIHDYNGTPIR   73 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~C~~----~~~~~~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~~-~f~~y~~Gi~~   73 (233)
                      +|+++|++|||.....   .|..    ......+++.+ |..+.  ++++||++|.++|||+++|.+. .|..|++|++.
T Consensus        82 ~Gi~~e~~~Py~~~~~---~~~~~~~~~~~~~~~~~~~-y~~~~~~~~~~ik~aL~~~gPv~~~~~~~~~~~~~~~~~~~  157 (223)
T cd02619          82 KGIPPEEDYPYGAESD---GEEPKSEAALNAAKVKLKD-YRRVLKNNIEDIKEALAKGGPVVAGFDVYSGFDRLKEGIIY  157 (223)
T ss_pred             cCCCccccCCCCCCCC---CCCCCCccchhhcceeecc-eeEeCchhHHHHHHHHHHCCCEEEEEEcccchhcccCcccc
Confidence            5899999999998877   5542    23346688889 88887  6899999999999999999995 99999999973


Q ss_pred             ---CCCCCCCCCCCCcEEEEEeeeccC--CccEEEEecCCCCCCCCCcceeeecc
Q psy282           74 ---KNDETCSPYDLGHAVLLVGYGKQD--DIPYWLVRNSWGPIGPDEGFFKIERG  123 (233)
Q Consensus        74 ---~~~~~c~~~~~~H~v~ivG~g~~~--~~~ywivknswg~~wge~gy~~~~~~  123 (233)
                         .....|....++|||+|||||.+.  +.+|||+|||||+.||++||.|+.++
T Consensus       158 ~~~~~~~~~~~~~~~Hav~ivGy~~~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~  212 (223)
T cd02619         158 EEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRISYE  212 (223)
T ss_pred             ccccccccCCCccCCeEEEEEeecCCCCCCCCEEEEEeCCCCccccCCEEEEehh
Confidence               111145667789999999999886  89999999999999999999999885

Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str

>PTZ00364 dipeptidyl-peptidase I precursor; Provisional

Probab=99.89  E-value=6.4e-24  Score=196.30  Aligned_cols=89  Identities=21%  Similarity=0.408  Sum_probs=72.2

Q ss_pred             CccceeeeeecccceEEEEec-cccccccCccee-----cCC-CCCC----------CCCCCEEEEEEEeee-cCCcCEE
Q psy282          136 GSETMKKILYKYGPLSVGLNS-HLIHFYNGTPIR-----KND-ETCS----------PYDLGHAVLLVGYGK-QDDIPYW  197 (233)
Q Consensus       136 ~e~~i~~~l~~~GPv~v~i~~-~~~~~y~~gi~~-----~~~-~~~~----------~~~~~Hav~iVGy~~-~~~~~yw  197 (233)
                      ++++|+.+|.++|||+++|++ +.|++|++|++.     +.+ ..|.          ...+||||+|||||+ +++++||
T Consensus       342 ~e~~I~~eI~~~GPVsVaIda~~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YW  421 (548)
T PTZ00364        342 DPDEIIWEIYRHGPVPASVYANSDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYW  421 (548)
T ss_pred             cHHHHHHHHHHcCCeEEEEEechHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCCCceEE
Confidence            456799999999999999999 478899998863     111 1121          135799999999997 5688999


Q ss_pred             EEEcCCCC--CCCCCcEEEEEccCCCCcc
Q psy282          198 LVRNSWGP--IGPDEGFFKIEHTLRSHLT  224 (233)
Q Consensus       198 ivkNSWg~--~WG~~Gy~~i~~~~~~~~~  224 (233)
                      |||||||+  +|||+|||||+|+.+++-+
T Consensus       422 IVKNSWGt~~~WGE~GYfRI~RG~N~CGI  450 (548)
T PTZ00364        422 LVLDPWGSRRSWCDGGTRKIARGVNAYNI  450 (548)
T ss_pred             EEECCCCCCCCcccCCeEEEEcCCCcccc
Confidence            99999999  9999999999999876644

>PTZ00049 cathepsin C-like protein; Provisional

Probab=99.88  E-value=2e-23  Score=195.46  Aligned_cols=89  Identities=29%  Similarity=0.567  Sum_probs=73.3

Q ss_pred             CccceeeeeecccceEEEEecc-ccccccCcceecCC----CCCCCC--------------CCCEEEEEEEeeec--CC-
Q psy282          136 GSETMKKILYKYGPLSVGLNSH-LIHFYNGTPIRKND----ETCSPY--------------DLGHAVLLVGYGKQ--DD-  193 (233)
Q Consensus       136 ~e~~i~~~l~~~GPv~v~i~~~-~~~~y~~gi~~~~~----~~~~~~--------------~~~Hav~iVGy~~~--~~-  193 (233)
                      ++..|+.+|..+|||+++|++. .|++|++|||...+    ..|...              .++|||+|||||++  ++ 
T Consensus       556 ~E~~Im~eI~~~GPVsVsIda~~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G~e~~NHAVlIVGwG~d~enG~  635 (693)
T PTZ00049        556 GEKIMMNEIYRNGPIVASFEASPDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITGWEKVNHAIVLVGWGEEEINGK  635 (693)
T ss_pred             CHHHHHHHHHhcCCEEEEEEechhhhcCCCccccCcccccccccCCccccccccccccccccCceEEEEEEeccccCCCc
Confidence            5678999999999999999994 79999999996321    147432              36999999999975  45 


Q ss_pred             -cCEEEEEcCCCCCCCCCcEEEEEccCCCCcc
Q psy282          194 -IPYWLVRNSWGPIGPDEGFFKIEHTLRSHLT  224 (233)
Q Consensus       194 -~~ywivkNSWg~~WG~~Gy~~i~~~~~~~~~  224 (233)
                       .+|||||||||+.|||+|||||+|+.+.+.+
T Consensus       636 ~~~YWIVRNSWGt~WGenGYfKI~RG~N~CGI  667 (693)
T PTZ00049        636 LYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGI  667 (693)
T ss_pred             ccCEEEEECCCCCCcccCceEEEEcCCCccCC
Confidence             3799999999999999999999999876533

>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification

Probab=99.88  E-value=2.8e-23  Score=172.18  Aligned_cols=83  Identities=36%  Similarity=0.683  Sum_probs=74.2

Q ss_pred             CccceeeeeecccceEEEEec-c-ccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcEE
Q psy282          136 GSETMKKILYKYGPLSVGLNS-H-LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFF  213 (233)
Q Consensus       136 ~e~~i~~~l~~~GPv~v~i~~-~-~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy~  213 (233)
                      +.++|+++|.++|||+++|.+ + .|+.|++||+.  ...|.....+|||+|||||++.+++|||||||||+.||++|||
T Consensus       122 ~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~--~~~~~~~~~~Hav~iVGy~~~~~~~~wiv~NSWG~~WG~~Gy~  199 (219)
T PF00112_consen  122 DIEDIKKALMKYGPVVASIDVSSEDFQNYKSGIYD--PPDCSNESGGHAVLIVGYDDENGKGYWIVKNSWGTDWGDNGYF  199 (219)
T ss_dssp             CHHHHHHHHHHHSSEEEEEEEESHHHHTEESSEEC--STSSSSSSEEEEEEEEEEEEETTEEEEEEE-SBTTTSTBTTEE
T ss_pred             chhHHHHHHhhCceeeeeeeccccccccccceeee--ccccccccccccccccccccccceeeEeeehhhCCccCCCeEE
Confidence            467899999999999999998 4 49999999986  3367766789999999999999999999999999999999999


Q ss_pred             EEEccCC
Q psy282          214 KIEHTLR  220 (233)
Q Consensus       214 ~i~~~~~  220 (233)
                      ||+|+.+
T Consensus       200 ~i~~~~~  206 (219)
T PF00112_consen  200 RISYDYN  206 (219)
T ss_dssp             EEESSSS
T ss_pred             EEeeCCC
Confidence            9999987

; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....

>PTZ00462 Serine-repeat antigen protein; Provisional

Probab=99.86  E-value=1.4e-22  Score=194.93  Aligned_cols=80  Identities=30%  Similarity=0.549  Sum_probs=67.9

Q ss_pred             cceeeeeecccceEEEEeccccccc-cCcceecCCCCCCCCCCCEEEEEEEeeec-----CCcCEEEEEcCCCCCCCCCc
Q psy282          138 ETMKKILYKYGPLSVGLNSHLIHFY-NGTPIRKNDETCSPYDLGHAVLLVGYGKQ-----DDIPYWLVRNSWGPIGPDEG  211 (233)
Q Consensus       138 ~~i~~~l~~~GPv~v~i~~~~~~~y-~~gi~~~~~~~~~~~~~~Hav~iVGy~~~-----~~~~ywivkNSWg~~WG~~G  211 (233)
                      ..|+++|...|||+|+|++..|++| .+|++.  ...|+...++|||+|||||++     ++++|||||||||+.|||+|
T Consensus       681 ~~IK~eI~~kGPVaV~IdAsdf~~Y~~sGIyv--~~~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnG  758 (1004)
T PTZ00462        681 KIIKDEIMNKGSVIAYIKAENVLGYEFNGKKV--QNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEG  758 (1004)
T ss_pred             HHHHHHHHhcCCEEEEEEeehHHhhhcCCccc--cCCCCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCe
Confidence            4688889899999999999667777 488865  346986678999999999974     25789999999999999999


Q ss_pred             EEEEEccC
Q psy282          212 FFKIEHTL  219 (233)
Q Consensus       212 y~~i~~~~  219 (233)
                      ||||+|..
T Consensus       759 YFKI~r~g  766 (1004)
T PTZ00462        759 YFKVDMYG  766 (1004)
T ss_pred             EEEEEeCC
Confidence            99999953

>smart00645 Pept_C1 Papain family cysteine protease

Probab=99.84  E-value=3.8e-21  Score=155.46  Aligned_cols=70  Identities=34%  Similarity=0.719  Sum_probs=58.9

Q ss_pred             EEEEeccccccccCcceecCCCCCCCCCCCEEEEEEEeeec-CCcCEEEEEcCCCCCCCCCcEEEEEccC-CCC
Q psy282          151 SVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ-DDIPYWLVRNSWGPIGPDEGFFKIEHTL-RSH  222 (233)
Q Consensus       151 ~v~i~~~~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~-~~~~ywivkNSWg~~WG~~Gy~~i~~~~-~~~  222 (233)
                      ++.+.+..|++|++|||.  ...|.....+|+|+|||||.+ ++++|||||||||+.|||+|||||.|+. +.+
T Consensus        93 ~~~~~~~~f~~Y~~Gi~~--~~~~~~~~~~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~~~~c  164 (174)
T smart00645       93 SVAIDASDFQFYKSGIYD--HPGCGSGTLDHAVLIVGYGTEENGKDYWIVKNSWGTDWGENGYFRIARGKNNEC  164 (174)
T ss_pred             EEEEEcccccCCcCeEEC--CCCCCCCcccEEEEEEEEeecCCCeeEEEEECCCCCCcccCeEEEEEcCCCCcc
Confidence            555666669999999885  235765557999999999987 8899999999999999999999999987 443

>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)

Probab=99.84  E-value=1.4e-21  Score=162.31  Aligned_cols=86  Identities=27%  Similarity=0.279  Sum_probs=72.7

Q ss_pred             CccceeeeeecccceEEEEec-cccccccCccee---cCCCCCCCCCCCEEEEEEEeeecC--CcCEEEEEcCCCCCCCC
Q psy282          136 GSETMKKILYKYGPLSVGLNS-HLIHFYNGTPIR---KNDETCSPYDLGHAVLLVGYGKQD--DIPYWLVRNSWGPIGPD  209 (233)
Q Consensus       136 ~e~~i~~~l~~~GPv~v~i~~-~~~~~y~~gi~~---~~~~~~~~~~~~Hav~iVGy~~~~--~~~ywivkNSWg~~WG~  209 (233)
                      +++.|+++|.+.|||+++|.+ +.|.+|+++++.   .....|.....+|||+|||||++.  +++|||||||||+.||+
T Consensus       124 ~~~~ik~aL~~~gPv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hav~ivGy~~~~~~~~~~~i~~NSwG~~wg~  203 (223)
T cd02619         124 NIEDIKEALAKGGPVVAGFDVYSGFDRLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGD  203 (223)
T ss_pred             hHHHHHHHHHHCCCEEEEEEcccchhcccCccccccccccccCCCccCCeEEEEEeecCCCCCCCCEEEEEeCCCCcccc
Confidence            357899999999999999998 578889988762   123345556789999999999876  88999999999999999


Q ss_pred             CcEEEEEccCCC
Q psy282          210 EGFFKIEHTLRS  221 (233)
Q Consensus       210 ~Gy~~i~~~~~~  221 (233)
                      +|||||.++...
T Consensus       204 ~Gy~~i~~~~~~  215 (223)
T cd02619         204 NGYGRISYEDVY  215 (223)
T ss_pred             CCEEEEehhhhh
Confidence            999999998643

Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str

>smart00645 Pept_C1 Papain family cysteine protease

Probab=99.82  E-value=3.4e-20  Score=149.93  Aligned_cols=74  Identities=38%  Similarity=0.784  Sum_probs=64.8

Q ss_pred             EEEEecCCCCCcCCceeeCCCCCCCCCCCCcEEEEEeeecc-CCccEEEEecCCCCCCCCCcceeeeccc-cccCccc
Q psy282           56 SVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ-DDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGKDF  131 (233)
Q Consensus        56 ~v~i~~~~f~~y~~Gi~~~~~~~c~~~~~~H~v~ivG~g~~-~~~~ywivknswg~~wge~gy~~~~~~~-~~Cgi~~  131 (233)
                      ++.+.+.+|+.|++|||+.+  .|+....+|+|+|||||.+ ++.+|||++||||+.||++||+|+.++. +.|+++.
T Consensus        93 ~~~~~~~~f~~Y~~Gi~~~~--~~~~~~~~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~~~~c~i~~  168 (174)
T smart00645       93 SVAIDASDFQFYKSGIYDHP--GCGSGTLDHAVLIVGYGTEENGKDYWIVKNSWGTDWGENGYFRIARGKNNECGIEA  168 (174)
T ss_pred             EEEEEcccccCCcCeEECCC--CCCCCcccEEEEEEEEeecCCCeeEEEEECCCCCCcccCeEEEEEcCCCCccCcee
Confidence            56666668999999999886  4766668999999999987 8899999999999999999999999986 8899854

>KOG1544|consensus

Probab=99.82  E-value=4.1e-20  Score=157.73  Aligned_cols=134  Identities=22%  Similarity=0.441  Sum_probs=103.0

Q ss_pred             CCCCCCCCCCCCCCCC-Ccccc------------------ccCCC--ceeEEeCCceEEeC-CHHHHHHHHHhcCCEEEE
Q psy282            1 MGLESEKDYPYKNANG-EKFKC------------------AYDKS--KVKLFTGKDFLHFN-GSETMKKILYKYGPLSVL   58 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~-~~~~C------------------~~~~~--~~~~~i~~~~~~v~-~~~~i~~~l~~~GPv~v~   58 (233)
                      .|++...||||.+.+. ..+.|                  .....  +..+++.. =+.|+ +|++|+++|+++|||.+.
T Consensus       291 rGvVsdhCYP~~~dQ~~~~~~C~m~sR~~grgkRqat~~CPn~~~~Sn~iyq~tP-PYrVSSnE~eImkElM~NGPVQA~  369 (470)
T KOG1544|consen  291 RGVVSDHCYPFSGDQAGPAPPCMMHSRAMGRGKRQATAHCPNSYVNSNDIYQVTP-PYRVSSNEKEIMKELMENGPVQAL  369 (470)
T ss_pred             ccccccccccccCCCCCCCCCceeeccccCcccccccCcCCCcccccCceeeecC-CeeccCCHHHHHHHHHhCCChhhh
Confidence            4899999999985433 22234                  32211  13344444 33344 999999999999999999


Q ss_pred             Eec-CCCCCcCCceeeCCCCCC-----CCCCCCcEEEEEeeeccC-----CccEEEEecCCCCCCCCCcceeeecccccc
Q psy282           59 LNS-DLIHDYNGTPIRKNDETC-----SPYDLGHAVLLVGYGKQD-----DIPYWLVRNSWGPIGPDEGFFKIERGNNAC  127 (233)
Q Consensus        59 i~~-~~f~~y~~Gi~~~~~~~c-----~~~~~~H~v~ivG~g~~~-----~~~ywivknswg~~wge~gy~~~~~~~~~C  127 (233)
                      |.+ ++|..|++|||.+.+..-     ....+.|+|.|.|||++.     ..+||+.-||||+.|||+||+++.++.|.|
T Consensus       370 m~VHEDFF~YkgGiY~H~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGvNec  449 (470)
T KOG1544|consen  370 MEVHEDFFLYKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGVNEC  449 (470)
T ss_pred             hhhhhhhhhhccceeeccccccCCchhhhhcccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEEeccccch
Confidence            999 599999999998864211     123578999999999874     367999999999999999999999999999


Q ss_pred             Cccccccc
Q psy282          128 GKDFLHFN  135 (233)
Q Consensus       128 gi~~~~~~  135 (233)
                      .|++..+.
T Consensus       450 dIEsfvIg  457 (470)
T KOG1544|consen  450 DIESFVIG  457 (470)
T ss_pred             hhhHhhhh
Confidence            99887543

>KOG1544|consensus

Probab=99.78  E-value=7.8e-20  Score=156.01  Aligned_cols=89  Identities=22%  Similarity=0.472  Sum_probs=75.4

Q ss_pred             CccceeeeeecccceEEEEec-cccccccCcceecCCCCCCC-----CCCCEEEEEEEeeecC-----CcCEEEEEcCCC
Q psy282          136 GSETMKKILYKYGPLSVGLNS-HLIHFYNGTPIRKNDETCSP-----YDLGHAVLLVGYGKQD-----DIPYWLVRNSWG  204 (233)
Q Consensus       136 ~e~~i~~~l~~~GPv~v~i~~-~~~~~y~~gi~~~~~~~~~~-----~~~~Hav~iVGy~~~~-----~~~ywivkNSWg  204 (233)
                      +|++|++.|+++|||.+.|.+ .+|++|++|||.+.+.+...     ..+.|+|.|.|||++.     -++||+..||||
T Consensus       352 nE~eImkElM~NGPVQA~m~VHEDFF~YkgGiY~H~~~~~~~~e~yr~~gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG  431 (470)
T KOG1544|consen  352 NEKEIMKELMENGPVQALMEVHEDFFLYKGGIYSHTPVSLGRPERYRRHGTHSVKITGWGEETLPDGRTLKYWTAANSWG  431 (470)
T ss_pred             CHHHHHHHHHhCCChhhhhhhhhhhhhhccceeeccccccCCchhhhhcccceEEEeecccccCCCCCeeEEEEeecccc
Confidence            577899999999999999999 58999999999865444332     2579999999999863     267999999999


Q ss_pred             CCCCCCcEEEEEccCCCCcc
Q psy282          205 PIGPDEGFFKIEHTLRSHLT  224 (233)
Q Consensus       205 ~~WG~~Gy~~i~~~~~~~~~  224 (233)
                      +.|||+|||||.|+.|++-+
T Consensus       432 ~~WGE~GYFriLRGvNecdI  451 (470)
T KOG1544|consen  432 PAWGERGYFRILRGVNECDI  451 (470)
T ss_pred             cccccCceEEEeccccchhh
Confidence            99999999999999987733

>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC)

Probab=99.64  E-value=1.5e-16  Score=144.45  Aligned_cols=77  Identities=19%  Similarity=0.272  Sum_probs=63.5

Q ss_pred             eeeecccceEEEEeccccccccCcceecCCC------------------CCCCCCCCEEEEEEEeeecC-Cc-CEEEEEc
Q psy282          142 KILYKYGPLSVGLNSHLIHFYNGTPIRKNDE------------------TCSPYDLGHAVLLVGYGKQD-DI-PYWLVRN  201 (233)
Q Consensus       142 ~~l~~~GPv~v~i~~~~~~~y~~gi~~~~~~------------------~~~~~~~~Hav~iVGy~~~~-~~-~ywivkN  201 (233)
                      ++|..++||.++.++..++.|++||+.....                  .|.++..+|||+||||+.++ |. .||+|||
T Consensus       303 ~~L~~g~pV~~g~Dv~~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv~~D~~g~p~yw~VkN  382 (437)
T cd00585         303 AQLKDGEPVWFGCDVGKFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGVDLDEDGKPVKWKVEN  382 (437)
T ss_pred             HHHhcCCCEEEEEEcChhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEEEecCCCCcceEEEEc
Confidence            6777889999999998788999999842110                  14445679999999999754 66 5999999


Q ss_pred             CCCCCCCCCcEEEEEcc
Q psy282          202 SWGPIGPDEGFFKIEHT  218 (233)
Q Consensus       202 SWg~~WG~~Gy~~i~~~  218 (233)
                      |||+.||++|||+|+++
T Consensus       383 SWG~~~G~~Gy~~ms~~  399 (437)
T cd00585         383 SWGEKVGKKGYFVMSDD  399 (437)
T ss_pred             ccCCCCCCCcceehhHH
Confidence            99999999999999985

The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w

>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.48  E-value=2.8e-14  Score=124.40  Aligned_cols=78  Identities=26%  Similarity=0.359  Sum_probs=50.2

Q ss_pred             eeeeeecccceEEEEeccccccccCcceecCCCCCCCCCCCEEEEEEEeeec----------CCcCEEEEEcCCCCCCCC
Q psy282          140 MKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ----------DDIPYWLVRNSWGPIGPD  209 (233)
Q Consensus       140 i~~~l~~~GPv~v~i~~~~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~----------~~~~ywivkNSWg~~WG~  209 (233)
                      +++++...|-++..|..+...++.-.+-.+  ..-+....+|||+||||++.          .+...||||||||+.||+
T Consensus       227 i~~~~~~yg~~s~~~~id~~~~~~~~~~~~--~~~s~~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~  304 (372)
T COG4870         227 IKAMFGFYGAVSSSMYIDATNSLGICIPYP--YVDSGENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGE  304 (372)
T ss_pred             hHHHHhhhccccceeEEecccccccccCCC--CCCccccccceEEEEeccccccccccccCCCCCceEEEECcccccccc
Confidence            555555666665444442222222111111  11111467999999999974          235599999999999999


Q ss_pred             CcEEEEEccC
Q psy282          210 EGFFKIEHTL  219 (233)
Q Consensus       210 ~Gy~~i~~~~  219 (233)
                      +|||||...-
T Consensus       305 ~GYfwisY~y  314 (372)
T COG4870         305 NGYFWISYYY  314 (372)
T ss_pred             CceEEEEeee
Confidence            9999999854

>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC)

Probab=99.40  E-value=8.8e-13  Score=119.92  Aligned_cols=90  Identities=19%  Similarity=0.268  Sum_probs=70.4

Q ss_pred             eCCceEEeCCHHHHH----HHHHhcCCEEEEEecCCCCCcCCceeeCCCC------------------CCCCCCCCcEEE
Q psy282           32 TGKDFLHFNGSETMK----KILYKYGPLSVLLNSDLIHDYNGTPIRKNDE------------------TCSPYDLGHAVL   89 (233)
Q Consensus        32 i~~~~~~v~~~~~i~----~~l~~~GPv~v~i~~~~f~~y~~Gi~~~~~~------------------~c~~~~~~H~v~   89 (233)
                      ... |..++ .+.|+    ++|...+||.++.++..|+.|++||+.....                  .|.....+|||+
T Consensus       286 ~~~-y~Nvp-~d~l~~~~~~~L~~g~pV~~g~Dv~~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~  363 (437)
T cd00585         286 PIL-YLNVP-MDVLKKAAIAQLKDGEPVWFGCDVGKFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMV  363 (437)
T ss_pred             cce-EEecC-HHHHHHHHHHHHhcCCCEEEEEEcChhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEE
Confidence            345 66665 44444    6778888999999998888999999954310                  144456799999


Q ss_pred             EEeeeccC-Cc-cEEEEecCCCCCCCCCcceeeecc
Q psy282           90 LVGYGKQD-DI-PYWLVRNSWGPIGPDEGFFKIERG  123 (233)
Q Consensus        90 ivG~g~~~-~~-~ywivknswg~~wge~gy~~~~~~  123 (233)
                      |||++.+. +. .||+|+||||..||++||+++..+
T Consensus       364 ivGv~~D~~g~p~yw~VkNSWG~~~G~~Gy~~ms~~  399 (437)
T cd00585         364 LTGVDLDEDGKPVKWKVENSWGEKVGKKGYFVMSDD  399 (437)
T ss_pred             EEEEEecCCCCcceEEEEcccCCCCCCCcceehhHH
Confidence            99999854 76 599999999999999999988653

The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w

>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=2.2e-10  Score=100.28  Aligned_cols=80  Identities=25%  Similarity=0.316  Sum_probs=57.7

Q ss_pred             CHHHHHHHHHhcCCEEEEEec--CCCCCcCCceeeCCCCCCCCCCCCcEEEEEeeeccC----------CccEEEEecCC
Q psy282           41 GSETMKKILYKYGPLSVLLNS--DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD----------DIPYWLVRNSW  108 (233)
Q Consensus        41 ~~~~i~~~l~~~GPv~v~i~~--~~f~~y~~Gi~~~~~~~c~~~~~~H~v~ivG~g~~~----------~~~ywivknsw  108 (233)
                      +...|++++...|-++..|..  ..+....-+.+...    +....+|||+||||+..-          +...|||||||
T Consensus       223 dnG~i~~~~~~yg~~s~~~~id~~~~~~~~~~~~~~~----s~~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSW  298 (372)
T COG4870         223 DNGNIKAMFGFYGAVSSSMYIDATNSLGICIPYPYVD----SGENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSW  298 (372)
T ss_pred             cccchHHHHhhhccccceeEEecccccccccCCCCCC----ccccccceEEEEeccccccccccccCCCCCceEEEECcc
Confidence            555688888888877755554  34444344444443    236789999999998642          23479999999


Q ss_pred             CCCCCCCcceeeeccc
Q psy282          109 GPIGPDEGFFKIERGN  124 (233)
Q Consensus       109 g~~wge~gy~~~~~~~  124 (233)
                      |+.||++||+++...+
T Consensus       299 Gt~wG~~GYfwisY~y  314 (372)
T COG4870         299 GTNWGENGYFWISYYY  314 (372)
T ss_pred             ccccccCceEEEEeee
Confidence            9999999999987653

>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.78  E-value=4.8e-09  Score=95.68  Aligned_cols=81  Identities=21%  Similarity=0.315  Sum_probs=55.8

Q ss_pred             cceeeeeecccceEEEEeccccccccCcceecCCC----------C--------CCCCCCCEEEEEEEeee-cCCc-CEE
Q psy282          138 ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDE----------T--------CSPYDLGHAVLLVGYGK-QDDI-PYW  197 (233)
Q Consensus       138 ~~i~~~l~~~GPv~v~i~~~~~~~y~~gi~~~~~~----------~--------~~~~~~~Hav~iVGy~~-~~~~-~yw  197 (233)
                      ..+.++|..+-||-.|-++..+...+.|+....-.          .        ...+..+|||+|||.+. ++|. .+|
T Consensus       300 ~~~i~~Lk~G~~VwfgcDV~k~~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~~D~~g~p~~w  379 (438)
T PF03051_consen  300 DAAIKSLKAGYPVWFGCDVGKFFDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVDLDEDGKPVRW  379 (438)
T ss_dssp             HHHHHHHHTT--EEEEEETTTTEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEEE-TTSSEEEE
T ss_pred             HHHHHHHHcCCcEEEeccCCccccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEEeccCCCeeEE
Confidence            35666777788999999997555666776521100          0        01235699999999997 5666 499


Q ss_pred             EEEcCCCCCCCCCcEEEEEcc
Q psy282          198 LVRNSWGPIGPDEGFFKIEHT  218 (233)
Q Consensus       198 ivkNSWg~~WG~~Gy~~i~~~  218 (233)
                      +|+||||+..|.+|||.|+..
T Consensus       380 kVeNSWG~~~g~kGy~~msd~  400 (438)
T PF03051_consen  380 KVENSWGTDNGDKGYFYMSDD  400 (438)
T ss_dssp             EEE-SBTTTSTBTTEEEEEHH
T ss_pred             EEEcCCCCCCCCCcEEEECHH
Confidence            999999999999999999863

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....

>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.03  E-value=2.2e-05  Score=71.89  Aligned_cols=87  Identities=22%  Similarity=0.361  Sum_probs=58.6

Q ss_pred             eEEeC-C--HHHHHHHHHhcCCEEEEEecCCCCCcCCceeeCCCC------------------CCCCCCCCcEEEEEeee
Q psy282           36 FLHFN-G--SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDE------------------TCSPYDLGHAVLLVGYG   94 (233)
Q Consensus        36 ~~~v~-~--~~~i~~~l~~~GPv~v~i~~~~f~~y~~Gi~~~~~~------------------~c~~~~~~H~v~ivG~g   94 (233)
                      |.+++ +  .+.+.++|...-||..+-++..+...+.||.....-                  .-.....+||++|+|..
T Consensus       290 ylNvpid~lk~~~i~~Lk~G~~VwfgcDV~k~~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~  369 (438)
T PF03051_consen  290 YLNVPIDELKDAAIKSLKAGYPVWFGCDVGKFFDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVD  369 (438)
T ss_dssp             EEE--HHHHHHHHHHHHHTT--EEEEEETTTTEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEE
T ss_pred             EeccCHHHHHHHHHHHHHcCCcEEEeccCCccccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEE
Confidence            56666 1  245566777767999999997666778888854310                  00113569999999999


Q ss_pred             c-cCCcc-EEEEecCCCCCCCCCcceeeec
Q psy282           95 K-QDDIP-YWLVRNSWGPIGPDEGFFKIER  122 (233)
Q Consensus        95 ~-~~~~~-ywivknswg~~wge~gy~~~~~  122 (233)
                      . +++.| +|.|+||||...|.+||+.+..
T Consensus       370 ~D~~g~p~~wkVeNSWG~~~g~kGy~~msd  399 (438)
T PF03051_consen  370 LDEDGKPVRWKVENSWGTDNGDKGYFYMSD  399 (438)
T ss_dssp             E-TTSSEEEEEEE-SBTTTSTBTTEEEEEH
T ss_pred             eccCCCeeEEEEEcCCCCCCCCCcEEEECH
Confidence            7 56765 8999999999999999987653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....

>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]

Probab=97.16  E-value=9.4e-05  Score=64.66  Aligned_cols=74  Identities=18%  Similarity=0.225  Sum_probs=49.5

Q ss_pred             eecccceEEEEeccccccccCcceecCCC------------------CCCCCCCCEEEEEEEeee-cCCc-CEEEEEcCC
Q psy282          144 LYKYGPLSVGLNSHLIHFYNGTPIRKNDE------------------TCSPYDLGHAVLLVGYGK-QDDI-PYWLVRNSW  203 (233)
Q Consensus       144 l~~~GPv~v~i~~~~~~~y~~gi~~~~~~------------------~~~~~~~~Hav~iVGy~~-~~~~-~ywivkNSW  203 (233)
                      +...-+|=+|-++..++-.+.||+.-...                  ..+.+.+.|||+|.|.+. ++|. --|.|.|||
T Consensus       308 ~qagetVwFG~dvgq~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~d~~g~p~rwkVENSW  387 (444)
T COG3579         308 MQAGETVWFGCDVGQLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDLDETGNPLRWKVENSW  387 (444)
T ss_pred             HhcCCcEEeecCchhhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhccccccCCCceeeEeeccc
Confidence            33455676776665555555555421100                  011234689999999985 4443 389999999


Q ss_pred             CCCCCCCcEEEEEc
Q psy282          204 GPIGPDEGFFKIEH  217 (233)
Q Consensus       204 g~~WG~~Gy~~i~~  217 (233)
                      |..=|.+|||-++.
T Consensus       388 G~d~G~~GyfvaSd  401 (444)
T COG3579         388 GKDVGKKGYFVASD  401 (444)
T ss_pred             ccccCCCceEeehH
Confidence            99999999998865

>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]

Probab=93.84  E-value=0.05  Score=48.01  Aligned_cols=80  Identities=21%  Similarity=0.323  Sum_probs=54.7

Q ss_pred             CHHHHHHH----HHhcCCEEEEEecCCCCCcCCceeeCCC-------------C-----CCCCCCCCcEEEEEeeecc-C
Q psy282           41 GSETMKKI----LYKYGPLSVLLNSDLIHDYNGTPIRKND-------------E-----TCSPYDLGHAVLLVGYGKQ-D   97 (233)
Q Consensus        41 ~~~~i~~~----l~~~GPv~v~i~~~~f~~y~~Gi~~~~~-------------~-----~c~~~~~~H~v~ivG~g~~-~   97 (233)
                      +.+.+|++    +...-||-.+-++..|+.-+.||.....             +     +.+.....||++|.|...+ +
T Consensus       296 ~me~lkkl~~~q~qagetVwFG~dvgq~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~d~~  375 (444)
T COG3579         296 DMERLKKLAIKQMQAGETVWFGCDVGQLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDLDET  375 (444)
T ss_pred             cHHHHHHHHHHHHhcCCcEEeecCchhhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhccccccC
Confidence            44445443    3444588888777788888888764321             0     1122345799999999864 4


Q ss_pred             Ccc-EEEEecCCCCCCCCCcceee
Q psy282           98 DIP-YWLVRNSWGPIGPDEGFFKI  120 (233)
Q Consensus        98 ~~~-ywivknswg~~wge~gy~~~  120 (233)
                      +.| -|-|+||||..-|.+||+-.
T Consensus       376 g~p~rwkVENSWG~d~G~~Gyfva  399 (444)
T COG3579         376 GNPLRWKVENSWGKDVGKKGYFVA  399 (444)
T ss_pred             CCceeeEeecccccccCCCceEee
Confidence            444 59999999999999999754

>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A

Probab=89.70  E-value=0.26  Score=36.98  Aligned_cols=56  Identities=27%  Similarity=0.417  Sum_probs=32.1

Q ss_pred             ccceeeeeecccceEEEEeccccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCC
Q psy282          137 SETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSW  203 (233)
Q Consensus       137 e~~i~~~l~~~GPv~v~i~~~~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSW  203 (233)
                      ...+++.|.+..||.+.+....-.. .+..+.       .....|.|+|+||+++.   +++|..+|
T Consensus        89 ~~~i~~~i~~G~Pvi~~~~~~~~~~-~~~~~~-------~~~~~H~vvi~Gy~~~~---~~~v~DP~  144 (144)
T PF13529_consen   89 FDDIKQEIDAGRPVIVSVNSGWRPP-NGDGYD-------GTYGGHYVVIIGYDEDG---YVYVNDPW  144 (144)
T ss_dssp             HHHHHHHHHTT--EEEEEETTSS---TTEEEE-------E-TTEEEEEEEEE-SSE----EEEE-TT
T ss_pred             HHHHHHHHHCCCcEEEEEEcccccC-CCCCcC-------CCcCCEEEEEEEEeCCC---EEEEeCCC
Confidence            4678888988889999987421111 111111       12468999999999643   78887776

>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A

Probab=88.23  E-value=1.9  Score=32.10  Aligned_cols=55  Identities=27%  Similarity=0.439  Sum_probs=32.1

Q ss_pred             CHHHHHHHHHhcCCEEEEEecC--CCCCcCCceeeCCCCCCCCCCCCcEEEEEeeeccCCccEEEEecCC
Q psy282           41 GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSW  108 (233)
Q Consensus        41 ~~~~i~~~l~~~GPv~v~i~~~--~f~~y~~Gi~~~~~~~c~~~~~~H~v~ivG~g~~~~~~ywivknsw  108 (233)
                      +.+.|+++|....||.+.+...  ..   ....+.       .....|.|+|+||..+.   ++++...|
T Consensus        88 ~~~~i~~~i~~G~Pvi~~~~~~~~~~---~~~~~~-------~~~~~H~vvi~Gy~~~~---~~~v~DP~  144 (144)
T PF13529_consen   88 SFDDIKQEIDAGRPVIVSVNSGWRPP---NGDGYD-------GTYGGHYVVIIGYDEDG---YVYVNDPW  144 (144)
T ss_dssp             -HHHHHHHHHTT--EEEEEETTSS-----TTEEEE-------E-TTEEEEEEEEE-SSE----EEEE-TT
T ss_pred             cHHHHHHHHHCCCcEEEEEEcccccC---CCCCcC-------CCcCCEEEEEEEEeCCC---EEEEeCCC
Confidence            7899999999988999999742  12   111122       23468999999997543   55554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	233
1m6d_A	214	Crystal Structure Of Human Cathepsin F Length = 214		5e-19
1m6d_A	214	Crystal Structure Of Human Cathepsin F Length = 214		1e-12
2p7u_A	215	The Crystal Structure Of Rhodesain, The Major Cyste		3e-15
2p7u_A	215	The Crystal Structure Of Rhodesain, The Major Cyste		2e-08
8pch_A	220	Crystal Structure Of Porcine Cathepsin H Determined		6e-15
8pch_A	220	Crystal Structure Of Porcine Cathepsin H Determined		2e-09
2o6x_A	310	Crystal Structure Of Procathepsin L1 From Fasciola		3e-14
2o6x_A	310	Crystal Structure Of Procathepsin L1 From Fasciola		2e-08
3qj3_A	331	Structure Of Digestive Procathepsin L2 Proteinase F		5e-13
3qj3_A	331	Structure Of Digestive Procathepsin L2 Proteinase F		2e-07
2f7d_A	215	A Mutant Rabbit Cathepsin K With A Nitrile Inhibito		2e-12
2f7d_A	215	A Mutant Rabbit Cathepsin K With A Nitrile Inhibito		4e-09
7pck_A	314	Crystal Structure Of Wild Type Human Procathepsin K		2e-12
7pck_A	314	Crystal Structure Of Wild Type Human Procathepsin K		9e-09
1mem_A	215	Crystal Structure Of Cathepsin K Complexed With A P		2e-12
1mem_A	215	Crystal Structure Of Cathepsin K Complexed With A P		8e-09
3ovz_A	213	Cathepsin K In Complex With A Covalent Inhibitor Wi		3e-12
3ovz_A	213	Cathepsin K In Complex With A Covalent Inhibitor Wi		7e-09
1u9v_A	217	Crystal Structure Of The Cysteine Protease Human Ca		3e-12
1u9v_A	217	Crystal Structure Of The Cysteine Protease Human Ca		8e-09
1snk_A	214	Cathepsin K Complexed With Carbamate Derivatized No		3e-12
1snk_A	214	Cathepsin K Complexed With Carbamate Derivatized No		9e-09
3h7d_A	215	The Crystal Structure Of The Cathepsin K Variant M5		5e-12
3h7d_A	215	The Crystal Structure Of The Cathepsin K Variant M5		2e-08
2b1m_A	246	Crystal Structure Of A Papain-Fold Protein Without		5e-12
2b1m_A	246	Crystal Structure Of A Papain-Fold Protein Without		2e-09
1vsn_A	215	Crystal Structure Of A Potent Small Molecule Inhibi		7e-12
1vsn_A	215	Crystal Structure Of A Potent Small Molecule Inhibi		1e-08
3qt4_A	329	Structure Of Digestive Procathepsin L 3 Of Tenebrio		6e-11
3qt4_A	329	Structure Of Digestive Procathepsin L 3 Of Tenebrio		7e-08
1ewp_A	215	Cruzain Bound To Mor-Leu-Hpq Length = 215		9e-11
1ewp_A	215	Cruzain Bound To Mor-Leu-Hpq Length = 215		8e-07
1aim_A	215	Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluor		1e-10
1aim_A	215	Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluor		1e-06
3iut_A	221	The Crystal Structure Of Cruzain In Complex With A		2e-10
3iut_A	221	The Crystal Structure Of Cruzain In Complex With A		2e-06
3hd3_A	215	High Resolution Crystal Structure Of Cruzain Bound		2e-10
3hd3_A	215	High Resolution Crystal Structure Of Cruzain Bound		2e-06
1jqp_A	438	Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric		2e-09
1jqp_A	438	Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric		4e-09
3h6s_A	221	Strucure Of Clitocypin - Cathepsin V Complex Length		3e-09
3h6s_A	221	Strucure Of Clitocypin - Cathepsin V Complex Length		1e-07
1fh0_A	221	Crystal Structure Of Human Cathepsin V Complexed Wi		3e-09
1fh0_A	221	Crystal Structure Of Human Cathepsin V Complexed Wi		1e-07
1glo_A	217	Crystal Structure Of Cys25ser Mutant Of Human Cathe		4e-09
1glo_A	217	Crystal Structure Of Cys25ser Mutant Of Human Cathe		8e-07
2c0y_A	315	The Crystal Structure Of A Cys25ala Mutant Of Human		5e-09
2c0y_A	315	The Crystal Structure Of A Cys25ala Mutant Of Human		1e-06
1ms6_A	222	Dipeptide Nitrile Inhibitor Bound To Cathepsin S. L		6e-09
1ms6_A	222	Dipeptide Nitrile Inhibitor Bound To Cathepsin S. L		1e-06
3kwn_A	219	Cathepsin S In Complex With Thioether Acetamide P3		9e-09
3kwn_A	219	Cathepsin S In Complex With Thioether Acetamide P3		8e-07
3iej_A	222	Pyrazole-Based Cathepsin S Inhibitors With Arylalky		9e-09
3iej_A	222	Pyrazole-Based Cathepsin S Inhibitors With Arylalky		8e-07
3mpe_A	220	Crystal Structure Of Human Cathepsin-S C25s Mutant		9e-09
3mpe_A	220	Crystal Structure Of Human Cathepsin-S C25s Mutant		9e-07
2f1g_A	220	Cathepsin S In Complex With Non-Covalent 2-(Benzoxa		9e-09
2f1g_A	220	Cathepsin S In Complex With Non-Covalent 2-(Benzoxa		8e-07
1npz_A	217	Crystal Structures Of Cathepsin S Inhibitor Complex		1e-08
1npz_A	217	Crystal Structures Of Cathepsin S Inhibitor Complex		8e-07
2fq9_A	225	Cathepsin S With Nitrile Inhibitor Length = 225		1e-08
2fq9_A	225	Cathepsin S With Nitrile Inhibitor Length = 225		8e-07
3n3g_A	217	4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitri		1e-08
3n3g_A	217	4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitri		8e-07
3ovx_A	218	Cathepsin S In Complex With A Covalent Inhibitor Wi		1e-08
3ovx_A	218	Cathepsin S In Complex With A Covalent Inhibitor Wi		8e-07
1mir_A	322	Rat Procathepsin B Length = 322		1e-08
1mir_A	322	Rat Procathepsin B Length = 322		1e-05
1cpj_A	260	Crystal Structures Of Recombinant Rat Cathepsin B A		1e-08
1cpj_A	260	Crystal Structures Of Recombinant Rat Cathepsin B A		9e-06
1cte_A	254	Crystal Structures Of Recombinant Rat Cathepsin B A		1e-08
1cte_A	254	Crystal Structures Of Recombinant Rat Cathepsin B A		9e-06
2g6d_A	217	Human Cathepsin S Mutant With Vinyl Sulfone Inhibit		2e-08
2g6d_A	217	Human Cathepsin S Mutant With Vinyl Sulfone Inhibit		3e-06
2act_A	220	Crystallographic Refinement Of The Structure Of Act		2e-08
2act_A	220	Crystallographic Refinement Of The Structure Of Act		1e-05
1aec_A	218	Crystal Structure Of Actinidin-E-64 Complex+ Length		2e-08
1aec_A	218	Crystal Structure Of Actinidin-E-64 Complex+ Length		1e-05
3p5u_A	220	Actinidin From Actinidia Arguta Planch (Sarusashi)		4e-08
3p5u_A	220	Actinidin From Actinidia Arguta Planch (Sarusashi)		3e-06
3p5w_A	220	Actinidin From Actinidia Arguta Planch (Sarusashi)		5e-08
3p5w_A	220	Actinidin From Actinidia Arguta Planch (Sarusashi)		3e-06
2fye_A	217	Mutant Human Cathepsin S With Irreversible Inhibito		6e-08
2fye_A	217	Mutant Human Cathepsin S With Irreversible Inhibito		3e-06
3pdf_A	441	Discovery Of Novel Cyanamide-Based Inhibitors Of Ca		6e-08
3pdf_A	441	Discovery Of Novel Cyanamide-Based Inhibitors Of Ca		1e-05
1qdq_A	253	X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074		9e-08
1qdq_A	253	X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074		2e-05
1pbh_A	317	Crystal Structure Of Human Recombinant Procathepsin		1e-07
1pbh_A	317	Crystal Structure Of Human Recombinant Procathepsin		3e-05
1sp4_B	205	Crystal Structure Of Ns-134 In Complex With Bovine		1e-07
1sp4_B	205	Crystal Structure Of Ns-134 In Complex With Bovine		2e-05
3cbj_A	266	Chagasin-cathepsin B Complex Length = 266		1e-07
3cbj_A	266	Chagasin-cathepsin B Complex Length = 266		3e-05
3kse_A	220	Unreduced Cathepsin L In Complex With Stefin A Leng		1e-07
3kse_A	220	Unreduced Cathepsin L In Complex With Stefin A Leng		5e-07
1ito_A	256	Crystal Structure Analysis Of Bovine Spleen Catheps		1e-07
1ito_A	256	Crystal Structure Analysis Of Bovine Spleen Catheps		3e-05
3ai8_B	256	Cathepsin B In Complex With The Nitroxoline Length		1e-07
3ai8_B	256	Cathepsin B In Complex With The Nitroxoline Length		3e-05
1gmy_A	261	Cathepsin B Complexed With Dipeptidyl Nitrile Inhib		1e-07
1gmy_A	261	Cathepsin B Complexed With Dipeptidyl Nitrile Inhib		3e-05
3qsd_A	254	Structure Of Cathepsin B1 From Schistosoma Mansoni		1e-07
3qsd_A	254	Structure Of Cathepsin B1 From Schistosoma Mansoni		8e-07
3k9m_A	254	Cathepsin B In Complex With Stefin A Length = 254		1e-07
3k9m_A	254	Cathepsin B In Complex With Stefin A Length = 254		3e-05
1huc_B	205	The Refined 2.15 Angstroms X-Ray Crystal Structure		1e-07
1huc_B	205	The Refined 2.15 Angstroms X-Ray Crystal Structure		3e-05
1cs8_A	316	Crystal Structure Of Procathepsin L Length = 316		3e-07
1cs8_A	316	Crystal Structure Of Procathepsin L Length = 316		2e-06
3bcn_A	209	Crystal Structure Of A Papain-Like Cysteine Proteas		4e-07
1deu_A	277	Crystal Structure Of Human Procathepsin X: A Cystei		4e-07
1deu_A	277	Crystal Structure Of Human Procathepsin X: A Cystei		5e-07
1ef7_A	242	Crystal Structure Of Human Cathepsin X Length = 242		4e-07
3iv2_A	220	Crystal Structure Of Mature Apo-Cathepsin L C25a Mu		4e-07
3iv2_A	220	Crystal Structure Of Mature Apo-Cathepsin L C25a Mu		2e-06
3bc3_A	220	Exploring Inhibitor Binding At The S Subsites Of Ca		4e-07
3bc3_A	220	Exploring Inhibitor Binding At The S Subsites Of Ca		2e-06
2nqd_B	221	Crystal Structure Of Cysteine Protease Inhibitor, C		4e-07
2nqd_B	221	Crystal Structure Of Cysteine Protease Inhibitor, C		2e-06
3of8_A	221	Structural Basis For Reversible And Irreversible In		4e-07
3of8_A	221	Structural Basis For Reversible And Irreversible In		2e-06
3hwn_A	258	Cathepsin L With Az13010160 Length = 258		4e-07
3hwn_A	258	Cathepsin L With Az13010160 Length = 258		2e-06
3hha_A	220	Crystal Structure Of Cathepsin L In Complex With Az		5e-07
3hha_A	220	Crystal Structure Of Cathepsin L In Complex With Az		2e-06
3h89_A	220	A Combined Crystallographic And Molecular Dynamics		5e-07
3h89_A	220	A Combined Crystallographic And Molecular Dynamics		2e-06
2pns_A	208	1.9 Angstrom Resolution Crystal Structure Of A Plan		6e-07
4hwy_A	340	Trypanosoma Brucei Procathepsin B Solved From 40 Fs		6e-07
1cjl_A	312	Crystal Structure Of A Cysteine Protease Proform Le		7e-07
1cjl_A	312	Crystal Structure Of A Cysteine Protease Proform Le		4e-06
3mor_A	317	Crystal Structure Of Cathepsin B From Trypanosoma B		7e-07
3hhi_A	325	Crystal Structure Of Cathepsin B From T. Brucei In		7e-07
2fo5_A	262	Crystal Structure Of Recombinant Barley Cysteine En		1e-06
2fo5_A	262	Crystal Structure Of Recombinant Barley Cysteine En		1e-04
1iwd_A	215	Proposed Amino Acid Sequence And The 1.63 Angstrom		1e-06
1iwd_A	215	Proposed Amino Acid Sequence And The 1.63 Angstrom		3e-05
1k3b_C	69	Crystal Structure Of Human Dipeptidyl Peptidase I (		2e-06
1k3b_C	69	Crystal Structure Of Human Dipeptidyl Peptidase I (		4e-04
3u8e_A	222	Crystal Structure Of Cysteine Protease From Bulbs O		2e-06
3ch2_X	265	Crystal Structure Analysis Of Sera5e From Plasmodiu		2e-06
3ch2_X	265	Crystal Structure Analysis Of Sera5e From Plasmodiu		1e-05
2wbf_X	265	Crystal Structure Analysis Of Sera5e From Plasmodiu		3e-06
2wbf_X	265	Crystal Structure Analysis Of Sera5e From Plasmodiu		2e-05
1s4v_A	229	The 2.0 A Crystal Structure Of The Kdel-Tailed Cyst		7e-06
1s4v_A	229	The 2.0 A Crystal Structure Of The Kdel-Tailed Cyst		3e-04
1yal_A	218	Carica Papaya Chymopapain At 1.7 Angstroms Resoluti		1e-05
1cqd_A	221	The 2.1 Angstrom Structure Of A Cysteine Protease W		3e-05
1cqd_A	221	The 2.1 Angstrom Structure Of A Cysteine Protease W		3e-04
3f75_A	224	Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In		4e-05
2bdz_A	214	Mexicain From Jacaratia Mexicana Length = 214		7e-05
1o0e_A	208	1.9 Angstrom Crystal Structure Of A Plant Cysteine		2e-04
3d6s_A	223	Crystal Structure Of Mite Allergen Der F 1 Length =		3e-04
2vhs_A	217	Cathsilicatein, A Chimera Length = 217		4e-04
1xkg_A	312	Crystal Structure Of The Major House Dust Mite Alle		9e-04

>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F Length = 214

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 72/131 (54%), Gaps = 3/131 (2%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
           GLE+E DY Y+   G    C +   K K++           + +   L K GP+SV +N+
Sbjct: 80  GLETEDDYSYQ---GHMQSCQFSAEKAKVYIQDSVELSQNEQKLAAWLAKRGPISVAINA 136
Query: 62  DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIE 121
             +  Y     R     CSP+ + HAVLLVGYG++ D+P+W ++NSWG    ++G++ + 
Sbjct: 137 FGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLH 196
Query: 122 RGNNACGKDFL 132
           RG+ ACG + +
Sbjct: 197 RGSGACGVNTM 207

>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F Length = 214

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 138 ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYW 197
           + +   L K GP+SV +N+  + FY     R     CSP+ + HAVLLVGYG++ D+P+W
Sbjct: 118 QKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFW 177
Query: 198 LVRNSWGPIGPDEGFF 213
            ++NSWG    ++G++
Sbjct: 178 AIKNSWGTDWGEKGYY 193

>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine Protease Of T. Brucei Rhodesiense, Bound To Inhibitor K777 Length = 215

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 4/123 (3%)
Query: 5   SEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLI 64
           +E  YPY + NGE+ +C  +  ++              + +   L + GPL++ +++   
Sbjct: 85  TEASYPYVSGNGEQPQCQMNGHEIGAAITDHVDLPQDEDAIAAYLAENGPLAIAVDATSF 144
Query: 65  HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN 124
            DYNG  +     +C+   L H VLLVGY    + PYW+++NSW  +  ++G+ +IE+G 
Sbjct: 145 MDYNGGILT----SCTSEQLDHGVLLVGYNDASNPPYWIIKNSWSNMWGEDGYIRIEKGT 200
Query: 125 NAC 127
           N C
Sbjct: 201 NQC 203

>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine Protease Of T. Brucei Rhodesiense, Bound To Inhibitor K777 Length = 215

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Query: 138 ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYW 197
           + +   L + GPL++ +++     YNG  +     +C+   L H VLLVGY    + PYW
Sbjct: 123 DAIAAYLAENGPLAIAVDATSFMDYNGGILT----SCTSEQLDHGVLLVGYNDASNPPYW 178
Query: 198 LVRNSWGPIGPDEGFFKIEHTLRSHLTH 225
           +++NSW  +  ++G+ +IE      L +
Sbjct: 179 IIKNSWSNMWGEDGYIRIEKGTNQCLMN 206

>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1 Angstrom Resolution: Location Of The Mini-Chain C-Terminal Carboxyl Group Defines Cathepsin H Aminopeptidase Function Length = 220

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 70/135 (51%), Gaps = 17/135 (12%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSV-- 57
           G+  E  YPYK   G+   C +   K   F  KD   +  N  E M + +  Y P+S   
Sbjct: 83  GIMGEDTYPYK---GQDDHCKFQPDKAIAFV-KDVANITMNDEEAMVEAVALYNPVSFAF 138
Query: 58  -LLNSDLIHD---YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGP 113
            + N  L++    Y+ T   K     +P  + HAVL VGYG+++ IPYW+V+NSWGP   
Sbjct: 139 EVTNDFLMYRKGIYSSTSCHK-----TPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWG 193
Query: 114 DEGFFKIERGNNACG 128
             G+F IERG N CG
Sbjct: 194 MNGYFLIERGKNMCG 208

>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1 Angstrom Resolution: Location Of The Mini-Chain C-Terminal Carboxyl Group Defines Cathepsin H Aminopeptidase Function Length = 220

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 49/92 (53%), Gaps = 11/92 (11%)
Query: 132 LHFNGSETMKKILYKYGPLSVGL---NSHLIH---FYNGTPIRKNDETCSPYDLGHAVLL 185
           +  N  E M + +  Y P+S      N  L++    Y+ T   K     +P  + HAVL 
Sbjct: 116 ITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHK-----TPDKVNHAVLA 170
Query: 186 VGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEH 217
           VGYG+++ IPYW+V+NSWGP     G+F IE 
Sbjct: 171 VGYGEENGIPYWIVKNSWGPQWGMNGYFLIER 202

>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola Hepatica Length = 310

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 67/131 (51%), Gaps = 10/131 (7%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
           GLE+E  YPY    G+   C Y+K   V   TG   +H      +K ++   GP +V ++
Sbjct: 172 GLETESSYPYTAVEGQ---CRYNKQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVD 228
Query: 61  --SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFF 118
             SD +   +G       +TCSP  + HAVL VGYG Q    YW+V+NSWG    + G+ 
Sbjct: 229 VESDFMMYRSGI---YQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGYI 285
Query: 119 KIERGN-NACG 128
           ++ R   N CG
Sbjct: 286 RMVRNRGNMCG 296

>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola Hepatica Length = 310

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 6/84 (7%)
Query: 135 NGSET-MKKILYKYGPLSVGLN--SHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 191
           +GSE  +K ++   GP +V ++  S  + + +G       +TCSP  + HAVL VGYG Q
Sbjct: 207 SGSEVELKNLVGAEGPAAVAVDVESDFMMYRSGI---YQSQTCSPLRVNHAVLAVGYGTQ 263
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKI 215
               YW+V+NSWG    + G+ ++
Sbjct: 264 GGTDYWIVKNSWGLSWGERGYIRM 287

>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From Tenebrio Molitor Larval Midgut Length = 331

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 70/130 (53%), Gaps = 8/130 (6%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKL-FTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
           G++SE  YPY+ A+G    C YD ++V    +G  +L       +  ++   GP++V  +
Sbjct: 197 GIDSEGAYPYEMADG---NCHYDPNQVAARLSGYVYLSGPDENMLADMVATKGPVAVAFD 253
Query: 61  SD-LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
           +D     Y+G      + TC      HAVL+VGYG ++   YWLV+NSWG     +G+FK
Sbjct: 254 ADDPFGSYSGGVYY--NPTCETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFK 311
Query: 120 IER-GNNACG 128
           I R  NN CG
Sbjct: 312 IARNANNHCG 321

>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From Tenebrio Molitor Larval Midgut Length = 331

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 173 TCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL-THDIPGVP 231
           TC      HAVL+VGYG ++   YWLV+NSWG     +G+FKI     +H     +  VP
Sbjct: 270 TCETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIARNANNHCGIAGVASVP 329
Query: 232 T 232
           T
Sbjct: 330 T 330

>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor Length = 215

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 5/129 (3%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
           G++SE  YPY    G+   C Y+ + K     G   +     + +K+ + + GP+SV ++
Sbjct: 80  GIDSEDAYPYV---GQDESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAID 136
Query: 61  SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
           + L      +     DE CS  +L HAVL VGYG Q    +W+++NSWG    ++G+  +
Sbjct: 137 ASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYGIQKGNKHWIIKNSWGESWGNKGYILM 196
Query: 121 ERG-NNACG 128
            R  NNACG
Sbjct: 197 ARNKNNACG 205

>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor Length = 215

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 138 ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYW 197
           + +K+ + + GP+SV +++ L  F   +     DE CS  +L HAVL VGYG Q    +W
Sbjct: 119 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYGIQKGNKHW 178
Query: 198 LVRNSWGPIGPDEGFF 213
           +++NSWG    ++G+ 
Sbjct: 179 IIKNSWGESWGNKGYI 194

>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K Length = 314

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 5/129 (3%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
           G++SE  YPY    G++  C Y+ + K     G   +     + +K+ + + GP+SV ++
Sbjct: 179 GIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAID 235
Query: 61  SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
           + L      +     DE+C+  +L HAVL VGYG Q    +W+++NSWG    ++G+  +
Sbjct: 236 ASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILM 295
Query: 121 ERG-NNACG 128
            R  NNACG
Sbjct: 296 ARNKNNACG 304

>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K Length = 314

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 46/76 (60%)
Query: 138 ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYW 197
           + +K+ + + GP+SV +++ L  F   +     DE+C+  +L HAVL VGYG Q    +W
Sbjct: 218 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHW 277
Query: 198 LVRNSWGPIGPDEGFF 213
           +++NSWG    ++G+ 
Sbjct: 278 IIKNSWGENWGNKGYI 293

>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent Vinyl Sulfone Inhibitor Length = 215

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 5/129 (3%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
           G++SE  YPY    G++  C Y+ + K     G   +     + +K+ + + GP+SV ++
Sbjct: 80  GIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAID 136
Query: 61  SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
           + L      +     DE+C+  +L HAVL VGYG Q    +W+++NSWG    ++G+  +
Sbjct: 137 ASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILM 196
Query: 121 ERG-NNACG 128
            R  NNACG
Sbjct: 197 ARNKNNACG 205

>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent Vinyl Sulfone Inhibitor Length = 215

Iteration: 1
 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 46/76 (60%)
Query: 138 ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYW 197
           + +K+ + + GP+SV +++ L  F   +     DE+C+  +L HAVL VGYG Q    +W
Sbjct: 119 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHW 178
Query: 198 LVRNSWGPIGPDEGFF 213
           +++NSWG    ++G+ 
Sbjct: 179 IIKNSWGENWGNKGYI 194

>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A Ketoamide Warhead Length = 213

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 5/129 (3%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
           G++SE  YPY    G++  C Y+ + K     G   +     + +K+ + + GP+SV ++
Sbjct: 78  GIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAID 134
Query: 61  SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
           + L      +     DE+C+  +L HAVL VGYG Q    +W+++NSWG    ++G+  +
Sbjct: 135 ASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILM 194
Query: 121 ERG-NNACG 128
            R  NNACG
Sbjct: 195 ARNKNNACG 203

>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A Ketoamide Warhead Length = 213

Iteration: 1
 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 46/76 (60%)
Query: 138 ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYW 197
           + +K+ + + GP+SV +++ L  F   +     DE+C+  +L HAVL VGYG Q    +W
Sbjct: 117 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHW 176
Query: 198 LVRNSWGPIGPDEGFF 213
           +++NSWG    ++G+ 
Sbjct: 177 IIKNSWGENWGNKGYI 192

