Psyllid ID: psy2857

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330--
Protein Sequence
MKFVVLVRILLGVRAIVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQEKAGEKK
Secondary Structure (PSIPRED)
cEEEEccccccccccccccccccccccccccEEEcccccEEEEccccccccccccccccccccccccccccccEEEcccccEEEEcccccccccccccccccccccccccccccccccccEEccEEEccccccccccccccccccccccccccccEEEcccccEEEEcccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccEEEcccccEEEEccccccccccccccccccccccccccccccEEEcccccEEEEcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEccccccccccccccccccccccccccEEEcccccEEEEccccccccccccccccccccccccccccccEEEcccccEEEEccccccccccccccccccccccccccccEEEccccccEEEEcccccccccccccccccccccccccccccEEEcccccEEEEccccccccccccccccccccccccccccccccEccccccccccccccccccccccccEEEEccccccccccccccccccccccccccEEEcccccEEEEccccccccccccccccccccccccccccccEEEcccccEEEEcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MKFVVLVRILLGVRAIVDinecqsnpcgvnatcidtqgsyscvckehytgdpyqacsdideckaldkpcglraicentvpgfnclcpkgysgkpdakvaceqvdvtsecssnfecvnnaecvdglcycrpgfdargsvcvdvdecqlgdpcgpqaqctntpgsfrcdcvegyvgapprikckdvrWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLnrvdinecqsnpcgvnatcidtqgsyscvckehytgdpyqacsdideckaldkpcglraicentvpgfnclcpkgysgkpdakVACEQEKAGEKK
Flexible Loop (DISEMBL)
MKFVVLVRILLGVRAIVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVgapprikckdVRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQEKAGEKK
Low Complexity Region (SEG)
MKFVVLVRILLGVRAIVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQEKAGEKK
Disordered region (IsUnstruct)
**FVVLVRILLGVRAIVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGY*******************
Disordered Region (DISOPRED)
MKFVVLVRILLGVRAIVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVAC**EK*****
Disordered Region (DISEMBL)
MKFVVLVRILLGVRAIVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSG*****************
Disordered Region (DISPRO)
MKFVVLVRILLGVRAIVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQ*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKFVVLVRILLGVRAIVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQEKAGEKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	332	2.2.26 [Sep-21-2011]
Q61555	2907	Fibrillin-2 OS=Mus muscul	yes	N/A	0.906	0.103	0.317	3e-28
P98133	2871	Fibrillin-1 OS=Bos taurus	yes	N/A	0.912	0.105	0.319	3e-28
Q9TV36	2871	Fibrillin-1 OS=Sus scrofa	no	N/A	0.912	0.105	0.319	3e-28
P35555	2871	Fibrillin-1 OS=Homo sapie	yes	N/A	0.912	0.105	0.313	9e-28
P35556	2912	Fibrillin-2 OS=Homo sapie	no	N/A	0.906	0.103	0.317	2e-27
Q75N90	2809	Fibrillin-3 OS=Homo sapie	no	N/A	0.798	0.094	0.339	4e-27
Q61554	2871	Fibrillin-1 OS=Mus muscul	no	N/A	0.912	0.105	0.304	7e-27
Q9NS15	1303	Latent-transforming growt	no	N/A	0.876	0.223	0.308	7e-27
Q07008	2531	Neurogenic locus notch ho	no	N/A	0.834	0.109	0.337	2e-24
Q01705	2531	Neurogenic locus notch ho	no	N/A	0.840	0.110	0.327	3e-24

>sp|Q61555|FBN2_MOUSE Fibrillin-2 OS=Mus musculus GN=Fbn2 PE=1 SV=2

 Score =  126 bits (316), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 105/331 (31%), Positives = 147/331 (44%), Gaps = 30/331 (9%)

Query: 12   GVRAIVDINECQ-SNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCG 70
            GVR  VD +EC   NPCG N TC +  GS+ C C E +   P   C DI+EC      C 
Sbjct: 2201 GVRC-VDTDECSIGNPCG-NGTCTNVIGSFECTCNEGFEPGPMMNCEDINECAQNPLLCA 2258

Query: 71   LRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSEC-----SSNFECVNNAECVDGL 125
             R  C NT   + C CP GY+ + D K+ C+ +D  +E      S    C N       +
Sbjct: 2259 FR--CMNTFGSYECTCPVGYALREDQKM-CKDLDECAEGLHDCESRGMMCKNLIGTF--M 2313

Query: 126  CYCRPGFDAR--GSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKD 183
            C C PG   R  G  CVD +EC+         +C N  GS+RC+C EG+  +    +C D
Sbjct: 2314 CICPPGMARRPDGEGCVDENECRTKPGICENGRCVNIIGSYRCECNEGFQSSSSGTECLD 2373

Query: 184  VRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKR-------- 235
             R       +      + S + ++        +  R +    +L  +    +        
Sbjct: 2374 NRQGLCFAEVLQTMCQMASSSRNLVTKSECCCDGGRGWGHQCELCPLPGTAQYKKICPHG 2433

Query: 236  ---NLNRVDINECQSNPCG-VNATCIDTQGSYSCVCKEHYTGD-PYQACSDIDECKALDK 290
                 +  DI+EC+  P    N  C++T GS+ C CK  YT D    AC D+DEC    K
Sbjct: 2434 PGYATDGRDIDECKVMPSLCTNGQCVNTMGSFRCFCKVGYTTDISGTACVDLDECSQSPK 2493

Query: 291  PCGLRAICENTVPGFNCLCPKGYSGKPDAKV 321
            PC    IC+NT   + C CP+GY  + D K 
Sbjct: 2494 PCNF--ICKNTKGSYQCSCPRGYVLQEDGKT 2522

Fibrillins are structural components of 10-12 nm extracellular calcium-binding microfibrils, which occur either in association with elastin or in elastin-free bundles. Fibrillin-2-containing microfibrils regulate the early process of elastic fiber assembly. Regulates osteoblast maturation by controlling TGF-beta bioavailability and calibrating TGF-beta and BMP levels, respectively.
Mus musculus (taxid: 10090)

>sp|P98133|FBN1_BOVIN Fibrillin-1 OS=Bos taurus GN=FBN1 PE=1 SV=1

 Score =  126 bits (316), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 106/332 (31%), Positives = 150/332 (45%), Gaps = 29/332 (8%)

Query: 10   LLGVRAIVDINECQ-SNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKP 68
            +L     VD +EC   NPCG N TC +  G + C C+E +   P   C DI+EC      
Sbjct: 2158 ILQGNECVDTDECSVGNPCG-NGTCKNVIGGFECTCEEGFEPGPMMTCEDINECAQNPLL 2216

Query: 69   CGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSE-----CSSNFECVNNAECVD 123
            C  R  C NT   + C CP GY  + D ++ C+  D   E          EC N      
Sbjct: 2217 CAFR--CVNTYGSYECKCPAGYVLREDRRM-CKDEDECEEGKHDCAEKQMECKNLIGTY- 2272

Query: 124  GLCYCRPGFDAR--GSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKC 181
             LC C PG+  R  G  CVD +ECQ         +C NT GS+ C+C +G+  +P + +C
Sbjct: 2273 -LCICGPGYQRRPDGEGCVDENECQTKPGICENGRCLNTRGSYTCECNDGFTASPNQDEC 2331

Query: 182  KDVRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKL--FVIEDAKRNL-- 237
             D R  +  T +      + S   +         +  R +  H ++  F    A + L  
Sbjct: 2332 LDNREGYCFTEVLQNMCQIGSSNRNPVTKSECCCDGGRGWGPHCEICPFQGTVAFKKLCP 2391

Query: 238  -------NRVDINECQS-NPCGVNATCIDTQGSYSCVCKEHYTGD-PYQACSDIDECKAL 288
                   N  DI+EC+  +    N  C++ +GSY C+CK  YT D    AC D++EC   
Sbjct: 2392 HGRGFMTNGADIDECKVIHDVCRNGECVNDRGSYHCICKTGYTPDITGTACVDLNECNQA 2451

Query: 289  DKPCGLRAICENTVPGFNCLCPKGYSGKPDAK 320
             KPC    IC+NT   + C CPKGY  + D +
Sbjct: 2452 PKPCNF--ICKNTEGSYQCSCPKGYILQEDGR 2481

Fibrillins are structural components of 10-12 nm extracellular calcium-binding microfibrils, which occur either in association with elastin or in elastin-free bundles. Fibrillin-1-containing microfibrils provide long-term force bearing structural support. Regulates osteoblast maturation by controlling TGF-beta bioavailability and calibrating TGF-beta and BMP levels, respectively.

Bos taurus (taxid: 9913)

>sp|Q9TV36|FBN1_PIG Fibrillin-1 OS=Sus scrofa GN=FBN1 PE=2 SV=1

 Score =  126 bits (316), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 106/332 (31%), Positives = 150/332 (45%), Gaps = 29/332 (8%)

Query: 10   LLGVRAIVDINECQ-SNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKP 68
            +L     VD +EC   NPCG N TC +  G + C C+E +   P   C DI+EC      
Sbjct: 2158 ILEGNECVDTDECSVGNPCG-NGTCKNVIGGFECTCEEGFEPGPMMTCEDINECAQNPLL 2216

Query: 69   CGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSE-----CSSNFECVNNAECVD 123
            C  R  C NT   + C CP GY  + D ++ C+  D   E          EC N      
Sbjct: 2217 CAFR--CVNTYGSYECKCPTGYVLREDRRM-CKDEDECEEGKHDCAEKQMECKNLIGMY- 2272

Query: 124  GLCYCRPGFDAR--GSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKC 181
             +C C PG+  R  G  CVD +ECQ         +C NT GS+ C+C +G+  +P + +C
Sbjct: 2273 -ICICGPGYQRRPDGEGCVDENECQTKPGICENGRCLNTRGSYTCECNDGFTASPTQDEC 2331

Query: 182  KDVRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKL--FVIEDAKRNL-- 237
             D R  +  T +      + S   +         +  R +  H ++  F    A + L  
Sbjct: 2332 LDNREGYCFTEVLQNMCQIGSSNRNPVTKSECCCDGGRGWGPHCEICPFQGTVAFKKLCP 2391

Query: 238  -------NRVDINECQS-NPCGVNATCIDTQGSYSCVCKEHYTGD-PYQACSDIDECKAL 288
                   N  DI+EC+  +    N  CI+ +GSY C+CK  YT D    AC D++EC   
Sbjct: 2392 HGRGFMTNGADIDECKVIHDVCRNGECINDRGSYHCICKTGYTPDITGTACVDLNECNQA 2451

Query: 289  DKPCGLRAICENTVPGFNCLCPKGYSGKPDAK 320
             KPC    IC+NT   + C CPKGY  + D +
Sbjct: 2452 PKPCNF--ICKNTEGSYQCSCPKGYILQEDGR 2481

Fibrillins are structural components of 10-12 nm extracellular calcium-binding microfibrils, which occur either in association with elastin or in elastin-free bundles. Fibrillin-1-containing microfibrils provide long-term force bearing structural support. Regulates osteoblast maturation by controlling TGF-beta bioavailability and calibrating TGF-beta and BMP levels, respectively.

Sus scrofa (taxid: 9823)

>sp|P35555|FBN1_HUMAN Fibrillin-1 OS=Homo sapiens GN=FBN1 PE=1 SV=3

 Score =  124 bits (311), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 150/332 (45%), Gaps = 29/332 (8%)

Query: 10   LLGVRAIVDINECQ-SNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKP 68
            +L     VD +EC   NPCG N TC +  G + C C+E +   P   C DI+EC      
Sbjct: 2158 ILAGNECVDTDECSVGNPCG-NGTCKNVIGGFECTCEEGFEPGPMMTCEDINECAQNPLL 2216

Query: 69   CGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSE-----CSSNFECVNNAECVD 123
            C  R  C NT   + C CP GY  + D ++ C+  D   E          EC N      
Sbjct: 2217 CAFR--CVNTYGSYECKCPVGYVLREDRRM-CKDEDECEEGKHDCTEKQMECKNLIGTY- 2272

Query: 124  GLCYCRPGFDAR--GSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKC 181
             +C C PG+  R  G  CVD +ECQ         +C NT GS+ C+C +G+  +P + +C
Sbjct: 2273 -MCICGPGYQRRPDGEGCVDENECQTKPGICENGRCLNTRGSYTCECNDGFTASPNQDEC 2331

Query: 182  KDVRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKL--FVIEDAKRNL-- 237
             D R  +  T +      + S   +         +  R +  H ++  F    A + L  
Sbjct: 2332 LDNREGYCFTEVLQNMCQIGSSNRNPVTKSECCCDGGRGWGPHCEICPFQGTVAFKKLCP 2391

Query: 238  -------NRVDINECQS-NPCGVNATCIDTQGSYSCVCKEHYTGD-PYQACSDIDECKAL 288
                   N  DI+EC+  +    N  C++ +GSY C+CK  YT D    +C D++EC   
Sbjct: 2392 HGRGFMTNGADIDECKVIHDVCRNGECVNDRGSYHCICKTGYTPDITGTSCVDLNECNQA 2451

Query: 289  DKPCGLRAICENTVPGFNCLCPKGYSGKPDAK 320
             KPC    IC+NT   + C CPKGY  + D +
Sbjct: 2452 PKPCNF--ICKNTEGSYQCSCPKGYILQEDGR 2481

Fibrillins are structural components of 10-12 nm extracellular calcium-binding microfibrils, which occur either in association with elastin or in elastin-free bundles. Fibrillin-1-containing microfibrils provide long-term force bearing structural support. Regulates osteoblast maturation by controlling TGF-beta bioavailability and calibrating TGF-beta and BMP levels, respectively.

Homo sapiens (taxid: 9606)

>sp|P35556|FBN2_HUMAN Fibrillin-2 OS=Homo sapiens GN=FBN2 PE=1 SV=3

 Score =  123 bits (309), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/331 (31%), Positives = 147/331 (44%), Gaps = 30/331 (9%)

Query: 12   GVRAIVDINECQ-SNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCG 70
            GVR  VD +EC   NPCG N TC +  GS+ C C E +   P   C DI+EC      C 
Sbjct: 2208 GVRC-VDTDECSIGNPCG-NGTCTNVIGSFECNCNEGFEPGPMMNCEDINECAQNPLLCA 2265

Query: 71   LRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSEC-----SSNFECVNNAECVDGL 125
             R  C NT   + C CP GY+ + D K+ C+ +D  +E      S    C N       +
Sbjct: 2266 FR--CMNTFGSYECTCPIGYALREDQKM-CKDLDECAEGLHDCESRGMMCKNLIGTF--M 2320

Query: 126  CYCRPGFDAR--GSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKD 183
            C C PG   R  G  CVD +EC+         +C N  GS+RC+C EG+  +    +C D
Sbjct: 2321 CICPPGMARRPDGEGCVDENECRTKPGICENGRCVNIIGSYRCECNEGFQSSSSGTECLD 2380

Query: 184  VRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKR-------- 235
             R       +      + S + ++        +  R +    +L  +    +        
Sbjct: 2381 NRQGLCFAEVLQTICQMASSSRNLVTKSECCCDGGRGWGHQCELCPLPGTAQYKKICPHG 2440

Query: 236  ---NLNRVDINECQSNP-CGVNATCIDTQGSYSCVCKEHYTGD-PYQACSDIDECKALDK 290
                 +  DI+EC+  P    N  CI+T GS+ C CK  YT D    +C D+DEC    K
Sbjct: 2441 PGYTTDGRDIDECKVMPNLCTNGQCINTMGSFRCFCKVGYTTDISGTSCIDLDECSQSPK 2500

Query: 291  PCGLRAICENTVPGFNCLCPKGYSGKPDAKV 321
            PC    IC+NT   + C CP+GY  + D K 
Sbjct: 2501 PCNY--ICKNTEGSYQCSCPRGYVLQEDGKT 2529

Fibrillins are structural components of 10-12 nm extracellular calcium-binding microfibrils, which occur either in association with elastin or in elastin-free bundles. Fibrillin-2-containing microfibrils regulate the early process of elastic fiber assembly. Regulates osteoblast maturation by controlling TGF-beta bioavailability and calibrating TGF-beta and BMP levels, respectively.

Homo sapiens (taxid: 9606)

>sp|Q75N90|FBN3_HUMAN Fibrillin-3 OS=Homo sapiens GN=FBN3 PE=2 SV=3

 Score =  122 bits (305), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 143/309 (46%), Gaps = 44/309 (14%)

Query: 18   DINECQ--SNPCGVNATCIDTQGSYSCVCKEHYTGDPY-QACSDIDECKALDKPCGLRAI 74
            D++EC+  ++ C  +  CI++ GS+ C C+  YT D     C D+DEC  + KPC    +
Sbjct: 2363 DVDECRMLAHLC-AHGECINSLGSFRCHCQAGYTPDATATTCLDMDECSQVPKPCTF--L 2419

Query: 75   CENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSS-----NFECVNNAECVDGLCYCR 129
            C+NT   F C CP+GY  + D +  C+ +D   EC+S      F CVN        C C 
Sbjct: 2420 CKNTKGSFLCSCPRGYLLEEDGRT-CKDLD---ECTSRQHNCQFLCVNTVGAF--TCRCP 2473

Query: 130  PGFDARGSVCVDVDECQLG-DPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEF 188
            PGF      C D DEC     PCG    C NTPGSFRC+C +G+        C+DV    
Sbjct: 2474 PGFTQHHQACFDNDECSAQPGPCGAHGHCHNTPGSFRCECHQGFTLVSSGHGCEDVN--- 2530

Query: 189  NVTLLFYETDYLHSVASDISDILTIIH-EFSRIFSKHLKLFVIEDAKRNLNRVDINECQS 247
                   E D  H       + L        + F++H +             VD NEC  
Sbjct: 2531 -------ECDGPHRCQHGCQNQLGGYRCSCPQGFTQHSQWAQC---------VDENECAL 2574

Query: 248  NP--CGVNATCIDTQGSYSCVCKEHYTGD-PYQACSDIDECKALDKPCGLRAICENTVPG 304
            +P  CG +A+C +T G + CVC   +  D     C ++DEC     PC     C NT  G
Sbjct: 2575 SPPTCG-SASCRNTLGGFRCVCPSGFDFDQALGGCQEVDECAGRRGPCSYS--CANTPGG 2631

Query: 305  FNCLCPKGY 313
            F C CP+GY
Sbjct: 2632 FLCGCPQGY 2640

Fibrillins are structural components of 10-12 nm extracellular calcium-binding microfibrils, which occur either in association with elastin or in elastin-free bundles. Fibrillin-containing microfibrils provide long-term force bearing structural support.

Homo sapiens (taxid: 9606)

>sp|Q61554|FBN1_MOUSE Fibrillin-1 OS=Mus musculus GN=Fbn1 PE=1 SV=1

 Score =  121 bits (304), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 150/332 (45%), Gaps = 29/332 (8%)

Query: 10   LLGVRAIVDINECQ-SNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKP 68
            +L     VD +EC   NPCG N TC +  G + C C+E +   P   C DI+EC      
Sbjct: 2158 ILEGNECVDTDECSVGNPCG-NGTCKNVIGGFECTCEEGFEPGPMMTCEDINECAQNPLL 2216

Query: 69   CGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSE-----CSSNFECVNNAECVD 123
            C  R  C NT   + C CP GY  + D ++ C+  D  +E          EC N      
Sbjct: 2217 CAFR--CVNTYGSYECKCPVGYVLREDRRM-CKDEDECAEGKHDCTEKQMECKNLIGTY- 2272

Query: 124  GLCYCRPGFDAR--GSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKC 181
             +C C PG+  R  G  C+D +ECQ         +C NT GS+ C+C +G+  +P + +C
Sbjct: 2273 -MCICGPGYQRRPDGEGCIDENECQTKPGICENGRCLNTLGSYTCECNDGFTASPTQDEC 2331

Query: 182  KDVRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIED--AKRNL-- 237
             D R  +  + +F     + S   +            R +  H ++   E   A + L  
Sbjct: 2332 LDNREGYCFSEVFENMCQIGSSNRNPVTKSECCCVGGRGWGLHCEICPFEGTVAYKKLCP 2391

Query: 238  -------NRVDINECQS-NPCGVNATCIDTQGSYSCVCKEHYTGD-PYQACSDIDECKAL 288
                   N  D++EC+  +    N  C++ +GSY C+CK  YT D    +C D++EC   
Sbjct: 2392 HGRGFMTNGADVDECKVIHDVCRNGECVNDRGSYHCICKTGYTPDITGTSCVDLNECNQA 2451

Query: 289  DKPCGLRAICENTVPGFNCLCPKGYSGKPDAK 320
             KPC    IC+NT   + C CP GY  + D +
Sbjct: 2452 PKPCNF--ICKNTEGSYQCSCPNGYILQEDGR 2481

Fibrillins are structural components of 10-12 nm extracellular calcium-binding microfibrils, which occur either in association with elastin or in elastin-free bundles. Fibrillin-1-containing microfibrils provide long-term force bearing structural support. Regulates osteoblast maturation by controlling TGF-beta bioavailability and calibrating TGF-beta and BMP levels, respectively.

Mus musculus (taxid: 10090)

>sp|Q9NS15|LTBP3_HUMAN Latent-transforming growth factor beta-binding protein 3 OS=Homo sapiens GN=LTBP3 PE=1 SV=4

 Score =  121 bits (303), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 103/334 (30%), Positives = 144/334 (43%), Gaps = 43/334 (12%)

Query: 14  RAIVDINECQSNPCGVN-ATCIDTQGSYSCVCKEHY---TGDPYQACSDIDECKALDKPC 69
           R  VD+NEC++ PCG     C++T GSY+C C   Y    G   ++C D++EC A    C
Sbjct: 612 RYCVDVNECEAEPCGPGRGICMNTGGSYNCHCNRGYRLHVGAGGRSCVDLNEC-AKPHLC 670

Query: 70  GLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLC--- 126
           G    C N    + C C  GY  K      CE +D         EC + + C DG C   
Sbjct: 671 GDGGFCINFPGHYKCNCYPGYRLKASRPPVCEDID---------ECRDPSSCPDGKCENK 721

Query: 127 -------YCRPGFDARGS-VCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPR 178
                   C+PG+ ++G   C DV+EC  G PC P   C N PGSFRC C +GY  AP  
Sbjct: 722 PGSFKCIACQPGYRSQGGGACRDVNECAEGSPCSP-GWCENLPGSFRCTCAQGYAPAPDG 780

Query: 179 IKCKDVRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLN 238
             C DV                   A D+ D     +       + L  + +   + +  
Sbjct: 781 RSCLDVD---------------ECEAGDVCDNGICSNTPGSFQCQCLSGYHLSRDRSHCE 825

Query: 239 RVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAIC 298
             DI+EC      +   CI+T GSY C+C + +     + C DIDEC      C     C
Sbjct: 826 --DIDECDFPAACIGGDCINTNGSYRCLCPQGHRLVGGRKCQDIDECSQDPSLCLPHGAC 883

Query: 299 ENTVPGFNCLCPKGYSGKPDAKVACEQEKAGEKK 332
           +N    + C+C +G++   D     E E+   KK
Sbjct: 884 KNLQGSYVCVCDEGFTPTQDQHGCEEVEQPHHKK 917

May be involved in the assembly, secretion and targeting of TGFB1 to sites at which it is stored and/or activated. May play critical roles in controlling and directing the activity of TGFB1. May have a structural role in the extra cellular matrix (ECM).

Homo sapiens (taxid: 9606)

>sp|Q07008|NOTC1_RAT Neurogenic locus notch homolog protein 1 OS=Rattus norvegicus GN=Notch1 PE=2 SV=2

 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 110/326 (33%), Positives = 153/326 (46%), Gaps = 49/326 (15%)

Query: 18  DINECQ--SNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSD-IDECKALDKPCGLRAI 74
           D++ECQ   N C    TC ++ G Y+CVC   +TG   + CSD ID+C +    C   A 
Sbjct: 295 DVDECQLMPNACQNAGTCHNSHGGYNCVCVNGWTG---EDCSDNIDDCAS--AACFQGAT 349

Query: 75  CENTVPGFNCLCPKGYSGKPDAKVACEQVD--VTSECSSNFECVNNAECVDGLCYCRPGF 132
           C + V  F C CP G +G     + C   D  +++ C+    C  N      +C C  G+
Sbjct: 350 CHDRVASFYCECPHGRTG-----LLCHLNDACISNPCNEGSNCDTNPVNGKAICTCPRGY 404

Query: 133 DARGSVCV-DVDECQLG-DPCGPQAQCTNTPGSFRCDCVEGYVGAPPR------------ 178
              G  C  DVDEC LG +PC    +C NT GSF C C++GY G  PR            
Sbjct: 405 --TGPACSQDVDECALGANPCEHAGKCLNTLGSFECQCLQGYTG--PRCEIDVNECISNP 460

Query: 179 ----IKCKDVRWEFN-VTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDA 233
                 C D   EF  + +  YE  Y   + +D       +H   R   K +  F+ +  
Sbjct: 461 CQNDATCLDQIGEFQCICMPGYEGVYCE-INTDECASSPCLHN-GRCVDK-INEFLCQCP 517

Query: 234 K---RNLNRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDK 290
           K    +L + D++EC S PC   A C+D   +Y+CVC E YTG   +   DIDEC     
Sbjct: 518 KGFSGHLCQYDVDECASTPCKNGAKCLDGPNTYTCVCTEGYTGTHCEV--DIDECDP--D 573

Query: 291 PCGLRAICENTVPGFNCLCPKGYSGK 316
           PC +  +C++ V  F CLC  GY+G 
Sbjct: 574 PCHI-GLCKDGVATFTCLCQPGYTGH 598

Functions as a receptor for membrane-bound ligands Jagged1, Jagged2 and Delta1 to regulate cell-fate determination. Upon ligand activation through the released notch intracellular domain (NICD) it forms a transcriptional activator complex with RBPJ/RBPSUH and activates genes of the enhancer of split locus. Affects the implementation of differentiation, proliferation and apoptotic programs. May be important for follicular differentiation and possibly cell fate selection within the follicle. During cerebellar development, may function as a receptor for neuronal DNER and may be involved in the differentiation of Bergmann glia. Represses neuronal and myogenic differentiation. May enhance HIF1A function by sequestering HIF1AN away from HIF1A (By similarity). Acts instructively to control the cell fate determination of CNS multipotent progenitor cells, resulting in astroglial induction and neuron/oligodendrocyte suppression.

Rattus norvegicus (taxid: 10116)

>sp|Q01705|NOTC1_MOUSE Neurogenic locus notch homolog protein 1 OS=Mus musculus GN=Notch1 PE=1 SV=3

 Score =  112 bits (281), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 106/324 (32%), Positives = 148/324 (45%), Gaps = 45/324 (13%)

Query: 18  DINECQ--SNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAIC 75
           D++ECQ   N C    TC +T G Y+CVC   +TG+      +ID+C +    C   A C
Sbjct: 295 DVDECQLMPNACQNGGTCHNTHGGYNCVCVNGWTGE--DCSENIDDCAS--AACFQGATC 350

Query: 76  ENTVPGFNCLCPKGYSGKPDAKVACEQVD--VTSECSSNFECVNNAECVDGLCYCRPGFD 133
            + V  F C CP G +G     + C   D  +++ C+    C  N      +C C  G+ 
Sbjct: 351 HDRVASFYCECPHGRTG-----LLCHLNDACISNPCNEGSNCDTNPVNGKAICTCPSGY- 404

Query: 134 ARGSVCV-DVDECQLG-DPCGPQAQCTNTPGSFRCDCVEGYVGAPPR------------- 178
             G  C  DVDEC LG +PC    +C NT GSF C C++GY G  PR             
Sbjct: 405 -TGPACSQDVDECALGANPCEHAGKCLNTLGSFECQCLQGYTG--PRCEIDVNECISNPC 461

Query: 179 ---IKCKDVRWEFN-VTLLFYETDY--LHSVASDISDILTIIHEFSRIFSKHLKLFVIED 232
                C D   EF  + +  YE  Y  +++     S  L   H   +I     +    + 
Sbjct: 462 QNDATCLDQIGEFQCICMPGYEGVYCEINTDECASSPCLHNGHCMDKI--NEFQCQCPKG 519

Query: 233 AKRNLNRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPC 292
              +L + D++EC S PC   A C+D   +Y+CVC E YTG   +   DIDEC     PC
Sbjct: 520 FNGHLCQYDVDECASTPCKNGAKCLDGPNTYTCVCTEGYTGTHCEV--DIDECDP--DPC 575

Query: 293 GLRAICENTVPGFNCLCPKGYSGK 316
              + C++ V  F CLC  GY+G 
Sbjct: 576 HYGS-CKDGVATFTCLCQPGYTGH 598

Functions as a receptor for membrane-bound ligands Jagged1, Jagged2 and Delta1 to regulate cell-fate determination. Upon ligand activation through the released notch intracellular domain (NICD) it forms a transcriptional activator complex with RBPJ/RBPSUH and activates genes of the enhancer of split locus. Affects the implementation of differentiation, proliferation and apoptotic programs (By similarity). May play an essential role in postimplantation development, probably in some aspect of cell specification and/or differentiation. May be involved in mesoderm development, somite formation and neurogenesis. Involved in the maturation of both CD4+ and CD8+ cells in the thymus. Important for follicular differentiation and possibly cell fate selection within the follicle. During cerebellar development, functions as a receptor for neuronal DNER and is involved in the differentiation of Bergmann glia. Represses neuronal and myogenic differentiation. May enhance HIF1A function by sequestering HIF1AN away from HIF1A.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
195386886	3915	GJ17387 [Drosophila virilis] gi|19414859	0.891	0.075	0.485	3e-71
195117710	7357	GI17886 [Drosophila mojavensis] gi|19391	0.882	0.039	0.480	1e-70
195052558	7303	GH13743 [Drosophila grimshawi] gi|193900	0.882	0.040	0.483	2e-70
328714521	16577	PREDICTED: hypothetical protein LOC10016	0.855	0.017	0.471	2e-70
194766193	2634	GF23960 [Drosophila ananassae] gi|190617	0.885	0.111	0.470	6e-70
270013391	21117	hypothetical protein TcasGA2_TC011986 [T	0.870	0.013	0.472	2e-69
442625910	22830	dumpy, isoform R [Drosophila melanogaste	0.882	0.012	0.469	3e-69
386769086	15638	dumpy, isoform I [Drosophila melanogaste	0.882	0.018	0.466	4e-69
442625922	14825	dumpy, isoform X [Drosophila melanogaste	0.882	0.019	0.466	4e-69
386769088	15105	dumpy, isoform J [Drosophila melanogaste	0.882	0.019	0.466	4e-69

>gi|195386886|ref|XP_002052135.1| GJ17387 [Drosophila virilis] gi|194148592|gb|EDW64290.1| GJ17387 [Drosophila virilis]

 Score =  275 bits (702), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 151/311 (48%), Positives = 188/311 (60%), Gaps = 15/311 (4%)

Query: 15  AIVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAI 74
           A  DINECQ NPCG NA C DT GS+ C CK  YTGDP++ C DIDEC ALDKPCG  AI
Sbjct: 454 AKCDINECQDNPCGENAICTDTVGSFVCSCKPDYTGDPFRGCVDIDECAALDKPCGQHAI 513

Query: 75  CENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDA 134
           CENTVPG+NC CP+GY GKPD KVACEQVDV   C SNF+C NNAEC++  C+C  GF+ 
Sbjct: 514 CENTVPGYNCKCPQGYDGKPDPKVACEQVDVNILCRSNFDCTNNAECIENQCFCLDGFEP 573

Query: 135 RGSVCVDVDECQL-GDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLL 193
            GS CVD+DEC+   + CGP AQC NTPGS+RCDC  GYVG+PPR+ CK    + +    
Sbjct: 574 IGSSCVDIDECRTHAEACGPHAQCLNTPGSYRCDCEAGYVGSPPRMACKQPCEDVHCGAH 633

Query: 194 FYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQSNPCGVN 253
            Y          D ++   +  +        +    ++     ++  D+       CG N
Sbjct: 634 AY-------CKPDQNEAYCVCEDGWTYNPSDVAAGCVD-----IDECDVLHGPFGSCGYN 681

Query: 254 ATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV-PGFNCLCPKG 312
           A+C +T G YSC C   ++GDP+  C D+DEC+A  K CG  A C N    G+ C CP+G
Sbjct: 682 ASCTNTPGGYSCACPPGFSGDPHSKCLDVDECRAGGK-CGAGADCVNMPGGGYTCRCPEG 740

Query: 313 YSGKPDAKVAC 323
               PD  V C
Sbjct: 741 TISDPDPSVRC 751

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195117710|ref|XP_002003390.1| GI17886 [Drosophila mojavensis] gi|193913965|gb|EDW12832.1| GI17886 [Drosophila mojavensis]

 Score =  272 bits (696), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 148/308 (48%), Positives = 186/308 (60%), Gaps = 15/308 (4%)

Query: 18  DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICEN 77
           +INECQ NPCG NA C DT GS+ C CK  YTGDP++ C DIDEC ALDKPCG  AICEN
Sbjct: 453 NINECQDNPCGENAVCTDTIGSFVCTCKPDYTGDPFRGCVDIDECAALDKPCGQHAICEN 512

Query: 78  TVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGS 137
            VPG+NC CP+GY GKPD KVACEQVDV   C +NF+C NNAEC++  C+C  GF+  GS
Sbjct: 513 AVPGYNCKCPQGYDGKPDPKVACEQVDVNILCRTNFDCTNNAECIENQCFCLDGFEPIGS 572

Query: 138 VCVDVDECQL-GDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYE 196
            CVD+DEC+   + CGP AQC NTPGS+RCDC  GYVG+PPR+ CK    +       Y 
Sbjct: 573 SCVDIDECRTHAEACGPHAQCLNTPGSYRCDCEAGYVGSPPRMACKQPCEDVRCGAHAY- 631

Query: 197 TDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATC 256
                    D ++   +  E        +    ++     ++  D+       CG NATC
Sbjct: 632 ------CKPDQNEAYCVCEEGWTYNPSDVAAGCVD-----IDECDLLHGPFGSCGQNATC 680

Query: 257 IDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV-PGFNCLCPKGYSG 315
            ++ G YSC C   ++GDP+  C D+DEC+A +K CG+ A C N    G+ C CP G   
Sbjct: 681 TNSPGGYSCACPPGFSGDPHTKCQDVDECRAGNK-CGIGAECVNMAGGGYTCRCPDGTLP 739

Query: 316 KPDAKVAC 323
            PD  V C
Sbjct: 740 DPDPAVHC 747

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195052558|ref|XP_001993322.1| GH13743 [Drosophila grimshawi] gi|193900381|gb|EDV99247.1| GH13743 [Drosophila grimshawi]

 Score =  272 bits (695), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 149/308 (48%), Positives = 187/308 (60%), Gaps = 15/308 (4%)

Query: 18  DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICEN 77
           +INECQ NPCG NA C DT GS+ C CK  YTGDP++ C DIDEC ALDKPCG  AICEN
Sbjct: 481 NINECQDNPCGENAICTDTVGSFICTCKSDYTGDPFRGCVDIDECAALDKPCGQHAICEN 540

Query: 78  TVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGS 137
            VPG+NC CP+GY GKPD KVACEQVDV   C SNF+C NNAEC++  C+C  GF+  GS
Sbjct: 541 AVPGYNCKCPQGYDGKPDPKVACEQVDVNVLCRSNFDCTNNAECIENQCFCLDGFEPIGS 600

Query: 138 VCVDVDECQL-GDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYE 196
            CVD+DEC+   + CGP AQC NTPGS+RCDC  GYVG+PPR+ CK    + +     Y 
Sbjct: 601 SCVDIDECRTHAEACGPHAQCMNTPGSYRCDCEAGYVGSPPRMPCKQPCEDVHCGAHAY- 659

Query: 197 TDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATC 256
                    D ++   +  E        +    I+     ++  D+       CG NA+C
Sbjct: 660 ------CKPDQNEAYCVCEEGWTYNPSDVAAGCID-----IDECDVLHGPFGSCGQNASC 708

Query: 257 IDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV-PGFNCLCPKGYSG 315
            +T G++SC C   ++GDP+  C D+DEC+A  K CG  A C N    G+ C CP+G   
Sbjct: 709 TNTPGAFSCACPPGFSGDPHSKCLDVDECRAGGK-CGAGADCVNMQGGGYTCRCPEGTLP 767

Query: 316 KPDAKVAC 323
            PD  V C
Sbjct: 768 DPDPSVRC 775

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328714521|ref|XP_003245382.1| PREDICTED: hypothetical protein LOC100166039 [Acyrthosiphon pisum]

 Score =  271 bits (694), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 150/318 (47%), Positives = 188/318 (59%), Gaps = 34/318 (10%)

Query: 18  DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICEN 77
           ++NEC+  PCG N  C DT GS+ C CKE YTGDP + C DI+EC+   KPCG  A+CEN
Sbjct: 417 NVNECEHAPCGNNTICTDTVGSFVCSCKEDYTGDPMKGCHDINECEIFSKPCGPNAVCEN 476

Query: 78  TVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGS 137
           T PGFNCLCP+GYSGKPD KVACEQVDVT  C SNF+C  NAEC +G C+C+ GFDA+GS
Sbjct: 477 TSPGFNCLCPQGYSGKPDPKVACEQVDVTVLCKSNFDCTTNAECTEGQCFCKNGFDAKGS 536

Query: 138 VCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYET 197
           VCVD+DEC L  PCGP + C+NTPG F C C  GYVGAPPRI+CK               
Sbjct: 537 VCVDIDEC-LAQPCGPYSMCSNTPGGFHCQCQTGYVGAPPRIQCK--------------- 580

Query: 198 DYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNR-----VDINECQS----- 247
                  +   D+    H F +   +       E    N N      VDI+EC       
Sbjct: 581 -------APCEDVKCGTHAFCKPNGQEAYCICEEGWTYNPNDLSLGCVDIDECDKVNGPF 633

Query: 248 NPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNC 307
             CG N  C +T GS+ C CK  +TG+ ++ C+DI+EC   +  CG  A+C N    F+C
Sbjct: 634 GRCGGNTLCTNTPGSFGCQCKPGFTGNAFKQCTDINECTDTNS-CGKDALCINLPGSFDC 692

Query: 308 LCPKGYSGKPDAKVACEQ 325
           +CP G   +PD  + C +
Sbjct: 693 VCPGGSIPEPDPFIKCTK 710

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194766193|ref|XP_001965209.1| GF23960 [Drosophila ananassae] gi|190617819|gb|EDV33343.1| GF23960 [Drosophila ananassae]

 Score =  270 bits (690), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 145/308 (47%), Positives = 184/308 (59%), Gaps = 14/308 (4%)

Query: 18  DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICEN 77
           +INECQ NPCG NA C DT GS+ C CK  YTGDP++ C DIDEC ALDKPCG  A+CEN
Sbjct: 205 NINECQDNPCGENAICTDTIGSFVCTCKPDYTGDPFRGCVDIDECTALDKPCGQHAVCEN 264

Query: 78  TVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGS 137
            VPG+NC CP+GY GKPD KVACEQVDV   CSSNF+C NNAEC++  C+C  GF+  G+
Sbjct: 265 AVPGYNCKCPQGYDGKPDPKVACEQVDVNILCSSNFDCTNNAECIENQCFCLDGFEPIGA 324

Query: 138 VCVDVDECQLG-DPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYE 196
            CVD+DEC+   + CGP AQC NTPGS+RCDC  GYVG+PPR+ CK    +       Y 
Sbjct: 325 SCVDIDECRTNPNVCGPHAQCLNTPGSYRCDCEAGYVGSPPRMPCKQPCEDVKCGAHAY- 383

Query: 197 TDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATC 256
                    D ++   +  E        +    ++     ++  D+       CG NATC
Sbjct: 384 ------CKPDQNEAYCVCEEGWTYNPSDVSAGCVD-----IDECDVMHGPFGSCGHNATC 432

Query: 257 IDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV-PGFNCLCPKGYSG 315
            ++ G Y+C C   ++GDP+  C D+DEC+     CGL A C N    G+ C CP+    
Sbjct: 433 SNSPGGYTCACPPGFSGDPHSKCVDVDECRTGSSKCGLGAECVNMQGGGYTCRCPESTIA 492

Query: 316 KPDAKVAC 323
            PD  V C
Sbjct: 493 DPDPSVRC 500

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270013391|gb|EFA09839.1| hypothetical protein TcasGA2_TC011986 [Tribolium castaneum]

 Score =  269 bits (687), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 148/313 (47%), Positives = 189/313 (60%), Gaps = 24/313 (7%)

Query: 18  DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICEN 77
           +INEC +NPCG NA C DT GSY+C CKE YTGDP++ C DIDEC+AL++PCG  AICEN
Sbjct: 462 NINECDTNPCGENAVCKDTLGSYTCSCKEDYTGDPFKGCVDIDECQALERPCGAHAICEN 521

Query: 78  TVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGS 137
            VPG+NC+CP+GY GKP  KVACEQ+DV   C SNF+C NNAEC++  C+C+ GF  +GS
Sbjct: 522 AVPGYNCICPQGYQGKPSPKVACEQIDVNILCKSNFDCTNNAECIENQCFCQKGFVPKGS 581

Query: 138 VCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYET 197
           VCVD+DECQ   PCG  + CTNT GSF CDC  G+VGAPP ++CK    +          
Sbjct: 582 VCVDIDECQ-AQPCGQYSICTNTIGSFHCDCENGFVGAPPMVQCKAPCEDVKCG------ 634

Query: 198 DYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINEC-----QSNPCGV 252
              H+           I E    F+ H       D       +DINEC      S  CG 
Sbjct: 635 --DHAYCKPDGQEAYCICEDGWTFNPH-------DIAAGC--IDINECDEINGPSGRCGK 683

Query: 253 NATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKG 312
           NA C +  G+++C C + +TG+P   C D DEC   +  CG+ A+CENT   + C CP+G
Sbjct: 684 NALCTNLPGTFACQCPQGFTGNPSVQCQDFDECSKPNS-CGIGAVCENTPGSYTCKCPEG 742

Query: 313 YSGKPDAKVACEQ 325
               PD +  C +
Sbjct: 743 TVPSPDPRTKCNE 755

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442625910|ref|NP_001260033.1| dumpy, isoform R [Drosophila melanogaster] gi|440213318|gb|AGB92569.1| dumpy, isoform R [Drosophila melanogaster]

 Score =  268 bits (684), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 145/309 (46%), Positives = 184/309 (59%), Gaps = 16/309 (5%)

Query: 18  DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICEN 77
           DINECQ NPCG NA C DT GS+ C CK  YTGDP++ C DIDEC ALDKPCG  A+CEN
Sbjct: 338 DINECQDNPCGENAICTDTVGSFVCTCKPDYTGDPFRGCVDIDECTALDKPCGQHAVCEN 397

Query: 78  TVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGS 137
           TVPG+NC CP+GY GKPD KVACEQVDV   CSSNF+C NNAEC++  C+C  GF+  GS
Sbjct: 398 TVPGYNCKCPQGYDGKPDPKVACEQVDVNILCSSNFDCTNNAECIENQCFCLDGFEPIGS 457

Query: 138 VCVDVDECQL-GDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYE 196
            CVD+DEC+   + CGP AQC NTPGS+ C+C  GYVG+PPR+ CK    +       Y 
Sbjct: 458 SCVDIDECRTHAEVCGPHAQCLNTPGSYGCECEAGYVGSPPRMACKQPCEDVRCGAHAY- 516

Query: 197 TDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATC 256
                    D ++   +  +        +    ++     ++  D+       CG NATC
Sbjct: 517 ------CKPDQNEAYCVCEDGWTYNPSDVAAGCVD-----IDECDVMHGPFGSCGQNATC 565