>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin K In Complex With The Covalent Inhibitor Nvp-Abe854 Length = 217

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 5/129 (3%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
           G++SE  YPY    G++  C Y+ + K     G   +     + +K+ + + GP+SV ++
Sbjct: 82  GIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAID 138
Query: 61  SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
           + L      +     DE+C+  +L HAVL VGYG Q    +W+++NSWG    ++G+  +
Sbjct: 139 ASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILM 198
Query: 121 ERG-NNACG 128
            R  NNACG
Sbjct: 199 ARNKNNACG 207

>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin K In Complex With The Covalent Inhibitor Nvp-Abe854 Length = 217

Iteration: 1
 Score = 57.0 bits (136), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 46/76 (60%)
Query: 138 ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYW 197
           + +K+ + + GP+SV +++ L  F   +     DE+C+  +L HAVL VGYG Q    +W
Sbjct: 121 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHW 180
Query: 198 LVRNSWGPIGPDEGFF 213
           +++NSWG    ++G+ 
Sbjct: 181 IIKNSWGENWGNKGYI 196

>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized Norleucine Aldehyde Length = 214

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 5/129 (3%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
           G++SE  YPY    G++  C Y+ + K     G   +     + +K+ + + GP+SV ++
Sbjct: 79  GIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAID 135
Query: 61  SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
           + L      +     DE+C+  +L HAVL VGYG Q    +W+++NSWG    ++G+  +
Sbjct: 136 ASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILM 195
Query: 121 ERG-NNACG 128
            R  NNACG
Sbjct: 196 ARNKNNACG 204

>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized Norleucine Aldehyde Length = 214

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 46/76 (60%)
Query: 138 ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYW 197
           + +K+ + + GP+SV +++ L  F   +     DE+C+  +L HAVL VGYG Q    +W
Sbjct: 118 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHW 177
Query: 198 LVRNSWGPIGPDEGFF 213
           +++NSWG    ++G+ 
Sbjct: 178 IIKNSWGENWGNKGYI 193

>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In Compl Chondroitin-4-Sulfate Length = 215

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 69/129 (53%), Gaps = 5/129 (3%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
           G++SE  YPY    G++  C Y+ + K     G   +     + +K+ + + GP+SV ++
Sbjct: 80  GIDSEDAYPYV---GQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAID 136
Query: 61  SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
           + L      +     DE+C+  +L HAVL VGYG+     +W+++NSWG      G+ K+
Sbjct: 137 ASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGESKGNKHWIIKNSWGENWGMGGYIKM 196
Query: 121 ERG-NNACG 128
            R  NNACG
Sbjct: 197 ARNKNNACG 205

>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In Compl Chondroitin-4-Sulfate Length = 215

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 138 ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYW 197
           + +K+ + + GP+SV +++ L  F   +     DE+C+  +L HAVL VGYG+     +W
Sbjct: 119 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGESKGNKHW 178
Query: 198 LVRNSWGPIGPDEGFFKIEH 217
           +++NSWG      G+ K+  
Sbjct: 179 IIKNSWGENWGMGGYIKMAR 198

>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The Catalytic Cysteine From Seeds Of Pachyrhizus Erosus Length = 246

Iteration: 1
 Score = 67.8 bits (164), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 49/154 (31%), Positives = 77/154 (50%), Gaps = 17/154 (11%)
Query: 2   GLESEKDYPYKNANGE------KFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPL 55
           G+ SE DYPYK  +G+      + K   D   V++ + +       S     +L +  P+
Sbjct: 81  GIASEADYPYKARDGKCKANEIQDKVTIDNYGVQILSNESTESEAESSLQSFVLEQ--PI 138
Query: 56  SVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDE 115
           SV +++   H Y+G  I       SPY + H VL+VGYG +D + YW+ +NSWG     +
Sbjct: 139 SVSIDAKDFHFYSGG-IYDGGNCSSPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWGID 197
Query: 116 GFFKIER--GN--NACGKDFLH----FNGSETMK 141
           G+ +I+R  GN    CG ++         SET+K
Sbjct: 198 GYIRIQRNTGNLLGVCGMNYFASYPIIEKSETLK 231

>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The Catalytic Cysteine From Seeds Of Pachyrhizus Erosus Length = 246

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 149 PLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGP 208
           P+SV +++   HFY+G  I       SPY + H VL+VGYG +D + YW+ +NSWG    
Sbjct: 137 PISVSIDAKDFHFYSGG-IYDGGNCSSPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWG 195
Query: 209 DEGFFKIEH 217
            +G+ +I+ 
Sbjct: 196 IDGYIRIQR 204

>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor Bound To Cathepsin K Length = 215

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 5/129 (3%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
           G++SE  YPY    G+   C Y+ + K     G   +       +K+ +   GP+SV ++
Sbjct: 80  GIDSEDAYPYV---GQDESCMYNPTGKAAKCRGYREIPEGNEAALKRAVAAVGPVSVAID 136
Query: 61  SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
           + L      +     DE CS   L HAVL VGYG Q    +W+++NSWG    + G+  +
Sbjct: 137 ASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYGIQAGNKHWIIKNSWGESWGNAGYILM 196
Query: 121 ERG-NNACG 128
            R  NNACG
Sbjct: 197 ARNKNNACG 205

>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor Bound To Cathepsin K Length = 215

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 50/108 (46%), Gaps = 12/108 (11%)
Query: 106 NSWGPIGPDEGFFKIERGNNACGKDFLHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGT 165
           N  G      G+ +I  GN A             +K+ +   GP+SV +++ L  F   +
Sbjct: 99  NPTGKAAKCRGYREIPEGNEA------------ALKRAVAAVGPVSVAIDASLTSFQFYS 146
Query: 166 PIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFF 213
                DE CS   L HAVL VGYG Q    +W+++NSWG    + G+ 
Sbjct: 147 AGVYYDENCSSDALNHAVLAVGYGIQAGNKHWIIKNSWGESWGNAGYI 194

>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio Molitor Larval Midgut Length = 329

Iteration: 1
 Score = 64.3 bits (155), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 73/131 (55%), Gaps = 10/131 (7%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSK-VKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
           G+ SE  YPY+ A G+   C +D S+ V   +G   L      ++   + + GP++V ++
Sbjct: 195 GIMSESAYPYE-AQGDY--CRFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAID 251
Query: 61  S-DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
           + D +  Y+G      D+TC+  DL H VL+VGYG  +   YW+++NSWG    + G+++
Sbjct: 252 ATDELQFYSGGLFY--DQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGYWR 309
Query: 120 IER--GNNACG 128
             R  GNN CG
Sbjct: 310 QVRNYGNN-CG 319

>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio Molitor Larval Midgut Length = 329

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 139 TMKKILYKYGPLSVGLNS-HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYW 197
           ++   + + GP++V +++   + FY+G      D+TC+  DL H VL+VGYG  +   YW
Sbjct: 235 SLADAVGQAGPVAVAIDATDELQFYSGGLFY--DQTCNQSDLNHGVLVVGYGSDNGQDYW 292
Query: 198 LVRNSWGPIGPDEGFFK 214
           +++NSWG    + G+++
Sbjct: 293 ILKNSWGSGWGESGYWR 309

>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq Length = 215

Iteration: 1
 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 5   SEKDYPYKNANGEKFKCAYDKSKV-KLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDL 63
           +E  YPY +  G    C      V    TG   L  + ++ +   L   GP++V +++  
Sbjct: 85  TEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQ-IAAWLAVNGPVAVAVDASS 143
Query: 64  IHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG 123
              Y G  +     +C    L H VLLVGY     +PYW+++NSW     +EG+ +I +G
Sbjct: 144 WMTYTGGVMT----SCVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKG 199
Query: 124 NNAC 127
           +N C
Sbjct: 200 SNQC 203

>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq Length = 215

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 140 MKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLV 199
           +   L   GP++V +++     Y G  +     +C    L H VLLVGY     +PYW++
Sbjct: 125 IAAWLAVNGPVAVAVDASSWMTYTGGVMT----SCVSEQLDHGVLLVGYNDSAAVPYWII 180
Query: 200 RNSWGPIGPDEGFFKI 215
           +NSW     +EG+ +I
Sbjct: 181 KNSWTTQWGEEGYIRI 196

>pdb|1AIM|A Chain A, Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluoromethylketone Length = 215

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 5   SEKDYPYKNANGEKFKCAYDKSKV-KLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDL 63
           +E  YPY +  G    C      V    TG   L  + ++ +   L   GP++V +++  
Sbjct: 85  TEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQ-IAAWLAVNGPVAVAVDASS 143
Query: 64  IHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG 123
              Y G  +     +C    L H VLLVGY     +PYW+++NSW     +EG+ +I +G
Sbjct: 144 WMTYTGGVMT----SCVSEALDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKG 199
Query: 124 NNAC 127
           +N C
Sbjct: 200 SNQC 203

>pdb|1AIM|A Chain A, Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluoromethylketone Length = 215

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 140 MKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLV 199
           +   L   GP++V +++     Y G  +     +C    L H VLLVGY     +PYW++
Sbjct: 125 IAAWLAVNGPVAVAVDASSWMTYTGGVMT----SCVSEALDHGVLLVGYNDSAAVPYWII 180
Query: 200 RNSWGPIGPDEGFFKI 215
           +NSW     +EG+ +I
Sbjct: 181 KNSWTTQWGEEGYIRI 196

>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A Tetrafluorophenoxymethyl Ketone Inhibitor Length = 221

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 5   SEKDYPYKNANGEKFKCAYDKSKV-KLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDL 63
           +E  YPY +  G    C      V    TG   L  + ++ +   L   GP++V +++  
Sbjct: 85  TEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQ-IAAWLAVNGPVAVAVDASS 143
Query: 64  IHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG 123
              Y G  +     +C    L H VLLVGY     +PYW+++NSW     +EG+ +I +G
Sbjct: 144 WMTYTGGVMT----SCVSEQLDHGVLLVGYNDGAAVPYWIIKNSWTTQWGEEGYIRIAKG 199
Query: 124 NNAC 127
           +N C
Sbjct: 200 SNQC 203

>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A Tetrafluorophenoxymethyl Ketone Inhibitor Length = 221

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 140 MKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLV 199
           +   L   GP++V +++     Y G  +     +C    L H VLLVGY     +PYW++
Sbjct: 125 IAAWLAVNGPVAVAVDASSWMTYTGGVMT----SCVSEQLDHGVLLVGYNDGAAVPYWII 180
Query: 200 RNSWGPIGPDEGFFKI 215
           +NSW     +EG+ +I
Sbjct: 181 KNSWTTQWGEEGYIRI 196

>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The Vinyl Sulfone Inhibitor Smdc-256047 Length = 215

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 6/124 (4%)
Query: 5   SEKDYPYKNANGEKFKCAYDKSKV-KLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDL 63
           +E  YPY +  G    C      V    TG   L  + ++ +   L   GP++V +++  
Sbjct: 85  TEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQ-IAAWLAVNGPVAVAVDASS 143
Query: 64  IHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG 123
              Y G  +     +C    L H VLLVGY     +PYW+++NSW     +EG+ +I +G
Sbjct: 144 WMTYTGGVMT----SCVSEQLDHGVLLVGYNDGAAVPYWIIKNSWTTQWGEEGYIRIAKG 199
Query: 124 NNAC 127
           +N C
Sbjct: 200 SNQC 203

>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The Vinyl Sulfone Inhibitor Smdc-256047 Length = 215

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 140 MKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLV 199
           +   L   GP++V +++     Y G  +     +C    L H VLLVGY     +PYW++
Sbjct: 125 IAAWLAVNGPVAVAVDASSWMTYTGGVMT----SCVSEQLDHGVLLVGYNDGAAVPYWII 180
Query: 200 RNSWGPIGPDEGFFKI 215
           +NSW     +EG+ +I
Sbjct: 181 KNSWTTQWGEEGYIRI 196

>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric Cysteine Protease Of The Papain Family Length = 438

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 6/90 (6%)
Query: 45  MKKILYKYGPLSVL--LNSDLIHDYNGTPIRKN-DETCSPYDL-GHAVLLVGYGKQ--DD 98
           MK  L K+GP++V   ++ D +H ++G        +  +P++L  HAVLLVGYGK     
Sbjct: 335 MKLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGKDPVTG 394
Query: 99  IPYWLVRNSWGPIGPDEGFFKIERGNNACG 128
           + YW+V+NSWG    + G+F+I RG + C 
Sbjct: 395 LDYWIVKNSWGSQWGESGYFRIRRGTDECA 424

>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric Cysteine Protease Of The Papain Family Length = 438

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 81/187 (43%), Gaps = 23/187 (12%)
Query: 50  YKYGPLSVL-LNSDLIHDYNGTPIRKNDE--TCSPY----DLGHAVLLVGYGKQD----- 97
           Y +  L +L     ++ + + TPI    E  +CSPY    D G   L+ G   QD     
Sbjct: 234 YSFASLGMLEARIRILTNNSQTPILSPQEVVSCSPYAQGCDGGFPYLIAGKYAQDFGVVE 293
Query: 98  --DIPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFLHFNGSETMKKILYKYGPLSVGLN 155
               PY        P  P E   +           F        MK  L K+GP++V   
Sbjct: 294 ENCFPYTATD---APCKPKENCLRYYSSEYYYVGGFYGGCNEALMKLELVKHGPMAVAFE 350
Query: 156 SH--LIHFYNGTPIRKN-DETCSPYDL-GHAVLLVGYGKQ--DDIPYWLVRNSWGPIGPD 209
            H   +H+++G        +  +P++L  HAVLLVGYGK     + YW+V+NSWG    +
Sbjct: 351 VHDDFLHYHSGIYHHTGLSDPFNPFELTNHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGE 410
Query: 210 EGFFKIE 216
            G+F+I 
Sbjct: 411 SGYFRIR 417

>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex Length = 221

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 13/135 (9%)
Query: 2   GLESEKDYPYKNANGEKFKCAYD-KSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
           GL+SE+ YPY   +     C Y  ++ V   TG   +     + + K +   GP+SV ++
Sbjct: 82  GLDSEESYPYVAVDE---ICKYRPENSVAQDTGFTVVAPGKEKALMKAVATVGPISVAMD 138
Query: 61  S--DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGPD 114
           +       Y      + D  CS  +L H VL+VGYG      D+  YWLV+NSWGP    
Sbjct: 139 AGHSSFQFYKSGIYFEPD--CSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGS 196
Query: 115 EGFFKIER-GNNACG 128
            G+ KI +  NN CG
Sbjct: 197 NGYVKIAKDKNNHCG 211

>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex Length = 221

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 138 ETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQ 191
           + + K +   GP+SV +++      FY      + D  CS  +L H VL+VGYG      
Sbjct: 121 KALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPD--CSSKNLDHGVLVVGYGFEGANS 178
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
           D+  YWLV+NSWGP     G+ KI     +H 
Sbjct: 179 DNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHC 210

>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An Irreversible Vinyl Sulfone Inhibitor Length = 221

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 13/135 (9%)
Query: 2   GLESEKDYPYKNANGEKFKCAYD-KSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
           GL+SE+ YPY   +     C Y  ++ V   TG   +     + + K +   GP+SV ++
Sbjct: 82  GLDSEESYPYVAVDE---ICKYRPENSVAQDTGFTVVAPGKEKALMKAVATVGPISVAMD 138
Query: 61  S--DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGPD 114
           +       Y      + D  CS  +L H VL+VGYG      D+  YWLV+NSWGP    
Sbjct: 139 AGHSSFQFYKSGIYFEPD--CSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGS 196
Query: 115 EGFFKIER-GNNACG 128
            G+ KI +  NN CG
Sbjct: 197 NGYVKIAKDKNNHCG 211

>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An Irreversible Vinyl Sulfone Inhibitor Length = 221

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
Query: 138 ETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQ 191
           + + K +   GP+SV +++      FY      + D  CS  +L H VL+VGYG      
Sbjct: 121 KALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPD--CSSKNLDHGVLVVGYGFEGANS 178
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
           D+  YWLV+NSWGP     G+ KI     +H 
Sbjct: 179 DNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHC 210

>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S Length = 217

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
           G++S+  YPYK  +    KC YD SK +  T   +  L +   + +K+ +   GP+SV +
Sbjct: 83  GIDSDASYPYKAMD---LKCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 138
Query: 60  NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
           ++     +        + +C+  ++ H VL+VGYG  +   YWLV+NSWG    +EG+ +
Sbjct: 139 DARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIR 197
Query: 120 IERGN-NACG 128
           + R   N CG
Sbjct: 198 MARNKGNHCG 207

>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S Length = 217

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 132 LHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 191
           L +   + +K+ +   GP+SVG+++    F+        + +C+  ++ H VL+VGYG  
Sbjct: 116 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDL 174
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
           +   YWLV+NSWG    +EG+ ++     +H 
Sbjct: 175 NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHC 206

>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human Procathepsin S Length = 315

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
           G++S+  YPYK  +    KC YD SK +  T   +  L +   + +K+ +   GP+SV +
Sbjct: 181 GIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 236
Query: 60  NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
           ++     +        + +C+  ++ H VL+VGYG  +   YWLV+NSWG    +EG+ +
Sbjct: 237 DARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIR 295
Query: 120 IERGN-NACG 128
           + R   N CG
Sbjct: 296 MARNKGNHCG 305

>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human Procathepsin S Length = 315

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 132 LHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 191
           L +   + +K+ +   GP+SVG+++    F+        + +C+  ++ H VL+VGYG  
Sbjct: 214 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDL 272
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSH 222
           +   YWLV+NSWG    +EG+ ++     +H
Sbjct: 273 NGKEYWLVKNSWGHNFGEEGYIRMARNKGNH 303

>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S. Length = 222

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
           G++S+  YPYK  +    KC YD SK +  T   +  L +   + +K+ +   GP+SV +
Sbjct: 83  GIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 138
Query: 60  NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
           ++     +        + +C+  ++ H VL+VGYG  +   YWLV+NSWG    +EG+ +
Sbjct: 139 DARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIR 197
Query: 120 IERGN-NACG 128
           + R   N CG
Sbjct: 198 MARNKGNHCG 207

>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S. Length = 222

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 132 LHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 191
           L +   + +K+ +   GP+SVG+++    F+        + +C+  ++ H VL+VGYG  
Sbjct: 116 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDL 174
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
           +   YWLV+NSWG    +EG+ ++     +H 
Sbjct: 175 NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHC 206

>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3 Inhibitor Length = 219

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
           G++S+  YPYK  +    KC YD SK +  T   +  L +   + +K+ +   GP+SV +
Sbjct: 83  GIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 138
Query: 60  NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
           ++     +        + +C+  ++ H VL+VGYG  +   YWLV+NSWG    +EG+ +
Sbjct: 139 DARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIR 197
Query: 120 IERGN-NACG 128
           + R   N CG
Sbjct: 198 MARNKGNHCG 207

>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3 Inhibitor Length = 219

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 132 LHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 191
           L +   + +K+ +   GP+SVG+++    F+        + +C+  ++ H VL+VGYG  
Sbjct: 116 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDL 174
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
           +   YWLV+NSWG    +EG+ ++     +H 
Sbjct: 175 NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHC 206

>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As P1 Binding Elements Length = 222

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
           G++S+  YPYK  +    KC YD SK +  T   +  L +   + +K+ +   GP+SV +
Sbjct: 85  GIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 140
Query: 60  NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
           ++     +        + +C+  ++ H VL+VGYG  +   YWLV+NSWG    +EG+ +
Sbjct: 141 DARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIR 199
Query: 120 IERGN-NACG 128
           + R   N CG
Sbjct: 200 MARNKGNHCG 209

>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As P1 Binding Elements Length = 222

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 132 LHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 191
           L +   + +K+ +   GP+SVG+++    F+        + +C+  ++ H VL+VGYG  
Sbjct: 118 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDL 176
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
           +   YWLV+NSWG    +EG+ ++     +H 
Sbjct: 177 NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHC 208

>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With Bound Drug Length = 220

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
           G++S+  YPYK  +    KC YD SK +  T   +  L +   + +K+ +   GP+SV +
Sbjct: 84  GIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 139
Query: 60  NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
           ++     +        + +C+  ++ H VL+VGYG  +   YWLV+NSWG    +EG+ +
Sbjct: 140 DARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIR 198
Query: 120 IERGN-NACG 128
           + R   N CG
Sbjct: 199 MARNKGNHCG 208

>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With Bound Drug Length = 220

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 132 LHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 191
           L +   + +K+ +   GP+SVG+++    F+        + +C+  ++ H VL+VGYG  
Sbjct: 117 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDL 175
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
           +   YWLV+NSWG    +EG+ ++     +H 
Sbjct: 176 NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHC 207

>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent 2-(Benzoxazol-2-Ylamino)- Acetamide Length = 220

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
           G++S+  YPYK  +    KC YD SK +  T   +  L +   + +K+ +   GP+SV +
Sbjct: 86  GIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 141
Query: 60  NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
           ++     +        + +C+  ++ H VL+VGYG  +   YWLV+NSWG    +EG+ +
Sbjct: 142 DARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIR 200
Query: 120 IERGN-NACG 128
           + R   N CG
Sbjct: 201 MARNKGNHCG 210

>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent 2-(Benzoxazol-2-Ylamino)- Acetamide Length = 220

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 132 LHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 191
           L +   + +K+ +   GP+SVG+++    F+        + +C+  ++ H VL+VGYG  
Sbjct: 119 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDL 177
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
           +   YWLV+NSWG    +EG+ ++     +H 
Sbjct: 178 NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHC 209

>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes Length = 217

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
           G++S+  YPYK  +    KC YD SK +  T   +  L +   + +K+ +   GP+SV +
Sbjct: 83  GIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 138
Query: 60  NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
           ++     +        + +C+  ++ H VL+VGYG  +   YWLV+NSWG    +EG+ +
Sbjct: 139 DARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIR 197
Query: 120 IERGN-NACG 128
           + R   N CG
Sbjct: 198 MARNKGNHCG 207

>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes Length = 217

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 132 LHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 191
           L +   + +K+ +   GP+SVG+++    F+        + +C+  ++ H VL+VGYG  
Sbjct: 116 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDL 174
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
           +   YWLV+NSWG    +EG+ ++     +H 
Sbjct: 175 NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHC 206

>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor Length = 225

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
           G++S+  YPYK  +    KC YD SK +  T   +  L +   + +K+ +   GP+SV +
Sbjct: 84  GIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 139
Query: 60  NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
           ++     +        + +C+  ++ H VL+VGYG  +   YWLV+NSWG    +EG+ +
Sbjct: 140 DARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIR 198
Query: 120 IERGN-NACG 128
           + R   N CG
Sbjct: 199 MARNKGNHCG 208

>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor Length = 225

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 132 LHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 191
           L +   + +K+ +   GP+SVG+++    F+        + +C+  ++ H VL+VGYG  
Sbjct: 117 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDL 175
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
           +   YWLV+NSWG    +EG+ ++     +H 
Sbjct: 176 NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHC 207

>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As Cathepsin S Inhibitors: N3, Not N1 Is Critically Important Length = 217

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
           G++S+  YPYK  +    KC YD SK +  T   +  L +   + +K+ +   GP+SV +
Sbjct: 83  GIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 138
Query: 60  NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
           ++     +        + +C+  ++ H VL+VGYG  +   YWLV+NSWG    +EG+ +
Sbjct: 139 DARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIR 197
Query: 120 IERGN-NACG 128
           + R   N CG
Sbjct: 198 MARNKGNHCG 207

>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As Cathepsin S Inhibitors: N3, Not N1 Is Critically Important Length = 217

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 132 LHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 191
           L +   + +K+ +   GP+SVG+++    F+        + +C+  ++ H VL+VGYG  
Sbjct: 116 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDL 174
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
           +   YWLV+NSWG    +EG+ ++     +H 
Sbjct: 175 NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHC 206

>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An Aldehyde Warhead Length = 218

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
           G++S+  YPYK  +    KC YD SK +  T   +  L +   + +K+ +   GP+SV +
Sbjct: 84  GIDSDASYPYKAMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGV 139
Query: 60  NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
           ++     +        + +C+  ++ H VL+VGYG  +   YWLV+NSWG    +EG+ +
Sbjct: 140 DARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIR 198
Query: 120 IERGN-NACG 128
           + R   N CG
Sbjct: 199 MARNKGNHCG 208

>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An Aldehyde Warhead Length = 218

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 132 LHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 191
           L +   + +K+ +   GP+SVG+++    F+        + +C+  ++ H VL+VGYG  
Sbjct: 117 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDL 175
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
           +   YWLV+NSWG    +EG+ ++     +H 
Sbjct: 176 NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHC 207

>pdb|1MIR|A Chain A, Rat Procathepsin B Length = 322

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 9/98 (9%)
Query: 36  FLHFNGSETMKKIL---YKYGPL--SVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLL 90
           +  ++ S++ K+I+   YK GP+  +  + SD +   +G    +  +       GHA+ +
Sbjct: 210 YTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMG----GHAIRI 265
Query: 91  VGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACG 128
           +G+G ++ +PYWLV NSW     D GFFKI RG N CG
Sbjct: 266 LGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHCG 303

>pdb|1MIR|A Chain A, Rat Procathepsin B Length = 322

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 180 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 215
           GHA+ ++G+G ++ +PYWLV NSW     D GFFKI
Sbjct: 260 GHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKI 295

>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 260

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 9/98 (9%)
Query: 36  FLHFNGSETMKKIL---YKYGPL--SVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLL 90
           +  ++ S++ K+I+   YK GP+  +  + SD +   +G    +  +       GHA+ +
Sbjct: 154 YTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMG----GHAIRI 209
Query: 91  VGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACG 128
           +G+G ++ +PYWLV NSW     D GFFKI RG N CG
Sbjct: 210 LGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHCG 247

>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 260

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 180 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 215
           GHA+ ++G+G ++ +PYWLV NSW     D GFFKI
Sbjct: 204 GHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKI 239

>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 254

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 9/98 (9%)
Query: 36  FLHFNGSETMKKIL---YKYGPL--SVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLL 90
           +  ++ S++ K+I+   YK GP+  +  + SD +   +G    +  +       GHA+ +
Sbjct: 148 YTSYSVSDSEKEIMAEIYKNGPVEGAFTVFSDFLTYKSGVYKHEAGDVMG----GHAIRI 203
Query: 91  VGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACG 128
           +G+G ++ +PYWLV NSW     D GFFKI RG N CG
Sbjct: 204 LGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHCG 241

>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 254

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 26/36 (72%)
Query: 180 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 215
           GHA+ ++G+G ++ +PYWLV NSW     D GFFKI
Sbjct: 198 GHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKI 233

>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra- 14009 Length = 217

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 70/130 (53%), Gaps = 8/130 (6%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
           G++S+  YPYK  +    KC YD SK +  T + +  L +   + +K+ +   GP+SV +
Sbjct: 83  GIDSDASYPYKAMDQ---KCQYD-SKYRAATCRKYTELPYGREDVLKEAVANKGPVSVGV 138
Query: 60  NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
           ++     +        + +C+  ++ H VL+VGYG  +   YWLV+NSWG    ++G+ +
Sbjct: 139 DARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGYIR 197
Query: 120 IERGN-NACG 128
           + R   N CG
Sbjct: 198 MARNKGNHCG 207

>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra- 14009 Length = 217

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 132 LHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 191
           L +   + +K+ +   GP+SVG+++    F+        + +C+  ++ H VL+VGYG  
Sbjct: 116 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDL 174
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
           +   YWLV+NSWG    ++G+ ++     +H 
Sbjct: 175 NGKEYWLVKNSWGHNFGEKGYIRMARNKGNHC 206

>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin At 1.7 Angstroms Resolution By Fast Fourier Least-Squares Methods Length = 220

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 11/132 (8%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
           G+ +E++YPY   +G+      D+  V + T ++  + N  E   +    Y P+SV L++
Sbjct: 82  GINTEENYPYTAQDGDCDVALQDQKYVTIDTYENVPYNN--EWALQTAVTYQPVSVALDA 139
Query: 62  --DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
             D    Y          T     + HA+++VGYG +  + YW+V+NSW     +EG+ +
Sbjct: 140 AGDAFKQYASGIFTGPCGTA----VDHAIVIVGYGTEGGVDYWIVKNSWDTTWGEEGYMR 195
Query: 120 IER---GNNACG 128
           I R   G   CG
Sbjct: 196 ILRNVGGAGTCG 207

>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin At 1.7 Angstroms Resolution By Fast Fourier Least-Squares Methods Length = 220

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 181 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHLTHDIPGVPTH 233
           HA+++VGYG +  + YW+V+NSW     +EG+ +I   +    T  I  +P++
Sbjct: 162 HAIVIVGYGTEGGVDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSY 214

>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+ Length = 218

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 15/134 (11%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
           G+ +E++YPY   +GE   C  D    K  T   +  + +N    ++  +  Y P+SV L
Sbjct: 82  GINTEENYPYTAQDGE---CNVDLQNEKYVTIDTYENVPYNNEWALQTAV-TYQPVSVAL 137
Query: 60  NS--DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF 117
           ++  D    Y+         T     + HAV +VGYG +  I YW+V+NSW     +EG+
Sbjct: 138 DAAGDAFKQYSSGIFTGPCGTA----IDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGY 193
Query: 118 FKIER---GNNACG 128
            +I R   G   CG
Sbjct: 194 MRILRNVGGAGTCG 207

>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+ Length = 218

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 181 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHLTHDIPGVPTH 233
           HAV +VGYG +  I YW+V+NSW     +EG+ +I   +    T  I  +P++
Sbjct: 162 HAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMPSY 214

>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 15/134 (11%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
           G+ +E +YPY     E+ +C  D  + K  +   +  + +N    ++  +  Y P+SV L
Sbjct: 82  GINTEANYPY---TAEEGQCNLDLQQEKYVSIDTYENVPYNNEWALQTAV-AYQPVSVAL 137
Query: 60  NSDLIHDYNGTPIRKNDET--CSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF 117
            +     YN         T  C    + HAV +VGYG +  I YW+V+NSWG    +EG+
Sbjct: 138 EA---AGYNFQHYSSGIFTGPCGT-AVDHAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGY 193
Query: 118 FKIER---GNNACG 128
            +I+R   G   CG
Sbjct: 194 MRIQRNVGGVGQCG 207

>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 137 SETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPY 196
           +E   +    Y P+SV L +   +F + +         +  D  HAV +VGYG +  I Y
Sbjct: 120 NEWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVD--HAVTIVGYGTEGGIDY 177
Query: 197 WLVRNSWGPIGPDEGFFKIEHTL 219
           W+V+NSWG    +EG+ +I+  +
Sbjct: 178 WIVKNSWGTTWGEEGYMRIQRNV 200

>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 65/134 (48%), Gaps = 15/134 (11%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
           G+ +E +YPY     E+ +C  D  + K  +   +  + +N    ++  +  Y P+SV L
Sbjct: 82  GINTEANYPY---TAEEGQCNLDLQQEKYVSIDTYENVPYNNEWALQTAV-AYQPVSVAL 137
Query: 60  NSDLIHDYNGTPIRKNDET--CSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF 117
            +     YN         T  C    + HAV +VGYG +  I YW+V+NSWG    +EG+
Sbjct: 138 EA---AGYNFQHYSSGIFTGPCGT-AVDHAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGY 193
Query: 118 FKIER---GNNACG 128
            +I+R   G   CG
Sbjct: 194 MRIQRNVGGVGQCG 207

>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 137 SETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPY 196
           +E   +    Y P+SV L +   +F + +         +  D  HAV +VGYG +  I Y
Sbjct: 120 NEWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTGPCGTAVD--HAVTIVGYGTEGGIDY 177
Query: 197 WLVRNSWGPIGPDEGFFKIEHTL 219
           W+V+NSWG    +EG+ +I+  +
Sbjct: 178 WIVKNSWGTTWGEEGYMRIQRNV 200

>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra- 14013 Length = 217

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
           G++S+  YPYK  +    KC YD S  +  T + +  L +   + +K+ +   GP+SV +
Sbjct: 83  GIDSDASYPYKAMDQ---KCQYD-SAYRAATCRKYTELPYGREDVLKEAVANKGPVSVGV 138
Query: 60  NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
           ++     +        + +C+  ++ H VL+VGYG  +   YWLV+NSWG    ++G+ +
Sbjct: 139 DARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGYIR 197
Query: 120 IERGN-NACG 128
           + R   N CG
Sbjct: 198 MARNKGNHCG 207

>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra- 14013 Length = 217

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Query: 132 LHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 191
           L +   + +K+ +   GP+SVG+++    F+        + +C+  ++ H VL+VGYG  
Sbjct: 116 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDL 174
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
           +   YWLV+NSWG    ++G+ ++     +H 
Sbjct: 175 NGKEYWLVKNSWGHNFGEKGYIRMARNKGNHC 206

>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin C Length = 441

Iteration: 1
 Score = 54.3 bits (129), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 24/144 (16%)
Query: 1   MGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNG-------SETMKKILYKYG 53
            GL  E  +PY    G    C   +   + ++ +   H+ G          MK  L  +G
Sbjct: 290 FGLVEEACFPY---TGTDSPCKMKEDCFRYYSSE--YHYVGGFYGGCNEALMKLELVHHG 344
Query: 54  PLSVLLN--SDLIH----DYNGTPIRKNDETCSPYDL-GHAVLLVGYG--KQDDIPYWLV 104
           P++V      D +H     Y+ T +R   +  +P++L  HAVLLVGYG      + YW+V
Sbjct: 345 PMAVAFEVYDDFLHYKKGIYHHTGLR---DPFNPFELTNHAVLLVGYGTDSASGMDYWIV 401
Query: 105 RNSWGPIGPDEGFFKIERGNNACG 128
           +NSWG    + G+F+I RG + C 
Sbjct: 402 KNSWGTGWGENGYFRIRRGTDECA 425

>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin C Length = 441

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 12/87 (13%)
Query: 140 MKKILYKYGPLSVGLNSH--LIHF----YNGTPIRKNDETCSPYDL-GHAVLLVGYG--K 190
           MK  L  +GP++V    +   +H+    Y+ T +R   +  +P++L  HAVLLVGYG   
Sbjct: 336 MKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLR---DPFNPFELTNHAVLLVGYGTDS 392
Query: 191 QDDIPYWLVRNSWGPIGPDEGFFKIEH 217
              + YW+V+NSWG    + G+F+I  
Sbjct: 393 ASGMDYWIVKNSWGTGWGENGYFRIRR 419

>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074 Complex Length = 253

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 29  KLFTGKDFLHFNGSETMKKILYKYGPLSVLLN--SDLIHDYNGTPIRKNDETCSPYDLGH 86
           K F    +   N  + +   +YK GP+    +  SD +   +G     + E       GH
Sbjct: 144 KHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMG----GH 199
Query: 87  AVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACG 128
           A+ ++G+G ++  PYWLV NSW     D GFFKI RG + CG
Sbjct: 200 AIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCG 241

>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074 Complex Length = 253

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 126 ACGKDFLHFNGSETMKKILYKYGPL--SVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAV 183
            C    +  N  E M +I YK GP+  +  + S  + + +G     + E       GHA+
Sbjct: 147 GCSSYSVANNEKEIMAEI-YKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMG----GHAI 201
Query: 184 LLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 215
            ++G+G ++  PYWLV NSW     D GFFKI
Sbjct: 202 RILGWGVENGTPYWLVANSWNTDWGDNGFFKI 233

>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At 3.2 Angstrom Resolution Length = 317

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 85  GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACG 128
           GHA+ ++G+G ++  PYWLV NSW     D GFFKI RG + CG
Sbjct: 261 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCG 304

>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At 3.2 Angstrom Resolution Length = 317

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 180 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 215
           GHA+ ++G+G ++  PYWLV NSW     D GFFKI
Sbjct: 261 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKI 296

>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor Extends Along The Whole Active Site Cleft Length = 205

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 29  KLFTGKDFLHFNGSETMKKILYKYGPLSVLLN--SDLIHDYNGTPIRKNDETCSPYDLGH 86
           K F    +   N  + +   +YK GP+    +  SD +   +G     + E       GH
Sbjct: 96  KHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMG----GH 151
Query: 87  AVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACG 128
           A+ ++G+G ++  PYWLV NSW     D GFFKI RG + CG
Sbjct: 152 AIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCG 193

>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor Extends Along The Whole Active Site Cleft Length = 205

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 126 ACGKDFLHFNGSETMKKILYKYGPL--SVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAV 183
            C    +  N  E M +I YK GP+  +  + S  + + +G     + E       GHA+
Sbjct: 99  GCSSYSVANNEKEIMAEI-YKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMG----GHAI 153
Query: 184 LLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 215
            ++G+G ++  PYWLV NSW     D GFFKI
Sbjct: 154 RILGWGVENGTPYWLVGNSWNTDWGDNGFFKI 185

>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex Length = 266

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 85  GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACG 128
           GHA+ ++G+G ++  PYWLV NSW     D GFFKI RG + CG
Sbjct: 204 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCG 247

>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex Length = 266

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 180 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 215
           GHA+ ++G+G ++  PYWLV NSW     D GFFKI
Sbjct: 204 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKI 239

>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A Length = 220

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLN 60
           GL+SE+ YPY+     +  C Y+  K  +     F+     E  + K +   GP+SV ++
Sbjct: 82  GLDSEESYPYE---ATEESCKYNP-KYSVANDAGFVDIPKQEKALMKAVATVGPISVAID 137
Query: 61  S---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGP 113
           +     +    G     +   CS  D+ H VL+VGYG    + DD  YWLV+NSWG    
Sbjct: 138 AGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFESTESDDNKYWLVKNSWGEEWG 194
Query: 114 DEGFFKIERG-NNACG 128
             G+ K+ +   N CG
Sbjct: 195 MGGYVKMAKDRRNHCG 210

>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A Length = 220

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 138 ETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQ 191
           + + K +   GP+SV +++      FY      + D  CS  D+ H VL+VGYG    + 
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--CSSEDMDHGVLVVGYGFESTES 177
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
           DD  YWLV+NSWG      G+ K+    R+H 
Sbjct: 178 DDNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 209

>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B- E64c Complex Length = 256

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 29  KLFTGKDFLHFNGSETMKKILYKYGPLSVLLN--SDLIHDYNGTPIRKNDETCSPYDLGH 86
           K F    +   N  + +   +YK GP+    +  SD +   +G     + E       GH
Sbjct: 144 KHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMG----GH 199
Query: 87  AVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACG 128
           A+ ++G+G ++  PYWLV NSW     D GFFKI RG + CG
Sbjct: 200 AIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCG 241

>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B- E64c Complex Length = 256

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 126 ACGKDFLHFNGSETMKKILYKYGPL--SVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAV 183
            C    +  N  E M +I YK GP+  +  + S  + + +G     + E       GHA+
Sbjct: 147 GCSSYSVANNEKEIMAEI-YKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMG----GHAI 201
Query: 184 LLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 215
            ++G+G ++  PYWLV NSW     D GFFKI
Sbjct: 202 RILGWGVENGTPYWLVGNSWNTDWGDNGFFKI 233

>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline Length = 256

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 85  GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACG 128
           GHA+ ++G+G ++  PYWLV NSW     D GFFKI RG + CG
Sbjct: 200 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCG 243

>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline Length = 256

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 180 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 215
           GHA+ ++G+G ++  PYWLV NSW     D GFFKI
Sbjct: 200 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKI 235

>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor Length = 261

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 85  GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACG 128
           GHA+ ++G+G ++  PYWLV NSW     D GFFKI RG + CG
Sbjct: 199 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCG 242

>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor Length = 261

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 180 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 215
           GHA+ ++G+G ++  PYWLV NSW     D GFFKI
Sbjct: 199 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKI 234

>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In Complex With Ca074 Inhibitor Length = 254

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 12  KNANGEKFKCAYDKSKVKLFTGKDFLHF-NGSETMKKILYKYGPLSV--LLNSDLIHDYN 68
           K    +K+K  Y + K +   GK   +  N  + ++K + KYGP+     +  D ++  +
Sbjct: 131 KQTCQKKYKTPYTQDKHR---GKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYEDFLNYKS 187
Query: 69  GTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNAC 127
           G       ET      GHA+ ++G+G ++  PYWL+ NSW     + G+F+I RG + C
Sbjct: 188 GIYKHITGETLG----GHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRIVRGRDEC 242

>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In Complex With Ca074 Inhibitor Length = 254

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 28/97 (28%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
Query: 135 NGSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 192
           N  + ++K + KYGP+  G   +   +++ +G       ET      GHA+ ++G+G ++
Sbjct: 157 NDEKAIQKEIMKYGPVEAGFTVYEDFLNYKSGIYKHITGETLG----GHAIRIIGWGVEN 212
Query: 193 DIPYWLVRNSWGPIGPDEGFFKI-----EHTLRSHLT 224
             PYWL+ NSW     + G+F+I     E ++ S +T
Sbjct: 213 KAPYWLIANSWNEDWGENGYFRIVRGRDECSIESEVT 249

>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A Length = 254

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 85  GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACG 128
           GHA+ ++G+G ++  PYWLV NSW     D GFFKI RG + CG
Sbjct: 198 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCG 241

>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A Length = 254

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 180 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 215
           GHA+ ++G+G ++  PYWLV NSW     D GFFKI
Sbjct: 198 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKI 233

>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of Human Liver Cathepsin B: The Structural Basis For Its Specificity Length = 205

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 85  GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACG 128
           GHA+ ++G+G ++  PYWLV NSW     D GFFKI RG + CG
Sbjct: 149 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCG 192

>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of Human Liver Cathepsin B: The Structural Basis For Its Specificity Length = 205

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 180 GHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 215
           GHA+ ++G+G ++  PYWLV NSW     D GFFKI
Sbjct: 149 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKI 184

>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L Length = 316

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLN 60
           GL+SE+ YPY+     +  C Y+  K  +     F+     E  + K +   GP+SV ++
Sbjct: 178 GLDSEESYPYE---ATEESCKYN-PKYSVANDAGFVDIPKQEKALMKAVATVGPISVAID 233
Query: 61  S---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGP 113
           +     +    G     +   CS  D+ H VL+VGYG    + D+  YWLV+NSWG    
Sbjct: 234 AGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWG 290
Query: 114 DEGFFKIERG-NNACG 128
             G+ K+ +   N CG
Sbjct: 291 MGGYVKMAKDRRNHCG 306

>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L Length = 316

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Query: 138 ETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQ 191
           + + K +   GP+SV +++      FY      + D  CS  D+ H VL+VGYG    + 
Sbjct: 216 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--CSSEDMDHGVLVVGYGFESTES 273
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSH 222
           D+  YWLV+NSWG      G+ K+    R+H
Sbjct: 274 DNNKYWLVKNSWGEEWGMGGYVKMAKDRRNH 304

>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease Ervatamin-A Complexed With Irreversible Inhibitor E-64 Length = 209

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 13/135 (9%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
           G+++E +YPYK   G    C   K  V++   K     N +     +  +   +++  +S
Sbjct: 80  GIDTEANYPYKAFQGP---CRAAKKVVRIDGCKGVPQCNENALKNAVASQPSVVAIDASS 136
Query: 62  DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIE 121
                Y G        T     L H V++VGYGK     YW+VRNSWG    ++G+ +++
Sbjct: 137 KQFQHYKGGIFTGPCGT----KLNHGVVIVGYGKD----YWIVRNSWGRHWGEQGYTRMK 188
Query: 122 R--GNNACGKDFLHF 134
           R  G   CG   L F
Sbjct: 189 RVGGCGLCGIARLPF 203

>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine Protease With The Proregion Covalently Linked To The Active Site Cysteine Length = 277

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 4/104 (3%)
Query: 18  KFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSV-LLNSDLIHDYNGTPIRKND 76
           +FK  +      L+   D+   +G E M   +Y  GP+S  ++ ++ + +Y G    +  
Sbjct: 149 EFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQ 208
Query: 77  ETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
           +T     + H V + G+G  D   YW+VRNSWG    + G+ +I
Sbjct: 209 DTTY---INHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRI 249

>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine Protease With The Proregion Covalently Linked To The Active Site Cysteine Length = 277

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 130 DFLHFNGSETMKKILYKYGPLSVGL--NSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVG 187
           D+   +G E M   +Y  GP+S G+     L ++  G      D T     + H V + G
Sbjct: 166 DYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTT----YINHVVSVAG 221
Query: 188 YGKQDDIPYWLVRNSWGPIGPDEGFFKI 215
           +G  D   YW+VRNSWG    + G+ +I
Sbjct: 222 WGISDGTEYWIVRNSWGEPWGERGWLRI 249

>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X Length = 242

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 130 DFLHFNGSETMKKILYKYGPLSVGL--NSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVG 187
           D+   +G E M   +Y  GP+S G+     L ++  G      D T     + H V + G
Sbjct: 131 DYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTT----YINHVVSVAG 186
Query: 188 YGKQDDIPYWLVRNSWGPIGPDEGFFKI 215
           +G  D   YW+VRNSWG    + G+ +I
Sbjct: 187 WGISDGTEYWIVRNSWGEPWGERGWLRI 214

>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant Length = 220

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLN 60
           GL+SE+ YPY+     +  C Y+  K  +     F+     E  + K +   GP+SV ++
Sbjct: 82  GLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAID 137
Query: 61  S---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGP 113
           +     +    G     +   CS  D+ H VL+VGYG    + D+  YWLV+NSWG    
Sbjct: 138 AGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWG 194
Query: 114 DEGFFKIERG-NNACG 128
             G+ K+ +   N CG
Sbjct: 195 MGGYVKMAKDRRNHCG 210

>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant Length = 220

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 138 ETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQ 191
           + + K +   GP+SV +++      FY      + D  CS  D+ H VL+VGYG    + 
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--CSSEDMDHGVLVVGYGFESTES 177
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
           D+  YWLV+NSWG      G+ K+    R+H 
Sbjct: 178 DNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 209

>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin L Length = 220

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLN 60
           GL+SE+ YPY+     +  C Y+  K  +     F+     E  + K +   GP+SV ++
Sbjct: 82  GLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAID 137
Query: 61  S---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGP 113
           +     +    G     +   CS  D+ H VL+VGYG    + D+  YWLV+NSWG    
Sbjct: 138 AGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWG 194
Query: 114 DEGFFKIERG-NNACG 128
             G+ K+ +   N CG
Sbjct: 195 MGGYVKMAKDRRNHCG 210

>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin L Length = 220

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 138 ETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQ 191
           + + K +   GP+SV +++      FY      + D  CS  D+ H VL+VGYG    + 
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--CSSEDMDHGVLVVGYGFESTES 177
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
           D+  YWLV+NSWG      G+ K+    R+H 
Sbjct: 178 DNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 209

>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor, Chagasin, In Complex With Human Cathepsin L Length = 221

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLN 60
           GL+SE+ YPY+     +  C Y+  K  +     F+     E  + K +   GP+SV ++
Sbjct: 83  GLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAID 138
Query: 61  S---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGP 113
           +     +    G     +   CS  D+ H VL+VGYG    + D+  YWLV+NSWG    
Sbjct: 139 AGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWG 195
Query: 114 DEGFFKIERG-NNACG 128
             G+ K+ +   N CG
Sbjct: 196 MGGYVKMAKDRRNHCG 211

>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor, Chagasin, In Complex With Human Cathepsin L Length = 221

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 138 ETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQ 191
           + + K +   GP+SV +++      FY      + D  CS  D+ H VL+VGYG    + 
Sbjct: 121 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--CSSEDMDHGVLVVGYGFESTES 178
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
           D+  YWLV+NSWG      G+ K+    R+H 
Sbjct: 179 DNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 210

>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible Inhibition Of Human Cathepsin L By Their Respective Dipeptidyl Glyoxal And Diazomethylketone Inhibitors Length = 221

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLN 60
           GL+SE+ YPY+     +  C Y+  K  +     F+     E  + K +   GP+SV ++
Sbjct: 83  GLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAID 138
Query: 61  S---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGP 113
           +     +    G     +   CS  D+ H VL+VGYG    + D+  YWLV+NSWG    
Sbjct: 139 AGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWG 195
Query: 114 DEGFFKIERG-NNACG 128
             G+ K+ +   N CG
Sbjct: 196 MGGYVKMAKDRRNHCG 211

>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible Inhibition Of Human Cathepsin L By Their Respective Dipeptidyl Glyoxal And Diazomethylketone Inhibitors Length = 221

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 138 ETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQ 191
           + + K +   GP+SV +++      FY      + D  CS  D+ H VL+VGYG    + 
Sbjct: 121 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--CSSEDMDHGVLVVGYGFESTES 178
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
           D+  YWLV+NSWG      G+ K+    R+H 
Sbjct: 179 DNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 210

>pdb|3HWN|A Chain A, Cathepsin L With Az13010160 Length = 258

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLN 60
           GL+SE+ YPY+     +  C Y+  K  +     F+     E  + K +   GP+SV ++
Sbjct: 120 GLDSEESYPYE---ATEESCKYN-PKYSVANDAGFVDIPKQEKALMKAVATVGPISVAID 175
Query: 61  S---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGP 113
           +     +    G     +   CS  D+ H VL+VGYG    + D+  YWLV+NSWG    
Sbjct: 176 AGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWG 232
Query: 114 DEGFFKIERG-NNACG 128
             G+ K+ +   N CG
Sbjct: 233 MGGYVKMAKDRRNHCG 248

>pdb|3HWN|A Chain A, Cathepsin L With Az13010160 Length = 258

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 138 ETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQ 191
           + + K +   GP+SV +++      FY      + D  CS  D+ H VL+VGYG    + 
Sbjct: 158 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--CSSEDMDHGVLVVGYGFESTES 215
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
           D+  YWLV+NSWG      G+ K+    R+H 
Sbjct: 216 DNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 247

>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With Az12878478 Length = 220

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLN 60
           GL+SE+ YPY+     +  C Y+  K  +     F+     E  + K +   GP+SV ++
Sbjct: 82  GLDSEESYPYE---ATEESCKYNP-KYSVANDAGFVDIPKQEKALMKAVATVGPISVAID 137
Query: 61  S---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGP 113
           +     +    G     +   CS  D+ H VL+VGYG    + D+  YWLV+NSWG    
Sbjct: 138 AGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWG 194
Query: 114 DEGFFKIERG-NNACG 128
             G+ K+ +   N CG
Sbjct: 195 MGGYVKMAKDRRNHCG 210

>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With Az12878478 Length = 220

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 138 ETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQ 191
           + + K +   GP+SV +++      FY      + D  CS  D+ H VL+VGYG    + 
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--CSSEDMDHGVLVVGYGFESTES 177
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
           D+  YWLV+NSWG      G+ K+    R+H 
Sbjct: 178 DNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 209

>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study Of Cathepsin-L Retro-Binding Inhibitors(Compound 4) Length = 220

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLN 60
           GL+SE+ YPY+     +  C Y+  K  +     F+     E  + K +   GP+SV ++
Sbjct: 82  GLDSEESYPYE---ATEESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAID 137
Query: 61  S---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGP 113
           +     +    G     +   CS  D+ H VL+VGYG    + D+  YWLV+NSWG    
Sbjct: 138 AGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWG 194
Query: 114 DEGFFKIERG-NNACG 128
             G+ K+ +   N CG
Sbjct: 195 MGGYVKMAKDRRNHCG 210

>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study Of Cathepsin-L Retro-Binding Inhibitors(Compound 4) Length = 220

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 8/92 (8%)
Query: 138 ETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQ 191
           + + K +   GP+SV +++      FY      + D  CS  D+ H VL+VGYG    + 
Sbjct: 120 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--CSSEDMDHGVLVVGYGFESTES 177
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL 223
           D+  YWLV+NSWG      G+ K+    R+H 
Sbjct: 178 DNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 209

>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant Cysteine Protease Ervatamin-C Refinement With Cdna Derived Amino Acid Sequence Length = 208

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 59/129 (45%), Gaps = 13/129 (10%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
           G+++E +YPYK   G    C   K  V++   K   H N +   K +  +   +++  +S
Sbjct: 80  GIDTEANYPYKAVQGP---CRAAKKVVRIDGYKGVPHCNENALKKAVASQPSVVAIDASS 136
Query: 62  DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIE 121
                Y          T     L H V++VGY K     YW+VRNSWG    ++G+ +++
Sbjct: 137 KQFQHYKSGIFSGPCGT----KLNHGVVIVGYWKD----YWIVRNSWGRYWGEQGYIRMK 188
Query: 122 R--GNNACG 128
           R  G   CG
Sbjct: 189 RVGGCGLCG 197

>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs Free-electron Laser Pulse Data By Serial Femtosecond X-ray Crystallography Length = 340

Iteration: 1
 Score = 50.8 bits (120), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 10  PYKNANGEKFKCAY--DKSKVKLFTGKDFLHF--NGSETMKKILYKYGPLSVLLNSDLIH 65
           P    N +  KC Y  D   + +   + +  +   G +   + L+  GP  V    D+  
Sbjct: 204 PCSQFNFDTPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAF--DVYE 261
Query: 66  DYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNN 125
           D+              Y  GHAV LVG+G  + +PYW + NSW      +G+F I RG++
Sbjct: 262 DFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSS 321
Query: 126 ACG 128
            CG
Sbjct: 322 ECG 324

>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform Length = 312

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 64/136 (47%), Gaps = 16/136 (11%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLN 60
           GL+SE+ YPY+     +  C Y+  K  +     F+     E  + K +   GP+SV ++
Sbjct: 174 GLDSEESYPYE---ATEESCKYN-PKYSVANDAGFVDIPKQEKALMKAVATVGPISVAID 229
Query: 61  S---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGP 113
           +     +    G     +   CS  D+ H VL+VGYG    + D   YWLV+NSWG    
Sbjct: 230 AGHESFLFYKEGIYFEPD---CSSEDMDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWG 286
Query: 114 DEGFFKIERG-NNACG 128
             G+ K+ +   N CG
Sbjct: 287 MGGYVKMAKDRRNHCG 302

>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform Length = 312

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 8/91 (8%)
Query: 138 ETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQ 191
           + + K +   GP+SV +++      FY      + D  CS  D+ H VL+VGYG    + 
Sbjct: 212 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--CSSEDMDHGVLVVGYGFESTES 269
Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSH 222
           D   YWLV+NSWG      G+ K+    R+H
Sbjct: 270 DGNKYWLVKNSWGEEWGMGGYVKMAKDRRNH 300

>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei Length = 317

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 10  PYKNANGEKFKCAY--DKSKVKLFTGKDFLHF--NGSETMKKILYKYGPLSVLLNSDLIH 65
           P    N +  KC Y  D   + +   + +  +   G +   + L+  GP  V    D+  
Sbjct: 181 PCSQFNFDTPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAF--DVYE 238
Query: 66  DYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNN 125
           D+              Y  GHAV LVG+G  + +PYW + NSW      +G+F I RG++
Sbjct: 239 DFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSS 298
Query: 126 ACG 128
            CG
Sbjct: 299 ECG 301

>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex With Ca074 Length = 325

Iteration: 1
 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 10  PYKNANGEKFKCAY--DKSKVKLFTGKDFLHF--NGSETMKKILYKYGPLSVLLNSDLIH 65
           P    N +  KC Y  D   + +   + +  +   G +   + L+  GP  V    D+  
Sbjct: 182 PCSQFNFDTPKCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAF--DVYE 239
Query: 66  DYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNN 125
           D+              Y  GHAV LVG+G  + +PYW + NSW      +G+F I RG++
Sbjct: 240 DFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSS 299
Query: 126 ACG 128
            CG
Sbjct: 300 ECG 302

>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine Endoprotease B Isoform 2 (Ep-B2) In Complex With Leupeptin Length = 262

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 10/132 (7%)
Query: 2   GLESEKDYPYKNANG--EKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLL 59
           GL +E  YPY+ A G     + A +   V    G   +  N  E + + +    P+SV +
Sbjct: 84  GLITEAAYPYRAARGTCNVARAAQNSPVVVHIDGHQDVPANSEEDLARAVANQ-PVSVAV 142
Query: 60  NSD--LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-KQDDIPYWLVRNSWGPIGPDEG 116
            +       Y+         T    +L H V +VGYG  +D   YW V+NSWGP   ++G
Sbjct: 143 EASGKAFMFYSEGVFTGECGT----ELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQG 198
Query: 117 FFKIERGNNACG 128
           + ++E+ + A G
Sbjct: 199 YIRVEKDSGASG 210

>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine Endoprotease B Isoform 2 (Ep-B2) In Complex With Leupeptin Length = 262

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Query: 178 DLGHAVLLVGYG-KQDDIPYWLVRNSWGPIGPDEGFFKIE 216
           +L H V +VGYG  +D   YW V+NSWGP   ++G+ ++E
Sbjct: 164 ELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVE 203

>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray Crystal Structure Of A Plant Cysteine Protease Ervatamin B: Insight Into The Structural Basis Of Its Stability And Substrate Specificity Length = 215

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 14/125 (11%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
           G++++++YPY    G    C   + +V    G   +  N    ++  +    P+SV + +
Sbjct: 80  GIDTQQNYPYSAVQGS---CKPYRLRVVSINGFQRVTRNNESALQSAVASQ-PVSVTVEA 135
Query: 62  DLIHDYNGTPIRKNDETCSPYDLG----HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF 117
                  G P +           G    H V++VGYG Q    YW+VRNSWG    ++G+
Sbjct: 136 A------GAPFQHYSSGIFTGPCGTAQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGY 189
Query: 118 FKIER 122
             +ER
Sbjct: 190 IWMER 194

>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray Crystal Structure Of A Plant Cysteine Protease Ervatamin B: Insight Into The Structural Basis Of Its Stability And Substrate Specificity Length = 215

Iteration: 1
 Score = 45.1 bits (105), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 181 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHL----THDIPGVPT 232
           H V++VGYG Q    YW+VRNSWG    ++G+  +E  + S         +P  PT
Sbjct: 158 HGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPT 213

>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added To An Endopeptidase Framework Creates The Machine For Activation Of Granular Serine Proteases Length = 69

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 80  SPYDL-GHAVLLVGYG--KQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACG 128
           +P++L  HAVLLVGYG      + YW+V+NSWG    + G+F+I RG + C 
Sbjct: 4   NPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECA 55

>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added To An Endopeptidase Framework Creates The Machine For Activation Of Granular Serine Proteases Length = 69

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 175 SPYDL-GHAVLLVGYG--KQDDIPYWLVRNSWGPIGPDEGFFKIEH 217
           +P++L  HAVLLVGYG      + YW+V+NSWG    + G+F+I  
Sbjct: 4   NPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRR 49

>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of Crocus Sativus At 1.3 A Resolution Length = 222

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 7/127 (5%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
           G+ S+ +YPY   +G    C  +K       G   +  + S  +  +  +   +++  +S
Sbjct: 80  GIASDANYPYTGVDG---TCDLNKPIAARIDGYTNVPNSSSALLDAVAKQPVSVNIYTSS 136
Query: 62  DLIHDYNGTPIRKNDETCS--PYDLGHAVLLVGYGKQ-DDIPYWLVRNSWGPIGPDEGFF 118
                Y G  I     +CS  P  + H VL+VGYG    +  YW+V+NSWG     +G+ 
Sbjct: 137 TSFQLYTGPGIFAG-SSCSDDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYI 195
Query: 119 KIERGNN 125
            I R  N
Sbjct: 196 LIRRNTN 202

>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium Falciparum Length = 265

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 73  RKNDETCSPYDLGHAVLLVGYG-----KQDDIPYWLVRNSWGPIGPDEGFFKIER-GNNA 126
           +K    C      HAV +VGYG     + +   YW+VRNSWGP   DEG+FK++  G   
Sbjct: 186 KKVQNLCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTH 245
Query: 127 CGKDFLH 133
           C  +F+H
Sbjct: 246 CHFNFIH 252

>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium Falciparum Length = 265

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 168 RKNDETCSPYDLGHAVLLVGYG-----KQDDIPYWLVRNSWGPIGPDEGFFKIE 216
           +K    C      HAV +VGYG     + +   YW+VRNSWGP   DEG+FK++
Sbjct: 186 KKVQNLCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVD 239

>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium Falciparum With Loop 690-700 Ordered Length = 265

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 73  RKNDETCSPYDLGHAVLLVGYG-----KQDDIPYWLVRNSWGPIGPDEGFFKIER-GNNA 126
           +K    C      HAV +VGYG     + +   YW+VRNSWGP   DEG+FK++  G   
Sbjct: 187 KKVKNLCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTH 246
Query: 127 CGKDFLH 133
           C  +F+H
Sbjct: 247 CHFNFIH 253

>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium Falciparum With Loop 690-700 Ordered Length = 265

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 168 RKNDETCSPYDLGHAVLLVGYG-----KQDDIPYWLVRNSWGPIGPDEGFFKIE 216
           +K    C      HAV +VGYG     + +   YW+VRNSWGP   DEG+FK++
Sbjct: 187 KKVKNLCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVD 240

>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine Endopeptidase Functioning In Programmed Cell Death Of Ricinus Communis Endosperm Length = 229

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 19/130 (14%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFT--GKDFLHFNGSETMKKILYKYGPLSVLL 59
           G+ +E +YPY+  +G    C   K      +  G + +  N    + K +    P+SV +
Sbjct: 82  GITTEANYPYEAYDG---TCDVSKENAPAVSIDGHENVPENDENALLKAVANQ-PVSVAI 137
Query: 60  NSDLIHDYNGTPIRKNDE-----TCSPYDLGHAVLLVGYGKQ-DDIPYWLVRNSWGPIGP 113
                 D  G+  +   E     +C   +L H V +VGYG   D   YW V+NSWGP   
Sbjct: 138 ------DAGGSDFQFYSEGVFTGSCGT-ELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWG 190
Query: 114 DEGFFKIERG 123
           ++G+ ++ERG
Sbjct: 191 EKGYIRMERG 200

>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine Endopeptidase Functioning In Programmed Cell Death Of Ricinus Communis Endosperm Length = 229

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 178 DLGHAVLLVGYGKQ-DDIPYWLVRNSWGPIGPDEGFFKIEHTL 219
           +L H V +VGYG   D   YW V+NSWGP   ++G+ ++E  +
Sbjct: 159 ELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGI 201

>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution Length = 218

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 64/129 (49%), Gaps = 20/129 (15%)
Query: 2   GLESEKDYPYKNANGEKFKC-AYDKS--KVKLFTGKDFLHFNGSETMKKILYKYGPLSVL 58
           G+ + K YPY+    +++KC A DK   KVK+ TG   +  N   +    L    PLSVL
Sbjct: 79  GVHTSKVYPYQ---AKQYKCRATDKPGPKVKI-TGYKRVPSNXETSFLGALANQ-PLSVL 133
Query: 59  LNSDLIHDYNGTPIRKN-----DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGP 113
           + +       G P +       D  C    L HAV  VGYG  D   Y +++NSWGP   
Sbjct: 134 VEA------GGKPFQLYKSGVFDGPCGT-KLDHAVTAVGYGTSDGKNYIIIKNSWGPNWG 186
Query: 114 DEGFFKIER 122
           ++G+ +++R
Sbjct: 187 EKGYMRLKR 195

>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With Proline Specificity From Ginger Rhizome, Zingiber Officinale Length = 221

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 59/121 (48%), Gaps = 5/121 (4%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
           G+ SE+ YPY+  +G       +   V + + ++    N     K +  +  P+SV +++
Sbjct: 82  GINSEETYPYRGQDG-ICNSTVNAPVVSIDSYENVPSHNEQSLQKAVANQ--PVSVTMDA 138
Query: 62  DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIE 121
               D+          +C+     HA+ +VGYG ++D  +W+V+NSWG    + G+ + E
Sbjct: 139 -AGRDFQLYRSGIFTGSCN-ISANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAE 196
Query: 122 R 122
           R
Sbjct: 197 R 197

>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With Proline Specificity From Ginger Rhizome, Zingiber Officinale Length = 221

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 181 HAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEHTLRS 221
           HA+ +VGYG ++D  +W+V+NSWG    + G+ + E  + +
Sbjct: 161 HALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIEN 201

>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex With Its Propeptide Length = 224

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 17/115 (14%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
           G+ SE  YPY  A  E+ +    +  VK+   KD      SE   K      P+S+ + +
Sbjct: 88  GICSEDAYPYL-ARDEECRAQSCEKVVKILGFKDVPRR--SEAAMKAALAKSPVSIAIEA 144
Query: 62  DLIHDYNGTPIR-----KNDETCSPYDLGHAVLLVGYG--KQDDIPYWLVRNSWG 109
           D +      P +       D +C   DL H VLLVGYG  K+    +W+++NSWG
Sbjct: 145 DQM------PFQFYHEGVFDASCGT-DLDHGVLLVGYGTDKESKKDFWIMKNSWG 192

>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana Length = 214

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 66/131 (50%), Gaps = 24/131 (18%)
Query: 2   GLESEKDYPYKNANGEKFKC-AYDKSKVKLF-TGKDFLHFNGSETMKKILYKYGPLSVLL 59
           G+ +E++YPY+   G   +C A DK   K++ TG  ++  N   ++ + +    P+SV+ 
Sbjct: 79  GVHTEREYPYEKKQG---RCRAKDKKGPKVYITGYKYVPANDEISLIQAIANQ-PVSVVT 134
Query: 60  NSDL--IHDYNGT----PIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGP 113
           +S       Y G     P   N +        HAV  VGYGK     Y L++NSWGP   
Sbjct: 135 DSRGRGFQFYKGGIYEGPCGTNTD--------HAVTAVGYGKT----YLLLKNSWGPNWG 182
Query: 114 DEGFFKIERGN 124
           ++G+ +I+R +
Sbjct: 183 EKGYIRIKRAS 193

>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine Protease Ervatamin C Length = 208

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 15/136 (11%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKK-ILYKYGPLSVLLN 60
           G++++ +YPYK   G         SKV    G + + F     +K+ +  +   +++  +
Sbjct: 80  GIDTQANYPYKAVQGP----CQAASKVVSIDGYNGVPFCNEXALKQAVAVQPSTVAIDAS 135
Query: 61  SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
           S     Y+         T     L H V +VGY       YW+VRNSWG    ++G+ ++
Sbjct: 136 SAQFQQYSSGIFSGPCGT----KLNHGVTIVGY----QANYWIVRNSWGRYWGEKGYIRM 187
Query: 121 ER--GNNACGKDFLHF 134
            R  G   CG   L +
Sbjct: 188 LRVGGCGLCGIARLPY 203

>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1 Length = 223

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 67  YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNN 125
           Y+G  I ++D    P    HAV +VGYG      YW+VRNSW     D G+   + GNN
Sbjct: 154 YDGRTIIQHDNGYQPNY--HAVNIVGYGSTQGDDYWIVRNSWDTTWGDSGYGYFQAGNN 210

>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera Length = 217

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 63/133 (47%), Gaps = 13/133 (9%)
Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSE-TMKKILYKYGPLSVLLN 60
           GL+SE+ YPY+     +  C Y+  K  +     F+     E  + K +   GP+SV ++
Sbjct: 82  GLDSEESYPYE---ATEESCKYNP-KYSVANDVGFVDIPKQEKALMKAVATVGPISVAID 137
Query: 61  S---DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG-KQDDIPYWLVRNSWGPIGPDEG 116
           +     +    G     +  +     L HA+L+VGYG   ++  YWLV+NSWG      G
Sbjct: 138 AGHESFLFYKEGIYFSSDCSS---SSLNHAMLVVGYGFISNNQKYWLVKNSWGEEWGMGG 194
Query: 117 FFKIERG-NNACG 128
           + K+ +   N CG
Sbjct: 195 YVKMAKDRRNHCG 207

>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen Der P 1 In Its Pro Form At 1.61 A Resolution Length = 312

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 40  NGSETMKKILYKYGPLSVLL---NSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ 96
           N ++  + +   +  ++V++   + D    Y+G  I + D    P    HAV +VGY   
Sbjct: 203 NANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPN--YHAVNIVGYSNA 260
Query: 97  DDIPYWLVRNSWGPIGPDEGF 117
             + YW+VRNSW     D G+
Sbjct: 261 QGVDYWIVRNSWDTNWGDNGY 281

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	233
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	4e-35
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	8e-22
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	6e-33
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	2e-19
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	7e-29
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	6e-17
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	1e-28
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	2e-16
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	3e-28
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	7e-18
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	1e-27
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	8e-19
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	1e-27
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	5e-16
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	4e-27
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	2e-18
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	9e-27
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	3e-16
2wbf_X	265	Serine-repeat antigen protein; SERA, malaria, vacu	2e-26
2wbf_X	265	Serine-repeat antigen protein; SERA, malaria, vacu	1e-17
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	8e-26
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	4e-17
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	1e-25
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	3e-17
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	2e-25
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	2e-17
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	2e-25
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	5e-17
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	1e-24
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	4e-16
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	1e-23
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	1e-14
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	1e-23
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	1e-14
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	6e-23
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	9e-17
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	1e-22
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	6e-14
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	2e-22
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	3e-17
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	3e-22
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	4e-16
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	3e-22
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	6e-14
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	3e-22
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	2e-13
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	3e-22
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	2e-12
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	5e-22
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	1e-17
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	2e-21
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	4e-14
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	2e-21
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	3e-13
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	5e-21
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	1e-11
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	9e-21
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	2e-13
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	1e-20
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	2e-12
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	7e-20
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	5e-11
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	7e-20
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	2e-12
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	8e-20
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	5e-11
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	2e-19
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	1e-11
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	2e-19
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	1e-08
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	4e-19
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	5e-11
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	5e-19
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	7e-11
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	1e-18
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	2e-11
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	3e-18
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	1e-11
3pw3_A	383	Aminopeptidase C; bleomycin, cysteine proteinase f	9e-04
3pw3_A	383	Aminopeptidase C; bleomycin, cysteine proteinase f	9e-04

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1 Length = 214

 Score =  123 bits (311), Expect = 4e-35
 Identities = 46/128 (35%), Positives = 73/128 (57%), Gaps = 5/128 (3%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSET-MKKILYKYGPLSVLLN 60
           GLE+E DY Y+        C +   K K+   +D +  + +E  +   L K GP+SV +N
Sbjct: 80  GLETEDDYSYQGHMQ---SCQFSAEKAKV-YIQDSVELSQNEQKLAAWLAKRGPISVAIN 135

Query: 61  SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
           +  +  Y     R     CSP+ + HAVLLVGYG++ D+P+W ++NSWG    ++G++ +
Sbjct: 136 AFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYL 195

Query: 121 ERGNNACG 128
            RG+ ACG
Sbjct: 196 HRGSGACG 203

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1 Length = 214

 Score = 88.7 bits (221), Expect = 8e-22
 Identities = 30/79 (37%), Positives = 49/79 (62%)

Query: 138 ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYW 197
           + +   L K GP+SV +N+  + FY     R     CSP+ + HAVLLVGYG++ D+P+W
Sbjct: 118 QKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFW 177

Query: 198 LVRNSWGPIGPDEGFFKIE 216
            ++NSWG    ++G++ + 
Sbjct: 178 AIKNSWGTDWGEKGYYYLH 196

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ... Length = 215

 Score =  117 bits (296), Expect = 6e-33
 Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 12/131 (9%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHFNGSETMKKILYKYGPLSVLLN 60
            + +E  YPY +  G    C      V    TG   L  +    +   L   GP++V ++
Sbjct: 82  AVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQD-EAQIAAWLAVNGPVAVAVD 140

Query: 61  SDLIHDYNG---TPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF 117
           +     Y G   T        C    L H VLLVGY     +PYW+++NSW     +EG+
Sbjct: 141 ASSWMTYTGGVMTS-------CVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGY 193

Query: 118 FKIERGNNACG 128
            +I +G+N C 
Sbjct: 194 IRIAKGSNQCL 204

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ... Length = 215

 Score = 81.8 bits (203), Expect = 2e-19
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 10/84 (11%)

Query: 136 GSETMKKILYKYGPLSVGLNSHLIHFYNG---TPIRKNDETCSPYDLGHAVLLVGYGKQD 192
               +   L   GP++V +++     Y G   T        C    L H VLLVGY    
Sbjct: 121 DEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTS-------CVSEQLDHGVLLVGYNDSA 173

Query: 193 DIPYWLVRNSWGPIGPDEGFFKIE 216
            +PYW+++NSW     +EG+ +I 
Sbjct: 174 AVPYWIIKNSWTTQWGEEGYIRIA 197

>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein, hydrola protease, secreted, thiol protease; HET: P6G; 1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A 3rvw_A* 3rvx_A 3rvv_A* 3d6s_A* Length = 222

 Score =  107 bits (269), Expect = 7e-29
 Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 9/131 (6%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYK-YGPLSVLLN 60
           G+  E  Y Y         C    ++    +    ++   +  +++ L + +  ++V++ 
Sbjct: 87  GVVQESYYRYVAREQ---SCRRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIG 143

Query: 61  SDLIHD---YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF 117
              +     Y+G  I             HAV +VGY     + YW+VRNSW     D G+
Sbjct: 144 IKDLDAFRHYDGRTI--IQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 201

Query: 118 FKIERGNNACG 128
                  +   
Sbjct: 202 GYFAANIDLMM 212

>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein, hydrola protease, secreted, thiol protease; HET: P6G; 1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A 3rvw_A* 3rvx_A 3rvv_A* 3d6s_A* Length = 222

 Score = 75.6 bits (187), Expect = 6e-17
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 7/86 (8%)

Query: 136 GSET--MKKILYKYGPLSVGLN-SHLI--HFYNGTPIRKNDETCSPYDLGHAVLLVGYGK 190
            +     + +   +  ++V +    L     Y+G  I             HAV +VGY  
Sbjct: 122 PNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTI--IQRDNGYQPNYHAVNIVGYSN 179

Query: 191 QDDIPYWLVRNSWGPIGPDEGFFKIE 216
              + YW+VRNSW     D G+    
Sbjct: 180 AQGVDYWIVRNSWDTNWGDNGYGYFA 205

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* Length = 441

 Score =  110 bits (277), Expect = 1e-28
 Identities = 40/136 (29%), Positives = 57/136 (41%), Gaps = 10/136 (7%)

Query: 2   GLESEKDYPYKNANGE-KFKCAYDKSKVKLFTGKDFLHFNGSET-MKKILYKYGPLSVLL 59
           GL  E  +PY   +   K K    +     +      +   +E  MK  L  +GP++V  
Sbjct: 291 GLVEEACFPYTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAF 350

Query: 60  N--SDLIHDYNG---TPIRKNDETCSPYDLGHAVLLVGYG--KQDDIPYWLVRNSWGPIG 112
               D +H Y           D         HAVLLVGYG      + YW+V+NSWG   
Sbjct: 351 EVYDDFLH-YKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGW 409

Query: 113 PDEGFFKIERGNNACG 128
            + G+F+I RG + C 
Sbjct: 410 GENGYFRIRRGTDECA 425

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* Length = 441

 Score = 76.8 bits (189), Expect = 2e-16
 Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 6/85 (7%)

Query: 138 ETMKKILYKYGPLSVGLNSHL-IHFYNG---TPIRKNDETCSPYDLGHAVLLVGYG--KQ 191
             MK  L  +GP++V    +     Y           D         HAVLLVGYG    
Sbjct: 334 ALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSA 393

Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIE 216
             + YW+V+NSWG    + G+F+I 
Sbjct: 394 SGMDYWIVKNSWGTGWGENGYFRIR 418

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A* Length = 220

 Score =  105 bits (265), Expect = 3e-28
 Identities = 46/138 (33%), Positives = 64/138 (46%), Gaps = 23/138 (16%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHFNGSETMKKILYKYGPLSVLLN 60
           G+  E  YPYK  +     C +   K   F      +  N  E M + +  Y P+S    
Sbjct: 83  GIMGEDTYPYKGQDD---HCKFQPDKAIAFVKDVANITMNDEEAMVEAVALYNPVSFAFE 139

Query: 61  SDLIHD--------YNGTPIRKNDETC--SPYDLGHAVLLVGYGKQDDIPYWLVRNSWGP 110
               +D        Y+         +C  +P  + HAVL VGYG+++ IPYW+V+NSWGP
Sbjct: 140 VT--NDFLMYRKGIYS-------STSCHKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGP 190

Query: 111 IGPDEGFFKIERGNNACG 128
                G+F IERG N CG
Sbjct: 191 QWGMNGYFLIERGKNMCG 208

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A* Length = 220

 Score = 78.3 bits (194), Expect = 7e-18
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 12/88 (13%)

Query: 136 GSET-MKKILYKYGPLSVGLN-SHLIHFYNGTPIRK---NDETC--SPYDLGHAVLLVGY 188
             E  M + +  Y P+S     ++    Y     RK   +  +C  +P  + HAVL VGY
Sbjct: 119 NDEEAMVEAVALYNPVSFAFEVTNDFLMY-----RKGIYSSTSCHKTPDKVNHAVLAVGY 173

Query: 189 GKQDDIPYWLVRNSWGPIGPDEGFFKIE 216
           G+++ IPYW+V+NSWGP     G+F IE
Sbjct: 174 GEENGIPYWIVKNSWGPQWGMNGYFLIE 201

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A Length = 277

 Score =  105 bits (264), Expect = 1e-27
 Identities = 37/155 (23%), Positives = 57/155 (36%), Gaps = 23/155 (14%)

Query: 2   GLESEKDYPYKNANGE-----------KFKCAYDKSKVKLFTGKDFLHFNGSETMKKILY 50
           G+  E    Y+  + E           +FK  +      L+   D+   +G E M   +Y
Sbjct: 122 GIPDETCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIY 181

Query: 51  KYGPLSVLLN--SDLIHDYNG---TPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVR 105
             GP+S  +     L + Y G          E      + H V + G+G  D   YW+VR
Sbjct: 182 ANGPISCGIMATERLAN-YTGGIYA------EYQDTTYINHVVSVAGWGISDGTEYWIVR 234

Query: 106 NSWGPIGPDEGFFKIERGNNACGKDFLHFNGSETM 140
           NSWG    + G+ +I       GK   +    E  
Sbjct: 235 NSWGEPWGERGWLRIVTSTYKDGKGARYNLAIEEH 269

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A Length = 277

 Score = 81.6 bits (202), Expect = 8e-19
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 10/92 (10%)

Query: 129 KDFLHFNGSETMKKILYKYGPLSVGLN-SHLIHFYNG---TPIRKNDETCSPYDLGHAVL 184
            D+   +G E M   +Y  GP+S G+  +  +  Y G          E      + H V 
Sbjct: 165 GDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYA------EYQDTTYINHVVS 218

Query: 185 LVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIE 216
           + G+G  D   YW+VRNSWG    + G+ +I 
Sbjct: 219 VAGWGISDGTEYWIVRNSWGEPWGERGWLRIV 250

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 Length = 312

 Score =  105 bits (265), Expect = 1e-27
 Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 9/131 (6%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYK-YGPLSVLLN 60
           G+  E  Y Y         C    ++    +    ++   +  +++ L + +  ++V++ 
Sbjct: 167 GVVQESYYRYVAREQ---SCRRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIG 223

Query: 61  SDLIHD---YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF 117
              +     Y+G  I             HAV +VGY     + YW+VRNSW     D G+
Sbjct: 224 IKDLDAFRHYDGRTI--IQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 281

Query: 118 FKIERGNNACG 128
                  +   
Sbjct: 282 GYFAANIDLMM 292

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 Length = 312

 Score = 74.6 bits (184), Expect = 5e-16
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 7/86 (8%)

Query: 136 GSET--MKKILYKYGPLSVGLN-SHLI--HFYNGTPIRKNDETCSPYDLGHAVLLVGYGK 190
            +     + +   +  ++V +    L     Y+G  I             HAV +VGY  
Sbjct: 202 PNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTI--IQRDNGYQPNYHAVNIVGYSN 259

Query: 191 QDDIPYWLVRNSWGPIGPDEGFFKIE 216
              + YW+VRNSW     D G+    
Sbjct: 260 AQGVDYWIVRNSWDTNWGDNGYGYFA 285

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} Length = 331

 Score =  105 bits (263), Expect = 4e-27
 Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 22/137 (16%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHFNGSETMKKILYKYGPLSVLLN 60
           G++SE  YPY+ A+G    C YD ++V    +G  +L       +  ++   GP++V  +
Sbjct: 197 GIDSEGAYPYEMADG---NCHYDPNQVAARLSGYVYLSGPDENMLADMVATKGPVAVAFD 253

Query: 61  SDLIHD--------YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIG 112
           +D            Y          TC      HAVL+VGYG ++   YWLV+NSWG   
Sbjct: 254 AD--DPFGSYSGGVYYN-------PTCETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGW 304

Query: 113 PDEGFFKIERG-NNACG 128
             +G+FKI R  NN CG
Sbjct: 305 GLDGYFKIARNANNHCG 321

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} Length = 331

 Score = 81.1 bits (201), Expect = 2e-18
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 136 GSET-MKKILYKYGPLSVGLN-SHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDD 193
             E  +  ++   GP++V  +       Y+G      + TC      HAVL+VGYG ++ 
Sbjct: 233 PDENMLADMVATKGPVAVAFDADDPFGSYSGGVY--YNPTCETNKFTHAVLIVGYGNENG 290

Query: 194 IPYWLVRNSWGPIGPDEGFFKIE 216
             YWLV+NSWG     +G+FKI 
Sbjct: 291 QDYWLVKNSWGDGWGLDGYFKIA 313

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} PDB: 3mor_A* Length = 325

 Score =  103 bits (260), Expect = 9e-27
 Identities = 38/155 (24%), Positives = 55/155 (35%), Gaps = 36/155 (23%)

Query: 2   GLESEKDYPYKNANGE----------------------KFKCAYDKSKVKLFTGKDFLHF 39
           GL S+   PY   +                         + C      V  +        
Sbjct: 156 GLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPTIPVVNYRSWTSYAL 215

Query: 40  NGSETMKKILYKYGPLSVLLN--SDLIHDYNGTPIRKN---DETCSPYDLGHAVLLVGYG 94
            G +   + L+  GP  V  +   D I  Y       +         Y  GHAV LVG+G
Sbjct: 216 QGEDDYMRELFFRGPFEVAFDVYEDFIA-Y------NSGVYHHVSGQYLGGHAVRLVGWG 268

Query: 95  KQDDIPYWLVRNSWGPI-GPDEGFFKIERGNNACG 128
             + +PYW + NSW    G  +G+F I RG++ CG
Sbjct: 269 TSNGVPYWKIANSWNTEWG-MDGYFLIRRGSSECG 302

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} PDB: 3mor_A* Length = 325

 Score = 75.5 bits (186), Expect = 3e-16
 Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 12/94 (12%)

Query: 128 GKDFLHFNGSETMKKILYKYGPLSVGLNSHL-IHFYNGTPIRKN---DETCSPYDLGHAV 183
                   G +   + L+  GP  V  + +     Y       +         Y  GHAV
Sbjct: 209 SWTSYALQGEDDYMRELFFRGPFEVAFDVYEDFIAY------NSGVYHHVSGQYLGGHAV 262

Query: 184 LLVGYGKQDDIPYWLVRNSWGPI-GPDEGFFKIE 216
            LVG+G  + +PYW + NSW    G  +G+F I 
Sbjct: 263 RLVGWGTSNGVPYWKIANSWNTEWG-MDGYFLIR 295

>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X Length = 265

 Score =  101 bits (254), Expect = 2e-26
 Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 36/165 (21%)

Query: 2   GLESEKDYPYK---------------NANGEKFKCAYDKSKVKLFTGKDFLHFNGS---- 42
            L +E +YPY                    +  K  ++K++     GK +  +       
Sbjct: 92  FLPAESNYPYNYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAYESERFHD 151

Query: 43  ------ETMKKILYKYGPLSVLLN--SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG 94
                 + +K  +   G +   +   + + ++++G   +K    C      HAV +VGYG
Sbjct: 152 NMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSG---KKVKNLCGDDTADHAVNIVGYG 208

Query: 95  KQDDI-----PYWLVRNSWGPIGPDEGFFKIER-GNNACGKDFLH 133
              +       YW+VRNSWGP   DEG+FK++  G   C  +F+H
Sbjct: 209 NYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTHCHFNFIH 253

>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X Length = 265

 Score = 78.1 bits (193), Expect = 1e-17
 Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 138 ETMKKILYKYGPLSVGLN-SHLI-HFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDI- 194
           + +K  +   G +   +   +++ + ++G   +K    C      HAV +VGYG   +  
Sbjct: 158 KIIKTEVMNKGSVIAYIKAENVMGYEFSG---KKVKNLCGDDTADHAVNIVGYGNYVNSE 214

Query: 195 ----PYWLVRNSWGPIGPDEGFFKIE 216
                YW+VRNSWGP   DEG+FK++
Sbjct: 215 GEKKSYWIVRNSWGPYWGDEGYFKVD 240

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ... Length = 215

 Score = 99.1 bits (248), Expect = 8e-26
 Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 23/138 (16%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHFNGSETMKKILYKYGPLSVLLN 60
           G++SE  YPY         C Y+ +       G   +     + +K+ + + GP+SV ++
Sbjct: 80  GIDSEDAYPYVGQEE---SCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAID 136

Query: 61  SDLIHD---------YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPI 111
           +              Y        DE+C+  +L HAVL VGYG Q    +W+++NSWG  
Sbjct: 137 AS--LTSFQFYSKGVY-------YDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGEN 187

Query: 112 GPDEGFFKIERG-NNACG 128
             ++G+  + R  NNACG
Sbjct: 188 WGNKGYILMARNKNNACG 205

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ... Length = 215

 Score = 76.0 bits (188), Expect = 4e-17
 Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 15/89 (16%)

Query: 136 GSET-MKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVG 187
           G+E  +K+ + + GP+SV +++ L  F       Y        DE+C+  +L HAVL VG
Sbjct: 116 GNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYY-------DESCNSDNLNHAVLAVG 168

Query: 188 YGKQDDIPYWLVRNSWGPIGPDEGFFKIE 216
           YG Q    +W+++NSWG    ++G+  + 
Sbjct: 169 YGIQKGNKHWIIKNSWGENWGNKGYILMA 197

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} Length = 310

 Score =  100 bits (252), Expect = 1e-25
 Identities = 45/137 (32%), Positives = 64/137 (46%), Gaps = 22/137 (16%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHFNGSETMKKILYKYGPLSVLLN 60
           GLE+E  YPY    G   +C Y+K       TG   +H      +K ++   GP +V ++
Sbjct: 172 GLETESSYPYTAVEG---QCRYNKQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVD 228

Query: 61  SDLIHD--------YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIG 112
            +   D        Y         +TCSP  + HAVL VGYG Q    YW+V+NSWG   
Sbjct: 229 VE--SDFMMYRSGIYQS-------QTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSW 279

Query: 113 PDEGFFKIERG-NNACG 128
            + G+ ++ R   N CG
Sbjct: 280 GERGYIRMVRNRGNMCG 296

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} Length = 310

 Score = 77.7 bits (192), Expect = 3e-17
 Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 10/86 (11%)

Query: 136 GSET-MKKILYKYGPLSVGLN-SHLIHFYNGTPIRK---NDETCSPYDLGHAVLLVGYGK 190
           GSE  +K ++   GP +V ++       Y     R      +TCSP  + HAVL VGYG 
Sbjct: 208 GSEVELKNLVGAEGPAAVAVDVESDFMMY-----RSGIYQSQTCSPLRVNHAVLAVGYGT 262

Query: 191 QDDIPYWLVRNSWGPIGPDEGFFKIE 216
           Q    YW+V+NSWG    + G+ ++ 
Sbjct: 263 QGGTDYWIVKNSWGLSWGERGYIRMV 288

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor} Length = 329

 Score =  100 bits (252), Expect = 2e-25
 Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 8/130 (6%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHFNGSETMKKILYKYGPLSVLLN 60
           G+ SE  YPY+        C +D S+     +G   L      ++   + + GP++V ++
Sbjct: 195 GIMSESAYPYEAQGD---YCRFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAID 251

Query: 61  -SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
            +D +  Y+G      D+TC+  DL H VL+VGYG  +   YW+++NSWG    + G+++
Sbjct: 252 ATDELQFYSGGLF--YDQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGYWR 309

Query: 120 IERG-NNACG 128
             R   N CG
Sbjct: 310 QVRNYGNNCG 319

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor} Length = 329

 Score = 78.5 bits (194), Expect = 2e-17
 Identities = 27/83 (32%), Positives = 48/83 (57%), Gaps = 4/83 (4%)

Query: 136 GSET-MKKILYKYGPLSVGLN-SHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDD 193
           G E  +   + + GP++V ++ +  + FY+G      D+TC+  DL H VL+VGYG  + 
Sbjct: 231 GDENSLADAVGQAGPVAVAIDATDELQFYSGGLF--YDQTCNQSDLNHGVLVVGYGSDNG 288

Query: 194 IPYWLVRNSWGPIGPDEGFFKIE 216
             YW+++NSWG    + G+++  
Sbjct: 289 QDYWILKNSWGSGWGESGYWRQV 311

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A* Length = 246

 Score = 98.8 bits (247), Expect = 2e-25
 Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 17/139 (12%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKL----FTGKDFLHFN---GSETMKKILYKYGP 54
           G+ SE DYPYK  +G   KC  ++ + K+    +  +   + +    +E+  +      P
Sbjct: 81  GIASEADYPYKARDG---KCKANEIQDKVTIDNYGVQILSNESTESEAESSLQSFVLEQP 137

Query: 55  LSVLLNSDLIHDYNGTPIRKNDETCS-PYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGP 113
           +SV +++   H Y+G     +   CS PY + H VL+VGYG +D + YW+ +NSWG    
Sbjct: 138 ISVSIDAKDFHFYSGGIY--DGGNCSSPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWG 195

Query: 114 DEGFFKIERGNNA----CG 128
            +G+ +I+R        CG
Sbjct: 196 IDGYIRIQRNTGNLLGVCG 214

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A* Length = 246

 Score = 76.5 bits (189), Expect = 5e-17
 Identities = 28/82 (34%), Positives = 47/82 (57%), Gaps = 3/82 (3%)

Query: 136 GSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCS-PYDLGHAVLLVGYGKQDDI 194
            +E+  +      P+SV +++   HFY+G     +   CS PY + H VL+VGYG +D +
Sbjct: 124 EAESSLQSFVLEQPISVSIDAKDFHFYSGGIY--DGGNCSSPYGINHFVLIVGYGSEDGV 181

Query: 195 PYWLVRNSWGPIGPDEGFFKIE 216
            YW+ +NSWG     +G+ +I+
Sbjct: 182 DYWIAKNSWGEDWGIDGYIRIQ 203

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A Length = 314

 Score = 98.1 bits (245), Expect = 1e-24
 Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 15/134 (11%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHFNGSETMKKILYKYGPLSVLLN 60
           G++SE  YPY         C Y+ +       G   +     + +K+ + + GP+SV ++
Sbjct: 179 GIDSEDAYPYVGQEE---SCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAID 235

Query: 61  SDLI--HDYNGTPIRK---NDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDE 115
           + L     Y      K    DE+C+  +L HAVL VGYG Q    +W+++NSWG    ++
Sbjct: 236 ASLTSFQFY-----SKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNK 290

Query: 116 GFFKIERG-NNACG 128
           G+  + R  NNACG
Sbjct: 291 GYILMARNKNNACG 304

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A Length = 314

 Score = 75.0 bits (185), Expect = 4e-16
 Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 15/89 (16%)

Query: 136 GSET-MKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVG 187
           G+E  +K+ + + GP+SV +++ L  F       Y        DE+C+  +L HAVL VG
Sbjct: 215 GNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYY-------DESCNSDNLNHAVLAVG 267

Query: 188 YGKQDDIPYWLVRNSWGPIGPDEGFFKIE 216
           YG Q    +W+++NSWG    ++G+  + 
Sbjct: 268 YGIQKGNKHWIIKNSWGENWGNKGYILMA 296

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ... Length = 220

 Score = 93.7 bits (234), Expect = 1e-23
 Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 28/142 (19%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSET-MKKILYKYGPLSVLLN 60
           GL+SE+ YPY+        C Y+           F+     E  + K +   GP+SV ++
Sbjct: 82  GLDSEESYPYEATEE---SCKYNPKYSVA-NDTGFVDIPKQEKALMKAVATVGPISVAID 137

Query: 61  SDLIHD---------YNGTPIRKNDETCSPYDLGHAVLLVGYGKQ----DDIPYWLVRNS 107
           +   H+         Y        +  CS  D+ H VL+VGYG +    D+  YWLV+NS
Sbjct: 138 AG--HESFLFYKEGIY-------FEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNS 188

Query: 108 WGPIGPDEGFFKIERG-NNACG 128
           WG      G+ K+ +   N CG
Sbjct: 189 WGEEWGMGGYVKMAKDRRNHCG 210

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ... Length = 220

 Score = 69.5 bits (171), Expect = 1e-14
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 18/93 (19%)

Query: 135 NGSETMKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVG 187
              + + K +   GP+SV +++    F       Y        +  CS  D+ H VL+VG
Sbjct: 117 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYF-------EPDCSSEDMDHGVLVVG 169

Query: 188 YGKQ----DDIPYWLVRNSWGPIGPDEGFFKIE 216
           YG +    D+  YWLV+NSWG      G+ K+ 
Sbjct: 170 YGFESTESDNNKYWLVKNSWGEEWGMGGYVKMA 202

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ... Length = 218

 Score = 93.3 bits (233), Expect = 1e-23
 Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 12/132 (9%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHFNGSETMKKILYKYGPLSVLLN 60
           G++S+  YPYK  +    KC YD        +    L +   + +K+ +   GP+SV ++
Sbjct: 84  GIDSDASYPYKAMDQ---KCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVD 140

Query: 61  ---SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF 117
                     +G      + +C+  ++ H VL+VGYG  +   YWLV+NSWG    +EG+
Sbjct: 141 ARHPSFFLYRSGV---YYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGY 196

Query: 118 FKIERG-NNACG 128
            ++ R   N CG
Sbjct: 197 IRMARNKGNHCG 208

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ... Length = 218

 Score = 69.5 bits (171), Expect = 1e-14
 Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 8/85 (9%)

Query: 136 GSET-MKKILYKYGPLSVGLN-SHLI-HFY-NGTPIRKNDETCSPYDLGHAVLLVGYGKQ 191
           G E  +K+ +   GP+SVG++  H     Y +G      + +C+  ++ H VL+VGYG  
Sbjct: 120 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGV---YYEPSCTQ-NVNHGVLVVGYGDL 175

Query: 192 DDIPYWLVRNSWGPIGPDEGFFKIE 216
           +   YWLV+NSWG    +EG+ ++ 
Sbjct: 176 NGKEYWLVKNSWGHNFGEEGYIRMA 200

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ... Length = 266

 Score = 92.7 bits (231), Expect = 6e-23
 Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 14/109 (12%)

Query: 26  SKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN--SDLIHDYNGTPIRKN---DETCS 80
            + K +    +   N  + +   +YK GP+    +  SD +  Y      K+        
Sbjct: 147 KQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLL-Y------KSGVYQHVTG 199

Query: 81  PYDLGHAVLLVGYGKQDDIPYWLVRNSWGPI-GPDEGFFKIERGNNACG 128
               GHA+ ++G+G ++  PYWLV NSW    G D GFFKI RG + CG
Sbjct: 200 EMMGGHAIRILGWGVENGTPYWLVANSWNTDWG-DNGFFKILRGQDHCG 247

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ... Length = 266

 Score = 75.8 bits (187), Expect = 9e-17
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 12/86 (13%)

Query: 135 NGSETMKKILYKYGPLSVGLNSHL-IHFYNGTPIRKN---DETCSPYDLGHAVLLVGYGK 190
           N  + +   +YK GP+    + +     Y      K+            GHA+ ++G+G 
Sbjct: 161 NSEKDIMAEIYKNGPVEGAFSVYSDFLLY------KSGVYQHVTGEMMGGHAIRILGWGV 214

Query: 191 QDDIPYWLVRNSWGPI-GPDEGFFKI 215
           ++  PYWLV NSW    G D GFFKI
Sbjct: 215 ENGTPYWLVANSWNTDWG-DNGFFKI 239

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} Length = 315

 Score = 92.7 bits (231), Expect = 1e-22
 Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 12/132 (9%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLF-TGKDFLHFNGSETMKKILYKYGPLSVLLN 60
           G++S+  YPYK  +    KC YD        +    L +   + +K+ +   GP+SV ++
Sbjct: 181 GIDSDASYPYKAMDQ---KCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVD 237

Query: 61  SDLI--HDY-NGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF 117
           +       Y +G      + +C+  ++ H VL+VGYG  +   YWLV+NSWG    +EG+
Sbjct: 238 ARHPSFFLYRSGV---YYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGY 293

Query: 118 FKIERG-NNACG 128
            ++ R   N CG
Sbjct: 294 IRMARNKGNHCG 305

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} Length = 315

 Score = 68.4 bits (168), Expect = 6e-14
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 16/89 (17%)

Query: 136 GSET-MKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVG 187
           G E  +K+ +   GP+SVG+++    F       Y        + +C+  ++ H VL+VG
Sbjct: 217 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYY-------EPSCTQ-NVNHGVLVVG 268

Query: 188 YGKQDDIPYWLVRNSWGPIGPDEGFFKIE 216
           YG  +   YWLV+NSWG    +EG+ ++ 
Sbjct: 269 YGDLNGKEYWLVKNSWGHNFGEEGYIRMA 297

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A* Length = 254

 Score = 91.1 bits (227), Expect = 2e-22
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 14/115 (12%)

Query: 20  KCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN--SDLIHDYNGTPIRKN-- 75
           K     ++ K      +   N  + ++K + KYGP+        D ++ Y      K+  
Sbjct: 137 KYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYEDFLN-Y------KSGI 189

Query: 76  -DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPI-GPDEGFFKIERGNNACG 128
                     GHA+ ++G+G ++  PYWL+ NSW    G + G+F+I RG + C 
Sbjct: 190 YKHITGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWG-ENGYFRIVRGRDECS 243

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A* Length = 254

 Score = 76.9 bits (190), Expect = 3e-17
 Identities = 25/87 (28%), Positives = 42/87 (48%), Gaps = 12/87 (13%)

Query: 135 NGSETMKKILYKYGPLSVGLNSHL-IHFYNGTPIRKN---DETCSPYDLGHAVLLVGYGK 190
           N  + ++K + KYGP+  G   +     Y      K+            GHA+ ++G+G 
Sbjct: 157 NDEKAIQKEIMKYGPVEAGFTVYEDFLNY------KSGIYKHITGETLGGHAIRIIGWGV 210

Query: 191 QDDIPYWLVRNSWGPI-GPDEGFFKIE 216
           ++  PYWL+ NSW    G + G+F+I 
Sbjct: 211 ENKAPYWLIANSWNEDWG-ENGYFRIV 236

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A Length = 317

 Score = 92.0 bits (229), Expect = 3e-22
 Identities = 34/109 (31%), Positives = 51/109 (46%), Gaps = 14/109 (12%)

Query: 26  SKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN--SDLIHDYNGTPIRKN---DETCS 80
            + K +    +   N  + +   +YK GP+    +  SD +  Y      K+        
Sbjct: 204 KQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLL-Y------KSGVYQHVTG 256

Query: 81  PYDLGHAVLLVGYGKQDDIPYWLVRNSWGPI-GPDEGFFKIERGNNACG 128
               GHA+ ++G+G ++  PYWLV NSW    G D GFFKI RG + CG
Sbjct: 257 EMMGGHAIRILGWGVENGTPYWLVANSWNTDWG-DNGFFKILRGQDHCG 304

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A Length = 317

 Score = 74.7 bits (184), Expect = 4e-16
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 12/87 (13%)

Query: 135 NGSETMKKILYKYGPLSVGLNSHL-IHFYNGTPIRKN---DETCSPYDLGHAVLLVGYGK 190
           N  + +   +YK GP+    + +     Y      K+            GHA+ ++G+G 
Sbjct: 218 NSEKDIMAEIYKNGPVEGAFSVYSDFLLY------KSGVYQHVTGEMMGGHAIRILGWGV 271

Query: 191 QDDIPYWLVRNSWGPI-GPDEGFFKIE 216
           ++  PYWLV NSW    G D GFFKI 
Sbjct: 272 ENGTPYWLVANSWNTDWG-DNGFFKIL 297

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A* Length = 316

 Score = 91.9 bits (229), Expect = 3e-22
 Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 28/142 (19%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSET-MKKILYKYGPLSVLLN 60
           GL+SE+ YPY+        C Y+           F+     E  + K +   GP+SV ++
Sbjct: 178 GLDSEESYPYEATEE---SCKYNPKYSVA-NDAGFVDIPKQEKALMKAVATVGPISVAID 233

Query: 61  SDLIHD---------YNGTPIRKNDETCSPYDLGHAVLLVGYG----KQDDIPYWLVRNS 107
           +   H+         Y        +  CS  D+ H VL+VGYG    + D+  YWLV+NS
Sbjct: 234 AG--HESFLFYKEGIY-------FEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNS 284

Query: 108 WGPIGPDEGFFKIERG-NNACG 128
           WG      G+ K+ +   N CG
Sbjct: 285 WGEEWGMGGYVKMAKDRRNHCG 306

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A* Length = 316

 Score = 68.8 bits (169), Expect = 6e-14
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 18/93 (19%)

Query: 135 NGSETMKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVG 187
              + + K +   GP+SV +++    F       Y        +  CS  D+ H VL+VG
Sbjct: 213 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYF-------EPDCSSEDMDHGVLVVG 265

Query: 188 YG----KQDDIPYWLVRNSWGPIGPDEGFFKIE 216
           YG    + D+  YWLV+NSWG      G+ K+ 
Sbjct: 266 YGFESTESDNNKYWLVKNSWGEEWGMGGYVKMA 298

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A* Length = 216

 Score = 89.8 bits (224), Expect = 3e-22
 Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 16/135 (11%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
           G+     YPYK   G    C   +    +        +  N    +   + K  P+SV++
Sbjct: 79  GIHLRSKYPYKAKQG---TCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAK-QPVSVVV 134

Query: 60  NSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF 117
            S       Y G      +  C    + HAV  VGYGK     Y L++NSWG    ++G+
Sbjct: 135 ESKGRPFQLYKGGIF---EGPCGT-KVDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGY 190

Query: 118 FKIERGNNA----CG 128
            +I+R        CG
Sbjct: 191 IRIKRAPGNSPGVCG 205

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A* Length = 216

 Score = 65.9 bits (162), Expect = 2e-13
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 18/89 (20%)

Query: 136 GSET-MKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVG 187
            +E  +   + K  P+SV + S    F       + G         C    + HAV  VG
Sbjct: 116 NNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFEGP--------CGT-KVDHAVTAVG 165

Query: 188 YGKQDDIPYWLVRNSWGPIGPDEGFFKIE 216
           YGK     Y L++NSWG    ++G+ +I+
Sbjct: 166 YGKSGGKGYILIKNSWGTAWGEKGYIRIK 194

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1 Length = 215

 Score = 89.5 bits (223), Expect = 3e-22
 Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 14/133 (10%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
           G++++++YPY    G    C   + +V    G   +  N    ++  +    P+SV + +
Sbjct: 80  GIDTQQNYPYSAVQG---SCKPYRLRVVSINGFQRVTRNNESALQSAVAS-QPVSVTVEA 135

Query: 62  DLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
                  Y+          C      H V++VGYG Q    YW+VRNSWG    ++G+  
Sbjct: 136 AGAPFQHYSSGIF---TGPCGT-AQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIW 191

Query: 120 IERGNNA----CG 128
           +ER   +    CG
Sbjct: 192 MERNVASSAGLCG 204

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1 Length = 215

 Score = 63.3 bits (155), Expect = 2e-12
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 16/76 (21%)

Query: 148 GPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVR 200
            P+SV + +    F       + G         C      H V++VGYG Q    YW+VR
Sbjct: 127 QPVSVTVEAAGAPFQHYSSGIFTGP--------CGT-AQNHGVVIVGYGTQSGKNYWIVR 177

Query: 201 NSWGPIGPDEGFFKIE 216
           NSWG    ++G+  +E
Sbjct: 178 NSWGQNWGNQGYIWME 193

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa} Length = 291

 Score = 90.7 bits (225), Expect = 5e-22
 Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 19/144 (13%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKS-------------KVKLFTGKDFLHFNGSET-MKK 47
           G+  EK++PY +   +     +                  + +   ++         +K 
Sbjct: 137 GVCPEKEWPYGDTPADPRTEEFPPGAPASKKPSDQCYKDAQNYKITEYSRVAQDIDHLKA 196

Query: 48  ILYKYGPLSV--LLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVR 105
            L    P      + +  + + +              + GHAVL VGY   D+I ++ +R
Sbjct: 197 CLAVGSPFVFGFSVYNSWVGNNSLPVRIPLPTKNDTLEGGHAVLCVGYD--DEIRHFRIR 254

Query: 106 NSWGPIGPDEGFFKIERG-NNACG 128
           NSWG    ++G+F +     +   
Sbjct: 255 NSWGNNVGEDGYFWMPYEYISNTQ 278

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa} Length = 291

 Score = 78.7 bits (194), Expect = 1e-17
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 4/80 (5%)

Query: 138 ETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIP 195
           + +K  L    P   G + +   +   +              + GHAVL VGY   D+I 
Sbjct: 192 DHLKACLAVGSPFVFGFSVYNSWVGNNSLPVRIPLPTKNDTLEGGHAVLCVGYD--DEIR 249

Query: 196 YWLVRNSWGPIGPDEGFFKI 215
           ++ +RNSWG    ++G+F +
Sbjct: 250 HFRIRNSWGNNVGEDGYFWM 269

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A* Length = 243

 Score = 88.4 bits (220), Expect = 2e-21
 Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 29/145 (20%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN- 60
           GL S+ DYPY +   E   C   +   +  T K ++     +  K+ L   GP+S+ +  
Sbjct: 99  GLCSQDDYPYVSNLPET--CNLKRCNERY-TIKSYVSIP-DDKFKEALRYLGPISISIAA 154

Query: 61  SDLIHDYNG---TPIRKNDETCSPYDLGHAVLLVGYG----------KQDDIPYWLVRNS 107
           SD    Y G            C      HAV+LVGYG          + +   Y++++NS
Sbjct: 155 SDDFAFYRGGFYDG------ECGA-APNHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNS 207

Query: 108 WGPIGPDEGFFKIERGNNA----CG 128
           WG    + G+  +E   N     C 
Sbjct: 208 WGSDWGEGGYINLETDENGYKKTCS 232

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A* Length = 243

 Score = 68.4 bits (168), Expect = 4e-14
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 21/91 (23%)

Query: 140 MKKILYKYGPLSVGLN-SHLIHFYNG---TPIRKNDETCSPYDLGHAVLLVGYG------ 189
            K+ L   GP+S+ +  S    FY G            C      HAV+LVGYG      
Sbjct: 138 FKEALRYLGPISISIAASDDFAFYRGGFYDG------ECGA-APNHAVILVGYGMKDIYN 190

Query: 190 ----KQDDIPYWLVRNSWGPIGPDEGFFKIE 216
               + +   Y++++NSWG    + G+  +E
Sbjct: 191 EDTGRMEKFYYYIIKNSWGSDWGEGGYINLE 221

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1 Length = 221

 Score = 87.6 bits (218), Expect = 2e-21
 Identities = 32/134 (23%), Positives = 62/134 (46%), Gaps = 15/134 (11%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKL-FTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
           G+ SE+ YPY+  +G    C    +   +     + +  +  ++++K +    P+SV ++
Sbjct: 82  GINSEETYPYRGQDG---ICNSTVNAPVVSIDSYENVPSHNEQSLQKAVAN-QPVSVTMD 137

Query: 61  SDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFF 118
           +       Y          +C+     HA+ +VGYG ++D  +W+V+NSWG    + G+ 
Sbjct: 138 AAGRDFQLYRSGIF---TGSCNI-SANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYI 193

Query: 119 KIERGNNA----CG 128
           + ER        CG
Sbjct: 194 RAERNIENPDGKCG 207

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1 Length = 221

 Score = 65.6 bits (161), Expect = 3e-13
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 16/88 (18%)

Query: 136 GSETMKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVGY 188
            +E   +      P+SV +++    F       + G+        C+     HA+ +VGY
Sbjct: 118 HNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGS--------CNI-SANHALTVVGY 168

Query: 189 GKQDDIPYWLVRNSWGPIGPDEGFFKIE 216
           G ++D  +W+V+NSWG    + G+ + E
Sbjct: 169 GTENDKDFWIVKNSWGKNWGESGYIRAE 196

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1 Length = 229

 Score = 86.8 bits (216), Expect = 5e-21
 Identities = 37/143 (25%), Positives = 60/143 (41%), Gaps = 31/143 (21%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
           G+ +E +YPY+  +G    C   K      +      +  N    + K +    P+SV +
Sbjct: 82  GITTEANYPYEAYDG---TCDVSKENAPAVSIDGHENVPENDENALLKAVAN-QPVSVAI 137

Query: 60  NSDLIHD---------YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDD-IPYWLVRNSWG 109
           ++              + G+        C   +L H V +VGYG   D   YW V+NSWG
Sbjct: 138 DAG--GSDFQFYSEGVFTGS--------CGT-ELDHGVAIVGYGTTIDGTKYWTVKNSWG 186

Query: 110 PIGPDEGFFKIERG----NNACG 128
           P   ++G+ ++ERG       CG
Sbjct: 187 PEWGEKGYIRMERGISDKEGLCG 209

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1 Length = 229

 Score = 61.0 bits (149), Expect = 1e-11
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 17/89 (19%)

Query: 136 GSETMKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVGY 188
             E          P+SV +++    F       + G+        C   +L H V +VGY
Sbjct: 119 NDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGS--------CGT-ELDHGVAIVGY 169

Query: 189 GKQDD-IPYWLVRNSWGPIGPDEGFFKIE 216
           G   D   YW V+NSWGP   ++G+ ++E
Sbjct: 170 GTTIDGTKYWTVKNSWGPEWGEKGYIRME 198

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A Length = 241

 Score = 86.5 bits (215), Expect = 9e-21
 Identities = 37/146 (25%), Positives = 58/146 (39%), Gaps = 31/146 (21%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSET-MKKILYKYGPLSVLLN 60
           G+  + DYPY +       C  D+   K        + +  +  +K+ L   GP+S+ + 
Sbjct: 97  GICPDGDYPYVSDAPNL--CNIDRCTEK---YGIKNYLSVPDNKLKEALRFLGPISISVA 151

Query: 61  -SDLIHDYNG---TPIRKNDETCSPYDLGHAVLLVGYG----------KQDDIPYWLVRN 106
            SD    Y              C    L HAV+LVG+G          K +   Y++++N
Sbjct: 152 VSDDFAFYKEGIFDG------ECGD-QLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKN 204

Query: 107 SWGPIGPDEGFFKIERGNNA----CG 128
           SWG    + GF  IE   +     CG
Sbjct: 205 SWGQQWGERGFINIETDESGLMRKCG 230

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A Length = 241

 Score = 66.1 bits (162), Expect = 2e-13
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 21/91 (23%)

Query: 140 MKKILYKYGPLSVGLN-SHLIHFYNG---TPIRKNDETCSPYDLGHAVLLVGYG------ 189
           +K+ L   GP+S+ +  S    FY              C    L HAV+LVG+G      
Sbjct: 136 LKEALRFLGPISISVAVSDDFAFYKEGIFDG------ECGD-QLNHAVMLVGFGMKEIVN 188

Query: 190 ----KQDDIPYWLVRNSWGPIGPDEGFFKIE 216
               K +   Y++++NSWG    + GF  IE
Sbjct: 189 PLTKKGEKHYYYIIKNSWGQQWGERGFINIE 219

>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia arguta} PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A Length = 220

 Score = 85.2 bits (212), Expect = 1e-20
 Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 29/141 (20%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
           G+ +E +YPY    G   +C  D  + K  +   +  + +N    ++  +    P+SV L
Sbjct: 82  GINTEANYPYTAEEG---QCNLDLQQEKYVSIDTYENVPYNNEWALQTAVAY-QPVSVAL 137

Query: 60  NSDLIHD---------YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGP 110
            +              + G         C    + HAV +VGYG +  I YW+V+NSWG 
Sbjct: 138 EAA--GYNFQHYSSGIFTG--------PCGT-AVDHAVTIVGYGTEGGIDYWIVKNSWGT 186

Query: 111 IGPDEGFFKIERG---NNACG 128
              +EG+ +I+R       CG
Sbjct: 187 TWGEEGYMRIQRNVGGVGQCG 207

>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia arguta} PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A Length = 220

 Score = 63.3 bits (155), Expect = 2e-12
 Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 6/71 (8%)

Query: 148 GPLSVGLN-SHLI-HFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGP 205
            P+SV L  +      Y+          C    + HAV +VGYG +  I YW+V+NSWG 
Sbjct: 131 QPVSVALEAAGYNFQHYSSGIF---TGPCGT-AVDHAVTIVGYGTEGGIDYWIVKNSWGT 186

Query: 206 IGPDEGFFKIE 216
              +EG+ +I+
Sbjct: 187 TWGEEGYMRIQ 197

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} Length = 213

 Score = 83.3 bits (207), Expect = 7e-20
 Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 20/135 (14%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
           G+   + YPY+       +C   ++K           +  N  + + + +    P+S+++
Sbjct: 79  GIHLRQYYPYEGVQR---QCRASQAKGPKVKTDGVGRVPRNNEQALIQRIAI-QPVSIVV 134

Query: 60  NSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF 117
            +      +Y G         C    + HAV  VGYG      Y L++NSWG    + G+
Sbjct: 135 EAKGRAFQNYRGGIF---AGPCGT-SIDHAVAAVGYGN----DYILIKNSWGTGWGEGGY 186

Query: 118 FKIERGNNA----CG 128
            +I+RG+      CG
Sbjct: 187 IRIKRGSGNPQGACG 201

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} Length = 213

 Score = 59.0 bits (144), Expect = 5e-11
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 20/76 (26%)

Query: 148 GPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVR 200
            P+S+ + +    F       + G         C    + HAV  VGYG      Y L++
Sbjct: 128 QPVSIVVEAKGRAFQNYRGGIFAGP--------CGT-SIDHAVAAVGYGN----DYILIK 174

Query: 201 NSWGPIGPDEGFFKIE 216
           NSWG    + G+ +I+
Sbjct: 175 NSWGTGWGEGGYIRIK 190

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E* Length = 218

 Score = 83.3 bits (207), Expect = 7e-20
 Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 16/135 (11%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
           G+ + K YPY+       KC              +  +  N   +    L    PLSVL+
Sbjct: 79  GVHTSKVYPYQAKQY---KCRATDKPGPKVKITGYKRVPSNCETSFLGALAN-QPLSVLV 134

Query: 60  NSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF 117
            +       Y        D  C    L HAV  VGYG  D   Y +++NSWGP   ++G+
Sbjct: 135 EAGGKPFQLYKSGVF---DGPCGT-KLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGY 190

Query: 118 FKIERGNNA----CG 128
            +++R +      CG
Sbjct: 191 MRLKRQSGNSQGTCG 205

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E* Length = 218

 Score = 63.3 bits (155), Expect = 2e-12
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 18/89 (20%)

Query: 136 GSET-MKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVG 187
             ET     L    PLSV + +    F       ++G         C    L HAV  VG
Sbjct: 116 NCETSFLGALAN-QPLSVLVEAGGKPFQLYKSGVFDGP--------CGT-KLDHAVTAVG 165

Query: 188 YGKQDDIPYWLVRNSWGPIGPDEGFFKIE 216
           YG  D   Y +++NSWGP   ++G+ +++
Sbjct: 166 YGTSDGKNYIIIKNSWGPNWGEKGYMRLK 194

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana} Length = 214

 Score = 83.3 bits (207), Expect = 8e-20
 Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 20/135 (14%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
           G+ +E++YPY+   G   +C     K        +  +  N   ++ + +    P+SV+ 
Sbjct: 79  GVHTEREYPYEKKQG---RCRAKDKKGPKVYITGYKYVPANDEISLIQAIAN-QPVSVVT 134

Query: 60  NSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF 117
           +S       Y G      +  C   +  HAV  VGYGK     Y L++NSWGP   ++G+
Sbjct: 135 DSRGRGFQFYKGGIY---EGPCGT-NTDHAVTAVGYGK----TYLLLKNSWGPNWGEKGY 186

Query: 118 FKIERG----NNACG 128
            +I+R        CG
Sbjct: 187 IRIKRASGRSKGTCG 201

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana} Length = 214

 Score = 59.4 bits (145), Expect = 5e-11
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 22/89 (24%)

Query: 136 GSET-MKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVG 187
             E  + + +    P+SV  +S    F       Y G         C   +  HAV  VG
Sbjct: 116 NDEISLIQAIAN-QPVSVVTDSRGRGFQFYKGGIYEGP--------CGT-NTDHAVTAVG 165

Query: 188 YGKQDDIPYWLVRNSWGPIGPDEGFFKIE 216
           YGK     Y L++NSWGP   ++G+ +I+
Sbjct: 166 YGK----TYLLLKNSWGPNWGEKGYIRIK 190

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1 Length = 322

 Score = 84.2 bits (209), Expect = 2e-19
 Identities = 33/142 (23%), Positives = 51/142 (35%), Gaps = 30/142 (21%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
           G+     YPYK   G    C   +    +        +  N    +   + K  P+SV++
Sbjct: 185 GIHLRSKYPYKAKQG---TCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAK-QPVSVVV 240

Query: 60  NSDLIHD---------YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGP 110
            S              + G         C    +  AV  VGYGK     Y L++NSWG 
Sbjct: 241 ESK--GRPFQLYKGGIFEG--------PCGT-KVDGAVTAVGYGKSGGKGYILIKNSWGT 289

Query: 111 IGPDEGFFKIERGNNA----CG 128
              ++G+ +I+R        CG
Sbjct: 290 AWGEKGYIRIKRAPGNSPGVCG 311

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1 Length = 322

 Score = 62.3 bits (152), Expect = 1e-11
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 16/76 (21%)

Query: 148 GPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVR 200
            P+SV + S    F       + G         C    +  AV  VGYGK     Y L++
Sbjct: 234 QPVSVVVESKGRPFQLYKGGIFEGP--------CGT-KVDGAVTAVGYGKSGGKGYILIK 284

Query: 201 NSWGPIGPDEGFFKIE 216
           NSWG    ++G+ +I+
Sbjct: 285 NSWGTAWGEKGYIRIK 300

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A* Length = 208

 Score = 81.9 bits (203), Expect = 2e-19
 Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 17/131 (12%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
           G++++ +YPYK   G    C      V +  G + + F  +E   K      P +V +++
Sbjct: 80  GIDTQANYPYKAVQG---PCQAASKVVSI-DGYNGVPFC-NEXALKQAVAVQPSTVAIDA 134

Query: 62  DL--IHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK 119
                  Y+               L H V +VGY       YW+VRNSWG    ++G+ +
Sbjct: 135 SSAQFQQYSSGIF----SGPCGTKLNHGVTIVGYQA----NYWIVRNSWGRYWGEKGYIR 186

Query: 120 IER--GNNACG 128
           + R  G   CG
Sbjct: 187 MLRVGGCGLCG 197

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A* Length = 208

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 10/83 (12%)

Query: 136 GSETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDD 193
            +E   K      P +V +++       Y+               L H V +VGY     
Sbjct: 114 CNEXALKQAVAVQPSTVAIDASSAQFQQYSSGIF----SGPCGTKLNHGVTIVGYQA--- 166

Query: 194 IPYWLVRNSWGPIGPDEGFFKIE 216
             YW+VRNSWG    ++G+ ++ 
Sbjct: 167 -NYWIVRNSWGRYWGEKGYIRML 188

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ... Length = 212

 Score = 81.3 bits (202), Expect = 4e-19
 Identities = 31/135 (22%), Positives = 47/135 (34%), Gaps = 20/135 (14%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF--LHFNGSETMKKILYKYGPLSVLL 59
           G+     YPY+        C   +             +       +   +    P+SV+L
Sbjct: 79  GIHYRNTYPYEGVQR---YCRSREKGPYAAKTDGVRQVQPYNEGALLYSIAN-QPVSVVL 134

Query: 60  NSDLI--HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF 117
            +       Y G         C    + HAV  VGYG      Y L++NSWG    + G+
Sbjct: 135 EAAGKDFQLYRGGIF---VGPCGN-KVDHAVAAVGYGP----NYILIKNSWGTGWGENGY 186

Query: 118 FKIERGNNA----CG 128
            +I+RG       CG
Sbjct: 187 IRIKRGTGNSYGVCG 201

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ... Length = 212

 Score = 59.0 bits (144), Expect = 5e-11
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 22/89 (24%)

Query: 136 GSET-MKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVG 187
            +E  +   +    P+SV L +    F       + G         C    + HAV  VG
Sbjct: 116 YNEGALLYSIAN-QPVSVVLEAAGKDFQLYRGGIFVGP--------CGN-KVDHAVAAVG 165

Query: 188 YGKQDDIPYWLVRNSWGPIGPDEGFFKIE 216
           YG      Y L++NSWG    + G+ +I+
Sbjct: 166 YGP----NYILIKNSWGTGWGENGYIRIK 190

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Length = 224

 Score = 81.4 bits (202), Expect = 5e-19
 Identities = 34/142 (23%), Positives = 55/142 (38%), Gaps = 30/142 (21%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKL-FTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
           G+ SE  YPY   +    +C     +  +   G   +       MK  L K  P+S+ + 
Sbjct: 88  GICSEDAYPYLARDE---ECRAQSCEKVVKILGFKDVPRRSEAAMKAALAK-SPVSIAIE 143

Query: 61  SDLIHD---------YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDD--IPYWLVRNSWG 109
           +D             ++         +C   DL H VLLVGYG   +    +W+++NSWG
Sbjct: 144 AD--QMPFQFYHEGVFDA--------SCGT-DLDHGVLLVGYGTDKESKKDFWIMKNSWG 192

Query: 110 PIGPDEGFFKIERG---NNACG 128
                +G+  +         CG
Sbjct: 193 TGWGRDGYMYMAMHKGEEGQCG 214

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Length = 224

 Score = 59.1 bits (144), Expect = 7e-11
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 18/78 (23%)

Query: 148 GPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDD--IPYWL 198
            P+S+ + +  + F       ++ +        C   DL H VLLVGYG   +    +W+
Sbjct: 136 SPVSIAIEADQMPFQFYHEGVFDAS--------CGT-DLDHGVLLVGYGTDKESKKDFWI 186

Query: 199 VRNSWGPIGPDEGFFKIE 216
           ++NSWG     +G+  + 
Sbjct: 187 MKNSWGTGWGRDGYMYMA 204

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} Length = 222

 Score = 80.3 bits (198), Expect = 1e-18
 Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 13/135 (9%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
           G+ S+ +YPY   +G    C  +K       G  + +   S +         P+SV + +
Sbjct: 80  GIASDANYPYTGVDG---TCDLNKPIAARIDG--YTNVPNSSSALLDAVAKQPVSVNIYT 134

Query: 62  DL--IHDYNGTPIRKNDE-TCSPYDLGHAVLLVGYGKQDD-IPYWLVRNSWGPIGPDEGF 117
                  Y G  I      +  P  + H VL+VGYG       YW+V+NSWG     +G+
Sbjct: 135 SSTSFQLYTGPGIFAGSSCSDDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGY 194

Query: 118 FKIERGNNA----CG 128
             I R  N     C 
Sbjct: 195 ILIRRNTNRPDGVCA 209

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} Length = 222

 Score = 60.6 bits (147), Expect = 2e-11
 Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 4/111 (3%)

Query: 110 PIGPDEGFFKIERGNNACGKDFLHFNGSETMKKILYKYGPLSVGLNS--HLIHFYNGTPI 167
           P    +G   + +   A    + +   S +         P+SV + +       Y G  I
Sbjct: 88  PYTGVDGTCDLNKPIAARIDGYTNVPNSSSALLDAVAKQPVSVNIYTSSTSFQLYTGPGI 147

Query: 168 RKNDE-TCSPYDLGHAVLLVGYGKQDD-IPYWLVRNSWGPIGPDEGFFKIE 216
                 +  P  + H VL+VGYG       YW+V+NSWG     +G+  I 
Sbjct: 148 FAGSSCSDDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILIR 198

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare} Length = 262

 Score = 80.0 bits (198), Expect = 3e-18
 Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 34/146 (23%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKL-----FTGKDFLHFNGSETMKKILYKYGPLS 56
           GL +E  YPY+ A G    C   ++           G   +  N  E + + +    P+S
Sbjct: 84  GLITEAAYPYRAARG---TCNVARAAQNSPVVVHIDGHQDVPANSEEDLARAVAN-QPVS 139

Query: 57  VLLNSDLIHD---------YNGTPIRKNDETCSPYDLGHAVLLVGYGKQDD-IPYWLVRN 106
           V + +              + G         C   +L H V +VGYG  +D   YW V+N
Sbjct: 140 VAVEAS--GKAFMFYSEGVFTGE--------CGT-ELDHGVAVVGYGVAEDGKAYWTVKN 188

Query: 107 SWGPIGPDEGFFKIERGNNA----CG 128
           SWGP   ++G+ ++E+ + A    CG
Sbjct: 189 SWGPSWGEQGYIRVEKDSGASGGLCG 214

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare} Length = 262

 Score = 61.5 bits (150), Expect = 1e-11
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 17/89 (19%)

Query: 136 GSETMKKILYKYGPLSVGLNSHLIHF-------YNGTPIRKNDETCSPYDLGHAVLLVGY 188
            SE          P+SV + +    F       + G         C   +L H V +VGY
Sbjct: 124 NSEEDLARAVANQPVSVAVEASGKAFMFYSEGVFTGE--------CGT-ELDHGVAVVGY 174

Query: 189 GKQDD-IPYWLVRNSWGPIGPDEGFFKIE 216
           G  +D   YW V+NSWGP   ++G+ ++E
Sbjct: 175 GVAEDGKAYWTVKNSWGPSWGEQGYIRVE 203

>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis} Length = 383

 Score = 38.7 bits (89), Expect = 9e-04
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 86  HAVLLVGYGK-QDDIPYWLVRNSWGPIGPDEGFFKI 120
           H + + G  K Q+   Y++V+NSWG      G +  
Sbjct: 318 HGMQIYGIAKDQEGNEYYMVKNSWGTNSKYNGIWYA 353

>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis} Length = 383

 Score = 38.7 bits (89), Expect = 9e-04
 Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 181 HAVLLVGYGK-QDDIPYWLVRNSWGPIGPDEGFFKI 215
           H + + G  K Q+   Y++V+NSWG      G +  
Sbjct: 318 HGMQIYGIAKDQEGNEYYMVKNSWGTNSKYNGIWYA 353

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	233
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	99.98
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	99.98
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	99.97
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	99.97
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	99.97
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	99.97
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	99.97
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	99.97
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	99.97
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	99.97
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	99.97
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	99.97
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	99.97
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	99.97
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	99.97
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	99.97
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	99.97
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	99.96
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	99.96
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	99.96
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	99.96
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	99.96
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	99.96
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	99.96
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	99.96
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	99.96
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	99.96
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	99.96
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	99.96
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	99.96
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	99.96
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	99.96
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	99.96
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	99.96
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	99.95
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	99.95
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	99.95
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	99.95
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	99.95
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	99.95
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	99.95
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	99.94
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	99.94
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	99.94
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	99.94
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	99.94
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	99.94
2wbf_X	265	Serine-repeat antigen protein; SERA, malaria, vacu	99.94
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	99.94
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	99.94
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	99.94
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	99.94
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	99.94
3tnx_A	363	Papain; hydrolase, cytoplasm for recombinant expre	99.94
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	99.94
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	99.94
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	99.93
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	99.93
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	99.93
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	99.93
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	99.93
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	99.93
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	99.93
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	99.93
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	99.93
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	99.93
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	99.93
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	99.93
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	99.93
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	99.92
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	99.92
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	99.92
3tnx_A	363	Papain; hydrolase, cytoplasm for recombinant expre	99.92
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	99.92
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	99.91
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	99.91
2wbf_X	265	Serine-repeat antigen protein; SERA, malaria, vacu	99.91
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	99.91
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	99.91
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	99.88
2e01_A	457	Cysteine proteinase 1; bleomycin hydrolase, thiol	99.8
2cb5_A	453	Protein (bleomycin hydrolase); aminopeptidase, cys	99.8
2e01_A	457	Cysteine proteinase 1; bleomycin hydrolase, thiol	99.67
2cb5_A	453	Protein (bleomycin hydrolase); aminopeptidase, cys	99.66
3pw3_A	383	Aminopeptidase C; bleomycin, cysteine proteinase f	99.55
3pw3_A	383	Aminopeptidase C; bleomycin, cysteine proteinase f	99.04
1pxv_A	183	Cysteine protease; hydrolase; 1.80A {Staphylococcu	81.24

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} SCOP: d.3.1.1 PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ...