Query: 257 IDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVP--GFNCLCPKGYS 314
            ++ G ++C C   ++GDP+  C D+DEC+     CG  A C N VP  G+ C CP    
Sbjct: 566 TNSAGGFTCACPPGFSGDPHSKCVDVDECRTGASKCGAGAECVN-VPGGGYTCRCPGNTI 624

Query: 315 GKPDAKVAC 323
             PD  V C
Sbjct: 625 ADPDPSVRC 633

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386769086|ref|NP_001245875.1| dumpy, isoform I [Drosophila melanogaster] gi|383291323|gb|AFH03551.1| dumpy, isoform I [Drosophila melanogaster]

 Score =  268 bits (684), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 144/309 (46%), Positives = 184/309 (59%), Gaps = 16/309 (5%)

Query: 18  DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICEN 77
           +INECQ NPCG NA C DT GS+ C CK  YTGDP++ C DIDEC ALDKPCG  A+CEN
Sbjct: 457 NINECQDNPCGENAICTDTVGSFVCTCKPDYTGDPFRGCVDIDECTALDKPCGQHAVCEN 516

Query: 78  TVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGS 137
           TVPG+NC CP+GY GKPD KVACEQVDV   CSSNF+C NNAEC++  C+C  GF+  GS
Sbjct: 517 TVPGYNCKCPQGYDGKPDPKVACEQVDVNILCSSNFDCTNNAECIENQCFCLDGFEPIGS 576

Query: 138 VCVDVDECQL-GDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYE 196
            CVD+DEC+   + CGP AQC NTPGS+ C+C  GYVG+PPR+ CK    +       Y 
Sbjct: 577 SCVDIDECRTHAEVCGPHAQCLNTPGSYGCECEAGYVGSPPRMACKQPCEDVRCGAHAY- 635

Query: 197 TDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATC 256
                    D ++   +  +        +    ++     ++  D+       CG NATC
Sbjct: 636 ------CKPDQNEAYCVCEDGWTYNPSDVAAGCVD-----IDECDVMHGPFGSCGQNATC 684

Query: 257 IDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVP--GFNCLCPKGYS 314
            ++ G ++C C   ++GDP+  C D+DEC+     CG  A C N VP  G+ C CP    
Sbjct: 685 TNSAGGFTCACPPGFSGDPHSKCVDVDECRTGASKCGAGAECVN-VPGGGYTCRCPGNTI 743

Query: 315 GKPDAKVAC 323
             PD  V C
Sbjct: 744 ADPDPSVRC 752

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442625922|ref|NP_001260039.1| dumpy, isoform X [Drosophila melanogaster] gi|440213324|gb|AGB92575.1| dumpy, isoform X [Drosophila melanogaster]

 Score =  268 bits (684), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 144/309 (46%), Positives = 184/309 (59%), Gaps = 16/309 (5%)

Query: 18  DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICEN 77
           +INECQ NPCG NA C DT GS+ C CK  YTGDP++ C DIDEC ALDKPCG  A+CEN
Sbjct: 457 NINECQDNPCGENAICTDTVGSFVCTCKPDYTGDPFRGCVDIDECTALDKPCGQHAVCEN 516

Query: 78  TVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGS 137
           TVPG+NC CP+GY GKPD KVACEQVDV   CSSNF+C NNAEC++  C+C  GF+  GS
Sbjct: 517 TVPGYNCKCPQGYDGKPDPKVACEQVDVNILCSSNFDCTNNAECIENQCFCLDGFEPIGS 576

Query: 138 VCVDVDECQL-GDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYE 196
            CVD+DEC+   + CGP AQC NTPGS+ C+C  GYVG+PPR+ CK    +       Y 
Sbjct: 577 SCVDIDECRTHAEVCGPHAQCLNTPGSYGCECEAGYVGSPPRMACKQPCEDVRCGAHAY- 635

Query: 197 TDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATC 256
                    D ++   +  +        +    ++     ++  D+       CG NATC
Sbjct: 636 ------CKPDQNEAYCVCEDGWTYNPSDVAAGCVD-----IDECDVMHGPFGSCGQNATC 684

Query: 257 IDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVP--GFNCLCPKGYS 314
            ++ G ++C C   ++GDP+  C D+DEC+     CG  A C N VP  G+ C CP    
Sbjct: 685 TNSAGGFTCACPPGFSGDPHSKCVDVDECRTGASKCGAGAECVN-VPGGGYTCRCPGNTI 743

Query: 315 GKPDAKVAC 323
             PD  V C
Sbjct: 744 ADPDPSVRC 752

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386769088|ref|NP_001245876.1| dumpy, isoform J [Drosophila melanogaster] gi|383291324|gb|AFH03552.1| dumpy, isoform J [Drosophila melanogaster]

 Score =  267 bits (683), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 144/309 (46%), Positives = 184/309 (59%), Gaps = 16/309 (5%)

Query: 18  DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICEN 77
           +INECQ NPCG NA C DT GS+ C CK  YTGDP++ C DIDEC ALDKPCG  A+CEN
Sbjct: 457 NINECQDNPCGENAICTDTVGSFVCTCKPDYTGDPFRGCVDIDECTALDKPCGQHAVCEN 516

Query: 78  TVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGS 137
           TVPG+NC CP+GY GKPD KVACEQVDV   CSSNF+C NNAEC++  C+C  GF+  GS
Sbjct: 517 TVPGYNCKCPQGYDGKPDPKVACEQVDVNILCSSNFDCTNNAECIENQCFCLDGFEPIGS 576

Query: 138 VCVDVDECQL-GDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYE 196
            CVD+DEC+   + CGP AQC NTPGS+ C+C  GYVG+PPR+ CK    +       Y 
Sbjct: 577 SCVDIDECRTHAEVCGPHAQCLNTPGSYGCECEAGYVGSPPRMACKQPCEDVRCGAHAY- 635

Query: 197 TDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATC 256
                    D ++   +  +        +    ++     ++  D+       CG NATC
Sbjct: 636 ------CKPDQNEAYCVCEDGWTYNPSDVAAGCVD-----IDECDVMHGPFGSCGQNATC 684

Query: 257 IDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVP--GFNCLCPKGYS 314
            ++ G ++C C   ++GDP+  C D+DEC+     CG  A C N VP  G+ C CP    
Sbjct: 685 TNSAGGFTCACPPGFSGDPHSKCVDVDECRTGASKCGAGAECVN-VPGGGYTCRCPGNTI 743

Query: 315 GKPDAKVAC 323
             PD  V C
Sbjct: 744 ADPDPSVRC 752

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	332
FB|FBgn0053196	22	dp "dumpy" [Drosophila melanog	0.496	7.5	0.656	3e-80
ZFIN|ZDB-GENE-090112-3	2868	fbn2b "fibrillin 2b" [Danio re	0.825	0.095	0.308	3.6e-33
UNIPROTKB|F1SN67	2336	FBN1 "Fibrillin-1" [Sus scrofa	0.777	0.110	0.303	6.3e-29
UNIPROTKB|G3V9M6	2872	Fbn1 "Fibrillin 1, isoform CRA	0.481	0.055	0.385	1.6e-39
UNIPROTKB|F1RKK1	2432	FBN2 "Uncharacterized protein"	0.478	0.065	0.4	6.7e-42
UNIPROTKB|I3LJJ0	2433	FBN2 "Uncharacterized protein"	0.478	0.065	0.4	6.7e-42
UNIPROTKB|P35555	2871	FBN1 "Fibrillin-1" [Homo sapie	0.481	0.055	0.379	6.9e-39
UNIPROTKB|P35556	2912	FBN2 "Fibrillin-2" [Homo sapie	0.740	0.084	0.320	2.1e-30
UNIPROTKB|E2RS46	2921	FBN2 "Uncharacterized protein"	0.478	0.054	0.4	1.3e-41
UNIPROTKB|F1NII7	2822	FBN1 "Uncharacterized protein"	0.75	0.088	0.318	6.2e-29

FB|FBgn0053196 dp "dumpy" [Drosophila melanogaster (taxid:7227)]

 Score = 667 (239.9 bits), Expect = 3.0e-80, Sum P(2) = 3.0e-80
 Identities = 109/166 (65%), Positives = 128/166 (77%)

Query:    18 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICEN 77
             +INECQ NPCG NA C DT GS+ C CK  YTGDP++ C DIDEC ALDKPCG  A+CEN
Sbjct:   457 NINECQDNPCGENAICTDTVGSFVCTCKPDYTGDPFRGCVDIDECTALDKPCGQHAVCEN 516

Query:    78 TVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGS 137
             TVPG+NC CP+GY GKPD KVACEQVDV   CSSNF+C NNAEC++  C+C  GF+  GS
Sbjct:   517 TVPGYNCKCPQGYDGKPDPKVACEQVDVNILCSSNFDCTNNAECIENQCFCLDGFEPIGS 576

Query:   138 VCVDVDECQL-GDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCK 182
              CVD+DEC+   + CGP AQC NTPGS+ C+C  GYVG+PPR+ CK
Sbjct:   577 SCVDIDECRTHAEVCGPHAQCLNTPGSYGCECEAGYVGSPPRMACK 622

GO:0007475 "apposition of dorsal and ventral imaginal disc-derived wing surfaces" evidence=IMP

GO:0005578 "proteinaceous extracellular matrix" evidence=NAS

GO:0007424 "open tracheal system development" evidence=IMP

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008362 "chitin-based embryonic cuticle biosynthetic process" evidence=IMP

GO:0040005 "chitin-based cuticle attachment to epithelium" evidence=IMP

GO:0031012 "extracellular matrix" evidence=ISM

GO:0005201 "extracellular matrix structural constituent" evidence=ISM

GO:0046331 "lateral inhibition" evidence=IMP

ZFIN|ZDB-GENE-090112-3 fbn2b "fibrillin 2b" [Danio rerio (taxid:7955)]

 Score = 379 (138.5 bits), Expect = 3.6e-33, P = 3.6e-33
 Identities = 96/311 (30%), Positives = 145/311 (46%)

Query:    17 VDINECQSNP--CGVNATCIDTQGSYSCVCKE-HYTGDPYQACSDIDECKALDKPCGLRA 73
             +DI+EC+ +P  C    TC++T+GSY C C   H       AC D++EC+  D  C    
Sbjct:  1117 MDIDECERDPLLCR-GGTCLNTEGSYECDCPPGHQLSTEASACEDVNECQLSDNLCK-HG 1174

Query:    74 ICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECS-SNFECVNNAECVDGL--CYCRP 130
              C N V  + C C  GY   PD +  C  +D   EC+  N  C  +    +G   C C  
Sbjct:  1175 QCVNMVGTYQCSCETGYQVTPDRQ-GCVDID---ECTIMNGGCDTHCTNSEGSYECSCSE 1230

Query:   131 GFDARGSV--CVDVDECQ-LGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVR-W 186
             G+     +  C D+DEC+   D C    QCTN PG +RC C +G++ +     C DV   
Sbjct:  1231 GYALMPDLRTCADIDECEDTPDICDG-GQCTNIPGEYRCLCYDGFMASMDMRTCIDVNEC 1289

Query:   187 EFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQ 246
             + N  +       LH    +      I H         L  FV    K +    D++EC+
Sbjct:  1290 DLNPNIC------LHGDCENTKGSF-ICH-------CQLGYFV---KKGSTGCTDVDECE 1332

Query:   247 --SNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPG 304
               ++ C ++A C++  GS+ C C++ + GD  + C D+DEC   +  C   A C NT   
Sbjct:  1333 IGAHNCDLHAACVNAPGSFKCRCRDGWEGDGIK-CIDVDECVTEEHNCNPNAECLNTPGS 1391

Query:   305 FNCLCPKGYSG 315
             + C C +G++G
Sbjct:  1392 YRCSCKEGFNG 1402

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005201 "extracellular matrix structural constituent" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0003007 "heart morphogenesis" evidence=IMP

GO:0001570 "vasculogenesis" evidence=IMP

GO:0048570 "notochord morphogenesis" evidence=IGI;IMP

GO:0003160 "endocardium morphogenesis" evidence=IMP

UNIPROTKB|F1SN67 FBN1 "Fibrillin-1" [Sus scrofa (taxid:9823)]

 Score = 338 (124.0 bits), Expect = 6.3e-29, P = 6.3e-29
 Identities = 88/290 (30%), Positives = 131/290 (45%)

Query:    13 VRAIVDINECQ--SNPCGVNATCIDTQGSYSCVCKEHYTGDPYQA-CSDIDECKALDKPC 69
             + A +DINEC+  ++ C  +  C++  G Y C C   Y   P +  C DIDEC  ++  C
Sbjct:  1150 ISACIDINECELSAHLCP-HGRCVNLIGKYQCACNPGYHSTPDRLFCVDIDECSIMNGGC 1208

Query:    70 GLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAEC--VDG--L 125
                  C N+   + C C  G++  PD + +C  +D   EC  N    +  +C  + G   
Sbjct:  1209 --ETFCTNSEGSYECSCQPGFALMPDQR-SCTDID---ECEDNPNICDGGQCTNIPGEYR 1262

Query:   126 CYCRPGFDARGSV--CVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKD 183
             C C  GF A   +  CVDV+EC L         C NT GSF C C  GY G   +  C D
Sbjct:  1263 CLCYDGFMASEDMKTCVDVNECDLNPNICLSGTCENTKGSFICHCDMGYSGKKGKTGCTD 1322

Query:   184 VRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDIN 243
             +  E  +    +  D  H+V ++ +           I    +K   +++           
Sbjct:  1323 IN-ECEIGA--HNCDR-HAVCTNTAGSFKCSCSPGWI-GDGIKCTDLDECSNG------- 1370

Query:   244 ECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCG 293
                ++ C  +A C +T GSY C+CKE YTGD +  C+D+DEC      CG
Sbjct:  1371 ---THMCSQHADCKNTMGSYRCLCKEGYTGDGF-TCTDLDECSENLNLCG 1416

GO:0007507 "heart development" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005201 "extracellular matrix structural constituent" evidence=IEA

GO:0001527 "microfibril" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

UNIPROTKB|G3V9M6 Fbn1 "Fibrillin 1, isoform CRA_a" [Rattus norvegicus (taxid:10116)]

 Score = 320 (117.7 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
 Identities = 67/174 (38%), Positives = 94/174 (54%)

Query:    18 DINECQ--SNPCGVNATCIDTQGSYSCVCKEHYTGD-PYQACSDIDECKALDKPCGLRAI 74
             DI+EC+   + C  N  C++ +GSY C+CK  YT D    AC D++EC    KPC    I
Sbjct:  2403 DIDECKVIHDVCR-NGECVNDRGSYHCICKTGYTPDITGTACVDLNECNQAPKPCNF--I 2459

Query:    75 CENTVPGFNCLCPKGYSGKPDAKVACEQVD--VTSECSSNFECVNNAECVDGL-CYCRPG 131
             C+NT   + C CPKGY  + D + +C+ +D   T + +  F CVN    + G  C C PG
Sbjct:  2460 CKNTEGSYQCSCPKGYILQEDGR-SCKDLDECATKQHNCQFLCVNT---IGGFTCKCPPG 2515

Query:   132 FDARGSVCVDVDECQLG-DPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDV 184
             F    + C+D +EC    + CG +  C NTPGSF C+C  G+        C+DV
Sbjct:  2516 FTQHHTACIDNNECTSEINLCGSKGVCQNTPGSFTCECQRGFSLDQSGASCEDV 2569

GO:0001501 "skeletal system development" evidence=IEA

GO:0001527 "microfibril" evidence=IEA

GO:0005201 "extracellular matrix structural constituent" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005604 "basement membrane" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0007507 "heart development" evidence=IEA

UNIPROTKB|F1RKK1 FBN2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 323 (118.8 bits), Expect = 6.7e-42, Sum P(2) = 6.7e-42
 Identities = 70/175 (40%), Positives = 93/175 (53%)

Query:    18 DINECQSNP--CGVNATCIDTQGSYSCVCKEHYTGD-PYQACSDIDECKALDKPCGLRAI 74
             DI+EC+  P  C  N  CI+T GS+ C CK  YT D    +C D+DEC    KPC    I
Sbjct:  1969 DIDECKVMPNLC-TNGQCINTMGSFRCFCKVGYTTDISGTSCVDLDECSQSPKPCNF--I 2025

Query:    75 CENTVPGFNCLCPKGYSGKPDAKVACEQVDV--TSECSSNFECVNNAECVDGL-CYCRPG 131
             C+NT   + C CP+GY  + D K  C+ +D   T + +  F CVN    + G  C C PG
Sbjct:  2026 CKNTEGSYQCSCPRGYVLQEDGKT-CKDLDECQTKQHNCQFLCVNT---LGGFTCKCPPG 2081

Query:   132 FDARGSVCVDVDECQLGDP--CGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDV 184
             F    + C+D +EC    P  CG +  C NTPGSF C+C  G+      + C+DV
Sbjct:  2082 FTQHHTACIDNNECG-SQPSLCGAKGICQNTPGSFSCECQRGFSLDATGLNCEDV 2135

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005201 "extracellular matrix structural constituent" evidence=IEA

UNIPROTKB|I3LJJ0 FBN2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 323 (118.8 bits), Expect = 6.7e-42, Sum P(2) = 6.7e-42
 Identities = 70/175 (40%), Positives = 93/175 (53%)

Query:    18 DINECQSNP--CGVNATCIDTQGSYSCVCKEHYTGD-PYQACSDIDECKALDKPCGLRAI 74
             DI+EC+  P  C  N  CI+T GS+ C CK  YT D    +C D+DEC    KPC    I
Sbjct:  1969 DIDECKVMPNLC-TNGQCINTMGSFRCFCKVGYTTDISGTSCVDLDECSQSPKPCNF--I 2025

Query:    75 CENTVPGFNCLCPKGYSGKPDAKVACEQVDV--TSECSSNFECVNNAECVDGL-CYCRPG 131
             C+NT   + C CP+GY  + D K  C+ +D   T + +  F CVN    + G  C C PG
Sbjct:  2026 CKNTEGSYQCSCPRGYVLQEDGKT-CKDLDECQTKQHNCQFLCVNT---LGGFTCKCPPG 2081

Query:   132 FDARGSVCVDVDECQLGDP--CGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDV 184
             F    + C+D +EC    P  CG +  C NTPGSF C+C  G+      + C+DV
Sbjct:  2082 FTQHHTACIDNNECG-SQPSLCGAKGICQNTPGSFSCECQRGFSLDATGLNCEDV 2135

GO:0060346 "bone trabecula formation" evidence=IEA

GO:0045669 "positive regulation of osteoblast differentiation" evidence=IEA

GO:0035583 "sequestering of TGFbeta in extracellular matrix" evidence=IEA

GO:0030501 "positive regulation of bone mineralization" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005201 "extracellular matrix structural constituent" evidence=IEA

UNIPROTKB|P35555 FBN1 "Fibrillin-1" [Homo sapiens (taxid:9606)]

 Score = 314 (115.6 bits), Expect = 6.9e-39, Sum P(2) = 6.9e-39
 Identities = 66/174 (37%), Positives = 94/174 (54%)

Query:    18 DINECQ--SNPCGVNATCIDTQGSYSCVCKEHYTGD-PYQACSDIDECKALDKPCGLRAI 74
             DI+EC+   + C  N  C++ +GSY C+CK  YT D    +C D++EC    KPC    I
Sbjct:  2402 DIDECKVIHDVCR-NGECVNDRGSYHCICKTGYTPDITGTSCVDLNECNQAPKPCNF--I 2458

Query:    75 CENTVPGFNCLCPKGYSGKPDAKVACEQVD--VTSECSSNFECVNNAECVDGL-CYCRPG 131
             C+NT   + C CPKGY  + D + +C+ +D   T + +  F CVN    + G  C C PG
Sbjct:  2459 CKNTEGSYQCSCPKGYILQEDGR-SCKDLDECATKQHNCQFLCVNT---IGGFTCKCPPG 2514

Query:   132 FDARGSVCVDVDECQLG-DPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDV 184
             F    + C+D +EC    + CG +  C NTPGSF C+C  G+        C+DV
Sbjct:  2515 FTQHHTSCIDNNECTSDINLCGSKGICQNTPGSFTCECQRGFSLDQTGSSCEDV 2568

GO:0001501 "skeletal system development" evidence=IMP

GO:0005578 "proteinaceous extracellular matrix" evidence=IDA

GO:0001527 "microfibril" evidence=IDA

GO:0005201 "extracellular matrix structural constituent" evidence=IDA

GO:0005615 "extracellular space" evidence=IDA

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005604 "basement membrane" evidence=IDA

GO:0007507 "heart development" evidence=IMP

GO:0005576 "extracellular region" evidence=TAS

GO:0031012 "extracellular matrix" evidence=IDA

GO:0035582 "sequestering of BMP in extracellular matrix" evidence=ISS

GO:0035583 "sequestering of TGFbeta in extracellular matrix" evidence=ISS

UNIPROTKB|P35556 FBN2 "Fibrillin-2" [Homo sapiens (taxid:9606)]

 Score = 353 (129.3 bits), Expect = 2.1e-30, P = 2.1e-30
 Identities = 89/278 (32%), Positives = 129/278 (46%)

Query:    17 VDINECQ--SNPCGVNATCIDTQGSYSCVCKEHYTGDP-YQACSDIDECKALDKPCGLRA 73
             VDINEC    N C  N  C++  G+Y C C   Y   P  Q C+DIDEC  ++  C  + 
Sbjct:  1199 VDINECSLSDNLCR-NGKCVNMIGTYQCSCNPGYQATPDRQGCTDIDECMIMNGGCDTQ- 1256

Query:    74 ICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAEC--VDG--LCYCR 129
              C N+   + C C +GY+  PD + +C  +D   EC +N +  +  +C  + G   C C 
Sbjct:  1257 -CTNSEGSYECSCSEGYALMPDGR-SCADID---ECENNPDICDGGQCTNIPGEYRCLCY 1311

Query:   130 PGFDARGSV--CVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWE 187
              GF A   +  C+DV+EC L        +C NT GSF C C  GY        C DV  E
Sbjct:  1312 DGFMASMDMKTCIDVNECDLNSNICMFGECENTKGSFICHCQLGYSVKKGTTGCTDVD-E 1370

Query:   188 FNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQS 247
               +    +  D +H+   +I            I    +K   +++     ++        
Sbjct:  1371 CEIGA--HNCD-MHASCLNIPGSFKCSCREGWI-GNGIKCIDLDECSNGTHQ-------- 1418

Query:   248 NPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDEC 285
               C +NA C++T GSY C C E +TGD +  CSD+DEC
Sbjct:  1419 --CSINAQCVNTPGSYRCACSEGFTGDGF-TCSDVDEC 1453

GO:0005201 "extracellular matrix structural constituent" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=TAS

GO:0009653 "anatomical structure morphogenesis" evidence=TAS

GO:0030501 "positive regulation of bone mineralization" evidence=ISS

GO:0035583 "sequestering of TGFbeta in extracellular matrix" evidence=ISS

GO:0045669 "positive regulation of osteoblast differentiation" evidence=ISS

GO:0060346 "bone trabecula formation" evidence=ISS

GO:0001527 "microfibril" evidence=TAS

UNIPROTKB|E2RS46 FBN2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 322 (118.4 bits), Expect = 1.3e-41, Sum P(2) = 1.3e-41
 Identities = 70/175 (40%), Positives = 94/175 (53%)

Query:    18 DINECQSNP--CGVNATCIDTQGSYSCVCKEHYTGD-PYQACSDIDECKALDKPCGLRAI 74
             DI+EC+  P  C  +  CI+T GS+ C CK  YT D    +C D+DEC    KPC    I
Sbjct:  2458 DIDECKVMPNLC-TSGQCINTMGSFRCFCKVGYTTDISGTSCVDLDECSQSPKPCNF--I 2514

Query:    75 CENTVPGFNCLCPKGYSGKPDAKVACEQVDV--TSECSSNFECVNNAECVDGL-CYCRPG 131
             C+NT   + C CP+GY  + DAK  C+ +D   T + +  F CVN    + G  C C PG
Sbjct:  2515 CKNTEGSYQCSCPRGYVLQEDAKT-CKDLDECQTKQHNCQFLCVNT---LGGFTCKCPPG 2570

Query:   132 FDARGSVCVDVDECQLGDP--CGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDV 184
             F    + C+D +EC    P  CG +  C NTPGSF C+C  G+      + C+DV
Sbjct:  2571 FTQHHTACIDNNECG-SQPSLCGAKGICQNTPGSFSCECQRGFSLDATGLNCEDV 2624

GO:0060346 "bone trabecula formation" evidence=IEA

GO:0045669 "positive regulation of osteoblast differentiation" evidence=IEA

GO:0035583 "sequestering of TGFbeta in extracellular matrix" evidence=IEA

GO:0030501 "positive regulation of bone mineralization" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005201 "extracellular matrix structural constituent" evidence=IEA

UNIPROTKB|F1NII7 FBN1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 339 (124.4 bits), Expect = 6.2e-29, P = 6.2e-29
 Identities = 90/283 (31%), Positives = 127/283 (44%)

Query:    13 VRAIVDINECQ--SNPCGVNATCIDTQGSYSCVCKEHY--TGDPYQACSDIDECKALDKP 68
             + A +DINEC   +N C  N  C++  G Y C C   Y  T D    C DIDEC  ++  
Sbjct:  1093 ISACIDINECDLSTNLCR-NGHCVNLIGKYQCACNPGYQSTADKLH-CIDIDECSIMNGG 1150

Query:    69 CGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAEC--VDG-- 124
             C     C N+   + C C +G++  PD +  C  +D   EC  N    +  +C  + G  
Sbjct:  1151 C--ENFCTNSEGSYECSCKQGFALMPDHRT-CTDID---ECEDNPNICDGGQCTNIPGEY 1204

Query:   125 LCYCRPGFDARGSV--CVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCK 182
              C C  GF A   +  CVDV+EC L         C NT GSF C C  GY G      C 
Sbjct:  1205 RCLCYDGFMASEDMKTCVDVNECDLHPNICLSGTCENTKGSFICHCDMGYSGKKGTTGCT 1264

Query:   183 DVRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDI 242
             D+  E  +    +  D  H+V ++I            I    +K   +++     ++   
Sbjct:  1265 DIN-ECEIGA--HNCDR-HAVCTNIPGSFKCSCSSGWI-GNGIKCTDLDECSNGTHK--- 1316

Query:   243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDEC 285
                    C  +A C +T GSY C+CKE YTGD +  C+D+DEC
Sbjct:  1317 -------CSPHADCKNTMGSYRCLCKEGYTGDGF-TCTDLDEC 1351

GO:0005201 "extracellular matrix structural constituent" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0006030 "chitin metabolic process" evidence=IEA

GO:0008061 "chitin binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	332
cd00054	38	cd00054, EGF_CA, Calcium-binding EGF-like domain,	2e-08
smart00179	39	smart00179, EGF_CA, Calcium-binding EGF-like domai	4e-08
cd00054	38	cd00054, EGF_CA, Calcium-binding EGF-like domain,	6e-07
cd00054	38	cd00054, EGF_CA, Calcium-binding EGF-like domain,	6e-07
smart00179	39	smart00179, EGF_CA, Calcium-binding EGF-like domai	1e-05
smart00179	39	smart00179, EGF_CA, Calcium-binding EGF-like domai	1e-05
cd00053	36	cd00053, EGF, Epidermal growth factor domain, foun	3e-05
cd00054	38	cd00054, EGF_CA, Calcium-binding EGF-like domain,	4e-05
cd00054	38	cd00054, EGF_CA, Calcium-binding EGF-like domain,	4e-05
smart00179	39	smart00179, EGF_CA, Calcium-binding EGF-like domai	2e-04
smart00179	39	smart00179, EGF_CA, Calcium-binding EGF-like domai	2e-04
pfam12947	36	pfam12947, EGF_3, EGF domain	3e-04
pfam12947	36	pfam12947, EGF_3, EGF domain	3e-04
pfam12947	36	pfam12947, EGF_3, EGF domain	4e-04
cd00053	36	cd00053, EGF, Epidermal growth factor domain, foun	6e-04
cd00053	36	cd00053, EGF, Epidermal growth factor domain, foun	6e-04
pfam07645	42	pfam07645, EGF_CA, Calcium-binding EGF domain	0.001
pfam07645	42	pfam07645, EGF_CA, Calcium-binding EGF domain	0.001
pfam07645	42	pfam07645, EGF_CA, Calcium-binding EGF domain	0.001

>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

 Score = 49.2 bits (118), Expect = 2e-08
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 141 DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
           D+DEC  G+PC     C NT GS+RC C  GY G
Sbjct: 1   DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTG 34

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. Length = 38

>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain

 Score = 48.4 bits (116), Expect = 4e-08
 Identities = 17/32 (53%), Positives = 21/32 (65%)

Query: 141 DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGY 172
           D+DEC  G+PC     C NT GS+RC+C  GY
Sbjct: 1   DIDECASGNPCQNGGTCVNTVGSYRCECPPGY 32

Length = 39

>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

 Score = 44.9 bits (107), Expect = 6e-07
 Identities = 19/35 (54%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 18 DINECQS-NPCGVNATCIDTQGSYSCVCKEHYTGD 51
          DI+EC S NPC    TC++T GSY C C   YTG 
Sbjct: 1  DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGR 35

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. Length = 38

>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

 Score = 44.9 bits (107), Expect = 6e-07
 Identities = 19/35 (54%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 241 DINECQS-NPCGVNATCIDTQGSYSCVCKEHYTGD 274
           DI+EC S NPC    TC++T GSY C C   YTG 
Sbjct: 1   DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGR 35

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. Length = 38

>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 18 DINECQS-NPCGVNATCIDTQGSYSCVCKEHYT 49
          DI+EC S NPC    TC++T GSY C C   YT
Sbjct: 1  DIDECASGNPCQNGGTCVNTVGSYRCECPPGYT 33

Length = 39

>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 241 DINECQS-NPCGVNATCIDTQGSYSCVCKEHYT 272
           DI+EC S NPC    TC++T GSY C C   YT
Sbjct: 1   DIDECASGNPCQNGGTCVNTVGSYRCECPPGYT 33

Length = 39

>gnl|CDD|238010 cd00053, EGF, Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 16/31 (51%), Positives = 18/31 (58%)

Query: 144 ECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
           EC   +PC     C NTPGS+RC C  GY G
Sbjct: 1   ECAASNPCSNGGTCVNTPGSYRCVCPPGYTG 31

Length = 36

>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

 Score = 39.9 bits (94), Expect = 4e-05
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 58 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGK 93
          DIDEC A   PC     C NTV  + C CP GY+G+
Sbjct: 1  DIDEC-ASGNPCQNGGTCVNTVGSYRCSCPPGYTGR 35

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. Length = 38

>gnl|CDD|238011 cd00054, EGF_CA, Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

 Score = 39.9 bits (94), Expect = 4e-05
 Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 281 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGK 316
           DIDEC A   PC     C NTV  + C CP GY+G+
Sbjct: 1   DIDEC-ASGNPCQNGGTCVNTVGSYRCSCPPGYTGR 35

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements. Length = 38

>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 58 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYS 91
          DIDEC A   PC     C NTV  + C CP GY+
Sbjct: 1  DIDEC-ASGNPCQNGGTCVNTVGSYRCECPPGYT 33

Length = 39

>gnl|CDD|214542 smart00179, EGF_CA, Calcium-binding EGF-like domain

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 281 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYS 314
           DIDEC A   PC     C NTV  + C CP GY+
Sbjct: 1   DIDEC-ASGNPCQNGGTCVNTVGSYRCECPPGYT 33

Length = 39

>gnl|CDD|205157 pfam12947, EGF_3, EGF domain

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 22 CQSNP--CGVNATCIDTQGSYSCVCKEHYTGD 51
          C  N   C  NATC +T GS++C CK  YTGD
Sbjct: 1  CAENNGGCHPNATCTNTGGSFTCTCKSGYTGD 32

This family includes a variety of EGF-like domain homologues. This family includes the C-terminal domain of the malaria parasite MSP1 protein. Length = 36

>gnl|CDD|205157 pfam12947, EGF_3, EGF domain

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 245 CQSNP--CGVNATCIDTQGSYSCVCKEHYTGD 274
           C  N   C  NATC +T GS++C CK  YTGD
Sbjct: 1   CAENNGGCHPNATCTNTGGSFTCTCKSGYTGD 32

This family includes a variety of EGF-like domain homologues. This family includes the C-terminal domain of the malaria parasite MSP1 protein. Length = 36

>gnl|CDD|205157 pfam12947, EGF_3, EGF domain

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 15/26 (57%), Positives = 15/26 (57%)

Query: 149 DPCGPQAQCTNTPGSFRCDCVEGYVG 174
             C P A CTNT GSF C C  GY G
Sbjct: 6   GGCHPNATCTNTGGSFTCTCKSGYTG 31

This family includes a variety of EGF-like domain homologues. This family includes the C-terminal domain of the malaria parasite MSP1 protein. Length = 36

>gnl|CDD|238010 cd00053, EGF, Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

 Score = 36.7 bits (85), Expect = 6e-04
 Identities = 19/34 (55%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 21 ECQ-SNPCGVNATCIDTQGSYSCVCKEHYTGDPY 53
          EC  SNPC    TC++T GSY CVC   YTGD  
Sbjct: 1  ECAASNPCSNGGTCVNTPGSYRCVCPPGYTGDRS 34

Length = 36

>gnl|CDD|238010 cd00053, EGF, Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

 Score = 36.7 bits (85), Expect = 6e-04
 Identities = 19/34 (55%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 244 ECQ-SNPCGVNATCIDTQGSYSCVCKEHYTGDPY 276
           EC  SNPC    TC++T GSY CVC   YTGD  
Sbjct: 1   ECAASNPCSNGGTCVNTPGSYRCVCPPGYTGDRS 34

Length = 36

>gnl|CDD|219496 pfam07645, EGF_CA, Calcium-binding EGF domain

 Score = 36.2 bits (84), Expect = 0.001
 Identities = 15/41 (36%), Positives = 19/41 (46%)

Query: 58 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKV 98
          D+DEC      C    +C NT+  F C+CP GY    D   
Sbjct: 1  DVDECADGTHNCPANTVCVNTIGSFECVCPDGYENNEDGTN 41

Length = 42

>gnl|CDD|219496 pfam07645, EGF_CA, Calcium-binding EGF domain

 Score = 36.2 bits (84), Expect = 0.001
 Identities = 15/41 (36%), Positives = 19/41 (46%)

Query: 281 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKV 321
           D+DEC      C    +C NT+  F C+CP GY    D   
Sbjct: 1   DVDECADGTHNCPANTVCVNTIGSFECVCPDGYENNEDGTN 41

Length = 42

>gnl|CDD|219496 pfam07645, EGF_CA, Calcium-binding EGF domain

 Score = 35.8 bits (83), Expect = 0.001
 Identities = 17/42 (40%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 141 DVDEC-QLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKC 181
           DVDEC      C     C NT GSF C C +GY        C
Sbjct: 1   DVDECADGTHNCPANTVCVNTIGSFECVCPDGYENNEDGTNC 42

Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	332
KOG1214|consensus	1289		99.62
KOG1214|consensus	1289		99.56
KOG1217|consensus	487		99.53
KOG1217|consensus	487		99.38
KOG1219|consensus	4289		99.37
KOG1219|consensus	4289		99.2
KOG1225|consensus	525		99.1
KOG1225|consensus	525		99.07
KOG4260|consensus	350		98.95
KOG4289|consensus	2531		98.93
KOG4289|consensus	2531		98.92
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	98.79
KOG4260|consensus	350		98.74
KOG0994|consensus	1758		98.74
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	98.25
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	98.14
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	98.02
smart00179	39	EGF_CA Calcium-binding EGF-like domain.	97.99
PF00008	32	EGF: EGF-like domain This is a sub-family of the P	97.97
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	97.91
KOG1226|consensus	783		97.89
PF12662	24	cEGF: Complement Clr-like EGF-like	97.86
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	97.65
PF12662	24	cEGF: Complement Clr-like EGF-like	97.65
KOG1836|consensus	1705		97.64
cd00054	38	EGF_CA Calcium-binding EGF-like domain, present in	97.58
KOG1226|consensus	783		97.54
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	97.5
PF12947	36	EGF_3: EGF domain; InterPro: IPR024731 This entry	97.43
KOG0994|consensus	1758		97.37
PF06247	197	Plasmod_Pvs28: Plasmodium ookinete surface protein	97.23
cd00053	36	EGF Epidermal growth factor domain, found in epide	97.17
cd00053	36	EGF Epidermal growth factor domain, found in epide	97.11
PF06247	197	Plasmod_Pvs28: Plasmodium ookinete surface protein	97.05
smart00181	35	EGF Epidermal growth factor-like domain.	97.0
smart00181	35	EGF Epidermal growth factor-like domain.	96.94
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	96.47
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	96.16
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	96.1
PF12661	13	hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E	96.09
PF07974	32	EGF_2: EGF-like domain; InterPro: IPR013111 A sequ	95.99
KOG1836|consensus	1705		94.33
PF12946	37	EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730	94.1
PF12946	37	EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730	93.06
cd01475	224	vWA_Matrilin VWA_Matrilin: In cartilaginous plate,	93.02
KOG1218|consensus	316		91.19
smart00051	63	DSL delta serrate ligand.	90.94
smart00051	63	DSL delta serrate ligand.	90.06
KOG1218|consensus	316		90.04
PF01683	52	EB: EB module; InterPro: IPR006149 The EB domain h	83.56
PF00053	49	Laminin_EGF: Laminin EGF-like (Domains III and V);	83.32
PF00954	110	S_locus_glycop: S-locus glycoprotein family; Inter	81.26
cd00055	50	EGF_Lam Laminin-type epidermal growth factor-like	80.12

>KOG1214|consensus

Probab=99.62  E-value=9.9e-15  Score=133.97  Aligned_cols=199  Identities=28%  Similarity=0.676  Sum_probs=137.9

Q ss_pred             CCCCCeeeeCCC-CeEeeCCCCCccCCCCCCCCcccccCCCCCCCCCCceeeCCCCeeeeCCCCCCCCCCCccceeeccC
Q psy2857          27 CGVNATCIDTQG-SYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDV  105 (332)
Q Consensus        27 C~~~g~C~~~~g-~~~C~C~~G~~g~~~~~C~~~~~c~~~~~~C~~~~~C~~~~~~~~C~C~~g~~~~~~~~~~c~~~~~  105 (332)
                      |..++.|....+ .|.|.|..||.|+. +.|.++++|+...+.|++++.|++..+.|+|.|..||......- .|..+..
T Consensus       702 cdt~a~C~pg~~~~~tcecs~g~~gdg-r~c~d~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy~F~dd~~-tCV~i~~  779 (1289)
T KOG1214|consen  702 CDTTARCHPGTGVDYTCECSSGYQGDG-RNCVDENECATGFHRCGPNSVCINLPGSYRCECRSGYEFADDRH-TCVLITP  779 (1289)
T ss_pred             cCCCccccCCCCcceEEEEeeccCCCC-CCCCChhhhccCCCCCCCCceeecCCCceeEEEeecceeccCCc-ceEEecC
Confidence            666677887744 79999999999987 67999999999889999999999999999999999987654322 3432210


Q ss_pred             CCCCCCCccccCCCcccCceecCCCCccCCCCeeecCCCCCCCCCCCCC--CceecC-CCceEeeCCCCCccCCCCcccc
Q psy2857         106 TSECSSNFECVNNAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQ--AQCTNT-PGSFRCDCVEGYVGAPPRIKCK  182 (332)
Q Consensus       106 ~~~c~~~~~C~~~~~c~~~~c~C~~g~~~~g~~c~~~~~C~~~~~C~~~--~~C~~~-~~~~~C~C~~G~~g~~~~~~c~  182 (332)
                        . .+                        ...|.+.     .+.|...  .+|+.. .++|.|.|.+||.|+.      
T Consensus       780 --p-ap------------------------~n~Ce~g-----~h~C~i~g~a~c~~hGgs~y~C~CLPGfsGDG------  821 (1289)
T KOG1214|consen  780 --P-AP------------------------ANPCEDG-----SHTCAIAGQARCVHHGGSTYSCACLPGFSGDG------  821 (1289)
T ss_pred             --C-CC------------------------CCccccC-----ccccCcCCceEEEecCCceEEEeecCCccCCc------
Confidence              0 00                        1223221     1333333  345544 4679999999999862      


Q ss_pred             ccCcccceeeccccCcccccccCCcccccceecccccceecccccEEecccCccccccccCccCCCCCCCCCeeeecCCc
Q psy2857         183 DVRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATCIDTQGS  262 (332)
Q Consensus       183 ~~~c~~~~~c~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~C~~~~C~~~~~C~~~~~~  262 (332)
                                                                            ..+.++|+|.++-|..++.|++++++
T Consensus       822 ------------------------------------------------------~~c~dvDeC~psrChp~A~Cyntpgs  847 (1289)
T KOG1214|consen  822 ------------------------------------------------------HQCTDVDECSPSRCHPAATCYNTPGS  847 (1289)
T ss_pred             ------------------------------------------------------cccccccccCccccCCCceEecCCCc
Confidence                                                                  13456799999999999999999999


Q ss_pred             eeeecCCCcccCCCCcccc----cccccCC---CCCCCCCC-eee-cCCCceeeeCCCCCCCCCCCC
Q psy2857         263 YSCVCKEHYTGDPYQACSD----IDECKAL---DKPCGLRA-ICE-NTVPGFNCLCPKGYSGKPDAK  320 (332)
Q Consensus       263 ~~C~C~~G~~g~~~~~C~~----~d~C~~~---~~~C~~~~-~C~-~~~g~~~C~C~~g~~g~~~~~  320 (332)
                      |.|+|.+||.|++.. |..    .-.|...   +-.|..+. .|. ..+.+|.|.|.++-.|+...+
T Consensus       848 fsC~C~pGy~GDGf~-CVP~~~~~T~C~~er~hpl~chg~t~~~~~~Dp~~~e~p~~~~ppG~~~~~  913 (1289)
T KOG1214|consen  848 FSCRCQPGYYGDGFQ-CVPDTSSLTPCEQERFHPLQCHGSTGFCWCVDPDGHEVPGTQTPPGSTPPH  913 (1289)
T ss_pred             ceeecccCccCCCce-ecCCCccCCccccccccceeeccccceeEeeCCCcccCCCCCCCCCCCCCC
Confidence            999999999999754 332    1223222   23354332 222 234567888888777766554

>KOG1214|consensus

Probab=99.56  E-value=2.3e-14  Score=131.58  Aligned_cols=140  Identities=38%  Similarity=0.868  Sum_probs=109.0

Q ss_pred             CceecCCCCccCCCCeeecCCCCC-CCCCCCCCCceecCCCceEeeCCCCCccCCCCccccccCcccceeeccccCcccc
Q psy2857         123 DGLCYCRPGFDARGSVCVDVDECQ-LGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYETDYLH  201 (332)
Q Consensus       123 ~~~c~C~~g~~~~g~~c~~~~~C~-~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~~c~~~~c~~~~~c~~~~~~~~~  201 (332)
                      .+.|.|..||.+.++.|.+.++|+ ....|.++.+|++.+++|+|.|..||.......+|..+.-               
T Consensus       715 ~~tcecs~g~~gdgr~c~d~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy~F~dd~~tCV~i~~---------------  779 (1289)
T KOG1214|consen  715 DYTCECSSGYQGDGRNCVDENECATGFHRCGPNSVCINLPGSYRCECRSGYEFADDRHTCVLITP---------------  779 (1289)
T ss_pred             ceEEEEeeccCCCCCCCCChhhhccCCCCCCCCceeecCCCceeEEEeecceeccCCcceEEecC---------------
Confidence            458999999999999999999998 3467999999999999999999999987665544433210               