Probab=99.98  E-value=3.5e-32  Score=225.74  Aligned_cols=127  Identities=27%  Similarity=0.558  Sum_probs=113.6

Q ss_pred             CCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC-CHHHHHHHHHhcCCEEEEEecCCCCCcCCceeeCCCCCCC
Q psy282            2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN-GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCS   80 (233)
Q Consensus         2 Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~-~~~~i~~~l~~~GPv~v~i~~~~f~~y~~Gi~~~~~~~c~   80 (233)
                      |+++|++|||....+..++|+.......+++.+ |..++ ++++||++|+++|||+++|++++|++|++|||..    |.
T Consensus        82 Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~-~~~v~~~~~~ik~~l~~~gPV~v~~~~~~f~~Y~~Giy~~----~~  156 (215)
T 3i06_A           82 AVYTEDSYPYASGEGISPPCTTSGHTVGATITG-HVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTS----CV  156 (215)
T ss_dssp             EEEC-CCSCCCCTTSCCCCCCCSSCCEEEEEEE-EEECCSCHHHHHHHHHHHCCEEEEECCTTGGGCCSSEECS----CC
T ss_pred             cccccCccCCcCCCCCCCccccCCcccceEecc-eEEeCChHHHHHHHHHHCCCEEEEEEchHHhcCCCCcccC----CC
Confidence            689999999997765445798777667789999 99998 9999999999999999999999999999999963    66


Q ss_pred             CCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccccccCccccc
Q psy282           81 PYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFLH  133 (233)
Q Consensus        81 ~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~~~Cgi~~~~  133 (233)
                      ...++|||+|||||++++.+|||||||||+.|||+||+|+.++.+.|++++.+
T Consensus       157 ~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~rg~n~cgi~~~~  209 (215)
T 3i06_A          157 SEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEA  209 (215)
T ss_dssp             CSCCCEEEEEEEEESSSSSCEEEEECSBCTTSTBTTEEEEESSSCGGGTTSSE
T ss_pred             CCccCcEEEEEEEeccCCcEEEEEECCCCCCcccCceEEEecCCCeecCCCce
Confidence            66789999999999999999999999999999999999999999999998754

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1

Probab=99.98  E-value=1.1e-32  Score=228.70  Aligned_cols=128  Identities=34%  Similarity=0.727  Sum_probs=115.2

Q ss_pred             CCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC-CHHHHHHHHHhcCCEEEEEecCCCCCcCCceeeCCCCCCC
Q psy282            2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN-GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCS   80 (233)
Q Consensus         2 Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~-~~~~i~~~l~~~GPv~v~i~~~~f~~y~~Gi~~~~~~~c~   80 (233)
                      ||++|++|||.+...   .|+....+..+++.+ +..++ ++++||++|+++|||+++|++..|++|++|||..+...|+
T Consensus        80 Gi~~e~~yPY~~~~~---~C~~~~~~~~~~i~~-~~~i~~~~~~ik~~l~~~GPV~v~i~~~~f~~Y~~Giy~~~~~~c~  155 (214)
T 1m6d_A           80 GLETEDDYSYQGHMQ---SCQFSAEKAKVYIQD-SVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCS  155 (214)
T ss_dssp             CBCBTTTSCCCSSCC---CCCCCGGGCCBCCSE-EEECCSCHHHHHHHHHHHCCEEEEECTHHHHHCCSSEECCCGGGSC
T ss_pred             CcccccCcCcCCCCC---cCCCCcccceEEecC-EEEeChHHHHHHHHHHhCCCEEEEEEechhhhcCCceecCCCCcCC
Confidence            899999999999888   898766666678888 88887 9999999999999999999997799999999986422487


Q ss_pred             CCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccccccCccccc
Q psy282           81 PYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFLH  133 (233)
Q Consensus        81 ~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~~~Cgi~~~~  133 (233)
                      ...++|||+|||||.+++.+|||+|||||+.|||+||+|+.++.+.|++++.+
T Consensus       156 ~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~n~Cgi~~~~  208 (214)
T 1m6d_A          156 PWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMA  208 (214)
T ss_dssp             TTCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSCGGGTTTTC
T ss_pred             CCcCCEEEEEEEEeecCCcEEEEEEeCCCCCcccCcEEEEEcCCCccccCcee
Confidence            77789999999999999999999999999999999999999998999997654

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ...

Probab=99.97  E-value=4e-32  Score=225.33  Aligned_cols=126  Identities=29%  Similarity=0.610  Sum_probs=116.8

Q ss_pred             CCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEecC--CCCCcCCceeeCCCC
Q psy282            2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDE   77 (233)
Q Consensus         2 Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~~--~f~~y~~Gi~~~~~~   77 (233)
                      ||++|++|||.+.++   .|+..+.....++.+ |..++  ++++||++|+++|||+++|++.  +|+.|++|||..+  
T Consensus        80 Gi~~e~~yPY~~~~~---~C~~~~~~~~~~i~~-~~~v~~~~~~~ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~~~--  153 (215)
T 3kwz_A           80 GIDSEDAYPYVGQEE---SCMYNPTGKAAKCRG-YREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDE--  153 (215)
T ss_dssp             CEEBTTTSCCCSSCC---CCCCCGGGEEECCCC-EEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECCT--
T ss_pred             CccccccCCCccCCC---ccccCCCCceeEecc-eEEeCCCCHHHHHHHHHHCCCEEEEEeechhhhhcccCCeECCC--
Confidence            899999999999988   899877778889999 99998  8999999999999999999995  8999999999887  


Q ss_pred             CCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccc-cccCccccc
Q psy282           78 TCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGKDFLH  133 (233)
Q Consensus        78 ~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~-~~Cgi~~~~  133 (233)
                      .|+...++|||+|||||.+++.+|||+|||||+.|||+||+|+.++. +.|++++.+
T Consensus       154 ~~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WG~~Gy~~i~r~~~n~Cgi~~~~  210 (215)
T 3kwz_A          154 SCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLA  210 (215)
T ss_dssp             TCCTTCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSSSGGGTTSSC
T ss_pred             CCCCChhhCEEEEEEEeccCCceEEEEECCcCcccccCCEEEEecCCCCccCcCCce
Confidence            58777899999999999999999999999999999999999999986 899998754

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor}

Probab=99.97  E-value=3.7e-32  Score=238.49  Aligned_cols=127  Identities=28%  Similarity=0.628  Sum_probs=117.8

Q ss_pred             CCCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEecC-CCCCcCCceeeCCCC
Q psy282            1 MGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD-LIHDYNGTPIRKNDE   77 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~~-~f~~y~~Gi~~~~~~   77 (233)
                      +||++|++|||.+.++   .|+..+....++|.+ |..++  ++++||++|+++|||+|+|++. +|++|++|||..+  
T Consensus       194 ~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~i~~-~~~v~~~~e~~lk~al~~~GPV~v~i~a~~~f~~Y~~GVy~~~--  267 (329)
T 3qt4_A          194 YGIMSESAYPYEAQGD---YCRFDSSQSVTTLSG-YYDLPSGDENSLADAVGQAGPVAVAIDATDELQFYSGGLFYDQ--  267 (329)
T ss_dssp             SCBCBTTTSCCCSSCC---CCCCCGGGCCBCCSE-EEECCTTCHHHHHHHHHHTCCEEEEECCCGGGTTEEEEEECCS--
T ss_pred             cCCCcHHHeeeecCCC---CCCCCcccceEEece-EEEecCCCHHHHHHHHHhCCCEEEEEecChhhhhccCceeecC--
Confidence            4899999999999988   899877777789999 99997  8999999999999999999996 9999999999987  


Q ss_pred             CCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccc-cccCccccc
Q psy282           78 TCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGKDFLH  133 (233)
Q Consensus        78 ~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~-~~Cgi~~~~  133 (233)
                      .|+...++|||+|||||++++.+|||||||||+.||++||+|+.++. +.|+|.+.+
T Consensus       268 ~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~  324 (329)
T 3qt4_A          268 TCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGYWRQVRNYGNNCGIATAA  324 (329)
T ss_dssp             SCCSSCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSSSGGGTTTTC
T ss_pred             CCCCCcCCEEEEEEEEEeeCCccEEEEEeCCCCcccCCcEEEEEeCCCCccCCCCce
Confidence            58777899999999999999999999999999999999999999997 999998754

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A*

Probab=99.97  E-value=4.8e-32  Score=225.55  Aligned_cols=127  Identities=34%  Similarity=0.684  Sum_probs=116.3

Q ss_pred             CCCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEecC-CCCCcCCceeeCCCC
Q psy282            1 MGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD-LIHDYNGTPIRKNDE   77 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~~-~f~~y~~Gi~~~~~~   77 (233)
                      .||++|++|||.+..+   .|+..+.....++.+ |..++  ++++||++|+++|||+++|++. +|+.|++|||..+  
T Consensus        82 ~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~i~~-~~~v~~~~~~~ik~~l~~~gPV~~~~~~~~~f~~Y~~Giy~~~--  155 (220)
T 8pch_A           82 KGIMGEDTYPYKGQDD---HCKFQPDKAIAFVKD-VANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSST--  155 (220)
T ss_dssp             TCEEBTTTSCCCSSCC---CCCCCGGGEEECEEE-EEECCTTCHHHHHHHHHHTCCEEEEECCCHHHHTCCSSEECCS--
T ss_pred             CCcCcccccCccCCCC---CCCCCCCcceEEeCC-EEEeCCCCHHHHHHHHHhcCCEEEEEEeccchhhcCCCcccCC--
Confidence            3899999999999888   899877777888999 99887  8999999999999999999996 8999999999887  


Q ss_pred             CCCCC--CCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccccccCccccc
Q psy282           78 TCSPY--DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFLH  133 (233)
Q Consensus        78 ~c~~~--~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~~~Cgi~~~~  133 (233)
                      .|...  .++|||+|||||++++.+|||||||||+.|||+||+|+.++.+.|++++.+
T Consensus       156 ~~~~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~n~cgi~~~~  213 (220)
T 8pch_A          156 SCHKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACA  213 (220)
T ss_dssp             SCCCSTTTCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTSC
T ss_pred             cCCCCCCcCCcEEEEEEEEccCCeeEEEEECCCCcCcccCCEEEEEcCCCccccCCCc
Confidence            47544  789999999999999999999999999999999999999999999998754

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ...

Probab=99.97  E-value=8.3e-32  Score=224.21  Aligned_cols=127  Identities=31%  Similarity=0.603  Sum_probs=115.4

Q ss_pred             CCCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC-CHHHHHHHHHhcCCEEEEEecC--CCCCcCCceeeCCCC
Q psy282            1 MGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN-GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDE   77 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~-~~~~i~~~l~~~GPv~v~i~~~--~f~~y~~Gi~~~~~~   77 (233)
                      +||++|++|||.+.++   .|+..+....+++++ |..++ ++++||++|+++|||+++|++.  +|++|++|||..+  
T Consensus        81 ~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~i~~-~~~v~~~~~~ik~~l~~~GPV~v~~~~~~~~f~~Y~~Gvy~~~--  154 (220)
T 2xu3_A           81 GGLDSEESYPYEATEE---SCKYNPKYSVANDTG-FVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEP--  154 (220)
T ss_dssp             TCEEBTTTSCCCSSCC---CCCCCGGGEEECCSE-EEECCSCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECCT--
T ss_pred             CCcccccccCCcccCc---CccCCCCCcceeeee-EEEeCCCHHHHHHHHHhcCCEEEEEeecCcccccccceEEcCC--
Confidence            4899999999999888   898776667789999 99998 8999999999999999999995  7999999999887  


Q ss_pred             CCCCCCCCcEEEEEeee----ccCCccEEEEecCCCCCCCCCcceeeeccc-cccCccccc
Q psy282           78 TCSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGKDFLH  133 (233)
Q Consensus        78 ~c~~~~~~H~v~ivG~g----~~~~~~ywivknswg~~wge~gy~~~~~~~-~~Cgi~~~~  133 (233)
                      .|+...++|||+|||||    .+++.+|||+|||||+.|||+||+|+.++. +.|++++.+
T Consensus       155 ~c~~~~~~HaV~iVGygd~~~~~~g~~yWivkNSWG~~WG~~Gy~~i~~~~~n~Cgi~~~~  215 (220)
T 2xu3_A          155 DCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAA  215 (220)
T ss_dssp             TCCSSCCCEEEEEEEEEECCCSSSCCEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSC
T ss_pred             CCCCCCCCeEEEEEEcCCccccCCCCcEEEEEeCCCCCcccCcEEEEecCCCCcCCccccc
Confidence            58777789999999999    778999999999999999999999999986 889997654

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica}

Probab=99.97  E-value=6.7e-32  Score=235.38  Aligned_cols=127  Identities=34%  Similarity=0.667  Sum_probs=116.0

Q ss_pred             CCCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEecC-CCCCcCCceeeCCCC
Q psy282            1 MGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD-LIHDYNGTPIRKNDE   77 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~~-~f~~y~~Gi~~~~~~   77 (233)
                      .||++|++|||.+.++   .|+.++....++|.+ |..|+  ++++||++|+++|||+|+|++. +|++|++|||..+  
T Consensus       171 ~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~i~~-~~~v~~~~~~~i~~~l~~~GPV~v~i~~~~~f~~Y~~Gvy~~~--  244 (310)
T 2o6x_A          171 FGLETESSYPYTAVEG---QCRYNKQLGVAKVTG-FYTVHSGSEVELKNLVGAEGPAAVAVDVESDFMMYRSGIYQSQ--  244 (310)
T ss_dssp             SCBCBTTTSCCCSSCC---CCCCCGGGCCEEEEE-EEEECSCCHHHHHHHHHHHCCEEEEECCCHHHHTEEEEEECCS--
T ss_pred             CCcCchhcCCCCCCCC---CccCCCCCCceEeCe-EEEeCCCCHHHHHHHHHhcCCeEEEEecchhhhhCCCceecCC--
Confidence            4899999999999888   899766666789999 99997  8999999999999999999996 8999999999876  


Q ss_pred             CCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccc-cccCccccc
Q psy282           78 TCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGKDFLH  133 (233)
Q Consensus        78 ~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~-~~Cgi~~~~  133 (233)
                      .|+...++|||+|||||.+++.+|||||||||+.||++||+|+.++. +.|+|.+.+
T Consensus       245 ~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~Cgi~~~~  301 (310)
T 2o6x_A          245 TCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIASLA  301 (310)
T ss_dssp             SCCTTCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSE
T ss_pred             CCCCCCCCEEEEEEEEeccCCceEEEEEeCCCCccCCCcEEEEEcCCCCcCCcccee
Confidence            58777789999999999999999999999999999999999999986 899997654

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0

Probab=99.97  E-value=9.8e-32  Score=236.13  Aligned_cols=126  Identities=35%  Similarity=0.719  Sum_probs=117.6

Q ss_pred             CCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEecC-CCCCcCCceeeCCCCC
Q psy282            2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD-LIHDYNGTPIRKNDET   78 (233)
Q Consensus         2 Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~~-~f~~y~~Gi~~~~~~~   78 (233)
                      ||++|++|||.+.++   .|+..+....+++.+ |..++  ++++||++|+++|||+|+|++. .|++|++|||..+  .
T Consensus       197 Gi~~e~~yPY~~~~~---~C~~~~~~~~~~i~~-~~~v~~~~e~~lk~al~~~GPV~v~i~a~~~f~~Y~~Gvy~~~--~  270 (331)
T 3qj3_A          197 GIDSEGAYPYEMADG---NCHYDPNQVAARLSG-YVYLSGPDENMLADMVATKGPVAVAFDADDPFGSYSGGVYYNP--T  270 (331)
T ss_dssp             CEEBTTTSCCCSSCC---CCCCCTTSEEECCSE-EEEESSCCHHHHHHHHHHHCCEEEEECCCTTGGGEEEEEECCT--T
T ss_pred             CcCcccccCccCCCC---CCCCCcccceeEeeE-EEEeCCCCHHHHHHHHHhCCCEEEEEEcccccccccCceEeCC--C
Confidence            899999999999988   999888888899999 99997  8999999999999999999995 6999999999987  5


Q ss_pred             CCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccc-cccCccccc
Q psy282           79 CSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGKDFLH  133 (233)
Q Consensus        79 c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~-~~Cgi~~~~  133 (233)
                      |+...++|||+|||||++++.+|||||||||+.||++||+|+.++. +.|+|.+.+
T Consensus       271 c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~  326 (331)
T 3qj3_A          271 CETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIARNANNHCGIAGVA  326 (331)
T ss_dssp             CCSSCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSC
T ss_pred             CCCCcCCEEEEEEEEeccCCceEEEEEcCCCCCcCCCCEEEEEcCCCCccCcCCce
Confidence            8777899999999999999999999999999999999999999997 999998754

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} SCOP: d.3.1.1 PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ...

Probab=99.97  E-value=1.3e-31  Score=222.73  Aligned_cols=126  Identities=31%  Similarity=0.652  Sum_probs=115.6

Q ss_pred             CCCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEecC--CCCCcCCceeeCCC
Q psy282            1 MGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKND   76 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~~--~f~~y~~Gi~~~~~   76 (233)
                      .|+++|++|||++.++   .|+........++.+ |..++  ++++||++|+++|||+++|++.  +|++|++|||..+ 
T Consensus        83 ~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~i~~-~~~~~~~~~~~ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~~~-  157 (218)
T 3ovx_A           83 KGIDSDASYPYKAMDQ---KCQYDSKYRAATCSK-YTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEP-  157 (218)
T ss_dssp             TCEEBTTTSCCCSSCC---CCCCCGGGEEECCCE-EEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHHCCSSEECCT-
T ss_pred             CCcCcccccCccCCCC---cccCCCccceeeecc-EEEeCCCCHHHHHHHHHhcCCEEEEEEecchhhhcccCceecCC-
Confidence            4899999999999988   899877778889999 99987  8999999999999999999995  7999999999987 


Q ss_pred             CCCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccc-cccCccccc
Q psy282           77 ETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGKDFLH  133 (233)
Q Consensus        77 ~~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~-~~Cgi~~~~  133 (233)
                       .| ...++|||+|||||.+++.+|||+|||||+.|||+||+|+.++. +.|++++.+
T Consensus       158 -~~-~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~n~cgi~~~~  213 (218)
T 3ovx_A          158 -SC-TQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFP  213 (218)
T ss_dssp             -TC-CSCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSC
T ss_pred             -CC-CcccCcEEEEEEEeccCCceEEEEECCCCCccccCCEEEEecCCCCcccccCce
Confidence             57 56789999999999999999999999999999999999999987 999998754

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A

Probab=99.97  E-value=1.4e-31  Score=233.75  Aligned_cols=127  Identities=29%  Similarity=0.600  Sum_probs=115.6

Q ss_pred             CCCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEecC--CCCCcCCceeeCCC
Q psy282            1 MGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKND   76 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~~--~f~~y~~Gi~~~~~   76 (233)
                      .||++|++|||.+.++   .|+..+....++|.+ |..++  ++++||++|+++|||+|+|++.  +|++|++|||..+ 
T Consensus       178 ~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~i~~-~~~v~~~~~~~i~~al~~~GPV~v~i~~~~~~f~~Y~~Gvy~~~-  252 (314)
T 1by8_A          178 RGIDSEDAYPYVGQEE---SCMYNPTGKAAKCRG-YREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDE-  252 (314)
T ss_dssp             TCBCBTTTSCCCSSCC---CCCCCGGGCCBCCSC-EEECCSSCHHHHHHHHHHHCCEEEEECCCSHHHHTEEEECBCCT-
T ss_pred             CCcCcHhhCCCCCCCC---CcCCCCccceeEECc-EEEecCCCHHHHHHHHHHcCCEEEEEEeChHHhhhccCceecCC-
Confidence            4999999999999988   898766556788999 99997  8999999999999999999995  8999999999887 


Q ss_pred             CCCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccc-cccCccccc
Q psy282           77 ETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGKDFLH  133 (233)
Q Consensus        77 ~~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~-~~Cgi~~~~  133 (233)
                       .|+...++|||+|||||.+++.+|||||||||+.||++||+|+.++. +.|+|.+.+
T Consensus       253 -~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~  309 (314)
T 1by8_A          253 -SCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLA  309 (314)
T ss_dssp             -TCCSSCCCEEEEEEEEEEETTEEEEEEECSBTTTSTBTTEEEECCSSSCGGGTTSSC
T ss_pred             -CCCCCCCCeEEEEEEEeccCCceEEEEEcCCCCCcCcCCEEEEEcCCCCcCCccCee
Confidence             58776789999999999999999999999999999999999999984 899997654

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A*

Probab=99.97  E-value=3.8e-31  Score=223.71  Aligned_cols=126  Identities=33%  Similarity=0.680  Sum_probs=113.3

Q ss_pred             CCCCCCCCCCCCCCCCccccccCCCceeEEeCCce---EEeC--CHHHHHHHHHh---cCCEEEEEecCCCCCcCCceee
Q psy282            2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDF---LHFN--GSETMKKILYK---YGPLSVLLNSDLIHDYNGTPIR   73 (233)
Q Consensus         2 Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~---~~v~--~~~~i~~~l~~---~GPv~v~i~~~~f~~y~~Gi~~   73 (233)
                      ||++|++|||.+.++   .|+.......+++++ |   ..++  ++++||++|++   +|||+++|++++|++|++|||.
T Consensus        81 Gi~~e~~yPY~~~~~---~C~~~~~~~~~~i~~-y~~~~~v~~~~~~~ik~~l~~~~~~GPV~v~i~~~~f~~Y~~Giy~  156 (246)
T 2b1m_A           81 GIASEADYPYKARDG---KCKANEIQDKVTIDN-YGVQILSNESTESEAESSLQSFVLEQPISVSIDAKDFHFYSGGIYD  156 (246)
T ss_dssp             CBCBTTTSCCCSSCC---CCCGGGCCCCBCCSE-EEEEECCTTSCHHHHHHHHHHHHHHSCEEEEECCTTGGGCCSSEEC
T ss_pred             CcCccccccccCCCC---cCcCCCCCCceeEcC-cceeeecCCChHHHHHHHHHhhccCCCEEEEEEcchhhcccceeec
Confidence            999999999999888   898765556678888 8   7776  89999999999   6999999999889999999998


Q ss_pred             CCCCCCCCCC-CCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccc----cccCccccc
Q psy282           74 KNDETCSPYD-LGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN----NACGKDFLH  133 (233)
Q Consensus        74 ~~~~~c~~~~-~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~----~~Cgi~~~~  133 (233)
                      .+  .|+... ++|||+|||||.+++.+|||+|||||+.|||+||+|+.++.    +.|++.+.+
T Consensus       157 ~~--~c~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~n~CgI~~~~  219 (246)
T 2b1m_A          157 GG--NCSSPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFA  219 (246)
T ss_dssp             CT--TCCSSCCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECCSSCTTCGGGTTSEE
T ss_pred             CC--CCCCCCcCceEEEEEEEeccCCceEEEEEeCCCCcccCCcEEEEEcCCCCCCcccccccee
Confidence            86  487654 89999999999999999999999999999999999999987    899997654

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens}

Probab=99.97  E-value=2.1e-31  Score=232.67  Aligned_cols=126  Identities=31%  Similarity=0.660  Sum_probs=115.1

Q ss_pred             CCCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEecC--CCCCcCCceeeCCC
Q psy282            1 MGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKND   76 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~~--~f~~y~~Gi~~~~~   76 (233)
                      .||++|++|||.+.++   .|+..+....++|.+ |..++  ++++||++|+++|||+|+|++.  +|++|++|||..+ 
T Consensus       180 ~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~i~~-~~~v~~~~~~~i~~al~~~GPV~v~i~~~~~~f~~Y~~Gvy~~~-  254 (315)
T 2c0y_A          180 KGIDSDASYPYKAMDQ---KCQYDSKYRAATCSK-YTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEP-  254 (315)
T ss_dssp             TCEEBTTTSCCCSSCC---CCCCCGGGEEECCCE-EEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTEEEEEECCT-
T ss_pred             CCcCchhcCCCccCCC---CcccCCcccccccCC-eEEeCCCCHHHHHHHHHHcCCEEEEEecCchhhhccCCCcccCC-
Confidence            4899999999999988   999776667788999 99997  8999999999999999999995  7999999999987 


Q ss_pred             CCCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccc-cccCccccc
Q psy282           77 ETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGKDFLH  133 (233)
Q Consensus        77 ~~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~-~~Cgi~~~~  133 (233)
                       .|+. .++|||+|||||.+++.+|||||||||+.||++||+|+.++. +.|+|.+.+
T Consensus       255 -~c~~-~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~  310 (315)
T 2c0y_A          255 -SCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFP  310 (315)
T ss_dssp             -TCCS-CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSC
T ss_pred             -CCCC-cCCEEEEEEEEeecCCCcEEEEEcCCCCCcCCCcEEEEEcCCCCccCcCcee
Confidence             5876 789999999999999999999999999999999999999984 899997654

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A*

Probab=99.97  E-value=2.5e-31  Score=232.27  Aligned_cols=127  Identities=31%  Similarity=0.608  Sum_probs=116.0

Q ss_pred             CCCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC-CHHHHHHHHHhcCCEEEEEecC--CCCCcCCceeeCCCC
Q psy282            1 MGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN-GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDE   77 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~-~~~~i~~~l~~~GPv~v~i~~~--~f~~y~~Gi~~~~~~   77 (233)
                      .||++|++|||.+.++   .|+..+....+++.+ |..|+ ++++||++|+++|||+|+|++.  +|++|++|||..+  
T Consensus       177 ~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~i~~-~~~v~~~~~~ik~~l~~~GPV~v~i~~~~~~f~~Y~~Gvy~~~--  250 (316)
T 1cs8_A          177 GGLDSEESYPYEATEE---SCKYNPKYSVANDAG-FVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEP--  250 (316)
T ss_dssp             TCEEBTTTSCCCSSCC---CCCCCGGGEEECCCC-EEECCSCHHHHHHHHHHHCCEEEEECCCSHHHHTEEEEEECCT--
T ss_pred             CCcCchhccCCCCCCC---CcCCCCccceeEecc-EEEeCCCHHHHHHHHHhcCCEEEEEecCChhhccccCceECCC--
Confidence            4899999999999988   899776667889999 99998 8999999999999999999995  7999999999887  


Q ss_pred             CCCCCCCCcEEEEEeee---cc-CCccEEEEecCCCCCCCCCcceeeeccc-cccCccccc
Q psy282           78 TCSPYDLGHAVLLVGYG---KQ-DDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGKDFLH  133 (233)
Q Consensus        78 ~c~~~~~~H~v~ivG~g---~~-~~~~ywivknswg~~wge~gy~~~~~~~-~~Cgi~~~~  133 (233)
                      .|+...++|||+|||||   .+ ++.+|||||||||+.||++||+|+.++. +.|+|.+.+
T Consensus       251 ~c~~~~~~HaV~iVGygd~~~~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~  311 (316)
T 1cs8_A          251 DCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAA  311 (316)
T ss_dssp             TCCSSCCCEEEEEEEEEEECCSSCCEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSC
T ss_pred             CCCCCCCCEEEEEEEecCCcccCCCCcEEEEEcCCCCCcccCCEEEEECCCCCccCcccee
Confidence            58777789999999999   77 8999999999999999999999999986 899997654

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1

Probab=99.97  E-value=4e-31  Score=230.44  Aligned_cols=126  Identities=20%  Similarity=0.401  Sum_probs=114.4

Q ss_pred             CCCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC--CHHHHHHHHHh-cCCEEEEEecC---CCCCcCCceeeC
Q psy282            1 MGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYK-YGPLSVLLNSD---LIHDYNGTPIRK   74 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~--~~~~i~~~l~~-~GPv~v~i~~~---~f~~y~~Gi~~~   74 (233)
                      .||++|++|||.+.++   .|+ ++....++|++ |..|+  ++++||++|++ +|||+|+|++.   +|++|++|||..
T Consensus       166 ~Gi~~e~~yPY~~~~~---~C~-~~~~~~~~i~~-y~~v~~~~~~~ik~al~~~~GPV~v~i~~~~~~~f~~Y~~GVy~~  240 (312)
T 1xkg_A          166 NGVVQESYYRYVAREQ---SCR-RPNAQRFGISN-YCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQ  240 (312)
T ss_dssp             HCEEBGGGSCCCSSCC---CCC-CCSSCEECCSE-EEECCSCCHHHHHHHHHHHCCCEEEEEEESCHHHHHTCCSSSCBC
T ss_pred             cCCCccccCCccCCCC---CCC-CCCCceEEEee-EEEeCCCCHHHHHHHHHhcCCCEEEEEEecccccccccCCcEEcC
Confidence            3899999999999888   899 66556789999 99997  89999999999 99999999994   799999999998


Q ss_pred             CCCCCC-CCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccccccCcccccc
Q psy282           75 NDETCS-PYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFLHF  134 (233)
Q Consensus        75 ~~~~c~-~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~~~Cgi~~~~~  134 (233)
                      +  .|+ ... +|||+|||||.+++.+|||||||||+.||++||+|+.++.+.|+|.+.+.
T Consensus       241 ~--~c~~~~~-~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~n~CgI~~~~~  298 (312)
T 1xkg_A          241 R--DNGYQPN-YHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPY  298 (312)
T ss_dssp             C--CCSSCCE-EEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTCCE
T ss_pred             C--CCCCCcC-ceEEEEEEEeccCCceEEEEEeCCCCcccCCcEEEEEcCCCcccccceeE
Confidence            7  587 556 99999999999999999999999999999999999999889999987543

>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein, hydrola protease, secreted, thiol protease; HET: P6G; 1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A 3rvw_A* 3rvx_A 3rvv_A* 3d6s_A*

Probab=99.97  E-value=4.9e-31  Score=219.77  Aligned_cols=126  Identities=20%  Similarity=0.368  Sum_probs=113.8

Q ss_pred             CCCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC--CHHHHHHHHHh-cCCEEEEEecC---CCCCcCCceeeC
Q psy282            1 MGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYK-YGPLSVLLNSD---LIHDYNGTPIRK   74 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~--~~~~i~~~l~~-~GPv~v~i~~~---~f~~y~~Gi~~~   74 (233)
                      +||++|++|||.+..+   .|+ .+....+++.+ |..++  ++++||++|++ +|||+++|++.   +|++|++||+..
T Consensus        86 ~Gi~~e~~yPY~~~~~---~C~-~~~~~~~~i~~-~~~v~~~~~~~ik~~l~~~~gpV~v~~~~~~~~~f~~Y~~gi~~~  160 (222)
T 3f5v_A           86 NGVVQESYYRYVAREQ---SCR-RPNAQRFGISN-YCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQ  160 (222)
T ss_dssp             HCEEBGGGSCCCSSCC---CCC-CCSSCEECCSE-EEECCSCCHHHHHHHHHHHCCCEEEEEEESCHHHHHTCCSSSCBC
T ss_pred             cCCCchhhCCCcccCC---Ccc-CCcCcceeecc-EEEeCCCCHHHHHHHHHhcCCCEEEEEEeccchhhhccCCCceec
Confidence            4899999999999888   898 56667889999 99985  99999999999 89999999983   799999998876


Q ss_pred             CCCCCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccccccCccccc
Q psy282           75 NDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFLH  133 (233)
Q Consensus        75 ~~~~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~~~Cgi~~~~  133 (233)
                      .  .|....++|||+|||||.+++.+|||||||||+.|||+||+|+.++++.|++++.+
T Consensus       161 ~--~~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~r~~n~cgi~~~~  217 (222)
T 3f5v_A          161 R--DNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYP  217 (222)
T ss_dssp             C--CCSSSCEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTSC
T ss_pred             C--CCCCCccCcEEEEEEEeccCCCEEEEEEcCCCCCcccCCEEEEEcCCCeecCCCce
Confidence            5  46667789999999999999999999999999999999999999999999998754

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1

Probab=99.97  E-value=1.8e-30  Score=216.31  Aligned_cols=123  Identities=26%  Similarity=0.607  Sum_probs=110.2

Q ss_pred             CCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEecC--CCCCcCCceeeCCCC
Q psy282            2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDE   77 (233)
Q Consensus         2 Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~~--~f~~y~~Gi~~~~~~   77 (233)
                      ||++|++|||.+.++   .|+.......++|++ |..++  ++++||++|++ |||+++|++.  +|++|++|||..+  
T Consensus        82 Gi~~e~~yPY~~~~~---~C~~~~~~~~~~i~~-y~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~~~--  154 (221)
T 1cqd_A           82 GINSEETYPYRGQDG---ICNSTVNAPVVSIDS-YENVPSHNEQSLQKAVAN-QPVSVTMDAAGRDFQLYRSGIFTGS--  154 (221)
T ss_dssp             SBCBTTTSCCCSSCC---CCCSSSCCCSBCCSE-EEECCSSCHHHHHHHHTT-SCEEEEECCCSHHHHTCCSSEECCC--
T ss_pred             CccccccCCccCCCC---CcCCCCCCceEEecc-EEEeCCchHHHHHHHHHh-CCEEEEEeccCcccccccCccccCC--
Confidence            899999999999888   898766666788999 98887  79999999986 9999999995  8999999999874  


Q ss_pred             CCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeecc----ccccCccccc
Q psy282           78 TCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG----NNACGKDFLH  133 (233)
Q Consensus        78 ~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~----~~~Cgi~~~~  133 (233)
                       |+. .++|||+|||||.+++.+|||||||||+.|||+||+|+.++    .+.|++.+.+
T Consensus       155 -~~~-~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~  212 (221)
T 1cqd_A          155 -CNI-SANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFA  212 (221)
T ss_dssp             -CCC-CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSC
T ss_pred             -CCC-cCCeEEEEEEEcccCCCcEEEEEeCCCCCcccCCEEEEEcCCCCCCcccceeeee
Confidence             765 58999999999999999999999999999999999999997    3789997654

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1

Probab=99.97  E-value=3.1e-30  Score=214.07  Aligned_cols=123  Identities=27%  Similarity=0.586  Sum_probs=109.3

Q ss_pred             CCCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEecC--CCCCcCCceeeCCC
Q psy282            1 MGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKND   76 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~~--~f~~y~~Gi~~~~~   76 (233)
                      .||++|++|||.+.++   .|+... ...+++.+ |..++  ++++||++|++ |||+++|++.  +|+.|++|||..+ 
T Consensus        79 ~Gi~~e~~yPY~~~~~---~C~~~~-~~~~~i~~-~~~v~~~~~~~ik~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~~~-  151 (215)
T 1iwd_A           79 GGIDTQQNYPYSAVQG---SCKPYR-LRVVSING-FQRVTRNNESALQSAVAS-QPVSVTVEAAGAPFQHYSSGIFTGP-  151 (215)
T ss_dssp             TCBCBTTTSCCCSSCC---CCCTTC-CCCBCCCE-EEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECCC-
T ss_pred             CCcccccccCccCCCC---CCCCCC-CceEEeCc-EEEeCCCcHHHHHHHHHh-CCEEEEEecCCcchhhcCCceECCC-
Confidence            3999999999999888   898655 35678888 98887  79999999987 9999999994  6999999999875 


Q ss_pred             CCCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccc----cccCccccc
Q psy282           77 ETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN----NACGKDFLH  133 (233)
Q Consensus        77 ~~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~----~~Cgi~~~~  133 (233)
                        |+. .++|||+|||||.+++.+|||+|||||+.|||+||+|+.++.    +.|++.+.+
T Consensus       152 --c~~-~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~  209 (215)
T 1iwd_A          152 --CGT-AQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLP  209 (215)
T ss_dssp             --CCC-CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSC
T ss_pred             --CCC-cCCEEEEEEEEeccCCccEEEEEeCCCCCcCCCcEEEEEcCCCCCCCCCCccccc
Confidence              764 679999999999999999999999999999999999999986    789997654

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A*

Probab=99.96  E-value=2.5e-30  Score=214.71  Aligned_cols=124  Identities=28%  Similarity=0.527  Sum_probs=109.4

Q ss_pred             CCCCCCCCCCCCCCCCCccccccCCC-ceeEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEecC--CCCCcCCceeeCC
Q psy282            1 MGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKN   75 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~C~~~~~-~~~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~~--~f~~y~~Gi~~~~   75 (233)
                      +||++|++|||.+.++   .|+.... ...+++++ |..++  ++++||++|++ |||+++|++.  +|++|++|||..+
T Consensus        78 ~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~-y~~v~~~~~~~i~~~l~~-GPV~v~~~~~~~~f~~Y~~Giy~~~  152 (216)
T 1ppo_A           78 NGIHLRSKYPYKAKQG---TCRAKQVGGPIVKTSG-VGRVQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFEGP  152 (216)
T ss_dssp             HCBCBTTTSCCCSSCC---CCCGGGCCSCCBCCCE-EEECCSSCHHHHHHHHHH-SCEEEEECCCSHHHHHCCSSEECCS
T ss_pred             hCcCccccCCccCCCC---CcCCCCCCCceEEecc-EEEECCCCHHHHHHHHHh-CCEEEEEecCChhhhhcCCceECCC
Confidence            3899999999999888   8986543 45678999 98887  89999999997 9999999993  8999999999764


Q ss_pred             CCCCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccc----cccCccccc
Q psy282           76 DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN----NACGKDFLH  133 (233)
Q Consensus        76 ~~~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~----~~Cgi~~~~  133 (233)
                         |+. .++|||+|||||.+++.+|||+|||||+.|||+||+|+.++.    +.|++...+
T Consensus       153 ---~~~-~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~n~Cgi~~~~  210 (216)
T 1ppo_A          153 ---CGT-KVDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSS  210 (216)
T ss_dssp             ---CCS-CCCEEEEEEEEEEETTEEEEEEECSBCSSSTBTTEEEEECCCSSSSCGGGTTSCC
T ss_pred             ---CCC-CCCEEEEEEEeeccCCccEEEEEeCCCCCcccCcEEEEEcCCCCCCCcCccccce
Confidence               765 479999999999999999999999999999999999999984    789997654

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} SCOP: d.3.1.0

Probab=99.96  E-value=3.9e-30  Score=214.38  Aligned_cols=124  Identities=29%  Similarity=0.605  Sum_probs=110.4

Q ss_pred             CCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC-CHHHHHHHHHhcCCEEEEEecC--CCCCcCC-ceeeCCCC
Q psy282            2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN-GSETMKKILYKYGPLSVLLNSD--LIHDYNG-TPIRKNDE   77 (233)
Q Consensus         2 Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~-~~~~i~~~l~~~GPv~v~i~~~--~f~~y~~-Gi~~~~~~   77 (233)
                      ||++|++|||.+.++   .|+..... .++|.+ |..++ ++++||++|. +|||+++|++.  +|++|++ |||..+  
T Consensus        80 Gi~~e~~yPY~~~~~---~C~~~~~~-~~~i~~-~~~v~~~~~~i~~~l~-~GPV~v~i~~~~~~f~~Y~~~Giy~~~--  151 (222)
T 3u8e_A           80 GIASDANYPYTGVDG---TCDLNKPI-AARIDG-YTNVPNSSSALLDAVA-KQPVSVNIYTSSTSFQLYTGPGIFAGS--  151 (222)
T ss_dssp             CBCBTTTSCCCSSCC---CCCCCSCC-CBCCCE-EEECCSCHHHHHHHHH-HSCEEEEECCCSHHHHTCCCSSCBCCT--
T ss_pred             CccchhcCCCcccCC---ccccCCCC-eEEEcc-EEEeCCcHHHHHHHHh-CCCEEEEEEecChhhhcEeCCceECCC--
Confidence            899999999999888   89876554 788899 99996 9999999995 59999999994  7999999 999886  


Q ss_pred             CCCC--CCCCcEEEEEeeeccC-CccEEEEecCCCCCCCCCcceeeecccc----ccCccccc
Q psy282           78 TCSP--YDLGHAVLLVGYGKQD-DIPYWLVRNSWGPIGPDEGFFKIERGNN----ACGKDFLH  133 (233)
Q Consensus        78 ~c~~--~~~~H~v~ivG~g~~~-~~~ywivknswg~~wge~gy~~~~~~~~----~Cgi~~~~  133 (233)
                      .|..  ..++|||+|||||.++ +.+|||||||||+.|||+||+|+.++.+    .|++...+
T Consensus       152 ~~~~~~~~~~HaV~iVGyg~~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~g~Cgi~~~~  214 (222)
T 3u8e_A          152 SCSDDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWG  214 (222)
T ss_dssp             TCCCCGGGCCEEEEEEEEEESSTTCEEEEEECSBCTTSTBTTEEEEECSCSCTTCGGGTTSSC
T ss_pred             cccCCCCcCCEEEEEEEEeecCCCCcEEEEECCCCCCcccCCEEEEEcCCCCCCCcCCccccc
Confidence            3755  3679999999999988 9999999999999999999999999876    89998754

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*

Probab=99.96  E-value=5.1e-30  Score=232.39  Aligned_cols=129  Identities=27%  Similarity=0.570  Sum_probs=110.9

Q ss_pred             CCCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC------CHHHHHHHHHhcCCEEEEEecC-CCCCcCCceee
Q psy282            1 MGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN------GSETMKKILYKYGPLSVLLNSD-LIHDYNGTPIR   73 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~------~~~~i~~~l~~~GPv~v~i~~~-~f~~y~~Gi~~   73 (233)
                      +||++|++|||.+.++   +|+..+....+++.+ |..++      ++++||++|+++|||+|+|++. +|++|++|||.
T Consensus       290 ~Gi~tE~~yPY~~~~~---~C~~~~~~~~~~~~~-y~~v~~~~~~~~e~~ik~al~~~GPVsvai~a~~~F~~Y~sGVy~  365 (441)
T 3pdf_A          290 FGLVEEACFPYTGTDS---PCKMKEDCFRYYSSE-YHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYH  365 (441)
T ss_dssp             TCBCBGGGSCCCSSCC---CSCCCSSCCCBCEEE-EEETTSSTTCCCHHHHHHHHHHHCCEEEEECCCGGGGGCCSSEEC
T ss_pred             cCCCcHHHeeecccCC---CCCCccccceeeecc-EEEeCCccCCCcHHHHHHHHHHCCCeEEEEEecccccccCCceEe
Confidence            4999999999999888   898765555566777 77663      8999999999999999999995 99999999998


Q ss_pred             CCCCCCCC-----CCCCcEEEEEeeecc--CCccEEEEecCCCCCCCCCcceeeeccccccCccccccc
Q psy282           74 KNDETCSP-----YDLGHAVLLVGYGKQ--DDIPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFLHFN  135 (233)
Q Consensus        74 ~~~~~c~~-----~~~~H~v~ivG~g~~--~~~~ywivknswg~~wge~gy~~~~~~~~~Cgi~~~~~~  135 (233)
                      .+.  |..     ..++|||+|||||.+  ++.+|||||||||+.|||+||+|+.|+.+.|+|++.+..
T Consensus       366 ~~~--~~~~~~~~~~~~HaV~iVGyG~~~~~G~~YWIVkNSWG~~WGe~GYfri~rg~n~CGI~s~~~a  432 (441)
T 3pdf_A          366 HTG--LRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVA  432 (441)
T ss_dssp             CC-----CCCCCCCCCCEEEEEEEEEECTTTCCEEEEEECSBCTTSTBTTEEEEECSSCGGGTTSCCEE
T ss_pred             cCC--CCcccCCCCcCCeEEEEEEecccCCCCceEEEEEcCCCCCcCCCeEEEEEcCCCccCCCCceEE
Confidence            763  322     458999999999985  689999999999999999999999999999999876543

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E*

Probab=99.96  E-value=3.5e-30  Score=214.12  Aligned_cols=124  Identities=28%  Similarity=0.527  Sum_probs=109.2

Q ss_pred             CCCCCCCCCCCCCCCCCccccccCCC-ceeEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEecC--CCCCcCCceeeCC
Q psy282            1 MGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKN   75 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~C~~~~~-~~~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~~--~f~~y~~Gi~~~~   75 (233)
                      +||++|++|||.+.++   .|+..+. ...++|.+ |..++  ++++||++|++ |||+++|++.  +|++|++|||..+
T Consensus        78 ~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~-y~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~~~  152 (218)
T 1yal_A           78 NGVHTSKVYPYQAKQY---KCRATDKPGPKVKITG-YKRVPSNCETSFLGALAN-QPLSVLVEAGGKPFQLYKSGVFDGP  152 (218)
T ss_dssp             HCBCBTTTSCCCSSCC---CCCGGGCCSCCBCCSE-EEECCSSBHHHHHHHHTT-SCEEEEECCCSHHHHTCCSSEECCS
T ss_pred             cCCCccccccccCCCC---CcccCcCCCceEEEee-EEEeCCCCHHHHHHHHHh-CCEEEEEeccchhccccCCceECCC
Confidence            3899999999999888   8986543 45678999 98887  79999999987 9999999994  8999999999864


Q ss_pred             CCCCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccc----cccCccccc
Q psy282           76 DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN----NACGKDFLH  133 (233)
Q Consensus        76 ~~~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~----~~Cgi~~~~  133 (233)
                         |+. .++|+|+|||||.+++.+|||||||||+.|||+||+|+.++.    +.|+|...+
T Consensus       153 ---~~~-~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~  210 (218)
T 1yal_A          153 ---CGT-KLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSS  210 (218)
T ss_dssp             ---CCS-CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECCCSBSCCGGGTTSSC
T ss_pred             ---CCC-CCCEEEEEEEeeccCCccEEEEEeCCCCCcccCcEEEEECCCCCCCCccccccce
Confidence               765 479999999999999999999999999999999999999984    789997654

>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia arguta} SCOP: d.3.1.1 PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A

Probab=99.96  E-value=3.8e-30  Score=214.18  Aligned_cols=123  Identities=29%  Similarity=0.659  Sum_probs=107.6

Q ss_pred             CCCCCCCCCCCCCCCCccccccCCCc-eeEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEecC--CCCCcCCceeeCCC
Q psy282            2 GLESEKDYPYKNANGEKFKCAYDKSK-VKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKND   76 (233)
Q Consensus         2 Gi~~e~~yPY~~~~~~~~~C~~~~~~-~~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~~--~f~~y~~Gi~~~~~   76 (233)
                      ||++|++|||.+.++   .|+..... ..+++.+ |..++  ++++||++| .+|||+++|++.  +|+.|++|||..+ 
T Consensus        82 Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~-~~~v~~~~~~~l~~~l-~~GPV~v~~~~~~~~f~~Y~~Giy~~~-  155 (220)
T 3p5u_A           82 GINTEANYPYTAEEG---QCNLDLQQEKYVSIDT-YENVPYNNEWALQTAV-AYQPVSVALEAAGYNFQHYSSGIFTGP-  155 (220)
T ss_dssp             CBCBTTTSCCCSSCC---CCCHHHHTCCSBCCCE-EEECCTTCHHHHHHHH-TTSCEEEEECCCSHHHHTCCSSEECCC-
T ss_pred             CcCcccccccccCCC---CcCcCCCCCceEEEcc-EEEeCCCcHHHHHHHH-hcCCEEEEEecCchhhccccCceECCC-
Confidence            899999999999888   89854332 3477888 99886  889999999 579999999994  7999999999774 


Q ss_pred             CCCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeecccc---ccCccccc
Q psy282           77 ETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNN---ACGKDFLH  133 (233)
Q Consensus        77 ~~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~~---~Cgi~~~~  133 (233)
                        |+. .++|||+|||||++++.+|||||||||+.|||+||+|+.|+.+   .|++.+.+
T Consensus       156 --~~~-~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~Cgi~~~~  212 (220)
T 3p5u_A          156 --CGT-AVDHAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKA  212 (220)
T ss_dssp             --CCC-SCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECCCCTTCGGGTTSSC
T ss_pred             --CCC-ccceEEEEEEEecCCCceEEEEECCCCCCcccCCEEEEECCCCCCCccCccccc
Confidence              755 4799999999999999999999999999999999999999876   89998754

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} SCOP: d.3.1.0 PDB: 4hwy_A* 3mor_A*

Probab=99.96  E-value=4.1e-30  Score=225.32  Aligned_cols=131  Identities=27%  Similarity=0.467  Sum_probs=105.4

Q ss_pred             CCCCCCCCCCCC-CC-----C--CCcccccc----------C---CC---ceeEEeCCceEEeCCHHHHHHHHHhcCCEE
Q psy282            1 MGLESEKDYPYK-NA-----N--GEKFKCAY----------D---KS---KVKLFTGKDFLHFNGSETMKKILYKYGPLS   56 (233)
Q Consensus         1 ~Gi~~e~~yPY~-~~-----~--~~~~~C~~----------~---~~---~~~~~i~~~~~~v~~~~~i~~~l~~~GPv~   56 (233)
                      +||++|++|||. +.     .  +....|+.          .   ..   .....+.. |. +.++++||++|+++|||+
T Consensus       155 ~Gi~~e~~yPY~~~~c~~~~~~~~~~~~C~~~~~~~~~c~~~c~~~~~~~~~~~~~~~-y~-v~~~~~i~~~i~~~GPV~  232 (325)
T 3hhi_A          155 TGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPTIPVVNYRSWTS-YA-LQGEDDYMRELFFRGPFE  232 (325)
T ss_dssp             TCBCBTTTSCCSSCCCBSSSCCTTCCCBGGGCCCCCCCCCSSCSSTTSCCCCBCEEEE-EE-ECSHHHHHHHHHHHCCEE
T ss_pred             hCCCcccccCCccccccccccccccCCCCCCcccCCcchhhcccccccccceEEeecc-eE-eCCHHHHHHHHHHCCCEE
Confidence            589999999998 32     1  00115651          1   00   12234556 65 479999999999999999


Q ss_pred             EEEecC-CCCCcCCceeeCCCCCCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccccccCccccccc
Q psy282           57 VLLNSD-LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFLHFN  135 (233)
Q Consensus        57 v~i~~~-~f~~y~~Gi~~~~~~~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~~~Cgi~~~~~~  135 (233)
                      |+|++. +|++|++|||..+   |....++|||+|||||++++.+|||||||||+.|||+||+|+.|+.+.|+|++.+..
T Consensus       233 v~i~~~~~f~~Y~~GVy~~~---~~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~GY~~i~rg~n~CGI~~~~~~  309 (325)
T 3hhi_A          233 VAFDVYEDFIAYNSGVYHHV---SGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGGSA  309 (325)
T ss_dssp             EEEEEEHHHHTCCSSEECCC---SCCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTSCEEE
T ss_pred             EEEEeccccccccCceecCC---CCCCCCCEEEEEEEEEecCCceEEEEEeCCCCCcccCCEEEEEcCCCeecCccceEE
Confidence            999995 8999999999876   555567999999999999999999999999999999999999999999999887654


Q ss_pred             C
Q psy282          136 G  136 (233)
Q Consensus       136 ~  136 (233)
                      .
T Consensus       310 g  310 (325)
T 3hhi_A          310 G  310 (325)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A

Probab=99.96  E-value=6.3e-30  Score=215.64  Aligned_cols=122  Identities=28%  Similarity=0.551  Sum_probs=108.9

Q ss_pred             CCCCCCCCCCCCCCCCCccc-cccCCCceeEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEecC-CCCCcCCceeeCCC
Q psy282            1 MGLESEKDYPYKNANGEKFK-CAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD-LIHDYNGTPIRKND   76 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~-C~~~~~~~~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~~-~f~~y~~Gi~~~~~   76 (233)
                      .|+++|++|||.+...   . |+.......++|++ |..++  ++++||++|   |||+++|++. +|+.|++|||... 
T Consensus        96 ~Gi~~e~~yPY~~~~~---~~C~~~~~~~~~~i~~-~~~v~~~~~~~ik~~l---GPV~v~i~~~~~f~~Y~~Giy~~~-  167 (241)
T 2oul_A           96 GGICPDGDYPYVSDAP---NLCNIDRCTEKYGIKN-YLSVPDNKLKEALRFL---GPISISVAVSDDFAFYKEGIFDGE-  167 (241)
T ss_dssp             TSBCBTTSSCCCTTSC---CCCCTTSSSCCBCCSE-EEECCTTCHHHHHHHT---CCEEEEECBCHHHHTCCSSBCCSC-
T ss_pred             CCcCccccCCCcCCCC---CcCCCCCCccceeeee-EEEeCCCCHHHHHHhh---CCEEEEEecCcchhhcCCcEEcCc-
Confidence            4999999999999887   7 98766667788999 98887  899999999   9999999996 8999999999873 


Q ss_pred             CCCCCCCCCcEEEEEeeeccC----------CccEEEEecCCCCCCCCCcceeeeccccc----cCccccc
Q psy282           77 ETCSPYDLGHAVLLVGYGKQD----------DIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGKDFLH  133 (233)
Q Consensus        77 ~~c~~~~~~H~v~ivG~g~~~----------~~~ywivknswg~~wge~gy~~~~~~~~~----Cgi~~~~  133 (233)
                        |+.. ++|||+|||||.+.          +.+|||||||||+.|||+||+|+.++.+.    |++.+.+
T Consensus       168 --c~~~-~~HaV~iVGyg~~~~~~~~~~~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~g~Cgi~~~~  235 (241)
T 2oul_A          168 --CGDQ-LNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDA  235 (241)
T ss_dssp             --BCSS-CCEEEEEEEEEEEEEECTTTCSEEEEEEEEEECSBCTTSTBTTEEEEEECSSSCCCGGGTTSSE
T ss_pred             --CCCC-CCEEEEEEEeccccccccccccCCCCCEEEEEeCCCCCcccCCEEEEEcCCCCCCCcCCccceE
Confidence              8765 89999999999876          78999999999999999999999998765    9997654