Q ss_pred             cccCCcccccceecccccceecccccEEecccCccccccccCccCC--CCCCCCC--eeeecC-CceeeecCCCcccCCC
Q psy2857         202 SVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQS--NPCGVNA--TCIDTQ-GSYSCVCKEHYTGDPY  276 (332)
Q Consensus       202 ~~~~~~~~~~c~c~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~C~~--~~C~~~~--~C~~~~-~~~~C~C~~G~~g~~~  276 (332)
                                                    .       ..++.|+.  +.|..++  .|+... ++|.|+|.+||.|++.
T Consensus       780 ------------------------------p-------ap~n~Ce~g~h~C~i~g~a~c~~hGgs~y~C~CLPGfsGDG~  822 (1289)
T KOG1214|consen  780 ------------------------------P-------APANPCEDGSHTCAIAGQARCVHHGGSTYSCACLPGFSGDGH  822 (1289)
T ss_pred             ------------------------------C-------CCCCccccCccccCcCCceEEEecCCceEEEeecCCccCCcc
Confidence                                          0       01122322  2343333  455544 4799999999999986


Q ss_pred             CcccccccccCCCCCCCCCCeeecCCCceeeeCCCCCCCCC
Q psy2857         277 QACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKP  317 (332)
Q Consensus       277 ~~C~~~d~C~~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~  317 (332)
                      . |.|+|+|.  +..|.++++|+|++++|.|+|.+||.|+.
T Consensus       823 ~-c~dvDeC~--psrChp~A~CyntpgsfsC~C~pGy~GDG  860 (1289)
T KOG1214|consen  823 Q-CTDVDECS--PSRCHPAATCYNTPGSFSCRCQPGYYGDG  860 (1289)
T ss_pred             c-cccccccC--ccccCCCceEecCCCcceeecccCccCCC
Confidence            4 88999997  47899999999999999999999999985

>KOG1217|consensus

Probab=99.53  E-value=5.7e-13  Score=124.36  Aligned_cols=270  Identities=32%  Similarity=0.707  Sum_probs=186.9

Q ss_pred             EEEEecCCceecccCC--cCCCCC--CCCCCeeeeC---CCCeEeeCCCCCccCCCCCCCCcccccCCCCCCCCCCceee
Q psy2857           5 VLVRILLGVRAIVDIN--ECQSNP--CGVNATCIDT---QGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICEN   77 (332)
Q Consensus         5 ~~c~c~~g~~~~~~~~--~C~~~~--C~~~g~C~~~---~g~~~C~C~~G~~g~~~~~C~~~~~c~~~~~~C~~~~~C~~   77 (332)
                      ..|.|..||.+..+..  .|...+  +..++.|.+.   ...|.|.|..||.+..+..  ..++|.....+|.+.+.|.+
T Consensus       110 ~~c~c~~g~~~~~~~~~~~C~~~~~~~~~~~~c~~~~~~~~~~~c~C~~g~~~~~~~~--~~~~C~~~~~~c~~~~~C~~  187 (487)
T KOG1217|consen  110 YECTCPPGYQGTPCEGECECVTGPGVCCIDGSCSNGPGSVGPFRCSCTEGYEGEPCET--DLDECIQYSSPCQNGGTCVN  187 (487)
T ss_pred             ceeeCCCccccCcCCcceeecCCCCCeeCchhhcCCCCCCCceeeeeCCCcccccccc--cccccccCCCCcCCCccccc
Confidence            4578999999986655  477766  3556778774   3589999999999976642  22677655667999999999


Q ss_pred             CCCCeeeeCCCCCCCCCCCccceeeccCCCCCCCCccccCCCcccC-ceecCCCCccCCCCee-ecCCCCCCCCCCCCCC
Q psy2857          78 TVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVD-GLCYCRPGFDARGSVC-VDVDECQLGDPCGPQA  155 (332)
Q Consensus        78 ~~~~~~C~C~~g~~~~~~~~~~c~~~~~~~~c~~~~~C~~~~~c~~-~~c~C~~g~~~~g~~c-~~~~~C~~~~~C~~~~  155 (332)
                      ..++|.|.|..+|.+......                 .+...|.. ..+.+.++|.  +..| .++.++...    . +
T Consensus       188 ~~~~~~C~c~~~~~~~~~~~~-----------------~~~~~c~~~~~~~~~~g~~--~~~c~~~~~~~~~~----~-~  243 (487)
T KOG1217|consen  188 TGGSYLCSCPPGYTGSTCETT-----------------GNGGTCVDSVACSCPPGAR--GPECEVSIVECASG----D-G  243 (487)
T ss_pred             CCCCeeEeCCCCccCCcCcCC-----------------CCCceEecceeccCCCCCC--CCCcccccccccCC----C-C
Confidence            999999999999998743321                 11122222 3567777776  4444 334444311    4 8


Q ss_pred             ceecCCCceEeeCCCCCccCC-----CCccccccC-cccceeeccccCcccccccCCcccccceecccccceecccccEE
Q psy2857         156 QCTNTPGSFRCDCVEGYVGAP-----PRIKCKDVR-WEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFV  229 (332)
Q Consensus       156 ~C~~~~~~~~C~C~~G~~g~~-----~~~~c~~~~-c~~~~~c~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~~~g~~  229 (332)
                      +|++..+.+.|.|++||.+..     ....|.... |.++..|.....           .+.|.|..          +|+
T Consensus       244 ~c~~~~~~~~C~~~~g~~~~~~~~~~~~~~C~~~~~c~~~~~C~~~~~-----------~~~C~C~~----------g~~  302 (487)
T KOG1217|consen  244 TCVNTVGSYTCRCPEGYTGDACVTCVDVDSCALIASCPNGGTCVNVPG-----------SYRCTCPP----------GFT  302 (487)
T ss_pred             cccccCCceeeeCCCCccccccceeeeccccCCCCccCCCCeeecCCC-----------cceeeCCC----------CCC
Confidence            899999999999999999987     234555543 666666653222           26777777          888


Q ss_pred             ecccCccccccccCcc----CCCCCCCCCee--eecCCceeeecCCCcccCCCCccccc-ccccCCCCCCCCCCeeec-C
Q psy2857         230 IEDAKRNLNRVDINEC----QSNPCGVNATC--IDTQGSYSCVCKEHYTGDPYQACSDI-DECKALDKPCGLRAICEN-T  301 (332)
Q Consensus       230 ~~~~~~~~~~~~~~~C----~~~~C~~~~~C--~~~~~~~~C~C~~G~~g~~~~~C~~~-d~C~~~~~~C~~~~~C~~-~  301 (332)
                      +..+   ..+.+..+|    ...+|.+++.|  .+..+.+.|.|..||.|..+   ++. ++|..  .++..++.|++ .
T Consensus       303 g~~~---~~~~~~~~C~~~~~~~~c~~g~~C~~~~~~~~~~C~c~~~~~g~~C---~~~~~~C~~--~~~~~~~~c~~~~  374 (487)
T KOG1217|consen  303 GRLC---TECVDVDECSPRNAGGPCANGGTCNTLGSFGGFRCACGPGFTGRRC---EDSNDECAS--SPCCPGGTCVNET  374 (487)
T ss_pred             CCCC---ccccccccccccccCCcCCCCcccccCCCCCCCCcCCCCCCCCCcc---ccCCccccC--CccccCCEeccCC
Confidence            7766   234455677    34668887788  34445788999999888754   455 48876  34778899999 7


Q ss_pred             CCceeeeCCCCCCCC-CCCCccccccccC
Q psy2857         302 VPGFNCLCPKGYSGK-PDAKVACEQEKAG  329 (332)
Q Consensus       302 ~g~~~C~C~~g~~g~-~~~~~~c~~~~~~  329 (332)
                      .++|.|.|+.+|.+. ......+..+.+.
T Consensus       375 ~~~~~c~~~~~~~~~~~~~~~~~~~~~~c  403 (487)
T KOG1217|consen  375 PGSYRCACPAGFAGKANGDGVGCEDIDEC  403 (487)
T ss_pred             CCCeEecCCCccccCCccccccccccccc
Confidence            899999999999984 2222345555443

>KOG1217|consensus

Probab=99.38  E-value=3.3e-11  Score=112.47  Aligned_cols=262  Identities=31%  Similarity=0.619  Sum_probs=171.7

Q ss_pred             EEEEEecCCceecccC---CcCCC--CCCCCCCeeeeCCCCeEeeCCCCCccCCCCCCCCcccccCCCCCCCCCCceeeC
Q psy2857           4 VVLVRILLGVRAIVDI---NECQS--NPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENT   78 (332)
Q Consensus         4 ~~~c~c~~g~~~~~~~---~~C~~--~~C~~~g~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~c~~~~~~C~~~~~C~~~   78 (332)
                      ...|.|..||.+....   ++|..  .+|.+.+.|.+..++|.|.|.+||.+..+..-             ...+.|++.
T Consensus       151 ~~~c~C~~g~~~~~~~~~~~~C~~~~~~c~~~~~C~~~~~~~~C~c~~~~~~~~~~~~-------------~~~~~c~~~  217 (487)
T KOG1217|consen  151 PFRCSCTEGYEGEPCETDLDECIQYSSPCQNGGTCVNTGGSYLCSCPPGYTGSTCETT-------------GNGGTCVDS  217 (487)
T ss_pred             ceeeeeCCCcccccccccccccccCCCCcCCCcccccCCCCeeEeCCCCccCCcCcCC-------------CCCceEecc
Confidence            4678999999999432   68874  34998999999999999999999999765311             223455444


Q ss_pred             CCCeeeeCCCCCCCCCCCccceeeccCCCCCCCC-ccccCCCcccCceecCCCCccCCC-CeeecCCCCCCCCCCCCCCc
Q psy2857          79 VPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSN-FECVNNAECVDGLCYCRPGFDARG-SVCVDVDECQLGDPCGPQAQ  156 (332)
Q Consensus        79 ~~~~~C~C~~g~~~~~~~~~~c~~~~~~~~c~~~-~~C~~~~~c~~~~c~C~~g~~~~g-~~c~~~~~C~~~~~C~~~~~  156 (332)
                         +.|.+..++.+........       .+... ..|.+...  .+.|.+++||.+.. ..+.++++|.....|.++++
T Consensus       218 ---~~~~~~~g~~~~~c~~~~~-------~~~~~~~~c~~~~~--~~~C~~~~g~~~~~~~~~~~~~~C~~~~~c~~~~~  285 (487)
T KOG1217|consen  218 ---VACSCPPGARGPECEVSIV-------ECASGDGTCVNTVG--SYTCRCPEGYTGDACVTCVDVDSCALIASCPNGGT  285 (487)
T ss_pred             ---eeccCCCCCCCCCcccccc-------cccCCCCcccccCC--ceeeeCCCCccccccceeeeccccCCCCccCCCCe
Confidence               5778888887653321100       11111 12222111  25888999998655 46778888974324888999


Q ss_pred             eecCCCceEeeCCCCCccCCCCccccc-cC---------cccceeeccccCcccccccCCcccccceecccccceecccc
Q psy2857         157 CTNTPGSFRCDCVEGYVGAPPRIKCKD-VR---------WEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLK  226 (332)
Q Consensus       157 C~~~~~~~~C~C~~G~~g~~~~~~c~~-~~---------c~~~~~c~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~~~  226 (332)
                      |++..+.|.|.|++||.+..+ ..+.+ ..         |.++..|.         .......+.|.+..          
T Consensus       286 C~~~~~~~~C~C~~g~~g~~~-~~~~~~~~C~~~~~~~~c~~g~~C~---------~~~~~~~~~C~c~~----------  345 (487)
T KOG1217|consen  286 CVNVPGSYRCTCPPGFTGRLC-TECVDVDECSPRNAGGPCANGGTCN---------TLGSFGGFRCACGP----------  345 (487)
T ss_pred             eecCCCcceeeCCCCCCCCCC-ccccccccccccccCCcCCCCcccc---------cCCCCCCCCcCCCC----------
Confidence            999998899999999999876 22222 11         33333331         00111234455554          


Q ss_pred             cEEecccCcccccccc-CccCCCCCCCCCeeee-cCCceeeecCCCcccC---CCCcccccccccCCCCCCCCCCeeecC
Q psy2857         227 LFVIEDAKRNLNRVDI-NECQSNPCGVNATCID-TQGSYSCVCKEHYTGD---PYQACSDIDECKALDKPCGLRAICENT  301 (332)
Q Consensus       227 g~~~~~~~~~~~~~~~-~~C~~~~C~~~~~C~~-~~~~~~C~C~~G~~g~---~~~~C~~~d~C~~~~~~C~~~~~C~~~  301 (332)
                      +|++.      .+... ++|...++..++.|++ ..++|.|.|+.+|.+.   ....+.++++|..       .+.|++.
T Consensus       346 ~~~g~------~C~~~~~~C~~~~~~~~~~c~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~c~~-------~~~c~~~  412 (487)
T KOG1217|consen  346 GFTGR------RCEDSNDECASSPCCPGGTCVNETPGSYRCACPAGFAGKANGDGVGCEDIDECSG-------CGDCVNG  412 (487)
T ss_pred             CCCCC------ccccCCccccCCccccCCEeccCCCCCeEecCCCccccCCccccccccccccccC-------Ccceecc
Confidence            44433      23334 4888888889999999 7899999999999984   2345777888754       4578888


Q ss_pred             CCceeeeCCCCCCCCCCCCcccccccc
Q psy2857         302 VPGFNCLCPKGYSGKPDAKVACEQEKA  328 (332)
Q Consensus       302 ~g~~~C~C~~g~~g~~~~~~~c~~~~~  328 (332)
                      .++|.|. ++ + .....  .|.++.+
T Consensus       413 ~~~~~c~-~~-~-~~~~~--~~~~~~~  434 (487)
T KOG1217|consen  413 PGGGACT-PP-G-LVSPG--TCDDIDE  434 (487)
T ss_pred             CCCCccc-cC-c-ccCCc--ceecccc
Confidence            9999999 77 4 33222  4555444

>KOG1219|consensus

Probab=99.37  E-value=1.1e-12  Score=130.89  Aligned_cols=111  Identities=34%  Similarity=0.844  Sum_probs=92.8

Q ss_pred             CCCCCCCCCCCCCceecCC-CceEeeCCCCCccCCCCccccccCcccceeeccccCcccccccCCcccccceecccccce
Q psy2857         143 DECQLGDPCGPQAQCTNTP-GSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIF  221 (332)
Q Consensus       143 ~~C~~~~~C~~~~~C~~~~-~~~~C~C~~G~~g~~~~~~c~~~~c~~~~~c~~~~~~~~~~~~~~~~~~~c~c~~~~~~~  221 (332)
                      +.|. .++|+++|+|...+ +.|.|.|++-|.|..                                             
T Consensus      3865 d~C~-~npCqhgG~C~~~~~ggy~CkCpsqysG~~--------------------------------------------- 3898 (4289)
T KOG1219|consen 3865 DPCN-DNPCQHGGTCISQPKGGYKCKCPSQYSGNH--------------------------------------------- 3898 (4289)
T ss_pred             cccc-cCcccCCCEecCCCCCceEEeCcccccCcc---------------------------------------------
Confidence            5565 57788888887665 667788887777643                                             


Q ss_pred             ecccccEEecccCccccccccCccCCCCCCCCCeeeecCCceeeecCCCcccCCCCcccccccccCCCCCCCCCCeeecC
Q psy2857         222 SKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENT  301 (332)
Q Consensus       222 ~~~~~g~~~~~~~~~~~~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~C~~~d~C~~~~~~C~~~~~C~~~  301 (332)
                                      +..++..|.++||..+++|+...++|.|.|+.||+|..|+. ..+++|+.  ++|.++|.|+|+
T Consensus      3899 ----------------CEi~~epC~snPC~~GgtCip~~n~f~CnC~~gyTG~~Ce~-~Gi~eCs~--n~C~~gg~C~n~ 3959 (4289)
T KOG1219|consen 3899 ----------------CEIDLEPCASNPCLTGGTCIPFYNGFLCNCPNGYTGKRCEA-RGISECSK--NVCGTGGQCINI 3959 (4289)
T ss_pred             ----------------cccccccccCCCCCCCCEEEecCCCeeEeCCCCccCceeec-cccccccc--ccccCCceeecc
Confidence                            34566789999999999999999999999999999998873 23999985  799999999999


Q ss_pred             CCceeeeCCCCCCCCCC
Q psy2857         302 VPGFNCLCPKGYSGKPD  318 (332)
Q Consensus       302 ~g~~~C~C~~g~~g~~~  318 (332)
                      .|+|+|.|-+||.|..+
T Consensus      3960 ~gsf~CncT~g~~gr~c 3976 (4289)
T KOG1219|consen 3960 PGSFHCNCTPGILGRTC 3976 (4289)
T ss_pred             CCceEeccChhHhcccC
Confidence            99999999999998853

>KOG1219|consensus

Probab=99.20  E-value=4.4e-11  Score=119.81  Aligned_cols=111  Identities=40%  Similarity=1.008  Sum_probs=96.3

Q ss_pred             CcCCCCCCCCCCeeeeC-CCCeEeeCCCCCccCCCCCCCCcccccCCCCCCCCCCceeeCCCCeeeeCCCCCCCCCCCcc
Q psy2857          20 NECQSNPCGVNATCIDT-QGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKV   98 (332)
Q Consensus        20 ~~C~~~~C~~~g~C~~~-~g~~~C~C~~G~~g~~~~~C~~~~~c~~~~~~C~~~~~C~~~~~~~~C~C~~g~~~~~~~~~   98 (332)
                      ++|..+||.++|+|+.. .++|.|.|++.|.|..|+  .++.+|.  +.||..+++|+-..++|.|.|+.||+|.     
T Consensus      3865 d~C~~npCqhgG~C~~~~~ggy~CkCpsqysG~~CE--i~~epC~--snPC~~GgtCip~~n~f~CnC~~gyTG~----- 3935 (4289)
T KOG1219|consen 3865 DPCNDNPCQHGGTCISQPKGGYKCKCPSQYSGNHCE--IDLEPCA--SNPCLTGGTCIPFYNGFLCNCPNGYTGK----- 3935 (4289)
T ss_pred             cccccCcccCCCEecCCCCCceEEeCcccccCcccc--ccccccc--CCCCCCCCEEEecCCCeeEeCCCCccCc-----
Confidence            78999999999999998 478999999999998876  4778886  4899999999999999999999999987     


Q ss_pred             ceeeccCCCCCCCCccccCCCcccCceecCCCCccCCCCeeecCCCCCCCCCCCCCCceecCCCceEeeCCCCCccCCC
Q psy2857          99 ACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPP  177 (332)
Q Consensus        99 ~c~~~~~~~~c~~~~~C~~~~~c~~~~c~C~~g~~~~g~~c~~~~~C~~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~  177 (332)
                      +|+.-                                     .+++|+ .++|.+++.|++..|+|.|.|-+||.|..+
T Consensus      3936 ~Ce~~-------------------------------------Gi~eCs-~n~C~~gg~C~n~~gsf~CncT~g~~gr~c 3976 (4289)
T KOG1219|consen 3936 RCEAR-------------------------------------GISECS-KNVCGTGGQCINIPGSFHCNCTPGILGRTC 3976 (4289)
T ss_pred             eeecc-------------------------------------cccccc-cccccCCceeeccCCceEeccChhHhcccC
Confidence            44320                                     266886 789999999999999999999999998654

>KOG1225|consensus

Probab=99.10  E-value=2e-09  Score=97.82  Aligned_cols=155  Identities=25%  Similarity=0.550  Sum_probs=110.6

Q ss_pred             CeeeeCCCCCCCCCCCccceeeccCCCCCCCCccccCCCcccCceecCCCCccCCCCeeecCCCCCCCCCCCCCCceecC
Q psy2857          81 GFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNT  160 (332)
Q Consensus        81 ~~~C~C~~g~~~~~~~~~~c~~~~~~~~c~~~~~C~~~~~c~~~~c~C~~g~~~~g~~c~~~~~C~~~~~C~~~~~C~~~  160 (332)
                      .+.|.|..+|.+..+....|+.           .|..++.|+.+.|.|++||.  |..|.. ..|.  ..|+.++.+++.
T Consensus       233 ~~ic~c~~~~~g~~c~~~~C~~-----------~c~~~g~c~~G~CIC~~Gf~--G~dC~e-~~Cp--~~cs~~g~~~~g  296 (525)
T KOG1225|consen  233 DGICECPEGYFGPLCSTIYCPG-----------GCTGRGQCVEGRCICPPGFT--GDDCDE-LVCP--VDCSGGGVCVDG  296 (525)
T ss_pred             CceeecCCceeCCccccccCCC-----------CCcccceEeCCeEeCCCCCc--CCCCCc-ccCC--cccCCCceecCC
Confidence            4479999999998655433322           56667889999999999999  888865 3463  448887887755


Q ss_pred             CCceEeeCCCCCccCCCCccccccCcccceeeccccCcccccccCCcccccceecccccceecccccEEecccCcccccc
Q psy2857         161 PGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRV  240 (332)
Q Consensus       161 ~~~~~C~C~~G~~g~~~~~~c~~~~c~~~~~c~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~~~g~~~~~~~~~~~~~  240 (332)
                          .|.|++||+|..+..+=-..+|..++.|.               ...|.|.+          ||++..|..     
T Consensus       297 ----~CiC~~g~~G~dCs~~~cpadC~g~G~Ci---------------~G~C~C~~----------Gy~G~~C~~-----  342 (525)
T KOG1225|consen  297 ----ECICNPGYSGKDCSIRRCPADCSGHGKCI---------------DGECLCDE----------GYTGELCIQ-----  342 (525)
T ss_pred             ----EeecCCCccccccccccCCccCCCCCccc---------------CCceEeCC----------CCcCCcccc-----
Confidence                89999999999886532335677777776               67899999          999875542     


Q ss_pred             ccCccCCCCCCCCCeeeecCCceeeecCCCcccCCCCcccccccccCCCCCCCCCCeeecCC
Q psy2857         241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV  302 (332)
Q Consensus       241 ~~~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~C~~~d~C~~~~~~C~~~~~C~~~~  302 (332)
                             ..|..++.|++     .|.|..||.|.+ .   .-+.+.. ...|.....|+...
T Consensus       343 -------~~C~~~g~cv~-----gC~C~~Gw~G~d-~---~~~~~~~-~~~cs~~~~~~~~~  387 (525)
T KOG1225|consen  343 -------RACSGGGQCVN-----GCKCKKGWRGPD-V---ADPSLLL-ITECSPPSLCIAGV  387 (525)
T ss_pred             -------cccCCCceecc-----CceeccCccCCC-c---CCchhhc-ccccCCCceeeccc
Confidence                   23778888887     399999999986 1   1222222 23566666776665

>KOG1225|consensus

Probab=99.07  E-value=6.7e-10  Score=100.85  Aligned_cols=131  Identities=27%  Similarity=0.744  Sum_probs=100.7

Q ss_pred             EEEecCCceecccCCcCCCCCCCCCCeeeeCCCCeEeeCCCCCccCCCCCCCCcccccCCCCCCCCCCceeeCCCCeeee
Q psy2857           6 LVRILLGVRAIVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCL   85 (332)
Q Consensus         6 ~c~c~~g~~~~~~~~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~c~~~~~~C~~~~~C~~~~~~~~C~   85 (332)
                      +|.|..+|++......=.+..|..++.|++..    |+|++||+|.++..    ..|   +..|+.++.+++.    .|.
T Consensus       235 ic~c~~~~~g~~c~~~~C~~~c~~~g~c~~G~----CIC~~Gf~G~dC~e----~~C---p~~cs~~g~~~~g----~Ci  299 (525)
T KOG1225|consen  235 ICECPEGYFGPLCSTIYCPGGCTGRGQCVEGR----CICPPGFTGDDCDE----LVC---PVDCSGGGVCVDG----ECI  299 (525)
T ss_pred             eeecCCceeCCccccccCCCCCcccceEeCCe----EeCCCCCcCCCCCc----ccC---CcccCCCceecCC----Eee
Confidence            58899999998655444445577778898875    99999999987742    223   3448777877766    899


Q ss_pred             CCCCCCCCCCCccceeeccCCCCCCCCccccCCCcccCceecCCCCccCCCCeeecCCCCCCCCCCCCCCceecCCCceE
Q psy2857          86 CPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFR  165 (332)
Q Consensus        86 C~~g~~~~~~~~~~c~~~~~~~~c~~~~~C~~~~~c~~~~c~C~~g~~~~g~~c~~~~~C~~~~~C~~~~~C~~~~~~~~  165 (332)
                      |.+||+|..++..+|.           ..|..++.|++++|.|.+||+  |..|...       .|.+++.|++.     
T Consensus       300 C~~g~~G~dCs~~~cp-----------adC~g~G~Ci~G~C~C~~Gy~--G~~C~~~-------~C~~~g~cv~g-----  354 (525)
T KOG1225|consen  300 CNPGYSGKDCSIRRCP-----------ADCSGHGKCIDGECLCDEGYT--GELCIQR-------ACSGGGQCVNG-----  354 (525)
T ss_pred             cCCCccccccccccCC-----------ccCCCCCcccCCceEeCCCCc--CCccccc-------ccCCCceeccC-----
Confidence            9999999977654432           378999999999999999998  7777533       27788888752     


Q ss_pred             eeCCCCCccCC
Q psy2857         166 CDCVEGYVGAP  176 (332)
Q Consensus       166 C~C~~G~~g~~  176 (332)
                      |.|..||.|.+
T Consensus       355 C~C~~Gw~G~d  365 (525)
T KOG1225|consen  355 CKCKKGWRGPD  365 (525)
T ss_pred             ceeccCccCCC
Confidence            89999999876

>KOG4260|consensus

Probab=98.95  E-value=1.5e-09  Score=88.18  Aligned_cols=135  Identities=29%  Similarity=0.623  Sum_probs=89.6

Q ss_pred             CeeeeCCCCeEeeCCCCCccCCCCCCCCcccccCCCCCCCCCCceee---CCCCeeeeCCCCCCCCCCCccceeeccC--
Q psy2857          31 ATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICEN---TVPGFNCLCPKGYSGKPDAKVACEQVDV--  105 (332)
Q Consensus        31 g~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~c~~~~~~C~~~~~C~~---~~~~~~C~C~~g~~~~~~~~~~c~~~~~--  105 (332)
                      ..|+...   .--|+.|..|.++..|...     ...+|..++.|..   ..|+-.|.|..||.|..+..---+....  
T Consensus       122 WlCvdqL---kvCCp~gtyGpdCl~Cpgg-----ser~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~~Cg~eyfes~R  193 (350)
T KOG4260|consen  122 WLCVDQL---KVCCPDGTYGPDCLQCPGG-----SERPCFGNGSCHGDGSREGSGKCKCETGYTGPLCRYCGIEYFESSR  193 (350)
T ss_pred             Hhhhhhh---eeccCCCCcCCccccCCCC-----CcCCcCCCCcccCCCCCCCCCcccccCCCCCccccccchHHHHhhc
Confidence            3454443   3447889999888766542     2367998999963   3456799999999998543210000000  


Q ss_pred             ---CCCCCC-CccccCCCccc----CceecCCCCccCCCCeeecCCCCC-CCCCCCCCCceecCCCceEeeCCCCCccC
Q psy2857         106 ---TSECSS-NFECVNNAECV----DGLCYCRPGFDARGSVCVDVDECQ-LGDPCGPQAQCTNTPGSFRCDCVEGYVGA  175 (332)
Q Consensus       106 ---~~~c~~-~~~C~~~~~c~----~~~c~C~~g~~~~g~~c~~~~~C~-~~~~C~~~~~C~~~~~~~~C~C~~G~~g~  175 (332)
                         ...|.+ ...|..  .|.    ..--.|..||..+...|+|+++|. .+.+|..+..|+|+.|+|.|...+||.+.
T Consensus       194 ne~~lvCt~Ch~~C~~--~Csg~~~k~C~kCkkGW~lde~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~g  270 (350)
T KOG4260|consen  194 NEQHLVCTACHEGCLG--VCSGESSKGCSKCKKGWKLDEEGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKKG  270 (350)
T ss_pred             ccccchhhhhhhhhhc--ccCCCCCCChhhhcccceecccccccHHHHhcCCCCCChhheeecCCCceEecccccccCC
Confidence               001111 011211  111    123468999999889999999997 67899999999999999999999999863

>KOG4289|consensus

Probab=98.93  E-value=1.5e-09  Score=105.48  Aligned_cols=79  Identities=32%  Similarity=0.745  Sum_probs=65.8

Q ss_pred             cEEecccCccccccccCccCCCCCCCCCeeeecCCceeeecCCCcccCCCCcccccccccCCCCCCCCCCeeecC-CCce
Q psy2857         227 LFVIEDAKRNLNRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENT-VPGF  305 (332)
Q Consensus       227 g~~~~~~~~~~~~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~C~~~d~C~~~~~~C~~~~~C~~~-~g~~  305 (332)
                      |||+.+     +..++|+|-+.||.++++|....|+|+|.|++||+|.+|+.-...-.|..  +.|.++++|++. .|+|
T Consensus      1229 GFTgd~-----CeTeiDlCYs~pC~nng~C~srEggYtCeCrpg~tGehCEvs~~agrCvp--GvC~nggtC~~~~nggf 1301 (2531)
T KOG4289|consen 1229 GFTGDY-----CETEIDLCYSGPCGNNGRCRSREGGYTCECRPGFTGEHCEVSARAGRCVP--GVCKNGGTCVNLLNGGF 1301 (2531)
T ss_pred             CCCccc-----ccchhHhhhcCCCCCCCceEEecCceeEEecCCccccceeeecccCcccc--ceecCCCEEeecCCCce
Confidence            666653     35688999999999999999999999999999999998873333455654  689999999865 6889


Q ss_pred             eeeCCCC
Q psy2857         306 NCLCPKG  312 (332)
Q Consensus       306 ~C~C~~g  312 (332)
                      .|.|+.|
T Consensus      1302 ~c~Cp~g 1308 (2531)
T KOG4289|consen 1302 CCHCPYG 1308 (2531)
T ss_pred             eccCCCc
Confidence            9999988

>KOG4289|consensus

Probab=98.92  E-value=1.3e-09  Score=105.88  Aligned_cols=83  Identities=31%  Similarity=0.740  Sum_probs=73.1

Q ss_pred             EEEEecCCceec---ccCCcCCCCCCCCCCeeeeCCCCeEeeCCCCCccCCCCCCCCcccccCCCCCCCCCCceeeC-CC
Q psy2857           5 VLVRILLGVRAI---VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENT-VP   80 (332)
Q Consensus         5 ~~c~c~~g~~~~---~~~~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~c~~~~~~C~~~~~C~~~-~~   80 (332)
                      ..|+|++||+|+   +.||.|-+.||+++|.|..-.|+|.|.|.+||+|..|+.-.....|  .+..|+++++|.+. .+
T Consensus      1222 lrCrCPpGFTgd~CeTeiDlCYs~pC~nng~C~srEggYtCeCrpg~tGehCEvs~~agrC--vpGvC~nggtC~~~~ng 1299 (2531)
T KOG4289|consen 1222 LRCRCPPGFTGDYCETEIDLCYSGPCGNNGRCRSREGGYTCECRPGFTGEHCEVSARAGRC--VPGVCKNGGTCVNLLNG 1299 (2531)
T ss_pred             eeEeCCCCCCcccccchhHhhhcCCCCCCCceEEecCceeEEecCCccccceeeecccCcc--ccceecCCCEEeecCCC
Confidence            579999999999   7799999999999999999999999999999999887644455566  36899999999886 56


Q ss_pred             CeeeeCCCC
Q psy2857          81 GFNCLCPKG   89 (332)
Q Consensus        81 ~~~C~C~~g   89 (332)
                      +|.|.|+.|
T Consensus      1300 gf~c~Cp~g 1308 (2531)
T KOG4289|consen 1300 GFCCHCPYG 1308 (2531)
T ss_pred             ceeccCCCc
Confidence            899999987

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=98.79  E-value=4e-09  Score=62.62  Aligned_cols=38  Identities=39%  Similarity=0.804  Sum_probs=34.3

Q ss_pred             ccccccCCCCCCCCCCeeecCCCceeeeCCCCCCCCCC
Q psy2857         281 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPD  318 (332)
Q Consensus       281 ~~d~C~~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~  318 (332)
                      |||||....+.|..++.|+|+.|+|+|.|++||+....
T Consensus         1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~~~   38 (42)
T PF07645_consen    1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYELNDD   38 (42)
T ss_dssp             ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEEECTT
T ss_pred             CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEECCC
Confidence            68999998899998999999999999999999995443

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>KOG4260|consensus

Probab=98.74  E-value=1.8e-08  Score=81.97  Aligned_cols=161  Identities=30%  Similarity=0.588  Sum_probs=98.1

Q ss_pred             CCCCccCCCCeeecCCCCC--CCCCCCCCCceec---CCCceEeeCCCCCccCCCCcccc-----ccCcccceeeccccC
Q psy2857         128 CRPGFDARGSVCVDVDECQ--LGDPCGPQAQCTN---TPGSFRCDCVEGYVGAPPRIKCK-----DVRWEFNVTLLFYET  197 (332)
Q Consensus       128 C~~g~~~~g~~c~~~~~C~--~~~~C~~~~~C~~---~~~~~~C~C~~G~~g~~~~~~c~-----~~~c~~~~~c~~~~~  197 (332)
                      |++|-.  |..|.   .|.  ...+|..++.|..   ..|+..|.|.+||.|..+.. |.     ..+=..+..|.-...
T Consensus       132 Cp~gty--GpdCl---~Cpggser~C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~~-Cg~eyfes~Rne~~lvCt~Ch~  205 (350)
T KOG4260|consen  132 CPDGTY--GPDCL---QCPGGSERPCFGNGSCHGDGSREGSGKCKCETGYTGPLCRY-CGIEYFESSRNEQHLVCTACHE  205 (350)
T ss_pred             cCCCCc--CCccc---cCCCCCcCCcCCCCcccCCCCCCCCCcccccCCCCCccccc-cchHHHHhhcccccchhhhhhh
Confidence            555554  55553   221  1245777777763   34778999999999976532 10     000001111110000


Q ss_pred             cccccccCCcccccceecc-cccceecccccEEecccCccccccccCccCC--CCCCCCCeeeecCCceeeecCCCcccC
Q psy2857         198 DYLHSVASDISDILTIIHE-FSRIFSKHLKLFVIEDAKRNLNRVDINECQS--NPCGVNATCIDTQGSYSCVCKEHYTGD  274 (332)
Q Consensus       198 ~~~~~~~~~~~~~~c~c~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~C~~--~~C~~~~~C~~~~~~~~C~C~~G~~g~  274 (332)
                      ...         .  .|.. .....+.+..||...    ...|+|||+|..  .||..+..|+|+.|||.|.+++||.+.
T Consensus       206 ~C~---------~--~Csg~~~k~C~kCkkGW~ld----e~gCvDvnEC~~ep~~c~~~qfCvNteGSf~C~dk~Gy~~g  270 (350)
T KOG4260|consen  206 GCL---------G--VCSGESSKGCSKCKKGWKLD----EEGCVDVNECQNEPAPCKAHQFCVNTEGSFKCEDKEGYKKG  270 (350)
T ss_pred             hhh---------c--ccCCCCCCChhhhcccceec----ccccccHHHHhcCCCCCChhheeecCCCceEecccccccCC
Confidence            000         0  0111 122344556688665    346899999965  679999999999999999999999762


Q ss_pred             CCCcccccccccCCCCCCC-CCCeeecCCCceeeeCCCCCCCC
Q psy2857         275 PYQACSDIDECKALDKPCG-LRAICENTVPGFNCLCPKGYSGK  316 (332)
Q Consensus       275 ~~~~C~~~d~C~~~~~~C~-~~~~C~~~~g~~~C~C~~g~~g~  316 (332)
                             +|+|......|. .+..|.|+.++|+|+|..|+.-.
T Consensus       271 -------~d~C~~~~d~~~~kn~~c~ni~~~~r~v~f~~~~~~  306 (350)
T KOG4260|consen  271 -------VDECQFCADVCASKNRPCMNIDGQYRCVCFSGLIII  306 (350)
T ss_pred             -------hHHhhhhhhhcccCCCCcccCCccEEEEecccceee
Confidence                   466654333443 25789999999999999887543

>KOG0994|consensus

Probab=98.74  E-value=7.7e-08  Score=92.32  Aligned_cols=138  Identities=22%  Similarity=0.440  Sum_probs=68.8

Q ss_pred             CCceEeeCCCCCccCCCCccccccCcccceeeccccCcccccccCCcccccceecccccceecccccEEecccCc---cc
Q psy2857         161 PGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKR---NL  237 (332)
Q Consensus       161 ~~~~~C~C~~G~~g~~~~~~c~~~~c~~~~~c~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~~~g~~~~~~~~---~~  237 (332)
                      .|.+--.|..||.|+.....|+...|..-++-.        ....+..+..|.|.+          .+.+..|.+   +.
T Consensus       996 eG~hCe~Ck~Gf~GdA~~q~CqrC~Cn~LGTn~--------~~~CDr~tGQCpClp----------Nv~G~~CDqCA~N~ 1057 (1758)
T KOG0994|consen  996 EGDHCEHCKDGFYGDALRQNCQRCVCNFLGTNS--------TCHCDRFTGQCPCLP----------NVQGVRCDQCAENH 1057 (1758)
T ss_pred             cccchhhccccchhHHHHhhhhhheccccccCC--------ccccccccCcCCCCc----------ccccccccccccch
Confidence            344434789999999888777766654433321        122344455566665          222222210   00


Q ss_pred             ccc-ccCccCCCCCC--CCCeeeecCCceeeecCCCcccCCCCcccccc-----------cccCC---CCCCCC-CC--e
Q psy2857         238 NRV-DINECQSNPCG--VNATCIDTQGSYSCVCKEHYTGDPYQACSDID-----------ECKAL---DKPCGL-RA--I  297 (332)
Q Consensus       238 ~~~-~~~~C~~~~C~--~~~~C~~~~~~~~C~C~~G~~g~~~~~C~~~d-----------~C~~~---~~~C~~-~~--~  297 (332)
                      --. .-..|++-.|.  ..-+|....|  +|+|++||-|..|..|++.-           +|..-   .-.|.. .|  .
T Consensus      1058 w~laSG~GCe~C~Cd~~~~pqCN~ftG--QCqCkpGfGGR~C~qCqel~WGdP~~~C~aCdCd~rG~~tpQCdr~tG~C~ 1135 (1758)
T KOG0994|consen 1058 WNLASGEGCEPCNCDPIGGPQCNEFTG--QCQCKPGFGGRTCSQCQELYWGDPNEKCRACDCDPRGIETPQCDRATGRCV 1135 (1758)
T ss_pred             hccccCCCCCccCCCccCCcccccccc--ceeccCCCCCcchhHHHHhhcCCCCCCceecCCCCCCCCCCCccccCCcee
Confidence            000 00012211121  1225655555  89999999998776665421           12110   012332 22  3


Q ss_pred             eecCCCceeee-CCCCCCCCCC
Q psy2857         298 CENTVPGFNCL-CPKGYSGKPD  318 (332)
Q Consensus       298 C~~~~g~~~C~-C~~g~~g~~~  318 (332)
                      |....++++|. |..||.|.-.
T Consensus      1136 C~~Gv~G~rCdqCaRgy~G~fP 1157 (1758)
T KOG0994|consen 1136 CRPGVGGPRCDQCARGYSGQFP 1157 (1758)
T ss_pred             ecCCCCCcchhhhhhhhcCCCC
Confidence            44566667773 7777777643

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=98.25  E-value=1.1e-06  Score=52.07  Aligned_cols=34  Identities=47%  Similarity=1.037  Sum_probs=29.7

Q ss_pred             ccCccCC--CCCCCCCeeeecCCceeeecCCCcccC
Q psy2857         241 DINECQS--NPCGVNATCIDTQGSYSCVCKEHYTGD  274 (332)
Q Consensus       241 ~~~~C~~--~~C~~~~~C~~~~~~~~C~C~~G~~g~  274 (332)
                      |||||..  ..|..++.|+|+.|+|+|.|++||...
T Consensus         1 DidEC~~~~~~C~~~~~C~N~~Gsy~C~C~~Gy~~~   36 (42)
T PF07645_consen    1 DIDECAEGPHNCPENGTCVNTEGSYSCSCPPGYELN   36 (42)
T ss_dssp             ESSTTTTTSSSSSTTSEEEEETTEEEEEESTTEEEC
T ss_pred             CccccCCCCCcCCCCCEEEcCCCCEEeeCCCCcEEC
Confidence            5789976  469889999999999999999999843

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=98.14  E-value=2.1e-06  Score=47.40  Aligned_cols=30  Identities=53%  Similarity=1.198  Sum_probs=27.0

Q ss_pred             cCCCCCCCCCeeeecC-CceeeecCCCcccC
Q psy2857         245 CQSNPCGVNATCIDTQ-GSYSCVCKEHYTGD  274 (332)
Q Consensus       245 C~~~~C~~~~~C~~~~-~~~~C~C~~G~~g~  274 (332)
                      |.++||.++++|++.. ++|+|.|++||+|.
T Consensus         1 C~~~~C~n~g~C~~~~~~~y~C~C~~G~~G~   31 (32)
T PF00008_consen    1 CSSNPCQNGGTCIDLPGGGYTCECPPGYTGK   31 (32)
T ss_dssp             TTTTSSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred             CCCCcCCCCeEEEeCCCCCEEeECCCCCccC
Confidence            4457899999999999 99999999999986

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=98.02  E-value=1e-05  Score=47.08  Aligned_cols=35  Identities=49%  Similarity=1.099  Sum_probs=29.9

Q ss_pred             ccccccCCCCCCCCCCeeecCCCceeeeCCCCCC-CC
Q psy2857         281 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYS-GK  316 (332)
Q Consensus       281 ~~d~C~~~~~~C~~~~~C~~~~g~~~C~C~~g~~-g~  316 (332)
                      ++|+|... .+|.++++|+++.++|.|.|++||+ |.
T Consensus         1 d~~~C~~~-~~C~~~~~C~~~~g~~~C~C~~g~~~g~   36 (39)
T smart00179        1 DIDECASG-NPCQNGGTCVNTVGSYRCECPPGYTDGR   36 (39)
T ss_pred             CcccCcCC-CCcCCCCEeECCCCCeEeECCCCCccCC
Confidence            46888754 6899888999999999999999999 54

>smart00179 EGF_CA Calcium-binding EGF-like domain

Probab=97.99  E-value=1.2e-05  Score=46.70  Aligned_cols=35  Identities=54%  Similarity=1.138  Sum_probs=30.6

Q ss_pred             cCCcCCC-CCCCCCCeeeeCCCCeEeeCCCCCc-cCC
Q psy2857          18 DINECQS-NPCGVNATCIDTQGSYSCVCKEHYT-GDP   52 (332)
Q Consensus        18 ~~~~C~~-~~C~~~g~C~~~~g~~~C~C~~G~~-g~~   52 (332)
                      ++++|.. .+|..+++|+++.++|.|.|++||. |..
T Consensus         1 d~~~C~~~~~C~~~~~C~~~~g~~~C~C~~g~~~g~~   37 (39)
T smart00179        1 DIDECASGNPCQNGGTCVNTVGSYRCECPPGYTDGRN   37 (39)
T ss_pred             CcccCcCCCCcCCCCEeECCCCCeEeECCCCCccCCc
Confidence            4688887 7899889999999999999999998 643

>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=97.97  E-value=4.3e-06  Score=46.17  Aligned_cols=30  Identities=53%  Similarity=1.198  Sum_probs=27.2

Q ss_pred             CCCCCCCCCCeeeeCC-CCeEeeCCCCCccC
Q psy2857          22 CQSNPCGVNATCIDTQ-GSYSCVCKEHYTGD   51 (332)
Q Consensus        22 C~~~~C~~~g~C~~~~-g~~~C~C~~G~~g~   51 (332)
                      |.+.+|.++|+|++.. +.|.|+|++||+|.
T Consensus         1 C~~~~C~n~g~C~~~~~~~y~C~C~~G~~G~   31 (32)
T PF00008_consen    1 CSSNPCQNGGTCIDLPGGGYTCECPPGYTGK   31 (32)
T ss_dssp             TTTTSSTTTEEEEEESTSEEEEEEBTTEEST
T ss_pred             CCCCcCCCCeEEEeCCCCCEEeECCCCCccC
Confidence            5667899999999998 99999999999985

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=97.91  E-value=4.7e-06  Score=47.11  Aligned_cols=32  Identities=31%  Similarity=0.664  Sum_probs=25.4

Q ss_pred             cCCCCCCCCCCeeecCCCceeeeCCCCCCCCC
Q psy2857         286 KALDKPCGLRAICENTVPGFNCLCPKGYSGKP  317 (332)
Q Consensus       286 ~~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~  317 (332)
                      ....+.|..+++|+++.++|.|+|++||+|+.
T Consensus         2 ~~~~~~C~~nA~C~~~~~~~~C~C~~Gy~GdG   33 (36)
T PF12947_consen    2 LENNGGCHPNATCTNTGGSYTCTCKPGYEGDG   33 (36)
T ss_dssp             TTGGGGS-TTCEEEE-TTSEEEEE-CEEECCS
T ss_pred             CCCCCCCCCCcEeecCCCCEEeECCCCCccCC
Confidence            34457899999999999999999999999985

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>KOG1226|consensus

Probab=97.89  E-value=0.00016  Score=67.96  Aligned_cols=138  Identities=30%  Similarity=0.671  Sum_probs=87.9

Q ss_pred             CCCCCeeeeCCCCeEeeCCCCCccCCCCCCC-------CcccccCC--CCCCCCCCceeeCCCCeeeeCCCCCCCCCCCc
Q psy2857          27 CGVNATCIDTQGSYSCVCKEHYTGDPYQACS-------DIDECKAL--DKPCGLRAICENTVPGFNCLCPKGYSGKPDAK   97 (332)
Q Consensus        27 C~~~g~C~~~~g~~~C~C~~G~~g~~~~~C~-------~~~~c~~~--~~~C~~~~~C~~~~~~~~C~C~~g~~~~~~~~   97 (332)
                      |+.+|...-..    |.|.+||.|..++--.       ..+.|...  ..+|+.+|.|.=.    .|.|.+...+.-.++
T Consensus       469 C~g~G~~~CG~----C~C~~G~~G~~CEC~~~~~ss~~~~~~Cr~~~~~~vCSgrG~C~CG----qC~C~~~~~~~i~G~  540 (783)
T KOG1226|consen  469 CHGNGTFVCGQ----CRCDEGWLGKKCECSTDELSSSEEEDKCRENSDSPVCSGRGDCVCG----QCVCHKPDNGKIYGK  540 (783)
T ss_pred             cCCCCcEEecc----eecCCCCCCCcccCCccccCcHhHHhhccCCCCCCCcCCCCcEeCC----ceEecCCCCCceeee
Confidence            55555554443    8999999998774111       12334321  2379999999776    789988776432222


Q ss_pred             cceeeccCCCCCCCCccccCCCcccCceecCCCCccCCCCeee---cCCCCC--CCCCCCCCCceecCCCceEeeCCCC-
Q psy2857          98 VACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGSVCV---DVDECQ--LGDPCGPQAQCTNTPGSFRCDCVEG-  171 (332)
Q Consensus        98 ~~c~~~~~~~~c~~~~~C~~~~~c~~~~c~C~~g~~~~g~~c~---~~~~C~--~~~~C~~~~~C~~~~~~~~C~C~~G-  171 (332)
                       .|+.-++.=+-.....|..++.|.-++|.|.+||+  |..|.   +.+.|.  ....|..+++|.=.    +|.|... 
T Consensus       541 -fCECDnfsC~r~~g~lC~g~G~C~CG~CvC~~Gwt--G~~C~C~~std~C~~~~G~iCSGrG~C~Cg----~C~C~~~~  613 (783)
T KOG1226|consen  541 -FCECDNFSCERHKGVLCGGHGRCECGRCVCNPGWT--GSACNCPLSTDTCESSDGQICSGRGTCECG----RCKCTDPP  613 (783)
T ss_pred             -eeeccCcccccccCcccCCCCeEeCCcEEcCCCCc--cCCCCCCCCCccccCCCCceeCCCceeeCC----ceEcCCCC
Confidence             56544432111234578889999999999999999  66663   455565  23467777777643    6777655 


Q ss_pred             CccCCCCc
Q psy2857         172 YVGAPPRI  179 (332)
Q Consensus       172 ~~g~~~~~  179 (332)
                      |.|..++.
T Consensus       614 ~sG~~CE~  621 (783)
T KOG1226|consen  614 YSGEFCEK  621 (783)
T ss_pred             cCcchhhc
Confidence            88876654

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=97.86  E-value=1.2e-05  Score=40.64  Aligned_cols=23  Identities=48%  Similarity=1.028  Sum_probs=19.3

Q ss_pred             ceeeecCCCcccCCC-Cccccccc
Q psy2857         262 SYSCVCKEHYTGDPY-QACSDIDE  284 (332)
Q Consensus       262 ~~~C~C~~G~~g~~~-~~C~~~d~  284 (332)
                      ||+|+|++||++... ..|+||||
T Consensus         1 sy~C~C~~Gy~l~~d~~~C~DIdE   24 (24)
T PF12662_consen    1 SYTCSCPPGYQLSPDGRSCEDIDE   24 (24)
T ss_pred             CEEeeCCCCCcCCCCCCccccCCC
Confidence            689999999997644 67999986

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=97.65  E-value=9.2e-05  Score=42.53  Aligned_cols=35  Identities=54%  Similarity=1.146  Sum_probs=30.2

Q ss_pred             cCCcCCC-CCCCCCCeeeeCCCCeEeeCCCCCccCC
Q psy2857          18 DINECQS-NPCGVNATCIDTQGSYSCVCKEHYTGDP   52 (332)
Q Consensus        18 ~~~~C~~-~~C~~~g~C~~~~g~~~C~C~~G~~g~~   52 (332)
                      ++++|.. .+|..++.|++..+.|.|.|++||.|..
T Consensus         1 ~~~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~   36 (38)
T cd00054           1 DIDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRN   36 (38)
T ss_pred             CcccCCCCCCcCCCCEeECCCCCeEeECCCCCcCCc
Confidence            3578877 7898889999999999999999999853

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=97.65  E-value=4.8e-05  Score=38.43  Aligned_cols=24  Identities=38%  Similarity=1.035  Sum_probs=21.1

Q ss_pred             ceeeeCCCCCCCCCCCCcccccccc
Q psy2857         304 GFNCLCPKGYSGKPDAKVACEQEKA  328 (332)
Q Consensus       304 ~~~C~C~~g~~g~~~~~~~c~~~~~  328 (332)
                      ||+|.|++||...+.++ .|.+|+|
T Consensus         1 sy~C~C~~Gy~l~~d~~-~C~DIdE   24 (24)
T PF12662_consen    1 SYTCSCPPGYQLSPDGR-SCEDIDE   24 (24)
T ss_pred             CEEeeCCCCCcCCCCCC-ccccCCC
Confidence            68999999999998775 8999875

>KOG1836|consensus

Probab=97.64  E-value=0.0016  Score=67.96  Aligned_cols=140  Identities=21%  Similarity=0.359  Sum_probs=70.0

Q ss_pred             CCCceEeeCCCCCccCCCC----ccccccCcccceeeccccCcccccccCCcccccceeccccc--ceecccccEEeccc
Q psy2857         160 TPGSFRCDCVEGYVGAPPR----IKCKDVRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSR--IFSKHLKLFVIEDA  233 (332)
Q Consensus       160 ~~~~~~C~C~~G~~g~~~~----~~c~~~~c~~~~~c~~~~~~~~~~~~~~~~~~~c~c~~~~~--~~~~~~~g~~~~~~  233 (332)
                      +.+.+.=.|.+||.|++-.    ..|....|...+.-..       ....+....-|.|.+...  ....++.|+..-..
T Consensus       863 T~g~~cd~c~~g~~gd~l~~~p~~~c~~c~c~p~gs~~~-------~~~c~~~tGQcec~~~v~g~~c~~c~~g~fnl~s  935 (1705)
T KOG1836|consen  863 TAGEYCDLCKEGYFGDPLAPNPEDKCFACGCVPAGSELP-------SLTCNPVTGQCECKPNVEGRDCLYCFKGFFNLNS  935 (1705)
T ss_pred             cccccccccccCccccccCCCcCCccccccCccCCcccc-------cccCCCcccceeccCCCCccccccccccccccCC
Confidence            3344444788999987654    3455544443333220       112223344555555332  23444555543321


Q ss_pred             CccccccccCccCCCCCCC----CCeeeecCCceeeecCCCcccCCCCcccccc------cccCCCCCCCCC----Ceee
Q psy2857         234 KRNLNRVDINECQSNPCGV----NATCIDTQGSYSCVCKEHYTGDPYQACSDID------ECKALDKPCGLR----AICE  299 (332)
Q Consensus       234 ~~~~~~~~~~~C~~~~C~~----~~~C~~~~~~~~C~C~~G~~g~~~~~C~~~d------~C~~~~~~C~~~----~~C~  299 (332)
                      .        ..|++-+|..    +..|+...|  +|.|.+|-+|.++..|....      .|..  -.|...    ..|.
T Consensus       936 ~--------~gC~~c~c~~~gs~~~~c~~~tG--qc~c~~gVtgqrc~qc~~~~~~~~~~gc~~--c~c~~~Gs~~~qc~ 1003 (1705)
T KOG1836|consen  936 G--------VGCEPCNCDPTGSESSDCDVGTG--QCYCRPGVTGQRCDQCETYHFGFQTEGCGL--CECDPLGSRGFQCD 1003 (1705)
T ss_pred             C--------CCcccccccccccccccccccCC--ceeeecCccccccCccccCcccccccCCcc--eecccCCcccceec
Confidence            1        1233333322    235665555  89999999998876554321      1110  112222    2455


Q ss_pred             cCCCceeeeCCCCCCCCCCCC
Q psy2857         300 NTVPGFNCLCPKGYSGKPDAK  320 (332)
Q Consensus       300 ~~~g~~~C~C~~g~~g~~~~~  320 (332)
                      ...|  +|.|++++.|..+..
T Consensus      1004 ~~~G--~c~c~~~~~g~~c~~ 1022 (1705)
T KOG1836|consen 1004 PEDG--QCPCRPGFEGRRCDQ 1022 (1705)
T ss_pred             ccCC--eeeecCCCCCccccc
Confidence            5455  677888877765544

>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins

Probab=97.58  E-value=0.0001  Score=42.32  Aligned_cols=34  Identities=53%  Similarity=1.134  Sum_probs=29.2

Q ss_pred             cCccCC-CCCCCCCeeeecCCceeeecCCCcccCC
Q psy2857         242 INECQS-NPCGVNATCIDTQGSYSCVCKEHYTGDP  275 (332)
Q Consensus       242 ~~~C~~-~~C~~~~~C~~~~~~~~C~C~~G~~g~~  275 (332)
                      +++|.. .+|.+++.|++..++|.|.|++||.|..
T Consensus         2 ~~~C~~~~~C~~~~~C~~~~~~~~C~C~~g~~g~~   36 (38)
T cd00054           2 IDECASGNPCQNGGTCVNTVGSYRCSCPPGYTGRN   36 (38)
T ss_pred             cccCCCCCCcCCCCEeECCCCCeEeECCCCCcCCc
Confidence            467776 6888889999999999999999999864

Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.

>KOG1226|consensus

Probab=97.54  E-value=0.00044  Score=65.15  Aligned_cols=134  Identities=28%  Similarity=0.656  Sum_probs=86.5

Q ss_pred             EEEecCCceeccc------------CCcCCCC----CCCCCCeeeeCCCCeEeeCCCCCc----cCCCCCCCCcccccCC
Q psy2857           6 LVRILLGVRAIVD------------INECQSN----PCGVNATCIDTQGSYSCVCKEHYT----GDPYQACSDIDECKAL   65 (332)
Q Consensus         6 ~c~c~~g~~~~~~------------~~~C~~~----~C~~~g~C~~~~g~~~C~C~~G~~----g~~~~~C~~~~~c~~~   65 (332)
                      .|+|.+||.|...            .+.|...    +|+.+|.|.=..    |+|.+...    |..++ | +-..|...
T Consensus       479 ~C~C~~G~~G~~CEC~~~~~ss~~~~~~Cr~~~~~~vCSgrG~C~CGq----C~C~~~~~~~i~G~fCE-C-DnfsC~r~  552 (783)
T KOG1226|consen  479 QCRCDEGWLGKKCECSTDELSSSEEEDKCRENSDSPVCSGRGDCVCGQ----CVCHKPDNGKIYGKFCE-C-DNFSCERH  552 (783)
T ss_pred             ceecCCCCCCCcccCCccccCcHhHHhhccCCCCCCCcCCCCcEeCCc----eEecCCCCCceeeeeee-c-cCcccccc
Confidence            6899999999811            1334332    599999998876    99988766    54432 1 11223221


Q ss_pred             -CCCCCCCCceeeCCCCeeeeCCCCCCCCCCCccceeeccCCCCCCC--CccccCCCcccCceecCCCC-ccCCCCeeec
Q psy2857          66 -DKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSS--NFECVNNAECVDGLCYCRPG-FDARGSVCVD  141 (332)
Q Consensus        66 -~~~C~~~~~C~~~~~~~~C~C~~g~~~~~~~~~~c~~~~~~~~c~~--~~~C~~~~~c~~~~c~C~~g-~~~~g~~c~~  141 (332)
                       -..|+.++.|.-.    +|.|.+||+|..+.   |+  .-+..|..  ...|+..+.|.-++|.|.+. |.  |..|..
T Consensus       553 ~g~lC~g~G~C~CG----~CvC~~GwtG~~C~---C~--~std~C~~~~G~iCSGrG~C~Cg~C~C~~~~~s--G~~CE~  621 (783)
T KOG1226|consen  553 KGVLCGGHGRCECG----RCVCNPGWTGSACN---CP--LSTDTCESSDGQICSGRGTCECGRCKCTDPPYS--GEFCEK  621 (783)
T ss_pred             cCcccCCCCeEeCC----cEEcCCCCccCCCC---CC--CCCccccCCCCceeCCCceeeCCceEcCCCCcC--cchhhc
Confidence             2358889999776    79999999999553   21  11223332  34788888888889999865 77  788854


Q ss_pred             CCCCCCCCCCCCCCcee
Q psy2857         142 VDECQLGDPCGPQAQCT  158 (332)
Q Consensus       142 ~~~C~~~~~C~~~~~C~  158 (332)
                      -..|  +.+|.....|+
T Consensus       622 cptc--~~~C~~~~~Cv  636 (783)
T KOG1226|consen  622 CPTC--PDPCAENKSCV  636 (783)
T ss_pred             CCCC--CCcccccccch
Confidence            3334  34566555554

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=97.50  E-value=6.1e-05  Score=42.49  Aligned_cols=29  Identities=38%  Similarity=0.870  Sum_probs=23.3

Q ss_pred             CCCCCCCeeecCCCceeeeCCCCCCCCCCCC
Q psy2857         290 KPCGLRAICENTVPGFNCLCPKGYSGKPDAK  320 (332)
Q Consensus       290 ~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~  320 (332)
                      +.|.  .+|++.+++|+|.|++||+..++.+
T Consensus         6 GgC~--h~C~~~~g~~~C~C~~Gy~L~~D~~   34 (36)
T PF14670_consen    6 GGCS--HICVNTPGSYRCSCPPGYKLAEDGR   34 (36)
T ss_dssp             GGSS--SEEEEETTSEEEE-STTEEE-TTSS
T ss_pred             CCcC--CCCccCCCceEeECCCCCEECcCCC
Confidence            4563  6999999999999999999998765

...

>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins

Probab=97.43  E-value=0.0001  Score=41.68  Aligned_cols=29  Identities=52%  Similarity=1.094  Sum_probs=23.4

Q ss_pred             CCCCCCCeeeecCCceeeecCCCcccCCC
Q psy2857         248 NPCGVNATCIDTQGSYSCVCKEHYTGDPY  276 (332)
Q Consensus       248 ~~C~~~~~C~~~~~~~~C~C~~G~~g~~~  276 (332)
                      ..|..+++|+++.++|.|+|++||.|++.
T Consensus         6 ~~C~~nA~C~~~~~~~~C~C~~Gy~GdG~   34 (36)
T PF12947_consen    6 GGCHPNATCTNTGGSYTCTCKPGYEGDGF   34 (36)
T ss_dssp             GGS-TTCEEEE-TTSEEEEE-CEEECCST
T ss_pred             CCCCCCcEeecCCCCEEeECCCCCccCCc
Confidence            46888999999999999999999999864

; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.

>KOG0994|consensus

Probab=97.37  E-value=0.0016  Score=63.86  Aligned_cols=34  Identities=26%  Similarity=0.734  Sum_probs=22.7

Q ss_pred             eecCCCceEe-eCCCCCccCCC---CccccccCcccce
Q psy2857         157 CTNTPGSFRC-DCVEGYVGAPP---RIKCKDVRWEFNV  190 (332)
Q Consensus       157 C~~~~~~~~C-~C~~G~~g~~~---~~~c~~~~c~~~~  190 (332)
                      |.+...++.| .|..||.|++.   ...|+..+|-.+.
T Consensus       878 CqD~T~G~~CdrCl~GyyGdP~lg~g~~CrPCpCP~gp  915 (1758)
T KOG0994|consen  878 CQDSTTGHSCDRCLDGYYGDPRLGSGIGCRPCPCPDGP  915 (1758)
T ss_pred             ccccccccchhhhhccccCCcccCCCCCCCCCCCCCCC
Confidence            4455566777 79999999864   3467766665443

>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium

Probab=97.23  E-value=9.3e-05  Score=57.55  Aligned_cols=140  Identities=27%  Similarity=0.697  Sum_probs=86.9

Q ss_pred             CCCCCeeeeCCCCeEeeCCCCCccCCCCCCCCcccccC---CCCCCCCCCceeeCC-----CCeeeeCCCCCCCCCCCcc
Q psy2857          27 CGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKA---LDKPCGLRAICENTV-----PGFNCLCPKGYSGKPDAKV   98 (332)
Q Consensus        27 C~~~g~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~c~~---~~~~C~~~~~C~~~~-----~~~~C~C~~g~~~~~~~~~   98 (332)
                      |. +|..+.+...|.|.|.+||......+|+...+|..   ...+|..-+.|++..     ..|.|.|.+||.....   
T Consensus         8 CK-NG~LiQMSNHfEC~Cnegfvl~~EntCE~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~---   83 (197)
T PF06247_consen    8 CK-NGYLIQMSNHFECKCNEGFVLKNENTCEEKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQG---   83 (197)
T ss_dssp             -B-TEEEEEESSEEEEEESTTEEEEETTEEEE----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSS---
T ss_pred             cc-CCEEEEccCceEEEcCCCcEEccccccccceecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeCC---
Confidence            54 67788888899999999999876677877777654   345798889998765     3699999999987654   


Q ss_pred             ceeeccCCCCCCCCccccCCCccc-------CceecCCCCcc-CCCCeeec--CCCCCCCCCCCCCCceecCCCceEeeC
Q psy2857          99 ACEQVDVTSECSSNFECVNNAECV-------DGLCYCRPGFD-ARGSVCVD--VDECQLGDPCGPQAQCTNTPGSFRCDC  168 (332)
Q Consensus        99 ~c~~~~~~~~c~~~~~C~~~~~c~-------~~~c~C~~g~~-~~g~~c~~--~~~C~~~~~C~~~~~C~~~~~~~~C~C  168 (332)
                      .|...    .|.. ..|. .+.|+       ...|+|.-|.. .+...|..  ...|+  -.|..+..|....+-|.|.+
T Consensus        84 vCvp~----~C~~-~~Cg-~GKCI~d~~~~~~~~CSC~IGkV~~dn~kCtk~G~T~C~--LKCk~nE~CK~~~~~Y~C~~  155 (197)
T PF06247_consen   84 VCVPN----KCNN-KDCG-SGKCILDPDNPNNPTCSCNIGKVPDDNKKCTKTGETKCS--LKCKENEECKLVDGYYKCVC  155 (197)
T ss_dssp             SEEEG----GGSS----T-TEEEEEEEGGGSEEEEEE-TEEETTTTTESEEEE----------TTTEEEEEETTEEEEEE
T ss_pred             eEchh----hcCc-eecC-CCeEEecCCCCCCceeEeeeceEeccCCcccCCCcccee--eecCCCcceeeeCcEEEeec
Confidence            23211    1111 1333 23332       23799998887 56777753  34454  46778889999999999999


Q ss_pred             CCCCccCCCC
Q psy2857         169 VEGYVGAPPR  178 (332)
Q Consensus       169 ~~G~~g~~~~  178 (332)
                      ..+|.++...
T Consensus       156 ~~~~~~~~~~  165 (197)
T PF06247_consen  156 KEGFPGDGEG  165 (197)
T ss_dssp             -TT-EEETTT
T ss_pred             CCCCCCCCCc
Confidence            9999886544

Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=97.17  E-value=0.00071  Score=38.07  Aligned_cols=28  Identities=39%  Similarity=1.068  Sum_probs=25.3

Q ss_pred             CCCCCCCCeeecCCCceeeeCCCCCCCC
Q psy2857         289 DKPCGLRAICENTVPGFNCLCPKGYSGK  316 (332)
Q Consensus       289 ~~~C~~~~~C~~~~g~~~C~C~~g~~g~  316 (332)
                      ..+|.+++.|++..++|.|.|+.||.|.
T Consensus         5 ~~~C~~~~~C~~~~~~~~C~C~~g~~g~   32 (36)
T cd00053           5 SNPCSNGGTCVNTPGSYRCVCPPGYTGD   32 (36)
T ss_pred             CCCCCCCCEEecCCCCeEeECCCCCccc
Confidence            3578888999999999999999999988

>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium

Probab=97.11  E-value=0.00096  Score=37.52  Aligned_cols=28  Identities=61%  Similarity=1.280  Sum_probs=25.4

Q ss_pred             CCCCCCCCeeeeCCCCeEeeCCCCCccC
Q psy2857          24 SNPCGVNATCIDTQGSYSCVCKEHYTGD   51 (332)
Q Consensus        24 ~~~C~~~g~C~~~~g~~~C~C~~G~~g~   51 (332)
                      ..+|..++.|++..+.|.|.|+.||.|.
T Consensus         5 ~~~C~~~~~C~~~~~~~~C~C~~g~~g~   32 (36)
T cd00053           5 SNPCSNGGTCVNTPGSYRCVCPPGYTGD   32 (36)
T ss_pred             CCCCCCCCEEecCCCCeEeECCCCCccc
Confidence            5678888999999999999999999986

>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium

Probab=97.05  E-value=0.00082  Score=52.44  Aligned_cols=131  Identities=27%  Similarity=0.751  Sum_probs=76.3

Q ss_pred             ceecCCCCccC-CCCeeecCCCCCC----CCCCCCCCceecCC-----CceEeeCCCCCccCCCCccccccCcccceeec
Q psy2857         124 GLCYCRPGFDA-RGSVCVDVDECQL----GDPCGPQAQCTNTP-----GSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLL  193 (332)
Q Consensus       124 ~~c~C~~g~~~-~g~~c~~~~~C~~----~~~C~~~~~C~~~~-----~~~~C~C~~G~~g~~~~~~c~~~~c~~~~~c~  193 (332)
                      +.|.|.+||-. +...|....+|..    ..+|...++|++..     ..|.|.|.+||.....  .|..          
T Consensus        20 fEC~Cnegfvl~~EntCE~kv~C~~~e~~~K~Cgdya~C~~~~~~~~~~~~~C~C~~gY~~~~~--vCvp----------   87 (197)
T PF06247_consen   20 FECKCNEGFVLKNENTCEEKVECDKLENVNKPCGDYAKCINQANKGEERAYKCDCINGYILKQG--VCVP----------   87 (197)
T ss_dssp             EEEEESTTEEEEETTEEEE----SG-GGTTSEEETTEEEEE-SSTTSSTSEEEEE-TTEEESSS--SEEE----------
T ss_pred             eEEEcCCCcEEccccccccceecCcccccCccccchhhhhcCCCcccceeEEEecccCceeeCC--eEch----------
Confidence            58999999953 3567777667752    35688888998765     5688999999886421  1111          


Q ss_pred             cccCcccccccCCcccccceecccccceecccccEEecccCccccccccCccCCCCCCCCCeeeec---CCceeeecCCC
Q psy2857         194 FYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATCIDT---QGSYSCVCKEH  270 (332)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~C~~~~C~~~~~C~~~---~~~~~C~C~~G  270 (332)
                                                                       ..|....|. .|.|+-.   +....|+|.-|
T Consensus        88 -------------------------------------------------~~C~~~~Cg-~GKCI~d~~~~~~~~CSC~IG  117 (197)
T PF06247_consen   88 -------------------------------------------------NKCNNKDCG-SGKCILDPDNPNNPTCSCNIG  117 (197)
T ss_dssp             -------------------------------------------------GGGSS---T-TEEEEEEEGGGSEEEEEE-TE
T ss_pred             -------------------------------------------------hhcCceecC-CCeEEecCCCCCCceeEeeec
Confidence                                                             133334454 5667532   23458999999


Q ss_pred             cccCCCCccccc--ccccCCCCCCCCCCeeecCCCceeeeCCCCCCCCCCC
Q psy2857         271 YTGDPYQACSDI--DECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDA  319 (332)
Q Consensus       271 ~~g~~~~~C~~~--d~C~~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~  319 (332)
                      +..+....|...  -+|.+   .|..+..|....+-|.|.|.++|.++...
T Consensus       118 kV~~dn~kCtk~G~T~C~L---KCk~nE~CK~~~~~Y~C~~~~~~~~~~~~  165 (197)
T PF06247_consen  118 KVPDDNKKCTKTGETKCSL---KCKENEECKLVDGYYKCVCKEGFPGDGEG  165 (197)
T ss_dssp             EETTTTTESEEEE-----------TTTEEEEEETTEEEEEE-TT-EEETTT
T ss_pred             eEeccCCcccCCCccceee---ecCCCcceeeeCcEEEeecCCCCCCCCCc
Confidence            984444445432  33543   67788999999999999999999877654

Pvs25 and Pvs28 are expressed on the surface of ookinetes. These proteins are potential candidates for vaccine and induce antibodies that block the infectivity of Plasmodium vivax in immunised animals [].; GO: 0009986 cell surface, 0016020 membrane; PDB: 1Z3G_B 1Z1Y_B 1Z27_A.

>smart00181 EGF Epidermal growth factor-like domain

Probab=97.00  E-value=0.0011  Score=37.19  Aligned_cols=26  Identities=42%  Similarity=1.055  Sum_probs=23.5

Q ss_pred             CCCCCCCeeecCCCceeeeCCCCCCCC
Q psy2857         290 KPCGLRAICENTVPGFNCLCPKGYSGK  316 (332)
Q Consensus       290 ~~C~~~~~C~~~~g~~~C~C~~g~~g~  316 (332)
                      .+|.++ +|++..++|.|.|++||.|+
T Consensus         6 ~~C~~~-~C~~~~~~~~C~C~~g~~g~   31 (35)
T smart00181        6 GPCSNG-TCINTPGSYTCSCPPGYTGD   31 (35)
T ss_pred             CCCCCC-EEECCCCCeEeECCCCCccC
Confidence            578877 99999999999999999995

>smart00181 EGF Epidermal growth factor-like domain

Probab=96.94  E-value=0.0017  Score=36.52  Aligned_cols=29  Identities=59%  Similarity=1.300  Sum_probs=24.7

Q ss_pred             CCC-CCCCCCCeeeeCCCCeEeeCCCCCccC
Q psy2857          22 CQS-NPCGVNATCIDTQGSYSCVCKEHYTGD   51 (332)
Q Consensus        22 C~~-~~C~~~g~C~~~~g~~~C~C~~G~~g~   51 (332)
                      |.. .+|..+ .|++..++|.|.|++||.|.
T Consensus         2 C~~~~~C~~~-~C~~~~~~~~C~C~~g~~g~   31 (35)
T smart00181        2 CASGGPCSNG-TCINTPGSYTCSCPPGYTGD   31 (35)
T ss_pred             CCCcCCCCCC-EEECCCCCeEeECCCCCccC
Confidence            445 578877 99999999999999999983

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=96.47  E-value=0.0028  Score=35.71  Aligned_cols=24  Identities=33%  Similarity=0.755  Sum_probs=19.3

Q ss_pred             CCeeeecCCceeeecCCCcccCCC
Q psy2857         253 NATCIDTQGSYSCVCKEHYTGDPY  276 (332)
Q Consensus       253 ~~~C~~~~~~~~C~C~~G~~g~~~  276 (332)
                      ...|++.+++|+|.|++||++...
T Consensus         9 ~h~C~~~~g~~~C~C~~Gy~L~~D   32 (36)
T PF14670_consen    9 SHICVNTPGSYRCSCPPGYKLAED   32 (36)
T ss_dssp             SSEEEEETTSEEEE-STTEEE-TT
T ss_pred             CCCCccCCCceEeECCCCCEECcC
Confidence            468999999999999999998743

...

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=96.16  E-value=0.0063  Score=50.78  Aligned_cols=41  Identities=32%  Similarity=0.691  Sum_probs=35.4

Q ss_pred             cccccccccCCCCCCCCCCeeecCCCceeeeCCCCCCCCCCCC
Q psy2857         278 ACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAK  320 (332)
Q Consensus       278 ~C~~~d~C~~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~  320 (332)
                      .|.++++|....++|.  ..|+++.|+|.|.|+.||++....+
T Consensus       183 ~C~~~~~C~~~~~~c~--~~C~~~~g~~~c~c~~g~~~~~~~~  223 (224)
T cd01475         183 ICVVPDLCATLSHVCQ--QVCISTPGSYLCACTEGYALLEDNK  223 (224)
T ss_pred             cCcCchhhcCCCCCcc--ceEEcCCCCEEeECCCCccCCCCCC
Confidence            5888999988777886  5899999999999999999887654

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=96.10  E-value=0.013  Score=32.08  Aligned_cols=26  Identities=27%  Similarity=0.781  Sum_probs=21.7

Q ss_pred             CCCCCCCeeecCCCceeeeCCCCCCCCC
Q psy2857         290 KPCGLRAICENTVPGFNCLCPKGYSGKP  317 (332)
Q Consensus       290 ~~C~~~~~C~~~~g~~~C~C~~g~~g~~  317 (332)
                      ..|.++|+|+...+  +|+|.+||+|..
T Consensus         6 ~~C~~~G~C~~~~g--~C~C~~g~~G~~   31 (32)
T PF07974_consen    6 NICSGHGTCVSPCG--RCVCDSGYTGPD   31 (32)
T ss_pred             CccCCCCEEeCCCC--EEECCCCCcCCC
Confidence            46888999987644  999999999974

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A

Probab=96.09  E-value=0.0039  Score=26.53  Aligned_cols=13  Identities=31%  Similarity=0.810  Sum_probs=10.0

Q ss_pred             eeecCCCcccCCC
Q psy2857         264 SCVCKEHYTGDPY  276 (332)
Q Consensus       264 ~C~C~~G~~g~~~  276 (332)
                      +|+|++||+|..+
T Consensus         1 ~C~C~~G~~G~~C   13 (13)
T PF12661_consen    1 TCQCPPGWTGPNC   13 (13)
T ss_dssp             EEEE-TTEETTTT
T ss_pred             CccCcCCCcCCCC
Confidence            5899999999753

>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins

Probab=95.99  E-value=0.0091  Score=32.68  Aligned_cols=26  Identities=42%  Similarity=0.953  Sum_probs=21.5

Q ss_pred             CCCCCCCeeeecCCceeeecCCCcccCC
Q psy2857         248 NPCGVNATCIDTQGSYSCVCKEHYTGDP  275 (332)
Q Consensus       248 ~~C~~~~~C~~~~~~~~C~C~~G~~g~~  275 (332)
                      ..|..+++|+...+  +|+|.+||+|..
T Consensus         6 ~~C~~~G~C~~~~g--~C~C~~g~~G~~   31 (32)
T PF07974_consen    6 NICSGHGTCVSPCG--RCVCDSGYTGPD   31 (32)
T ss_pred             CccCCCCEEeCCCC--EEECCCCCcCCC
Confidence            35889999997644  999999999975

The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins

>KOG1836|consensus

Probab=94.33  E-value=0.79  Score=48.93  Aligned_cols=51  Identities=29%  Similarity=0.619  Sum_probs=37.7

Q ss_pred             EecCCceeccc--C-CcCCCCCCCCCCeeeeCC--CCeEee-CCCCCccCCCCCCCC
Q psy2857           8 RILLGVRAIVD--I-NECQSNPCGVNATCIDTQ--GSYSCV-CKEHYTGDPYQACSD   58 (332)
Q Consensus         8 ~c~~g~~~~~~--~-~~C~~~~C~~~g~C~~~~--g~~~C~-C~~G~~g~~~~~C~~   58 (332)
                      +|.+||+|+.+  . +.|.+=+|...+.|..+.  ..+.|. |++||+|..++.|.+
T Consensus       760 ~C~~GfYg~~~~~~~~dC~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gytG~rCe~c~d  816 (1705)
T KOG1836|consen  760 QCVDGFYGLPDLGTSGDCQPCPCPNGGACGQTPEILEVVCKNCPPGYTGLRCEECAD  816 (1705)
T ss_pred             hhcCCCCCccccCCCCCCccCCCCCChhhcCcCcccceecCCCCCCCcccccccCCC
Confidence            47899999922  2 227777788888888774  456797 999999987776654

>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein

Probab=94.10  E-value=0.043  Score=30.80  Aligned_cols=31  Identities=32%  Similarity=0.641  Sum_probs=21.9

Q ss_pred             cCCCCCCCCCeeeecC-CceeeecCCCcccCC
Q psy2857         245 CQSNPCGVNATCIDTQ-GSYSCVCKEHYTGDP  275 (332)
Q Consensus       245 C~~~~C~~~~~C~~~~-~~~~C~C~~G~~g~~  275 (332)
                      |...+|..++.|++.. |++.|.|..||....
T Consensus         2 C~~~~cP~NA~C~~~~dG~eecrCllgyk~~~   33 (37)
T PF12946_consen    2 CIDTKCPANAGCFRYDDGSEECRCLLGYKKVG   33 (37)
T ss_dssp             -SSS---TTEEEEEETTSEEEEEE-TTEEEET
T ss_pred             ccCccCCCCcccEEcCCCCEEEEeeCCccccC
Confidence            4556788899999887 899999999998653

MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.

>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein

Probab=93.06  E-value=0.053  Score=30.42  Aligned_cols=30  Identities=33%  Similarity=0.680  Sum_probs=21.6

Q ss_pred             CCCCCCCCCCeeeeCC-CCeEeeCCCCCccC
Q psy2857          22 CQSNPCGVNATCIDTQ-GSYSCVCKEHYTGD   51 (332)
Q Consensus        22 C~~~~C~~~g~C~~~~-g~~~C~C~~G~~g~   51 (332)
                      |....|..|+.|++.. |++.|.|..||...
T Consensus         2 C~~~~cP~NA~C~~~~dG~eecrCllgyk~~   32 (37)
T PF12946_consen    2 CIDTKCPANAGCFRYDDGSEECRCLLGYKKV   32 (37)
T ss_dssp             -SSS---TTEEEEEETTSEEEEEE-TTEEEE
T ss_pred             ccCccCCCCcccEEcCCCCEEEEeeCCcccc
Confidence            4556788999999986 99999999999864

MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.

>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity

Probab=93.02  E-value=0.099  Score=43.59  Aligned_cols=38  Identities=32%  Similarity=0.493  Sum_probs=29.6

Q ss_pred             cccccCccCCCCCCCCCeeeecCCceeeecCCCcccCC
Q psy2857         238 NRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDP  275 (332)
Q Consensus       238 ~~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~  275 (332)
                      .|.+.++|...+......|.++.|+|.|.|++||++.+
T Consensus       183 ~C~~~~~C~~~~~~c~~~C~~~~g~~~c~c~~g~~~~~  220 (224)
T cd01475         183 ICVVPDLCATLSHVCQQVCISTPGSYLCACTEGYALLE  220 (224)
T ss_pred             cCcCchhhcCCCCCccceEEcCCCCEEeECCCCccCCC
Confidence            45677888654443456899999999999999998754

Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.

>KOG1218|consensus

Probab=91.19  E-value=9.7  Score=33.30  Aligned_cols=97  Identities=29%  Similarity=0.572  Sum_probs=46.7

Q ss_pred             CCeEeeCCCCCccCCCCCCCCcccccCCCCCCCCCCceeeCCCCeeeeCCCCCCCCCCCccceeeccCCCCCCCCccccC
Q psy2857          38 GSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVN  117 (332)
Q Consensus        38 g~~~C~C~~G~~g~~~~~C~~~~~c~~~~~~C~~~~~C~~~~~~~~C~C~~g~~~~~~~~~~c~~~~~~~~c~~~~~C~~  117 (332)
                      .+..|.|.++|+|. ..... .....    .+..  .+.......+|.+..+|.+..+.. .+........|.....|..
T Consensus        13 ~~~~c~c~~~~~g~-~~~~~-~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~c~~-~~~~~~~~~~c~~~~~c~~   83 (316)
T KOG1218|consen   13 GSGQCFCDPGYTGR-LQCEH-QAVTS----ACSG--ICPCEVNSGECGLGYGFVGSVCRI-ECVCGNAGGGCSQPCRCKN   83 (316)
T ss_pred             CCCceecCCCcccc-ccccC-CCCCc----cccc--cCCccCCceeEecccccCCCcccc-ccccCCCCCcccCccccCC
Confidence            35579999999985 11111 11111    1111  111122234778888888775433 2222222334444445555


Q ss_pred             CCcccCceecC-CCCccCCCCeeecCCCC
Q psy2857         118 NAECVDGLCYC-RPGFDARGSVCVDVDEC  145 (332)
Q Consensus       118 ~~~c~~~~c~C-~~g~~~~g~~c~~~~~C  145 (332)
                      ..........+ ..+|.  +..|....++
T Consensus        84 ~~~~~~~~~~~~~~~~~--g~~C~~~~~~  110 (316)
T KOG1218|consen   84 GGTCVSSTGYCHLNGYE--GPQCESPCPC  110 (316)
T ss_pred             CCcccCCCCcccCCCCC--cccccCCCCc
Confidence            55555544455 46665  5666544443

>smart00051 DSL delta serrate ligand

Probab=90.94  E-value=0.5  Score=30.49  Aligned_cols=47  Identities=21%  Similarity=0.415  Sum_probs=30.6

Q ss_pred             ceeeecCCCcccCCCCcccccccccCCCCCCCCCCeeecCCCceeeeCCCCCCCCC
Q psy2857         262 SYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKP  317 (332)
Q Consensus       262 ~~~C~C~~G~~g~~~~~C~~~d~C~~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~  317 (332)
                      .++-.|+++|.|..|.     ..|.. .+....+..|.. .|  .++|++||+|..
T Consensus        16 ~~rv~C~~~~yG~~C~-----~~C~~-~~d~~~~~~Cd~-~G--~~~C~~Gw~G~~   62 (63)
T smart00051       16 QIRVTCDENYYGEGCN-----KFCRP-RDDFFGHYTCDE-NG--NKGCLEGWMGPY   62 (63)
T ss_pred             EEEeeCCCCCcCCccC-----CEeCc-CccccCCccCCc-CC--CEecCCCCcCCC
Confidence            3466899999999874     22322 123444567743 34  789999999864

>smart00051 DSL delta serrate ligand

Probab=90.06  E-value=0.56  Score=30.23  Aligned_cols=46  Identities=15%  Similarity=0.042  Sum_probs=31.5

Q ss_pred             EEEEEecCCceecccCCcCCCCC-CCCCCeeeeCCCCeEeeCCCCCccCC
Q psy2857           4 VVLVRILLGVRAIVDINECQSNP-CGVNATCIDTQGSYSCVCKEHYTGDP   52 (332)
Q Consensus         4 ~~~c~c~~g~~~~~~~~~C~~~~-C~~~g~C~~~~g~~~C~C~~G~~g~~   52 (332)
                      ...-.|.++|.|......|.+.. ...+..|....   .++|.+||+|..
T Consensus        16 ~~rv~C~~~~yG~~C~~~C~~~~d~~~~~~Cd~~G---~~~C~~Gw~G~~   62 (63)
T smart00051       16 QIRVTCDENYYGEGCNKFCRPRDDFFGHYTCDENG---NKGCLEGWMGPY   62 (63)
T ss_pred             EEEeeCCCCCcCCccCCEeCcCccccCCccCCcCC---CEecCCCCcCCC
Confidence            44567789999986556665432 45677775432   688999999864

>KOG1218|consensus

Probab=90.04  E-value=6.2  Score=34.55  Aligned_cols=40  Identities=38%  Similarity=1.000  Sum_probs=23.9

Q ss_pred             ccCceecCCCCccCCCCeeecCCC-CCCCCCCCCCCceecCCC
Q psy2857         121 CVDGLCYCRPGFDARGSVCVDVDE-CQLGDPCGPQAQCTNTPG  162 (332)
Q Consensus       121 c~~~~c~C~~g~~~~g~~c~~~~~-C~~~~~C~~~~~C~~~~~  162 (332)
                      .....|.|.+||.  +..+..... |.....+.+++.|....+
T Consensus       159 ~~~~~c~c~~g~~--g~~~~~~~~~c~~~~~~~~g~~C~~~~~  199 (316)
T KOG1218|consen  159 CKNGICTCQPGFV--GVFCVESCSGCSPLTACENGAKCNRSTG  199 (316)
T ss_pred             CCCCceeccCCcc--cccccccCCCcCCCcccCCCCeeecccc
Confidence            3455788999998  555543322 444455666667765543

>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function

Probab=83.56  E-value=1.5  Score=26.84  Aligned_cols=27  Identities=37%  Similarity=1.046  Sum_probs=16.3

Q ss_pred             CCCCccccCCCcccCceecCCCCccCC
Q psy2857         109 CSSNFECVNNAECVDGLCYCRPGFDAR  135 (332)
Q Consensus       109 c~~~~~C~~~~~c~~~~c~C~~g~~~~  135 (332)
                      |.....|..++.|+.++|.|++||...
T Consensus        22 C~~~~qC~~~s~C~~g~C~C~~g~~~~   48 (52)
T PF01683_consen   22 CESDEQCIGGSVCVNGRCQCPPGYVEV   48 (52)
T ss_pred             CCCcCCCCCcCEEcCCEeECCCCCEec
Confidence            333345556666667777777777543

It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO

>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation

Probab=83.32  E-value=1.1  Score=27.12  Aligned_cols=24  Identities=42%  Similarity=0.873  Sum_probs=16.8

Q ss_pred             eeeecCCceeeecCCCcccCCCCccc
Q psy2857         255 TCIDTQGSYSCVCKEHYTGDPYQACS  280 (332)
Q Consensus       255 ~C~~~~~~~~C~C~~G~~g~~~~~C~  280 (332)
                      .|....+  +|.|+++|+|..++.|.
T Consensus        12 ~C~~~~G--~C~C~~~~~G~~C~~C~   35 (49)
T PF00053_consen   12 TCDPSTG--QCVCKPGTTGPRCDQCK   35 (49)
T ss_dssp             SEEETCE--EESBSTTEESTTS-EE-
T ss_pred             cccCCCC--EEeccccccCCcCcCCC
Confidence            5655444  89999999999876544

They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.