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A

Probab=99.96  E-value=8e-30  Score=219.09  Aligned_cols=125  Identities=23%  Similarity=0.452  Sum_probs=107.4

Q ss_pred             CCCCCCCCCCCCCCCCCcccccc-C--------------CCceeEEeCCceEEeCCHHHHHHHHHhcCCEEEEEecC-CC
Q psy282            1 MGLESEKDYPYKNANGEKFKCAY-D--------------KSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSD-LI   64 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~C~~-~--------------~~~~~~~i~~~~~~v~~~~~i~~~l~~~GPv~v~i~~~-~f   64 (233)
                      +||++|++|||.+.++   .|+. .              .....+++.+ |..++++++||++|+++|||+++|++. +|
T Consensus       121 ~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~~~~c~~~~~~~~~~i~~-y~~v~~~~~i~~~i~~~GPV~v~i~~~~~f  196 (277)
T 1deu_A          121 HGIPDETCNNYQAKDQ---ECDKFNQCGTCNEFKECHAIRNYTLWRVGD-YGSLSGREKMMAEIYANGPISCGIMATERL  196 (277)
T ss_dssp             TCBCBGGGSCCCSSCC---CCCHHHHSEEEEETTEEEECSSCCCBCEEE-EEEECSHHHHHHHHHHHCCEEEEECCCHHH
T ss_pred             cCCCcCccCCCcCCCC---CccccccccccccCcccccccCcceEEece-eEecCCHHHHHHHHHHcCCEEEEEeccccc
Confidence            5899999999999887   6762 1              1113456777 888888999999999999999999996 89


Q ss_pred             CCcCCceeeCCCCCCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeecccc--------ccCcccc
Q psy282           65 HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNN--------ACGKDFL  132 (233)
Q Consensus        65 ~~y~~Gi~~~~~~~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~~--------~Cgi~~~  132 (233)
                      ++|++|||..+  .| ...++|||+|||||.+++.+|||||||||+.|||+||+|+.++.+        .|+|++.
T Consensus       197 ~~Y~~GIy~~~--~~-~~~~~HaV~iVGyg~~~g~~YWivkNSWG~~WGe~GY~~i~rg~n~~g~g~~~~cgIe~~  269 (277)
T 1deu_A          197 ANYTGGIYAEY--QD-TTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNLAIEEH  269 (277)
T ss_dssp             HTCCSSEECBC--CS-CCCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECTTHHHHTGGGTBTTTTSC
T ss_pred             ccCcCcEECCC--CC-CCcCCeEEEEEEecccCCccEEEEEeCCCCccCCCcEEEEEcCCCcccccccccceeccc
Confidence            99999999886  24 456899999999999999999999999999999999999999987        7887654

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} SCOP: d.3.1.0

Probab=99.96  E-value=7.5e-30  Score=212.79  Aligned_cols=124  Identities=27%  Similarity=0.528  Sum_probs=111.4

Q ss_pred             CCCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEecC--CCCCcCCceeeCCC
Q psy282            1 MGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKND   76 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~~--~f~~y~~Gi~~~~~   76 (233)
                      .||++|++|||++.++   .|+..+.....++.+ |..++  ++++||++|+ +|||+++|++.  +|++|++|||. + 
T Consensus        87 ~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~i~~-~~~~~~~~~~~l~~~l~-~gPV~v~i~~~~~~f~~y~~Giy~-~-  159 (224)
T 3f75_A           87 GGICSEDAYPYLARDE---ECRAQSCEKVVKILG-FKDVPRRSEAAMKAALA-KSPVSIAIEADQMPFQFYHEGVFD-A-  159 (224)
T ss_dssp             TCBCBTTTSCCCSSCC---CCCGGGSCCCBCCSE-EEECCSSCHHHHHHHHH-HSCEEEEECCCSHHHHTEEEEEEC-C-
T ss_pred             CCccccccCCCcCCCC---CCCcCCCCceEEecc-EEEeCCChHHHHHHHHc-CCCEEEEEeccchhhhcCccceEC-C-
Confidence            4899999999999988   898776666678889 99886  8999999999 79999999995  79999999998 4 


Q ss_pred             CCCCCCCCCcEEEEEeeecc--CCccEEEEecCCCCCCCCCcceeeeccc---cccCccccc
Q psy282           77 ETCSPYDLGHAVLLVGYGKQ--DDIPYWLVRNSWGPIGPDEGFFKIERGN---NACGKDFLH  133 (233)
Q Consensus        77 ~~c~~~~~~H~v~ivG~g~~--~~~~ywivknswg~~wge~gy~~~~~~~---~~Cgi~~~~  133 (233)
                       .|+ ..++|||+|||||.+  ++.+|||||||||+.||++||+|+.++.   +.|+|.+.+
T Consensus       160 -~~~-~~~~Hav~iVGyg~~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~~cgi~~~~  219 (224)
T 3f75_A          160 -SCG-TDLDHGVLLVGYGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGLLLDA  219 (224)
T ss_dssp             -CCC-CCCCEEEEEEEEEEETTTTEEEEEEECSBCTTSTBTTEEEEESCSCTTCGGGTTSSC
T ss_pred             -CCC-CccCeEEEEEEEecccCCCCCEEEEECCcCcchhhCCEEEEEcCCCCCCcCcccCce
Confidence             474 578999999999988  8899999999999999999999999997   999998754

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1

Probab=99.96  E-value=6.7e-30  Score=223.74  Aligned_cols=124  Identities=27%  Similarity=0.507  Sum_probs=110.2

Q ss_pred             CCCCCCCCCCCCCCCCCccccccCCC-ceeEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEecC--CCCCcCCceeeCC
Q psy282            1 MGLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKN   75 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~C~~~~~-~~~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~~--~f~~y~~Gi~~~~   75 (233)
                      +||++|++|||.+.++   .|+..+. ...++|.+ |..|+  ++++||++|++ |||+|+|++.  +|++|++|||..+
T Consensus       184 ~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~-~~~v~~~~e~~l~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~~~  258 (322)
T 1pci_A          184 NGIHLRSKYPYKAKQG---TCRAKQVGGPIVKTSG-VGRVQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFEGP  258 (322)
T ss_dssp             HCBCBTTTSCCCSSCC---CCTTTTCCSCCBCCCC-EEECCSSBHHHHHHHHHH-SCEEEEECTTCHHHHTEEEEEECCS
T ss_pred             hCCCchhhCCCCCCCC---CCCCCCCCCceEEEee-EEEeCCCcHHHHHHHHHH-CCEEEEEecccccccccCCeEeCCC
Confidence            4899999999999988   8987643 35678999 99997  89999999997 9999999994  8999999999764


Q ss_pred             CCCCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccc----cccCccccc
Q psy282           76 DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN----NACGKDFLH  133 (233)
Q Consensus        76 ~~~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~----~~Cgi~~~~  133 (233)
                         |+. .++|||+|||||.+++.+|||||||||+.||++||+|+.++.    +.|+|.+.+
T Consensus       259 ---c~~-~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~n~CgI~~~~  316 (322)
T 1pci_A          259 ---CGT-KVDGAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSS  316 (322)
T ss_dssp             ---CCS-CCCEEEEEEEEEEETTEEEEEEECSBCSSSTBTTEEEEECCCSBSSCGGGGGGCC
T ss_pred             ---CCC-CCCEEEEEEEEeccCCccEEEEEeCCCCcccCCeEEEEEcCCCCCCCcCCcccce
Confidence               865 479999999999999999999999999999999999999985    899997654

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A*

Probab=99.96  E-value=9e-30  Score=214.93  Aligned_cols=122  Identities=27%  Similarity=0.546  Sum_probs=108.5

Q ss_pred             CCCCCCCCCCCCCCCCCccc-cccCCCceeEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEecC-CCCCcCCceeeCCC
Q psy282            1 MGLESEKDYPYKNANGEKFK-CAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD-LIHDYNGTPIRKND   76 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~-C~~~~~~~~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~~-~f~~y~~Gi~~~~~   76 (233)
                      .|+++|++|||.+...   . |+.......+++++ |..++  ++++||++|   |||+++|++. +|+.|++|||... 
T Consensus        98 ~Gi~~e~~yPY~~~~~---~~C~~~~~~~~~~i~~-~~~v~~~~~~~ik~~l---GPV~v~i~~~~~f~~Y~~Giy~~~-  169 (243)
T 3bwk_A           98 GGLCSQDDYPYVSNLP---ETCNLKRCNERYTIKS-YVSIPDDKFKEALRYL---GPISISIAASDDFAFYRGGFYDGE-  169 (243)
T ss_dssp             TSBCBTTTSCCCTTSC---CCCCGGGCSSCBCCCE-EEECCTTCHHHHHHHT---CCEEEEECCCHHHHTCCSSSCCCC-
T ss_pred             CCcccccccCCcCCCC---CcCCCCCCccceeeee-EEEeCCCCHHHHHHhh---CCEEEEEecChhHHhcCCceecCC-
Confidence            4999999999999877   7 98766566788999 98887  899999999   9999999996 8999999999873 


Q ss_pred             CCCCCCCCCcEEEEEeeeccC----------CccEEEEecCCCCCCCCCcceeeeccccc----cCccccc
Q psy282           77 ETCSPYDLGHAVLLVGYGKQD----------DIPYWLVRNSWGPIGPDEGFFKIERGNNA----CGKDFLH  133 (233)
Q Consensus        77 ~~c~~~~~~H~v~ivG~g~~~----------~~~ywivknswg~~wge~gy~~~~~~~~~----Cgi~~~~  133 (233)
                        |+.. ++|||+|||||.++          +.+|||||||||+.||++||+|+.++.+.    |++.+.+
T Consensus       170 --c~~~-~~HaV~iVGyg~~~~~~~~~~~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~g~Cgi~~~~  237 (243)
T 3bwk_A          170 --CGAA-PNHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEA  237 (243)
T ss_dssp             --CCSS-CCEEEEEEEEEEEEEECTTTCSEEEEEEEEEECSBCTTSTBTTEEEEEECSSSCCCSTTTTSSE
T ss_pred             --CCCc-CCeEEEEEEecCccccccccccCCCCCEEEEEeCCCCCcCCCcEEEEEcCCCCCCCcCCccceE
Confidence              7665 89999999999876          78999999999999999999999998765    9997654

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ...

Probab=99.96  E-value=2.7e-29  Score=207.91  Aligned_cols=120  Identities=27%  Similarity=0.507  Sum_probs=106.0

Q ss_pred             CCCCCCCCCCCCCCCCCccccccCC-CceeEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEecC--CCCCcCCceeeCC
Q psy282            1 MGLESEKDYPYKNANGEKFKCAYDK-SKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKN   75 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~C~~~~-~~~~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~~--~f~~y~~Gi~~~~   75 (233)
                      +||++|++|||.+.++   .|+..+ ....+++++ |..++  ++++||++|++ |||+++|++.  +|++|++|||..+
T Consensus        78 ~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~-~~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~~~  152 (212)
T 2cio_A           78 YGIHYRNTYPYEGVQR---YCRSREKGPYAAKTDG-VRQVQPYNEGALLYSIAN-QPVSVVLEAAGKDFQLYRGGIFVGP  152 (212)
T ss_dssp             TCBCBTTTSCCCSSCC---CCCTTTTCSCSBCCSE-EEECCSSCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECCC
T ss_pred             hCcCcccccCCcCCCC---CcCCCCCCCceEEEee-EEEeCCccHHHHHHHHHh-CCEEEEEeccCcchhhcCCceecCC
Confidence            5899999999999888   898765 345688999 98887  89999999987 9999999994  7999999999875


Q ss_pred             CCCCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccc----cccCccccc
Q psy282           76 DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN----NACGKDFLH  133 (233)
Q Consensus        76 ~~~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~----~~Cgi~~~~  133 (233)
                         |+. .++|||+|||||.    +|||+|||||+.|||+||+|+.++.    +.|++.+.+
T Consensus       153 ---~~~-~~~HaV~iVGyg~----~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~  206 (212)
T 2cio_A          153 ---CGN-KVDHAVAAVGYGP----NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSS  206 (212)
T ss_dssp             ---CCS-CCCEEEEEEEEET----TEEEEECSBCTTSTBTTEEEEECSSSCTTCGGGTTSCC
T ss_pred             ---CCC-CCCEEEEEEEecC----CeEEEEeCCCCCcccCcEEEEEcCCCCCCCccCcccce
Confidence               765 5799999999996    8999999999999999999999985    889997654

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1

Probab=99.96  E-value=2.3e-29  Score=210.70  Aligned_cols=123  Identities=28%  Similarity=0.616  Sum_probs=107.8

Q ss_pred             CCCCCCCCCCCCCCCCccccccCC-CceeEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEec-C-CCCCcCCceeeCCC
Q psy282            2 GLESEKDYPYKNANGEKFKCAYDK-SKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNS-D-LIHDYNGTPIRKND   76 (233)
Q Consensus         2 Gi~~e~~yPY~~~~~~~~~C~~~~-~~~~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~-~-~f~~y~~Gi~~~~~   76 (233)
                      ||++|++|||.+.++   .|+... ....+++.+ |..++  ++++||++|++ |||+++|++ . +|++|++|||..+ 
T Consensus        82 Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~-y~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~~~-  155 (229)
T 1s4v_A           82 GITTEANYPYEAYDG---TCDVSKENAPAVSIDG-HENVPENDENALLKAVAN-QPVSVAIDAGGSDFQFYSEGVFTGS-  155 (229)
T ss_dssp             CBCBTTTSCCCSSCC---CCCHHHHTCCCBCCCE-EEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECCC-
T ss_pred             CccccccCCccCCCC---CCCCCCCCCcEEEeee-EEEeCCccHHHHHHHHhc-CCEEEEEEeCcHHHhhCCCcEECCC-
Confidence            899999999999888   898642 234578888 98887  88999999997 999999999 4 8999999999764 


Q ss_pred             CCCCCCCCCcEEEEEeeeccC-CccEEEEecCCCCCCCCCcceeeeccc----cccCccccc
Q psy282           77 ETCSPYDLGHAVLLVGYGKQD-DIPYWLVRNSWGPIGPDEGFFKIERGN----NACGKDFLH  133 (233)
Q Consensus        77 ~~c~~~~~~H~v~ivG~g~~~-~~~ywivknswg~~wge~gy~~~~~~~----~~Cgi~~~~  133 (233)
                        |+. .++|||+|||||.++ +.+|||||||||+.|||+||+|+.++.    +.|++...+
T Consensus       156 --c~~-~~~HaV~iVGyg~~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~  214 (229)
T 1s4v_A          156 --CGT-ELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEA  214 (229)
T ss_dssp             --CCC-CCCEEEEEEEEEECTTSCEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSC
T ss_pred             --CCC-CCCeEEEEEEeccccCCCCEEEEEeCCCCCccCCcEEEEEcCCCCCCCcCcccccc
Confidence              765 479999999999987 899999999999999999999999984    789997654

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*

Probab=99.96  E-value=4.4e-29  Score=206.09  Aligned_cols=118  Identities=26%  Similarity=0.591  Sum_probs=104.5

Q ss_pred             CCCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEecC--CCCCcCCceeeCCC
Q psy282            1 MGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKND   76 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~~--~f~~y~~Gi~~~~~   76 (233)
                      .||++|++|||.+.++   .|+.  ....+++++ |..++  ++++||++|++ |||+++|++.  +|++|++|||..+ 
T Consensus        79 ~Gi~~e~~yPY~~~~~---~C~~--~~~~~~i~~-~~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~~~-  150 (208)
T 1o0e_A           79 GGIDTQANYPYKAVQG---PCQA--ASKVVSIDG-YNGVPFCNEXALKQAVAV-QPSTVAIDASSAQFQQYSSGIFSGP-  150 (208)
T ss_dssp             TCBCBTTTSCCCSSCC---CCCC--CCCCBCCCE-EEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECCC-
T ss_pred             CCcCcccccCccCCCC---cCCC--CCceEEeCe-EEEeCCCCHHHHHHHHHh-CCEEEEEEccCcccccccCceECCC-
Confidence            3999999999999888   8986  345678888 98887  89999999987 9999999994  7999999999875 


Q ss_pred             CCCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccc--cccCccccc
Q psy282           77 ETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN--NACGKDFLH  133 (233)
Q Consensus        77 ~~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~--~~Cgi~~~~  133 (233)
                        |+. .++|||+|||||.    +|||+|||||+.|||+||+|+.++.  +.|++.+.+
T Consensus       151 --c~~-~~~HaV~iVGyg~----~yWivkNSWG~~WGe~Gy~~i~~~~~~~~Cgi~~~~  202 (208)
T 1o0e_A          151 --CGT-KLNHGVTIVGYQA----NYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLP  202 (208)
T ss_dssp             --CCS-CCCEEEEEEEECS----SEEEEECSBCTTSTBTTEEEEECCSTTCGGGTTSSC
T ss_pred             --CCC-cCCEEEEEEEeCC----CeEEEEcCCCCcccCCcEEEEEcCCCCCcCCCcccc
Confidence              765 5799999999996    8999999999999999999999986  899997654

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare}

Probab=99.96  E-value=2.6e-29  Score=214.07  Aligned_cols=123  Identities=28%  Similarity=0.631  Sum_probs=108.0

Q ss_pred             CCCCCCCCCCCCCCCCccccccCC---Cce-eEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEecC--CCCCcCCceee
Q psy282            2 GLESEKDYPYKNANGEKFKCAYDK---SKV-KLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIR   73 (233)
Q Consensus         2 Gi~~e~~yPY~~~~~~~~~C~~~~---~~~-~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~~--~f~~y~~Gi~~   73 (233)
                      ||++|++|||.+.++   .|+...   ... .++|++ |..++  ++++||++|++ |||+++|++.  +|++|++|||.
T Consensus        84 Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~~~~i~~-y~~v~~~~e~~ik~al~~-GPV~v~i~~~~~~f~~Y~sGVy~  158 (262)
T 2fo5_A           84 GLITEAAYPYRAARG---TCNVARAAQNSPVVVHIDG-HQDVPANSEEDLARAVAN-QPVSVAVEASGKAFMFYSEGVFT  158 (262)
T ss_dssp             CEEBTTTSCCCSSCC---CCCHHHHHHHCCCEECCCE-EEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEEC
T ss_pred             CcCchhcCCCcCccC---ccCCcccccCCceeEEece-EEEcCCchHHHHHHHHHh-CCEEEEEecChHHHhccCCceEC
Confidence            899999999999888   898654   345 788999 99887  89999999998 9999999994  89999999998


Q ss_pred             CCCCCCCCCCCCcEEEEEeeecc-CCccEEEEecCCCCCCCCCcceeeeccc----cccCccccc
Q psy282           74 KNDETCSPYDLGHAVLLVGYGKQ-DDIPYWLVRNSWGPIGPDEGFFKIERGN----NACGKDFLH  133 (233)
Q Consensus        74 ~~~~~c~~~~~~H~v~ivG~g~~-~~~~ywivknswg~~wge~gy~~~~~~~----~~Cgi~~~~  133 (233)
                      .+   |+. .++|+|+|||||.+ ++.+|||||||||+.|||+||+|+.++.    +.|+|+..+
T Consensus       159 ~~---c~~-~~~HaV~IVGyg~~~~G~~YWivkNSWG~~WGe~GY~ri~r~~n~~~~~CgI~~~~  219 (262)
T 2fo5_A          159 GE---CGT-ELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEA  219 (262)
T ss_dssp             CC---CCC-CCCEEEEEEEEEECTTSCEEEEEECSBCTTSTBTTEEEEESSCSCTTCGGGTTTSC
T ss_pred             CC---CCC-cCCEEEEEEEEcccCCCceEEEEEeCCCCCCCCCeEEEEEcCCCCCCCccceeeee
Confidence            74   765 47999999999988 5899999999999999999999999985    459997654

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana}

Probab=99.96  E-value=5.6e-29  Score=206.31  Aligned_cols=119  Identities=29%  Similarity=0.627  Sum_probs=105.8

Q ss_pred             CCCCCCCCCCCCCCCCccccccCCC-ceeEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEecC--CCCCcCCceeeCCC
Q psy282            2 GLESEKDYPYKNANGEKFKCAYDKS-KVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKND   76 (233)
Q Consensus         2 Gi~~e~~yPY~~~~~~~~~C~~~~~-~~~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~~--~f~~y~~Gi~~~~~   76 (233)
                      ||++|++|||.+..+   .|+.... ...+++++ |..++  ++++||++|++ |||+++|++.  +|++|++|||..+ 
T Consensus        79 Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~-y~~v~~~~~~~i~~~l~~-gPV~v~i~~~~~~f~~Y~~Giy~~~-  152 (214)
T 2bdz_A           79 GVHTEREYPYEKKQG---RCRAKDKKGPKVYITG-YKYVPANDEISLIQAIAN-QPVSVVTDSRGRGFQFYKGGIYEGP-  152 (214)
T ss_dssp             CEEBTTTSCCCSSCC---CCCTTTCCSCEECCCE-EEEECSSBHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECCS-
T ss_pred             CCCccccCCCCCCCC---CCCCCCCCCceeeecC-EEEeCCCcHHHHHHHHHh-CCEEEEEeeChhHhhcccCceecCC-
Confidence            899999999999888   8987655 45788999 99887  89999999997 9999999995  8999999999875 


Q ss_pred             CCCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccc----cccCccccc
Q psy282           77 ETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN----NACGKDFLH  133 (233)
Q Consensus        77 ~~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~----~~Cgi~~~~  133 (233)
                        |+. .++|||+|||||.    +|||+|||||+.|||+||+|+.++.    +.|++.+.+
T Consensus       153 --~~~-~~~HaV~iVGyg~----~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~  206 (214)
T 2bdz_A          153 --CGT-NTDHAVTAVGYGK----TYLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSS  206 (214)
T ss_dssp             --CCS-CCCEEEEEEEECS----SEEEEECSBCTTSTBTTEEEEECCCSBSSCGGGTTSCE
T ss_pred             --CCC-CCCeEEEEEEcCC----CeEEEEeCCCCCcccCCEEEEEcCCCCCCCcccccccc
Confidence              765 5899999999996    8999999999999999999999985    789997654

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ...

Probab=99.96  E-value=4.7e-29  Score=213.17  Aligned_cols=98  Identities=30%  Similarity=0.538  Sum_probs=87.4

Q ss_pred             eEEeC-CHHHHHHHHHhcCCEEEEEecC-CCCCcCCceeeCCCCCCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCC
Q psy282           36 FLHFN-GSETMKKILYKYGPLSVLLNSD-LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGP  113 (233)
Q Consensus        36 ~~~v~-~~~~i~~~l~~~GPv~v~i~~~-~f~~y~~Gi~~~~~~~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wg  113 (233)
                      +..++ ++++||++|+++|||+++|++. +|+.|++|||..+   |....++|||+|||||.+++.+|||||||||+.||
T Consensus       156 ~~~v~~~~~~i~~~i~~~GPV~v~i~~~~~f~~Y~~Gvy~~~---~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WG  232 (266)
T 3cbj_A          156 SYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHV---TGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWG  232 (266)
T ss_dssp             CEECCSCHHHHHHHHHHHCCEEEEEEEEGGGGGCCSSEECCC---SSCEEEEEEEEEEEEEEETTEEEEEEECSBCTTST
T ss_pred             eEEeCCCHHHHHHHHHhcCCEEEEEEeccchhhcCCeEEecC---CCCccCCeEEEEEEecccCCceEEEEEcCCCCccC
Confidence            44565 9999999999999999999995 8999999999875   55556799999999999999999999999999999


Q ss_pred             CCcceeeeccccccCcccccccC
Q psy282          114 DEGFFKIERGNNACGKDFLHFNG  136 (233)
Q Consensus       114 e~gy~~~~~~~~~Cgi~~~~~~~  136 (233)
                      |+||+|+.++.+.|+|++.....
T Consensus       233 e~Gy~~i~rg~n~cgI~~~~~~~  255 (266)
T 3cbj_A          233 DNGFFKILRGQDHCGIESEVVAG  255 (266)
T ss_dssp             BTTEEEEECSSCGGGTTTSCEEC
T ss_pred             CCCEEEEEcCCCcccccCceEEE
Confidence            99999999998999998765433

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A

Probab=99.95  E-value=8.9e-29  Score=216.26  Aligned_cols=97  Identities=29%  Similarity=0.532  Sum_probs=88.1

Q ss_pred             eEEeC-CHHHHHHHHHhcCCEEEEEec-CCCCCcCCceeeCCCCCCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCC
Q psy282           36 FLHFN-GSETMKKILYKYGPLSVLLNS-DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGP  113 (233)
Q Consensus        36 ~~~v~-~~~~i~~~l~~~GPv~v~i~~-~~f~~y~~Gi~~~~~~~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wg  113 (233)
                      ...++ ++++||++|+++|||+|+|++ .+|++|++|||..+   |....++|||+|||||++++.+|||||||||+.||
T Consensus       213 ~~~v~~~e~~i~~~i~~~GPV~v~i~~~~~f~~Y~~GVy~~~---~~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WG  289 (317)
T 3pbh_A          213 SYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHV---TGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWG  289 (317)
T ss_dssp             CEEECSCHHHHHHHHHHHCCEEEEEEEEGGGGGEEEEEECCC---SCCEEEEEEEEEEEEEEETTEEEEEEECSBCTTST
T ss_pred             cccCCcHHHHHHHHHHHCCCEEEEEEecccccCCCCcEEccC---CCCCCCCEEEEEEEEEEeCCeeEEEEEcCCCCCcC
Confidence            34566 999999999999999999999 49999999999886   66666799999999999999999999999999999


Q ss_pred             CCcceeeeccccccCccccccc
Q psy282          114 DEGFFKIERGNNACGKDFLHFN  135 (233)
Q Consensus       114 e~gy~~~~~~~~~Cgi~~~~~~  135 (233)
                      |+||+|+.|+.+.|+|++....
T Consensus       290 e~GY~ri~rg~n~CgI~~~~~a  311 (317)
T 3pbh_A          290 DNGFFKILRGQDHCGIESEVVA  311 (317)
T ss_dssp             BTTEEEEECSSCGGGTTTSCEE
T ss_pred             CCcEEEEEcCCCcccCCCceEe
Confidence            9999999999999999876543

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1

Probab=99.95  E-value=1.8e-29  Score=209.30  Aligned_cols=93  Identities=32%  Similarity=0.679  Sum_probs=80.6

Q ss_pred             CccceeeeeecccceEEEEeccccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcEEEE
Q psy282          136 GSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI  215 (233)
Q Consensus       136 ~e~~i~~~l~~~GPv~v~i~~~~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy~~i  215 (233)
                      ++++|+++|.++|||+++|++..|++|++||+......|++..++|||+|||||++++++|||||||||++|||+|||||
T Consensus       116 ~~~~ik~~l~~~GPV~v~i~~~~f~~Y~~Giy~~~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i  195 (214)
T 1m6d_A          116 NEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYL  195 (214)
T ss_dssp             CHHHHHHHHHHHCCEEEEECTHHHHHCCSSEECCCGGGSCTTCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEE
T ss_pred             HHHHHHHHHHhCCCEEEEEEechhhhcCCceecCCCCcCCCCcCCEEEEEEEEeecCCcEEEEEEeCCCCCcccCcEEEE
Confidence            56789999999999999999977999999998643345877678999999999999999999999999999999999999


Q ss_pred             EccCCCCccCCCC
Q psy282          216 EHTLRSHLTHDIP  228 (233)
Q Consensus       216 ~~~~~~~~~~~~~  228 (233)
                      +|+.+.|.+...+
T Consensus       196 ~r~~n~Cgi~~~~  208 (214)
T 1m6d_A          196 HRGSGACGVNTMA  208 (214)
T ss_dssp             ESSSCGGGTTTTC
T ss_pred             EcCCCccccCcee
Confidence            9997765444443

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} SCOP: d.3.1.1

Probab=99.95  E-value=4.5e-28  Score=200.71  Aligned_cols=121  Identities=26%  Similarity=0.546  Sum_probs=101.6

Q ss_pred             CCCCCCCCCCCCCCCCCccccccCC-CceeEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEecC--CCCCcCCceeeCC
Q psy282            1 MGLESEKDYPYKNANGEKFKCAYDK-SKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKN   75 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~C~~~~-~~~~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~~--~f~~y~~Gi~~~~   75 (233)
                      +||++|++|||.+..+   .|+... ....+++.+ |..++  +++.|+++| .+|||+++|++.  +|+.|++|||..+
T Consensus        78 ~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~-~~~v~~~~~~~~~~~~-~~GPV~v~i~~~~~~f~~y~~Giy~~~  152 (213)
T 3ioq_A           78 SGIHLRQYYPYEGVQR---QCRASQAKGPKVKTDG-VGRVPRNNEQALIQRI-AIQPVSIVVEAKGRAFQNYRGGIFAGP  152 (213)
T ss_dssp             HCEEBGGGSCCCSSCC---CCCGGGCCSCEECCCE-EEECCSSCHHHHHHHH-TTSCEEEEECCCSHHHHTCCSSEECCS
T ss_pred             cCCCchhccCcCCCCC---CCCCCccCCceEEecc-EEEeCCchHHHHHHHH-HhCCEEEEEEechhhhhhccCCeEcCC
Confidence            3899999999999888   898633 456788999 99997  455555555 559999999994  8999999999874


Q ss_pred             CCCCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccc----cccCcccccc
Q psy282           76 DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN----NACGKDFLHF  134 (233)
Q Consensus        76 ~~~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~----~~Cgi~~~~~  134 (233)
                         |. ..++|||+|||||.    +|||||||||+.|||+||+|+.|+.    +.|++.+.+.
T Consensus       153 ---~~-~~~~HaV~iVGyg~----~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~  207 (213)
T 3ioq_A          153 ---CG-TSIDHAVAAVGYGN----DYILIKNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSV  207 (213)
T ss_dssp             ---CC-SCCCEEEEEEEEET----TEEEEECSBCTTSTBTTEEEEESSCSSTTCGGGTTSCCE
T ss_pred             ---CC-CccCceEEEEecCC----CeEEEECCCCCCcccCCeEEEEcCCCCCCCcccccCcce
Confidence               64 46799999999985    8999999999999999999999986    7999987543

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ...

Probab=99.95  E-value=9.8e-29  Score=204.88  Aligned_cols=94  Identities=29%  Similarity=0.616  Sum_probs=81.0

Q ss_pred             CccceeeeeecccceEEEEecc--ccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcEE
Q psy282          136 GSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFF  213 (233)
Q Consensus       136 ~e~~i~~~l~~~GPv~v~i~~~--~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy~  213 (233)
                      ++++|+++|.++|||+++|++.  .|++|++|||.  +..|+...++|||+|||||++++++|||||||||++|||+|||
T Consensus       117 ~~~~ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~--~~~~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WG~~Gy~  194 (215)
T 3kwz_A          117 NEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYY--DESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYI  194 (215)
T ss_dssp             CHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEEC--CTTCCTTCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEE
T ss_pred             CHHHHHHHHHHCCCEEEEEeechhhhhcccCCeEC--CCCCCCChhhCEEEEEEEeccCCceEEEEECCcCcccccCCEE
Confidence            6778999999999999999995  79999999986  4578766789999999999999999999999999999999999


Q ss_pred             EEEccC-CCCccCCCCCCC
Q psy282          214 KIEHTL-RSHLTHDIPGVP  231 (233)
Q Consensus       214 ~i~~~~-~~~~~~~~~~~~  231 (233)
                      ||+|+. +.|-+...+-.|
T Consensus       195 ~i~r~~~n~Cgi~~~~~~p  213 (215)
T 3kwz_A          195 LMARNKNNACGIANLASFP  213 (215)
T ss_dssp             EEESSSSSGGGTTSSCEEE
T ss_pred             EEecCCCCccCcCCceeee
Confidence            999997 555444444333

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor}

Probab=99.95  E-value=1.1e-28  Score=216.36  Aligned_cols=115  Identities=25%  Similarity=0.544  Sum_probs=92.3

Q ss_pred             CCCCCcceeeeccccccCccc------------ccccCccceeeeeecccceEEEEecc-ccccccCcceecCCCCCCCC
Q psy282          111 IGPDEGFFKIERGNNACGKDF------------LHFNGSETMKKILYKYGPLSVGLNSH-LIHFYNGTPIRKNDETCSPY  177 (233)
Q Consensus       111 ~wge~gy~~~~~~~~~Cgi~~------------~~~~~e~~i~~~l~~~GPv~v~i~~~-~~~~y~~gi~~~~~~~~~~~  177 (233)
                      .-.|+.|||... +..|....            ++..++++|+++|.+.|||+++|++. .|++|++|||.  .+.|+..
T Consensus       196 i~~e~~yPY~~~-~~~C~~~~~~~~~~i~~~~~v~~~~e~~lk~al~~~GPV~v~i~a~~~f~~Y~~GVy~--~~~c~~~  272 (329)
T 3qt4_A          196 IMSESAYPYEAQ-GDYCRFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDATDELQFYSGGLFY--DQTCNQS  272 (329)
T ss_dssp             BCBTTTSCCCSS-CCCCCCCGGGCCBCCSEEEECCTTCHHHHHHHHHHTCCEEEEECCCGGGTTEEEEEEC--CSSCCSS
T ss_pred             CCcHHHeeeecC-CCCCCCCcccceEEeceEEEecCCCHHHHHHHHHhCCCEEEEEecChhhhhccCceee--cCCCCCC
Confidence            345777887654 35565321            12235778999999999999999995 89999999986  4578766


Q ss_pred             CCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcEEEEEccC-CCCccCCCC
Q psy282          178 DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEHTL-RSHLTHDIP  228 (233)
Q Consensus       178 ~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy~~i~~~~-~~~~~~~~~  228 (233)
                      .++|||+|||||++++++|||||||||++|||+|||||+|+. +.|.++..+
T Consensus       273 ~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~  324 (329)
T 3qt4_A          273 DLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGYWRQVRNYGNNCGIATAA  324 (329)
T ss_dssp             CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSSSGGGTTTTC
T ss_pred             cCCEEEEEEEEEeeCCccEEEEEeCCCCcccCCcEEEEEeCCCCccCCCCce
Confidence            789999999999999999999999999999999999999998 555444433

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} SCOP: d.3.1.1 PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ...

Probab=99.95  E-value=1.3e-28  Score=204.18  Aligned_cols=87  Identities=29%  Similarity=0.633  Sum_probs=77.7

Q ss_pred             CccceeeeeecccceEEEEeccccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcEEEE
Q psy282          136 GSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI  215 (233)
Q Consensus       136 ~e~~i~~~l~~~GPv~v~i~~~~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy~~i  215 (233)
                      ++++|+++|.++|||+++|+++.|++|++|||.    .|....++|||+|||||++++++|||||||||+.|||+|||||
T Consensus       121 ~~~~ik~~l~~~gPV~v~~~~~~f~~Y~~Giy~----~~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i  196 (215)
T 3i06_A          121 DEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMT----SCVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRI  196 (215)
T ss_dssp             CHHHHHHHHHHHCCEEEEECCTTGGGCCSSEEC----SCCCSCCCEEEEEEEEESSSSSCEEEEECSBCTTSTBTTEEEE
T ss_pred             hHHHHHHHHHHCCCEEEEEEchHHhcCCCCccc----CCCCCccCcEEEEEEEeccCCcEEEEEECCCCCCcccCceEEE
Confidence            567899999999999999999889999999985    4665678999999999999999999999999999999999999


Q ss_pred             EccCCCCccCC
Q psy282          216 EHTLRSHLTHD  226 (233)
Q Consensus       216 ~~~~~~~~~~~  226 (233)
                      +|+.+.|.++.
T Consensus       197 ~rg~n~cgi~~  207 (215)
T 3i06_A          197 AKGSNQCLVKE  207 (215)
T ss_dssp             ESSSCGGGTTS
T ss_pred             ecCCCeecCCC
Confidence            99987664433

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0

Probab=99.95  E-value=2.2e-28  Score=214.76  Aligned_cols=115  Identities=27%  Similarity=0.507  Sum_probs=91.1

Q ss_pred             CCCCCcceeeeccccccCccc------------ccccCccceeeeeecccceEEEEecc-ccccccCcceecCCCCCCCC
Q psy282          111 IGPDEGFFKIERGNNACGKDF------------LHFNGSETMKKILYKYGPLSVGLNSH-LIHFYNGTPIRKNDETCSPY  177 (233)
Q Consensus       111 ~wge~gy~~~~~~~~~Cgi~~------------~~~~~e~~i~~~l~~~GPv~v~i~~~-~~~~y~~gi~~~~~~~~~~~  177 (233)
                      .-.|+.|||... +..|....            ++..++++|+++|.+.|||+++|++. .|++|++|||.  .+.|+..
T Consensus       198 i~~e~~yPY~~~-~~~C~~~~~~~~~~i~~~~~v~~~~e~~lk~al~~~GPV~v~i~a~~~f~~Y~~Gvy~--~~~c~~~  274 (331)
T 3qj3_A          198 IDSEGAYPYEMA-DGNCHYDPNQVAARLSGYVYLSGPDENMLADMVATKGPVAVAFDADDPFGSYSGGVYY--NPTCETN  274 (331)
T ss_dssp             EEBTTTSCCCSS-CCCCCCCTTSEEECCSEEEEESSCCHHHHHHHHHHHCCEEEEECCCTTGGGEEEEEEC--CTTCCSS
T ss_pred             cCcccccCccCC-CCCCCCCcccceeEeeEEEEeCCCCHHHHHHHHHhCCCEEEEEEcccccccccCceEe--CCCCCCC
Confidence            344667777654 34564321            12236778999999999999999994 49999999986  4578766


Q ss_pred             CCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcEEEEEccC-CCCccCCCC
Q psy282          178 DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEHTL-RSHLTHDIP  228 (233)
Q Consensus       178 ~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy~~i~~~~-~~~~~~~~~  228 (233)
                      .++|||+|||||++++++|||||||||++|||+|||||+|+. +.|.++..+
T Consensus       275 ~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~  326 (331)
T 3qj3_A          275 KFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIARNANNHCGIAGVA  326 (331)
T ss_dssp             CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSC
T ss_pred             cCCEEEEEEEEeccCCceEEEEEcCCCCCcCCCCEEEEEcCCCCccCcCCce
Confidence            799999999999999999999999999999999999999998 555444433

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} SCOP: d.3.1.0 PDB: 3s3q_A* 3s3r_A*

Probab=99.94  E-value=1.2e-27  Score=203.14  Aligned_cols=94  Identities=26%  Similarity=0.580  Sum_probs=85.3

Q ss_pred             EEeC-CHHHHHHHHHhcCCEEEEEec-CCCCCcCCceeeCCCCCCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCC
Q psy282           37 LHFN-GSETMKKILYKYGPLSVLLNS-DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPD  114 (233)
Q Consensus        37 ~~v~-~~~~i~~~l~~~GPv~v~i~~-~~f~~y~~Gi~~~~~~~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge  114 (233)
                      ..++ ++++||++|+++|||+++|++ .+|++|++|||..+   |....++|||+|||||.+++.+|||||||||+.|||
T Consensus       153 ~~~~~~~~~i~~~l~~~gPv~~~~~~~~~f~~y~~Gi~~~~---~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~  229 (254)
T 3qsd_A          153 YNVKNDEKAIQKEIMKYGPVEAGFTVYEDFLNYKSGIYKHI---TGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWGE  229 (254)
T ss_dssp             EECCSCHHHHHHHHHHHCCEEEEEEEEGGGGGCCSSEECCC---SSCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTB
T ss_pred             EecCCcHHHHHHHHHHcCCEEEEEEeccccccccCCeeccC---CCCCCCCeEEEEEEEeecCCeeEEEEEeCCCCCccc
Confidence            3455 999999999999999999999 49999999999876   445567999999999999999999999999999999


Q ss_pred             CcceeeeccccccCccccc
Q psy282          115 EGFFKIERGNNACGKDFLH  133 (233)
Q Consensus       115 ~gy~~~~~~~~~Cgi~~~~  133 (233)
                      +||+|+.|+.+.|+|++..
T Consensus       230 ~Gy~~i~rg~n~CgI~~~~  248 (254)
T 3qsd_A          230 NGYFRIVRGRDECSIESEV  248 (254)
T ss_dssp             TTEEEEECSSCGGGTTSSE
T ss_pred             CCeEEEEcCCCeecCCCce
Confidence            9999999999999998754

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} SCOP: d.3.1.1 PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ...

Probab=99.94  E-value=3.5e-28  Score=201.95  Aligned_cols=91  Identities=29%  Similarity=0.641  Sum_probs=78.1

Q ss_pred             cCccceeeeeecccceEEEEecc--ccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcE
Q psy282          135 NGSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF  212 (233)
Q Consensus       135 ~~e~~i~~~l~~~GPv~v~i~~~--~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy  212 (233)
                      .++++|+++|.++|||+++|++.  .|++|++|||.  .+.| ...++|||+|||||++++++|||||||||++|||+||
T Consensus       120 ~~~~~ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~--~~~~-~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~Gy  196 (218)
T 3ovx_A          120 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYY--EPSC-TQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGY  196 (218)
T ss_dssp             TCHHHHHHHHHHTCCEEEEECCCSHHHHHCCSSEEC--CTTC-CSCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTE
T ss_pred             CCHHHHHHHHHhcCCEEEEEEecchhhhcccCceec--CCCC-CcccCcEEEEEEEeccCCceEEEEECCCCCccccCCE
Confidence            35678999999999999999984  69999999986  4467 4478999999999999999999999999999999999


Q ss_pred             EEEEccC-CCCccCCCC
Q psy282          213 FKIEHTL-RSHLTHDIP  228 (233)
Q Consensus       213 ~~i~~~~-~~~~~~~~~  228 (233)
                      |||+|+. +.|-+...+
T Consensus       197 ~~i~~~~~n~cgi~~~~  213 (218)
T 3ovx_A          197 IRMARNKGNHCGIASFP  213 (218)
T ss_dssp             EEEECSSSSGGGTTTSC
T ss_pred             EEEecCCCCcccccCce
Confidence            9999997 555444333

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A

Probab=99.94  E-value=2.9e-28  Score=212.79  Aligned_cols=117  Identities=24%  Similarity=0.528  Sum_probs=91.0

Q ss_pred             CCCCCcceeeeccccccCccc------------ccccCccceeeeeecccceEEEEecc--ccccccCcceecCCCCCCC
Q psy282          111 IGPDEGFFKIERGNNACGKDF------------LHFNGSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDETCSP  176 (233)
Q Consensus       111 ~wge~gy~~~~~~~~~Cgi~~------------~~~~~e~~i~~~l~~~GPv~v~i~~~--~~~~y~~gi~~~~~~~~~~  176 (233)
                      .-.|+.|||... +..|....            ++..++++|+++|.+.|||+++|++.  .|++|++|||.  .+.|++
T Consensus       180 i~~e~~yPY~~~-~~~C~~~~~~~~~~i~~~~~v~~~~~~~i~~al~~~GPV~v~i~~~~~~f~~Y~~Gvy~--~~~c~~  256 (314)
T 1by8_A          180 IDSEDAYPYVGQ-EESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYY--DESCNS  256 (314)
T ss_dssp             BCBTTTSCCCSS-CCCCCCCGGGCCBCCSCEEECCSSCHHHHHHHHHHHCCEEEEECCCSHHHHTEEEECBC--CTTCCS
T ss_pred             cCcHhhCCCCCC-CCCcCCCCccceeEECcEEEecCCCHHHHHHHHHHcCCEEEEEEeChHHhhhccCceec--CCCCCC
Confidence            444666776543 24554321            12236778999999999999999995  79999999986  446887


Q ss_pred             CCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcEEEEEccC-CCCccCCCCCC
Q psy282          177 YDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEHTL-RSHLTHDIPGV  230 (233)
Q Consensus       177 ~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy~~i~~~~-~~~~~~~~~~~  230 (233)
                      ..++|||+|||||++++++|||||||||++|||+|||||+|+. +.|.+...+-.
T Consensus       257 ~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~~~  311 (314)
T 1by8_A          257 DNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASF  311 (314)
T ss_dssp             SCCCEEEEEEEEEEETTEEEEEEECSBTTTSTBTTEEEECCSSSCGGGTTSSCEE
T ss_pred             CCCCeEEEEEEEeccCCceEEEEEcCCCCCcCcCCEEEEEcCCCCcCCccCeeEE
Confidence            6789999999999999999999999999999999999999996 55544444433

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A*

Probab=99.94  E-value=2.2e-28  Score=203.48  Aligned_cols=92  Identities=33%  Similarity=0.603  Sum_probs=79.8

Q ss_pred             cCccceeeeeecccceEEEEecc-ccccccCcceecCCCCCCCC--CCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCc
Q psy282          135 NGSETMKKILYKYGPLSVGLNSH-LIHFYNGTPIRKNDETCSPY--DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEG  211 (233)
Q Consensus       135 ~~e~~i~~~l~~~GPv~v~i~~~-~~~~y~~gi~~~~~~~~~~~--~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~G  211 (233)
                      .++++|+++|.++|||+++|++. .|++|++||+.  ...|...  .++|||+|||||++++++|||||||||+.|||+|
T Consensus       119 ~~~~~ik~~l~~~gPV~~~~~~~~~f~~Y~~Giy~--~~~~~~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~G  196 (220)
T 8pch_A          119 NDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYS--STSCHKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNG  196 (220)
T ss_dssp             TCHHHHHHHHHHTCCEEEEECCCHHHHTCCSSEEC--CSSCCCSTTTCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTT
T ss_pred             CCHHHHHHHHHhcCCEEEEEEeccchhhcCCCccc--CCcCCCCCCcCCcEEEEEEEEccCCeeEEEEECCCCcCcccCC
Confidence            45778999999999999999995 79999999986  4467543  6899999999999999999999999999999999


Q ss_pred             EEEEEccCCCCccCCCC
Q psy282          212 FFKIEHTLRSHLTHDIP  228 (233)
Q Consensus       212 y~~i~~~~~~~~~~~~~  228 (233)
                      ||||+|+.+.|-+...+
T Consensus       197 y~~i~r~~n~cgi~~~~  213 (220)
T 8pch_A          197 YFLIERGKNMCGLAACA  213 (220)
T ss_dssp             EEEEECSSCGGGTTTSC
T ss_pred             EEEEEcCCCccccCCCc
Confidence            99999998766554444

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} SCOP: d.3.1.0 PDB: 4hwy_A* 3mor_A*

Probab=99.94  E-value=1.7e-28  Score=214.98  Aligned_cols=94  Identities=30%  Similarity=0.544  Sum_probs=78.5

Q ss_pred             cCccceeeeeecccceEEEEec-cccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcEE
Q psy282          135 NGSETMKKILYKYGPLSVGLNS-HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFF  213 (233)
Q Consensus       135 ~~e~~i~~~l~~~GPv~v~i~~-~~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy~  213 (233)
                      .++++|+++|.++|||+++|++ .+|++|++|||.   ..|....++|||+|||||++++++|||||||||+.|||+|||
T Consensus       216 ~~~~~i~~~i~~~GPV~v~i~~~~~f~~Y~~GVy~---~~~~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~GY~  292 (325)
T 3hhi_A          216 QGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYH---HVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYF  292 (325)
T ss_dssp             CSHHHHHHHHHHHCCEEEEEEEEHHHHTCCSSEEC---CCSCCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEE
T ss_pred             CCHHHHHHHHHHCCCEEEEEEeccccccccCceec---CCCCCCCCCEEEEEEEEEecCCceEEEEEeCCCCCcccCCEE
Confidence            4677899999999999999999 479999999985   335444579999999999999999999999999999999999


Q ss_pred             EEEccCCCCcc-----CCCCCCC
Q psy282          214 KIEHTLRSHLT-----HDIPGVP  231 (233)
Q Consensus       214 ~i~~~~~~~~~-----~~~~~~~  231 (233)
                      ||+|+.+.|.+     .++|.+|
T Consensus       293 ~i~rg~n~CGI~~~~~~g~p~~~  315 (325)
T 3hhi_A          293 LIRRGSSECGIEDGGSAGIPLAP  315 (325)
T ss_dssp             EEECSSCGGGTTSCEEEEEEC--
T ss_pred             EEEcCCCeecCccceEEeecCCC
Confidence            99998655433     4555543

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A*

Probab=99.94  E-value=8.7e-28  Score=203.09  Aligned_cols=83  Identities=31%  Similarity=0.659  Sum_probs=74.4

Q ss_pred             cCccceeeeeec---ccceEEEEeccccccccCcceecCCCCCCCCC-CCEEEEEEEeeecCCcCEEEEEcCCCCCCCCC
Q psy282          135 NGSETMKKILYK---YGPLSVGLNSHLIHFYNGTPIRKNDETCSPYD-LGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDE  210 (233)
Q Consensus       135 ~~e~~i~~~l~~---~GPv~v~i~~~~~~~y~~gi~~~~~~~~~~~~-~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~  210 (233)
                      .++++|+++|.+   +|||+++|+++.|++|++|||.  ...|++.. ++|||+|||||++++++|||||||||++|||+
T Consensus       120 ~~~~~ik~~l~~~~~~GPV~v~i~~~~f~~Y~~Giy~--~~~c~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~  197 (246)
T 2b1m_A          120 STESEAESSLQSFVLEQPISVSIDAKDFHFYSGGIYD--GGNCSSPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWGID  197 (246)
T ss_dssp             SCHHHHHHHHHHHHHHSCEEEEECCTTGGGCCSSEEC--CTTCCSSCCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBT
T ss_pred             ChHHHHHHHHHhhccCCCEEEEEEcchhhcccceeec--CCCCCCCCcCceEEEEEEEeccCCceEEEEEeCCCCcccCC
Confidence            356789999988   6999999999889999999986  33687654 89999999999999999999999999999999


Q ss_pred             cEEEEEccC
Q psy282          211 GFFKIEHTL  219 (233)
Q Consensus       211 Gy~~i~~~~  219 (233)
                      |||||+|+.
T Consensus       198 Gy~~i~~~~  206 (246)
T 2b1m_A          198 GYIRIQRNT  206 (246)
T ss_dssp             TEEEEECCS
T ss_pred             cEEEEEcCC
Confidence            999999997

>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X

Probab=99.94  E-value=4.5e-27  Score=200.67  Aligned_cols=126  Identities=30%  Similarity=0.622  Sum_probs=98.6

Q ss_pred             CCCCCCCCCCCCC--CCCccccccCCC-----------------ceeEEeCCceEEeC------C----HHHHHHHHHhc
Q psy282            2 GLESEKDYPYKNA--NGEKFKCAYDKS-----------------KVKLFTGKDFLHFN------G----SETMKKILYKY   52 (233)
Q Consensus         2 Gi~~e~~yPY~~~--~~~~~~C~~~~~-----------------~~~~~i~~~~~~v~------~----~~~i~~~l~~~   52 (233)
                      ||++|++|||.+.  .+   .|+....                 ...+++.+ |..++      +    +++||++|+++
T Consensus        92 gi~~e~~yPY~~~~~~~---~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~~~~~ik~~i~~~  167 (265)
T 2wbf_X           92 FLPAESNYPYNYVKVGE---QCPKVEDHWMNLWDNGKILHNKNEPNSLDGKG-YTAYESERFHDNMDAFVKIIKTEVMNK  167 (265)
T ss_dssp             CCCBTTTSCCCGGGTTS---CCCCCCTTCCCTTTTCEECCCCCSSSTTCCSS-EEEEEGGGGTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCccccCCcCCCCCC---CCCCccccccccccccccccccCCCceeecCC-ceEeeccccccchhhHHHHHHHHHHhc
Confidence            3899999999864  34   6875332                 12346777 77765      2    47899999999


Q ss_pred             CCEEEEEecCCCCCcC-CceeeCCCCCCCCCCCCcEEEEEeeecc---CC--ccEEEEecCCCCCCCCCcceeeec-ccc
Q psy282           53 GPLSVLLNSDLIHDYN-GTPIRKNDETCSPYDLGHAVLLVGYGKQ---DD--IPYWLVRNSWGPIGPDEGFFKIER-GNN  125 (233)
Q Consensus        53 GPv~v~i~~~~f~~y~-~Gi~~~~~~~c~~~~~~H~v~ivG~g~~---~~--~~ywivknswg~~wge~gy~~~~~-~~~  125 (233)
                      |||+++|+++.|+.|+ +|++...  .|+...+||||+|||||.+   ++  .+|||||||||+.|||+||+|+.+ +.+
T Consensus       168 GPV~v~i~~~~f~~y~~~g~~~~~--~c~~~~~~HaV~iVGyG~~~~~~g~~~~YWivkNSWG~~WGe~GY~ri~~~g~n  245 (265)
T 2wbf_X          168 GSVIAYIKAENVMGYEFSGKKVKN--LCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPT  245 (265)
T ss_dssp             SCEEEEECGGGGCSGGGGSSSEEC--CCCCSCCCEEEEEEEEEEEECTTSCEEEEEEEECSBCTTSTBTTEEEEESSCCT
T ss_pred             CCEEEEEEcccccccccCCcEEcC--CCCCCcCCEEEEEEEEeCCcccCCCcCCEEEEEcCCCCccCCCCEEEEEecCCC
Confidence            9999999997777774 5554333  3877778999999999985   55  699999999999999999999986 468


Q ss_pred             ccCccccc
Q psy282          126 ACGKDFLH  133 (233)
Q Consensus       126 ~Cgi~~~~  133 (233)
                      .|+++...
T Consensus       246 ~Cgi~~~~  253 (265)
T 2wbf_X          246 HCHFNFIH  253 (265)
T ss_dssp             TCSSCSCC
T ss_pred             ccCcceeE
Confidence            99987653

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica}

Probab=99.94  E-value=3e-28  Score=212.33  Aligned_cols=110  Identities=25%  Similarity=0.518  Sum_probs=88.8

Q ss_pred             CCCCCcceeeeccccccCccc------------ccccCccceeeeeecccceEEEEecc-ccccccCcceecCCCCCCCC
Q psy282          111 IGPDEGFFKIERGNNACGKDF------------LHFNGSETMKKILYKYGPLSVGLNSH-LIHFYNGTPIRKNDETCSPY  177 (233)
Q Consensus       111 ~wge~gy~~~~~~~~~Cgi~~------------~~~~~e~~i~~~l~~~GPv~v~i~~~-~~~~y~~gi~~~~~~~~~~~  177 (233)
                      .-.|+.|||... +..|....            ++..++++|+++|.+.|||+++|++. .|++|++|||.  ++.|+..
T Consensus       173 i~~e~~yPY~~~-~~~C~~~~~~~~~~i~~~~~v~~~~~~~i~~~l~~~GPV~v~i~~~~~f~~Y~~Gvy~--~~~c~~~  249 (310)
T 2o6x_A          173 LETESSYPYTAV-EGQCRYNKQLGVAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVESDFMMYRSGIYQ--SQTCSPL  249 (310)
T ss_dssp             BCBTTTSCCCSS-CCCCCCCGGGCCEEEEEEEEECSCCHHHHHHHHHHHCCEEEEECCCHHHHTEEEEEEC--CSSCCTT
T ss_pred             cCchhcCCCCCC-CCCccCCCCCCceEeCeEEEeCCCCHHHHHHHHHhcCCeEEEEecchhhhhCCCceec--CCCCCCC
Confidence            445677777553 34565321            11236778999999999999999995 79999999986  4568866


Q ss_pred             CCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcEEEEEccC-CCCc
Q psy282          178 DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEHTL-RSHL  223 (233)
Q Consensus       178 ~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy~~i~~~~-~~~~  223 (233)
                      .++|||+|||||++++++|||||||||+.|||+|||||+|+. +.|.
T Consensus       250 ~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~Cg  296 (310)
T 2o6x_A          250 RVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGYIRMVRNRGNMCG  296 (310)
T ss_dssp             CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSSGGG
T ss_pred             CCCEEEEEEEEeccCCceEEEEEeCCCCccCCCcEEEEEcCCCCcCC
Confidence            789999999999999999999999999999999999999997 4443

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ...

Probab=99.94  E-value=7.3e-28  Score=200.36  Aligned_cols=89  Identities=31%  Similarity=0.590  Sum_probs=77.1

Q ss_pred             CccceeeeeecccceEEEEecc--ccccccCcceecCCCCCCCCCCCEEEEEEEee----ecCCcCEEEEEcCCCCCCCC
Q psy282          136 GSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGPD  209 (233)
Q Consensus       136 ~e~~i~~~l~~~GPv~v~i~~~--~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~----~~~~~~ywivkNSWg~~WG~  209 (233)
                      ++++|+++|.++|||+++|++.  .|++|++|||.  .+.|+...++|||+|||||    ++++++|||||||||++|||
T Consensus       118 ~~~~ik~~l~~~GPV~v~~~~~~~~f~~Y~~Gvy~--~~~c~~~~~~HaV~iVGygd~~~~~~g~~yWivkNSWG~~WG~  195 (220)
T 2xu3_A          118 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYF--EPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGM  195 (220)
T ss_dssp             CHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEEC--CTTCCSSCCCEEEEEEEEEECCCSSSCCEEEEEECSBCTTSTB
T ss_pred             CHHHHHHHHHhcCCEEEEEeecCcccccccceEEc--CCCCCCCCCCeEEEEEEcCCccccCCCCcEEEEEeCCCCCccc
Confidence            6778999999999999999985  69999999986  3458766789999999999    67789999999999999999


Q ss_pred             CcEEEEEccC-CCCccCC
Q psy282          210 EGFFKIEHTL-RSHLTHD  226 (233)
Q Consensus       210 ~Gy~~i~~~~-~~~~~~~  226 (233)
                      +|||||+|+. +.|-+..
T Consensus       196 ~Gy~~i~~~~~n~Cgi~~  213 (220)
T 2xu3_A          196 GGYVKMAKDRRNHCGIAS  213 (220)
T ss_dssp             TTEEEEECSSSSGGGTTT
T ss_pred             CcEEEEecCCCCcCCccc
Confidence            9999999997 4443333

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A

Probab=99.94  E-value=7e-28  Score=210.56  Aligned_cols=87  Identities=29%  Similarity=0.523  Sum_probs=76.4

Q ss_pred             cCccceeeeeecccceEEEEec-cccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcEE
Q psy282          135 NGSETMKKILYKYGPLSVGLNS-HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFF  213 (233)
Q Consensus       135 ~~e~~i~~~l~~~GPv~v~i~~-~~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy~  213 (233)
                      .++++|+++|.++|||+++|++ ..|++|++|||.   ..|+...++|||+|||||++++++|||||||||+.|||+|||
T Consensus       218 ~~e~~i~~~i~~~GPV~v~i~~~~~f~~Y~~GVy~---~~~~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~GY~  294 (317)
T 3pbh_A          218 NSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQ---HVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFF  294 (317)
T ss_dssp             SCHHHHHHHHHHHCCEEEEEEEEGGGGGEEEEEEC---CCSCCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEE
T ss_pred             cHHHHHHHHHHHCCCEEEEEEecccccCCCCcEEc---cCCCCCCCCEEEEEEEEEEeCCeeEEEEEcCCCCCcCCCcEE
Confidence            3577899999999999999999 589999999985   346655669999999999999999999999999999999999


Q ss_pred             EEEccCCCCcc
Q psy282          214 KIEHTLRSHLT  224 (233)
Q Consensus       214 ~i~~~~~~~~~  224 (233)
                      ||+|+.+.|.+
T Consensus       295 ri~rg~n~CgI  305 (317)
T 3pbh_A          295 KILRGQDHCGI  305 (317)
T ss_dssp             EEECSSCGGGT
T ss_pred             EEEcCCCcccC
Confidence            99998665433

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ...

Probab=99.94  E-value=1.1e-27  Score=204.66  Aligned_cols=87  Identities=29%  Similarity=0.523  Sum_probs=75.9

Q ss_pred             cCccceeeeeecccceEEEEec-cccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcEE
Q psy282          135 NGSETMKKILYKYGPLSVGLNS-HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFF  213 (233)
Q Consensus       135 ~~e~~i~~~l~~~GPv~v~i~~-~~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy~  213 (233)
                      .++++|+++|.++|||+++|++ ..|++|++|||.   ..|+...++|||+|||||++++++|||||||||+.|||+|||
T Consensus       161 ~~~~~i~~~i~~~GPV~v~i~~~~~f~~Y~~Gvy~---~~~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~  237 (266)
T 3cbj_A          161 NSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQ---HVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFF  237 (266)
T ss_dssp             SCHHHHHHHHHHHCCEEEEEEEEGGGGGCCSSEEC---CCSSCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEE
T ss_pred             CCHHHHHHHHHhcCCEEEEEEeccchhhcCCeEEe---cCCCCccCCeEEEEEEecccCCceEEEEEcCCCCccCCCCEE
Confidence            3577899999999999999999 579999999985   235554569999999999999999999999999999999999


Q ss_pred             EEEccCCCCcc
Q psy282          214 KIEHTLRSHLT  224 (233)
Q Consensus       214 ~i~~~~~~~~~  224 (233)
                      ||+|+.+.+.+
T Consensus       238 ~i~rg~n~cgI  248 (266)
T 3cbj_A          238 KILRGQDHCGI  248 (266)
T ss_dssp             EEECSSCGGGT
T ss_pred             EEEcCCCcccc
Confidence            99998765533

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens}

Probab=99.94  E-value=7.7e-28  Score=210.13  Aligned_cols=91  Identities=29%  Similarity=0.652  Sum_probs=78.8

Q ss_pred             cCccceeeeeecccceEEEEecc--ccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcE
Q psy282          135 NGSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF  212 (233)
Q Consensus       135 ~~e~~i~~~l~~~GPv~v~i~~~--~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy  212 (233)
                      .++++|+++|.++|||+++|++.  .|++|++|||.  .+.|++ .++|||+|||||++++++|||||||||++|||+||
T Consensus       217 ~~~~~i~~al~~~GPV~v~i~~~~~~f~~Y~~Gvy~--~~~c~~-~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY  293 (315)
T 2c0y_A          217 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYY--EPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGY  293 (315)
T ss_dssp             TCHHHHHHHHHHTCCEEEEECCCSHHHHTEEEEEEC--CTTCCS-CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTE
T ss_pred             CCHHHHHHHHHHcCCEEEEEecCchhhhccCCCccc--CCCCCC-cCCEEEEEEEEeecCCCcEEEEEcCCCCCcCCCcE
Confidence            36778999999999999999995  69999999986  446877 78999999999999999999999999999999999


Q ss_pred             EEEEccC-CCCccCCCC
Q psy282          213 FKIEHTL-RSHLTHDIP  228 (233)
Q Consensus       213 ~~i~~~~-~~~~~~~~~  228 (233)
                      |||+|+. +.|.+...+
T Consensus       294 ~~i~r~~~n~CgI~~~~  310 (315)
T 2c0y_A          294 IRMARNKGNHCGIASFP  310 (315)
T ss_dssp             EEEECSSSSGGGTTTSC
T ss_pred             EEEEcCCCCccCcCcee
Confidence            9999996 545444333

>3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya}

Probab=99.94  E-value=6.2e-27  Score=207.30  Aligned_cols=120  Identities=28%  Similarity=0.513  Sum_probs=99.0

Q ss_pred             CCCCCCCCCCCCCCCCCccccccCC-CceeEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEecC--CCCCcCCceeeCC
Q psy282            1 MGLESEKDYPYKNANGEKFKCAYDK-SKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKN   75 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~C~~~~-~~~~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~~--~f~~y~~Gi~~~~   75 (233)
                      +||++|++|||.+.++   .|.... .....++.+ +..++  ++..|+.+|++ |||+|+|++.  +|++|++|||..+
T Consensus       229 ~Gi~~e~~yPY~~~~~---~c~~~~~~~~~~~~~~-~~~~~~~~e~~l~~~v~~-gPvsvai~a~~~~F~~Y~sGVy~~~  303 (363)
T 3tnx_A          229 YGIHYRNTYPYEGVQR---YCRSREKGPYAAKTDG-VRQVQPYNEGALLYSIAN-QPVSVVLEAAGKDFQLYRGGIFVGP  303 (363)
T ss_dssp             TCBCBTTTSCCCSSCC---CCCGGGGCSCSBCCCE-EEEECSSCHHHHHHHHTT-SCEEEEECCCSHHHHTEEEEEECCC
T ss_pred             cCccccccCCCcCcCC---CcccCCCCCceeeccc-eEEcchhhHHHHHHHHHc-CCcEEEEEecchhhhCCCCCEECCC
Confidence            5899999999999888   665433 334456667 77776  78888888775 9999999984  8999999999876


Q ss_pred             CCCCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccc----cccCccccc
Q psy282           76 DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN----NACGKDFLH  133 (233)
Q Consensus        76 ~~~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~----~~Cgi~~~~  133 (233)
                         |+. .+||||+|||||+    +|||||||||+.|||+||+|+.|+.    +.|+|.+.+
T Consensus       304 ---~~~-~lnHaV~iVGyG~----~YWIVKNSWGt~WGe~GY~rI~Rg~~~~~~~CGI~~~a  357 (363)
T 3tnx_A          304 ---CGN-KVDHAVAAVGYGP----NYILIRNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSS  357 (363)
T ss_dssp             ---CCS-CCCEEEEEEEEET----TEEEEECSBCTTSTBTTEEEEECCSCCSSCGGGTTSCE
T ss_pred             ---CCC-CCCeEEEEEEcCC----CcEEEEeCCCCccccCcEEEEEcCCCCCCCcCCcccee
Confidence               654 5799999999985    5999999999999999999999986    459997654

>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein, hydrola protease, secreted, thiol protease; HET: P6G; 1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A 3rvw_A* 3rvx_A 3rvv_A* 3d6s_A*

Probab=99.94  E-value=1.1e-27  Score=199.39  Aligned_cols=93  Identities=23%  Similarity=0.418  Sum_probs=79.0

Q ss_pred             cCccceeeeeec-ccceEEEEecc---ccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCC
Q psy282          135 NGSETMKKILYK-YGPLSVGLNSH---LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDE  210 (233)
Q Consensus       135 ~~e~~i~~~l~~-~GPv~v~i~~~---~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~  210 (233)
                      .++++|+++|.+ +|||+++|++.   .|++|++|++.  ...|....++|||+|||||++++++|||||||||+.|||+
T Consensus       122 ~~~~~ik~~l~~~~gpV~v~~~~~~~~~f~~Y~~gi~~--~~~~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WGe~  199 (222)
T 3f5v_A          122 PNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTII--QRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDN  199 (222)
T ss_dssp             CCHHHHHHHHHHHCCCEEEEEEESCHHHHHTCCSSSCB--CCCCSSSCEEEEEEEEEEEEETTEEEEEEECSBCTTSTBT
T ss_pred             CCHHHHHHHHHhcCCCEEEEEEeccchhhhccCCCcee--cCCCCCCccCcEEEEEEEeccCCCEEEEEEcCCCCCcccC
Confidence            467789999998 89999999982   69999999875  2345556789999999999999999999999999999999


Q ss_pred             cEEEEEccCCCCccCCCCC
Q psy282          211 GFFKIEHTLRSHLTHDIPG  229 (233)
Q Consensus       211 Gy~~i~~~~~~~~~~~~~~  229 (233)
                      |||||+|+.+.|.+...+-
T Consensus       200 Gy~~i~r~~n~cgi~~~~~  218 (222)
T 3f5v_A          200 GYGYFAANIDLMMIEEYPY  218 (222)
T ss_dssp             TEEEEECSSCGGGTTTSCE
T ss_pred             CEEEEEcCCCeecCCCcee
Confidence            9999999977665544443

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1

Probab=99.94  E-value=3.4e-27  Score=196.46  Aligned_cols=80  Identities=26%  Similarity=0.657  Sum_probs=71.6

Q ss_pred             CccceeeeeecccceEEEEecc--ccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcEE
Q psy282          136 GSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFF  213 (233)
Q Consensus       136 ~e~~i~~~l~~~GPv~v~i~~~--~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy~  213 (233)
                      +++.|+++|.+ |||+++|++.  .|++|++|||.   ..|++ .++|||+|||||++++++|||||||||++|||+|||
T Consensus       119 ~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~---~~~~~-~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~  193 (221)
T 1cqd_A          119 NEQSLQKAVAN-QPVSVTMDAAGRDFQLYRSGIFT---GSCNI-SANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYI  193 (221)
T ss_dssp             CHHHHHHHHTT-SCEEEEECCCSHHHHTCCSSEEC---CCCCC-CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEE
T ss_pred             hHHHHHHHHHh-CCEEEEEeccCcccccccCcccc---CCCCC-cCCeEEEEEEEcccCCCcEEEEEeCCCCCcccCCEE
Confidence            56788999865 9999999985  79999999985   35775 589999999999999999999999999999999999


Q ss_pred             EEEccCC
Q psy282          214 KIEHTLR  220 (233)
Q Consensus       214 ~i~~~~~  220 (233)
                      ||+|+.+
T Consensus       194 ~i~r~~~  200 (221)
T 1cqd_A          194 RAERNIE  200 (221)
T ss_dssp             EEECSCS
T ss_pred             EEEcCCC
Confidence            9999863

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1

Probab=99.93  E-value=1.6e-27  Score=207.77  Aligned_cols=88  Identities=23%  Similarity=0.448  Sum_probs=77.4

Q ss_pred             cCccceeeeeec-ccceEEEEecc---ccccccCcceecCCCCCC-CCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCC
Q psy282          135 NGSETMKKILYK-YGPLSVGLNSH---LIHFYNGTPIRKNDETCS-PYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPD  209 (233)
Q Consensus       135 ~~e~~i~~~l~~-~GPv~v~i~~~---~~~~y~~gi~~~~~~~~~-~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~  209 (233)
                      .++++|+++|.+ .|||+++|++.   .|++|++|||.  .+.|+ ... +|||+|||||++++++|||||||||++|||
T Consensus       202 ~~~~~ik~al~~~~GPV~v~i~~~~~~~f~~Y~~GVy~--~~~c~~~~~-~HaV~iVGyg~~~g~~yWivkNSWG~~WGe  278 (312)
T 1xkg_A          202 PNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTII--QRDNGYQPN-YHAVNIVGYSNAQGVDYWIVRNSWDTNWGD  278 (312)
T ss_dssp             CCHHHHHHHHHHHCCCEEEEEEESCHHHHHTCCSSSCB--CCCCSSCCE-EEEEEEEEEEEETTEEEEEEECSBCTTSTB
T ss_pred             CCHHHHHHHHHhcCCCEEEEEEecccccccccCCcEEc--CCCCCCCcC-ceEEEEEEEeccCCceEEEEEeCCCCcccC
Confidence            367889999999 99999999994   79999999986  45687 546 999999999999999999999999999999


Q ss_pred             CcEEEEEccCCCCccC
Q psy282          210 EGFFKIEHTLRSHLTH  225 (233)
Q Consensus       210 ~Gy~~i~~~~~~~~~~  225 (233)
                      +|||||+|+.+.|.++
T Consensus       279 ~GY~~i~r~~n~CgI~  294 (312)
T 1xkg_A          279 NGYGYFAANIDLMMIE  294 (312)
T ss_dssp             TTEEEEECSSCGGGTT
T ss_pred             CcEEEEEcCCCccccc
Confidence            9999999996555443

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A*

Probab=99.93  E-value=1.9e-27  Score=207.69  Aligned_cols=93  Identities=30%  Similarity=0.562  Sum_probs=79.3

Q ss_pred             CccceeeeeecccceEEEEecc--ccccccCcceecCCCCCCCCCCCEEEEEEEee---ec-CCcCEEEEEcCCCCCCCC
Q psy282          136 GSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG---KQ-DDIPYWLVRNSWGPIGPD  209 (233)
Q Consensus       136 ~e~~i~~~l~~~GPv~v~i~~~--~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~---~~-~~~~ywivkNSWg~~WG~  209 (233)
                      ++++|+++|.++|||+++|++.  .|++|++|||.  .+.|+...++|||+|||||   ++ ++++|||||||||++|||
T Consensus       214 ~~~~ik~~l~~~GPV~v~i~~~~~~f~~Y~~Gvy~--~~~c~~~~~~HaV~iVGygd~~~~~~g~~yWivkNSWG~~WGe  291 (316)
T 1cs8_A          214 QEKALMKAVATVGPISVAIDAGHESFLFYKEGIYF--EPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGM  291 (316)
T ss_dssp             CHHHHHHHHHHHCCEEEEECCCSHHHHTEEEEEEC--CTTCCSSCCCEEEEEEEEEEECCSSCCEEEEEEECSBCTTSTB
T ss_pred             CHHHHHHHHHhcCCEEEEEecCChhhccccCceEC--CCCCCCCCCCEEEEEEEecCCcccCCCCcEEEEEcCCCCCccc
Confidence            5778999999999999999995  69999999986  4468876789999999999   66 789999999999999999


Q ss_pred             CcEEEEEccC-CCCccCCCCCC
Q psy282          210 EGFFKIEHTL-RSHLTHDIPGV  230 (233)
Q Consensus       210 ~Gy~~i~~~~-~~~~~~~~~~~  230 (233)
                      +|||||+|+. +.|.++..+-.
T Consensus       292 ~GY~~i~r~~~n~CgI~~~~~~  313 (316)
T 1cs8_A          292 GGYVKMAKDRRNHCGIASAASY  313 (316)
T ss_dssp             TTEEEEECSSSSGGGTTTSCEE
T ss_pred             CCEEEEECCCCCccCccceeeE
Confidence            9999999997 44544444433

>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia arguta} SCOP: d.3.1.1 PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A

Probab=99.93  E-value=3e-27  Score=196.61  Aligned_cols=81  Identities=32%  Similarity=0.724  Sum_probs=72.2

Q ss_pred             cCccceeeeeecccceEEEEecc--ccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcE
Q psy282          135 NGSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF  212 (233)
Q Consensus       135 ~~e~~i~~~l~~~GPv~v~i~~~--~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy  212 (233)
                      .+++.|+++| .+|||+++|++.  .|++|++|||.   ..|++ .++|||+|||||++++++|||||||||+.|||+||
T Consensus       119 ~~~~~l~~~l-~~GPV~v~~~~~~~~f~~Y~~Giy~---~~~~~-~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy  193 (220)
T 3p5u_A          119 NNEWALQTAV-AYQPVSVALEAAGYNFQHYSSGIFT---GPCGT-AVDHAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGY  193 (220)
T ss_dssp             TCHHHHHHHH-TTSCEEEEECCCSHHHHTCCSSEEC---CCCCC-SCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTE
T ss_pred             CcHHHHHHHH-hcCCEEEEEecCchhhccccCceEC---CCCCC-ccceEEEEEEEecCCCceEEEEECCCCCCcccCCE
Confidence            3566788888 689999999984  69999999985   36765 47999999999999999999999999999999999


Q ss_pred             EEEEccCC
Q psy282          213 FKIEHTLR  220 (233)
Q Consensus       213 ~~i~~~~~  220 (233)
                      |||+|+.+
T Consensus       194 ~~i~r~~~  201 (220)
T 3p5u_A          194 MRIQRNVG  201 (220)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999987

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1

Probab=99.93  E-value=3.4e-27  Score=195.68  Aligned_cols=81  Identities=28%  Similarity=0.626  Sum_probs=71.7

Q ss_pred             cCccceeeeeecccceEEEEecc--ccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcE
Q psy282          135 NGSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF  212 (233)
Q Consensus       135 ~~e~~i~~~l~~~GPv~v~i~~~--~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy  212 (233)
                      .+++.|+++|.+ |||+++|++.  .|++|++|||.   ..|++ .++|||+|||||++++++|||||||||++|||+||
T Consensus       115 ~~~~~ik~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~---~~c~~-~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy  189 (215)
T 1iwd_A          115 NNESALQSAVAS-QPVSVTVEAAGAPFQHYSSGIFT---GPCGT-AQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGY  189 (215)
T ss_dssp             TCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEEC---CCCCC-CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTE
T ss_pred             CcHHHHHHHHHh-CCEEEEEecCCcchhhcCCceEC---CCCCC-cCCEEEEEEEEeccCCccEEEEEeCCCCCcCCCcE
Confidence            356788898865 9999999984  69999999985   35775 67999999999999999999999999999999999


Q ss_pred             EEEEccCC
Q psy282          213 FKIEHTLR  220 (233)
Q Consensus       213 ~~i~~~~~  220 (233)
                      |||+|+.+
T Consensus       190 ~~i~~~~~  197 (215)
T 1iwd_A          190 IWMERNVA  197 (215)
T ss_dssp             EEEECSCS
T ss_pred             EEEEcCCC
Confidence            99999973

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A*

Probab=99.93  E-value=1e-26  Score=196.20  Aligned_cols=88  Identities=28%  Similarity=0.569  Sum_probs=75.2

Q ss_pred             CccceeeeeecccceEEEEecc-ccccccCcceecCCCCCCCCCCCEEEEEEEeeecC----------CcCEEEEEcCCC
Q psy282          136 GSETMKKILYKYGPLSVGLNSH-LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD----------DIPYWLVRNSWG  204 (233)
Q Consensus       136 ~e~~i~~~l~~~GPv~v~i~~~-~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~----------~~~ywivkNSWg  204 (233)
                      ++++|+++|   |||+++|++. .|++|++|||.  . .|+.. ++|||+|||||++.          +++|||||||||
T Consensus       137 ~~~~ik~~l---GPV~v~i~~~~~f~~Y~~Giy~--~-~c~~~-~~HaV~iVGyg~~~~~~~~~~~~~g~~yWivkNSWG  209 (243)
T 3bwk_A          137 KFKEALRYL---GPISISIAASDDFAFYRGGFYD--G-ECGAA-PNHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWG  209 (243)
T ss_dssp             CHHHHHHHT---CCEEEEECCCHHHHTCCSSSCC--C-CCCSS-CCEEEEEEEEEEEEEECTTTCSEEEEEEEEEECSBC
T ss_pred             CHHHHHHhh---CCEEEEEecChhHHhcCCceec--C-CCCCc-CCeEEEEEEecCccccccccccCCCCCEEEEEeCCC
Confidence            566888888   9999999995 79999999985  2 68765 89999999999875          789999999999


Q ss_pred             CCCCCCcEEEEEccCCCCccCCCCCCCC
Q psy282          205 PIGPDEGFFKIEHTLRSHLTHDIPGVPT  232 (233)
Q Consensus       205 ~~WG~~Gy~~i~~~~~~~~~~~~~~~~~  232 (233)
                      +.|||+|||||+|+.++.  .|.|||.+
T Consensus       210 ~~WGe~Gy~~i~~~~~~~--~g~Cgi~~  235 (243)
T 3bwk_A          210 SDWGEGGYINLETDENGY--KKTCSIGT  235 (243)
T ss_dssp             TTSTBTTEEEEEECSSSC--CCSTTTTS
T ss_pred             CCcCCCcEEEEEcCCCCC--CCcCCccc
Confidence            999999999999998763  35566543

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A

Probab=99.93  E-value=8e-27  Score=196.65  Aligned_cols=87  Identities=29%  Similarity=0.563  Sum_probs=74.4

Q ss_pred             CccceeeeeecccceEEEEecc-ccccccCcceecCCCCCCCCCCCEEEEEEEeeecC----------CcCEEEEEcCCC
Q psy282          136 GSETMKKILYKYGPLSVGLNSH-LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD----------DIPYWLVRNSWG  204 (233)
Q Consensus       136 ~e~~i~~~l~~~GPv~v~i~~~-~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~----------~~~ywivkNSWg  204 (233)
                      ++++|+++|   |||+++|++. .|++|++|||.  . .|+.. ++|||+|||||++.          +++|||||||||
T Consensus       135 ~~~~ik~~l---GPV~v~i~~~~~f~~Y~~Giy~--~-~c~~~-~~HaV~iVGyg~~~~~~~~~~~~~g~~yWivkNSWG  207 (241)
T 2oul_A          135 KLKEALRFL---GPISISVAVSDDFAFYKEGIFD--G-ECGDQ-LNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWG  207 (241)
T ss_dssp             CHHHHHHHT---CCEEEEECBCHHHHTCCSSBCC--S-CBCSS-CCEEEEEEEEEEEEEECTTTCSEEEEEEEEEECSBC
T ss_pred             CHHHHHHhh---CCEEEEEecCcchhhcCCcEEc--C-cCCCC-CCEEEEEEEeccccccccccccCCCCCEEEEEeCCC
Confidence            566788888   9999999995 79999999985  2 68765 89999999999875          789999999999


Q ss_pred             CCCCCCcEEEEEccCCCCccCCCCCCC
Q psy282          205 PIGPDEGFFKIEHTLRSHLTHDIPGVP  231 (233)
Q Consensus       205 ~~WG~~Gy~~i~~~~~~~~~~~~~~~~  231 (233)
                      +.|||+|||||+|+.++.  .|.|||.
T Consensus       208 ~~WGe~Gy~~i~~~~~~~--~g~Cgi~  232 (241)
T 2oul_A          208 QQWGERGFINIETDESGL--MRKCGLG  232 (241)
T ss_dssp             TTSTBTTEEEEEECSSSC--CCGGGTT
T ss_pred             CCcccCCEEEEEcCCCCC--CCcCCcc
Confidence            999999999999998763  3555553

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} SCOP: d.3.1.0 PDB: 3s3q_A* 3s3r_A*

Probab=99.93  E-value=5.1e-27  Score=199.26  Aligned_cols=84  Identities=26%  Similarity=0.572  Sum_probs=74.7

Q ss_pred             CccceeeeeecccceEEEEec-cccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcEEE
Q psy282          136 GSETMKKILYKYGPLSVGLNS-HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK  214 (233)
Q Consensus       136 ~e~~i~~~l~~~GPv~v~i~~-~~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy~~  214 (233)
                      ++++|+++|.++|||+++|++ ..|++|++||+.   ..|....++|||+|||||++++++|||||||||+.|||+||||
T Consensus       158 ~~~~i~~~l~~~gPv~~~~~~~~~f~~y~~Gi~~---~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~  234 (254)
T 3qsd_A          158 DEKAIQKEIMKYGPVEAGFTVYEDFLNYKSGIYK---HITGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFR  234 (254)
T ss_dssp             CHHHHHHHHHHHCCEEEEEEEEGGGGGCCSSEEC---CCSSCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEE
T ss_pred             cHHHHHHHHHHcCCEEEEEEeccccccccCCeec---cCCCCCCCCeEEEEEEEeecCCeeEEEEEeCCCCCcccCCeEE
Confidence            677899999999999999999 589999999985   2344445799999999999999999999999999999999999


Q ss_pred             EEccCCCC
Q psy282          215 IEHTLRSH  222 (233)
Q Consensus       215 i~~~~~~~  222 (233)
                      |+|+.+.+
T Consensus       235 i~rg~n~C  242 (254)
T 3qsd_A          235 IVRGRDEC  242 (254)
T ss_dssp             EECSSCGG
T ss_pred             EEcCCCee
Confidence            99987654

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} SCOP: d.3.1.0

Probab=99.93  E-value=4.9e-27  Score=195.61  Aligned_cols=84  Identities=30%  Similarity=0.629  Sum_probs=73.6

Q ss_pred             cCccceeeeeecccceEEEEecc--ccccccC-cceecCCCCCCC--CCCCEEEEEEEeeecC-CcCEEEEEcCCCCCCC
Q psy282          135 NGSETMKKILYKYGPLSVGLNSH--LIHFYNG-TPIRKNDETCSP--YDLGHAVLLVGYGKQD-DIPYWLVRNSWGPIGP  208 (233)
Q Consensus       135 ~~e~~i~~~l~~~GPv~v~i~~~--~~~~y~~-gi~~~~~~~~~~--~~~~Hav~iVGy~~~~-~~~ywivkNSWg~~WG  208 (233)
                      .++++|+++| .+|||+++|++.  .|++|++ |||.  ...|..  ..++|||+|||||+++ +++|||||||||+.||
T Consensus       114 ~~~~~i~~~l-~~GPV~v~i~~~~~~f~~Y~~~Giy~--~~~~~~~~~~~~HaV~iVGyg~~~~g~~yWivkNSWG~~WG  190 (222)
T 3u8e_A          114 NSSSALLDAV-AKQPVSVNIYTSSTSFQLYTGPGIFA--GSSCSDDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWG  190 (222)
T ss_dssp             SCHHHHHHHH-HHSCEEEEECCCSHHHHTCCCSSCBC--CTTCCCCGGGCCEEEEEEEEEESSTTCEEEEEECSBCTTST
T ss_pred             CcHHHHHHHH-hCCCEEEEEEecChhhhcEeCCceEC--CCcccCCCCcCCEEEEEEEEeecCCCCcEEEEECCCCCCcc
Confidence            4677899999 679999999994  7999999 9986  336765  3679999999999987 8999999999999999


Q ss_pred             CCcEEEEEccCCC
Q psy282          209 DEGFFKIEHTLRS  221 (233)
Q Consensus       209 ~~Gy~~i~~~~~~  221 (233)
                      |+|||||+|+.++
T Consensus       191 e~Gy~~i~r~~~~  203 (222)
T 3u8e_A          191 IDGYILIRRNTNR  203 (222)
T ss_dssp             BTTEEEEECSCSC
T ss_pred             cCCEEEEEcCCCC
Confidence            9999999999873

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A*

Probab=99.93  E-value=4.7e-27  Score=194.98  Aligned_cols=81  Identities=31%  Similarity=0.600  Sum_probs=71.9

Q ss_pred             cCccceeeeeecccceEEEEecc--ccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcE
Q psy282          135 NGSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF  212 (233)
Q Consensus       135 ~~e~~i~~~l~~~GPv~v~i~~~--~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy  212 (233)
                      .+++.|+++|.+ |||+++|++.  .|++|++|||.   ..|++ .++|||+|||||++++++|||||||||++|||+||
T Consensus       116 ~~~~~i~~~l~~-GPV~v~~~~~~~~f~~Y~~Giy~---~~~~~-~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~Gy  190 (216)
T 1ppo_A          116 NNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFE---GPCGT-KVDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGY  190 (216)
T ss_dssp             SCHHHHHHHHHH-SCEEEEECCCSHHHHHCCSSEEC---CSCCS-CCCEEEEEEEEEEETTEEEEEEECSBCSSSTBTTE
T ss_pred             CCHHHHHHHHHh-CCEEEEEecCChhhhhcCCceEC---CCCCC-CCCEEEEEEEeeccCCccEEEEEeCCCCCcccCcE
Confidence            356789999976 9999999993  79999999985   35776 47999999999999999999999999999999999


Q ss_pred             EEEEccCC
Q psy282          213 FKIEHTLR  220 (233)
Q Consensus       213 ~~i~~~~~  220 (233)
                      |||+|+.+
T Consensus       191 ~~i~~~~~  198 (216)
T 1ppo_A          191 IRIKRAPG  198 (216)
T ss_dssp             EEEECCCS
T ss_pred             EEEEcCCC
Confidence            99999973

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E*

Probab=99.93  E-value=5.5e-27  Score=194.84  Aligned_cols=80  Identities=29%  Similarity=0.569  Sum_probs=71.4

Q ss_pred             CccceeeeeecccceEEEEecc--ccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcEE
Q psy282          136 GSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFF  213 (233)
Q Consensus       136 ~e~~i~~~l~~~GPv~v~i~~~--~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy~  213 (233)
                      +++.|+++|.+ |||+++|++.  .|++|++|||.   ..|++ .++|||+|||||++++++|||||||||+.|||+|||
T Consensus       117 ~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~---~~~~~-~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~  191 (218)
T 1yal_A          117 CETSFLGALAN-QPLSVLVEAGGKPFQLYKSGVFD---GPCGT-KLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYM  191 (218)
T ss_dssp             BHHHHHHHHTT-SCEEEEECCCSHHHHTCCSSEEC---CSCCS-CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEE
T ss_pred             CHHHHHHHHHh-CCEEEEEeccchhccccCCceEC---CCCCC-CCCEEEEEEEeeccCCccEEEEEeCCCCCcccCcEE
Confidence            56788999976 9999999994  79999999985   35776 479999999999999999999999999999999999


Q ss_pred             EEEccCC
Q psy282          214 KIEHTLR  220 (233)
Q Consensus       214 ~i~~~~~  220 (233)
                      ||+|+.+
T Consensus       192 ~i~~~~~  198 (218)
T 1yal_A          192 RLKRQSG  198 (218)
T ss_dssp             EEECCCS
T ss_pred             EEECCCC
Confidence            9999973

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A

Probab=99.93  E-value=8.2e-27  Score=200.31  Aligned_cols=82  Identities=30%  Similarity=0.592  Sum_probs=72.9

Q ss_pred             CccceeeeeecccceEEEEecc-ccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcEEE
Q psy282          136 GSETMKKILYKYGPLSVGLNSH-LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK  214 (233)
Q Consensus       136 ~e~~i~~~l~~~GPv~v~i~~~-~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy~~  214 (233)
                      ++++|+++|.++|||+++|++. .|++|++|||..  ..|. ..++|||+|||||++++++|||||||||+.|||+||||
T Consensus       172 ~~~~i~~~i~~~GPV~v~i~~~~~f~~Y~~GIy~~--~~~~-~~~~HaV~iVGyg~~~g~~YWivkNSWG~~WGe~GY~~  248 (277)
T 1deu_A          172 GREKMMAEIYANGPISCGIMATERLANYTGGIYAE--YQDT-TYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLR  248 (277)
T ss_dssp             SHHHHHHHHHHHCCEEEEECCCHHHHTCCSSEECB--CCSC-CCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEE
T ss_pred             CHHHHHHHHHHcCCEEEEEecccccccCcCcEECC--CCCC-CcCCeEEEEEEecccCCccEEEEEeCCCCccCCCcEEE
Confidence            4678999999999999999995 799999999863  2343 46899999999999999999999999999999999999


Q ss_pred             EEccCC
Q psy282          215 IEHTLR  220 (233)
Q Consensus       215 i~~~~~  220 (233)
                      |+|+.+
T Consensus       249 i~rg~n  254 (277)
T 1deu_A          249 IVTSTY  254 (277)
T ss_dssp             EECTTH
T ss_pred             EEcCCC
Confidence            999976

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare}

Probab=99.93  E-value=9.7e-27  Score=198.23  Aligned_cols=82  Identities=32%  Similarity=0.711  Sum_probs=72.1

Q ss_pred             cCccceeeeeecccceEEEEecc--ccccccCcceecCCCCCCCCCCCEEEEEEEeeec-CCcCEEEEEcCCCCCCCCCc
Q psy282          135 NGSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ-DDIPYWLVRNSWGPIGPDEG  211 (233)
Q Consensus       135 ~~e~~i~~~l~~~GPv~v~i~~~--~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~-~~~~ywivkNSWg~~WG~~G  211 (233)
                      .+++.|+++|.+ |||+++|++.  .|++|++|||.   ..|++ .++|||+|||||++ ++++|||||||||++|||+|
T Consensus       124 ~~e~~ik~al~~-GPV~v~i~~~~~~f~~Y~sGVy~---~~c~~-~~~HaV~IVGyg~~~~G~~YWivkNSWG~~WGe~G  198 (262)
T 2fo5_A          124 NSEEDLARAVAN-QPVSVAVEASGKAFMFYSEGVFT---GECGT-ELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQG  198 (262)
T ss_dssp             TCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEEC---CCCCC-CCCEEEEEEEEEECTTSCEEEEEECSBCTTSTBTT
T ss_pred             chHHHHHHHHHh-CCEEEEEecChHHHhccCCceEC---CCCCC-cCCEEEEEEEEcccCCCceEEEEEeCCCCCCCCCe
Confidence            356788888876 9999999994  79999999985   36876 47999999999987 58999999999999999999


Q ss_pred             EEEEEccCCC
Q psy282          212 FFKIEHTLRS  221 (233)
Q Consensus       212 y~~i~~~~~~  221 (233)
                      ||||+|+.++
T Consensus       199 Y~ri~r~~n~  208 (262)
T 2fo5_A          199 YIRVEKDSGA  208 (262)
T ss_dssp             EEEEESSCSC
T ss_pred             EEEEEcCCCC
Confidence            9999999865

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1

Probab=99.93  E-value=9.5e-27  Score=203.76  Aligned_cols=103  Identities=25%  Similarity=0.477  Sum_probs=82.6

Q ss_pred             CCCCCcceeeeccccccCccc-------------ccccCccceeeeeecccceEEEEecc--ccccccCcceecCCCCCC
Q psy282          111 IGPDEGFFKIERGNNACGKDF-------------LHFNGSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDETCS  175 (233)
Q Consensus       111 ~wge~gy~~~~~~~~~Cgi~~-------------~~~~~e~~i~~~l~~~GPv~v~i~~~--~~~~y~~gi~~~~~~~~~  175 (233)
                      .-.|..|||... +..|....             ++..+++.|+++|.+ |||+++|++.  .|++|++|||.   ..|+
T Consensus       186 i~~e~~yPY~~~-~~~C~~~~~~~~~~~i~~~~~v~~~~e~~l~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~---~~c~  260 (322)
T 1pci_A          186 IHLRSKYPYKAK-QGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFE---GPCG  260 (322)
T ss_dssp             BCBTTTSCCCSS-CCCCTTTTCCSCCBCCCCEEECCSSBHHHHHHHHHH-SCEEEEECTTCHHHHTEEEEEEC---CSCC
T ss_pred             CCchhhCCCCCC-CCCCCCCCCCCceEEEeeEEEeCCCcHHHHHHHHHH-CCEEEEEecccccccccCCeEeC---CCCC
Confidence            455777777554 34554321             112356688888875 9999999994  79999999985   3587


Q ss_pred             CCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcEEEEEccC
Q psy282          176 PYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIEHTL  219 (233)
Q Consensus       176 ~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy~~i~~~~  219 (233)
                      + .++|||+|||||+++|++|||||||||+.|||+|||||+|+.
T Consensus       261 ~-~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~  303 (322)
T 1pci_A          261 T-KVDGAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAP  303 (322)
T ss_dssp             S-CCCEEEEEEEEEEETTEEEEEEECSBCSSSTBTTEEEEECCC
T ss_pred             C-CCCEEEEEEEEeccCCccEEEEEeCCCCcccCCeEEEEEcCC
Confidence            6 579999999999999999999999999999999999999997

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} SCOP: d.3.1.0

Probab=99.92  E-value=1.5e-26  Score=192.71  Aligned_cols=80  Identities=30%  Similarity=0.661  Sum_probs=71.8

Q ss_pred             cCccceeeeeecccceEEEEecc--ccccccCcceecCCCCCCCCCCCEEEEEEEeeec--CCcCEEEEEcCCCCCCCCC
Q psy282          135 NGSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ--DDIPYWLVRNSWGPIGPDE  210 (233)
Q Consensus       135 ~~e~~i~~~l~~~GPv~v~i~~~--~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~--~~~~ywivkNSWg~~WG~~  210 (233)
                      .+++.|+++|. +|||+++|++.  .|++|++|||.   +.|+ ..++|||+|||||++  ++++|||||||||+.|||+
T Consensus       124 ~~~~~l~~~l~-~gPV~v~i~~~~~~f~~y~~Giy~---~~~~-~~~~Hav~iVGyg~~~~~g~~ywivkNSWG~~WG~~  198 (224)
T 3f75_A          124 RSEAAMKAALA-KSPVSIAIEADQMPFQFYHEGVFD---ASCG-TDLDHGVLLVGYGTDKESKKDFWIMKNSWGTGWGRD  198 (224)
T ss_dssp             SCHHHHHHHHH-HSCEEEEECCCSHHHHTEEEEEEC---CCCC-CCCCEEEEEEEEEEETTTTEEEEEEECSBCTTSTBT
T ss_pred             ChHHHHHHHHc-CCCEEEEEeccchhhhcCccceEC---CCCC-CccCeEEEEEEEecccCCCCCEEEEECCcCcchhhC
Confidence            35678999997 89999999994  79999999985   4675 468999999999998  8899999999999999999


Q ss_pred             cEEEEEccC
Q psy282          211 GFFKIEHTL  219 (233)
Q Consensus       211 Gy~~i~~~~  219 (233)
                      |||||+|+.
T Consensus       199 Gy~~i~~~~  207 (224)
T 3f75_A          199 GYMYMAMHK  207 (224)
T ss_dssp             TEEEEESCS
T ss_pred             CEEEEEcCC
Confidence            999999998

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1

Probab=99.92  E-value=2e-26  Score=192.81  Aligned_cols=80  Identities=30%  Similarity=0.694  Sum_probs=70.3

Q ss_pred             CccceeeeeecccceEEEEecc--ccccccCcceecCCCCCCCCCCCEEEEEEEeeecC-CcCEEEEEcCCCCCCCCCcE
Q psy282          136 GSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD-DIPYWLVRNSWGPIGPDEGF  212 (233)
Q Consensus       136 ~e~~i~~~l~~~GPv~v~i~~~--~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~-~~~ywivkNSWg~~WG~~Gy  212 (233)
                      +++.|+++|.+ |||+++|++.  .|++|++|||.   ..|++ .++|||+|||||+++ +++|||||||||+.|||+||
T Consensus       120 ~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~---~~c~~-~~~HaV~iVGyg~~~~g~~yWivkNSWG~~WGe~Gy  194 (229)
T 1s4v_A          120 DENALLKAVAN-QPVSVAIDAGGSDFQFYSEGVFT---GSCGT-ELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGY  194 (229)
T ss_dssp             CHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEEC---CCCCC-CCCEEEEEEEEEECTTSCEEEEEECSBCTTSTBTTE
T ss_pred             cHHHHHHHHhc-CCEEEEEEeCcHHHhhCCCcEEC---CCCCC-CCCeEEEEEEeccccCCCCEEEEEeCCCCCccCCcE
Confidence            56678888875 9999999993  69999999985   35765 479999999999986 89999999999999999999


Q ss_pred             EEEEccCC
Q psy282          213 FKIEHTLR  220 (233)
Q Consensus       213 ~~i~~~~~  220 (233)
                      |||+|+.+
T Consensus       195 ~~i~r~~~  202 (229)
T 1s4v_A          195 IRMERGIS  202 (229)
T ss_dssp             EEEECSCS
T ss_pred             EEEEcCCC
Confidence            99999963

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*

Probab=99.92  E-value=5.2e-26  Score=206.13  Aligned_cols=111  Identities=25%  Similarity=0.407  Sum_probs=85.2

Q ss_pred             CCCCCcceeeeccccccCccc---------c---c----ccCccceeeeeecccceEEEEec-cccccccCcceecCCCC
Q psy282          111 IGPDEGFFKIERGNNACGKDF---------L---H----FNGSETMKKILYKYGPLSVGLNS-HLIHFYNGTPIRKNDET  173 (233)
Q Consensus       111 ~wge~gy~~~~~~~~~Cgi~~---------~---~----~~~e~~i~~~l~~~GPv~v~i~~-~~~~~y~~gi~~~~~~~  173 (233)
                      .-.|+.|||... +..|....         +   .    ..++++|+++|+++|||+++|++ ..|++|++|||..  ..
T Consensus       292 i~tE~~yPY~~~-~~~C~~~~~~~~~~~~~y~~v~~~~~~~~e~~ik~al~~~GPVsvai~a~~~F~~Y~sGVy~~--~~  368 (441)
T 3pdf_A          292 LVEEACFPYTGT-DSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHH--TG  368 (441)
T ss_dssp             BCBGGGSCCCSS-CCCSCCCSSCCCBCEEEEEETTSSTTCCCHHHHHHHHHHHCCEEEEECCCGGGGGCCSSEECC--C-
T ss_pred             CCcHHHeeeccc-CCCCCCccccceeeeccEEEeCCccCCCcHHHHHHHHHHCCCeEEEEEecccccccCCceEec--CC
Confidence            345777887654 34564321         0   0    13567899999999999999999 5799999999863  23


Q ss_pred             CCC-----CCCCEEEEEEEeeec--CCcCEEEEEcCCCCCCCCCcEEEEEccCCCCcc
Q psy282          174 CSP-----YDLGHAVLLVGYGKQ--DDIPYWLVRNSWGPIGPDEGFFKIEHTLRSHLT  224 (233)
Q Consensus       174 ~~~-----~~~~Hav~iVGy~~~--~~~~ywivkNSWg~~WG~~Gy~~i~~~~~~~~~  224 (233)
                      |..     ..++|||+|||||++  ++++|||||||||+.|||+|||||+|+.+.|.+
T Consensus       369 ~~~~~~~~~~~~HaV~iVGyG~~~~~G~~YWIVkNSWG~~WGe~GYfri~rg~n~CGI  426 (441)
T 3pdf_A          369 LRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAI  426 (441)
T ss_dssp             --CCCCCCCCCCEEEEEEEEEECTTTCCEEEEEECSBCTTSTBTTEEEEECSSCGGGT
T ss_pred             CCcccCCCCcCCeEEEEEEecccCCCCceEEEEEcCCCCCcCCCeEEEEEcCCCccCC
Confidence            321     358999999999985  689999999999999999999999999876644

>3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya}

Probab=99.92  E-value=5.9e-26  Score=201.03  Aligned_cols=86  Identities=29%  Similarity=0.517  Sum_probs=70.8

Q ss_pred             CccceeeeeecccceEEEEec--cccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcEE
Q psy282          136 GSETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFF  213 (233)
Q Consensus       136 ~e~~i~~~l~~~GPv~v~i~~--~~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy~  213 (233)
                      ++..++.++ ..|||+|+|++  .+|++|++|||.   ..|+. .++|||+|||||+    +|||||||||+.|||+|||
T Consensus       268 ~e~~l~~~v-~~gPvsvai~a~~~~F~~Y~sGVy~---~~~~~-~lnHaV~iVGyG~----~YWIVKNSWGt~WGe~GY~  338 (363)
T 3tnx_A          268 NEGALLYSI-ANQPVSVVLEAAGKDFQLYRGGIFV---GPCGN-KVDHAVAAVGYGP----NYILIRNSWGTGWGENGYI  338 (363)
T ss_dssp             CHHHHHHHH-TTSCEEEEECCCSHHHHTEEEEEEC---CCCCS-CCCEEEEEEEEET----TEEEEECSBCTTSTBTTEE
T ss_pred             hHHHHHHHH-HcCCcEEEEEecchhhhCCCCCEEC---CCCCC-CCCeEEEEEEcCC----CcEEEEeCCCCccccCcEE
Confidence            455566666 56999999997  379999999985   34664 5899999999986    4999999999999999999


Q ss_pred             EEEccCCCCccCCCCCCCC
Q psy282          214 KIEHTLRSHLTHDIPGVPT  232 (233)
Q Consensus       214 ~i~~~~~~~~~~~~~~~~~  232 (233)
                      ||+|+.++.  .++|||.+
T Consensus       339 rI~Rg~~~~--~~~CGI~~  355 (363)
T 3tnx_A          339 RIKRGTGNS--YGVCGLYT  355 (363)
T ss_dssp             EEECCSCCS--SCGGGTTS
T ss_pred             EEEcCCCCC--CCcCCccc
Confidence            999998764  46777654

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa}

Probab=99.92  E-value=1e-25  Score=194.84  Aligned_cols=118  Identities=24%  Similarity=0.368  Sum_probs=97.6

Q ss_pred             CCCCCCCCCCCCCCCCCccccccC--------C------CceeEEeCCceEEeC-CHHHHHHHHHhcCCEEEEEecC-CC
Q psy282            1 MGLESEKDYPYKNANGEKFKCAYD--------K------SKVKLFTGKDFLHFN-GSETMKKILYKYGPLSVLLNSD-LI   64 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~C~~~--------~------~~~~~~i~~~~~~v~-~~~~i~~~l~~~GPv~v~i~~~-~f   64 (233)
                      +||++|++|||.+.+.....|+..        +      ....+++.+ |..|+ ++++||++|+++|||+++|++. +|
T Consensus       136 ~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~~p~~~C~~~~~~~~i~~-y~~v~~~e~~i~~al~~~gPV~v~~~~~~~f  214 (291)
T 3ois_A          136 LGVCPEKEWPYGDTPADPRTEEFPPGAPASKKPSDQCYKDAQNYKITE-YSRVAQDIDHLKACLAVGSPFVFGFSVYNSW  214 (291)
T ss_dssp             TCCCBGGGSCCCCCCCCTTTCSCCTTCGGGSCCCHHHHHHHGGGCCCE-EEECCSCHHHHHHHHHTTCCEEEEEEEEHHH
T ss_pred             hCCCCHhhCCCCCCccccccccccccccccCCCCHHHHhhcccceecc-EEEcCcCHHHHHHHHHcCCCEEEEEEeccch
Confidence            599999999999874211145431        0      124567888 99998 9999999999999999999995 89


Q ss_pred             CCcCC--ceeeCCCCCCCCC-CCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeecc
Q psy282           65 HDYNG--TPIRKNDETCSPY-DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG  123 (233)
Q Consensus        65 ~~y~~--Gi~~~~~~~c~~~-~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~  123 (233)
                      +.|++  |||..+  .|... .++|||+|||||  ++.+|||||||||+.||++||+|+.++
T Consensus       215 ~~y~~~~Gi~~~~--~~~~~~~~~Hav~iVGy~--~~~~ywivkNSWG~~WG~~Gy~~i~~~  272 (291)
T 3ois_A          215 VGNNSLPVRIPLP--TKNDTLEGGHAVLCVGYD--DEIRHFRIRNSWGNNVGEDGYFWMPYE  272 (291)
T ss_dssp             HGGGCCCSBCCCC--CTTSCEEEEEEEEEEEEE--TTTTEEEEECSBCTTSTBTTEEEEEHH
T ss_pred             hhcCCCCeEEeCC--CCCCCCcCCeEEEEEEEe--CCCCEEEEEeCCCCCCCCCcEEEEEHH
Confidence            99998  999887  46544 359999999998  578999999999999999999999886

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ...

Probab=99.91  E-value=9.1e-26  Score=186.73  Aligned_cols=75  Identities=29%  Similarity=0.555  Sum_probs=66.8

Q ss_pred             CccceeeeeecccceEEEEecc--ccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcEE
Q psy282          136 GSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFF  213 (233)
Q Consensus       136 ~e~~i~~~l~~~GPv~v~i~~~--~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy~  213 (233)
                      +++.|+++|.+ |||+++|++.  .|++|++|||.   ..|++ .++|||+|||||+    +|||||||||++|||+|||
T Consensus       117 ~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~---~~~~~-~~~HaV~iVGyg~----~yWivkNSWG~~WGe~Gy~  187 (212)
T 2cio_A          117 NEGALLYSIAN-QPVSVVLEAAGKDFQLYRGGIFV---GPCGN-KVDHAVAAVGYGP----NYILIKNSWGTGWGENGYI  187 (212)
T ss_dssp             CHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEEC---CCCCS-CCCEEEEEEEEET----TEEEEECSBCTTSTBTTEE
T ss_pred             cHHHHHHHHHh-CCEEEEEeccCcchhhcCCceec---CCCCC-CCCEEEEEEEecC----CeEEEEeCCCCCcccCcEE
Confidence            56678888875 9999999994  69999999985   35776 5799999999997    7999999999999999999


Q ss_pred             EEEccC
Q psy282          214 KIEHTL  219 (233)
Q Consensus       214 ~i~~~~  219 (233)
                      ||+|+.
T Consensus       188 ~i~~~~  193 (212)
T 2cio_A          188 RIKRGT  193 (212)
T ss_dssp             EEECSS
T ss_pred             EEEcCC
Confidence            999997

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*

Probab=99.91  E-value=1.1e-25  Score=185.79  Aligned_cols=76  Identities=26%  Similarity=0.594  Sum_probs=67.2

Q ss_pred             cCccceeeeeecccceEEEEecc--ccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcE
Q psy282          135 NGSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF  212 (233)
Q Consensus       135 ~~e~~i~~~l~~~GPv~v~i~~~--~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy  212 (233)
                      .+++.|+++|.+ |||+++|++.  .|++|++|||.   ..|++ .++|||+|||||+    +|||||||||++|||+||
T Consensus       114 ~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~---~~c~~-~~~HaV~iVGyg~----~yWivkNSWG~~WGe~Gy  184 (208)
T 1o0e_A          114 CNEXALKQAVAV-QPSTVAIDASSAQFQQYSSGIFS---GPCGT-KLNHGVTIVGYQA----NYWIVRNSWGRYWGEKGY  184 (208)
T ss_dssp             TCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEEC---CCCCS-CCCEEEEEEEECS----SEEEEECSBCTTSTBTTE
T ss_pred             CCHHHHHHHHHh-CCEEEEEEccCcccccccCceEC---CCCCC-cCCEEEEEEEeCC----CeEEEEcCCCCcccCCcE
Confidence            356788898875 9999999994  69999999985   35775 5799999999997    799999999999999999


Q ss_pred             EEEEccC
Q psy282          213 FKIEHTL  219 (233)
Q Consensus       213 ~~i~~~~  219 (233)
                      |||+|+.
T Consensus       185 ~~i~~~~  191 (208)
T 1o0e_A          185 IRMLRVG  191 (208)
T ss_dssp             EEEECCS
T ss_pred             EEEEcCC
Confidence            9999997

>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X

Probab=99.91  E-value=2e-25  Score=190.45  Aligned_cols=83  Identities=31%  Similarity=0.584  Sum_probs=67.1

Q ss_pred             cceeeeeecccceEEEEecccccccc-CcceecCCCCCCCCCCCEEEEEEEeeec---CC--cCEEEEEcCCCCCCCCCc
Q psy282          138 ETMKKILYKYGPLSVGLNSHLIHFYN-GTPIRKNDETCSPYDLGHAVLLVGYGKQ---DD--IPYWLVRNSWGPIGPDEG  211 (233)
Q Consensus       138 ~~i~~~l~~~GPv~v~i~~~~~~~y~-~gi~~~~~~~~~~~~~~Hav~iVGy~~~---~~--~~ywivkNSWg~~WG~~G  211 (233)
                      ++|+++|.++|||+++|+++.|+.|+ .|++.+  ..|+...++|||+|||||++   ++  ++|||||||||++|||+|
T Consensus       158 ~~ik~~i~~~GPV~v~i~~~~f~~y~~~g~~~~--~~c~~~~~~HaV~iVGyG~~~~~~g~~~~YWivkNSWG~~WGe~G  235 (265)
T 2wbf_X          158 KIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVK--NLCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEG  235 (265)
T ss_dssp             HHHHHHHHHHSCEEEEECGGGGCSGGGGSSSEE--CCCCCSCCCEEEEEEEEEEEECTTSCEEEEEEEECSBCTTSTBTT
T ss_pred             HHHHHHHHhcCCEEEEEEcccccccccCCcEEc--CCCCCCcCCEEEEEEEEeCCcccCCCcCCEEEEEcCCCCccCCCC
Confidence            57888999999999999996666553 444432  35876678999999999985   55  689999999999999999


Q ss_pred             EEEEEcc-CCCC
Q psy282          212 FFKIEHT-LRSH  222 (233)
Q Consensus       212 y~~i~~~-~~~~  222 (233)
                      ||||+|+ .+.|
T Consensus       236 Y~ri~~~g~n~C  247 (265)
T 2wbf_X          236 YFKVDMYGPTHC  247 (265)
T ss_dssp             EEEEESSCCTTC
T ss_pred             EEEEEecCCCcc
Confidence            9999975 4444

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana}

Probab=99.91  E-value=1.5e-25  Score=185.72  Aligned_cols=77  Identities=34%  Similarity=0.648  Sum_probs=68.0

Q ss_pred             cCccceeeeeecccceEEEEecc--ccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcE
Q psy282          135 NGSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF  212 (233)
Q Consensus       135 ~~e~~i~~~l~~~GPv~v~i~~~--~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy  212 (233)
                      .++++|+++|.+ |||+++|++.  .|++|++|||.   ..|++ .++|||+|||||+    +|||||||||++|||+||
T Consensus       116 ~~~~~i~~~l~~-gPV~v~i~~~~~~f~~Y~~Giy~---~~~~~-~~~HaV~iVGyg~----~yWivkNSWG~~WGe~Gy  186 (214)
T 2bdz_A          116 NDEISLIQAIAN-QPVSVVTDSRGRGFQFYKGGIYE---GPCGT-NTDHAVTAVGYGK----TYLLLKNSWGPNWGEKGY  186 (214)
T ss_dssp             SBHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEEC---CSCCS-CCCEEEEEEEECS----SEEEEECSBCTTSTBTTE
T ss_pred             CcHHHHHHHHHh-CCEEEEEeeChhHhhcccCceec---CCCCC-CCCeEEEEEEcCC----CeEEEEeCCCCCcccCCE
Confidence            356789999976 9999999995  79999999985   35775 5899999999997    799999999999999999


Q ss_pred             EEEEccCC
Q psy282          213 FKIEHTLR  220 (233)
Q Consensus       213 ~~i~~~~~  220 (233)
                      |||+|+.+
T Consensus       187 ~~i~~~~~  194 (214)
T 2bdz_A          187 IRIKRASG  194 (214)
T ss_dssp             EEEECCCS
T ss_pred             EEEEcCCC
Confidence            99999973

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} SCOP: d.3.1.1

Probab=99.91  E-value=4.1e-25  Score=182.91  Aligned_cols=75  Identities=27%  Similarity=0.570  Sum_probs=63.3

Q ss_pred             ccceeeeeecccceEEEEecc--ccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcEEE
Q psy282          137 SETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK  214 (233)
Q Consensus       137 e~~i~~~l~~~GPv~v~i~~~--~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy~~  214 (233)
                      ++.+++++ .+|||+++|++.  .|++|++|||.   ..|.. .++|||+|||||+    +|||||||||++|||+||||
T Consensus       118 ~~~~~~~~-~~GPV~v~i~~~~~~f~~y~~Giy~---~~~~~-~~~HaV~iVGyg~----~yWivkNSWG~~WGe~Gy~~  188 (213)
T 3ioq_A          118 EQALIQRI-AIQPVSIVVEAKGRAFQNYRGGIFA---GPCGT-SIDHAVAAVGYGN----DYILIKNSWGTGWGEGGYIR  188 (213)
T ss_dssp             HHHHHHHH-TTSCEEEEECCCSHHHHTCCSSEEC---CSCCS-CCCEEEEEEEEET----TEEEEECSBCTTSTBTTEEE
T ss_pred             HHHHHHHH-HhCCEEEEEEechhhhhhccCCeEc---CCCCC-ccCceEEEEecCC----CeEEEECCCCCCcccCCeEE
Confidence            33455555 569999999994  79999999985   25654 6799999999996    79999999999999999999


Q ss_pred             EEccCC
Q psy282          215 IEHTLR  220 (233)
Q Consensus       215 i~~~~~  220 (233)
                      |+|+.+
T Consensus       189 i~r~~~  194 (213)
T 3ioq_A          189 IKRGSG  194 (213)
T ss_dssp             EESSCS
T ss_pred             EEcCCC
Confidence            999973

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa}

Probab=99.88  E-value=1.4e-23  Score=181.33  Aligned_cols=80  Identities=30%  Similarity=0.420  Sum_probs=69.3

Q ss_pred             CccceeeeeecccceEEEEec-cccccccC--cceecCCCCCCCC-CCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCc
Q psy282          136 GSETMKKILYKYGPLSVGLNS-HLIHFYNG--TPIRKNDETCSPY-DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEG  211 (233)
Q Consensus       136 ~e~~i~~~l~~~GPv~v~i~~-~~~~~y~~--gi~~~~~~~~~~~-~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~G  211 (233)
                      ++++|+++|.+.|||+++|++ ..|++|++  ||+.  .+.|... .++|||+|||||  ++++|||||||||+.|||+|
T Consensus       190 ~e~~i~~al~~~gPV~v~~~~~~~f~~y~~~~Gi~~--~~~~~~~~~~~Hav~iVGy~--~~~~ywivkNSWG~~WG~~G  265 (291)
T 3ois_A          190 DIDHLKACLAVGSPFVFGFSVYNSWVGNNSLPVRIP--LPTKNDTLEGGHAVLCVGYD--DEIRHFRIRNSWGNNVGEDG  265 (291)
T ss_dssp             CHHHHHHHHHTTCCEEEEEEEEHHHHGGGCCCSBCC--CCCTTSCEEEEEEEEEEEEE--TTTTEEEEECSBCTTSTBTT
T ss_pred             CHHHHHHHHHcCCCEEEEEEeccchhhcCCCCeEEe--CCCCCCCCcCCeEEEEEEEe--CCCCEEEEEeCCCCCCCCCc
Confidence            678899999999999999998 47999988  8875  4456543 359999999998  56889999999999999999


Q ss_pred             EEEEEccC
Q psy282          212 FFKIEHTL  219 (233)
Q Consensus       212 y~~i~~~~  219 (233)
                      ||||+|+-
T Consensus       266 y~~i~~~~  273 (291)
T 3ois_A          266 YFWMPYEY  273 (291)
T ss_dssp             EEEEEHHH
T ss_pred             EEEEEHHH
Confidence            99999984

>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A

Probab=99.80  E-value=3e-20  Score=168.05  Aligned_cols=79  Identities=16%  Similarity=0.185  Sum_probs=67.3

Q ss_pred             cceeeeeecccceEEEEeccccccccCcceecCCCCC-------------------CCCCCCEEEEEEEeeec-CCc--C
Q psy282          138 ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETC-------------------SPYDLGHAVLLVGYGKQ-DDI--P  195 (233)
Q Consensus       138 ~~i~~~l~~~GPv~v~i~~~~~~~y~~gi~~~~~~~~-------------------~~~~~~Hav~iVGy~~~-~~~--~  195 (233)
                      ..++++|..++||.+++++..+++|++||+.  ...|                   ....++|||+|||||.+ +|+  +
T Consensus       313 ~~~~~aL~~g~PV~~~~Dv~~~~~~~~GI~~--~~~~~~~~fg~~~~m~KaeRl~~~~s~~~HAmlivGyg~d~~G~~p~  390 (457)
T 2e01_A          313 KLVVKRLQNNKAVFFGSHTPKFMDKKTGVMD--IELWNYPAIGYNLPQQKASRIRYHESLMTAAMLITGCHVDETSKLPL  390 (457)
T ss_dssp             HHHHHHHHTTCCEEEEECTTTTEETTTTEEC--TTSBCGGGGTCCCCCCHHHHHHTTSCCCCEEEEEEEEEECTTTCCEE
T ss_pred             HHHHHHHHhCCCEEEEEEcCHhHcccCceec--ccccchhhcCcccccCHHHhhccCCCCCCeEEEEEEEEeccCCCccC
Confidence            4566788889999999999888899999984  2222                   34468999999999985 788  8


Q ss_pred             EEEEEcCCCCCCCCCcEEEEEcc
Q psy282          196 YWLVRNSWGPIGPDEGFFKIEHT  218 (233)
Q Consensus       196 ywivkNSWg~~WG~~Gy~~i~~~  218 (233)
                      |||||||||+.||++|||+|+|+
T Consensus       391 yW~VkNSWG~~wG~~GY~~ms~~  413 (457)
T 2e01_A          391 RYRVENSWGKDSGKDGLYVMTQK  413 (457)
T ss_dssp             EEEEECSSCTTSTBTTEEEEEHH
T ss_pred             EEEEEeCccCCcCCCceEEeehh
Confidence            99999999999999999999996

>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease, SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cb5_A

Probab=99.80  E-value=2.8e-20  Score=168.09  Aligned_cols=79  Identities=14%  Similarity=0.160  Sum_probs=66.3

Q ss_pred             cceeeeeecccceEEEEeccccccccCcceecCCCCC---------------------CCCCCCEEEEEEEee--ec-CC
Q psy282          138 ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETC---------------------SPYDLGHAVLLVGYG--KQ-DD  193 (233)
Q Consensus       138 ~~i~~~l~~~GPv~v~i~~~~~~~y~~gi~~~~~~~~---------------------~~~~~~Hav~iVGy~--~~-~~  193 (233)
                      ..+.++|...+||++++++..+.++++||+.  ...|                     ....++|||+|||||  .+ +|
T Consensus       309 ~~~~~al~~g~PV~~~~Dv~~~~~~k~GI~~--~~~~~~~~~fg~~~~~m~KaeRl~~~~s~~~HAmlivGyg~~~d~~G  386 (453)
T 2cb5_A          309 KMVAASIKDGEAVWFGCDVGKHFNSKLGLSD--MNLYDHELVFGVSLKNMNKAERLTFGESLMTHAMTFTAVSEKDDQDG  386 (453)
T ss_dssp             HHHHHHHHTTCCEEEEECTTTTEETTTTEEC--TTSBCHHHHHSCCSCSSCHHHHHHTTSCCCCEEEEEEEEEECTTSCS
T ss_pred             HHHHHHHHcCCCEEEEEEeChhhccCCcEEc--CccccchhhcCccccccCHHHHhhccCCCCCeEEEEEEeccccccCC
Confidence            3556788889999999999877778999975  2334                     234689999999999  65 67