>PF00954 S_locus_glycop: S-locus glycoprotein family; InterPro: IPR000858 In Brassicaceae, self-incompatible plants have a self/non-self recognition system, which involves the inability of flowering plants to achieve self-fertilisation

Probab=81.26  E-value=1.8  Score=31.42  Aligned_cols=33  Identities=30%  Similarity=0.719  Sum_probs=25.0

Q ss_pred             cccccCCCCCCCCCCeeecCCCceeeeCCCCCCCC
Q psy2857         282 IDECKALDKPCGLRAICENTVPGFNCLCPKGYSGK  316 (332)
Q Consensus       282 ~d~C~~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~  316 (332)
                      .|.|+.. ..|+..+.|.. .....|.|++||...
T Consensus        77 ~d~Cd~y-~~CG~~g~C~~-~~~~~C~Cl~GF~P~  109 (110)
T PF00954_consen   77 KDQCDVY-GFCGPNGICNS-NNSPKCSCLPGFEPK  109 (110)
T ss_pred             ccCCCCc-cccCCccEeCC-CCCCceECCCCcCCC
Confidence            4677764 58999999953 345579999999865

This is sporophytically controlled by multiple alleles at a single locus (S). There are a total of 50 different S alleles in Brassica oleracea. S-locus glycoproteins, as well as S-receptor kinases, are in linkage with the S-alleles []. Most of the proteins within this family contain apple-like domain (IPR003609 from INTERPRO), which is predicted to possess protein- and/or carbohydrate-binding functions.; GO: 0048544 recognition of pollen

>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies

Probab=80.12  E-value=2.2  Score=25.94  Aligned_cols=22  Identities=36%  Similarity=0.833  Sum_probs=15.3

Q ss_pred             eeecCCceeeecCCCcccCCCCcc
Q psy2857         256 CIDTQGSYSCVCKEHYTGDPYQAC  279 (332)
Q Consensus       256 C~~~~~~~~C~C~~G~~g~~~~~C  279 (332)
                      |....|  +|.|+++|+|..++.|
T Consensus        14 C~~~~G--~C~C~~~~~G~~C~~C   35 (50)
T cd00055          14 CDPGTG--QCECKPNTTGRRCDRC   35 (50)
T ss_pred             ccCCCC--EEeCCCcCCCCCCCCC
Confidence            544444  8999999998876533

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	332
2vj3_A	135	Human Notch-1 Egfs 11-13 Length = 135		1e-08
2vj3_A	135	Human Notch-1 Egfs 11-13 Length = 135		8e-08
1toz_A	116	Nmr Structure Of The Human Notch-1 Ligand Binding R		3e-08
1toz_A	116	Nmr Structure Of The Human Notch-1 Ligand Binding R		6e-08
1toz_A	116	Nmr Structure Of The Human Notch-1 Ligand Binding R		1e-07
2bo2_A	143	Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune Syst		3e-06
2bo2_A	143	Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune Syst		1e-05
2w86_A	147	Crystal Structure Of Fibrillin-1 Domains Cbegf9hyb2		3e-05
1emn_A	82	Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epide		3e-05
1emn_A	82	Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epide		4e-05
2rhp_A	622	The Thrombospondin-1 Polymorphism Asn700ser Associa		2e-04
3p5c_L	440	The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE		2e-04
3p5c_L	440	The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE		4e-04
2w2m_E	107	Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr Length =		2e-04
2w2m_E	107	Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr Length =		6e-04
3p5b_L	400	The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE		2e-04
3p5b_L	400	The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE		5e-04
1n7d_A	699	Extracellular Domain Of The Ldl Receptor Length = 6		2e-04
1n7d_A	699	Extracellular Domain Of The Ldl Receptor Length = 6		4e-04
2w2n_E	107	Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr		3e-04
2w2n_E	107	Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr		7e-04
3m0c_C	791	The X-Ray Crystal Structure Of Pcsk9 In Complex Wit		3e-04
3m0c_C	791	The X-Ray Crystal Structure Of Pcsk9 In Complex Wit		5e-04
1yo8_A	634	Structure Of The C-Terminal Domain Of Human Thrombo		3e-04
1hz8_A	82	Solution Structure And Backbone Dynamics Of A Conca		5e-04
1hz8_A	82	Solution Structure And Backbone Dynamics Of A Conca		6e-04
3bps_E	83	Pcsk9:egf-a Complex Length = 83		5e-04
3bps_E	83	Pcsk9:egf-a Complex Length = 83		6e-04
1lmj_A	86	Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2		6e-04
1lmj_A	86	Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2		6e-04
1hj7_A	80	Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Ep		6e-04
1hj7_A	80	Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Ep		6e-04
3gcw_E	83	Pcsk9:egfa(H306y) Length = 83		7e-04
3gcw_E	83	Pcsk9:egfa(H306y) Length = 83		7e-04

>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13 Length = 135

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 63/123 (51%), Gaps = 16/123 (13%)
Query: 57  SDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECV 116
            D+DEC     PC     C NT+  F C C +GY+G       CE +DV +EC SN  C 
Sbjct: 3   QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP-----RCE-IDV-NECVSN-PCQ 54
Query: 117 NNAECVDGL----CYCRPGFDARGSVC-VDVDECQLGDPCGPQAQCTNTPGSFRCDCVEG 171
           N+A C+D +    C C PG++  G  C V+ DEC    PC    +C +    F+C+C  G
Sbjct: 55  NDATCLDQIGEFQCICMPGYE--GVHCEVNTDEC-ASSPCLHNGRCLDKINEFQCECPTG 111
Query: 172 YVG 174
           + G
Sbjct: 112 FTG 114

>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13 Length = 135

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 239 RVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAIC 298
            +D+NEC SNPC  +ATC+D  G + C+C   Y G   +   + DEC +   PC     C
Sbjct: 42  EIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEV--NTDECAS--SPCLHNGRC 97
Query: 299 ENTVPGFNCLCPKGYSGK 316
            + +  F C CP G++G 
Sbjct: 98  LDKINEFQCECPTGFTGH 115

>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region Length = 116

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 12  GVRAIVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGL 71
           G R  +D+NEC SNPC  +ATC+D  G + C+C   Y G   +   + DEC +   PC  
Sbjct: 36  GPRCEIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEV--NTDECAS--SPCLH 91
Query: 72  RAICENTVPGFNCLCPKGYSGK 93
              C + +  F C CP G++G 
Sbjct: 92  NGRCLDKINEFQCECPTGFTGH 113

>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region Length = 116

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 63/123 (51%), Gaps = 16/123 (13%)
Query: 57  SDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECV 116
            D+DEC     PC     C NT+  F C C +GY+G       CE +DV +EC SN  C 
Sbjct: 1   QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP-----RCE-IDV-NECVSN-PCQ 52
Query: 117 NNAECVDGL----CYCRPGFDARGSVC-VDVDECQLGDPCGPQAQCTNTPGSFRCDCVEG 171
           N+A C+D +    C C PG++  G  C V+ DEC    PC    +C +    F+C+C  G
Sbjct: 53  NDATCLDQIGEFQCICMPGYE--GVHCEVNTDEC-ASSPCLHNGRCLDKINEFQCECPTG 109
Query: 172 YVG 174
           + G
Sbjct: 110 FTG 112

>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region Length = 116

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 239 RVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAIC 298
            +D+NEC SNPC  +ATC+D  G + C+C   Y G   +   + DEC +   PC     C
Sbjct: 40  EIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCEV--NTDECAS--SPCLHNGRC 95
Query: 299 ENTVPGFNCLCPKGYSGK 316
            + +  F C CP G++G 
Sbjct: 96  LDKINEFQCECPTGFTGH 113

>pdb|2BO2|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System Molecule, In Complex With Calcium. Length = 143

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 48/112 (42%), Gaps = 14/112 (12%)
Query: 9   ILLGVRAIVDINECQS---NPCGVNATCIDTQGSYSCVCKEHY---------TGDPYQAC 56
           I   +    DINEC +     CG  + C +T+GSY CVC   Y           +    C
Sbjct: 34  ITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTC 93
Query: 57  SDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSE 108
            D+DEC +    C    +C NTV  ++C C  G+  KP   +   Q D   E
Sbjct: 94  QDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGW--KPRHGIPNNQKDTVCE 143

>pdb|2BO2|A Chain A, Egf Domains 1,2,5 Of Human Emr2, A 7-Tm Immune System Molecule, In Complex With Calcium. Length = 143

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 12/85 (14%)
Query: 241 DINECQS---NPCGVNATCIDTQGSYSCVCKEHY---------TGDPYQACSDIDECKAL 288
           DINEC +     CG  + C +T+GSY CVC   Y           +    C D+DEC + 
Sbjct: 43  DINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSG 102
Query: 289 DKPCGLRAICENTVPGFNCLCPKGY 313
              C    +C NTV  ++C C  G+
Sbjct: 103 QHQCDSSTVCFNTVGSYSCRCRPGW 127

>pdb|2W86|A Chain A, Crystal Structure Of Fibrillin-1 Domains Cbegf9hyb2cbegf10, Calcium Saturated Form Length = 147

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 32/163 (19%)
Query: 17  VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQA-CSDIDECKALDKPCGLRAIC 75
            DI+EC+S+PC +N  C ++ GS+ C C    T DP +  C +            ++  C
Sbjct: 2   ADIDECESSPC-INGVCKNSPGSFICECSSESTLDPTKTICIET-----------IKGTC 49
Query: 76  ENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLC----YCRPG 131
             TV    C            ++      + S+C S+      + C   LC     C  G
Sbjct: 50  WQTVIDGRC------------EININGATLKSQCCSSLGAAWGSPCT--LCQVDPICGKG 95
Query: 132 FD-ARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYV 173
           +   +G+ C D+DEC++         C NT GSF+C C  G  
Sbjct: 96  YSRIKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMT 138

>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal Growth Factor-Like Domains, Minimized Average Structure Length = 82

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 5/87 (5%)
Query: 15  AIVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAI 74
           + VD++EC+      +  CI+T GSY C C   Y       C D DEC ++  PCG    
Sbjct: 1   SAVDMDECKEPDVCKHGQCINTDGSYRCECPFGYI-LAGNECVDTDEC-SVGNPCG-NGT 57
Query: 75  CENTVPGFNCLCPKGYSGKPDAKVACE 101
           C+N + GF C C +G+  +P   + CE
Sbjct: 58  CKNVIGGFECTCEEGF--EPGPMMTCE 82

>pdb|1EMN|A Chain A, Nmr Study Of A Pair Of Fibrillin Ca2+ Binding Epidermal Growth Factor-Like Domains, Minimized Average Structure Length = 82

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 299
           VD++EC+      +  CI+T GSY C C   Y       C D DEC ++  PCG    C+
Sbjct: 3   VDMDECKEPDVCKHGQCINTDGSYRCECPFGYI-LAGNECVDTDEC-SVGNPCG-NGTCK 59
Query: 300 NTVPGFNCLCPKGYSGKPDAKVACE 324
           N + GF C C +G+  +P   + CE
Sbjct: 60  NVIGGFECTCEEGF--EPGPMMTCE 82

>pdb|2RHP|A Chain A, The Thrombospondin-1 Polymorphism Asn700ser Associated With Cornoary Artery Disease Causes Local And Long-Ranging Changes In Protein Structure Length = 622

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 57/140 (40%), Gaps = 23/140 (16%)
Query: 22  CQSNPCGVNATCID-TQGSYSC-VCKEHYTGDPYQACSDIDECKALDKPCGLRAI---CE 76
           C SNPC   A C     GS+SC  C   + G+    C D+DEC  +   C   +    C 
Sbjct: 3   CLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTH-CEDLDECALVPDICFSTSKVPRCV 61
Query: 77  NTVPGFNCL-CPKGYSGKPDAKVACEQV--------------DVTSECSSNFECVNNAEC 121
           NT PGF+CL CP  Y G     V  E                D T  C  + EC+     
Sbjct: 62  NTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECIYLGHF 121
Query: 122 VDGL--CYCRPGFDARGSVC 139
            D +  C C+ G+   G +C
Sbjct: 122 SDPMYKCECQTGYAGDGLIC 141

>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 440

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 20  NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 79
           NEC  N  G +  C D +  Y C+C + +     + C DIDEC+    P     +C N  
Sbjct: 41  NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ---DPDTCSQLCVNLE 97
Query: 80  PGFNCLCPKGYSGKPDAKVACEQV 103
            G+ C C +G+   P  K AC+ V
Sbjct: 98  GGYKCQCEEGFQLDPHTK-ACKAV 120

>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 440

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 302
           NEC  N  G +  C D +  Y C+C + +     + C DIDEC+    P     +C N  
Sbjct: 41  NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ---DPDTCSQLCVNLE 97
Query: 303 PGFNCLCPKGYSGKPDAK 320
            G+ C C +G+   P  K
Sbjct: 98  GGYKCQCEEGFQLDPHTK 115

>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr Length = 107

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 11  LGVRAIVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCG 70
           L  +  +  NEC  N  G +  C D +  Y C+C + +     + C DIDEC+  D    
Sbjct: 21  LYFQGAMGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT--- 77
Query: 71  LRAICENTVPGFNCLCPKGYSGKPDAKV 98
              +C N   G+ C C +G+   P  K 
Sbjct: 78  CSQLCVNLEGGYKCQCEEGFQLDPHTKA 105

>pdb|2W2M|E Chain E, Wt Pcsk9-Deltac Bound To Wt Egf-A Of Ldlr Length = 107

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 299
           +  NEC  N  G +  C D +  Y C+C + +     + C DIDEC+  D       +C 
Sbjct: 27  MGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT---CSQLCV 83
Query: 300 NTVPGFNCLCPKGYSGKPDAKV 321
           N   G+ C C +G+   P  K 
Sbjct: 84  NLEGGYKCQCEEGFQLDPHTKA 105

>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 400

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 20  NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 79
           NEC  N  G +  C D +  Y C+C + +     + C DIDEC+    P     +C N  
Sbjct: 1   NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ---DPDTCSQLCVNLE 57
Query: 80  PGFNCLCPKGYSGKPDAKVACEQV 103
            G+ C C +G+   P  K AC+ V
Sbjct: 58  GGYKCQCEEGFQLDPHTK-ACKAV 80

>pdb|3P5B|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE RECEPTOR IN AN Extended Conformation Length = 400

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 302
           NEC  N  G +  C D +  Y C+C + +     + C DIDEC+    P     +C N  
Sbjct: 1   NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ---DPDTCSQLCVNLE 57
Query: 303 PGFNCLCPKGYSGKPDAK 320
            G+ C C +G+   P  K
Sbjct: 58  GGYKCQCEEGFQLDPHTK 75

>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor Length = 699

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 20  NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 79
           NEC  N  G +  C D +  Y C+C + +     + C DIDEC+    P     +C N  
Sbjct: 295 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ---DPDTCSQLCVNLE 351
Query: 80  PGFNCLCPKGYSGKPDAKVACEQV 103
            G+ C C +G+   P  K AC+ V
Sbjct: 352 GGYKCQCEEGFQLDPHTK-ACKAV 374

>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor Length = 699

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 302
           NEC  N  G +  C D +  Y C+C + +     + C DIDEC+    P     +C N  
Sbjct: 295 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ---DPDTCSQLCVNLE 351
Query: 303 PGFNCLCPKGYSGKPDAKV 321
            G+ C C +G+   P  K 
Sbjct: 352 GGYKCQCEEGFQLDPHTKA 370

>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr Length = 107

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 11  LGVRAIVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCG 70
           L  +  +  NEC  N  G +  C D +  Y C+C + +     + C DIDEC+  D    
Sbjct: 21  LYFQGAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT--- 77
Query: 71  LRAICENTVPGFNCLCPKGYSGKPDAKV 98
              +C N   G+ C C +G+   P  K 
Sbjct: 78  CSQLCVNLEGGYKCQCEEGFQLDPHTKA 105

>pdb|2W2N|E Chain E, Wt Pcsk9-Deltac Bound To Egf-A H306y Mutant Of Ldlr Length = 107

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 299
           +  NEC  N  G +  C D +  Y C+C + +     + C DIDEC+  D       +C 
Sbjct: 27  MGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT---CSQLCV 83
Query: 300 NTVPGFNCLCPKGYSGKPDAKV 321
           N   G+ C C +G+   P  K 
Sbjct: 84  NLEGGYKCQCEEGFQLDPHTKA 105

>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl Receptor Length = 791

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 20  NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 79
           NEC  N  G +  C D +  Y C+C + +     + C DIDEC+    P     +C N  
Sbjct: 313 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ---DPDTCSQLCVNLE 369
Query: 80  PGFNCLCPKGYSGKPDAKVACEQV 103
            G+ C C +G+   P  K AC+ V
Sbjct: 370 GGYKCQCEEGFQLDPHTK-ACKAV 392

>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The Ldl Receptor Length = 791

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 302
           NEC  N  G +  C D +  Y C+C + +     + C DIDEC+    P     +C N  
Sbjct: 313 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ---DPDTCSQLCVNLE 369
Query: 303 PGFNCLCPKGYSGKPDAKV 321
            G+ C C +G+   P  K 
Sbjct: 370 GGYKCQCEEGFQLDPHTKA 388

>pdb|1YO8|A Chain A, Structure Of The C-Terminal Domain Of Human Thrombospondin-2 Length = 634

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/145 (31%), Positives = 58/145 (40%), Gaps = 23/145 (15%)
Query: 17  VDINECQSNPCGVNATCID-TQGSYSC-VCKEHYTGDPYQACSDIDECKALDKPCGLRAI 74
            D + C SNPC   A C     GS+SC  C   + G+    C D+DEC  +   C   + 
Sbjct: 1   ADPDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTH-CEDLDECALVPDICFSTSK 59
Query: 75  ---CENTVPGFNCL-CPKGYSGKPDAKVACEQV--------------DVTSECSSNFECV 116
              C NT PGF+CL CP  Y G     V  E                D T  C  + EC+
Sbjct: 60  VPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHAECI 119
Query: 117 NNAECVDGL--CYCRPGFDARGSVC 139
                 D    C C+ G+   G +C
Sbjct: 120 YLGHFSDPXYKCECQTGYAGDGLIC 144

>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer Of Egf-Homology Modules Of The Human Low Density Lipoprotein Receptor Length = 82

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 20  NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 79
           NEC  N  G +  C D +  Y C+C + +     + C DIDEC+  D       +C N  
Sbjct: 3   NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT---CSQLCVNLE 59
Query: 80  PGFNCLCPKGYSGKPDAKVACEQV 103
            G+ C C +G+   P  K AC+ V
Sbjct: 60  GGYKCQCEEGFQLDPHTK-ACKAV 82

>pdb|1HZ8|A Chain A, Solution Structure And Backbone Dynamics Of A Concatemer Of Egf-Homology Modules Of The Human Low Density Lipoprotein Receptor Length = 82

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 302
           NEC  N  G +  C D +  Y C+C + +     + C DIDEC+  D       +C N  
Sbjct: 3   NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT---CSQLCVNLE 59
Query: 303 PGFNCLCPKGYSGKPDAKV 321
            G+ C C +G+   P  K 
Sbjct: 60  GGYKCQCEEGFQLDPHTKA 78

>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex Length = 83

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 15 AIVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAI 74
            +  NEC  N  G +  C D +  Y C+C + +     + C DIDEC+  D       +
Sbjct: 1  GAMGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT---CSQL 57
Query: 75 CENTVPGFNCLCPKGYSGKPDAKV 98
          C N   G+ C C +G+   P  K 
Sbjct: 58 CVNLEGGYKCQCEEGFQLDPHTKA 81

>pdb|3BPS|E Chain E, Pcsk9:egf-a Complex Length = 83

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 299
           +  NEC  N  G +  C D +  Y C+C + +     + C DIDEC+  D       +C 
Sbjct: 3   MGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT---CSQLCV 59
Query: 300 NTVPGFNCLCPKGYSGKPDAKV 321
           N   G+ C C +G+   P  K 
Sbjct: 60  NLEGGYKCQCEEGFQLDPHTKA 81

>pdb|1LMJ|A Chain A, Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2+ Binding Epidermal Growth Factor-like Domains Length = 86

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 18 DINECQSNP--CGVNATCIDTQGSYSCVCKEHYTGD--PYQACSDIDECKALDKPCGLRA 73
          DI+EC+ +P  CG    C++T G + C C E Y       + C DIDEC+     C    
Sbjct: 2  DIDECRISPDLCG-RGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLC-RGG 59
Query: 74 ICENTVPGFNCLCPKGYSGKPD 95
          +C NT   + C CP G+   P+
Sbjct: 60 VCHNTEGSYRCECPPGHQLSPN 81

>pdb|1LMJ|A Chain A, Nmr Study Of The Fibrillin-1 Cbegf12-13 Pair Of Ca2+ Binding Epidermal Growth Factor-like Domains Length = 86

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 241 DINECQSNP--CGVNATCIDTQGSYSCVCKEHYTGD--PYQACSDIDECKALDKPCGLRA 296
           DI+EC+ +P  CG    C++T G + C C E Y       + C DIDEC+     C    
Sbjct: 2   DIDECRISPDLCG-RGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLC-RGG 59
Query: 297 ICENTVPGFNCLCPKGYSGKPD 318
           +C NT   + C CP G+   P+
Sbjct: 60  VCHNTEGSYRCECPPGHQLSPN 81

>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal Growth Factor-Like Domains, 20 Structures Length = 80

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 19 INECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENT 78
           NEC  N  G +  C D +  Y C+C + +     + C DIDEC+  D       +C N 
Sbjct: 2  TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT---CSQLCVNL 58
Query: 79 VPGFNCLCPKGYSGKPDAKV 98
            G+ C C +G+   P  K 
Sbjct: 59 EGGYKCQCEEGFQLDPHTKA 78

>pdb|1HJ7|A Chain A, Nmr Study Of A Pair Of Ldl Receptor Ca2+ Binding Epidermal Growth Factor-Like Domains, 20 Structures Length = 80

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 242 INECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENT 301
            NEC  N  G +  C D +  Y C+C + +     + C DIDEC+  D       +C N 
Sbjct: 2   TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT---CSQLCVNL 58
Query: 302 VPGFNCLCPKGYSGKPDAKV 321
             G+ C C +G+   P  K 
Sbjct: 59  EGGYKCQCEEGFQLDPHTKA 78

>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y) Length = 83

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 15 AIVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAI 74
            +  NEC  N  G +  C D +  Y C+C + +     + C DIDEC+  D       +
Sbjct: 1  GAMGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT---CSQL 57
Query: 75 CENTVPGFNCLCPKGYSGKPDAKV 98
          C N   G+ C C +G+   P  K 
Sbjct: 58 CVNLEGGYKCQCEEGFQLDPHTKA 81

>pdb|3GCW|E Chain E, Pcsk9:egfa(H306y) Length = 83

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 299
           +  NEC  N  G +  C D +  Y C+C + +     + C DIDEC+  D       +C 
Sbjct: 3   MGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQDPDT---CSQLCV 59
Query: 300 NTVPGFNCLCPKGYSGKPDAKV 321
           N   G+ C C +G+   P  K 
Sbjct: 60  NLEGGYKCQCEEGFQLDPHTKA 81

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	332
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	5e-33
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	4e-15
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	3e-14
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	1e-12
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	5e-07
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	2e-26
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	7e-16
2bou_A	143	EGF-like module containing mucin-like hormone rece	1e-23
2bou_A	143	EGF-like module containing mucin-like hormone rece	2e-15
2bou_A	143	EGF-like module containing mucin-like hormone rece	2e-15
2bou_A	143	EGF-like module containing mucin-like hormone rece	3e-11
2bou_A	143	EGF-like module containing mucin-like hormone rece	9e-08
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	7e-20
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	1e-18
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	7e-14
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	7e-14
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	1e-12
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	2e-07
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	2e-07
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	4e-05
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	1e-04
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	3e-18
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	3e-13
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	9e-11
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	2e-08
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	4e-18
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	1e-14
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	3e-11
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	4e-11
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	5e-09
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	1e-08
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	9e-05
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	9e-18
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	1e-17
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	8e-14
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	3e-08
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	3e-07
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	3e-07
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	7e-17
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	2e-10
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	1e-09
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	3e-08
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	6e-07
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	8e-17
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	3e-09
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	3e-09
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	1e-07
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	6e-16
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	6e-12
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	6e-12
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	8e-08
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	2e-15
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	2e-15
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	9e-14
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	5e-09
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	6e-05
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	6e-05
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	1e-04
2vh0_B	134	Activated factor XA light chain; serine protease,	1e-12
2vh0_B	134	Activated factor XA light chain; serine protease,	6e-12
2vh0_B	134	Activated factor XA light chain; serine protease,	7e-12
2vh0_B	134	Activated factor XA light chain; serine protease,	2e-11
2vh0_B	134	Activated factor XA light chain; serine protease,	4e-06
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	3e-12
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	4e-12
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	3e-09
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	1e-08
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	2e-06
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	3e-06
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	3e-06
1aut_L	114	Activated protein C; serine proteinase, plasma cal	1e-11
1aut_L	114	Activated protein C; serine proteinase, plasma cal	1e-11
1aut_L	114	Activated protein C; serine proteinase, plasma cal	6e-10
1aut_L	114	Activated protein C; serine proteinase, plasma cal	6e-06
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	2e-11
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	2e-11
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	2e-10
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	2e-11
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	7e-11
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	4e-11
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	8e-11
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	6e-10
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	1e-06
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	4e-04
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	5e-11
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	2e-06
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	2e-06
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	3e-06
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	1e-10
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	1e-10
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	2e-05
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	2e-04
3v65_B	386	Low-density lipoprotein receptor-related protein;	2e-10
3v65_B	386	Low-density lipoprotein receptor-related protein;	2e-09
3v65_B	386	Low-density lipoprotein receptor-related protein;	4e-07
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	1e-09
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	8e-09
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	3e-06
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	2e-05
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	3e-09
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	2e-08
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	6e-07
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	2e-07
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	2e-07
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	3e-07
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	5e-05
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	5e-04
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	6e-07
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	6e-06
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	6e-06
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	2e-04
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	8e-06
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	7e-05
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	7e-05
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	7e-05
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	4e-04
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	2e-04
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	5e-04
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	5e-04
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	6e-04

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score =  119 bits (299), Expect = 5e-33
 Identities = 40/171 (23%), Positives = 56/171 (32%), Gaps = 18/171 (10%)

Query: 18  DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQ-ACSDIDECKALDKPCGLRAICE 76
           D+NEC      ++  C++T GSY C C   +  +P +  C D          C L     
Sbjct: 2   DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSG-----NCYLDIRPR 56

Query: 77  NTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDG----LCYCRPGF 132
                  C    G      +   C  +    +      C             LC    GF
Sbjct: 57  GDNGDTACSNEIGVGVSKASC--CCSLG---KAWGT-PCEMCPAVNTSEYKILCPGGEGF 110

Query: 133 --DARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKC 181
             +    +  D+DECQ         +C NT GSF+C C  GY        C
Sbjct: 111 RPNPITVILEDIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 161

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 70.9 bits (174), Expect = 4e-15
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 6/81 (7%)

Query: 241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQ-ACSDIDECKALDKPCGLRAICE 299
           D+NEC      ++  C++T GSY C C   +  +P +  C D          C L     
Sbjct: 2   DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSG-----NCYLDIRPR 56

Query: 300 NTVPGFNCLCPKGYSGKPDAK 320
                  C    G      + 
Sbjct: 57  GDNGDTACSNEIGVGVSKASC 77

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 68.5 bits (168), Expect = 3e-14
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 2/79 (2%)

Query: 241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQ-ACSDIDECKALDKPCGLRAICE 299
            + +    PC +      ++    C   E +  +P      DIDEC+ L   C     C 
Sbjct: 80  SLGKAWGTPCEMCPAVNTSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQ-GGKCI 138

Query: 300 NTVPGFNCLCPKGYSGKPD 318
           NT   F C CP GY    D
Sbjct: 139 NTFGSFQCRCPTGYYLNED 157

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 64.3 bits (157), Expect = 1e-12
 Identities = 11/79 (13%), Positives = 21/79 (26%), Gaps = 5/79 (6%)

Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 299
           VD        C ++       G  +C  +          C  + +      PC +     
Sbjct: 42  VDTRSG---NCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKA--WGTPCEMCPAVN 96

Query: 300 NTVPGFNCLCPKGYSGKPD 318
            +     C   +G+   P 
Sbjct: 97  TSEYKILCPGGEGFRPNPI 115

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162

 Score = 47.7 bits (114), Expect = 5e-07
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 141 DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVR 185
           DV+EC     C     C NTPGS+ CDC   +   P R+ C D R
Sbjct: 2   DVNECLDPTTCI-SGNCVNTPGSYICDCPPDFELNPTRVGCVDTR 45

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score =  101 bits (253), Expect = 2e-26
 Identities = 42/168 (25%), Positives = 62/168 (36%), Gaps = 28/168 (16%)

Query: 18  DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQ-ACSDIDECKALDKPCGLRAICE 76
           DI+EC+S+PC  N  C ++ GS+ C C    T DP +  C +  +             C 
Sbjct: 3   DIDECESSPCI-NGVCKNSPGSFICECSSESTLDPTKTICIETIKG-----------TCW 50

Query: 77  NTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDG--LCYCRPGFD- 133
            TV    C      +                +C S+      + C        C  G+  
Sbjct: 51  QTVIDGRCEININGATLKS------------QCCSSLGAAWGSPCTLCQVDPICGKGYSR 98

Query: 134 ARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKC 181
            +G+ C D+DEC++         C NT GSF+C C  G         C
Sbjct: 99  IKGTQCEDIDECEVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGRIC 146

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Length = 147

 Score = 72.8 bits (179), Expect = 7e-16
 Identities = 36/180 (20%), Positives = 55/180 (30%), Gaps = 38/180 (21%)

Query: 141 DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYETDYL 200
           D+DEC+          C N+PGSF C+C       P +  C +            +    
Sbjct: 3   DIDECESS--PCINGVCKNSPGSFICECSSESTLDPTKTICIETI----------KGTCW 50

Query: 201 HSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATCIDTQ 260
            +V     +I                         N+N   +     +  G       T 
Sbjct: 51  QTVIDGRCEI-------------------------NINGATLKSQCCSSLGAAWGSPCTL 85

Query: 261 GSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAK 320
                +C + Y+      C DIDEC  +        +C NT   F C CP G +     +
Sbjct: 86  CQVDPICGKGYSRIKGTQCEDIDEC-EVFPGVCKNGLCVNTRGSFKCQCPSGMTLDATGR 144

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143

 Score = 93.3 bits (232), Expect = 1e-23
 Identities = 41/175 (23%), Positives = 61/175 (34%), Gaps = 44/175 (25%)

Query: 18  DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGD------PYQACSDIDECKALDK-PCG 70
           D   C +  C  +++C+    + +C C   ++        P + C DI+EC  L K  CG
Sbjct: 1   DSRGC-ARWCPQDSSCV---NATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCG 56

Query: 71  LRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRP 130
             + C NT   ++C+C  GY     AK                                 
Sbjct: 57  KFSDCWNTEGSYDCVCSPGYEPVSGAK--------------------------------T 84

Query: 131 GFDARGSVCVDVDECQLG-DPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDV 184
             +   + C DVDEC  G   C     C NT GS+ C C  G+         +  
Sbjct: 85  FKNESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKD 139

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143

 Score = 71.4 bits (175), Expect = 2e-15
 Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 12/96 (12%)

Query: 17  VDINECQS---NPCGVNATCIDTQGSYSCVCKEHYTGDPYQA---------CSDIDECKA 64
            DINEC +     CG  + C +T+GSY CVC   Y                C D+DEC +
Sbjct: 42  DDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSS 101

Query: 65  LDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVAC 100
               C    +C NTV  ++C C  G+  +       
Sbjct: 102 GQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQ 137

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143

 Score = 71.4 bits (175), Expect = 2e-15
 Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 12/96 (12%)

Query: 240 VDINECQS---NPCGVNATCIDTQGSYSCVCKEHYTGDPYQA---------CSDIDECKA 287
            DINEC +     CG  + C +T+GSY CVC   Y                C D+DEC +
Sbjct: 42  DDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSS 101

Query: 288 LDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVAC 323
               C    +C NTV  ++C C  G+  +       
Sbjct: 102 GQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQ 137

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143

 Score = 59.4 bits (144), Expect = 3e-11
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 11/87 (12%)

Query: 241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGD------PYQACSDIDECKALDK-PCG 293
           D   C +  C  +++C+    + +C C   ++        P + C DI+EC  L K  CG
Sbjct: 1   DSRGC-ARWCPQDSSCV---NATACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCG 56

Query: 294 LRAICENTVPGFNCLCPKGYSGKPDAK 320
             + C NT   ++C+C  GY     AK
Sbjct: 57  KFSDCWNTEGSYDCVCSPGYEPVSGAK 83

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143

 Score = 49.8 bits (119), Expect = 9e-08
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 3/50 (6%)

Query: 240 VDINECQSNP--CGVNATCIDTQGSYSCVCKEHYTGDPYQ-ACSDIDECK 286
            D++EC S    C  +  C +T GSYSC C+  +              C+
Sbjct: 94  QDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRHGIPNNQKDTVCE 143

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 83.4 bits (207), Expect = 7e-20
 Identities = 48/142 (33%), Positives = 68/142 (47%), Gaps = 24/142 (16%)

Query: 18  DINECQ--SNPCGVNATCIDTQGSYSCVCKEHYTGDPYQAC-SDIDECKALDKPCGLRAI 74
           D++EC   +NPC     CI+T GS+ C C + YTG     C  D++EC  +  PC   A 
Sbjct: 4   DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTG---PRCEIDVNEC--VSNPCQNDAT 58

Query: 75  CENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGL----CYCRP 130
           C + +  F C+C  GY G       CE    T EC+S+  C++N  C+D +    C C  
Sbjct: 59  CLDQIGEFQCICMPGYEGV-----HCEV--NTDECASS-PCLHNGRCLDKINEFQCECPT 110

Query: 131 GFDARGSVC-VDVDECQLGDPC 151
           GF   G +C VD+         
Sbjct: 111 GF--TGHLCQVDLHHIL-DAQK 129

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 80.0 bits (198), Expect = 1e-18
 Identities = 44/125 (35%), Positives = 61/125 (48%), Gaps = 16/125 (12%)

Query: 55  ACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFE 114
           +  D+DEC     PC     C NT+  F C C +GY+G       CE     +EC SN  
Sbjct: 1   SAQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP-----RCEI--DVNECVSN-P 52

Query: 115 CVNNAECVDGL----CYCRPGFDARGSVC-VDVDECQLGDPCGPQAQCTNTPGSFRCDCV 169
           C N+A C+D +    C C PG++  G  C V+ DEC    PC    +C +    F+C+C 
Sbjct: 53  CQNDATCLDQIGEFQCICMPGYE--GVHCEVNTDECA-SSPCLHNGRCLDKINEFQCECP 109

Query: 170 EGYVG 174
            G+ G
Sbjct: 110 TGFTG 114

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 66.9 bits (164), Expect = 7e-14
 Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 4/77 (5%)

Query: 17  VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 76
           +D+NEC SNPC  +ATC+D  G + C+C   Y G   +   + DEC     PC     C 
Sbjct: 43  IDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCE--VNTDEC--ASSPCLHNGRCL 98

Query: 77  NTVPGFNCLCPKGYSGK 93
           + +  F C CP G++G 
Sbjct: 99  DKINEFQCECPTGFTGH 115

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 66.9 bits (164), Expect = 7e-14
 Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 4/77 (5%)

Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 299
           +D+NEC SNPC  +ATC+D  G + C+C   Y G   +   + DEC     PC     C 
Sbjct: 43  IDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCE--VNTDEC--ASSPCLHNGRCL 98

Query: 300 NTVPGFNCLCPKGYSGK 316
           + +  F C CP G++G 
Sbjct: 99  DKINEFQCECPTGFTGH 115

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 63.4 bits (155), Expect = 1e-12
 Identities = 30/79 (37%), Positives = 42/79 (53%), Gaps = 8/79 (10%)

Query: 241 DINECQ--SNPCGVNATCIDTQGSYSCVCKEHYTGDPYQAC-SDIDECKALDKPCGLRAI 297
           D++EC   +NPC     CI+T GS+ C C + YTG     C  D++EC  +  PC   A 
Sbjct: 4   DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTG---PRCEIDVNEC--VSNPCQNDAT 58

Query: 298 CENTVPGFNCLCPKGYSGK 316
           C + +  F C+C  GY G 
Sbjct: 59  CLDQIGEFQCICMPGYEGV 77

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 17  VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACS-DIDECKALDKPC 69
           V+ +EC S+PC  N  C+D    + C C   +TG     C  D+     LD   
Sbjct: 81  VNTDECASSPCLHNGRCLDKINEFQCECPTGFTGH---LCQVDLHHI--LDAQK 129

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACS-DIDECKALDKPC 292
           V+ +EC S+PC  N  C+D    + C C   +TG     C  D+     LD   
Sbjct: 81  VNTDECASSPCLHNGRCLDKINEFQCECPTGFTGH---LCQVDLHHI--LDAQK 129

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 41.8 bits (99), Expect = 4e-05
 Identities = 15/39 (38%), Positives = 20/39 (51%)

Query: 278 ACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGK 316
           +  D+DEC     PC     C NT+  F C C +GY+G 
Sbjct: 1   SAQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP 39

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Length = 135

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 20/38 (52%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 139 CVDVDECQLG-DPCGPQAQCTNTPGSFRCDCVEGYVGA 175
             DVDEC LG +PC    +C NT GSF C C++GY G 
Sbjct: 2   AQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP 39

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* Length = 634

 Score = 84.7 bits (209), Expect = 3e-18
 Identities = 42/168 (25%), Positives = 55/168 (32%), Gaps = 41/168 (24%)

Query: 18  DINECQSNPCGVNATCIDT-QGSYSC-VCKEHYTGDPYQACSDIDECKA---LDKPCGLR 72
           D + C SNPC   A C     GS+SC  C   + G+    C D+DEC     +       
Sbjct: 2   DPDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTH-CEDLDECALVPDICFSTSKV 60

Query: 73  AICENTVPGFNCL-CPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPG 131
             C NT PGF+CL CP  Y G                                       
Sbjct: 61  PRCVNTQPGFHCLPCPPRYRGNQPV-----------------------------GVGLEA 91

Query: 132 FDARGSVCVDVDECQLG-DPCGPQAQCTNTP----GSFRCDCVEGYVG 174
                 VC   + C+     C   A+C          ++C+C  GY G
Sbjct: 92  AKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAG 139

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* Length = 634

 Score = 69.3 bits (169), Expect = 3e-13
 Identities = 34/94 (36%), Positives = 41/94 (43%), Gaps = 7/94 (7%)

Query: 241 DINECQSNPCGVNATCIDT-QGSYSC-VCKEHYTGDPYQACSDIDECKA---LDKPCGLR 295
           D + C SNPC   A C     GS+SC  C   + G+    C D+DEC     +       
Sbjct: 2   DPDGCLSNPCFPGAQCSSFPDGSWSCGFCPVGFLGNGTH-CEDLDECALVPDICFSTSKV 60

Query: 296 AICENTVPGFNCL-CPKGYSGKPDAKVACEQEKA 328
             C NT PGF+CL CP  Y G     V  E  K 
Sbjct: 61  PRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKT 94

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* Length = 634

 Score = 62.0 bits (150), Expect = 9e-11
 Identities = 37/167 (22%), Positives = 53/167 (31%), Gaps = 27/167 (16%)

Query: 17  VDINECQSN-----PCGVNATCIDTQGSYSC-VCKEHYTGDP------------YQACSD 58
            D++EC               C++TQ  + C  C   Y G+              Q C  
Sbjct: 42  EDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEP 101

Query: 59  IDECKALDKPCGLRAICEN----TVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFE 114
            + CK     C   A C      + P + C C  GY+G  D  +  E  D+    + N  
Sbjct: 102 ENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAG--DGLICGEDSDLDGWPNLNLV 159

Query: 115 CVNNAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTP 161
           C  NA        C    +   S   D D+  +GD C          
Sbjct: 160 CATNATYHCIKDNCPHLPN---SGQEDFDKDGIGDACDDDDDNDGVT 203

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* Length = 634

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 49/272 (18%), Positives = 70/272 (25%), Gaps = 102/272 (37%)

Query: 57  SDIDECKALDKPCGLRAICENTVPG-FNCL-CPKGYSGKPDAKVACEQVDVTSECSSNFE 114
           +D D C  L  PC   A C +   G ++C  CP G+ G                      
Sbjct: 1   ADPDGC--LSNPCFPGAQCSSFPDGSWSCGFCPVGFLGN--------------------- 37

Query: 115 CVNNAECVDGLCYCRPGFDARGSVCVDVDECQLG----DPCGPQAQCTNTPGSFRCD-CV 169
                                G+ C D+DEC L            +C NT   F C  C 
Sbjct: 38  ---------------------GTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCP 76

Query: 170 EGYVGAPPRIKCKDVRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFV 229
             Y G  P     +                                              
Sbjct: 77  PRYRGNQPVGVGLE---------------------------------------------A 91

Query: 230 IEDAKRNLNRVDINECQSNPCGVNATCI----DTQGSYSCVCKEHYTGDPYQAC--SDID 283
            +  K+     +  + +++ C  +A CI     +   Y C C+  Y GD       SD+D
Sbjct: 92  AKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGLICGEDSDLD 151

Query: 284 ECKALDKPCGLRAICENTVPGFNCLCPKGYSG 315
               L+  C   A           L   G   
Sbjct: 152 GWPNLNLVCATNATYHCIKDNCPHLPNSGQED 183

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 80.2 bits (198), Expect = 4e-18
 Identities = 25/161 (15%), Positives = 37/161 (22%), Gaps = 16/161 (9%)

Query: 17  VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 76
            D ++C+++PC     C D  G Y+C C E + G           C            C 
Sbjct: 40  KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK-NCELFTRKLC--SLDNGDCDQFCH 96

Query: 77  NTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGL----CYCRPGF 132
                  C C +GY+   + K                 C                   G 
Sbjct: 97  EEQNSVVCSCARGYTLADNGK-------ACIPTGPY-PCGKQTLERRKRSVAQATSSSGE 148

Query: 133 DARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYV 173
                     D   L DP        +   +          
Sbjct: 149 APDSITWKPYDAADL-DPTENPFDLLDFNQTQPERGDNNLT 188

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 70.6 bits (173), Expect = 1e-14
 Identities = 27/160 (16%), Positives = 43/160 (26%), Gaps = 24/160 (15%)

Query: 20  NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 79
            EC    C                  +      +    D D+C     PC  +  C++ +
Sbjct: 10  RECMEETCSYEEAR-----EVFEDSDKTNEF--WNKYKDGDQC--ETSPCQNQGKCKDGL 60

Query: 80  PGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGL----CYCRPGFDAR 135
             + C C +G+ GK      CE       CS +     +  C +      C C  G+   
Sbjct: 61  GEYTCTCLEGFEGK-----NCEL-FTRKLCSLD-NGDCDQFCHEEQNSVVCSCARGY--T 111

Query: 136 GSVC-VDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
            +             PCG Q          +     G   
Sbjct: 112 LADNGKACIPT-GPYPCGKQTLERRKRSVAQATSSSGEAP 150

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 60.5 bits (147), Expect = 3e-11
 Identities = 14/108 (12%), Positives = 24/108 (22%), Gaps = 11/108 (10%)

Query: 16  IVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAIC 75
           +     C  +    +  C + Q S  C C   YT                  PCG + + 
Sbjct: 78  LFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNG--KACIPT--GPYPCGKQTLE 133

Query: 76  ENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVD 123
                        G +                    +    N  + +D
Sbjct: 134 RRKRSVAQATSSSGEAPDS-----ITWKPY-DAADLD-PTENPFDLLD 174

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 60.5 bits (147), Expect = 4e-11
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 3/79 (3%)

Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 299
            D ++C+++PC     C D  G Y+C C E + G           C            C 
Sbjct: 40  KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK-NCELFTRKLC--SLDNGDCDQFCH 96

Query: 300 NTVPGFNCLCPKGYSGKPD 318
                  C C +GY+   +
Sbjct: 97  EEQNSVVCSCARGYTLADN 115

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 54.4 bits (131), Expect = 5e-09
 Identities = 13/81 (16%), Positives = 20/81 (24%), Gaps = 4/81 (4%)

Query: 235 RNLNRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGL 294
           +N        C  +    +  C + Q S  C C   YT                  PCG 
Sbjct: 74  KNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLADNG--KACIPT--GPYPCGK 129

Query: 295 RAICENTVPGFNCLCPKGYSG 315
           + +              G + 
Sbjct: 130 QTLERRKRSVAQATSSSGEAP 150

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 53.6 bits (129), Expect = 1e-08
 Identities = 25/116 (21%), Positives = 35/116 (30%), Gaps = 15/116 (12%)

Query: 65  LDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDG 124
           L++ C                  K            +  D   +C ++  C N  +C DG
Sbjct: 8   LERECMEETCSYEEAREVFEDSDKTNEFWN----KYKDGD---QCETS-PCQNQGKCKDG 59

Query: 125 L----CYCRPGFDARGSVC-VDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGA 175
           L    C C  GF+  G  C +   +    D       C     S  C C  GY  A
Sbjct: 60  LGEYTCTCLEGFE--GKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLA 113

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195

 Score = 41.7 bits (98), Expect = 9e-05
 Identities = 14/74 (18%), Positives = 24/74 (32%), Gaps = 9/74 (12%)

Query: 243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 302
            EC    C                  +      +    D D+C     PC  +  C++ +
Sbjct: 10  RECMEETCSYEEAR-----EVFEDSDKTNEF--WNKYKDGDQC--ETSPCQNQGKCKDGL 60

Query: 303 PGFNCLCPKGYSGK 316
             + C C +G+ GK
Sbjct: 61  GEYTCTCLEGFEGK 74

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 76.1 bits (188), Expect = 9e-18
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 238 NRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAI 297
           + VD++EC+      +  CI+T GSY C C   Y     + C D DEC            
Sbjct: 1   SAVDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNE-CVDTDEC--SVGNPCGNGT 57

Query: 298 CENTVPGFNCLCPKGYSGKPD 318
           C+N + GF C C +G+   P 
Sbjct: 58  CKNVIGGFECTCEEGFEPGPM 78

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 75.3 bits (186), Expect = 1e-17
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 76
          VD++EC+      +  CI+T GSY C C   Y     + C D DEC            C+
Sbjct: 3  VDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAGNE-CVDTDEC--SVGNPCGNGTCK 59

Query: 77 NTVPGFNCLCPKGYSGKPD 95
          N + GF C C +G+   P 
Sbjct: 60 NVIGGFECTCEEGFEPGPM 78

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 64.9 bits (159), Expect = 8e-14
 Identities = 32/122 (26%), Positives = 40/122 (32%), Gaps = 45/122 (36%)

Query: 55  ACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFE 114
           +  D+DEC   +        C NT   + C CP GY                        
Sbjct: 1   SAVDMDEC--KEPDVCKHGQCINTDGSYRCECPFGYIL---------------------- 36

Query: 115 CVNNAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
                                G+ CVD DEC +G+PCG    C N  G F C C EG+  
Sbjct: 37  --------------------AGNECVDTDECSVGNPCG-NGTCKNVIGGFECTCEEGFEP 75

Query: 175 AP 176
            P
Sbjct: 76  GP 77

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 49.5 bits (119), Expect = 3e-08
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 139 CVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDV 184
            VD+DEC+  D C    QC NT GS+RC+C  GY+ A    +C D 
Sbjct: 2   AVDMDECKEPDVC-KHGQCINTDGSYRCECPFGYILAG--NECVDT 44

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 46.4 bits (111), Expect = 3e-07
 Identities = 13/40 (32%), Positives = 18/40 (45%)

Query: 17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQAC 56
          VD +EC       N TC +  G + C C+E +   P   C
Sbjct: 42 VDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEPGPMMTC 81

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Length = 82

 Score = 46.4 bits (111), Expect = 3e-07
 Identities = 13/40 (32%), Positives = 18/40 (45%)

Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQAC 279
           VD +EC       N TC +  G + C C+E +   P   C
Sbjct: 42  VDTDECSVGNPCGNGTCKNVIGGFECTCEEGFEPGPMMTC 81

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A Length = 186

 Score = 76.6 bits (187), Expect = 7e-17
 Identities = 33/179 (18%), Positives = 49/179 (27%), Gaps = 11/179 (6%)

Query: 17  VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDEC--KALDKPCGLRAI 74
            + +    +    N   +     + C+C E         C + +EC  + L   CG    
Sbjct: 2   AEASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQ 61

Query: 75  C-----ENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCR 129
           C        V  + C C +GY+   D  V           S        +E     C C 
Sbjct: 62  CIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQSAGCSCA 121

Query: 130 PGFDARGS---VCVDVDECQLGD-PCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDV 184
            G          C    E             C N  G + C C+EG+        C   
Sbjct: 122 IGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVCLGP 180

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A Length = 186

 Score = 58.5 bits (140), Expect = 2e-10
 Identities = 23/130 (17%), Positives = 35/130 (26%), Gaps = 4/130 (3%)

Query: 21  ECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVP 80
            C      +          Y C C E YT        D+ +     +         + + 
Sbjct: 55  ACGEFGQCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQYXNCGESGECIVEYLSEIQ 114

Query: 81  GFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDG--LCYCRPGF--DARG 136
              C C  G    P+ +  C     T+              V+G   C C  GF  D   
Sbjct: 115 SAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEX 174

Query: 137 SVCVDVDECQ 146
           +VC+      
Sbjct: 175 NVCLGPHHHH 184

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A Length = 186

 Score = 56.2 bits (134), Expect = 1e-09
 Identities = 21/183 (11%), Positives = 41/183 (22%), Gaps = 11/183 (6%)

Query: 141 DVDECQLG-DPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYETDY 199
           + +   +  D      Q       F C C EG V        +                 
Sbjct: 1   EAEASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFG 60

Query: 200 LHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATCIDT 259
                 D + +          ++      V++  +                      +  
Sbjct: 61  QCIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQ--------YXNCGESGECIVEYLSE 112

Query: 260 QGSYSCVCKEHYTGDPYQA--CSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKP 317
             S  C C      +P     C+   E            +C N    + C C +G++   
Sbjct: 113 IQSAGCSCAIGXVPNPEDEXXCTXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDX 172

Query: 318 DAK 320
           +  
Sbjct: 173 EXN 175

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A Length = 186

 Score = 52.0 bits (123), Expect = 3e-08
 Identities = 29/229 (12%), Positives = 51/229 (22%), Gaps = 47/229 (20%)

Query: 58  DIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVN 117
           + +                     F C+C +G     +    CE+ +     +    C  
Sbjct: 1   EAEASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSEN--TCEEXNECXXETLGXACGE 58

Query: 118 NAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPP 177
             +C++                                        + C C+EGY     
Sbjct: 59  FGQCIEN-------------------------------PDPAQVNMYXCGCIEGYTLXED 87

Query: 178 RIKCKDVRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNL 237
                                Y +   S    +  +    S   S  +      + +   
Sbjct: 88  TCVLDVC-------------QYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXC 134

Query: 238 NRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDP-YQACSDIDEC 285
                  CQ      N  C + +G Y C C E +T D     C      
Sbjct: 135 TXTGETACQLXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXNVCLGPHHH 183

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A Length = 186

 Score = 48.1 bits (113), Expect = 6e-07
 Identities = 18/94 (19%), Positives = 31/94 (32%), Gaps = 7/94 (7%)

Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDEC--KALDKPCGLRAI 297
            + +    +    N   +     + C+C E         C + +EC  + L   CG    
Sbjct: 2   AEASAVTVDTICXNGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQ 61

Query: 298 C-----ENTVPGFNCLCPKGYSGKPDAKVACEQE 326
           C        V  + C C +GY+   D  V    +
Sbjct: 62  CIENPDPAQVNMYXCGCIEGYTLXEDTCVLDVCQ 95

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118

 Score = 74.3 bits (183), Expect = 8e-17
 Identities = 30/121 (24%), Positives = 46/121 (38%), Gaps = 13/121 (10%)

Query: 58  DIDECKALDKPCGLRAICENTVPG-FNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECV 116
            +D C            C+      + C+C +G++  P     C+     + C +  +C 
Sbjct: 3   PVDPCF----RANCEYQCQPLDQTSYLCVCAEGFAPIPHEPHRCQMFCNQTACPA--DCD 56

Query: 117 NNAECVDGLCYCRPGFD-ARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGA 175
            N       C C  G+    G +C D+DEC+ G  C     C N PG+F C C      A
Sbjct: 57  PNT---QASCECPEGYILDDGFICTDIDECENGGFC--SGVCHNLPGTFECICGPDSALA 111

Query: 176 P 176
            
Sbjct: 112 G 112

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118

 Score = 53.5 bits (129), Expect = 3e-09
 Identities = 22/88 (25%), Positives = 29/88 (32%), Gaps = 4/88 (4%)

Query: 236 NLNRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLR 295
             +     +   N     A C D     SC C E Y  D    C+DIDEC   +      
Sbjct: 35  IPHEPHRCQMFCNQTACPADC-DPNTQASCECPEGYILDDGFICTDIDEC---ENGGFCS 90

Query: 296 AICENTVPGFNCLCPKGYSGKPDAKVAC 323
            +C N    F C+C    +        C
Sbjct: 91  GVCHNLPGTFECICGPDSALAGQIGTDC 118

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118

 Score = 53.1 bits (128), Expect = 3e-09
 Identities = 22/83 (26%), Positives = 28/83 (33%), Gaps = 4/83 (4%)

Query: 18  DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICEN 77
              +   N     A C D     SC C E Y  D    C+DIDEC   +       +C N
Sbjct: 40  HRCQMFCNQTACPADC-DPNTQASCECPEGYILDDGFICTDIDEC---ENGGFCSGVCHN 95

Query: 78  TVPGFNCLCPKGYSGKPDAKVAC 100
               F C+C    +        C
Sbjct: 96  LPGTFECICGPDSALAGQIGTDC 118

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Length = 118

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 8/74 (10%)

Query: 241 DINECQSNPCGVNATCID-TQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 299
            ++ C    C     C    Q SY CVC E +   P+    +   C+         A C+
Sbjct: 3   PVDPCFRANC--EYQCQPLDQTSYLCVCAEGFAPIPH----EPHRCQMFCNQTACPADCD 56

Query: 300 NTVPGFNCLCPKGY 313
                 +C CP+GY
Sbjct: 57  PN-TQASCECPEGY 69

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score = 71.6 bits (176), Expect = 6e-16
 Identities = 31/153 (20%), Positives = 44/153 (28%), Gaps = 48/153 (31%)

Query: 30  NATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKG 89
           +         Y     E+      Q     +EC   +  C    +C +   G+ CLCP G
Sbjct: 3   HHHHHHPMSDYDIPTTENLYF---QGAMGTNECLDNNGGCS--YVCNDLKIGYECLCPDG 57

Query: 90  YSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGSVCVDVDECQLGD 149
           +      +                                         C D+DECQ  D
Sbjct: 58  FQLVAQRR-----------------------------------------CEDIDECQDPD 76

Query: 150 PCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCK 182
            C     C N  G ++C C EG+   P    CK
Sbjct: 77  TC--SQLCVNLEGGYKCQCEEGFQLDPHTKACK 107

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score = 60.4 bits (147), Expect = 6e-12
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 17  VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 76
           +  NEC  N  G +  C D +  Y C+C + +     + C DIDEC      C    +C 
Sbjct: 27  MGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDEC-QDPDTCS--QLCV 83

Query: 77  NTVPGFNCLCPKGYSGKPDAK 97
           N   G+ C C +G+   P  K
Sbjct: 84  NLEGGYKCQCEEGFQLDPHTK 104

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score = 60.4 bits (147), Expect = 6e-12
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 299
           +  NEC  N  G +  C D +  Y C+C + +     + C DIDEC      C    +C 
Sbjct: 27  MGTNECLDNNGGCSYVCNDLKIGYECLCPDGFQLVAQRRCEDIDEC-QDPDTCS--QLCV 83

Query: 300 NTVPGFNCLCPKGYSGKPDAK 320
           N   G+ C C +G+   P  K
Sbjct: 84  NLEGGYKCQCEEGFQLDPHTK 104

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Length = 107

 Score = 48.9 bits (117), Expect = 8e-08
 Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 5/66 (7%)

Query: 253 NATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKG 312
           +         Y     E+      Q     +EC   +  C    +C +   G+ CLCP G
Sbjct: 3   HHHHHHPMSDYDIPTTENLYF---QGAMGTNECLDNNGGCS--YVCNDLKIGYECLCPDG 57

Query: 313 YSGKPD 318
           +     
Sbjct: 58  FQLVAQ 63

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 18 DINECQSNPCG-VNATCIDTQGSYSCVCKEHYTGDPYQ--ACSDIDECKALDKPCGLRAI 74
          DI+EC+ +P       C++T G + C C E Y         C DIDEC+     C    +
Sbjct: 2  DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCR-GGV 60

Query: 75 CENTVPGFNCLCPKGYSGKPDAK 97
          C NT   + C CP G+   P+  
Sbjct: 61 CHNTEGSYRCECPPGHQLSPNIS 83

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 4/83 (4%)

Query: 241 DINECQSNPCG-VNATCIDTQGSYSCVCKEHYTGDPYQ--ACSDIDECKALDKPCGLRAI 297
           DI+EC+ +P       C++T G + C C E Y         C DIDEC+     C    +
Sbjct: 2   DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCR-GGV 60

Query: 298 CENTVPGFNCLCPKGYSGKPDAK 320
           C NT   + C CP G+   P+  
Sbjct: 61  CHNTEGSYRCECPPGHQLSPNIS 83

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86

 Score = 65.0 bits (159), Expect = 9e-14
 Identities = 33/125 (26%), Positives = 42/125 (33%), Gaps = 40/125 (32%)

Query: 57  SDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECV 116
           +DIDEC+     CG R  C NT   F C C +GY                          
Sbjct: 1   TDIDECRISPDLCG-RGQCVNTPGDFECKCDEGYESGFM--------------------- 38

Query: 117 NNAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAP 176
                                 C+D+DECQ          C NT GS+RC+C  G+  +P
Sbjct: 39  ------------------MMKNCMDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSP 80

Query: 177 PRIKC 181
               C
Sbjct: 81  NISAC 85

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86

 Score = 51.9 bits (125), Expect = 5e-09
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 141 DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIK-CKDV 184
           D+DEC++      + QC NTPG F C C EGY      +K C D+
Sbjct: 2   DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFMMMKNCMDI 46

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86

 Score = 40.0 bits (94), Expect = 6e-05
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 17 VDINECQSNPCG-VNATCIDTQGSYSCVCKEHYTGDP 52
          +DI+ECQ +P       C +T+GSY C C   +   P
Sbjct: 44 MDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSP 80

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86

 Score = 40.0 bits (94), Expect = 6e-05
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 240 VDINECQSNPCG-VNATCIDTQGSYSCVCKEHYTGDP 275
           +DI+ECQ +P       C +T+GSY C C   +   P
Sbjct: 44  MDIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSP 80

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Length = 86

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 280 SDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACE 324
           +DIDEC+     CG R  C NT   F C C +GY         C 
Sbjct: 1   TDIDECRISPDLCG-RGQCVNTPGDFECKCDEGYESGFMMMKNCM 44

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 26/143 (18%), Positives = 42/143 (29%), Gaps = 24/143 (16%)

Query: 20  NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 79
            EC    C       +          +      +    D D+C     PC  +  C++ +
Sbjct: 10  RECMEETC-----SYEEAREVFEDSDKTNEF--WNKYKDGDQC--ETSPCQNQGKCKDGL 60

Query: 80  PGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGL----CYCRPGFDAR 135
             + C C +G+ GK      CE       CS +     +  C +      C C  G+   
Sbjct: 61  GEYTCTCLEGFEGK-----NCEL-FTRKLCSLD-NGDCDQFCHEEQNSVVCSCARGY--T 111

Query: 136 GSVC-VDVDECQLGDPCGPQAQC 157
            +             PCG Q   
Sbjct: 112 LADNGKACIPTG-PYPCGKQTLE 133

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 61.5 bits (150), Expect = 6e-12
 Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 13/106 (12%)

Query: 17  VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACS-DIDECKALDKPCGLRAIC 75
            D ++C+++PC     C D  G Y+C C E + G   + C     +  +LD        C
Sbjct: 40  KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG---KNCELFTRKLCSLD-NGDCDQFC 95

Query: 76  ENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAEC 121
                   C C +GY+   +                   C      
Sbjct: 96  HEEQNSVVCSCARGYTLADN------GKAC-IPTGPY-PCGKQTLE 133

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 61.2 bits (149), Expect = 7e-12
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 5/80 (6%)

Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACS-DIDECKALDKPCGLRAIC 298
            D ++C+++PC     C D  G Y+C C E + G   + C     +  +LD        C
Sbjct: 40  KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEG---KNCELFTRKLCSLD-NGDCDQFC 95

Query: 299 ENTVPGFNCLCPKGYSGKPD 318
                   C C +GY+   +
Sbjct: 96  HEEQNSVVCSCARGYTLADN 115

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 59.6 bits (145), Expect = 2e-11
 Identities = 24/116 (20%), Positives = 34/116 (29%), Gaps = 15/116 (12%)

Query: 65  LDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDG 124
           L++ C                  K             +     +C ++  C N  +C DG
Sbjct: 8   LERECMEETCSYEEAREVFEDSDKTNEFWN-----KYKD--GDQCETS-PCQNQGKCKDG 59

Query: 125 L----CYCRPGFDARGSVC-VDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGA 175
           L    C C  GF+  G  C +   +    D       C     S  C C  GY  A
Sbjct: 60  LGEYTCTCLEGFE--GKNCELFTRKLCSLDNGDCDQFCHEEQNSVVCSCARGYTLA 113

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Length = 134

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 9/74 (12%)

Query: 243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 302
            EC    C       +          +      +    D D+C     PC  +  C++ +
Sbjct: 10  RECMEETC-----SYEEAREVFEDSDKTNEF--WNKYKDGDQC--ETSPCQNQGKCKDGL 60

Query: 303 PGFNCLCPKGYSGK 316
             + C C +G+ GK
Sbjct: 61  GEYTCTCLEGFEGK 74

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 62.4 bits (152), Expect = 3e-12
 Identities = 34/150 (22%), Positives = 48/150 (32%), Gaps = 36/150 (24%)

Query: 21  ECQSNPCGVNATCID--TQGSYSCVCKEHYTGD----------PYQACSDIDECKALDKP 68
            C  NPC     C+     GS+SC C + +T              +  +    C     P
Sbjct: 2   ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPC--TPNP 59

Query: 69  C-------GLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAEC 121
           C          A   +T  G+ C CP+G++G       C+     +EC     C N   C
Sbjct: 60  CHNGGTCEISEAYRGDTFIGYVCKCPRGFNGI-----HCQH--NINECEVE-PCKNGGIC 111

Query: 122 VDGL----CYCRPGFDARGSVC-VDVDECQ 146
            D +    C C   F   G  C        
Sbjct: 112 TDLVANYSCECPGEF--MGRNCQYKGGGHH 139

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 62.0 bits (151), Expect = 4e-12
 Identities = 32/134 (23%), Positives = 50/134 (37%), Gaps = 25/134 (18%)

Query: 60  DECKALDKPCGLRAICENTVP--GFNCLCPKGYSGK-----PDAKVACEQVDVTSECSSN 112
           D C     PC    IC   +    F+C CP G++        +     E+      C+ N
Sbjct: 1   DIC--DPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPN 58

Query: 113 FECVNNAECVDGL-----------CYCRPGFDARGSVC-VDVDECQLGDPCGPQAQCTNT 160
             C N   C               C C  GF   G  C  +++EC+  +PC     CT+ 
Sbjct: 59  -PCHNGGTCEISEAYRGDTFIGYVCKCPRGF--NGIHCQHNINECE-VEPCKNGGICTDL 114

Query: 161 PGSFRCDCVEGYVG 174
             ++ C+C   ++G
Sbjct: 115 VANYSCECPGEFMG 128

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 54.0 bits (130), Expect = 3e-09
 Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 13/95 (13%)

Query: 230 IEDAKRNLNRVDINECQSNPCGVNATCI-------DTQGSYSCVCKEHYTGDPYQACS-D 281
           +E A           C  NPC    TC        DT   Y C C   + G     C  +
Sbjct: 40  VEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNG---IHCQHN 96

Query: 282 IDECKALDKPCGLRAICENTVPGFNCLCPKGYSGK 316
           I+EC    +PC    IC + V  ++C CP  + G+
Sbjct: 97  INEC--EVEPCKNGGICTDLVANYSCECPGEFMGR 129

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 13/85 (15%)

Query: 17  VDINECQSNPCGVNATCI-------DTQGSYSCVCKEHYTGDPYQACS-DIDECKALDKP 68
                C  NPC    TC        DT   Y C C   + G     C  +I+EC    +P
Sbjct: 50  TSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNG---IHCQHNINEC--EVEP 104

Query: 69  CGLRAICENTVPGFNCLCPKGYSGK 93
           C    IC + V  ++C CP  + G+
Sbjct: 105 CKNGGICTDLVANYSCECPGEFMGR 129

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 21/92 (22%)

Query: 244 ECQSNPCGVNATCID--TQGSYSCVCKEHYTGD----------PYQACSDIDECKALDKP 291
            C  NPC     C+     GS+SC C + +T              +  +    C     P
Sbjct: 2   ICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPC--TPNP 59

Query: 292 C-------GLRAICENTVPGFNCLCPKGYSGK 316
           C          A   +T  G+ C CP+G++G 
Sbjct: 60  CHNGGTCEISEAYRGDTFIGYVCKCPRGFNGI 91

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 17  VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACS-DIDEC 62
            +INEC+  PC     C D   +YSC C   + G   + C       
Sbjct: 95  HNINECEVEPCKNGGICTDLVANYSCECPGEFMG---RNCQYKGGGH 138

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Length = 143

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACS-DIDEC 285
            +INEC+  PC     C D   +YSC C   + G   + C       
Sbjct: 95  HNINECEVEPCKNGGICTDLVANYSCECPGEFMG---RNCQYKGGGH 138

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 60.1 bits (146), Expect = 1e-11
 Identities = 25/89 (28%), Positives = 31/89 (34%), Gaps = 10/89 (11%)

Query: 17 VDINECQSNP--------CGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKP 68
          VD ++C   P        C  + TCID  GS+SC C+  + G   Q       C      
Sbjct: 4  VDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSL--DN 61

Query: 69 CGLRAICENTVPGFNCLCPKGYSGKPDAK 97
           G    C   V    C C  GY    D  
Sbjct: 62 GGCTHYCLEEVGWRRCSCAPGYKLGDDLL 90

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 60.1 bits (146), Expect = 1e-11
 Identities = 25/89 (28%), Positives = 31/89 (34%), Gaps = 10/89 (11%)

Query: 240 VDINECQSNP--------CGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKP 291
           VD ++C   P        C  + TCID  GS+SC C+  + G   Q       C      
Sbjct: 4   VDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSL--DN 61

Query: 292 CGLRAICENTVPGFNCLCPKGYSGKPDAK 320
            G    C   V    C C  GY    D  
Sbjct: 62  GGCTHYCLEEVGWRRCSCAPGYKLGDDLL 90

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 55.1 bits (133), Expect = 6e-10
 Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 100 CEQVDVTSECSSNFECVNNAECVDGL----CYCRPGFDARG-SVCVDVDECQLGDPCGPQ 154
           C  + +   C+S   C  +  C+DG+    C CR G++ R     V    C L D  G  
Sbjct: 9   CLVLPLEHPCASL--CCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSL-DNGGCT 65

Query: 155 AQCTNTPGSFRCDCVEGYVGAPPRIKCKDV 184
             C    G  RC C  GY      ++C   
Sbjct: 66  HYCLEEVGWRRCSCAPGYKLGDDLLQCHPA 95

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Length = 114

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 12/62 (19%), Positives = 16/62 (25%), Gaps = 6/62 (9%)

Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQ-ACSDIDECKALDKPCGLRAIC 298
           V    C  +  G    C++  G   C C   Y        C    +      PCG     
Sbjct: 52  VSFLNCSLDNGGCTHYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVKF-----PCGRPWKR 106

Query: 299 EN 300
             
Sbjct: 107 ME 108

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} Length = 87

 Score = 58.4 bits (142), Expect = 2e-11
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 8/82 (9%)

Query: 18 DINECQSNPCG-VNATCIDTQGSYSCVCKEHYTGDPYQ-ACSDIDECKALDKPCGLRAIC 75
          D++EC   P     A C +  G + C C E Y  +    +C DIDEC   +  C    +C
Sbjct: 2  DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDEC--SENMCA--QLC 57

Query: 76 ENTVPGFNCLC--PKGYSGKPD 95
           N   G+ C C   KG+    D
Sbjct: 58 VNYPGGYTCYCDGKKGFKLAQD 79

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} Length = 87

 Score = 58.4 bits (142), Expect = 2e-11
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 8/82 (9%)

Query: 241 DINECQSNPCG-VNATCIDTQGSYSCVCKEHYTGDPYQ-ACSDIDECKALDKPCGLRAIC 298
           D++EC   P     A C +  G + C C E Y  +    +C DIDEC   +  C    +C
Sbjct: 2   DVDECSLKPSICGTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDEC--SENMCA--QLC 57

Query: 299 ENTVPGFNCLC--PKGYSGKPD 318
            N   G+ C C   KG+    D
Sbjct: 58  VNYPGGYTCYCDGKKGFKLAQD 79

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} Length = 87

 Score = 56.1 bits (136), Expect = 2e-10
 Identities = 31/129 (24%), Positives = 41/129 (31%), Gaps = 46/129 (35%)

Query: 58  DIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVN 117
           D+DEC      CG  A+C+N    F C CP+GY                           
Sbjct: 2   DVDECSLKPSICG-TAVCKNIPGDFECECPEGYRYNLK---------------------- 38

Query: 118 NAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCV--EGYVGA 175
                                C D+DEC     C     C N PG + C C   +G+  A
Sbjct: 39  ------------------SKSCEDIDECSEN-MC--AQLCVNYPGGYTCYCDGKKGFKLA 77

Query: 176 PPRIKCKDV 184
             +  C+ V
Sbjct: 78  QDQKSCEVV 86

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 63.3 bits (153), Expect = 2e-11
 Identities = 27/109 (24%), Positives = 39/109 (35%), Gaps = 3/109 (2%)

Query: 20  NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 79
           NEC  N  G +  C D +  Y C+C + +     + C DIDEC     P     +C N  
Sbjct: 1   NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDEC---QDPDTCSQLCVNLE 57

Query: 80  PGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYC 128
            G+ C C +G+   P  K       +     +N   V            
Sbjct: 58  GGYKCQCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTS 106

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Length = 400

 Score = 61.8 bits (149), Expect = 7e-11
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 302
           NEC  N  G +  C D +  Y C+C + +     + C DIDEC     P     +C N  
Sbjct: 1   NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDEC---QDPDTCSQLCVNLE 57

Query: 303 PGFNCLCPKGYSGKPDAK 320
            G+ C C +G+   P  K
Sbjct: 58  GGYKCQCEEGFQLDPHTK 75

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 59.3 bits (144), Expect = 4e-11
 Identities = 22/107 (20%), Positives = 31/107 (28%), Gaps = 12/107 (11%)

Query: 17  VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 76
           VD ++C+ NPC     C D   SY C C+  + G   +   D      +      +    
Sbjct: 46  VDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCE--LDATCN--IKNGRCKQFCKT 101

Query: 77  NTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVD 123
                  C C  GY   PD      Q            C   +    
Sbjct: 102 GADSKVLCSCTTGYRLAPD------QKSC-KPAVPF-PCGRVSVSHS 140

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 58.5 bits (142), Expect = 8e-11
 Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 4/79 (5%)

Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 299
           VD ++C+ NPC     C D   SY C C+  + G   +   D      +      +    
Sbjct: 46  VDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGKNCE--LDATCN--IKNGRCKQFCKT 101

Query: 300 NTVPGFNCLCPKGYSGKPD 318
                  C C  GY   PD
Sbjct: 102 GADSKVLCSCTTGYRLAPD 120

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 56.2 bits (136), Expect = 6e-10
 Identities = 27/143 (18%), Positives = 45/143 (31%), Gaps = 24/143 (16%)

Query: 33  CIDTQGSYSCVCKEHYTGDP-----YQACSDIDECKALDKPCGLRAICENTVPGFNCLCP 87
           CI+ + S+     E +         ++   D D+C     PC    +C++ +  + C C 
Sbjct: 18  CIEEKCSFEEAR-EVFENTEKTNEFWKQYVDGDQC--EPNPCLNGGLCKDDINSYECWCQ 74

Query: 88  KGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDG----LCYCRPGFDARGSVC-VDV 142
            G+ GK      CE     +    N                LC C  G+  R +      
Sbjct: 75  VGFEGK-----NCEL--DATCNIKN-GRCKQFCKTGADSKVLCSCTTGY--RLAPDQKSC 124

Query: 143 DECQLGDPCGPQAQCTNTPGSFR 165
                  PCG  +   +     R
Sbjct: 125 KPAV-PFPCGRVSVSHSPTTLTR 146

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 27/119 (22%), Positives = 39/119 (32%), Gaps = 21/119 (17%)

Query: 61  ECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAE 120
           EC  +++ C      E           K            + VD   +C  N  C+N   
Sbjct: 17  EC--IEEKCSFEEARE-----VFENTEKTNEF------WKQYVDG-DQCEPN-PCLNGGL 61

Query: 121 CVDGL----CYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGA 175
           C D +    C+C+ GF+  G  C     C + +    Q   T       C C  GY  A
Sbjct: 62  CKDDINSYECWCQVGFE--GKNCELDATCNIKNGRCKQFCKTGADSKVLCSCTTGYRLA 118

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Length = 146

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 8/66 (12%)

Query: 256 CIDTQGSYSCVCKEHYTGDP-----YQACSDIDECKALDKPCGLRAICENTVPGFNCLCP 310
           CI+ + S+     E +         ++   D D+C     PC    +C++ +  + C C 
Sbjct: 18  CIEEKCSFEEAR-EVFENTEKTNEFWKQYVDGDQC--EPNPCLNGGLCKDDINSYECWCQ 74

Query: 311 KGYSGK 316
            G+ GK
Sbjct: 75  VGFEGK 80

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 59.7 bits (145), Expect = 5e-11
 Identities = 32/158 (20%), Positives = 51/158 (32%), Gaps = 28/158 (17%)

Query: 20  NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 79
             C+           D   + +  C E + G        I               C+   
Sbjct: 32  KFCRPRDDFFGHYACD--QNGNKTCMEGWMGPECN--RAICRQG----CSPKHGSCKL-- 81

Query: 80  PGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDG-LCYCRPGFDARGSV 138
              +C C  G+ G       C+      +C  +     +  C +   C C   +   G +
Sbjct: 82  -PGDCRCQYGWQGL-----YCD------KCIPH-PGCVHGICNEPWQCLCETNWG--GQL 126

Query: 139 C-VDVDECQLGDPCGPQAQCTNT-PGSFRCDCVEGYVG 174
           C  D++ C    PC     C+NT P  ++C C EGY G
Sbjct: 127 CDKDLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGYSG 164

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 9/76 (11%)

Query: 20  NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACS-DIDECKALDKPCGLRAICENT 78
           ++C  +P  V+  C +    + C+C+ ++ G   Q C  D++ C    +PC     C NT
Sbjct: 97  DKCIPHPGCVHGICNE---PWQCLCETNWGG---QLCDKDLNYC-GTHQPCLNGGTCSNT 149

Query: 79  VPG-FNCLCPKGYSGK 93
            P  + C CP+GYSG 
Sbjct: 150 GPDKYQCSCPEGYSGP 165

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 9/76 (11%)

Query: 243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACS-DIDECKALDKPCGLRAICENT 301
           ++C  +P  V+  C +    + C+C+ ++ G   Q C  D++ C    +PC     C NT
Sbjct: 97  DKCIPHPGCVHGICNE---PWQCLCETNWGG---QLCDKDLNYC-GTHQPCLNGGTCSNT 149

Query: 302 VPG-FNCLCPKGYSGK 316
            P  + C CP+GYSG 
Sbjct: 150 GPDKYQCSCPEGYSGP 165

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Length = 169

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 22/120 (18%), Positives = 42/120 (35%), Gaps = 26/120 (21%)

Query: 18  DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICEN 77
           +   C+      + +C        C C+  + G         D+C  +  P  +  IC  
Sbjct: 64  NRAICRQGCSPKHGSCKL---PGDCRCQYGWQGL------YCDKC--IPHPGCVHGICNE 112

Query: 78  TVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVD-----GLCYCRPGF 132
               + CLC   + G+      C++    + C ++  C+N   C +       C C  G+
Sbjct: 113 ---PWQCLCETNWGGQ-----LCDK--DLNYCGTHQPCLNGGTCSNTGPDKYQCSCPEGY 162

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 10/84 (11%)

Query: 17  VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQAC-SDIDECKALDKPC---GLR 72
            D ++C S+PC    +C D   SY C C   + G   + C +  D+   L       G  
Sbjct: 45  SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEG---RNCETHKDDQ--LICVNENGGCE 99

Query: 73  AICENTVP-GFNCLCPKGYSGKPD 95
             C +      +C C +GYS   D
Sbjct: 100 QYCSDHTGTKRSCRCHEGYSLLAD 123

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 10/84 (11%)

Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQAC-SDIDECKALDKPC---GLR 295
            D ++C S+PC    +C D   SY C C   + G   + C +  D+   L       G  
Sbjct: 45  SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEG---RNCETHKDDQ--LICVNENGGCE 99

Query: 296 AICENTVP-GFNCLCPKGYSGKPD 318
             C +      +C C +GYS   D
Sbjct: 100 QYCSDHTGTKRSCRCHEGYSLLAD 123

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 13/85 (15%)

Query: 108 ECSSNFECVNNAECVDGL----CYCRPGFDARGSVC-VDVDECQLGDPC---GPQAQCTN 159
           +C+S+  C N   C D L    C+C P F+  G  C    D+          G +  C++
Sbjct: 49  QCASS-PCQNGGSCKDQLQSYICFCLPAFE--GRNCETHKDDQL-ICVNENGGCEQYCSD 104

Query: 160 TPGS-FRCDCVEGYVGAPPRIKCKD 183
             G+   C C EGY      + C  
Sbjct: 105 HTGTKRSCRCHEGYSLLADGVSCTP 129

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Length = 142

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 4/64 (6%)

Query: 114 ECVN---NAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVE 170
           EC     + E    +               D D+C    PC     C +   S+ C C+ 
Sbjct: 16  ECKEEQCSFEEAREIFKDAERTKLFWISYSDGDQC-ASSPCQNGGSCKDQLQSYICFCLP 74

Query: 171 GYVG 174
            + G
Sbjct: 75  AFEG 78

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 60.2 bits (145), Expect = 2e-10
 Identities = 30/164 (18%), Positives = 46/164 (28%), Gaps = 9/164 (5%)

Query: 18  DINECQSNPCGVNATCIDTQGSYSCVCKEHYT--GDPYQACSDIDECKALDKPCGLRAIC 75
               C  N  G    C   +G+  C C   Y    D    C D++EC    +       C
Sbjct: 2   GEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRT-CQDVNEC---AEEGYCSQGC 57

Query: 76  ENTVPGFNCLCPKGYSGKPDAKVAC---EQVDVTSECSSNFECVNNAECVDGLCYCRPGF 132
            N+   F C C  GY  +PD +       +  +      +   V        L       
Sbjct: 58  TNSEGAFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLLLNNLEN 117

Query: 133 DARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAP 176
                     +     D    +    N  GS   + V   + +P
Sbjct: 118 AIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESP 161

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 57.1 bits (137), Expect = 2e-09
 Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 6/80 (7%)

Query: 241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYT--GDPYQACSDIDECKALDKPCGLRAIC 298
               C  N  G    C   +G+  C C   Y    D    C D++EC    +       C
Sbjct: 2   GEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRT-CQDVNEC---AEEGYCSQGC 57

Query: 299 ENTVPGFNCLCPKGYSGKPD 318
            N+   F C C  GY  +PD
Sbjct: 58  TNSEGAFQCWCEAGYELRPD 77

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Length = 386

 Score = 50.2 bits (119), Expect = 4e-07
 Identities = 24/154 (15%), Positives = 34/154 (22%), Gaps = 18/154 (11%)

Query: 57  SDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECV 116
           +  + C       G    C+       C C  GY    D +           C    EC 
Sbjct: 1   TGEENCN--VNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRT----------CQDVNECA 48

Query: 117 NNAECVDGLCYCRPGFDARGSVCVDVDECQL-GDPCGPQAQCTNTPGSFRCDCVEGYVGA 175
               C    C    G       C      +L  D    +A        F        V  
Sbjct: 49  EEGYC-SQGCTNSEG----AFQCWCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLP 103

Query: 176 PPRIKCKDVRWEFNVTLLFYETDYLHSVASDISD 209
                   +    N   L +         SD++ 
Sbjct: 104 HRSEYTLLLNNLENAIALDFHHRRELVFWSDVTL 137

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 57.6 bits (139), Expect = 1e-09
 Identities = 34/156 (21%), Positives = 48/156 (30%), Gaps = 33/156 (21%)

Query: 20  NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 79
               +  C     C+       C+C   + G     C D   C      C     C    
Sbjct: 180 KALCTPRCMNGGLCVT---PGFCICPPGFYGV---NC-DKANC---STTCFNGGTCFYP- 228

Query: 80  PGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGSVC 139
               C+CP G  G+      CE       C +  +C+         C C  G+  +G +C
Sbjct: 229 --GKCICPPGLEGE-----QCEISKCPQPCRNGGKCIGK-----SKCKCSKGY--QGDLC 274

Query: 140 -VDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
              V E      CG    C       +C C EG+ G
Sbjct: 275 SKPVCEP----GCGAHGTCHE---PNKCQCQEGWHG 303

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 54.9 bits (132), Expect = 8e-09
 Identities = 35/157 (22%), Positives = 54/157 (34%), Gaps = 32/157 (20%)

Query: 18  DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICEN 77
              EC    C     C +      C C + + G     C +   C      C    +C  
Sbjct: 147 QQAEC-PGGCRNGGFCNE---RRICECPDGFHGP---HC-EKALC---TPRCMNGGLCVT 195

Query: 78  TVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGS 137
                 C+CP G+ G       C++ + ++ C +   C        G C C PG    G 
Sbjct: 196 P---GFCICPPGFYGV-----NCDKANCSTTCFNGGTCFYP-----GKCICPPGL--EGE 240

Query: 138 VCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
            C ++ +C    PC    +C       +C C +GY G
Sbjct: 241 QC-EISKCP--QPCRNGGKCIG---KSKCKCSKGYQG 271

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 47.2 bits (112), Expect = 3e-06
 Identities = 29/134 (21%), Positives = 40/134 (29%), Gaps = 28/134 (20%)

Query: 20  NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTV 79
               S  C    TC        C+C     G   + C  I +C    +PC     C   +
Sbjct: 212 KANCSTTCFNGGTCFYP---GKCICPPGLEG---EQCE-ISKC---PQPCRNGGKC---I 258

Query: 80  PGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVD-GLCYCRPGFDARGSV 138
               C C KGY G       C        C     C  +  C +   C C+ G+   G  
Sbjct: 259 GKSKCKCSKGYQGD-----LCS----KPVCEPG--CGAHGTCHEPNKCQCQEGW--HGRH 305

Query: 139 C-VDVDECQLGDPC 151
           C    +   +G   
Sbjct: 306 CNKRYEASLIGTKH 319

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Length = 324

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 24/154 (15%), Positives = 35/154 (22%), Gaps = 34/154 (22%)

Query: 22  CQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPG 81
             + P         +       C     G        I              +  +    
Sbjct: 87  TVNVPLLGTVPHKASVVQVGFPCLGKQDGVAAFEVDVI--------------VMNSEGNT 132

Query: 82  FNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVD-GLCYCRPGFDARGSVCV 140
                      K      C+Q    +EC     C N   C +  +C C  GF   G  C 
Sbjct: 133 ILKTPQNAIFFK-----TCQQ----AECPGG--CRNGGFCNERRICECPDGF--HGPHC- 178

Query: 141 DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
             ++      C     C        C C  G+ G
Sbjct: 179 --EKALCTPRCMNGGLCVT---PGFCICPPGFYG 207

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 56.3 bits (136), Expect = 3e-09
 Identities = 22/110 (20%), Positives = 33/110 (30%), Gaps = 7/110 (6%)

Query: 17  VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 76
              + C S PC  N +C D+   Y+C C   Y G   +     +EC            C 
Sbjct: 3   KGGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCE--LAKNECHPERTDGCQH-FCL 59

Query: 77  NTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLC 126
                + C C +GY    D     +Q     +C+                
Sbjct: 60  PGQESYTCSCAQGYRLGED----HKQCVPHDQCACGVLTSEKRAPDLQDL 105

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 21/84 (25%), Positives = 29/84 (34%), Gaps = 3/84 (3%)

Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE 299
              + C S PC  N +C D+   Y+C C   Y G   +     +EC            C 
Sbjct: 3   KGGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCE--LAKNECHPERTDGCQH-FCL 59

Query: 300 NTVPGFNCLCPKGYSGKPDAKVAC 323
                + C C +GY    D K   
Sbjct: 60  PGQESYTCSCAQGYRLGEDHKQCV 83

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 8/78 (10%)

Query: 109 CSSNFECVNNAECVDGL----CYCRPGFDARGSVC-VDVDECQLGDPCGPQAQCTNTPGS 163
           C S   C++N  C D +    C C PG++  GS C +  +EC      G Q  C     S
Sbjct: 8   CISQ-PCLHNGSCQDSIWGYTCTCSPGYE--GSNCELAKNECHPERTDGCQHFCLPGQES 64

Query: 164 FRCDCVEGYVGAPPRIKC 181
           + C C +GY       +C
Sbjct: 65  YTCSCAQGYRLGEDHKQC 82

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A Length = 39

 Score = 45.9 bits (110), Expect = 2e-07
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGD 51
          VD ++C+SNPC    +C D   SY C C   + G 
Sbjct: 1  VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGK 35

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A Length = 39

 Score = 45.9 bits (110), Expect = 2e-07
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGD 274
           VD ++C+SNPC    +C D   SY C C   + G 
Sbjct: 1   VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGK 35

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423

 Score = 50.5 bits (120), Expect = 3e-07
 Identities = 31/162 (19%), Positives = 48/162 (29%), Gaps = 13/162 (8%)

Query: 21  ECQSNPCGVNATCIDTQGSYSCVCKEHYTGDP-YQACSDIDECKALDKPCGLRAICENTV 79
                 C  N  C +   +  C+C   + G    +AC      +   + C  +  C++ V
Sbjct: 199 NHLCTACMNNGVCHED--TGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYV 256

Query: 80  P----GFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVD-GLCYCRPGFDA 134
                 + C C  G+ G      AC       +C     C N   C     C C PG+  
Sbjct: 257 FCLPDPYGCSCATGWKG-LQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQGCLCSPGW-- 313

Query: 135 RGSVC-VDVDECQLGDPCGPQAQCTNTPGSFRCDC-VEGYVG 174
           +G  C  +                    G F   C   G+  
Sbjct: 314 QGLQCEREGIPRMTPKIVDLPDHIEVNSGKFNPICKASGWPL 355

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423

 Score = 43.9 bits (103), Expect = 5e-05
 Identities = 31/171 (18%), Positives = 46/171 (26%), Gaps = 34/171 (19%)

Query: 20  NECQSNPCGVNATCIDT--QGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICEN 77
           +    +   +      +         C+    G          EC  L   C    +C  
Sbjct: 163 DAGVYSARYIGGNLFTSAFTRLIVRRCEAQKWG---------PECNHLCTACMNNGVCHE 213