Q ss_pred             c-CEEEEEcCCCCCCCCCcEEEEEcc
Q psy282          194 I-PYWLVRNSWGPIGPDEGFFKIEHT  218 (233)
Q Consensus       194 ~-~ywivkNSWg~~WG~~Gy~~i~~~  218 (233)
                      + +|||||||||+.||++|||+|+|+
T Consensus       387 ~~~yWiVkNSWG~~wG~~GY~~ms~~  412 (453)
T 2cb5_A          387 AFTKWRVENSWGEDHGHKGYLCMTDE  412 (453)
T ss_dssp             CEEEEEEECSBCTTSTBTTEEEEEHH
T ss_pred             CccEEEEEcCcCCCcCcCceEEechh
Confidence            7 899999999999999999999986

>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A

Probab=99.67  E-value=1e-16  Score=144.96  Aligned_cols=88  Identities=15%  Similarity=0.178  Sum_probs=72.0

Q ss_pred             eEEeC-CH--HHHHHHHHhcCCEEEEEecCCCCCcCCceeeCCCC-----------------CCCCCCCCcEEEEEeeec
Q psy282           36 FLHFN-GS--ETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDE-----------------TCSPYDLGHAVLLVGYGK   95 (233)
Q Consensus        36 ~~~v~-~~--~~i~~~l~~~GPv~v~i~~~~f~~y~~Gi~~~~~~-----------------~c~~~~~~H~v~ivG~g~   95 (233)
                      |..++ ++  +.++++|..+|||++++++..|++|++||+....+                 .|.....+|||+|||||.
T Consensus       303 y~Nvp~d~l~~~~~~aL~~g~PV~~~~Dv~~~~~~~~GI~~~~~~~~~~fg~~~~m~KaeRl~~~~s~~~HAmlivGyg~  382 (457)
T 2e01_A          303 YLNVDNETLSKLVVKRLQNNKAVFFGSHTPKFMDKKTGVMDIELWNYPAIGYNLPQQKASRIRYHESLMTAAMLITGCHV  382 (457)
T ss_dssp             EEECCHHHHHHHHHHHHHTTCCEEEEECTTTTEETTTTEECTTSBCGGGGTCCCCCCHHHHHHTTSCCCCEEEEEEEEEE
T ss_pred             EEEcCHHHHHHHHHHHHHhCCCEEEEEEcCHhHcccCceecccccchhhcCcccccCHHHhhccCCCCCCeEEEEEEEEe
Confidence            55555 33  66778899999999999998788899999965410                 013456899999999998


Q ss_pred             c-CCc--cEEEEecCCCCCCCCCcceeeecc
Q psy282           96 Q-DDI--PYWLVRNSWGPIGPDEGFFKIERG  123 (233)
Q Consensus        96 ~-~~~--~ywivknswg~~wge~gy~~~~~~  123 (233)
                      + ++.  +||+||||||+.||++||+++.++
T Consensus       383 d~~G~~p~yW~VkNSWG~~wG~~GY~~ms~~  413 (457)
T 2e01_A          383 DETSKLPLRYRVENSWGKDSGKDGLYVMTQK  413 (457)
T ss_dssp             CTTTCCEEEEEEECSSCTTSTBTTEEEEEHH
T ss_pred             ccCCCccCEEEEEeCccCCcCCCceEEeehh
Confidence            6 788  899999999999999999998874

>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease, SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cb5_A

Probab=99.66  E-value=1.5e-16  Score=143.70  Aligned_cols=79  Identities=14%  Similarity=0.156  Sum_probs=67.0

Q ss_pred             HHHHHHHHhcCCEEEEEecCCCCCcCCceeeCCCCCC---------------------CCCCCCcEEEEEeee--cc-CC
Q psy282           43 ETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETC---------------------SPYDLGHAVLLVGYG--KQ-DD   98 (233)
Q Consensus        43 ~~i~~~l~~~GPv~v~i~~~~f~~y~~Gi~~~~~~~c---------------------~~~~~~H~v~ivG~g--~~-~~   98 (233)
                      +.++++|...|||++++++..+.++++|||...  .|                     .....||||+|||||  .+ ++
T Consensus       309 ~~~~~al~~g~PV~~~~Dv~~~~~~k~GI~~~~--~~~~~~~fg~~~~~m~KaeRl~~~~s~~~HAmlivGyg~~~d~~G  386 (453)
T 2cb5_A          309 KMVAASIKDGEAVWFGCDVGKHFNSKLGLSDMN--LYDHELVFGVSLKNMNKAERLTFGESLMTHAMTFTAVSEKDDQDG  386 (453)
T ss_dssp             HHHHHHHHTTCCEEEEECTTTTEETTTTEECTT--SBCHHHHHSCCSCSSCHHHHHHTTSCCCCEEEEEEEEEECTTSCS
T ss_pred             HHHHHHHHcCCCEEEEEEeChhhccCCcEEcCc--cccchhhcCccccccCHHHHhhccCCCCCeEEEEEEeccccccCC
Confidence            456688999999999999976666799999765  34                     234689999999999  75 78


Q ss_pred             c-cEEEEecCCCCCCCCCcceeeecc
Q psy282           99 I-PYWLVRNSWGPIGPDEGFFKIERG  123 (233)
Q Consensus        99 ~-~ywivknswg~~wge~gy~~~~~~  123 (233)
                      . +||+||||||+.||++||+++.++
T Consensus       387 ~~~yWiVkNSWG~~wG~~GY~~ms~~  412 (453)
T 2cb5_A          387 AFTKWRVENSWGEDHGHKGYLCMTDE  412 (453)
T ss_dssp             CEEEEEEECSBCTTSTBTTEEEEEHH
T ss_pred             CccEEEEEcCcCCCcCcCceEEechh
Confidence            7 999999999999999999998764

>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis}

Probab=99.55  E-value=3e-15  Score=132.69  Aligned_cols=80  Identities=18%  Similarity=0.268  Sum_probs=60.6

Q ss_pred             ceeeeeecccceEEEEeccccccccCcceecCCC-------------------------------------------CCC
Q psy282          139 TMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDE-------------------------------------------TCS  175 (233)
Q Consensus       139 ~i~~~l~~~GPv~v~i~~~~~~~y~~gi~~~~~~-------------------------------------------~~~  175 (233)
                      .+.++|...-||-.+-++....+.+.||....+.                                           +..
T Consensus       233 ~~~~~Lk~G~~V~fg~DV~~~~f~~~Gi~~~~~~~~~~~~~g~~~~~~~~~~kaer~~~~~~~~e~~~tk~~R~~~~d~~  312 (383)
T 3pw3_A          233 VFDNAINTGYTIAWGSDVSESGFTRDGVAVMPDDEKVQELSGSDMAHWLKLKPEEKKLNTKPQPQKWCTQAERQLAYDNY  312 (383)
T ss_dssp             HHHHHHHTTCCEEEEEECCSTTBCTTSEECCBCHHHHHHHSSCCHHHHHTSCHHHHCTTTSCCCBCCCCHHHHHHHHHTT
T ss_pred             HHHHHHHcCCcEEEEcccCccccCCCceeeCcchhhHHHhcCcchhhhccCCHHHhhhccCCCcccCCCHHHHHHHhhhc
Confidence            4556676778999999996444447787631100                                           001


Q ss_pred             CCCCCEEEEEEEeee-cCCcCEEEEEcCCCCCCCCCcEEEEEcc
Q psy282          176 PYDLGHAVLLVGYGK-QDDIPYWLVRNSWGPIGPDEGFFKIEHT  218 (233)
Q Consensus       176 ~~~~~Hav~iVGy~~-~~~~~ywivkNSWg~~WG~~Gy~~i~~~  218 (233)
                      .+..+|||+|||||. ++|++||+||||||+.||++|||+|+|+
T Consensus       313 ~t~~~Ha~~ivG~~~d~~g~~yw~vkNSWg~~~g~~Gy~~m~~~  356 (383)
T 3pw3_A          313 ETTDDHGMQIYGIAKDQEGNEYYMVKNSWGTNSKYNGIWYASKA  356 (383)
T ss_dssp             SSCCEEEEEEEEEEECTTCCEEEEEECSBCSCSTTTTEEEEEHH
T ss_pred             cCcCCeEEEEEEEEEcCCCceEEEEEeCCCCCCCcCCeEEecHH
Confidence            235689999999997 6788999999999999999999999985

>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis}

Probab=99.04  E-value=4.5e-10  Score=99.55  Aligned_cols=87  Identities=15%  Similarity=0.176  Sum_probs=62.6

Q ss_pred             eEEeC-C--HHHHHHHHHhcCCEEEEEecCCCCCcCCceeeCCCC-----------------------------------
Q psy282           36 FLHFN-G--SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDE-----------------------------------   77 (233)
Q Consensus        36 ~~~v~-~--~~~i~~~l~~~GPv~v~i~~~~f~~y~~Gi~~~~~~-----------------------------------   77 (233)
                      +.+++ +  .+.+.++|...-||..+=|+....+.+.||...+..                                   
T Consensus       222 ~~Nvp~d~l~~~~~~~Lk~G~~V~fg~DV~~~~f~~~Gi~~~~~~~~~~~~~g~~~~~~~~~~kaer~~~~~~~~e~~~t  301 (383)
T 3pw3_A          222 SYNLPLDEFMEVFDNAINTGYTIAWGSDVSESGFTRDGVAVMPDDEKVQELSGSDMAHWLKLKPEEKKLNTKPQPQKWCT  301 (383)
T ss_dssp             EEECCHHHHHHHHHHHHHTTCCEEEEEECCSTTBCTTSEECCBCHHHHHHHSSCCHHHHHTSCHHHHCTTTSCCCBCCCC
T ss_pred             cCCcCHHHHHHHHHHHHHcCCcEEEEcccCccccCCCceeeCcchhhHHHhcCcchhhhccCCHHHhhhccCCCcccCCC
Confidence            45555 1  234556666767999999996322228898843210                                   


Q ss_pred             --------CCCCCCCCcEEEEEeeec-cCCccEEEEecCCCCCCCCCcceeeec
Q psy282           78 --------TCSPYDLGHAVLLVGYGK-QDDIPYWLVRNSWGPIGPDEGFFKIER  122 (233)
Q Consensus        78 --------~c~~~~~~H~v~ivG~g~-~~~~~ywivknswg~~wge~gy~~~~~  122 (233)
                              +......+|||+|||||. +++.+||+++||||+.||++||+++.+
T Consensus       302 k~~R~~~~d~~~t~~~Ha~~ivG~~~d~~g~~yw~vkNSWg~~~g~~Gy~~m~~  355 (383)
T 3pw3_A          302 QAERQLAYDNYETTDDHGMQIYGIAKDQEGNEYYMVKNSWGTNSKYNGIWYASK  355 (383)
T ss_dssp             HHHHHHHHHTTSSCCEEEEEEEEEEECTTCCEEEEEECSBCSCSTTTTEEEEEH
T ss_pred             HHHHHHHhhhccCcCCeEEEEEEEEEcCCCceEEEEEeCCCCCCCcCCeEEecH
Confidence                    001235689999999997 578999999999999999999998875

>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP: d.3.1.1 PDB: 1y4h_A

Probab=81.24  E-value=5.5  Score=31.05  Aligned_cols=56  Identities=21%  Similarity=0.318  Sum_probs=42.4

Q ss_pred             CCHHHHHHHHHhcCCEEEEEecCCCCCcCCceeeCCCCCCCCCCCCcEEEEEeeeccCCccEEEEecCC
Q psy282           40 NGSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSW  108 (233)
Q Consensus        40 ~~~~~i~~~l~~~GPv~v~i~~~~f~~y~~Gi~~~~~~~c~~~~~~H~v~ivG~g~~~~~~ywivknsw  108 (233)
                      ++-+++++.+.++.|+.+....         ++...    +.....||++|+||-..++.++.++=|-|
T Consensus        97 ls~neV~~~i~~Nk~I~v~~~~---------v~e~~----~~~~~gHA~av~Gya~~~~~~~y~~WNPW  152 (183)
T 1pxv_A           97 PSYNQVDQLTKDNVGIMILAQS---------VSQNP----NDPHLGHALAVVGNAKINDQEKLIYWNPW  152 (183)
T ss_dssp             CCHHHHHHHHHTTCCEEEEEEC---------CCSST----TSCCCEEEEEEEEEEEETTEEEEEEECTT
T ss_pred             CCHHHHHHHHhcCCcEEEEccc---------cccCC----CCccCceeEEEEeeeecCCCeEEEEeCCc
Confidence            3889999999999999887653         22222    33467999999999887787888877765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	233
d1m6da_	214	d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [Ta	2e-19
d1m6da_	214	d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [Ta	8e-14
d1gmya_	254	d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens	2e-19
d1gmya_	254	d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens	1e-13
d1deua_	275	d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens	5e-19
d1deua_	275	d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens	5e-14
d1cs8a_	316	d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens	2e-18
d1cs8a_	316	d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens	6e-16
d2r6na1	215	d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sa	1e-17
d2r6na1	215	d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sa	2e-13
d1xkga1	302	d.3.1.1 (A:4-305) Major mite fecal allergen der p	1e-17
d1xkga1	302	d.3.1.1 (A:4-305) Major mite fecal allergen der p	2e-12
g8pch.1	228	d.3.1.1 (P:,A:) Cathepsin H {Pig (Sus scrofa) [Tax	1e-17
g8pch.1	228	d.3.1.1 (P:,A:) Cathepsin H {Pig (Sus scrofa) [Tax	1e-11
d1me4a_	215	d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 56	2e-17
d1me4a_	215	d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 56	6e-10
d2h7ja1	217	d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sa	2e-15
d2h7ja1	217	d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sa	1e-11
g1k3b.1	233	d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase	2e-15
g1k3b.1	233	d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase	1e-12
d1aeca_	218	d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwi	6e-14
d1aeca_	218	d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwi	4e-10
d1yala_	218	d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [	5e-13
d1yala_	218	d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [	3e-11
d1cqda_	216	d.3.1.1 (A:) Proline-specific cysteine protease {G	7e-12
d1cqda_	216	d.3.1.1 (A:) Proline-specific cysteine protease {G	2e-08
d1ppoa_	216	d.3.1.1 (A:) Caricain (protease omega) {Papaya (Ca	2e-11
d1ppoa_	216	d.3.1.1 (A:) Caricain (protease omega) {Papaya (Ca	4e-09
d1s4va_	224	d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor	3e-11
d1s4va_	224	d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor	3e-08
d1fh0a_	221	d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens	5e-11
d1fh0a_	221	d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens	3e-07
d1iwda_	215	d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia	1e-10
d1iwda_	215	d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia	4e-08
d1o0ea_	208	d.3.1.1 (A:) Ervatamin C {East indian rosebay (Erv	6e-10
d1o0ea_	208	d.3.1.1 (A:) Ervatamin C {East indian rosebay (Erv	3e-07
d2oula1	241	d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falcip	1e-09
d2oula1	241	d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falcip	1e-08
d1khqa_	212	d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId	3e-09
d1khqa_	212	d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId	1e-07
d3gcba_	458	d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (S	2e-05
d3gcba_	458	d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (S	2e-05
d2cb5a_	453	d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapi	7e-05
d2cb5a_	453	d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapi	8e-05

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} Length = 214

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.1 bits (199), Expect = 2e-19
 Identities = 43/126 (34%), Positives = 68/126 (53%), Gaps = 3/126 (2%)

Query: 3   LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSD 62
           LE+E DY Y+        C +   K K++           + +   L K GP+SV +N+ 
Sbjct: 81  LETEDDYSYQGHMQ---SCQFSAEKAKVYIQDSVELSQNEQKLAAWLAKRGPISVAINAF 137

Query: 63  LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIER 122
            +  Y     R     CSP+ + HAVLLVGYG++ D+P+W ++NSWG    ++G++ + R
Sbjct: 138 GMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHR 197

Query: 123 GNNACG 128
           G+ ACG
Sbjct: 198 GSGACG 203

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} Length = 214

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.7 bits (159), Expect = 8e-14
 Identities = 32/99 (32%), Positives = 52/99 (52%)

Query: 118 FKIERGNNACGKDFLHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPY 177
           F  E+               + +   L K GP+SV +N+  + FY     R     CSP+
Sbjct: 98  FSAEKAKVYIQDSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPW 157

Query: 178 DLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIE 216
            + HAVLLVGYG++ D+P+W ++NSWG    ++G++ + 
Sbjct: 158 LIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLH 196

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.9 bits (201), Expect = 2e-19
 Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 7/125 (5%)

Query: 6   EKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN--SDL 63
           E D P  +   E         + K +    +   N  + +   +YK GP+    +  SD 
Sbjct: 123 EGDTPKCSKICEPGYS-PTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDF 181

Query: 64  IHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG 123
           +   +G               GHA+ ++G+G ++  PYWLV NSW     D GFFKI RG
Sbjct: 182 LLYKSGVYQHV----TGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRG 237

Query: 124 NNACG 128
            + CG
Sbjct: 238 QDHCG 242

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.1 bits (160), Expect = 1e-13
 Identities = 27/102 (26%), Positives = 47/102 (46%), Gaps = 3/102 (2%)

Query: 116 GFFKIERGNNACGKDFLHFNGSET-MKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETC 174
           G+    + +   G +    + SE  +   +YK GP+    + +       + + ++    
Sbjct: 136 GYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHV--T 193

Query: 175 SPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIE 216
                GHA+ ++G+G ++  PYWLV NSW     D GFFKI 
Sbjct: 194 GEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKIL 235

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]} Length = 275

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.3 bits (199), Expect = 5e-19
 Identities = 32/140 (22%), Positives = 50/140 (35%), Gaps = 2/140 (1%)

Query: 1   MGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
              + E D   +     +FK  +      L+   D+   +G E M   +Y  GP+S  + 
Sbjct: 130 QAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGI- 188

Query: 61  SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
                           E      + H V + G+G  D   YW+VRNSWG    + G+ +I
Sbjct: 189 -MATERLANYTGGIYAEYQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRI 247

Query: 121 ERGNNACGKDFLHFNGSETM 140
                  GK   +    E  
Sbjct: 248 VTSTYKDGKGARYNLAIEEH 267

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]} Length = 275

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.4 bits (163), Expect = 5e-14
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 2/87 (2%)

Query: 129 KDFLHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGY 188
            D+   +G E M   +Y  GP+S G+ +          I    +  +  +  H V + G+
Sbjct: 163 GDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTTYIN--HVVSVAGW 220

Query: 189 GKQDDIPYWLVRNSWGPIGPDEGFFKI 215
           G  D   YW+VRNSWG    + G+ +I
Sbjct: 221 GISDGTEYWIVRNSWGEPWGERGWLRI 247

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.4 bits (197), Expect = 2e-18
 Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 8/131 (6%)

Query: 3   LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSD 62
           L+SE+ YPY      +  C Y+                  + + K +   GP+SV +++ 
Sbjct: 179 LDSEESYPY---EATEESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAG 235

Query: 63  LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGPDEGFF 118
                        +  CS  D+ H VL+VGYG    + D+  YWLV+NSWG      G+ 
Sbjct: 236 HESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYV 295

Query: 119 KIERG-NNACG 128
           K+ +   N CG
Sbjct: 296 KMAKDRRNHCG 306

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.1 bits (178), Expect = 6e-16
 Identities = 27/113 (23%), Positives = 45/113 (39%), Gaps = 4/113 (3%)

Query: 108 WGPIGPDEGFFKIERGNNACGKDFLHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPI 167
                 +   +  +                + + K +   GP+SV +++    F      
Sbjct: 186 PYEATEESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEG 245

Query: 168 RKNDETCSPYDLGHAVLLVGYG----KQDDIPYWLVRNSWGPIGPDEGFFKIE 216
              +  CS  D+ H VL+VGYG    + D+  YWLV+NSWG      G+ K+ 
Sbjct: 246 IYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMA 298

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (186), Expect = 1e-17
 Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 3/127 (2%)

Query: 3   LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSD 62
           ++SE  YPY      +        K     G   +     + +K+ + + GP+SV +++ 
Sbjct: 81  IDSEDAYPYVGQE--ESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDAS 138

Query: 63  LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIER 122
           L      +     DE+C+  +L HAVL VGYG Q    +W+++NSWG    ++G+  + R
Sbjct: 139 LTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMAR 198

Query: 123 G-NNACG 128
             NNACG
Sbjct: 199 NKNNACG 205

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (157), Expect = 2e-13
 Identities = 27/99 (27%), Positives = 51/99 (51%)

Query: 117 FFKIERGNNACGKDFLHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSP 176
           +    +     G   +     + +K+ + + GP+SV +++ L  F   +     DE+C+ 
Sbjct: 98  YNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNS 157

Query: 177 YDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 215
            +L HAVL VGYG Q    +W+++NSWG    ++G+  +
Sbjct: 158 DNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILM 196

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} Length = 302

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

 Score = 77.4 bits (189), Expect = 1e-17
 Identities = 20/128 (15%), Positives = 36/128 (28%), Gaps = 1/128 (0%)

Query: 1   MGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
            G+  E  Y Y        +    +  +  +      + N         +    + + + 
Sbjct: 163 NGVVQESYYRYVAREQSCRRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIK 222

Query: 61  SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
                 +                  HAV +VGY     + YW+VRNSW     D G+   
Sbjct: 223 DLDAFRHYD-GRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYF 281

Query: 121 ERGNNACG 128
               +   
Sbjct: 282 AANIDLMM 289

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} Length = 302

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

 Score = 62.8 bits (151), Expect = 2e-12
 Identities = 17/60 (28%), Positives = 22/60 (36%)

Query: 157 HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIE 216
            L  F +                 HAV +VGY     + YW+VRNSW     D G+    
Sbjct: 223 DLDAFRHYDGRTIIQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFA 282

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 75.8 bits (185), Expect = 2e-17
 Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 4/127 (3%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
            + +E  YPY +  G    C      V                +   L   GP++V +++
Sbjct: 82  AVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDA 141

Query: 62  DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIE 121
                Y G  +      C    L H VLLVGY     +PYW+++NSW     +EG+ +I 
Sbjct: 142 SSWMTYTGGVMTS----CVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIA 197

Query: 122 RGNNACG 128
           +G+N C 
Sbjct: 198 KGSNQCL 204

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 55.0 bits (131), Expect = 6e-10
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)

Query: 135 NGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDI 194
                +   L   GP++V +++     Y G  +      C    L H VLLVGY     +
Sbjct: 120 QDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTS----CVSEQLDHGVLLVGYNDSAAV 175

Query: 195 PYWLVRNSWGPIGPDEGFFKIE 216
           PYW+++NSW     +EG+ +I 
Sbjct: 176 PYWIIKNSWTTQWGEEGYIRIA 197

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]} Length = 217

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.4 bits (171), Expect = 2e-15
 Identities = 35/129 (27%), Positives = 64/129 (49%), Gaps = 4/129 (3%)

Query: 1   MGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
            G++S+  YPYK  +  +      K +    +    L +   + +K+ +   GP+SV ++
Sbjct: 82  KGIDSDASYPYKAMD--QKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVD 139

Query: 61  SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
           +     +        + +C+  ++ H VL+VGYG  +   YWLV+NSWG    +EG+ ++
Sbjct: 140 ARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRM 198

Query: 121 ERG-NNACG 128
            R   N CG
Sbjct: 199 ARNKGNHCG 207

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]} Length = 217

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (144), Expect = 1e-11
 Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 140 MKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLV 199
           +K+ +   GP+SVG+++    F+        + +C+  ++ H VL+VGYG  +   YWLV
Sbjct: 124 LKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCTQ-NVNHGVLVVGYGDLNGKEYWLV 182

Query: 200 RNSWGPIGPDEGFFKI 215
           +NSWG    +EG+ ++
Sbjct: 183 KNSWGHNFGEEGYIRM 198

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

 Score = 66.2 bits (160), Expect = 6e-14
 Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 7/129 (5%)

Query: 3   LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSD 62
           + +E++YPY   +GE      ++  V + T ++      +E   +    Y P+SV    D
Sbjct: 83  INTEENYPYTAQDGECNVDLQNEKYVTIDTYEN--VPYNNEWALQTAVTYQPVSV--ALD 138

Query: 63  LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIER 122
              D                 + HAV +VGYG +  I YW+V+NSW     +EG+ +I R
Sbjct: 139 AAGDAFKQYSSGIFTGPCGTAIDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILR 198

Query: 123 ---GNNACG 128
              G   CG
Sbjct: 199 NVGGAGTCG 207

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

 Score = 55.4 bits (132), Expect = 4e-10
 Identities = 25/141 (17%), Positives = 46/141 (32%), Gaps = 2/141 (1%)

Query: 75  NDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFLHF 134
             +     + G+      +   +          +     +                    
Sbjct: 58  RTQNTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDGECNVDLQNEKYVTIDTYENVP 117

Query: 135 NGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDI 194
             +E   +    Y P+SV L++    F   +             + HAV +VGYG +  I
Sbjct: 118 YNNEWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTG--PCGTAIDHAVTIVGYGTEGGI 175

Query: 195 PYWLVRNSWGPIGPDEGFFKI 215
            YW+V+NSW     +EG+ +I
Sbjct: 176 DYWIVKNSWDTTWGEEGYMRI 196

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 63.8 bits (154), Expect = 5e-13
 Identities = 27/127 (21%), Positives = 44/127 (34%), Gaps = 8/127 (6%)

Query: 6   EKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIH 65
            K YPY+    +              TG   +  N   +    L       ++       
Sbjct: 83  SKVYPYQAKQYKCRAT-DKPGPKVKITGYKRVPSNCETSFLGALANQPLSVLVEAGGKPF 141

Query: 66  DYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG-- 123
               + +           L HAV  VGYG  D   Y +++NSWGP   ++G+ +++R   
Sbjct: 142 QLYKSGVFDG---PCGTKLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSG 198

Query: 124 --NNACG 128
                CG
Sbjct: 199 NSQGTCG 205

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 58.4 bits (140), Expect = 3e-11
 Identities = 29/152 (19%), Positives = 51/152 (33%), Gaps = 3/152 (1%)

Query: 65  HDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN 124
            + +   +   D+       G+    + Y   + +    V              K     
Sbjct: 46  LELSEQELVDCDKHSYGCKGGYQTTSLQYVANNGVHTSKVYPYQAKQYKCRATDKPGPKV 105

Query: 125 NACGKDFLHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVL 184
              G   +  N   +    L    PLSV + +    F          +      L HAV 
Sbjct: 106 KITGYKRVPSNCETSFLGAL-ANQPLSVLVEAGGKPFQL--YKSGVFDGPCGTKLDHAVT 162

Query: 185 LVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIE 216
            VGYG  D   Y +++NSWGP   ++G+ +++
Sbjct: 163 AVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLK 194

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

 Score = 60.8 bits (146), Expect = 7e-12
 Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 9/131 (6%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
           G+ SE+ YPY+   G+   C    +   +         + +E   +      P+SV +++
Sbjct: 80  GINSEETYPYR---GQDGICNSTVNAPVVSIDSYENVPSHNEQSLQKAVANQPVSVTMDA 136

Query: 62  DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIE 121
                                   HA+ +VGYG ++D  +W+V+NSWG    + G+ + E
Sbjct: 137 AGRDFQLYRSGIFTG--SCNISANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAE 194

Query: 122 RG----NNACG 128
           R     +  CG
Sbjct: 195 RNIENPDGKCG 205

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

 Score = 51.2 bits (121), Expect = 2e-08
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 133 HFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 192
             + +E   +      P+SV +++    F                   HA+ +VGYG ++
Sbjct: 113 VPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTG--SCNISANHALTVVGYGTEN 170

Query: 193 DIPYWLVRNSWGPIGPDEGFFKIE 216
           D  +W+V+NSWG    + G+ + E
Sbjct: 171 DKDFWIVKNSWGKNWGESGYIRAE 194

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 59.2 bits (142), Expect = 2e-11
 Identities = 33/129 (25%), Positives = 46/129 (35%), Gaps = 5/129 (3%)

Query: 1   MGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
            G+     YPYK   G           VK          N    +  I  +   + V   
Sbjct: 78  NGIHLRSKYPYKAKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESK 137

Query: 61  SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI 120
                 Y G       E      + HAV  VGYGK     Y L++NSWG    ++G+ +I
Sbjct: 138 GRPFQLYKGGIF----EGPCGTKVDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRI 193

Query: 121 ERG-NNACG 128
           +R   N+ G
Sbjct: 194 KRAPGNSPG 202

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 52.7 bits (125), Expect = 4e-09
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 2/77 (2%)

Query: 140 MKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLV 199
                    P+SV + S    F                 + HAV  VGYGK     Y L+
Sbjct: 120 NLLNAIAKQPVSVVVESKGRPFQLYKGGIFEG--PCGTKVDHAVTAVGYGKSGGKGYILI 177

Query: 200 RNSWGPIGPDEGFFKIE 216
           +NSWG    ++G+ +I+
Sbjct: 178 KNSWGTAWGEKGYIRIK 194

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

 Score = 58.8 bits (141), Expect = 3e-11
 Identities = 30/131 (22%), Positives = 56/131 (42%), Gaps = 9/131 (6%)

Query: 3   LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSD 62
           + +E +YPY+  +G       +   V +   ++    + +  +K +  +   +++     
Sbjct: 83  ITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVPENDENALLKAVANQPVSVAIDAGGS 142

Query: 63  LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDD-IPYWLVRNSWGPIGPDEGFFKIE 121
               Y+              +L H V +VGYG   D   YW V+NSWGP   ++G+ ++E
Sbjct: 143 DFQFYSEGVFTG----SCGTELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRME 198

Query: 122 RG----NNACG 128
           RG       CG
Sbjct: 199 RGISDKEGLCG 209

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

 Score = 50.0 bits (118), Expect = 3e-08
 Identities = 27/143 (18%), Positives = 46/143 (32%), Gaps = 3/143 (2%)

Query: 75  NDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFLHF 134
           + +     + G       + KQ           +          K      +        
Sbjct: 58  DTDQNQGCNGGLMDYAFEFIKQRGGITTEANYPYEAYDGTCDVSKENAPAVSIDGHENVP 117

Query: 135 NGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDD- 193
              E          P+SV +++    F   +            +L H V +VGYG   D 
Sbjct: 118 ENDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTG--SCGTELDHGVAIVGYGTTIDG 175

Query: 194 IPYWLVRNSWGPIGPDEGFFKIE 216
             YW V+NSWGP   ++G+ ++E
Sbjct: 176 TKYWTVKNSWGPEWGEKGYIRME 198

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 5e-11
 Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 7/131 (5%)

Query: 3   LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLS--VLLN 60
           L+SE+ YPY     ++      ++ V   TG   +     + + K +   GP+S  +   
Sbjct: 83  LDSEESYPYVAV--DEICKYRPENSVAQDTGFTVVAPGKEKALMKAVATVGPISVAMDAG 140

Query: 61  SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGY--GKQDDIPYWLVRNSWGPIGPDEGFF 118
                 Y      + D +    D G  V+  G+     D+  YWLV+NSWGP     G+ 
Sbjct: 141 HSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYV 200

Query: 119 KIERG-NNACG 128
           KI +  NN CG
Sbjct: 201 KIAKDKNNHCG 211

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (111), Expect = 3e-07
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 4/86 (4%)

Query: 135 NGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGY----GK 190
              + + K +   GP+SV +++    F         +  CS  +L H VL+VGY      
Sbjct: 118 GKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGAN 177

Query: 191 QDDIPYWLVRNSWGPIGPDEGFFKIE 216
            D+  YWLV+NSWGP     G+ KI 
Sbjct: 178 SDNSKYWLVKNSWGPEWGSNGYVKIA 203

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

 Score = 57.0 bits (136), Expect = 1e-10
 Identities = 28/130 (21%), Positives = 54/130 (41%), Gaps = 10/130 (7%)

Query: 3   LESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSD 62
           ++++++YPY   +  +  C   + +V    G   +  N    ++  +        +  + 
Sbjct: 81  IDTQQNYPY---SAVQGSCKPYRLRVVSINGFQRVTRNNESALQSAVASQPVSVTVEAAG 137

Query: 63  LIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIER 122
               +  + I       +     H V++VGYG Q    YW+VRNSWG    ++G+  +ER
Sbjct: 138 APFQHYSSGIFTGPCGTAQN---HGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMER 194

Query: 123 G----NNACG 128
                   CG
Sbjct: 195 NVASSAGLCG 204

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

 Score = 49.6 bits (117), Expect = 4e-08
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 133 HFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQD 192
               +E+  +      P+SV + +    F + +               H V++VGYG Q 
Sbjct: 112 VTRNNESALQSAVASQPVSVTVEAAGAPFQHYSSGIFTG--PCGTAQNHGVVIVGYGTQS 169

Query: 193 DIPYWLVRNSWGPIGPDEGFFKIE 216
              YW+VRNSWG    ++G+  +E
Sbjct: 170 GKNYWIVRNSWGQNWGNQGYIWME 193

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]} Length = 208

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

 Score = 55.0 bits (131), Expect = 6e-10
 Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 13/129 (10%)

Query: 2   GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNS 61
           G++++ +YPYK   G    C     KV    G + + F     +K+ +        +  S
Sbjct: 80  GIDTQANYPYKAVQG---PCQAAS-KVVSIDGYNGVPFCNEXALKQAVAVQPSTVAIDAS 135

Query: 62  DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIE 121
                   + I           L H V +VGY       YW+VRNSWG    ++G+ ++ 
Sbjct: 136 SAQFQQYSSGIFSG---PCGTKLNHGVTIVGYQA----NYWIVRNSWGRYWGEKGYIRML 188

Query: 122 R--GNNACG 128
           R  G   CG
Sbjct: 189 RVGGCGLCG 197

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]} Length = 208

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

 Score = 47.3 bits (111), Expect = 3e-07
 Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 6/107 (5%)

Query: 110 PIGPDEGFFKIERGNNACGKDFLHFNGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRK 169
           P    +G  +      +          +E   K      P +V +++    F   +    
Sbjct: 88  PYKAVQGPCQAASKVVSIDGYNGVPFCNEXALKQAVAVQPSTVAIDASSAQFQQYSSGIF 147

Query: 170 NDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIE 216
           +        L H V +VGY       YW+VRNSWG    ++G+ ++ 
Sbjct: 148 SG--PCGTKLNHGVTIVGYQA----NYWIVRNSWGRYWGEKGYIRML 188

>d2oula1 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falciparum [TaxId: 5833]} Length = 241

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Falcipain 2
species: Plasmodium falciparum [TaxId: 5833]

 Score = 54.6 bits (130), Expect = 1e-09
 Identities = 32/142 (22%), Positives = 51/142 (35%), Gaps = 21/142 (14%)

Query: 1   MGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLN 60
            G+  + DYPY +             K  +              +K+ L   GP+S+ + 
Sbjct: 96  GGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPD----NKLKEALRFLGPISISVA 151

Query: 61  SDLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYG----------KQDDIPYWLVRNSWGP 110
                 +    I           L HAV+LVG+G          K +   Y++++NSWG 
Sbjct: 152 VSDDFAFYKEGIFDG---ECGDQLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQ 208

Query: 111 IGPDEGFFKIERGNNA----CG 128
              + GF  IE   +     CG
Sbjct: 209 QWGERGFINIETDESGLMRKCG 230

>d2oula1 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falciparum [TaxId: 5833]} Length = 241

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Falcipain 2
species: Plasmodium falciparum [TaxId: 5833]

 Score = 51.5 bits (122), Expect = 1e-08
 Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 13/134 (9%)

Query: 93  YGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFLHFNGSETMKKILYKYGPLSV 152
           +    ++        +  +        I+R     G           +K+ L   GP+S+
Sbjct: 89  FEDMIELGGICPDGDYPYVSDAPNLCNIDRCTEKYGIKNYLSVPDNKLKEALRFLGPISI 148

Query: 153 GLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYG----------KQDDIPYWLVRNS 202
            +       +    I           L HAV+LVG+G          K +   Y++++NS
Sbjct: 149 SVAVSDDFAFYKEGIFDG---ECGDQLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNS 205

Query: 203 WGPIGPDEGFFKIE 216
           WG    + GF  IE
Sbjct: 206 WGQQWGERGFINIE 219

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 52.7 bits (125), Expect = 3e-09
 Identities = 29/127 (22%), Positives = 43/127 (33%), Gaps = 12/127 (9%)

Query: 6   EKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSDLIH 65
              YPY+                K    +    +N    +        P+SV+L +    
Sbjct: 83  RNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLY--SIANQPVSVVLEAAGKD 140

Query: 66  DYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNN 125
                         +  D  HAV  VGYG      Y L++NSWG    + G+ +I+RG  
Sbjct: 141 FQLYRGGIFVGPCGNKVD--HAVAAVGYGP----NYILIKNSWGTGWGENGYIRIKRGTG 194

Query: 126 A----CG 128
                CG
Sbjct: 195 NSYGVCG 201

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 48.5 bits (114), Expect = 1e-07
 Identities = 28/141 (19%), Positives = 43/141 (30%), Gaps = 9/141 (6%)

Query: 79  CSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFLHFNGSE 138
           C     G          Q    Y +   +  P    + + +         K         
Sbjct: 56  CDRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQP 115

Query: 139 TMKKILYK---YGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIP 195
             +  L       P+SV L +    F             +  D  HAV  VGYG      
Sbjct: 116 YNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVD--HAVAAVGYGP----N 169

Query: 196 YWLVRNSWGPIGPDEGFFKIE 216
           Y L++NSWG    + G+ +I+
Sbjct: 170 YILIKNSWGTGWGENGYIRIK 190

>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]} Length = 458

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 3/38 (7%)

Query: 86  HAVLLVGYGKQDD---IPYWLVRNSWGPIGPDEGFFKI 120
           HA+L+ G    +       + V NSWG     +G + +
Sbjct: 374 HAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVM 411

>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]} Length = 458

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]

 Score = 42.6 bits (100), Expect = 2e-05
 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 3/38 (7%)

Query: 181 HAVLLVGYGKQDD---IPYWLVRNSWGPIGPDEGFFKI 215
           HA+L+ G    +       + V NSWG     +G + +
Sbjct: 374 HAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVM 411

>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 453

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (96), Expect = 7e-05
 Identities = 18/85 (21%), Positives = 32/85 (37%), Gaps = 8/85 (9%)

Query: 41  GSETMKKILYKYGPLSV-LLNSDLIHDYNGTPIRKND--ETCSPYDLGHAVLLVGYGKQD 97
           G +  K    K G   + L + +L+   +   + K +         + HA+      ++D
Sbjct: 324 GCDVGKHFNSKLGLSDMNLYDHELVFGVSLKNMNKAERLTFGE-SLMTHAMTFTAVSEKD 382

Query: 98  D----IPYWLVRNSWGPIGPDEGFF 118
           D       W V NSWG     +G+ 
Sbjct: 383 DQDGAFTKWRVENSWGEDHGHKGYL 407

>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 453

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (95), Expect = 8e-05
 Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 4/37 (10%)

Query: 181 HAVLLVGYGKQDD----IPYWLVRNSWGPIGPDEGFF 213
           HA+      ++DD       W V NSWG     +G+ 
Sbjct: 371 HAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYL 407

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	233
d1cs8a_	316	(Pro)cathepsin L {Human (Homo sapiens) [TaxId: 960	99.94
g1k3b.1	233	Cathepsin C (dipeptidyl peptidase I), catalytic do	99.94
d1me4a_	215	Cruzain {Trypanosoma cruzi [TaxId: 5693]}	99.94
g8pch.1	228	Cathepsin H {Pig (Sus scrofa) [TaxId: 9823]}	99.94
d1xkga1	302	Major mite fecal allergen der p 1 {House-dust mite	99.93
d1deua_	275	(Pro)cathepsin X {Human (Homo sapiens) [TaxId: 960	99.93
d1m6da_	214	Cathepsin F {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2h7ja1	217	(Pro)cathepsin S {Human (Homo sapiens) [TaxId: 960	99.92
d1cs8a_	316	(Pro)cathepsin L {Human (Homo sapiens) [TaxId: 960	99.92
d2r6na1	215	(Pro)cathepsin K {Human (Homo sapiens) [TaxId: 960	99.92
d1m6da_	214	Cathepsin F {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1yala_	218	Chymopapain {Papaya (Carica papaya) [TaxId: 3649]}	99.92
d1gmya_	254	(Pro)cathepsin B {Human (Homo sapiens) [TaxId: 960	99.92
g8pch.1	228	Cathepsin H {Pig (Sus scrofa) [TaxId: 9823]}	99.92
d1me4a_	215	Cruzain {Trypanosoma cruzi [TaxId: 5693]}	99.91
d1deua_	275	(Pro)cathepsin X {Human (Homo sapiens) [TaxId: 960	99.91
d2oula1	241	Falcipain 2 {Plasmodium falciparum [TaxId: 5833]}	99.91
g1k3b.1	233	Cathepsin C (dipeptidyl peptidase I), catalytic do	99.91
d1yala_	218	Chymopapain {Papaya (Carica papaya) [TaxId: 3649]}	99.91
d1ppoa_	216	Caricain (protease omega) {Papaya (Carica papaya)	99.91
d2oula1	241	Falcipain 2 {Plasmodium falciparum [TaxId: 5833]}	99.91
d2h7ja1	217	(Pro)cathepsin S {Human (Homo sapiens) [TaxId: 960	99.91
d1gmya_	254	(Pro)cathepsin B {Human (Homo sapiens) [TaxId: 960	99.9
d1fh0a_	221	(Pro)cathepsin V {Human (Homo sapiens) [TaxId: 960	99.9
d2r6na1	215	(Pro)cathepsin K {Human (Homo sapiens) [TaxId: 960	99.9
d1ppoa_	216	Caricain (protease omega) {Papaya (Carica papaya)	99.9
d1aeca_	218	Actinidin {Chinese gooseberry or kiwifruit (Actini	99.9
d1xkga1	302	Major mite fecal allergen der p 1 {House-dust mite	99.9
d1aeca_	218	Actinidin {Chinese gooseberry or kiwifruit (Actini	99.9
d1cqda_	216	Proline-specific cysteine protease {Ginger rhizome	99.89
d1cqda_	216	Proline-specific cysteine protease {Ginger rhizome	99.89
d1s4va_	224	Vignain (bean endopeptidase) {Castor bean (Ricinus	99.88
d1iwda_	215	Ervatamin B {Adam's apple (Ervatamia coronaria) [T	99.88
d1fh0a_	221	(Pro)cathepsin V {Human (Homo sapiens) [TaxId: 960	99.88
d1khqa_	212	Papain {Papaya (Carica papaya) [TaxId: 3649]}	99.87
d1s4va_	224	Vignain (bean endopeptidase) {Castor bean (Ricinus	99.87
d1khqa_	212	Papain {Papaya (Carica papaya) [TaxId: 3649]}	99.86
d1iwda_	215	Ervatamin B {Adam's apple (Ervatamia coronaria) [T	99.86
d1o0ea_	208	Ervatamin C {East indian rosebay (Ervatamia corona	99.85
d1o0ea_	208	Ervatamin C {East indian rosebay (Ervatamia corona	99.85
d3gcba_	458	Bleomycin hydrolase {Baker's yeast (Saccharomyces	99.03
d2cb5a_	453	Bleomycin hydrolase {Human (Homo sapiens) [TaxId:	98.64
d3gcba_	458	Bleomycin hydrolase {Baker's yeast (Saccharomyces	98.34
d2cb5a_	453	Bleomycin hydrolase {Human (Homo sapiens) [TaxId:	97.79

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.5e-27  Score=205.01  Aligned_cols=126  Identities=32%  Similarity=0.613  Sum_probs=109.8

Q ss_pred             CCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC-CHHHHHHHHHhcCCEEEEEecC--CCCCcCCceeeCCCCC
Q psy282            2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN-GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDET   78 (233)
Q Consensus         2 Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~-~~~~i~~~l~~~GPv~v~i~~~--~f~~y~~Gi~~~~~~~   78 (233)
                      ++.+|++|||.+...   .|...+......+.. +.... ++++|+++|+.+|||+|+|++.  +|+.|++|||..+  .
T Consensus       178 ~~~~e~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~gpv~v~i~~~~~~f~~y~~Gi~~~~--~  251 (316)
T d1cs8a_         178 GLDSEESYPYEATEE---SCKYNPKYSVANDAG-FVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEP--D  251 (316)
T ss_dssp             CEEBTTTSCCCSSCC---CCCCCGGGEEECCCC-EEECCSCHHHHHHHHHHHCCEEEEECCCSHHHHTEEEEEECCT--T
T ss_pred             ccccccccccccccc---ccccccccccccccc-cccccCcHHHHHHHHHHhCCeEEEEEeccchhccccCCcccCC--C
Confidence            467899999998888   787666666677777 77666 9999999999999999999984  7999999999887  6


Q ss_pred             CCCCCCCcEEEEEeeecc----CCccEEEEecCCCCCCCCCcceeeeccc-cccCccccc
Q psy282           79 CSPYDLGHAVLLVGYGKQ----DDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGKDFLH  133 (233)
Q Consensus        79 c~~~~~~H~v~ivG~g~~----~~~~ywivknswg~~wge~gy~~~~~~~-~~Cgi~~~~  133 (233)
                      |+...+||+|+|||||.+    ++.+|||||||||+.|||+||+|+.++. +.|+|.+.+
T Consensus       252 c~~~~~nHaV~iVGyG~d~~~~~g~~YWIikNSWG~~WGe~GY~ri~r~~~n~CGI~~~~  311 (316)
T d1cs8a_         252 CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAA  311 (316)
T ss_dssp             CCSSCCCEEEEEEEEEEECCSSCCEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSC
T ss_pred             CCCCcCCEEEEEEEEcccccCCCCCeEEEEEeCCCCCcccCCEEEEeeCCCCcCccCCee
Confidence            887889999999999965    5789999999999999999999999985 899998654

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.94  E-value=1.3e-26  Score=189.25  Aligned_cols=127  Identities=27%  Similarity=0.558  Sum_probs=107.4

Q ss_pred             CCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC-CHHHHHHHHHhcCCEEEEEecCCCCCcCCceeeCCCCCCC
Q psy282            2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN-GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCS   80 (233)
Q Consensus         2 Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~-~~~~i~~~l~~~GPv~v~i~~~~f~~y~~Gi~~~~~~~c~   80 (233)
                      ++.++++|||...+....+|.........++.. +..+. +.+.||++|+++|||++.+.+..|+.|+++++..    |+
T Consensus        82 ~~~~~~~ypy~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ik~~i~~~gpv~~~~~~~~~~~~~~~~~~~----~~  156 (215)
T d1me4a_          82 AVYTEDSYPYASGEGISPPCTTSGHTVGATITG-HVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTS----CV  156 (215)
T ss_dssp             EEEBTTTSCCCCTTSCCCCCCCSSCCEEEECCE-EEECCSCHHHHHHHHHHHCCEEEEECCTTGGGCCSSEECS----CC
T ss_pred             ccccCcccCccccccccccccccccccceEeee-eeeccccHHHHHHHHHhcCceeEEEEeeeecccccccccC----Cc
Confidence            578899999998776222222233345677777 77777 8999999999999999999998899999999965    45


Q ss_pred             CCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccccccCccccc
Q psy282           81 PYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFLH  133 (233)
Q Consensus        81 ~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~~~Cgi~~~~  133 (233)
                      ....+|||+|||||.+++.+|||||||||+.||++||+|++++++.|+|+...
T Consensus       157 ~~~~~Hav~IVGyg~~~~~~ywivrNSWG~~WGd~Gy~~i~~g~n~cgI~~~~  209 (215)
T d1me4a_         157 SEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEA  209 (215)
T ss_dssp             CSCCCEEEEEEEEESSSSSCEEEEECSBCTTSTBTTEEEEESSSCGGGTTSSE
T ss_pred             cccceeEEEEEEccccCCceEEEEEcCCCCCcccCCEEEEECCCCccccCCce
Confidence            56789999999999999999999999999999999999999999999998754

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

Probab=99.93  E-value=1e-26  Score=199.90  Aligned_cols=127  Identities=20%  Similarity=0.370  Sum_probs=107.3

Q ss_pred             CCCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC--CHHHHHHHHHhcC-CEEEEEecC---CCCCcCCceeeC
Q psy282            1 MGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYG-PLSVLLNSD---LIHDYNGTPIRK   74 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~--~~~~i~~~l~~~G-Pv~v~i~~~---~f~~y~~Gi~~~   74 (233)
                      +||++|++|||.+.++   .|+... ...+.+.+ +..+.  ++++|+++|+..+ |+++.+.+.   .|+.|++||+..
T Consensus       163 ~Gi~~e~~yPY~~~~~---~C~~~~-~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~gi~~~  237 (302)
T d1xkga1         163 NGVVQESYYRYVAREQ---SCRRPN-AQRFGISN-YCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQ  237 (302)
T ss_dssp             HCEEBGGGSCCCSSCC---CCCCCS-SCEECCSE-EEECCSCCHHHHHHHHHHHCCCEEEEEEESCHHHHHTCCSSSCBC
T ss_pred             Ccccchhhcccccccc---cccccc-cccceeee-eeeecCchHHHHHHhhhhcccccceeecccccchhhccccceeec
Confidence            4899999999999988   898544 35577888 77765  8999999998754 555555542   788999999987


Q ss_pred             CCCCCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccccccCcccccc
Q psy282           75 NDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFLHF  134 (233)
Q Consensus        75 ~~~~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~~~Cgi~~~~~  134 (233)
                      .  .|+....+|||+|||||++++.+|||||||||+.|||+||+|++++.+.|++.+++.
T Consensus       238 ~--~~~~~~~~HaV~iVGyg~~~g~~YWivkNSWG~~WGe~GY~~i~~~~n~cgi~~~~~  295 (302)
T d1xkga1         238 R--DNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPY  295 (302)
T ss_dssp             C--CCSSCCEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTCCE
T ss_pred             C--CCCCCcCCEEEEEEEEeccCCeEEEEEEcCCCCchhcCCEEEEECCCCeeccCCCcE
Confidence            7  577777899999999999999999999999999999999999999999999987654

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.6e-26  Score=195.68  Aligned_cols=125  Identities=26%  Similarity=0.462  Sum_probs=102.6

Q ss_pred             CCCCCCCCCCCCCCCCCcc------------ccccCCCceeEEeCCceEEeCCHHHHHHHHHhcCCEEEEEecC-CCCCc
Q psy282            1 MGLESEKDYPYKNANGEKF------------KCAYDKSKVKLFTGKDFLHFNGSETMKKILYKYGPLSVLLNSD-LIHDY   67 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~------------~C~~~~~~~~~~i~~~~~~v~~~~~i~~~l~~~GPv~v~i~~~-~f~~y   67 (233)
                      +|+++|++|||........            .|........+++.+ |..+.+++.||++|+++|||+++|++. +|++|
T Consensus       119 ~G~~~e~~~PY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~e~ik~~l~~~GPv~v~~~~~~~f~~y  197 (275)
T d1deua_         119 HGIPDETCNNYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGD-YGSLSGREKMMAEIYANGPISCGIMATERLANY  197 (275)
T ss_dssp             TCBCBGGGSCCCSSCCCCCHHHHSEEEEETTEEEECSSCCCBCEEE-EEEECSHHHHHHHHHHHCCEEEEECCCHHHHTC
T ss_pred             ccccccccccccccCCCcccccccCcccccceeeeccceeEEEeCc-eeecCcHHHHHHHHHhCCCcEEEEEeccchhcc
Confidence            5899999999997765110            111112223455666 777778899999999999999999995 89999


Q ss_pred             CCceeeCCCCCCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccccccCc
Q psy282           68 NGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGK  129 (233)
Q Consensus        68 ~~Gi~~~~~~~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~~~Cgi  129 (233)
                      ++|||...   |+...++|||+|||||.+++.+|||||||||+.||++||+|+.++.+.|+.
T Consensus       198 ~~Gi~~~~---~~~~~~~HAV~IVGyg~~~g~~ywivrNSWG~~WGd~Gyf~I~~~~~~~~~  256 (275)
T d1deua_         198 TGGIYAEY---QDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGK  256 (275)
T ss_dssp             CSSEECBC---CSCCCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECTTHHHHT
T ss_pred             CCCcccCc---cccccCCeEEEEEEEeccCCcEEEEEECCCCCCcccCCEEEEECCCCCCCc
Confidence            99999876   566778999999999999999999999999999999999999998777654

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.9e-26  Score=187.19  Aligned_cols=128  Identities=34%  Similarity=0.727  Sum_probs=102.4

Q ss_pred             CCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC-CHHHHHHHHHhcCCEEEEEecCCCCCcCCceeeCCCCCCC
Q psy282            2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN-GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDETCS   80 (233)
Q Consensus         2 Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~-~~~~i~~~l~~~GPv~v~i~~~~f~~y~~Gi~~~~~~~c~   80 (233)
                      +++.|.+|||.+...   .|..........+.. +.... ++++||++|+++|||+++|.+..|+++..|++....+.|+
T Consensus        80 ~~~~e~~~py~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~ik~~i~~~gpv~~~~~~~~~~~~~~g~~~~~~~~~~  155 (214)
T d1m6da_          80 GLETEDDYSYQGHMQ---SCQFSAEKAKVYIQD-SVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCS  155 (214)
T ss_dssp             CBCBTTTSCCCSSCC---CCCCCGGGCCBCCSE-EEECCSCHHHHHHHHHHHCCEEEEECTHHHHHCCSSEECCCGGGSC
T ss_pred             cccccccccccCccC---cccccccccceeeec-ccccccCHHHHHHHHHhcCCeEEEEEEEehhhccCCccccccCCCC
Confidence            478899999998877   666444444444545 44444 8999999999999999999996555555555433222466


Q ss_pred             CCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccccccCccccc
Q psy282           81 PYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGNNACGKDFLH  133 (233)
Q Consensus        81 ~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~~~Cgi~~~~  133 (233)
                      ...++|||+|||||.+.+.+|||||||||+.|||+||+|+.++.+.|+|++.+
T Consensus       156 ~~~~~HaV~iVGyg~~~~~~ywivkNSWG~~WGd~Gy~~i~~g~n~cgI~~~~  208 (214)
T d1m6da_         156 PWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMA  208 (214)
T ss_dssp             TTCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSCGGGTTTTC
T ss_pred             CcccceeEEEEcccccCCceEEEEECCCCCccccCCEEEEEcCCCccccccee
Confidence            77889999999999999999999999999999999999999998999998764

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-25  Score=183.58  Aligned_cols=127  Identities=30%  Similarity=0.608  Sum_probs=109.8

Q ss_pred             CCCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEec-C-CCCCcCCceeeCCC
Q psy282            1 MGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNS-D-LIHDYNGTPIRKND   76 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~-~-~f~~y~~Gi~~~~~   76 (233)
                      .|++++++|||.....   .|.........++.. +....  .++.|+++|+..|||++++.. . +|+.|++|||..+ 
T Consensus        82 ~g~~~~~~~p~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~g~v~~~~~~~~~~f~~~~~gi~~~~-  156 (217)
T d2h7ja1          82 KGIDSDASYPYKAMDQ---KCQYDSKYRAATCSK-YTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEP-  156 (217)
T ss_dssp             TCEEBTTTSCCCSSCC---CCCCCGGGEEECCCE-EEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSCBCCT-
T ss_pred             ccccccccCCCccccc---ccccccccccceeee-eeccCccHHHHHHHHhhcCceEEEEEeeehhhhcccCCcceeCC-
Confidence            3788999999998877   666666667777888 77776  899999999999999999876 3 8999999999887 


Q ss_pred             CCCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccc-cccCcccccc
Q psy282           77 ETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGKDFLHF  134 (233)
Q Consensus        77 ~~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~-~~Cgi~~~~~  134 (233)
                        +....++|||+|||||.+.+.+|||||||||+.||++||+|+.++. +.|+|++.+.
T Consensus       157 --~~~~~~~Hav~iVGy~~~~~~~ywivrNSWG~~WG~~Gy~~i~~~~~n~cgi~~~~~  213 (217)
T d2h7ja1         157 --SCTQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPS  213 (217)
T ss_dssp             --TCCSCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCE
T ss_pred             --CCCCCCCeEEEEEecccCCCceEEEEEcCCCCCcccCCEEEEecCCCCcCCcccccc
Confidence              3355689999999999999999999999999999999999999986 8999987543

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-26  Score=200.78  Aligned_cols=92  Identities=30%  Similarity=0.561  Sum_probs=77.1

Q ss_pred             cCccceeeeeecccceEEEEecc--ccccccCcceecCCCCCCCCCCCEEEEEEEeeec----CCcCEEEEEcCCCCCCC
Q psy282          135 NGSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ----DDIPYWLVRNSWGPIGP  208 (233)
Q Consensus       135 ~~e~~i~~~l~~~GPv~v~i~~~--~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~----~~~~ywivkNSWg~~WG  208 (233)
                      .+++.++++|...|||++++++.  .|++|++||+.  ...|+...++|||+|||||.+    ++++|||||||||++||
T Consensus       213 ~~~~~l~~~l~~~gpv~v~i~~~~~~f~~y~~Gi~~--~~~c~~~~~nHaV~iVGyG~d~~~~~g~~YWIikNSWG~~WG  290 (316)
T d1cs8a_         213 KQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYF--EPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWG  290 (316)
T ss_dssp             SCHHHHHHHHHHHCCEEEEECCCSHHHHTEEEEEEC--CTTCCSSCCCEEEEEEEEEEECCSSCCEEEEEEECSBCTTST
T ss_pred             CcHHHHHHHHHHhCCeEEEEEeccchhccccCCccc--CCCCCCCcCCEEEEEEEEcccccCCCCCeEEEEEeCCCCCcc
Confidence            35677899999999999999983  68999999986  557887778999999999964    57899999999999999


Q ss_pred             CCcEEEEEccC-CCCccCCCC
Q psy282          209 DEGFFKIEHTL-RSHLTHDIP  228 (233)
Q Consensus       209 ~~Gy~~i~~~~-~~~~~~~~~  228 (233)
                      |+|||||+|+. +.|.+...+
T Consensus       291 e~GY~ri~r~~~n~CGI~~~~  311 (316)
T d1cs8a_         291 MGGYVKMAKDRRNHCGIASAA  311 (316)
T ss_dssp             BTTEEEEECSSSSGGGTTTSC
T ss_pred             cCCEEEEeeCCCCcCccCCee
Confidence            99999999986 444333333

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.8e-25  Score=181.38  Aligned_cols=126  Identities=29%  Similarity=0.598  Sum_probs=109.1

Q ss_pred             CCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEec-C-CCCCcCCceeeCCCC
Q psy282            2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNS-D-LIHDYNGTPIRKNDE   77 (233)
Q Consensus         2 Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~-~-~f~~y~~Gi~~~~~~   77 (233)
                      ++.+|..|||.....   .|...+......+.. +...+  +.++||++|.++|||++.+.. . +|+.|++||+...  
T Consensus        80 ~~~~~~~y~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~ik~~~~~~g~v~~~~~~~~~~f~~y~~gi~~~~--  153 (215)
T d2r6na1          80 GIDSEDAYPYVGQEE---SCMYNPTGKAAKCRG-YREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDE--  153 (215)
T ss_dssp             CEEBTTTSCCCSSCC---CCCCCGGGEEECCCE-EEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECCT--
T ss_pred             ccccccCCCcccccc---cccccccccceeecc-eeeccccHHHHHHHhhcccccEEEEEEeeechhcccCCCcccCC--
Confidence            367899999988766   566556666677777 77765  899999999999999998876 3 8999999999876  


Q ss_pred             CCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccc-cccCccccc
Q psy282           78 TCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGKDFLH  133 (233)
Q Consensus        78 ~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~-~~Cgi~~~~  133 (233)
                      .|+....+|+|+|||||++.+.+|||||||||+.|||+||+|++++. +.|+|.+.+
T Consensus       154 ~~~~~~~~Hav~iVGy~~~~~~~ywivrNSWG~~WGe~Gy~~i~~~~~n~Cgi~~~~  210 (215)
T d2r6na1         154 SCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLA  210 (215)
T ss_dssp             TCCTTCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSSSGGGTTSSC
T ss_pred             CCCCCCCCeeEEEEEeeccCCCcEEEEEcCCCCCcccCCeEEEEeCCCCcCcccCcc
Confidence            58888899999999999999999999999999999999999999985 799998754

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.8e-26  Score=188.46  Aligned_cols=93  Identities=32%  Similarity=0.680  Sum_probs=78.1