Query: 78  TVPGFNCLCPKGYSGKPDAKVACEQV--------DVTSECSSNFECVNNAEC--VDGLCY 127
                 C+CP G+ G+      CE+              CS    C +   C      C 
Sbjct: 214 DT--GECICPPGFMGR-----TCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYGCS 266

Query: 128 CRPGFDARGSVC-VDVDECQLGDPCGPQAQCTNT---PGSFRCDCVEGYVG 174
           C  G+  +G  C         G  C  +  C N         C C  G+ G
Sbjct: 267 CATGW--KGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQGCLCSPGWQG 315

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Length = 423

 Score = 40.5 bits (94), Expect = 5e-04
 Identities = 26/166 (15%), Positives = 40/166 (24%), Gaps = 17/166 (10%)

Query: 20  NECQSNPCGVNATCID----TQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAIC 75
                  C     C          Y C C   + G     C++          C LR  C
Sbjct: 239 GRTCKERCSGQEGCKSYVFCLPDPYGCSCATGWKG---LQCNEACHPGFYGPDCKLRCSC 295

Query: 76  ENT---VPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGF 132
            N         CLC  G+ G       CE+  +        +  ++ E   G        
Sbjct: 296 NNGEMCDRFQGCLCSPGWQGL-----QCEREGIPRMTPKIVDLPDHIEVNSGKFNPICKA 350

Query: 133 DA-RGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPP 177
                    ++   +  D      +  N    F       +   PP
Sbjct: 351 SGWPLPTNEEMTLVKP-DGTVLHPKDFNHTDHFSVAIFTIHRILPP 395

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 426

 Score = 49.8 bits (118), Expect = 6e-07
 Identities = 29/157 (18%), Positives = 45/157 (28%), Gaps = 28/157 (17%)

Query: 15  AIVDINECQSNPCGVNA-TCIDTQGSYSCVCKEHYTGDPYQACSDIDECKAL--DKPCGL 71
           AI DI       C ++A  C+      +C C+ + TG       D  +CK     +P   
Sbjct: 287 AISDIKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGP------DCGKCKKNYQGRPWS- 339

Query: 72  RAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPG 131
                    G    C    S            +    C +   C NN       C C   
Sbjct: 340 PGSYLPIPKGAANACIPSISSIG----TNVCDNELLHCQNGGTCHNN-----VRCLCPAA 390

Query: 132 FDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDC 168
           +   G +C   ++ +    C     C +  G      
Sbjct: 391 YT--GILC---EKLR----CEEAGSCGSDSGQGAPPH 418

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A Length = 285

 Score = 45.9 bits (108), Expect = 6e-06
 Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 5/86 (5%)

Query: 17 VDINECQSN--PCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAI 74
          +    C +N   C V+A C D    + C C  +YTG+  Q C      + ++     R  
Sbjct: 3  LAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQ-CVAEGSPQRVNGKVKGRIF 61

Query: 75 CENTVPG--FNCLCPKGYSGKPDAKV 98
            ++     F       Y      + 
Sbjct: 62 VGSSQVPVVFENTDLHSYVVMNHGRS 87

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A Length = 285

 Score = 45.9 bits (108), Expect = 6e-06
 Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 5/86 (5%)

Query: 240 VDINECQSN--PCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAI 297
           +    C +N   C V+A C D    + C C  +YTG+  Q C      + ++     R  
Sbjct: 3   LAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGRQ-CVAEGSPQRVNGKVKGRIF 61

Query: 298 CENTVPG--FNCLCPKGYSGKPDAKV 321
             ++     F       Y      + 
Sbjct: 62  VGSSQVPVVFENTDLHSYVVMNHGRS 87

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A Length = 285

 Score = 41.7 bits (97), Expect = 2e-04
 Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 1/36 (2%)

Query: 140 VDVDECQLG-DPCGPQAQCTNTPGSFRCDCVEGYVG 174
           +    C      C   A+C +    F C CV  Y G
Sbjct: 3   LAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTG 38

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Length = 690

 Score = 46.6 bits (110), Expect = 8e-06
 Identities = 31/167 (18%), Positives = 46/167 (27%), Gaps = 20/167 (11%)

Query: 21  ECQSNPCGVNATCIDTQGSYS---CVCKEHYTGD--------PYQACSDIDECKALDKPC 69
            CQ+     +  C +  G++    C C   + G            +  D    +     C
Sbjct: 436 ACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVC 495

Query: 70  GLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCR 129
             R  C        C+C     GK   K  CE  D +        C  + +C  G C C 
Sbjct: 496 SQRGECLCG----QCVCHSSDFGKITGK-YCECDDFSCVRYKGEMCSGHGQCSCGDCLCD 550

Query: 130 PGFDARGSVC-VDVDECQLGDPCGPQAQCTNTPGSFRCDCVE-GYVG 174
             +   G  C             G             C C++ G  G
Sbjct: 551 SDW--TGYYCNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYG 595

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4 Length = 105

 Score = 40.5 bits (94), Expect = 7e-05
 Identities = 16/83 (19%), Positives = 23/83 (27%), Gaps = 2/83 (2%)

Query: 20  NECQSNPCGVNATCI-DTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENT 78
           ++C       NA C     G+    C   +     +       C+  +  C   A C   
Sbjct: 11  HKCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPASITCEENNGGCAPEAECTMD 70

Query: 79  VPG-FNCLCPKGYSGKPDAKVAC 100
                 C C K  S      V C
Sbjct: 71  DKKEVECKCTKEGSEPLFEGVFC 93

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4 Length = 105

 Score = 40.5 bits (94), Expect = 7e-05
 Identities = 16/83 (19%), Positives = 23/83 (27%), Gaps = 2/83 (2%)

Query: 243 NECQSNPCGVNATCI-DTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENT 301
           ++C       NA C     G+    C   +     +       C+  +  C   A C   
Sbjct: 11  HKCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGGKCVPASITCEENNGGCAPEAECTMD 70

Query: 302 VPG-FNCLCPKGYSGKPDAKVAC 323
                 C C K  S      V C
Sbjct: 71  DKKEVECKCTKEGSEPLFEGVFC 93

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687

 Score = 43.5 bits (102), Expect = 7e-05
 Identities = 30/160 (18%), Positives = 44/160 (27%), Gaps = 21/160 (13%)

Query: 19  INECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENT 78
             +  S  C     C+  Q    C+C                EC  ++       +C   
Sbjct: 476 RKDNNSIICSGLGDCVCGQ----CLCHTSDVPGKLI-YGQYCECDTINCERYNGQVCGGP 530

Query: 79  VPGF----NCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDA 134
             G      C C  G+ G       CE+           EC     C   +C C  G+  
Sbjct: 531 GRGLCFCGKCRCHPGFEGS---ACQCERTTEGCLNPRRVECSGRGRCRCNVCECHSGY-- 585

Query: 135 RGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
           +  +C +   C    PCG    C            +G  G
Sbjct: 586 QLPLCQECPGCP--SPCGKYISCAEC-----LKFEKGPFG 618

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 29/163 (17%), Positives = 38/163 (23%), Gaps = 14/163 (8%)

Query: 18  DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICEN 77
           D + C          C    G     C+    G   Q              C     C  
Sbjct: 433 DRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVC 492

Query: 78  TVPGFNCLCPKGYSGKPDAK-VACEQVDVTSECSSNFECVNNA--ECVDGLCYCRPGFDA 134
                 CLC              CE   +  E  +   C       C  G C C PGF+ 
Sbjct: 493 G----QCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCHPGFEG 548

Query: 135 RG---SVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
                    +         C  + +C        C+C  GY  
Sbjct: 549 SACQCERTTEGCLNPRRVECSGRGRCR----CNVCECHSGYQL 587

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1 Length = 53

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 7/41 (17%)

Query: 140 VDVDECQLGDPCGPQAQ-------CTNTPGSFRCDCVEGYV 173
           VD+DEC      G +         C N  G + C C  GY 
Sbjct: 2   VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYE 42

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A Length = 91

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 8/74 (10%)

Query: 22 CQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVP- 80
           Q +   +    + +     C C              +  C   +  C     C+  +  
Sbjct: 15 YQQHQSWLR-PVLRSNRVEYCWCNSGRAQC---HSVPVKSCS--EPRCFNGGTCQQALYF 68

Query: 81 -GFNCLCPKGYSGK 93
            F C CP+G++GK
Sbjct: 69 SDFVCQCPEGFAGK 82

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A Length = 91

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 8/74 (10%)

Query: 245 CQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVP- 303
            Q +   +    + +     C C              +  C   +  C     C+  +  
Sbjct: 15  YQQHQSWLR-PVLRSNRVEYCWCNSGRAQC---HSVPVKSCS--EPRCFNGGTCQQALYF 68

Query: 304 -GFNCLCPKGYSGK 316
             F C CP+G++GK
Sbjct: 69  SDFVCQCPEGFAGK 82

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score = 40.2 bits (93), Expect = 6e-04
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 142 VDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDV 184
           V+EC     C     CTN+ G+F+C C  GY   P R  CK +
Sbjct: 1   VNECAEEGYC--SQGCTNSEGAFQCWCEAGYELRPDRRSCKAL 41

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	332
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	99.84
1z1y_A	186	Ookinete surface protein PVS25; four EGF-like doma	99.83
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.82
2vj3_A	135	Neurogenic locus notch homolog protein 1; transcri	99.8
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	99.78
2bou_A	143	EGF-like module containing mucin-like hormone rece	99.77
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	99.75
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	99.72
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	99.68
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	99.67
4d90_A	143	EGF-like repeat and discoidin I-like domain-conta	99.66
1yo8_A	634	Thrombospondin-2; EGF, Ca(2+)-binding domains, lec	99.64
2bou_A	143	EGF-like module containing mucin-like hormone rece	99.64
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	99.64
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	99.64
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	99.64
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	99.63
2ygq_A	324	WIF-1, WNT inhibitory factor 1; signaling protein,	99.6
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	99.59
4fbr_A	267	Lectin, myxobacterial hemagglutinin; beta-barrel,	99.59
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	99.57
2vj2_A	169	Jagged-1; signalling, polymorphism, glycoprotein,	99.55
2w86_A	147	Fibrillin-1, fibrillin1; phosphoprotein, EGF-like	99.53
1dx5_I	118	Thrombomodulin; serine proteinase, EGF-like domain	99.52
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	99.5
1aut_L	114	Activated protein C; serine proteinase, plasma cal	99.48
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	99.48
3fcs_B	690	Integrin beta-3; beta propeller, rossmann fold, EG	99.44
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	99.44
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	99.39
1lmj_A	86	Fibrillin 1; EGF, calcium, microfibril, neonatal,	99.39
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	99.38
2vh0_B	134	Activated factor XA light chain; serine protease,	99.37
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	99.36
1emn_A	82	Fibrillin; extracellular matrix, calcium-binding,	99.32
1aut_L	114	Activated protein C; serine proteinase, plasma cal	99.31
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	99.24
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	99.23
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	99.22
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	99.2
2w2n_E	107	LDL receptor, low-density lipoprotein receptor; hy	99.12
1tpg_A	91	T-plasminogen activator F1-G; plasminogen activati	99.12
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	99.11
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.1
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	99.09
2gy5_A	423	Angiopoietin-1 receptor; ligand-binding domain, tr	99.09
2vh0_B	134	Activated factor XA light chain; serine protease,	99.08
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	99.03
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	99.01
3k6s_B	687	Integrin beta-2; cell receptor, adhesion molecule,	98.95
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.95
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.94
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.94
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	98.88
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	98.78
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.75
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.63
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	98.61
1edm_B	39	Factor IX; epidermal growth factor, EGF, calcium-	98.59
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	98.56
3u7u_G	55	Neuregulin 1; signaling protein, transferase-trans	98.4
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	98.37
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	98.25
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	98.24
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	98.24
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.24
2k2s_B	61	Micronemal protein 6; microneme protein complex, c	98.21
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	98.16
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	98.16
1egf_A	53	Epidermal growth factor; NMR {Mus musculus} SCOP:	98.15
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	98.14
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	98.14
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	98.06
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	98.05
1klo_A	162	Laminin; glycoprotein; 2.10A {Mus musculus} SCOP:	98.03
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	98.03
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	98.01
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	97.96
4aqs_A	525	Laminin subunit beta-1; cell adhesion; HET: NAG BM	97.95
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	97.93
2p28_B	217	Integrin beta-2; hybrid domain, PSI domain, I-EGF	97.93
1k36_A	46	Epiregulin; EGF-like fold, hormone/growth factor c	97.92
1a3p_A	45	Epidermal growth factor; disulfide connectivities,	97.87
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	97.84
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	97.81
2kl7_A	71	Fibulin-4; secreted, calcium, disease mutation, di	97.79
1ob1_C	99	Major merozoite surface protein; immune system, im	97.77
1hae_A	63	Heregulin-alpha; growth factor; NMR {Homo sapiens}	97.73
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	97.72
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	97.6
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	97.59
3ca7_A	52	Protein spitz; argos, EGF, developmental protein,	97.58
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.55
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	97.45
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	97.42
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	97.4
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	97.37
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	97.29
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	97.27
1gl4_A	285	Nidogen-1, entactin; immunoglobulin-like domain, e	97.15
1nql_B	53	Epidermal growth factor; cell surface receptor, ty	97.11
1ob1_C	99	Major merozoite surface protein; immune system, im	97.08
1n1i_A	105	Merozoite surface protein-1; MSP1, malaria, surfac	97.04
2wph_E	59	Coagulation factor IXA light chain; serine proteas	97.02
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	96.79
2wph_E	59	Coagulation factor IXA light chain; serine proteas	96.79
3zyj_B	426	Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA	96.76
1szb_A	170	Mannose binding lectin-associated serine protease-	96.73
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	96.61
1g1s_A	162	P-selectin; selectin, lectin, EGF, sulphated, SLEX	96.59
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	96.38
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	96.17
1q4g_A	553	Prostaglandin G/H synthase 1; cyclooxygenase, non-	95.95
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	95.89
3ltf_D	58	Protein spitz; receptor-ligand complex ectodomain	95.88
1szb_A	170	Mannose binding lectin-associated serine protease-	95.7
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	95.47
3nt1_A	587	Prostaglandin-endoperoxide synthase 2; prostagland	95.42
2fd6_A	122	Urokinase-type plasminogen activator; UPAR, ATF, A	95.17
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	94.97
1nzi_A	159	Complement C1S component; calcium, innate immunity	94.85
3cfw_A	164	L-selectin; EGF, cell adhesion, EGF-like domain, g	94.66
1b9w_A	95	Protein (merozoite surface protein 1); MSP-1, cand	94.42
2i9a_A	145	Urokinase-type plasminogen activator; growth facto	94.14
1g1t_A	157	E-selectin; EGF, adhesion molecule, SLEX, immune s	93.66
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	93.22
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	93.17
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	92.47
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	92.36
2rnl_A	50	Amphiregulin; AR, colorectum cell-derived growth f	92.16
1nzi_A	159	Complement C1S component; calcium, innate immunity	91.98
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	91.46
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	91.1
3e50_C	50	Protransforming growth factor alpha; IDE, TGF-alph	90.8
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	90.8
1iox_A	50	Betacellulin; EGF-like fold, hormone/growth factor	90.66
2rnl_A	50	Amphiregulin; AR, colorectum cell-derived growth f	90.63
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	90.62
1xdt_R	79	Hbegf, heparin-binding epidermal growth factor; co	90.54
2ygo_A	188	WIF-1, WNT inhibitory factor 1; signaling protein,	88.92
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	88.38
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	87.75
2i9a_A	145	Urokinase-type plasminogen activator; growth facto	86.13
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	85.58
2p26_A	280	Integrin beta-2; hybrid domain, PSI domain, I-EGF	85.01
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	84.8
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	84.45
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	83.8
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	82.43
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	81.72

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=99.84  E-value=4.8e-22  Score=160.13  Aligned_cols=154  Identities=27%  Similarity=0.638  Sum_probs=120.5

Q ss_pred             CCCCCCCCCCeeeeCCCCeEeeCCCCCccCCCCCCCCcccccCC--CCCCCCCCceeeCC-----CCeeeeCCCCCCCCC
Q psy2857          22 CQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKAL--DKPCGLRAICENTV-----PGFNCLCPKGYSGKP   94 (332)
Q Consensus        22 C~~~~C~~~g~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~c~~~--~~~C~~~~~C~~~~-----~~~~C~C~~g~~~~~   94 (332)
                      ....||. +++|+++.++|.|.|++||+|.....|+++++|...  ..+|.+++.|+++.     ++|.|.|.+||.|..
T Consensus         8 ~~~~pC~-ng~C~~~~g~~~C~C~~G~~g~~~~~C~~id~C~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~G~~g~~   86 (186)
T 1z1y_A            8 TVDTICX-NGQLVQMSNHFXCMCNEGLVHLSENTCEEXNECXXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXE   86 (186)
T ss_dssp             CTTCCCB-TEEEEECSSCEEEEECTTEEEEETTEEEECCCCSGGGTTSEEETTEEEEECSSTTSSCSEEEEECTTEEEET
T ss_pred             CCCCCCC-CCEeECCCCCeEeECCCCCccCCCCccCCCCcccCCCCCCCCCCCCEeecCCCCcCCCCEECCCCCCCccCC
Confidence            3556897 679999999999999999999755678899999743  57899899999998     899999999998752


Q ss_pred             CCccceeeccCCCCCCCCccccCCCcccCceecCCCCccCCCCeeecCCCCCCCCCCCCCCcee----cCCCceEeeCCC
Q psy2857          95 DAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCT----NTPGSFRCDCVE  170 (332)
Q Consensus        95 ~~~~~c~~~~~~~~c~~~~~C~~~~~c~~~~c~C~~g~~~~g~~c~~~~~C~~~~~C~~~~~C~----~~~~~~~C~C~~  170 (332)
                                                                ..|. +++|. ..+|.++++|+    ++.++|.|.|++
T Consensus        87 ------------------------------------------~~C~-~d~C~-~~~C~~~g~C~~~~~~~~g~~~C~C~~  122 (186)
T 1z1y_A           87 ------------------------------------------DTCV-LDVCQ-YXNCGESGECIVEYLSEIQSAGCSCAI  122 (186)
T ss_dssp             ------------------------------------------TEEE-EGGGT-TCCCCTTEEEEEEEETTEEEEEEEECT
T ss_pred             ------------------------------------------CCCC-CCcCc-CCCCCCCCEEeeCCcCCCCCceEECCC
Confidence                                                      1222 34665 45688889998    888899999999


Q ss_pred             CCccCC-CCccccccCcccceeeccccCcccccccCCcccccceecccccceecccccEEecccCccccccccCccCCCC
Q psy2857         171 GYVGAP-PRIKCKDVRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQSNP  249 (332)
Q Consensus       171 G~~g~~-~~~~c~~~~c~~~~~c~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~C~~~~  249 (332)
                      ||.|.. ....|.+                                                        +++++|. .+
T Consensus       123 Gy~g~~~~~~~C~~--------------------------------------------------------~~~~~C~-~~  145 (186)
T 1z1y_A          123 GXVPNPEDEXXCTX--------------------------------------------------------TGETACQ-LX  145 (186)
T ss_dssp             EEEEETTTTTEEEE--------------------------------------------------------EECCCCC-CC
T ss_pred             CCcccCCCCCcceE--------------------------------------------------------cCCCccc-cc
Confidence            998742 1111110                                                        1236777 48


Q ss_pred             C-CCCCeeeecCCceeeecCCCcccCCCC
Q psy2857         250 C-GVNATCIDTQGSYSCVCKEHYTGDPYQ  277 (332)
Q Consensus       250 C-~~~~~C~~~~~~~~C~C~~G~~g~~~~  277 (332)
                      | .++++|++..++|+|.|++||+|+.+.
T Consensus       146 C~~~~~~C~n~~g~y~C~C~~G~~g~~~~  174 (186)
T 1z1y_A          146 CNTDNEVCXNVEGVYXCQCMEGFTFDXEX  174 (186)
T ss_dssp             CCTTTEEEEEETTEEEEEECTTCEEETTT
T ss_pred             ccccCcceecCCCCeeeECCCCCccCccc
Confidence            9 889999999999999999999998764

>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A

Probab=99.83  E-value=2.4e-21  Score=156.06  Aligned_cols=149  Identities=26%  Similarity=0.675  Sum_probs=120.1

Q ss_pred             CCCCCCCCceeeCCCCeeeeCCCCCCCCCCCccceeeccCCCCCCCCccccCCCcccCceecCCCCccCCCCeeecCCCC
Q psy2857          66 DKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGSVCVDVDEC  145 (332)
Q Consensus        66 ~~~C~~~~~C~~~~~~~~C~C~~g~~~~~~~~~~c~~~~~~~~c~~~~~C~~~~~c~~~~c~C~~g~~~~g~~c~~~~~C  145 (332)
                      .++|. +++|+++.++|+|.|.+||.+..                                         +..|.++++|
T Consensus        10 ~~pC~-ng~C~~~~g~~~C~C~~G~~g~~-----------------------------------------~~~C~~id~C   47 (186)
T 1z1y_A           10 DTICX-NGQLVQMSNHFXCMCNEGLVHLS-----------------------------------------ENTCEEXNEC   47 (186)
T ss_dssp             TCCCB-TEEEEECSSCEEEEECTTEEEEE-----------------------------------------TTEEEECCCC
T ss_pred             CCCCC-CCEeECCCCCeEeECCCCCccCC-----------------------------------------CCccCCCCcc
Confidence            46787 45999999999999999997641                                         3456667777


Q ss_pred             CC---CCCCCCCCceecCC-----CceEeeCCCCCccCCCCccccccCcccceeeccccCcccccccCCcccccceeccc
Q psy2857         146 QL---GDPCGPQAQCTNTP-----GSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYETDYLHSVASDISDILTIIHEF  217 (332)
Q Consensus       146 ~~---~~~C~~~~~C~~~~-----~~~~C~C~~G~~g~~~~~~c~~~~c~~~~~c~~~~~~~~~~~~~~~~~~~c~c~~~  217 (332)
                      ..   .++|.++++|+++.     ++|.|.|++||.|...                                        
T Consensus        48 ~~~~~~~~C~~~~~C~~~~~~~~~g~y~C~C~~G~~g~~~----------------------------------------   87 (186)
T 1z1y_A           48 XXETLGXACGEFGQCIENPDPAQVNMYXCGCIEGYTLXED----------------------------------------   87 (186)
T ss_dssp             SGGGTTSEEETTEEEEECSSTTSSCSEEEEECTTEEEETT----------------------------------------
T ss_pred             cCCCCCCCCCCCCEeecCCCCcCCCCEECCCCCCCccCCC----------------------------------------
Confidence            62   46788889999998     8999999999987421                                        


Q ss_pred             ccceecccccEEecccCccccccccCccCCCCCCCCCeee----ecCCceeeecCCCcccCC--CCccccc--ccccCCC
Q psy2857         218 SRIFSKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATCI----DTQGSYSCVCKEHYTGDP--YQACSDI--DECKALD  289 (332)
Q Consensus       218 ~~~~~~~~~g~~~~~~~~~~~~~~~~~C~~~~C~~~~~C~----~~~~~~~C~C~~G~~g~~--~~~C~~~--d~C~~~~  289 (332)
                                          .+ .+++|...+|.++++|+    +..++|+|.|++||+|..  ...|+++  ++|.   
T Consensus        88 --------------------~C-~~d~C~~~~C~~~g~C~~~~~~~~g~~~C~C~~Gy~g~~~~~~~C~~~~~~~C~---  143 (186)
T 1z1y_A           88 --------------------TC-VLDVCQYXNCGESGECIVEYLSEIQSAGCSCAIGXVPNPEDEXXCTXTGETACQ---  143 (186)
T ss_dssp             --------------------EE-EEGGGTTCCCCTTEEEEEEEETTEEEEEEEECTEEEEETTTTTEEEEEECCCCC---
T ss_pred             --------------------CC-CCCcCcCCCCCCCCEEeeCCcCCCCCceEECCCCCcccCCCCCcceEcCCCccc---
Confidence                                01 14678888899999999    888899999999999942  2458776  7896   


Q ss_pred             CCC-CCCCeeecCCCceeeeCCCCCCCCCCCC
Q psy2857         290 KPC-GLRAICENTVPGFNCLCPKGYSGKPDAK  320 (332)
Q Consensus       290 ~~C-~~~~~C~~~~g~~~C~C~~g~~g~~~~~  320 (332)
                      .+| .++++|+++.++|+|.|++||+|+....
T Consensus       144 ~~C~~~~~~C~n~~g~y~C~C~~G~~g~~~~~  175 (186)
T 1z1y_A          144 LXCNTDNEVCXNVEGVYXCQCMEGFTFDXEXN  175 (186)
T ss_dssp             CCCCTTTEEEEEETTEEEEEECTTCEEETTTT
T ss_pred             ccccccCcceecCCCCeeeECCCCCccCcccc
Confidence            389 8899999999999999999999997655

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.82  E-value=1.2e-19  Score=137.99  Aligned_cols=131  Identities=37%  Similarity=0.834  Sum_probs=99.5

Q ss_pred             CCCcccccCCCCCCCCCCceeeCCCCeeeeCCCCCCCCCCCccceeeccCCCCCCCCccccCCCcccCceecCCCCccCC
Q psy2857          56 CSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDAR  135 (332)
Q Consensus        56 C~~~~~c~~~~~~C~~~~~C~~~~~~~~C~C~~g~~~~~~~~~~c~~~~~~~~c~~~~~C~~~~~c~~~~c~C~~g~~~~  135 (332)
                      |+++++|.....+|.++++|+++.++|.|.|.+||.|.     .|+                                  
T Consensus         2 c~dideC~~~~~~C~~~g~C~~~~g~~~C~C~~Gy~G~-----~C~----------------------------------   42 (135)
T 2vj3_A            2 AQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP-----RCE----------------------------------   42 (135)
T ss_dssp             -CCCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEEST-----TSC----------------------------------
T ss_pred             CcccccccCCCCCCCCCCEeECCCCCEEEECCCCCcCC-----ccc----------------------------------
Confidence            57899998656899999999999999999999999875     221                                  


Q ss_pred             CCeeecCCCCCCCCCCCCCCceecCCCceEeeCCCCCccCCCCccccccCcccceeeccccCcccccccCCcccccceec
Q psy2857         136 GSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYETDYLHSVASDISDILTIIH  215 (332)
Q Consensus       136 g~~c~~~~~C~~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~~c~~~~c~~~~~c~~~~~~~~~~~~~~~~~~~c~c~  215 (332)
                          .++++|. .++|.++++|++..++|.|.|++||.|..+                                      
T Consensus        43 ----~~~~~C~-~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C--------------------------------------   79 (135)
T 2vj3_A           43 ----IDVNECV-SNPCQNDATCLDQIGEFQCICMPGYEGVHC--------------------------------------   79 (135)
T ss_dssp             ----EECCTTT-TCCCCSSCEEEECSSCEEEECCTTEESSSS--------------------------------------
T ss_pred             ----ccCccCC-CCCCCCCCEEeCCCCCceeeCCCCCcCCcc--------------------------------------
Confidence                1345665 467888899999999999999999987421                                      


Q ss_pred             ccccceecccccEEecccCccccccccCccCCCCCCCCCeeeecCCceeeecCCCcccCCCCcccccccccCCCCCCC
Q psy2857         216 EFSRIFSKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCG  293 (332)
Q Consensus       216 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~C~~~d~C~~~~~~C~  293 (332)
                                             ..++++|...+|.++++|++..++|+|.|++||+|..++  .+|++|...++.|.
T Consensus        80 -----------------------~~~~~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~G~~C~--~~i~~C~~~~~~c~  132 (135)
T 2vj3_A           80 -----------------------EVNTDECASSPCLHNGRCLDKINEFQCECPTGFTGHLCQ--VDLHHILDAQKMVW  132 (135)
T ss_dssp             -----------------------CEECCTTTTCCSTTTCEEEECSSCEEEECCTTEESSSSC--EECC----------
T ss_pred             -----------------------eecCCcccCCCcCCCCEeECCCCCeEEECCCCCcCCccC--ccCccccCCCccee
Confidence                                   124577888899999999999999999999999998665  58999987666554

>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A*

Probab=99.80  E-value=3.3e-19  Score=135.63  Aligned_cols=115  Identities=42%  Similarity=0.999  Sum_probs=98.5

Q ss_pred             eecCCCCCC-CCCCCCCCceecCCCceEeeCCCCCccCCCCccccccCcccceeeccccCcccccccCCcccccceeccc
Q psy2857         139 CVDVDECQL-GDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYETDYLHSVASDISDILTIIHEF  217 (332)
Q Consensus       139 c~~~~~C~~-~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~~c~~~~c~~~~~c~~~~~~~~~~~~~~~~~~~c~c~~~  217 (332)
                      +.++++|+. .++|.++++|+++.++|.|.|++||.|..+                                        
T Consensus         2 c~dideC~~~~~~C~~~g~C~~~~g~~~C~C~~Gy~G~~C----------------------------------------   41 (135)
T 2vj3_A            2 AQDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRC----------------------------------------   41 (135)
T ss_dssp             -CCCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEESTTS----------------------------------------
T ss_pred             CcccccccCCCCCCCCCCEeECCCCCEEEECCCCCcCCcc----------------------------------------
Confidence            457889973 578999999999999999999999987421                                        


Q ss_pred             ccceecccccEEecccCccccccccCccCCCCCCCCCeeeecCCceeeecCCCcccCCCCcccccccccCCCCCCCCCCe
Q psy2857         218 SRIFSKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAI  297 (332)
Q Consensus       218 ~~~~~~~~~g~~~~~~~~~~~~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~C~~~d~C~~~~~~C~~~~~  297 (332)
                                           ..++++|...+|.++++|++..++|+|.|++||+|..++  .++++|..  .+|.++++
T Consensus        42 ---------------------~~~~~~C~~~~C~~~~~C~~~~g~~~C~C~~G~~G~~C~--~~~~~C~~--~~C~~~g~   96 (135)
T 2vj3_A           42 ---------------------EIDVNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCE--VNTDECAS--SPCLHNGR   96 (135)
T ss_dssp             ---------------------CEECCTTTTCCCCSSCEEEECSSCEEEECCTTEESSSSC--EECCTTTT--CCSTTTCE
T ss_pred             ---------------------cccCccCCCCCCCCCCEEeCCCCCceeeCCCCCcCCcce--ecCCcccC--CCcCCCCE
Confidence                                 235678888899999999999999999999999998654  57899975  68999999


Q ss_pred             eecCCCceeeeCCCCCCCCCC
Q psy2857         298 CENTVPGFNCLCPKGYSGKPD  318 (332)
Q Consensus       298 C~~~~g~~~C~C~~g~~g~~~  318 (332)
                      |++..++|+|.|++||+|...
T Consensus        97 C~~~~g~~~C~C~~G~~G~~C  117 (135)
T 2vj3_A           97 CLDKINEFQCECPTGFTGHLC  117 (135)
T ss_dssp             EEECSSCEEEECCTTEESSSS
T ss_pred             eECCCCCeEEECCCCCcCCcc
Confidence            999999999999999998743

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=99.78  E-value=1.4e-22  Score=167.53  Aligned_cols=222  Identities=8%  Similarity=0.018  Sum_probs=151.1

Q ss_pred             eeeeCCCCeEeeCCCC---CccCCCCCCCCcccccCCCCCCCCCCceeeCCCCeeeeCCCCCCCCCCCccceeeccCCCC
Q psy2857          32 TCIDTQGSYSCVCKEH---YTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSE  108 (332)
Q Consensus        32 ~C~~~~g~~~C~C~~G---~~g~~~~~C~~~~~c~~~~~~C~~~~~C~~~~~~~~C~C~~g~~~~~~~~~~c~~~~~~~~  108 (332)
                      ++.|.+|+|.+.+.+|   |.|...+  +++..+.   .+|.++++|++..++|.|.|+.||+|..+...+ ...+ ...
T Consensus         5 ~~~n~~Gg~s~~~~pgg~~~~g~~~~--~n~~~~~---~~c~ngG~C~~g~~~y~C~Cp~Gf~G~~Ce~ni-~ec~-~~~   77 (267)
T 4fbr_A            5 LVQNQWGGSQATWNPGGLWLIGARDK--QNVVALD---IKSDDGGKTLKGTMTYNGEGPIGFRGTLSSANN-YTVE-NQW   77 (267)
T ss_dssp             EEEEECSSTTSCCEEEEEEECCCCSS--CCEEEEE---EECSSTTSEEEEEEEETTSCCEEEEEEECSTTE-EEEE-EES
T ss_pred             eEeecCCcccCCcCCCCceeeccccc--cccccCC---CCcCCCCeecCCCCCeEEeCCCCcccccccccc-cccc-ccc
Confidence            4677889999999888   4443332  2333332   478899999999999999999999998543210 0000 012


Q ss_pred             CCCCccccCCCcccCceecCCCCccCCCCeeecCCCCCCCCCCCCCCceecCCCceEeeCCCCCccCCCCcc---cccc-
Q psy2857         109 CSSNFECVNNAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIK---CKDV-  184 (332)
Q Consensus       109 c~~~~~C~~~~~c~~~~c~C~~g~~~~g~~c~~~~~C~~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~~---c~~~-  184 (332)
                      +-...+|.+.++++          .  |..|...++|+ +.+|.++++|++...+|+|.|+.||+|..+...   |... 
T Consensus        78 ~c~s~pC~nggtc~----------~--G~~c~~~~eC~-s~pC~ngG~C~~~~~sy~C~C~~Gf~G~~Ce~~~d~C~n~~  144 (267)
T 4fbr_A           78 GGTSAPWQPGGVWV----------L--GARDKQNIVAV-SIKSNDGGKTLTGTTTYNGEGPIGFKSEVTDGDTYSVENQW  144 (267)
T ss_dssp             SSTTSCEEEEEEEE----------C--CCCSSCCEEEE-EEECSSTTSEEEEEEEETTSCCEEEEEEECCCCEEEEEEEC
T ss_pred             CcCCCcccCCCeee----------c--cCccccccccC-CCCCCCCCEEecCCccEEeeCCCCccccCCCCCcccccccC
Confidence            22334666665542          2  66676667886 688999999999999999999999999766542   2222 


Q ss_pred             -----CcccceeeccccCcccccccCCcccccceecccccceecccccEEecccCccccccccCccCCCCCCCCCeeeec
Q psy2857         185 -----RWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATCIDT  259 (332)
Q Consensus       185 -----~c~~~~~c~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~C~~~~C~~~~~C~~~  259 (332)
                           +|.+..++.                                   .+..+     ...+ .|.+.+|.++++|++.
T Consensus       145 ~c~s~pC~ngg~c~-----------------------------------~G~~c-----~~~i-~c~~~~c~ngg~C~dg  183 (267)
T 4fbr_A          145 GGSAAPWHSGGVWV-----------------------------------LGTRG-----KQNV-INVDAKSNDGGKTLSG  183 (267)
T ss_dssp             SSTTSCCEEEEEEE-----------------------------------CCSST-----TSCE-EEEEEECSSTTSEEEE
T ss_pred             CcCCccccCCccee-----------------------------------ccccc-----cccc-ccCCCCCCCCCEeeCC
Confidence                 232222222                                   11111     1222 3556789999999999


Q ss_pred             CCceeeecCCCcccCCCCcccccccccC---------------------C------CCCCCCCCeeecCCCceeeeCCCC
Q psy2857         260 QGSYSCVCKEHYTGDPYQACSDIDECKA---------------------L------DKPCGLRAICENTVPGFNCLCPKG  312 (332)
Q Consensus       260 ~~~~~C~C~~G~~g~~~~~C~~~d~C~~---------------------~------~~~C~~~~~C~~~~g~~~C~C~~g  312 (332)
                      ..+|+|.|++||+|..++  .++++|..                     .      ..+|.++++|++...+|.|.||+|
T Consensus       184 ~~~y~C~Cp~Gf~G~~c~--~~i~ec~~~~~c~~~~c~~gG~~~~~C~~g~n~~~c~~~c~ngGtC~dg~~sy~CeCp~G  261 (267)
T 4fbr_A          184 TMTYNGEGPIGFRGTLTS--PDTYTVENQWGGSTAPWNPGGFWMIGARNGQNVVALNVASSDGGKTLAGTMIYNGEGPIG  261 (267)
T ss_dssp             EEEETTSCCEEEEEEEEE--TTEEEEEEECSCTTSCCEEEEEEECCCCTTCCEEEEEEECSSTTSEEEEEEEETTSCCEE
T ss_pred             CCCeEEeCCCCccccccc--cccceeccCCCccCCcccCCCeEEEecCCCCccccCCcCCCCCCEeeCCCcceeecCCCC
Confidence            999999999999997554  34555211                     0      116778889999989999999999


Q ss_pred             CCCC
Q psy2857         313 YSGK  316 (332)
Q Consensus       313 ~~g~  316 (332)
                      |+|.
T Consensus       262 F~G~  265 (267)
T 4fbr_A          262 FRAR  265 (267)
T ss_dssp             EEEE
T ss_pred             cccc
Confidence            9874

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=99.77  E-value=7e-19  Score=135.33  Aligned_cols=125  Identities=29%  Similarity=0.648  Sum_probs=100.6

Q ss_pred             CCCCCCCCceecCCCceEeeCCCCCccCCCCccccccCcccceeeccccCcccccccCCcccccceecccccceeccccc
Q psy2857         148 GDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKL  227 (332)
Q Consensus       148 ~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~~c~~~~c~~~~~c~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~~~g  227 (332)
                      .++|.++++|++.   |.|.|++||.|......                                               
T Consensus         6 ~~~C~~~~~C~~~---~~C~C~~G~~g~~~~~~-----------------------------------------------   35 (143)
T 2bou_A            6 ARWCPQDSSCVNA---TACRCNPGFSSFSEIIT-----------------------------------------------   35 (143)
T ss_dssp             CTTCCTTEEESSS---SCEEECTTEECSSSSBC-----------------------------------------------
T ss_pred             cCcCCCCCEEcCC---CEEeCCCCCcCcccccc-----------------------------------------------
Confidence            3678888999875   79999999998520000                                               


Q ss_pred             EEecccCccccccccCccCCC---CCCCCCeeeecCCceeeecCCCcccCCC---------CcccccccccCCCCCCCCC
Q psy2857         228 FVIEDAKRNLNRVDINECQSN---PCGVNATCIDTQGSYSCVCKEHYTGDPY---------QACSDIDECKALDKPCGLR  295 (332)
Q Consensus       228 ~~~~~~~~~~~~~~~~~C~~~---~C~~~~~C~~~~~~~~C~C~~G~~g~~~---------~~C~~~d~C~~~~~~C~~~  295 (332)
                            .....+.++++|...   +|.++++|+++.++|+|.|++||+|...         ..|+|||+|....++|.++
T Consensus        36 ------~~~~~C~dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~~~~~~~~~~~C~dideC~~~~~~C~~~  109 (143)
T 2bou_A           36 ------TPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAKTFKNESENTCQDVDECSSGQHQCDSS  109 (143)
T ss_dssp             ------STTCCCEECCGGGC----CCCTTEEEEECSSCEEEEECTTEEETTCCSCBSSGGGCCEEECCHHHHTCCCCCTT
T ss_pred             ------CCCCcCCccccccCCCCCCCCCCCEEEcCCCCeEeECCCCcccCcCccccccCCCCCcCCccCccCcCCCCCCC
Confidence                  001235678899864   8998999999999999999999999854         2689999998767899999


Q ss_pred             CeeecCCCceeeeCCCCCCCCCCCCccccccccC
Q psy2857         296 AICENTVPGFNCLCPKGYSGKPDAKVACEQEKAG  329 (332)
Q Consensus       296 ~~C~~~~g~~~C~C~~g~~g~~~~~~~c~~~~~~  329 (332)
                      ++|+++.++|+|.|++||+|....+ .|.++...
T Consensus       110 ~~C~n~~g~y~C~C~~Gy~g~~~~~-~C~~~~~C  142 (143)
T 2bou_A          110 TVCFNTVGSYSCRCRPGWKPRHGIP-NNQKDTVC  142 (143)
T ss_dssp             SEEEECSSCEEEECCSSSCBCTTCC-SSBTTCCB
T ss_pred             CEEECCCCCEEeeCCCCcccCCCCc-cCccCCcc
Confidence            9999999999999999999998765 78776654

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=99.75  E-value=6.9e-18  Score=129.93  Aligned_cols=123  Identities=29%  Similarity=0.690  Sum_probs=94.7

Q ss_pred             CCCCCCCCCCCCceecCC--CceEeeCCCCCccCCCCccccccCcccceeeccccCcccccccCCcccccceecccccce
Q psy2857         144 ECQLGDPCGPQAQCTNTP--GSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIF  221 (332)
Q Consensus       144 ~C~~~~~C~~~~~C~~~~--~~~~C~C~~G~~g~~~~~~c~~~~c~~~~~c~~~~~~~~~~~~~~~~~~~c~c~~~~~~~  221 (332)
                      +|. +++|.++++|++..  ++|.|.|++||.|..+...-   .+                                   
T Consensus         2 ~C~-~~pC~~~g~C~~~~~~g~~~C~C~~G~~G~~C~~~~---~~-----------------------------------   42 (143)
T 4d90_A            2 ICD-PNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVV---EV-----------------------------------   42 (143)
T ss_dssp             -CC-SCCCGGGCEEEC-----CCEEECCTTCCTTTTCSCC---CC-----------------------------------
T ss_pred             cCC-CCcCCCCCEeeCCCCCCCEEeECCCCCCCCCCccCc---cc-----------------------------------
Confidence            564 67899999999876  68999999999986543210   00                                   


Q ss_pred             ecccccEEecccCccccccccCccCCCCCCCCCeee-------ecCCceeeecCCCcccCCCCcccccccccCCCCCCCC
Q psy2857         222 SKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATCI-------DTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGL  294 (332)
Q Consensus       222 ~~~~~g~~~~~~~~~~~~~~~~~C~~~~C~~~~~C~-------~~~~~~~C~C~~G~~g~~~~~C~~~d~C~~~~~~C~~  294 (332)
                                 ......+.++++|...+|.++++|+       +..++|+|+|++||+|..++  .++|+|..  .+|.+
T Consensus        43 -----------~~~~~~c~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~C~C~~G~~G~~C~--~~i~~C~~--~~C~~  107 (143)
T 4d90_A           43 -----------ASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCKCPRGFNGIHCQ--HNINECEV--EPCKN  107 (143)
T ss_dssp             -----------TTTTTSCCCCCTTSSCCCCTTCEEEECCCEETTEECCEEEECCTTEESTTSC--EECCTTTT--CCSCT
T ss_pred             -----------cccccccccCCcCCCCCCCCCCEecCCCccccCCCCCeEeECcCCCcCCCcc--cCCCcCCC--CCCCC
Confidence                       0001234567889889999999999       67789999999999988544  48999985  68999


Q ss_pred             CCeeecCCCceeeeCCCCCCCCCCCC
Q psy2857         295 RAICENTVPGFNCLCPKGYSGKPDAK  320 (332)
Q Consensus       295 ~~~C~~~~g~~~C~C~~g~~g~~~~~  320 (332)
                      +++|+++.++|+|.|++||+|.....
T Consensus       108 ~~~C~~~~g~~~C~C~~G~~G~~c~~  133 (143)
T 4d90_A          108 GGICTDLVANYSCECPGEFMGRNCQY  133 (143)
T ss_dssp             TCEEEEETTEEEEECCTTCBSTTSCB
T ss_pred             CCEeECCCCCeEeECCCCCccCCcee
Confidence            99999999999999999999996644

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=99.72  E-value=1.1e-18  Score=137.04  Aligned_cols=148  Identities=30%  Similarity=0.656  Sum_probs=102.7