Q ss_pred             cCccceeeeeecccceEEEEeccccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcEEE
Q psy282          135 NGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK  214 (233)
Q Consensus       135 ~~e~~i~~~l~~~GPv~v~i~~~~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy~~  214 (233)
                      .+...+++++.++|||+++|.+..++++..|+.......|+...++|||+|||||++++++|||||||||+.|||+||||
T Consensus       115 ~~~~~ik~~i~~~gpv~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~HaV~iVGyg~~~~~~ywivkNSWG~~WGd~Gy~~  194 (214)
T d1m6da_         115 QNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYY  194 (214)
T ss_dssp             SCHHHHHHHHHHHCCEEEEECTHHHHHCCSSEECCCGGGSCTTCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEE
T ss_pred             cCHHHHHHHHHhcCCeEEEEEEEehhhccCCccccccCCCCCcccceeEEEEcccccCCceEEEEECCCCCccccCCEEE
Confidence            35678899999999999999997777777776654445566667899999999999999999999999999999999999


Q ss_pred             EEccCCCCccCCC
Q psy282          215 IEHTLRSHLTHDI  227 (233)
Q Consensus       215 i~~~~~~~~~~~~  227 (233)
                      |+|+.+.+.+...
T Consensus       195 i~~g~n~cgI~~~  207 (214)
T d1m6da_         195 LHRGSGACGVNTM  207 (214)
T ss_dssp             EESSSCGGGTTTT
T ss_pred             EEcCCCcccccce
Confidence            9999876644443

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=99.92  E-value=2.1e-25  Score=182.53  Aligned_cols=127  Identities=29%  Similarity=0.478  Sum_probs=102.3

Q ss_pred             CCCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC-CHHHHHHHHHhcCCEEEEEecC--CCCCcCCceeeCCCC
Q psy282            1 MGLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN-GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDE   77 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~-~~~~i~~~l~~~GPv~v~i~~~--~f~~y~~Gi~~~~~~   77 (233)
                      .|+++|+++||......  .|..........+.. +..++ +.++++++|..+|||++++.+.  .|+.|++|||..+  
T Consensus        78 ~g~~~e~~~py~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~y~~Giy~~~--  152 (218)
T d1yala_          78 NGVHTSKVYPYQAKQYK--CRATDKPGPKVKITG-YKRVPSNCETSFLGALANQPLSVLVEAGGKPFQLYKSGVFDGP--  152 (218)
T ss_dssp             HCBCBTTTSCCCSSCCC--CCGGGCCSCCBCCSE-EEECCSSBHHHHHHHHTTSCEEEEECCCSHHHHTCCSSEECCS--
T ss_pred             hcccccccCCcccccCc--cccccccccceeecc-ceEeCCccHHHHHHHHHhCCceEEEEecccchhhcccceeeec--
Confidence            38899999999987662  333334445566677 77777 5566666777789999999984  7899999999876  


Q ss_pred             CCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccc----cccCcccccc
Q psy282           78 TCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN----NACGKDFLHF  134 (233)
Q Consensus        78 ~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~----~~Cgi~~~~~  134 (233)
                       + ...++|||+|||||.+++.+|||||||||+.||++||+|++++.    +.|+|.+.+.
T Consensus       153 -~-~~~~~Hav~IVGyg~~~g~~ywivkNSWG~~WGd~Gy~~I~~~~~~~~~~CGI~~~~~  211 (218)
T d1yala_         153 -C-GTKLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSY  211 (218)
T ss_dssp             -C-CSCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECCCSBSCCGGGTTSSCE
T ss_pred             -c-cccCCcEEEEEEeeccCCceEEEEECCCCCCcccCCEEEEEccCCCCCCcCCccceee
Confidence             2 34579999999999999999999999999999999999999875    5799876543

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.5e-26  Score=191.08  Aligned_cols=88  Identities=27%  Similarity=0.506  Sum_probs=76.8

Q ss_pred             CccceeeeeecccceEEEEec-cccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcEEE
Q psy282          136 GSETMKKILYKYGPLSVGLNS-HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK  214 (233)
Q Consensus       136 ~e~~i~~~l~~~GPv~v~i~~-~~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy~~  214 (233)
                      .++.|+++|.+.|||+++|.+ +.|++|++|++.   ..|....++|||+|||||++++.+|||||||||++|||+||||
T Consensus       157 ~~~~ik~~l~~~gpv~~~~~~~~~f~~y~~gi~~---~~~~~~~~~Hav~IVGyg~~~g~~ywIvkNSWG~~WGd~GYf~  233 (254)
T d1gmya_         157 SEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQ---HVTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFK  233 (254)
T ss_dssp             CHHHHHHHHHHHCCEEEEEEEEGGGTTCCSSEEC---CCSCCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEE
T ss_pred             HHHHHHHHHHHcCCEEEEEEeechhhhccCCccc---cccccccccEEEEEEEEeccCCceEEEEEcCCCCCcCCCceEE
Confidence            457789999999999999999 679999999874   3455556799999999999999999999999999999999999


Q ss_pred             EEccCCCCccCC
Q psy282          215 IEHTLRSHLTHD  226 (233)
Q Consensus       215 i~~~~~~~~~~~  226 (233)
                      |+|+.+.+.++.
T Consensus       234 i~~~~n~cgi~~  245 (254)
T d1gmya_         234 ILRGQDHCGIES  245 (254)
T ss_dssp             EECSSCGGGTTT
T ss_pred             EEcCCCccCcCC
Confidence            999987765533

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.91  E-value=1e-25  Score=183.81  Aligned_cols=86  Identities=29%  Similarity=0.631  Sum_probs=75.3

Q ss_pred             cCccceeeeeecccceEEEEeccccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcEEE
Q psy282          135 NGSETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK  214 (233)
Q Consensus       135 ~~e~~i~~~l~~~GPv~v~i~~~~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy~~  214 (233)
                      .+.+.|++++.++|||++++.+..|++|+++++.    .|.....+|||+|||||++++++|||||||||+.|||+||||
T Consensus       120 ~~~~~ik~~i~~~gpv~~~~~~~~~~~~~~~~~~----~~~~~~~~Hav~IVGyg~~~~~~ywivrNSWG~~WGd~Gy~~  195 (215)
T d1me4a_         120 QDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMT----SCVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIR  195 (215)
T ss_dssp             SCHHHHHHHHHHHCCEEEEECCTTGGGCCSSEEC----SCCCSCCCEEEEEEEEESSSSSCEEEEECSBCTTSTBTTEEE
T ss_pred             ccHHHHHHHHHhcCceeEEEEeeeeccccccccc----CCccccceeEEEEEEccccCCceEEEEEcCCCCCcccCCEEE
Confidence            3567889999999999999999888889988774    344456899999999999999999999999999999999999


Q ss_pred             EEccCCCCcc
Q psy282          215 IEHTLRSHLT  224 (233)
Q Consensus       215 i~~~~~~~~~  224 (233)
                      |+|+.+.+.+
T Consensus       196 i~~g~n~cgI  205 (215)
T d1me4a_         196 IAKGSNQCLV  205 (215)
T ss_dssp             EESSSCGGGT
T ss_pred             EECCCCcccc
Confidence            9999776644

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.1e-26  Score=193.94  Aligned_cols=84  Identities=31%  Similarity=0.595  Sum_probs=73.8

Q ss_pred             CccceeeeeecccceEEEEec-cccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcEEE
Q psy282          136 GSETMKKILYKYGPLSVGLNS-HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK  214 (233)
Q Consensus       136 ~e~~i~~~l~~~GPv~v~i~~-~~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy~~  214 (233)
                      +.+.++++|.++|||+++|++ +.|++|++||+.   ..|+...++|||+|||||++++.+|||||||||++|||+||||
T Consensus       170 ~~e~ik~~l~~~GPv~v~~~~~~~f~~y~~Gi~~---~~~~~~~~~HAV~IVGyg~~~g~~ywivrNSWG~~WGd~Gyf~  246 (275)
T d1deua_         170 GREKMMAEIYANGPISCGIMATERLANYTGGIYA---EYQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLR  246 (275)
T ss_dssp             SHHHHHHHHHHHCCEEEEECCCHHHHTCCSSEEC---BCCSCCCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEE
T ss_pred             cHHHHHHHHHhCCCcEEEEEeccchhccCCCccc---CccccccCCeEEEEEEEeccCCcEEEEEECCCCCCcccCCEEE
Confidence            456788889999999999998 478999999885   2455567899999999999999999999999999999999999


Q ss_pred             EEccCCCC
Q psy282          215 IEHTLRSH  222 (233)
Q Consensus       215 i~~~~~~~  222 (233)
                      |+|+.+++
T Consensus       247 I~~~~~~~  254 (275)
T d1deua_         247 IVTSTYKD  254 (275)
T ss_dssp             EECTTHHH
T ss_pred             EECCCCCC
Confidence            99986544

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=99.91  E-value=1.8e-25  Score=182.82  Aligned_cols=89  Identities=29%  Similarity=0.494  Sum_probs=71.4

Q ss_pred             ccceeeeeecccceEEEEecc--ccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcEEE
Q psy282          137 SETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK  214 (233)
Q Consensus       137 e~~i~~~l~~~GPv~v~i~~~--~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy~~  214 (233)
                      .+.+++++..++||++++.+.  .|+.|++||+.   ..+. ..++|||+|||||++++++|||||||||++|||+||||
T Consensus       117 ~~~~~~~~~~~~pv~~~~~~~~~~~~~y~~Giy~---~~~~-~~~~Hav~IVGyg~~~g~~ywivkNSWG~~WGd~Gy~~  192 (218)
T d1yala_         117 CETSFLGALANQPLSVLVEAGGKPFQLYKSGVFD---GPCG-TKLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMR  192 (218)
T ss_dssp             BHHHHHHHHTTSCEEEEECCCSHHHHTCCSSEEC---CSCC-SCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEE
T ss_pred             cHHHHHHHHHhCCceEEEEecccchhhcccceee---eccc-ccCCcEEEEEEeeccCCceEEEEECCCCCCcccCCEEE
Confidence            344555566889999999983  68889999985   2233 35799999999999999999999999999999999999


Q ss_pred             EEccCCCCccCCCCCCC
Q psy282          215 IEHTLRSHLTHDIPGVP  231 (233)
Q Consensus       215 i~~~~~~~~~~~~~~~~  231 (233)
                      |+|+.++.  .+.|||.
T Consensus       193 I~~~~~~~--~~~CGI~  207 (218)
T d1yala_         193 LKRQSGNS--QGTCGVY  207 (218)
T ss_dssp             EECCCSBS--CCGGGTT
T ss_pred             EEccCCCC--CCcCCcc
Confidence            99987553  3445543

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=99.91  E-value=1.4e-24  Score=177.08  Aligned_cols=124  Identities=28%  Similarity=0.516  Sum_probs=98.9

Q ss_pred             CCCCCCCCCCCCCCCCCccccccCCCc-eeEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEecC--CCCCcCCceeeCC
Q psy282            1 MGLESEKDYPYKNANGEKFKCAYDKSK-VKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKN   75 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~C~~~~~~-~~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~~--~f~~y~~Gi~~~~   75 (233)
                      +|+++|++|||.....   .|+..... ....+.. +..+.  .++.|+++|.+ |||++++.+.  .|+.|++|+|..+
T Consensus        78 ~G~~~e~~yPy~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~-gpv~~~~~~~~~~~~~y~~g~~~~~  152 (216)
T d1ppoa_          78 NGIHLRSKYPYKAKQG---TCRAKQVGGPIVKTSG-VGRVQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFEGP  152 (216)
T ss_dssp             HCBCBTTTSCCCSSCC---CCCGGGCCSCCBCCCE-EEECCSSCHHHHHHHHHH-SCEEEEECCCSHHHHHCCSSEECCS
T ss_pred             cCccccccCCcccccc---ccccccccccceeecc-ceeecccHHHHHHHHHhh-CCCceeeeeccccceecCCcccccc
Confidence            4899999999998877   67644333 2233333 44444  77888888876 9999999984  7889999999775


Q ss_pred             CCCCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccc----cccCccccc
Q psy282           76 DETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN----NACGKDFLH  133 (233)
Q Consensus        76 ~~~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~----~~Cgi~~~~  133 (233)
                         + ...++|||+|||||.+++.+|||+|||||+.||++||+|+.++.    +.|++.+.+
T Consensus       153 ---~-~~~~~Hav~iVGyg~~~~~~ywivrNSWG~~WGd~Gy~~i~~~~~~~~~~Cgi~~~~  210 (216)
T d1ppoa_         153 ---C-GTKVDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSS  210 (216)
T ss_dssp             ---C-CSCCCEEEEEEEEEEETTEEEEEEECSBCSSSTBTTEEEEECCCSSSSCGGGTTSCC
T ss_pred             ---c-cccCCcEEEEEeccccCCCceEEEECCCCCCcccCCEEEEEcCCCCCCCcCccccEe
Confidence               2 34579999999999999999999999999999999999999875    458886643

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.9e-25  Score=182.30  Aligned_cols=95  Identities=28%  Similarity=0.632  Sum_probs=78.2

Q ss_pred             cCccceeeeeecccceEEEEec--cccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcE
Q psy282          135 NGSETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF  212 (233)
Q Consensus       135 ~~e~~i~~~l~~~GPv~v~i~~--~~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy  212 (233)
                      ..+..+++++...+||++++..  ..|+.+++|++.  .+.+ ...++|||+|||||++.+++|||||||||++|||+||
T Consensus       119 ~~~~~~~~~l~~~g~v~~~~~~~~~~f~~~~~gi~~--~~~~-~~~~~Hav~iVGy~~~~~~~ywivrNSWG~~WG~~Gy  195 (217)
T d2h7ja1         119 GREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYY--EPSC-TQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGY  195 (217)
T ss_dssp             TCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSCBC--CTTC-CSCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTE
T ss_pred             cHHHHHHHHhhcCceEEEEEeeehhhhcccCCccee--CCCC-CCCCCeEEEEEecccCCCceEEEEEcCCCCCcccCCE
Confidence            4567789999999999999875  368888999885  2333 3468999999999999999999999999999999999


Q ss_pred             EEEEccC-CCCccCCCCCCCC
Q psy282          213 FKIEHTL-RSHLTHDIPGVPT  232 (233)
Q Consensus       213 ~~i~~~~-~~~~~~~~~~~~~  232 (233)
                      |||+|+. +.|-+..-|.+|+
T Consensus       196 ~~i~~~~~n~cgi~~~~~~p~  216 (217)
T d2h7ja1         196 IRMARNKGNHCGIASFPSYPE  216 (217)
T ss_dssp             EEEECSSSSGGGTTTSCEEEE
T ss_pred             EEEecCCCCcCCcccccccee
Confidence            9999998 5554566666554

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.2e-24  Score=181.55  Aligned_cols=92  Identities=30%  Similarity=0.568  Sum_probs=85.0

Q ss_pred             CHHHHHHHHHhcCCEEEEEec-CCCCCcCCceeeCCCCCCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCccee
Q psy282           41 GSETMKKILYKYGPLSVLLNS-DLIHDYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK  119 (233)
Q Consensus        41 ~~~~i~~~l~~~GPv~v~i~~-~~f~~y~~Gi~~~~~~~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~  119 (233)
                      +++.||++|+.+|||+++|++ +.|+.|++||+..+   |....++|||+|||||++++.+|||||||||+.||++||+|
T Consensus       157 ~~~~ik~~l~~~gpv~~~~~~~~~f~~y~~gi~~~~---~~~~~~~Hav~IVGyg~~~g~~ywIvkNSWG~~WGd~GYf~  233 (254)
T d1gmya_         157 SEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHV---TGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFK  233 (254)
T ss_dssp             CHHHHHHHHHHHCCEEEEEEEEGGGTTCCSSEECCC---SCCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEE
T ss_pred             HHHHHHHHHHHcCCEEEEEEeechhhhccCCccccc---cccccccEEEEEEEEeccCCceEEEEEcCCCCCcCCCceEE
Confidence            899999999999999999999 58999999999876   66677899999999999999999999999999999999999


Q ss_pred             eeccccccCccccccc
Q psy282          120 IERGNNACGKDFLHFN  135 (233)
Q Consensus       120 ~~~~~~~Cgi~~~~~~  135 (233)
                      ++++.+.|+|++.+..
T Consensus       234 i~~~~n~cgi~~~~~~  249 (254)
T d1gmya_         234 ILRGQDHCGIESEVVA  249 (254)
T ss_dssp             EECSSCGGGTTTSCEE
T ss_pred             EEcCCCccCcCCceEe
Confidence            9999899999886543

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.4e-24  Score=174.39  Aligned_cols=126  Identities=33%  Similarity=0.639  Sum_probs=107.1

Q ss_pred             CCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEecC--CCCCcCCceeeCCCC
Q psy282            2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDE   77 (233)
Q Consensus         2 Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~~--~f~~y~~Gi~~~~~~   77 (233)
                      ++++|++|||...+.   .|.........++.. +....  .+++++++|.++|||++++.+.  .|++|++|++..+  
T Consensus        82 ~~~~~~~~p~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~y~~g~~~~~--  155 (221)
T d1fh0a_          82 GLDSEESYPYVAVDE---ICKYRPENSVAQDTG-FTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEP--  155 (221)
T ss_dssp             CEEBTTTSCCCSSCC---CCCCCGGGEEECCSC-EEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECCT--
T ss_pred             ccccccCcCcccccc---cccccccccccccee-eeecCCcHHHHHHHHHHhcCCceEEEEeccccccccCCCccccc--
Confidence            467899999998877   566555556677777 66655  8889999999999999999984  7999999999877  


Q ss_pred             CCCCCCCCcEEEEEeeecc----CCccEEEEecCCCCCCCCCcceeeeccc-cccCccccc
Q psy282           78 TCSPYDLGHAVLLVGYGKQ----DDIPYWLVRNSWGPIGPDEGFFKIERGN-NACGKDFLH  133 (233)
Q Consensus        78 ~c~~~~~~H~v~ivG~g~~----~~~~ywivknswg~~wge~gy~~~~~~~-~~Cgi~~~~  133 (233)
                      .|.....+|+++|||||.+    ++.+|||||||||+.|||+||+|++++. +.|+|.+.+
T Consensus       156 ~~~~~~~~ha~~ivG~g~~~~~~~~~~ywivrNSWG~~WGd~Gy~~i~~~~~n~CgI~~~~  216 (221)
T d1fh0a_         156 DCSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAA  216 (221)
T ss_dssp             TCCSSCCCEEEEEEEEEESSSCTTSSEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSC
T ss_pred             cccccCCcccEEEeeEeccCcCCCCceEEEEEeCCCCCcccCCEEEEEeCCCCccccCCCc
Confidence            4667778999999999964    6788999999999999999999999985 899997754

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.9e-25  Score=180.51  Aligned_cols=94  Identities=28%  Similarity=0.592  Sum_probs=78.6

Q ss_pred             cCccceeeeeecccceEEEEec--cccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcE
Q psy282          135 NGSETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF  212 (233)
Q Consensus       135 ~~e~~i~~~l~~~GPv~v~i~~--~~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy  212 (233)
                      .+.++|++++.+.|||++.+.+  ++|++|++|++.  +..|.....+|||+|||||++.+.+|||||||||++|||+||
T Consensus       116 ~~~~~ik~~~~~~g~v~~~~~~~~~~f~~y~~gi~~--~~~~~~~~~~Hav~iVGy~~~~~~~ywivrNSWG~~WGe~Gy  193 (215)
T d2r6na1         116 GNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYY--DESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGY  193 (215)
T ss_dssp             TCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEEC--CTTCCTTCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTE
T ss_pred             cHHHHHHHhhcccccEEEEEEeeechhcccCCCccc--CCCCCCCCCCeeEEEEEeeccCCCcEEEEEcCCCCCcccCCe
Confidence            4567899999999999998875  469999999875  456777788999999999999899999999999999999999


Q ss_pred             EEEEccCCCC-ccCCCCCC
Q psy282          213 FKIEHTLRSH-LTHDIPGV  230 (233)
Q Consensus       213 ~~i~~~~~~~-~~~~~~~~  230 (233)
                      |||+|+.++. .+...+..
T Consensus       194 ~~i~~~~~n~Cgi~~~~~~  212 (215)
T d2r6na1         194 ILMARNKNNACGIANLASF  212 (215)
T ss_dssp             EEEESSSSSGGGTTSSCEE
T ss_pred             EEEEeCCCCcCcccCcccc
Confidence            9999997544 34444433

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=99.90  E-value=7.1e-25  Score=178.96  Aligned_cols=89  Identities=27%  Similarity=0.530  Sum_probs=72.0

Q ss_pred             CccceeeeeecccceEEEEec--cccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcEE
Q psy282          136 GSETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFF  213 (233)
Q Consensus       136 ~e~~i~~~l~~~GPv~v~i~~--~~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy~  213 (233)
                      .+..+++++ .+|||++++.+  +.|+.|++|++.   ..+. ..++|||+|||||++++++|||||||||++|||+|||
T Consensus       117 ~~~~~~~~l-~~gpv~~~~~~~~~~~~~y~~g~~~---~~~~-~~~~Hav~iVGyg~~~~~~ywivrNSWG~~WGd~Gy~  191 (216)
T d1ppoa_         117 NEGNLLNAI-AKQPVSVVVESKGRPFQLYKGGIFE---GPCG-TKVDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYI  191 (216)
T ss_dssp             CHHHHHHHH-HHSCEEEEECCCSHHHHHCCSSEEC---CSCC-SCCCEEEEEEEEEEETTEEEEEEECSBCSSSTBTTEE
T ss_pred             HHHHHHHHH-hhCCCceeeeeccccceecCCcccc---cccc-ccCCcEEEEEeccccCCCceEEEECCCCCCcccCCEE
Confidence            345566666 67999999997  357889999874   2232 3579999999999999999999999999999999999


Q ss_pred             EEEccCCCCccCCCCCCC
Q psy282          214 KIEHTLRSHLTHDIPGVP  231 (233)
Q Consensus       214 ~i~~~~~~~~~~~~~~~~  231 (233)
                      ||+|+.++.  +++|||.
T Consensus       192 ~i~~~~~~~--~~~Cgi~  207 (216)
T d1ppoa_         192 RIKRAPGNS--PGVCGLY  207 (216)
T ss_dssp             EEECCCSSS--SCGGGTT
T ss_pred             EEEcCCCCC--CCcCccc
Confidence            999998765  3455554

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

Probab=99.90  E-value=6.5e-25  Score=179.31  Aligned_cols=81  Identities=30%  Similarity=0.569  Sum_probs=68.1

Q ss_pred             cCccceeeeeecccceEEEEecc--ccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcE
Q psy282          135 NGSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGF  212 (233)
Q Consensus       135 ~~e~~i~~~l~~~GPv~v~i~~~--~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy  212 (233)
                      .+.+.+++++..+|||+++|.+.  ++.++.+|++.    .+.....+|||+|||||++++++|||||||||++|||+||
T Consensus       118 ~~~~~~~~~~~~~gpv~v~~~~~~~~~~~~~~g~~~----~~~~~~~~Hav~iVGyg~~~~~~ywivrNSWG~~WGd~Gy  193 (218)
T d1aeca_         118 YNNEWALQTAVTYQPVSVALDAAGDAFKQYSSGIFT----GPCGTAIDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGY  193 (218)
T ss_dssp             SSCHHHHHHHHHHSCEEEEECCCSHHHHHCCSSEEC----CSCCSSCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTE
T ss_pred             ccHHHHHHHHhhcCCceeEEEecchhhhcCCCCccc----ccccccCCceeEEEEEeccCCeEEEEEEcCCCCCcccCCE
Confidence            35677889999999999999983  46666777653    2333467999999999999999999999999999999999


Q ss_pred             EEEEccC
Q psy282          213 FKIEHTL  219 (233)
Q Consensus       213 ~~i~~~~  219 (233)
                      |||+|+.
T Consensus       194 ~~i~~~~  200 (218)
T d1aeca_         194 MRILRNV  200 (218)
T ss_dssp             EEEECCC
T ss_pred             EEEEeCC
Confidence            9999975

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

Probab=99.90  E-value=6.8e-25  Score=188.44  Aligned_cols=95  Identities=23%  Similarity=0.409  Sum_probs=74.9

Q ss_pred             cCccceeeeeeccc-ceEEEEec---cccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCC
Q psy282          135 NGSETMKKILYKYG-PLSVGLNS---HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDE  210 (233)
Q Consensus       135 ~~e~~i~~~l~~~G-Pv~v~i~~---~~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~  210 (233)
                      .+++.+++++...+ |+++.+.+   +.|++|++|++.  ...|+....+|||+|||||++++++|||||||||++|||+
T Consensus       199 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~gi~~--~~~~~~~~~~HaV~iVGyg~~~g~~YWivkNSWG~~WGe~  276 (302)
T d1xkga1         199 PNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTII--QRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDN  276 (302)
T ss_dssp             CCHHHHHHHHHHHCCCEEEEEEESCHHHHHTCCSSSCB--CCCCSSCCEEEEEEEEEEEEETTEEEEEEECSBCTTSTBT
T ss_pred             chHHHHHHhhhhcccccceeecccccchhhccccceee--cCCCCCCcCCEEEEEEEEeccCCeEEEEEEcCCCCchhcC
Confidence            35567777776644 44444443   367888998876  4567766678999999999999999999999999999999


Q ss_pred             cEEEEEccCCCCccCCCCCCC
Q psy282          211 GFFKIEHTLRSHLTHDIPGVP  231 (233)
Q Consensus       211 Gy~~i~~~~~~~~~~~~~~~~  231 (233)
                      |||||+|+.+.|.+...|.+|
T Consensus       277 GY~~i~~~~n~cgi~~~~~~~  297 (302)
T d1xkga1         277 GYGYFAANIDLMMIEEYPYVV  297 (302)
T ss_dssp             TEEEEECSSCGGGTTTCCEEE
T ss_pred             CEEEEECCCCeeccCCCcEEE
Confidence            999999999888666666543

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

Probab=99.90  E-value=2.6e-24  Score=175.68  Aligned_cols=124  Identities=30%  Similarity=0.593  Sum_probs=96.9

Q ss_pred             CCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEecC--CCCCcCCceeeCCCC
Q psy282            2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDE   77 (233)
Q Consensus         2 Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~~--~f~~y~~Gi~~~~~~   77 (233)
                      ++.+|.+|||.....   .|........+.... .....  +.+.|+++|..+|||+++|++.  .|+.+++|++..+  
T Consensus        82 ~v~~e~~yp~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gpv~v~~~~~~~~~~~~~~g~~~~~--  155 (218)
T d1aeca_          82 GINTEENYPYTAQDG---ECNVDLQNEKYVTID-TYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTGP--  155 (218)
T ss_dssp             CBCBTTTSCCCSSCC---CCCHHHHHCCCBCCC-EEEECCSSCHHHHHHHHHHSCEEEEECCCSHHHHHCCSSEECCS--
T ss_pred             eecCccccCcccccC---ccceeccccccceec-ccccccccHHHHHHHHhhcCCceeEEEecchhhhcCCCCccccc--
Confidence            478999999998777   554332222222333 22222  7889999999999999999984  5677788888765  


Q ss_pred             CCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeecc---ccccCccccc
Q psy282           78 TCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG---NNACGKDFLH  133 (233)
Q Consensus        78 ~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~---~~~Cgi~~~~  133 (233)
                        .....+|||+|||||.+++.+|||||||||+.||++||+|++++   .+.|+|.+.+
T Consensus       156 --~~~~~~Hav~iVGyg~~~~~~ywivrNSWG~~WGd~Gy~~i~~~~~~~~~Cgi~~~~  212 (218)
T d1aeca_         156 --CGTAIDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIATMP  212 (218)
T ss_dssp             --CCSSCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECCCSTTCGGGTTSSC
T ss_pred             --ccccCCceeEEEEEeccCCeEEEEEEcCCCCCcccCCEEEEEeCCCCCcccccCCcc
Confidence              34567999999999999999999999999999999999999985   4789987654

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

Probab=99.89  E-value=3.6e-24  Score=174.46  Aligned_cols=83  Identities=24%  Similarity=0.522  Sum_probs=70.1

Q ss_pred             CccceeeeeecccceEEEEec--cccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcEE
Q psy282          136 GSETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFF  213 (233)
Q Consensus       136 ~e~~i~~~l~~~GPv~v~i~~--~~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy~  213 (233)
                      +.+.+++.+...+|+.+++.+  .+|..|++|++.    .+....++|||+|||||++++++|||||||||++|||+|||
T Consensus       116 ~~~~~~~~~~~~~pv~~~~~~~~~~~~~y~~gi~~----~~~~~~~~Hav~iVGyg~~~~~~~wiv~NSWG~~WGd~Gy~  191 (216)
T d1cqda_         116 HNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFT----GSCNISANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYI  191 (216)
T ss_dssp             SCHHHHHHHHTTSCEEEEECCCSHHHHTCCSSEEC----CCCCCCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEE
T ss_pred             cchhhHHHHhhcCCcceeeeeecccccccccCccc----ccccccCCcceeeeccccccCCceEEEECCCCCccccCCEE
Confidence            345566666688999999987  368899999985    23445789999999999999999999999999999999999


Q ss_pred             EEEccCCCC
Q psy282          214 KIEHTLRSH  222 (233)
Q Consensus       214 ~i~~~~~~~  222 (233)
                      ||+|+.++.
T Consensus       192 ~i~~~~~~~  200 (216)
T d1cqda_         192 RAERNIENP  200 (216)
T ss_dssp             EEECSCSST
T ss_pred             EEEcCCCCC
Confidence            999998543

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

Probab=99.89  E-value=2.5e-23  Score=169.35  Aligned_cols=125  Identities=25%  Similarity=0.504  Sum_probs=103.1

Q ss_pred             CCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC-CHHHHHHHHHhcCCEEEEEecC--CCCCcCCceeeCCCCC
Q psy282            2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN-GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDET   78 (233)
Q Consensus         2 Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~-~~~~i~~~l~~~GPv~v~i~~~--~f~~y~~Gi~~~~~~~   78 (233)
                      ++..|++|||.+...   .|.........++.. +..+. +.+++++.|...+|+++++.+.  +|+.|++|||...   
T Consensus        80 ~~~~e~~~p~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~y~~gi~~~~---  152 (216)
T d1cqda_          80 GINSEETYPYRGQDG---ICNSTVNAPVVSIDS-YENVPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTGS---  152 (216)
T ss_dssp             SBCBTTTSCCCSSCC---CCCSSSCCCSBCCSE-EEECCSSCHHHHHHHHTTSCEEEEECCCSHHHHTCCSSEECCC---
T ss_pred             CccccccCCcccccc---ccccccCCceeEeee-EEecCCcchhhHHHHhhcCCcceeeeeecccccccccCccccc---
Confidence            356789999998877   666556666677777 77776 5566777777789999999883  8999999999754   


Q ss_pred             CCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccc----cccCcccccc
Q psy282           79 CSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN----NACGKDFLHF  134 (233)
Q Consensus        79 c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~----~~Cgi~~~~~  134 (233)
                       ....++|||+|||||.+++.+|||||||||+.||++||+|+.++.    +.|++.+.+.
T Consensus       153 -~~~~~~Hav~iVGyg~~~~~~~wiv~NSWG~~WGd~Gy~~i~~~~~~~~~~Cgi~~~~~  211 (216)
T d1cqda_         153 -CNISANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFAS  211 (216)
T ss_dssp             -CCCCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCE
T ss_pred             -ccccCCcceeeeccccccCCceEEEECCCCCccccCCEEEEEcCCCCCCCCCCccceee
Confidence             466789999999999999999999999999999999999999874    5799876543

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

Probab=99.88  E-value=5.1e-24  Score=174.48  Aligned_cols=89  Identities=29%  Similarity=0.643  Sum_probs=70.9

Q ss_pred             cCccceeeeeecccceEEEEec--cccccccCcceecCCCCCCCCCCCEEEEEEEeeec-CCcCEEEEEcCCCCCCCCCc
Q psy282          135 NGSETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ-DDIPYWLVRNSWGPIGPDEG  211 (233)
Q Consensus       135 ~~e~~i~~~l~~~GPv~v~i~~--~~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~-~~~~ywivkNSWg~~WG~~G  211 (233)
                      .+.+.++++|. .+|+++++.+  ++|++|..|++.    .|.....+|||+|||||++ ++++|||||||||+.|||+|
T Consensus       119 ~~~~~~k~~l~-~~pv~~~~~~~~~~~~~y~~g~~~----~~~~~~~~Hav~iVGy~~~~~g~~ywiikNSWG~~WG~~G  193 (224)
T d1s4va_         119 NDENALLKAVA-NQPVSVAIDAGGSDFQFYSEGVFT----GSCGTELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKG  193 (224)
T ss_dssp             TCHHHHHHHHH-HSCEEEEECCCSHHHHTCCSSEEC----CCCCCCCCEEEEEEEEEECTTSCEEEEEECSBCTTSTBTT
T ss_pred             ccHHHHHHHHh-cCCceEEEEecchhhhhccCCCcc----CcccccCCcceEEEecccccCCceEEEEEcCCCCccccCc
Confidence            34566777775 5788888887  468999999885    2334467999999999986 67999999999999999999


Q ss_pred             EEEEEccCCCCccCCCCCC
Q psy282          212 FFKIEHTLRSHLTHDIPGV  230 (233)
Q Consensus       212 y~~i~~~~~~~~~~~~~~~  230 (233)
                      ||||+|+..+.  .++|||
T Consensus       194 y~~i~~g~~~~--~n~CgI  210 (224)
T d1s4va_         194 YIRMERGISDK--EGLCGI  210 (224)
T ss_dssp             EEEEECSCSST--TCGGGT
T ss_pred             eEEEECCCCCC--CCcCCc
Confidence            99999987553  344544

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

Probab=99.88  E-value=9.2e-24  Score=172.13  Aligned_cols=82  Identities=29%  Similarity=0.577  Sum_probs=66.7

Q ss_pred             ccceeeeeecccceEEEEecc--ccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcEEE
Q psy282          137 SETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK  214 (233)
Q Consensus       137 e~~i~~~l~~~GPv~v~i~~~--~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy~~  214 (233)
                      .+.+++++...+||.+++.+.  ++.++++|++.   ..++ ...+|||+|||||++++++|||||||||++|||+||||
T Consensus       116 ~~~~~~~~~~~~pv~~~~~~~~~~~~~~~~g~~~---~~~~-~~~~Hav~iVGyg~~~~~~ywiirNSWG~~WGd~Gy~~  191 (215)
T d1iwda_         116 NESALQSAVASQPVSVTVEAAGAPFQHYSSGIFT---GPCG-TAQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIW  191 (215)
T ss_dssp             CHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEEC---CCCC-CCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEE
T ss_pred             HHHHHHHHHhcCCccceeeecchhhhccccCccc---cccc-ccccceEEEEEeecCCCceEEEEECCCCcccccCCEEE
Confidence            345555666789999999873  56677778764   2233 35799999999999999999999999999999999999


Q ss_pred             EEccCCCC
Q psy282          215 IEHTLRSH  222 (233)
Q Consensus       215 i~~~~~~~  222 (233)
                      |+|+.++.
T Consensus       192 I~~~~~~~  199 (215)
T d1iwda_         192 MERNVASS  199 (215)
T ss_dssp             EECSCSST
T ss_pred             EECCCCCC
Confidence            99998664

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.1e-23  Score=172.07  Aligned_cols=95  Identities=34%  Similarity=0.672  Sum_probs=76.5

Q ss_pred             CccceeeeeecccceEEEEecc--ccccccCcceecCCCCCCCCCCCEEEEEEEeeec----CCcCEEEEEcCCCCCCCC
Q psy282          136 GSETMKKILYKYGPLSVGLNSH--LIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQ----DDIPYWLVRNSWGPIGPD  209 (233)
Q Consensus       136 ~e~~i~~~l~~~GPv~v~i~~~--~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~----~~~~ywivkNSWg~~WG~  209 (233)
                      .+..+++++.+++||++++.+.  .|++|++|++.  ...|.....+|+|+|||||.+    ++.+|||||||||++|||
T Consensus       119 ~~~~~~~~~~~~~pv~~~~~~~~~~~~~y~~g~~~--~~~~~~~~~~ha~~ivG~g~~~~~~~~~~ywivrNSWG~~WGd  196 (221)
T d1fh0a_         119 KEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYF--EPDCSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGS  196 (221)
T ss_dssp             CHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEEC--CTTCCSSCCCEEEEEEEEEESSSCTTSSEEEEEECSBCTTSTB
T ss_pred             HHHHHHHHHHhcCCceEEEEeccccccccCCCccc--cccccccCCcccEEEeeEeccCcCCCCceEEEEEeCCCCCccc
Confidence            4557888888999999999883  68999999976  345666678999999999963    578899999999999999


Q ss_pred             CcEEEEEccCCCCc-cCCCCCCCC
Q psy282          210 EGFFKIEHTLRSHL-THDIPGVPT  232 (233)
Q Consensus       210 ~Gy~~i~~~~~~~~-~~~~~~~~~  232 (233)
                      +|||||+|+.++.| +..-+..|+
T Consensus       197 ~Gy~~i~~~~~n~CgI~~~~~yp~  220 (221)
T d1fh0a_         197 NGYVKIAKDKNNHCGIATAASYPN  220 (221)
T ss_dssp             TTEEEEECSSSSGGGTTTSCEEEC
T ss_pred             CCEEEEEeCCCCccccCCCccccc
Confidence            99999999975443 444444443

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=99.87  E-value=2e-23  Score=169.31  Aligned_cols=86  Identities=29%  Similarity=0.485  Sum_probs=68.0

Q ss_pred             ccceeeeeecccceEEEEec--cccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcEEE
Q psy282          137 SETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFK  214 (233)
Q Consensus       137 e~~i~~~l~~~GPv~v~i~~--~~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy~~  214 (233)
                      ...+++++...+|+.+++.+  +.|.++++|++..   .+ ...++|||+|||||++    |||||||||++|||+||||
T Consensus       117 ~~~~~~~~~~~~pv~~~~~~~~~~f~~~~~g~~~~---~~-~~~~~Hav~iVGyg~~----ywivrNSWG~~WGd~Gy~~  188 (212)
T d1khqa_         117 NEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVG---PC-GNKVDHAVAAVGYGPN----YILIKNSWGTGWGENGYIR  188 (212)
T ss_dssp             CHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEECC---SC-CSCCCEEEEEEEEETT----EEEEECSBCTTSTBTTEEE
T ss_pred             cHHHHHHHHhcCCcEEEEEeecchhcccccCcccc---cc-ccccCeEEEecccCCc----EEEEEcCCCCCcccCCEEE
Confidence            34455556678999999987  4788999998752   22 2358999999999854    9999999999999999999


Q ss_pred             EEccCCCCccCCCCCCCC
Q psy282          215 IEHTLRSHLTHDIPGVPT  232 (233)
Q Consensus       215 i~~~~~~~~~~~~~~~~~  232 (233)
                      |+|+.++.  .++|||.+
T Consensus       189 i~~~~~~~--~~~Cgi~~  204 (212)
T d1khqa_         189 IKRGTGNS--YGVCGLYT  204 (212)
T ss_dssp             EECCSCCT--TCGGGTTS
T ss_pred             EEcCCCCC--CCcCCccc
Confidence            99998764  46677654

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

Probab=99.87  E-value=1.8e-22  Score=165.16  Aligned_cols=124  Identities=27%  Similarity=0.549  Sum_probs=97.0

Q ss_pred             CCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEecC--CCCCcCCceeeCCCC
Q psy282            2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDE   77 (233)
Q Consensus         2 Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~~--~f~~y~~Gi~~~~~~   77 (233)
                      |++.|.++||....+.  .|.........++.. +..+.  +++.||++|++ +||++++.+.  +|+.|.+|+|...  
T Consensus        82 ~~~~e~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~~l~~-~pv~~~~~~~~~~~~~y~~g~~~~~--  155 (224)
T d1s4va_          82 GITTEANYPYEAYDGT--CDVSKENAPAVSIDG-HENVPENDENALLKAVAN-QPVSVAIDAGGSDFQFYSEGVFTGS--  155 (224)
T ss_dssp             CBCBTTTSCCCSSCCC--CCHHHHTCCCBCCCE-EEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECCC--
T ss_pred             ceeecccccccCcCCc--cccccccccceeecc-cccccCccHHHHHHHHhc-CCceEEEEecchhhhhccCCCccCc--
Confidence            5788888999877662  222222333445555 55554  88999999987 7988888873  8999999999753  


Q ss_pred             CCCCCCCCcEEEEEeeecc-CCccEEEEecCCCCCCCCCcceeeecc----ccccCccccc
Q psy282           78 TCSPYDLGHAVLLVGYGKQ-DDIPYWLVRNSWGPIGPDEGFFKIERG----NNACGKDFLH  133 (233)
Q Consensus        78 ~c~~~~~~H~v~ivG~g~~-~~~~ywivknswg~~wge~gy~~~~~~----~~~Cgi~~~~  133 (233)
                        .....+|||+|||||.+ ++.+|||||||||+.||++||+|++++    .+.|+|...+
T Consensus       156 --~~~~~~Hav~iVGy~~~~~g~~ywiikNSWG~~WG~~Gy~~i~~g~~~~~n~CgI~~~~  214 (224)
T d1s4va_         156 --CGTELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEA  214 (224)
T ss_dssp             --CCCCCCEEEEEEEEEECTTSCEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSC
T ss_pred             --ccccCCcceEEEecccccCCceEEEEEcCCCCccccCceEEEECCCCCCCCcCCcccee
Confidence              45667999999999976 689999999999999999999999987    3689987654

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=99.86  E-value=3.1e-22  Score=162.13  Aligned_cols=121  Identities=27%  Similarity=0.445  Sum_probs=91.8

Q ss_pred             CCCCCCCCCCCCCCCCCccccccC-CCceeEEeCCceEEeC-CHHHHHHHHHhcCCEEEEEecC--CCCCcCCceeeCCC
Q psy282            1 MGLESEKDYPYKNANGEKFKCAYD-KSKVKLFTGKDFLHFN-GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKND   76 (233)
Q Consensus         1 ~Gi~~e~~yPY~~~~~~~~~C~~~-~~~~~~~i~~~~~~v~-~~~~i~~~l~~~GPv~v~i~~~--~f~~y~~Gi~~~~~   76 (233)
                      +|+++|+++||.+...   .|... .......+.. +.... ++..+++++..++|+++++.+.  .|+.|++|+|..+ 
T Consensus        78 ~g~~~~~~~p~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~f~~~~~g~~~~~-  152 (212)
T d1khqa_          78 YGIHYRNTYPYEGVQR---YCRSREKGPYAAKTDG-VRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGP-  152 (212)
T ss_dssp             TCBCBTTTSCCCSSCC---CCCTTTTCSCSBCCCE-EEECCTTCHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEECCS-
T ss_pred             ccccccccCCcccccC---cccccccccceeeeee-eeeeccccHHHHHHHHhcCCcEEEEEeecchhcccccCccccc-
Confidence            4789999999998766   44322 3333344445 55555 4445555556669999999873  8999999999876 


Q ss_pred             CCCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccc----cccCccccc
Q psy282           77 ETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN----NACGKDFLH  133 (233)
Q Consensus        77 ~~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~----~~Cgi~~~~  133 (233)
                         ....++|||+|||||.    +|||||||||+.||++||+|++++.    +.|+|.+.+
T Consensus       153 ---~~~~~~Hav~iVGyg~----~ywivrNSWG~~WGd~Gy~~i~~~~~~~~~~Cgi~~~~  206 (212)
T d1khqa_         153 ---CGNKVDHAVAAVGYGP----NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSS  206 (212)
T ss_dssp             ---CCSCCCEEEEEEEEET----TEEEEECSBCTTSTBTTEEEEECCSCCTTCGGGTTSCC
T ss_pred             ---cccccCeEEEecccCC----cEEEEEcCCCCCcccCCEEEEEcCCCCCCCcCCcccEe
Confidence               2346899999999984    4999999999999999999999975    569987654

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

Probab=99.86  E-value=6.4e-22  Score=161.05  Aligned_cols=123  Identities=28%  Similarity=0.562  Sum_probs=96.2

Q ss_pred             CCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC-CHHHHHHHHHhcCCEEEEEecC--CCCCcCCceeeCCCCC
Q psy282            2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN-GSETMKKILYKYGPLSVLLNSD--LIHDYNGTPIRKNDET   78 (233)
Q Consensus         2 Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~-~~~~i~~~l~~~GPv~v~i~~~--~f~~y~~Gi~~~~~~~   78 (233)
                      ++..+.++||.....   .|.. ......++.+ |..+. +.++++++|...+||.+++.+.  .|..+++|+|..+   
T Consensus        80 ~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~~~~g~~~~~---  151 (215)
T d1iwda_          80 GIDTQQNYPYSAVQG---SCKP-YRLRVVSING-FQRVTRNNESALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGP---  151 (215)
T ss_dssp             CBCBTTTSCCCSSCC---CCCT-TCCCCBCCCE-EEECCTTCHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEECCC---
T ss_pred             eeccccCCCcccccc---cccc-cccceeEecc-ccccCccHHHHHHHHHhcCCccceeeecchhhhccccCccccc---
Confidence            356678888987777   5553 3334567777 77776 4455555566669999999884  7788899999876   


Q ss_pred             CCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeeccc----cccCccccc
Q psy282           79 CSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERGN----NACGKDFLH  133 (233)
Q Consensus        79 c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~~----~~Cgi~~~~  133 (233)
                      + ....+|||+|||||.+++.+|||||||||+.||++||+|+.++.    +.|++...+
T Consensus       152 ~-~~~~~Hav~iVGyg~~~~~~ywiirNSWG~~WGd~Gy~~I~~~~~~~~~~CGi~~~~  209 (215)
T d1iwda_         152 C-GTAQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLP  209 (215)
T ss_dssp             C-CCCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSC
T ss_pred             c-cccccceEEEEEeecCCCceEEEEECCCCcccccCCEEEEECCCCCCCCcCCccccc
Confidence            2 34579999999999999999999999999999999999999884    568887654

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

Probab=99.85  E-value=9e-23  Score=165.26  Aligned_cols=87  Identities=26%  Similarity=0.432  Sum_probs=64.6

Q ss_pred             cceeeeeecccceEEEEec--cccccccCcceecCCCCCCCCCCCEEEEEEEeeecCCcCEEEEEcCCCCCCCCCcEEEE
Q psy282          138 ETMKKILYKYGPLSVGLNS--HLIHFYNGTPIRKNDETCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKI  215 (233)
Q Consensus       138 ~~i~~~l~~~GPv~v~i~~--~~~~~y~~gi~~~~~~~~~~~~~~Hav~iVGy~~~~~~~ywivkNSWg~~WG~~Gy~~i  215 (233)
                      +.+++.+...+|+++++..  ..|..+++|++.    .+.....+|||+|||||++    |||||||||++|||+|||||
T Consensus       116 ~~~~~~~~~~~pv~~~~~~~~~~f~~~~~gi~~----~~~~~~~~Hav~iVGy~~~----ywiirNSWG~~WGd~Gy~~I  187 (208)
T d1o0ea_         116 EXALKQAVAVQPSTVAIDASSAQFQQYSSGIFS----GPCGTKLNHGVTIVGYQAN----YWIVRNSWGRYWGEKGYIRM  187 (208)
T ss_dssp             HHHHHHHHHHSCEEEEECCCSHHHHTCCSSEEC----CCCCSCCCEEEEEEEECSS----EEEEECSBCTTSTBTTEEEE
T ss_pred             hhHHHHHhhcCCceEEEEecchhhcccccCccc----ccccccCCcEEEEEeeecc----eEEEECCCCCCcccCCeEEE
Confidence            3344455577899999876  478889999885    2223357999999999754    99999999999999999999


Q ss_pred             EccCC--CCccCCCCCCCC
Q psy282          216 EHTLR--SHLTHDIPGVPT  232 (233)
Q Consensus       216 ~~~~~--~~~~~~~~~~~~  232 (233)
                      +|+..  .|.+..-+..||
T Consensus       188 ~~~~~~~~Cgi~~~~~~p~  206 (208)
T d1o0ea_         188 LRVGGCGLCGIARLPYYPT  206 (208)
T ss_dssp             ECCSTTCGGGTTSSCEEEE
T ss_pred             EccCCCCccCccccceecc
Confidence            99653  333344444443

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

Probab=99.85  E-value=1.1e-21  Score=158.87  Aligned_cols=118  Identities=25%  Similarity=0.564  Sum_probs=91.8

Q ss_pred             CCCCCCCCCCCCCCCCccccccCCCceeEEeCCceEEeC--CHHHHHHHHHhcCCEEEEEec-C-CCCCcCCceeeCCCC
Q psy282            2 GLESEKDYPYKNANGEKFKCAYDKSKVKLFTGKDFLHFN--GSETMKKILYKYGPLSVLLNS-D-LIHDYNGTPIRKNDE   77 (233)
Q Consensus         2 Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~v~--~~~~i~~~l~~~GPv~v~i~~-~-~f~~y~~Gi~~~~~~   77 (233)
                      ++.++.++||.....   .|+...  ....+.. |..+.  ++..+++++. .+||++++.. . .|..|++|||..+  
T Consensus        80 ~~~~~~~~p~~~~~~---~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~-~~pv~~~~~~~~~~f~~~~~gi~~~~--  150 (208)
T d1o0ea_          80 GIDTQANYPYKAVQG---PCQAAS--KVVSIDG-YNGVPFCNEXALKQAVA-VQPSTVAIDASSAQFQQYSSGIFSGP--  150 (208)
T ss_dssp             CBCBTTTSCCCSSCC---CCCCCC--CCBCCCE-EEECCTTCHHHHHHHHH-HSCEEEEECCCSHHHHTCCSSEECCC--
T ss_pred             ccccccCCCCcccCC---CccCcc--ccccccc-ccccccchhhHHHHHhh-cCCceEEEEecchhhcccccCccccc--
Confidence            467889999998888   776443  3345666 77766  5555555554 5898888876 3 8999999999765  


Q ss_pred             CCCCCCCCcEEEEEeeeccCCccEEEEecCCCCCCCCCcceeeecc--ccccCcccccc
Q psy282           78 TCSPYDLGHAVLLVGYGKQDDIPYWLVRNSWGPIGPDEGFFKIERG--NNACGKDFLHF  134 (233)
Q Consensus        78 ~c~~~~~~H~v~ivG~g~~~~~~ywivknswg~~wge~gy~~~~~~--~~~Cgi~~~~~  134 (233)
                        .....+|||+||||+.    +|||||||||+.||++||+|+++.  .+.|++.+.+.
T Consensus       151 --~~~~~~Hav~iVGy~~----~ywiirNSWG~~WGd~Gy~~I~~~~~~~~Cgi~~~~~  203 (208)
T d1o0ea_         151 --CGTKLNHGVTIVGYQA----NYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPY  203 (208)
T ss_dssp             --CCSCCCEEEEEEEECS----SEEEEECSBCTTSTBTTEEEEECCSTTCGGGTTSSCE
T ss_pred             --ccccCCcEEEEEeeec----ceEEEECCCCCCcccCCeEEEEccCCCCccCccccce
Confidence              2345799999999964    599999999999999999999985  36899987643

>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]

Probab=99.03  E-value=1.5e-10  Score=102.82  Aligned_cols=81  Identities=16%  Similarity=0.180  Sum_probs=59.6

Q ss_pred             cceeeeeecccceEEEEeccccccccCcceecCCCC---C--------------CCCCCCEEEEEEEeee-cCCc--CEE
Q psy282          138 ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRKNDET---C--------------SPYDLGHAVLLVGYGK-QDDI--PYW  197 (233)
Q Consensus       138 ~~i~~~l~~~GPv~v~i~~~~~~~y~~gi~~~~~~~---~--------------~~~~~~Hav~iVGy~~-~~~~--~yw  197 (233)
                      ..+.++|....||-.+-++..+...+.|+....-..   .              ..+..+|||+|||++. +++.  .+|
T Consensus       314 ~~~~~sL~~g~pVwfgcDV~k~f~~k~Gi~d~~~~~~~~~~~~~~~~K~~Rl~~~es~~tHAM~ltGv~~D~~g~~~~~w  393 (458)
T d3gcba_         314 KLVVKRLQNNKAVFFGSHTPKFMDKKTGVMDIELWNYPAIGYNLPQQKASRIRYHESLMTHAMLITGCHVDETSKLPLRY  393 (458)
T ss_dssp             HHHHHHHHTTCCEEEEECTTTTEETTTTEECTTSBCGGGGTCCCCCCHHHHHHTTSCCCCEEEEEEEEEECTTTCSEEEE
T ss_pred             HHHHHHHhcCCcEEEEecccccccccccccccccccccccCCCcccCHHHHHHhCCCCCCeeEEEEEEEEcCCCCccceE
Confidence            345666777889999999976666667765321000   0              1235799999999985 3443  599


Q ss_pred             EEEcCCCCCCCCCcEEEEEcc
Q psy282          198 LVRNSWGPIGPDEGFFKIEHT  218 (233)
Q Consensus       198 ivkNSWg~~WG~~Gy~~i~~~  218 (233)
                      +|+||||+.+|++|||.|+.+
T Consensus       394 ~VeNSWG~~~g~~Gy~~msd~  414 (458)
T d3gcba_         394 RVENSWGKDSGKDGLYVMTQK  414 (458)
T ss_dssp             EEECSBCTTSTBTTEEEEEHH
T ss_pred             EEEeccCCCCCCCceEEecHH
Confidence            999999999999999999863

>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=9.4e-09  Score=90.67  Aligned_cols=81  Identities=15%  Similarity=0.157  Sum_probs=58.0

Q ss_pred             cceeeeeecccceEEEEeccccccccCcceec----------CCC-CC--------CCCCCCEEEEEEEeee---cCCc-
Q psy282          138 ETMKKILYKYGPLSVGLNSHLIHFYNGTPIRK----------NDE-TC--------SPYDLGHAVLLVGYGK---QDDI-  194 (233)
Q Consensus       138 ~~i~~~l~~~GPv~v~i~~~~~~~y~~gi~~~----------~~~-~~--------~~~~~~Hav~iVGy~~---~~~~-  194 (233)
                      ..+.++|..+-||-.+-++..+...+.|+...          .+. ..        ..+..+|||+|+|++.   ++|. 
T Consensus       309 ~~~~~sL~~g~~VwfgcDV~k~~~~k~Gv~d~~~~d~~~~fg~~~~~m~K~~Rl~y~es~~tHAM~ltGv~l~dd~~G~~  388 (453)
T d2cb5a_         309 KMVAASIKDGEAVWFGCDVGKHFNSKLGLSDMNLYDHELVFGVSLKNMNKAERLTFGESLMTHAMTFTAVSEKDDQDGAF  388 (453)
T ss_dssp             HHHHHHHHTTCCEEEEECTTTTEETTTTEECTTSBCHHHHHSCCSCSSCHHHHHHTTSCCCCEEEEEEEEEECTTSCSCE
T ss_pred             HHHHHHHhcCCcEEEEcccchhcchhccccccccccccccccCCcccCCHHHHHHhcCcCCCceEEEEEEecccccCCCE
Confidence            35666777788999999986544455554310          011 11        1245799999999985   4555 


Q ss_pred             CEEEEEcCCCCCCCCCcEEEEEcc
Q psy282          195 PYWLVRNSWGPIGPDEGFFKIEHT  218 (233)
Q Consensus       195 ~ywivkNSWg~~WG~~Gy~~i~~~  218 (233)
                      .+|+|+||||+.-|++|||.|+..
T Consensus       389 ~~w~VENSWG~~~g~kGy~~Msd~  412 (453)
T d2cb5a_         389 TKWRVENSWGEDHGHKGYLCMTDE  412 (453)
T ss_dssp             EEEEEECSBCTTSTBTTEEEEEHH
T ss_pred             eEEEEEccccCcCCCCceEEecHH
Confidence            699999999999999999999863

>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]

Probab=98.34  E-value=9.4e-07  Score=77.90  Aligned_cols=87  Identities=17%  Similarity=0.235  Sum_probs=63.3

Q ss_pred             eEEeC-C--HHHHHHHHHhcCCEEEEEecCCCCCcCCceeeCCCCC-----------------CCCCCCCcEEEEEeeec
Q psy282           36 FLHFN-G--SETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKNDET-----------------CSPYDLGHAVLLVGYGK   95 (233)
Q Consensus        36 ~~~v~-~--~~~i~~~l~~~GPv~v~i~~~~f~~y~~Gi~~~~~~~-----------------c~~~~~~H~v~ivG~g~   95 (233)
                      |..++ +  .+.++++|...-||..+-++..+...+.||.....-+                 -.....+||++|+|+..
T Consensus       304 y~Nvp~d~lk~~~~~sL~~g~pVwfgcDV~k~f~~k~Gi~d~~~~~~~~~~~~~~~~K~~Rl~~~es~~tHAM~ltGv~~  383 (458)
T d3gcba_         304 YLNVDNETLSKLVVKRLQNNKAVFFGSHTPKFMDKKTGVMDIELWNYPAIGYNLPQQKASRIRYHESLMTHAMLITGCHV  383 (458)
T ss_dssp             EEECCHHHHHHHHHHHHHTTCCEEEEECTTTTEETTTTEECTTSBCGGGGTCCCCCCHHHHHHTTSCCCCEEEEEEEEEE
T ss_pred             EeecCHHHHHHHHHHHHhcCCcEEEEecccccccccccccccccccccccCCCcccCHHHHHHhCCCCCCeeEEEEEEEE
Confidence            55665 2  3455666777789999999987777788887542100                 11246799999999986


Q ss_pred             c-CC-c-cEEEEecCCCCCCCCCcceeeec
Q psy282           96 Q-DD-I-PYWLVRNSWGPIGPDEGFFKIER  122 (233)
Q Consensus        96 ~-~~-~-~ywivknswg~~wge~gy~~~~~  122 (233)
                      + ++ . .+|.|+||||..+|++||+.+..
T Consensus       384 D~~g~~~~~w~VeNSWG~~~g~~Gy~~msd  413 (458)
T d3gcba_         384 DETSKLPLRYRVENSWGKDSGKDGLYVMTQ  413 (458)
T ss_dssp             CTTTCSEEEEEEECSBCTTSTBTTEEEEEH
T ss_pred             cCCCCccceEEEEeccCCCCCCCceEEecH
Confidence            4 33 2 48999999999999999987653

>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=4.8e-05  Score=66.54  Aligned_cols=87  Identities=15%  Similarity=0.138  Sum_probs=62.1

Q ss_pred             eEEeC---CHHHHHHHHHhcCCEEEEEecCCCCCcCCceeeCCC--------------C-----CCCCCCCCcEEEEEee
Q psy282           36 FLHFN---GSETMKKILYKYGPLSVLLNSDLIHDYNGTPIRKND--------------E-----TCSPYDLGHAVLLVGY   93 (233)
Q Consensus        36 ~~~v~---~~~~i~~~l~~~GPv~v~i~~~~f~~y~~Gi~~~~~--------------~-----~c~~~~~~H~v~ivG~   93 (233)
                      |..++   =.+.+.++|...-||..+-|+..+...+.||.....              +     .-.....+||++|+|+
T Consensus       299 y~Nvp~d~l~~~~~~sL~~g~~VwfgcDV~k~~~~k~Gv~d~~~~d~~~~fg~~~~~m~K~~Rl~y~es~~tHAM~ltGv  378 (453)
T d2cb5a_         299 YNNQPIDFLKKMVAASIKDGEAVWFGCDVGKHFNSKLGLSDMNLYDHELVFGVSLKNMNKAERLTFGESLMTHAMTFTAV  378 (453)
T ss_dssp             EEECCHHHHHHHHHHHHHTTCCEEEEECTTTTEETTTTEECTTSBCHHHHHSCCSCSSCHHHHHHTTSCCCCEEEEEEEE
T ss_pred             EEecCHHHHHHHHHHHHhcCCcEEEEcccchhcchhccccccccccccccccCCcccCCHHHHHHhcCcCCCceEEEEEE
Confidence            66676   234556777777799999999755556667642210              0     1112466999999999


Q ss_pred             ec---cCCc-cEEEEecCCCCCCCCCcceeeec
Q psy282           94 GK---QDDI-PYWLVRNSWGPIGPDEGFFKIER  122 (233)
Q Consensus        94 g~---~~~~-~ywivknswg~~wge~gy~~~~~  122 (233)
                      +.   +++. .+|.|+||||..-|++||+++..
T Consensus       379 ~l~dd~~G~~~~w~VENSWG~~~g~kGy~~Msd  411 (453)
T d2cb5a_         379 SEKDDQDGAFTKWRVENSWGEDHGHKGYLCMTD  411 (453)
T ss_dssp             EECTTSCSCEEEEEEECSBCTTSTBTTEEEEEH
T ss_pred             ecccccCCCEeEEEEEccccCcCCCCceEEecH
Confidence            85   4566 58999999999999999987653