Q ss_pred             CCcccccCCCCCCCCCCceeeCCCCeeeeCCCCCCCCCCCccceeeccCCCCCCCCccccCCCcccCceecCCCCccCCC
Q psy2857          57 SDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARG  136 (332)
Q Consensus        57 ~~~~~c~~~~~~C~~~~~C~~~~~~~~C~C~~g~~~~~~~~~~c~~~~~~~~c~~~~~C~~~~~c~~~~c~C~~g~~~~g  136 (332)
                      +++|+|.. +.+|. +++|+++.++|+|.|++||.+....+ .|+                                   
T Consensus         1 ~dideC~~-~~~C~-~~~C~n~~gsy~C~C~~Gy~~~~~g~-~C~-----------------------------------   42 (162)
T 1uzk_A            1 TDVNECLD-PTTCI-SGNCVNTPGSYICDCPPDFELNPTRV-GCV-----------------------------------   42 (162)
T ss_dssp             CCCCGGGS-TTSSB-TSEEEEETTEEEEECCTTCEECTTSS-BEE-----------------------------------
T ss_pred             CccccCCC-CCCCC-CCEeECCCCCEEEeCCCCCeECCCCC-ccc-----------------------------------
Confidence            36889974 57896 78999999999999999998653222 333                                   


Q ss_pred             CeeecCCC--CC-CCCCC--CCCCceecCCC----ceEeeCCCCCccCCCCccccccCcccceeeccccCcccccccCCc
Q psy2857         137 SVCVDVDE--CQ-LGDPC--GPQAQCTNTPG----SFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYETDYLHSVASDI  207 (332)
Q Consensus       137 ~~c~~~~~--C~-~~~~C--~~~~~C~~~~~----~~~C~C~~G~~g~~~~~~c~~~~c~~~~~c~~~~~~~~~~~~~~~  207 (332)
                          ++++  |. ...+|  ...++|+++.+    .|.|.|++||....                               
T Consensus        43 ----d~~~~~C~~~~~~c~~~~~~~C~~~~~~~~~~~~C~C~~G~~~~~-------------------------------   87 (162)
T 1uzk_A           43 ----DTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCCSLGKAWGT-------------------------------   87 (162)
T ss_dssp             ----CCCCEEEEEEC----------CEEEEEEEECHHHHHTTTCCEETT-------------------------------
T ss_pred             ----CCCCCcccCCCcccCCCCCCcccCCcCCcccCceeeCCCCCCcCC-------------------------------
Confidence                2222  32 01122  23567887766    78899999887310                               


Q ss_pred             ccccceecccccceecccccEEecccCccccccccCccCCCCCCCCCeee-ecCCceeeecCC--CcccCCC-Ccccccc
Q psy2857         208 SDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATCI-DTQGSYSCVCKE--HYTGDPY-QACSDID  283 (332)
Q Consensus       208 ~~~~c~c~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~C~~~~C~~~~~C~-~~~~~~~C~C~~--G~~g~~~-~~C~~~d  283 (332)
                                                          .|.        .|. +..++|+|.|++  ||++... ..|+|||
T Consensus        88 ------------------------------------~C~--------~C~~~~~~~y~C~C~~g~G~~~~~~~~~c~did  123 (162)
T 1uzk_A           88 ------------------------------------PCE--------MCPAVNTSEYKILCPGGEGFRPNPITVILEDID  123 (162)
T ss_dssp             ------------------------------------TTE--------ECCCTTSHHHHHHCTTCTTEEECTTTCCEEECC
T ss_pred             ------------------------------------Ccc--------cCCCCCCCCceeECCCCCCcccCCCCCccCccc
Confidence                                                011        121 245679999998  9999754 3579999


Q ss_pred             cccCCCCCCCCCCeeecCCCceeeeCCCCCCCCCCCCccc
Q psy2857         284 ECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVAC  323 (332)
Q Consensus       284 ~C~~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~~~c  323 (332)
                      +|...+++|.+ ++|+|+.++|+|.|++||+|+...+ +|
T Consensus       124 eC~~~~~~C~~-g~C~n~~gsy~C~C~~Gy~g~~d~~-~C  161 (162)
T 1uzk_A          124 ECQELPGLCQG-GKCINTFGSFQCRCPTGYYLNEDTR-VC  161 (162)
T ss_dssp             HHHHCGGGGBT-SEEEECSSCEEEECCTTCCBCTTTC-BB
T ss_pred             cccCCCCCcCC-CEeEcCCCCEEeeCCCCccCCCCCC-cc
Confidence            99876678985 6999999999999999999998765 45

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=99.68  E-value=3.9e-18  Score=134.01  Aligned_cols=145  Identities=32%  Similarity=0.696  Sum_probs=104.6

Q ss_pred             ccCCcCCC-CCCCCCCeeeeCCCCeEeeCCCCCccCCC-CCCCCccc--ccCCCCCCC--CCCceeeCCC----CeeeeC
Q psy2857          17 VDINECQS-NPCGVNATCIDTQGSYSCVCKEHYTGDPY-QACSDIDE--CKALDKPCG--LRAICENTVP----GFNCLC   86 (332)
Q Consensus        17 ~~~~~C~~-~~C~~~g~C~~~~g~~~C~C~~G~~g~~~-~~C~~~~~--c~~~~~~C~--~~~~C~~~~~----~~~C~C   86 (332)
                      +|||+|.. .+|. +++|+++.++|+|.|++||++.+. ..|+++++  |...+.+|.  .++.|+++.+    +|.|.|
T Consensus         1 ~dideC~~~~~C~-~~~C~n~~gsy~C~C~~Gy~~~~~g~~C~d~~~~~C~~~~~~c~~~~~~~C~~~~~~~~~~~~C~C   79 (162)
T 1uzk_A            1 TDVNECLDPTTCI-SGNCVNTPGSYICDCPPDFELNPTRVGCVDTRSGNCYLDIRPRGDNGDTACSNEIGVGVSKASCCC   79 (162)
T ss_dssp             CCCCGGGSTTSSB-TSEEEEETTEEEEECCTTCEECTTSSBEECCCCEEEEEEC----------CEEEEEEEECHHHHHT
T ss_pred             CccccCCCCCCCC-CCEeECCCCCEEEeCCCCCeECCCCCcccCCCCCcccCCCcccCCCCCCcccCCcCCcccCceeeC
Confidence            47999984 7896 799999999999999999996532 56777776  765444443  4789998877    799999


Q ss_pred             CCCCC-CCCCCccceeeccCCCCCCCCccccCCCcccCceecCCC--CccCC--CCeeecCCCCCC-CCCCCCCCceecC
Q psy2857          87 PKGYS-GKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRP--GFDAR--GSVCVDVDECQL-GDPCGPQAQCTNT  160 (332)
Q Consensus        87 ~~g~~-~~~~~~~~c~~~~~~~~c~~~~~C~~~~~c~~~~c~C~~--g~~~~--g~~c~~~~~C~~-~~~C~~~~~C~~~  160 (332)
                      ..||. +.     .|+            .|.... -..++|.|++  ||.+.  +..|.++++|.. +++|.+ ++|+++
T Consensus        80 ~~G~~~~~-----~C~------------~C~~~~-~~~y~C~C~~g~G~~~~~~~~~c~dideC~~~~~~C~~-g~C~n~  140 (162)
T 1uzk_A           80 SLGKAWGT-----PCE------------MCPAVN-TSEYKILCPGGEGFRPNPITVILEDIDECQELPGLCQG-GKCINT  140 (162)
T ss_dssp             TTCCEETT-----TTE------------ECCCTT-SHHHHHHCTTCTTEEECTTTCCEEECCHHHHCGGGGBT-SEEEEC
T ss_pred             CCCCCcCC-----Ccc------------cCCCCC-CCCceeECCCCCCcccCCCCCccCccccccCCCCCcCC-CEeEcC
Confidence            99997 33     232            121111 1246788887  89854  357889999973 457875 699999


Q ss_pred             CCceEeeCCCCCccCCCCccc
Q psy2857         161 PGSFRCDCVEGYVGAPPRIKC  181 (332)
Q Consensus       161 ~~~~~C~C~~G~~g~~~~~~c  181 (332)
                      .++|.|.|++||.+....+.|
T Consensus       141 ~gsy~C~C~~Gy~g~~d~~~C  161 (162)
T 1uzk_A          141 FGSFQCRCPTGYYLNEDTRVC  161 (162)
T ss_dssp             SSCEEEECCTTCCBCTTTCBB
T ss_pred             CCCEEeeCCCCccCCCCCCcc
Confidence            999999999999998766655

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=99.67  E-value=1.5e-16  Score=147.85  Aligned_cols=115  Identities=34%  Similarity=0.814  Sum_probs=97.8

Q ss_pred             cCCCCCCCCCCCCCCceecCCC-ceEe-eCCCCCccCCCCccccccCcccceeeccccCcccccccCCcccccceecccc
Q psy2857         141 DVDECQLGDPCGPQAQCTNTPG-SFRC-DCVEGYVGAPPRIKCKDVRWEFNVTLLFYETDYLHSVASDISDILTIIHEFS  218 (332)
Q Consensus       141 ~~~~C~~~~~C~~~~~C~~~~~-~~~C-~C~~G~~g~~~~~~c~~~~c~~~~~c~~~~~~~~~~~~~~~~~~~c~c~~~~  218 (332)
                      ++++|. .++|.++++|+++.+ +|.| .|++||.|..                                          
T Consensus         2 DIDeC~-~nPC~~gg~C~n~~~Gsy~C~~C~~GytGdg------------------------------------------   38 (634)
T 1yo8_A            2 DPDGCL-SNPCFPGAQCSSFPDGSWSCGFCPVGFLGNG------------------------------------------   38 (634)
T ss_dssp             --CGGG-GCCSCTTCCEEECTTSCEEECCCCTTBCSCS------------------------------------------
T ss_pred             cccccC-CCCCCCCCEEecCCCCCeECCcCCCccCCCC------------------------------------------
Confidence            567886 689999999999885 5999 9999998641                                          


Q ss_pred             cceecccccEEecccCccccccccCccCCCC--CCCCC---eeeecCCceeee-cCCCcccCCCC------------ccc
Q psy2857         219 RIFSKHLKLFVIEDAKRNLNRVDINECQSNP--CGVNA---TCIDTQGSYSCV-CKEHYTGDPYQ------------ACS  280 (332)
Q Consensus       219 ~~~~~~~~g~~~~~~~~~~~~~~~~~C~~~~--C~~~~---~C~~~~~~~~C~-C~~G~~g~~~~------------~C~  280 (332)
                                        ..|.++++|...+  |.+++   +|+++.++|+|. |++||+|..+.            .|+
T Consensus        39 ------------------~~CeDiDEC~~~p~~C~~gg~~~~CvNt~gsY~C~~C~~Gy~G~~c~g~g~~~~~~dg~~C~  100 (634)
T 1yo8_A           39 ------------------THCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCE  100 (634)
T ss_dssp             ------------------SSCCBCCTTTTSCCCSCCCSSSCCEEECSSSEEECCCCTTEEECCCEESSSHHHHSCCCCEE
T ss_pred             ------------------CCccccccccCCCCcccCCccccceeeccCceecccCCCCcccCccccccccccccCCCccc
Confidence                              1244678898777  99888   999999999998 99999998753            489


Q ss_pred             ccccccCCCCCCCCCCeeecCC----CceeeeCCCCCCCC
Q psy2857         281 DIDECKALDKPCGLRAICENTV----PGFNCLCPKGYSGK  316 (332)
Q Consensus       281 ~~d~C~~~~~~C~~~~~C~~~~----g~~~C~C~~g~~g~  316 (332)
                      ++++|....++|.++++|+++.    ++|+|.|++||+|+
T Consensus       101 dideC~~~~~pC~~~~~Cvnt~~~~~GsY~C~C~~Gy~Gd  140 (634)
T 1yo8_A          101 PENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGD  140 (634)
T ss_dssp             ECCTTTTTCCCCCTTEEEEECCTTCSSSEEEEECTTEEES
T ss_pred             ccccccCCCcccccCccccccccccccceeeeccCCcccc
Confidence            9999998778999999999998    99999999999985

>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}

Probab=99.66  E-value=4.2e-16  Score=119.88  Aligned_cols=113  Identities=29%  Similarity=0.838  Sum_probs=82.8

Q ss_pred             CcCCCCCCCCCCeeeeCC--CCeEeeCCCCCccCCCCC----------CCCcccccCCCCCCCCCCcee-------eCCC
Q psy2857          20 NECQSNPCGVNATCIDTQ--GSYSCVCKEHYTGDPYQA----------CSDIDECKALDKPCGLRAICE-------NTVP   80 (332)
Q Consensus        20 ~~C~~~~C~~~g~C~~~~--g~~~C~C~~G~~g~~~~~----------C~~~~~c~~~~~~C~~~~~C~-------~~~~   80 (332)
                      |+|.++||.++++|++..  ++|.|.|++||+|..++.          |.++++|.  +.+|.+++.|+       ++.+
T Consensus         1 d~C~~~pC~~~g~C~~~~~~g~~~C~C~~G~~G~~C~~~~~~~~~~~~c~~~~~C~--~~~C~~~g~C~~~~~~~~~~~~   78 (143)
T 4d90_A            1 DICDPNPCENGGICLPGLADGSFSCECPDGFTDPNCSSVVEVASDEEEPTSAGPCT--PNPCHNGGTCEISEAYRGDTFI   78 (143)
T ss_dssp             --CCSCCCGGGCEEEC-----CCEEECCTTCCTTTTCSCCCCTTTTTSCCCCCTTS--SCCCCTTCEEEECCCEETTEEC
T ss_pred             CcCCCCcCCCCCEeeCCCCCCCEEeECCCCCCCCCCccCccccccccccccCCcCC--CCCCCCCCEecCCCccccCCCC
Confidence            578899999999999875  689999999999976642          22455664  35677777777       4445


Q ss_pred             CeeeeCCCCCCCCCCCccceeeccCCCCCCCCccccCCCcccCceecCCCCccCCCCeee-cCCCCCCCCCCCCCCceec
Q psy2857          81 GFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGSVCV-DVDECQLGDPCGPQAQCTN  159 (332)
Q Consensus        81 ~~~C~C~~g~~~~~~~~~~c~~~~~~~~c~~~~~C~~~~~c~~~~c~C~~g~~~~g~~c~-~~~~C~~~~~C~~~~~C~~  159 (332)
                      +|.|.|.+||.|                                            ..|. ++++|. .++|.++++|++
T Consensus        79 ~~~C~C~~G~~G--------------------------------------------~~C~~~i~~C~-~~~C~~~~~C~~  113 (143)
T 4d90_A           79 GYVCKCPRGFNG--------------------------------------------IHCQHNINECE-VEPCKNGGICTD  113 (143)
T ss_dssp             CEEEECCTTEES--------------------------------------------TTSCEECCTTT-TCCSCTTCEEEE
T ss_pred             CeEeECcCCCcC--------------------------------------------CCcccCCCcCC-CCCCCCCCEeEC
Confidence            666666666654                                            3443 567786 678999999999


Q ss_pred             CCCceEeeCCCCCccCCCCc
Q psy2857         160 TPGSFRCDCVEGYVGAPPRI  179 (332)
Q Consensus       160 ~~~~~~C~C~~G~~g~~~~~  179 (332)
                      +.++|.|.|++||.|..+..
T Consensus       114 ~~g~~~C~C~~G~~G~~c~~  133 (143)
T 4d90_A          114 LVANYSCECPGEFMGRNCQY  133 (143)
T ss_dssp             ETTEEEEECCTTCBSTTSCB
T ss_pred             CCCCeEeECCCCCccCCcee
Confidence            99999999999999986543

>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A*

Probab=99.64  E-value=5.4e-16  Score=144.21  Aligned_cols=156  Identities=33%  Similarity=0.735  Sum_probs=112.5

Q ss_pred             CcccccCCCCCCCCCCceeeCCCC-eee-eCCCCCCCCCCCccceeeccCCCCCCCCccccCCCcccCceecCCCCccCC
Q psy2857          58 DIDECKALDKPCGLRAICENTVPG-FNC-LCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDAR  135 (332)
Q Consensus        58 ~~~~c~~~~~~C~~~~~C~~~~~~-~~C-~C~~g~~~~~~~~~~c~~~~~~~~c~~~~~C~~~~~c~~~~c~C~~g~~~~  135 (332)
                      ++++|.  .++|.+++.|+++.++ |+| .|++||.|.                                          
T Consensus         2 DIDeC~--~nPC~~gg~C~n~~~Gsy~C~~C~~GytGd------------------------------------------   37 (634)
T 1yo8_A            2 DPDGCL--SNPCFPGAQCSSFPDGSWSCGFCPVGFLGN------------------------------------------   37 (634)
T ss_dssp             --CGGG--GCCSCTTCCEEECTTSCEEECCCCTTBCSC------------------------------------------
T ss_pred             cccccC--CCCCCCCCEEecCCCCCeECCcCCCccCCC------------------------------------------
Confidence            578886  4789999999998854 999 899998763                                          


Q ss_pred             CCeeecCCCCCC-CCCCCCCC---ceecCCCceEee-CCCCCccCCCCccccccCcccceeeccccCcccccccCCcccc
Q psy2857         136 GSVCVDVDECQL-GDPCGPQA---QCTNTPGSFRCD-CVEGYVGAPPRIKCKDVRWEFNVTLLFYETDYLHSVASDISDI  210 (332)
Q Consensus       136 g~~c~~~~~C~~-~~~C~~~~---~C~~~~~~~~C~-C~~G~~g~~~~~~c~~~~c~~~~~c~~~~~~~~~~~~~~~~~~  210 (332)
                      +..|.++++|.. +..|.+++   +|+++.++|.|. |++||.|..+...  .+.                         
T Consensus        38 g~~CeDiDEC~~~p~~C~~gg~~~~CvNt~gsY~C~~C~~Gy~G~~c~g~--g~~-------------------------   90 (634)
T 1yo8_A           38 GTHCEDLDECALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGV--GLE-------------------------   90 (634)
T ss_dssp             SSSCCBCCTTTTSCCCSCCCSSSCCEEECSSSEEECCCCTTEEECCCEES--SSH-------------------------
T ss_pred             CCCccccccccCCCCcccCCccccceeeccCceecccCCCCcccCccccc--ccc-------------------------
Confidence            345566778862 23498888   999999999998 9999998643210  000                         


Q ss_pred             cceecccccceecccccEEecccCccccccccCccCC--CCCCCCCeeeecC----CceeeecCCCcccCCCCccc---c
Q psy2857         211 LTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQS--NPCGVNATCIDTQ----GSYSCVCKEHYTGDPYQACS---D  281 (332)
Q Consensus       211 ~c~c~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~C~~--~~C~~~~~C~~~~----~~~~C~C~~G~~g~~~~~C~---~  281 (332)
                                      .    .......|.++++|..  .+|.++++|++..    ++|+|.|++||+|... .|+   +
T Consensus        91 ----------------~----~~~dg~~C~dideC~~~~~pC~~~~~Cvnt~~~~~GsY~C~C~~Gy~GdG~-~Ce~d~D  149 (634)
T 1yo8_A           91 ----------------A----AKTEKQVCEPENPCKDKTHNCHKHAECIYLGHFSDPMYKCECQTGYAGDGL-ICGEDSD  149 (634)
T ss_dssp             ----------------H----HHSCCCCEEECCTTTTTCCCCCTTEEEEECCTTCSSSEEEEECTTEEESSS-SEEECTT
T ss_pred             ----------------c----cccCCCcccccccccCCCcccccCccccccccccccceeeeccCCccccCc-ccccccC
Confidence                            0    0001234667899975  5899999999998    9999999999998543 464   8


Q ss_pred             cccccCCCCCCCCCCeeecCCCceeee---CCCC
Q psy2857         282 IDECKALDKPCGLRAICENTVPGFNCL---CPKG  312 (332)
Q Consensus       282 ~d~C~~~~~~C~~~~~C~~~~g~~~C~---C~~g  312 (332)
                      +++|....+.|..+       ++|.|.   |+.+
T Consensus       150 iDeC~~~~~~C~~~-------~~y~C~~dnC~~~  176 (634)
T 1yo8_A          150 LDGWPNLNLVCATN-------ATYHCIKDNCPHL  176 (634)
T ss_dssp             SSSSCSSCCTTTTT-------CSSSCSCCSSTTS
T ss_pred             cccccCCCCcccCC-------CCccccccccccc
Confidence            99998777777632       456665   6654

>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A

Probab=99.64  E-value=2.9e-16  Score=120.65  Aligned_cols=124  Identities=30%  Similarity=0.690  Sum_probs=98.5

Q ss_pred             CCCCCCCeeeeCCCCeEeeCCCCCccCC------CCCCCCcccccCCC-CCCCCCCceeeCCCCeeeeCCCCCCCCCCCc
Q psy2857          25 NPCGVNATCIDTQGSYSCVCKEHYTGDP------YQACSDIDECKALD-KPCGLRAICENTVPGFNCLCPKGYSGKPDAK   97 (332)
Q Consensus        25 ~~C~~~g~C~~~~g~~~C~C~~G~~g~~------~~~C~~~~~c~~~~-~~C~~~~~C~~~~~~~~C~C~~g~~~~~~~~   97 (332)
                      .+|..+++|+++   |.|+|++||+|..      ...|+++++|.... .+|..++.|+++.++|.|.|.+||.+.....
T Consensus         7 ~~C~~~~~C~~~---~~C~C~~G~~g~~~~~~~~~~~C~dideC~~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~~~~   83 (143)
T 2bou_A            7 RWCPQDSSCVNA---TACRCNPGFSSFSEIITTPMETCDDINECATLSKVSCGKFSDCWNTEGSYDCVCSPGYEPVSGAK   83 (143)
T ss_dssp             TTCCTTEEESSS---SCEEECTTEECSSSSBCSTTCCCEECCGGGC----CCCTTEEEEECSSCEEEEECTTEEETTCCS
T ss_pred             CcCCCCCEEcCC---CEEeCCCCCcCccccccCCCCcCCccccccCCCCCCCCCCCEEEcCCCCeEeECCCCcccCcCcc
Confidence            579999999985   7999999999852      35788999998632 3799899999999999999999999874322


Q ss_pred             cceeeccCCCCCCCCccccCCCcccCceecCCCCccCCCCeeecCCCCCC-CCCCCCCCceecCCCceEeeCCCCCccCC
Q psy2857          98 VACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGSVCVDVDECQL-GDPCGPQAQCTNTPGSFRCDCVEGYVGAP  176 (332)
Q Consensus        98 ~~c~~~~~~~~c~~~~~C~~~~~c~~~~c~C~~g~~~~g~~c~~~~~C~~-~~~C~~~~~C~~~~~~~~C~C~~G~~g~~  176 (332)
                      .                +.+                ..+..|.++++|.. .++|.++++|+++.++|.|.|++||.+..
T Consensus        84 ~----------------~~~----------------~~~~~C~dideC~~~~~~C~~~~~C~n~~g~y~C~C~~Gy~g~~  131 (143)
T 2bou_A           84 T----------------FKN----------------ESENTCQDVDECSSGQHQCDSSTVCFNTVGSYSCRCRPGWKPRH  131 (143)
T ss_dssp             C----------------BSS----------------GGGCCEEECCHHHHTCCCCCTTSEEEECSSCEEEECCSSSCBCT
T ss_pred             c----------------ccc----------------CCCCCcCCccCccCcCCCCCCCCEEECCCCCEEeeCCCCcccCC
Confidence            0                000                11567888899973 47899999999999999999999999988


Q ss_pred             CCccccc
Q psy2857         177 PRIKCKD  183 (332)
Q Consensus       177 ~~~~c~~  183 (332)
                      ....|.+
T Consensus       132 ~~~~C~~  138 (143)
T 2bou_A          132 GIPNNQK  138 (143)
T ss_dssp             TCCSSBT
T ss_pred             CCccCcc
Confidence            7776654

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=99.64  E-value=6.8e-17  Score=119.49  Aligned_cols=110  Identities=31%  Similarity=0.620  Sum_probs=85.0

Q ss_pred             cCCCCCCCCCCCCCCceecC-CCceEeeCCCCCccCCCCccccccCcccceeeccccCcccccccCCcccccceeccccc
Q psy2857         141 DVDECQLGDPCGPQAQCTNT-PGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSR  219 (332)
Q Consensus       141 ~~~~C~~~~~C~~~~~C~~~-~~~~~C~C~~G~~g~~~~~~c~~~~c~~~~~c~~~~~~~~~~~~~~~~~~~c~c~~~~~  219 (332)
                      ++++|. .++|.+  +|+++ .++|.|.|++||.+.....          ..                            
T Consensus         3 dideC~-~~pC~~--~C~~~~~g~y~C~C~~Gy~g~~~~~----------~~----------------------------   41 (118)
T 1dx5_I            3 PVDPCF-RANCEY--QCQPLDQTSYLCVCAEGFAPIPHEP----------HR----------------------------   41 (118)
T ss_dssp             CCCGGG-GCCCSS--EEEECSSSCEEEECCTTEEEETTEE----------EE----------------------------
T ss_pred             ccccCC-CCCCCC--CCCCCCCCCEEeECCCCccccCCCC----------Cc----------------------------
Confidence            577886 678873  99999 8999999999999752100          00                            


Q ss_pred             ceecccccEEecccCccccccccCccCCCCCCCCCeeeecCCceeeecCCCcccCCCCcccccccccCCCCCCCCCCeee
Q psy2857         220 IFSKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE  299 (332)
Q Consensus       220 ~~~~~~~g~~~~~~~~~~~~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~C~~~d~C~~~~~~C~~~~~C~  299 (332)
                                         +.  ++|...+|.  +.|++ .++|+|.|++||++.....|++||+|.. .++|  +++|+
T Consensus        42 -------------------C~--~~C~~~~C~--~~C~~-~~~y~C~C~~Gy~~~~g~~C~dideC~~-~~~C--~~~C~   94 (118)
T 1dx5_I           42 -------------------CQ--MFCNQTACP--ADCDP-NTQASCECPEGYILDDGFICTDIDECEN-GGFC--SGVCH   94 (118)
T ss_dssp             -------------------EE--ECCCSSEEE--CEECT-TSTTCEECCTTEEEETTTEEEECCHHHH-CSSC--SSEEE
T ss_pred             -------------------cc--cccCCCCCC--CcccC-CCCeEeECCCCccCCCCCccccccccCC-CCCC--cCeEE
Confidence                               00  124445554  67888 5889999999999664457899999986 3689  68999


Q ss_pred             cCCCceeeeCCCCCCCCCC
Q psy2857         300 NTVPGFNCLCPKGYSGKPD  318 (332)
Q Consensus       300 ~~~g~~~C~C~~g~~g~~~  318 (332)
                      ++.++|+|.|++||+|...
T Consensus        95 n~~g~y~C~C~~G~~g~~~  113 (118)
T 1dx5_I           95 NLPGTFECICGPDSALAGQ  113 (118)
T ss_dssp             ECSSSEEEEECSSSSCEEE
T ss_pred             eCCCCEEEECCCCCccCCC
Confidence            9999999999999999865

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=99.64  E-value=1.3e-16  Score=125.96  Aligned_cols=62  Identities=31%  Similarity=0.842  Sum_probs=50.7

Q ss_pred             CCCCCeeeecCCceeeecCCCcccCCCCcccccccccCCCCCCCCCCeeecC-CCceeeeCCCCCCCCCC
Q psy2857         250 CGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENT-VPGFNCLCPKGYSGKPD  318 (332)
Q Consensus       250 C~~~~~C~~~~~~~~C~C~~G~~g~~~~~C~~~d~C~~~~~~C~~~~~C~~~-~g~~~C~C~~g~~g~~~  318 (332)
                      |. +++|+   ++|+|+|++||+|..++  .++++|.. ..+|.++++|+++ .++|+|.|++||+|...
T Consensus       105 C~-~g~C~---~~~~C~C~~G~~G~~C~--~~~~~C~~-~~~C~~~g~C~~~~~~~~~C~C~~G~~G~~C  167 (169)
T 2vj2_A          105 CV-HGICN---EPWQCLCETNWGGQLCD--KDLNYCGT-HQPCLNGGTCSNTGPDKYQCSCPEGYSGPNC  167 (169)
T ss_dssp             CS-SEECS---STTCCEECTTEETTTTC--EESCHHHH-TCCCCTTCEEEECSTTCEEEECCTTCCSTTS
T ss_pred             CC-CCCcC---CCCEEeCCCCCCCCccc--CCCCCCCC-CCCCCCCCEEcCCCCCCcEeECCCCCcCcCc
Confidence            54 34776   56899999999998654  48899975 4689999999996 88999999999999753

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=99.64  E-value=3.6e-17  Score=126.32  Aligned_cols=137  Identities=28%  Similarity=0.614  Sum_probs=90.2

Q ss_pred             cCCCCCCCCCCCCCCceecCCCceEeeCCCCCccCCCCccccccCcccceeeccccCcccccccCCcccccceecccccc
Q psy2857         141 DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRI  220 (332)
Q Consensus       141 ~~~~C~~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~~c~~~~c~~~~~c~~~~~~~~~~~~~~~~~~~c~c~~~~~~  220 (332)
                      ++++|. .++|.+ ++|+++.++|.|.|++||.+......|.+..   ...|.                      .    
T Consensus         3 dideC~-~~pC~n-g~C~n~~g~y~C~C~~G~~g~~~~~~C~~~~---~~~C~----------------------~----   51 (147)
T 2w86_A            3 DIDECE-SSPCIN-GVCKNSPGSFICECSSESTLDPTKTICIETI---KGTCW----------------------Q----   51 (147)
T ss_dssp             CCCGGG-GCCSBT-SEEEEETTEEEEECCTTEEECTTSSBEEECC---CEEEE----------------------E----
T ss_pred             cCccCc-CCCCCC-CEeECCCCCEEeECCCCcccCCCCCeecCCC---CCccc----------------------C----
Confidence            678887 578975 7999999999999999999987666665431   11111                      1    


Q ss_pred             eecccccEEecccCccccccccCccCC-------CCCCCCCeeeecCCceeeecCCCcccCCCCcccccccccCCCCCCC
Q psy2857         221 FSKHLKLFVIEDAKRNLNRVDINECQS-------NPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCG  293 (332)
Q Consensus       221 ~~~~~~g~~~~~~~~~~~~~~~~~C~~-------~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~C~~~d~C~~~~~~C~  293 (332)
                            +|.+..+     ..++++|..       .....+..|..  -.|.|.|++||++.....|+|||+|...+++|.
T Consensus        52 ------~~~g~~C-----~~~~~~c~~~~~C~~~~g~~~g~~C~~--c~~~C~C~~Gy~~~~g~~C~dideC~~~~~~C~  118 (147)
T 2w86_A           52 ------TVIDGRC-----EININGATLKSQCCSSLGAAWGSPCTL--CQVDPICGKGYSRIKGTQCEDIDECEVFPGVCK  118 (147)
T ss_dssp             ------EEETTEE-----EEEEEEEECHHHHHTTTCSEETTTTEE--CCCCTTTCTTEEEEETTEEEECCHHHHSTTCSS
T ss_pred             ------CCCCCcc-----ccCCCccccCCccccCcCcccCCCccc--CCCcccCCCccccCCCCccCccccccCCCCCCC
Confidence                  1211111     112222211       00001112221  237899999997533346889999998777898


Q ss_pred             CCCeeecCCCceeeeCCCCCCCCCCCCccc
Q psy2857         294 LRAICENTVPGFNCLCPKGYSGKPDAKVAC  323 (332)
Q Consensus       294 ~~~~C~~~~g~~~C~C~~g~~g~~~~~~~c  323 (332)
                      + ++|+|+.++|+|.|++||+|....+ .|
T Consensus       119 ~-g~C~n~~g~y~C~C~~Gy~g~~~~~-~C  146 (147)
T 2w86_A          119 N-GLCVNTRGSFKCQCPSGMTLDATGR-IC  146 (147)
T ss_dssp             S-SEEEEETTEEEEECCTTCCBCTTSS-CB
T ss_pred             C-CEEECCCCCEEeeCCCCCccCCCCC-ee
Confidence            5 5999999999999999999998765 44

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=99.63  E-value=3.1e-16  Score=136.29  Aligned_cols=156  Identities=31%  Similarity=0.780  Sum_probs=65.0

Q ss_pred             CCCCCCCCceeeCCCCeeeeCCCCCCCCCCCccceeeccCCCCCCCCccccCCCcccC-ceecCCCCccCCCCeeecCCC
Q psy2857          66 DKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVD-GLCYCRPGFDARGSVCVDVDE  144 (332)
Q Consensus        66 ~~~C~~~~~C~~~~~~~~C~C~~g~~~~~~~~~~c~~~~~~~~c~~~~~C~~~~~c~~-~~c~C~~g~~~~g~~c~~~~~  144 (332)
                      +.+|.+++.|++   .+.|.|.+||.|..+...         .|..  .|.+++.|+. +.|.|.+||.  |..|.. ..
T Consensus       152 ~~~C~~~G~C~~---~~~C~C~~G~~G~~C~~~---------~C~~--~C~~~G~C~~~~~C~C~~G~~--G~~C~~-~~  214 (324)
T 2ygq_A          152 PGGCRNGGFCNE---RRICECPDGFHGPHCEKA---------LCTP--RCMNGGLCVTPGFCICPPGFY--GVNCDK-AN  214 (324)
T ss_dssp             SSCCCSSCEECT---TSCEECCTTEESSSSCEE---------SSSS--CCCTTCEECSSCCEECCTTCB--TTTTCB-CC
T ss_pred             CCCCCCCCEECC---CCeEECCCCCcCCCCCCC---------CCCC--CCCCCCEEcCCCEEeCCCCcc--CCCccc-Cc
Confidence            357888899975   368999999999744321         2332  5777777765 6899999998  677753 34


Q ss_pred             CCCCCCCCCCCceecCCCceEeeCCCCCccCCCCccccccCcccceeeccccCcccccccCCcccccceecccccceecc
Q psy2857         145 CQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKH  224 (332)
Q Consensus       145 C~~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~~c~~~~c~~~~~c~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~  224 (332)
                      |.  .+|.++++|++.   +.|.|++||.|..++                                              
T Consensus       215 C~--~~C~~~G~C~~~---~~C~C~~G~~G~~C~----------------------------------------------  243 (324)
T 2ygq_A          215 CS--TTCFNGGTCFYP---GKCICPPGLEGEQCE----------------------------------------------  243 (324)
T ss_dssp             CS--SCCCSSCCBSCS---SCBCCCTTCCTTTTC----------------------------------------------
T ss_pred             CC--CCCCCCCeeCCC---CeeeCCCCccCCCCC----------------------------------------------
Confidence            64  578888888763   589999999875332                                              


Q ss_pred             cccEEecccCccccccccCccCCCCCCCCCeeeecCCceeeecCCCcccCCCCcccccccccCCCCCCCCCCeeecCCCc
Q psy2857         225 LKLFVIEDAKRNLNRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPG  304 (332)
Q Consensus       225 ~~g~~~~~~~~~~~~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~C~~~d~C~~~~~~C~~~~~C~~~~g~  304 (332)
                                       +++|. .+|.++++|+.   .++|.|++||+|..++    +++|.   .+|.++++|++   .
T Consensus       244 -----------------~~~C~-~~C~~~g~C~~---~~~C~C~~G~~G~~C~----~~~C~---~~C~~~g~C~~---~  292 (324)
T 2ygq_A          244 -----------------ISKCP-QPCRNGGKCIG---KSKCKCSKGYQGDLCS----KPVCE---PGCGAHGTCHE---P  292 (324)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -----------------cCcCC-CcCCCCCEECC---CCEEECCCCCcCCCCc----CCCCC---CCCCCCCEECC---C
Confidence                             12233 46778888874   4799999999998765    46675   47988899986   4


Q ss_pred             eeeeCCCCCCCCCCCC
Q psy2857         305 FNCLCPKGYSGKPDAK  320 (332)
Q Consensus       305 ~~C~C~~g~~g~~~~~  320 (332)
                      +.|.|++||+|..+..
T Consensus       293 ~~C~C~~G~~G~~C~~  308 (324)
T 2ygq_A          293 NKCQCQEGWHGRHCNK  308 (324)
T ss_dssp             ----------------
T ss_pred             CEeECCCCCcCCCCCC
Confidence            6999999999986543

>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}

Probab=99.60  E-value=8.8e-16  Score=133.41  Aligned_cols=154  Identities=29%  Similarity=0.778  Sum_probs=68.9

Q ss_pred             CCCCCCCeeeeCCCCeEeeCCCCCccCCCCCCCCcccccCCCCCCCCCCceeeCCCCeeeeCCCCCCCCCCCccceeecc
Q psy2857          25 NPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVD  104 (332)
Q Consensus        25 ~~C~~~g~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~c~~~~~~C~~~~~C~~~~~~~~C~C~~g~~~~~~~~~~c~~~~  104 (332)
                      .+|.++|.|.+   .+.|.|.+||+|..++    .+.|.   .+|.+++.|++   .+.|.|.+||.|..+...      
T Consensus       153 ~~C~~~G~C~~---~~~C~C~~G~~G~~C~----~~~C~---~~C~~~G~C~~---~~~C~C~~G~~G~~C~~~------  213 (324)
T 2ygq_A          153 GGCRNGGFCNE---RRICECPDGFHGPHCE----KALCT---PRCMNGGLCVT---PGFCICPPGFYGVNCDKA------  213 (324)
T ss_dssp             SCCCSSCEECT---TSCEECCTTEESSSSC----EESSS---SCCCTTCEECS---SCCEECCTTCBTTTTCBC------
T ss_pred             CCCCCCCEECC---CCeEECCCCCcCCCCC----CCCCC---CCCCCCCEEcC---CCEEeCCCCccCCCcccC------
Confidence            57999999986   4689999999997664    24553   47999999976   358999999999855432      


Q ss_pred             CCCCCCCCccccCCCcccC-ceecCCCCccCCCCeeecCCCCCCCCCCCCCCceecCCCceEeeCCCCCccCCCCccccc
Q psy2857         105 VTSECSSNFECVNNAECVD-GLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKD  183 (332)
Q Consensus       105 ~~~~c~~~~~C~~~~~c~~-~~c~C~~g~~~~g~~c~~~~~C~~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~~c~~  183 (332)
                         .|.  ..|.+++.|+. +.|.|.+||.  |..|. +++|.  .+|.++++|+.   .+.|.|++||.|..+.     
T Consensus       214 ---~C~--~~C~~~G~C~~~~~C~C~~G~~--G~~C~-~~~C~--~~C~~~g~C~~---~~~C~C~~G~~G~~C~-----  275 (324)
T 2ygq_A          214 ---NCS--TTCFNGGTCFYPGKCICPPGLE--GEQCE-ISKCP--QPCRNGGKCIG---KSKCKCSKGYQGDLCS-----  275 (324)
T ss_dssp             ---CCS--SCCCSSCCBSCSSCBCCCTTCC--TTTTC-------------------------------------------
T ss_pred             ---cCC--CCCCCCCeeCCCCeeeCCCCcc--CCCCC-cCcCC--CcCCCCCEECC---CCEEECCCCCcCCCCc-----
Confidence               232  26777777764 6899999998  77774 45664  67888899974   4799999999875322     


Q ss_pred             cCcccceeeccccCcccccccCCcccccceecccccceecccccEEecccCccccccccCccCCCCCCCCCeeeecCCce
Q psy2857         184 VRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATCIDTQGSY  263 (332)
Q Consensus       184 ~~c~~~~~c~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~C~~~~C~~~~~C~~~~~~~  263 (332)
                                                                                +++|. .+|.++++|++   .+
T Consensus       276 ----------------------------------------------------------~~~C~-~~C~~~g~C~~---~~  293 (324)
T 2ygq_A          276 ----------------------------------------------------------KPVCE-PGCGAHGTCHE---PN  293 (324)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----------------------------------------------------------CCCCC-CCCCCCCEECC---CC
Confidence                                                                      12233 45777888986   46


Q ss_pred             eeecCCCcccCCCC
Q psy2857         264 SCVCKEHYTGDPYQ  277 (332)
Q Consensus       264 ~C~C~~G~~g~~~~  277 (332)
                      +|.|++||+|..++
T Consensus       294 ~C~C~~G~~G~~C~  307 (324)
T 2ygq_A          294 KCQCQEGWHGRHCN  307 (324)
T ss_dssp             --------------
T ss_pred             EeECCCCCcCCCCC
Confidence            99999999998765

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=99.59  E-value=1.8e-15  Score=105.24  Aligned_cols=78  Identities=37%  Similarity=0.916  Sum_probs=66.4

Q ss_pred             ccCccCCCC--CCCCCeeeecCCceeeecCCCcccCC--CCcccccccccCCCCCCCCCCeeecCCCceeeeCCCCCCCC
Q psy2857         241 DINECQSNP--CGVNATCIDTQGSYSCVCKEHYTGDP--YQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGK  316 (332)
Q Consensus       241 ~~~~C~~~~--C~~~~~C~~~~~~~~C~C~~G~~g~~--~~~C~~~d~C~~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~  316 (332)
                      ++|+|...+  |. +++|+++.++|+|.|++||++..  ...|+|||+|...+..|. +++|+|+.++|+|.|++||++.
T Consensus         2 dideC~~~~~~C~-~g~C~n~~g~y~C~C~~Gy~~~~~~g~~C~dideC~~~~~~C~-~~~C~n~~g~y~C~C~~G~~~~   79 (86)
T 1lmj_A            2 DIDECRISPDLCG-RGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQLS   79 (86)
T ss_dssp             CCCTTTTCSSTTT-TSCEEEETTEEEECCCSSEEECTTTSSSEEECCHHHHCSSTTT-TSEEEEETTEEEEESCTTSCCC
T ss_pred             ccccccCCCCCCC-CCEEECCCCCEEeeCCCCcCccCCCCCccCCcccccCCCCcCC-CCEeEcCCCCEEEECcCCcccC
Confidence            678998765  85 45999999999999999999652  356899999988666686 5799999999999999999998


Q ss_pred             CCCC
Q psy2857         317 PDAK  320 (332)
Q Consensus       317 ~~~~  320 (332)
                      ...+
T Consensus        80 ~~~~   83 (86)
T 1lmj_A           80 PNIS   83 (86)
T ss_dssp             SSSC
T ss_pred             CCCC
Confidence            7765

>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A*

Probab=99.59  E-value=1.1e-18  Score=144.39  Aligned_cols=189  Identities=7%  Similarity=-0.048  Sum_probs=122.7

Q ss_pred             CCCCCCeeeeCCCCeEeeCCCCCccCCCC---------------------------CCCCcccccCCCCCCCCCCceeeC
Q psy2857          26 PCGVNATCIDTQGSYSCVCKEHYTGDPYQ---------------------------ACSDIDECKALDKPCGLRAICENT   78 (332)
Q Consensus        26 ~C~~~g~C~~~~g~~~C~C~~G~~g~~~~---------------------------~C~~~~~c~~~~~~C~~~~~C~~~   78 (332)
                      +|.++|+|++..++|.|.|++||+|..++                           .|...++|..  .+|.++++|++.
T Consensus        39 ~c~ngG~C~~g~~~y~C~Cp~Gf~G~~Ce~ni~ec~~~~~c~s~pC~nggtc~~G~~c~~~~eC~s--~pC~ngG~C~~~  116 (267)
T 4fbr_A           39 KSDDGGKTLKGTMTYNGEGPIGFRGTLSSANNYTVENQWGGTSAPWQPGGVWVLGARDKQNIVAVS--IKSNDGGKTLTG  116 (267)
T ss_dssp             ECSSTTSEEEEEEEETTSCCEEEEEEECSTTEEEEEEESSSTTSCEEEEEEEECCCCSSCCEEEEE--EECSSTTSEEEE
T ss_pred             CcCCCCeecCCCCCeEEeCCCCcccccccccccccccccCcCCCcccCCCeeeccCccccccccCC--CCCCCCCEEecC
Confidence            68889999999999999999999986553                           2333344543  578899999999


Q ss_pred             CCCeeeeCCCCCCCCCCCccc--eeeccCCCCCCCCccccCCCcccCceecCCCCccCCCCeeecCCCCCCCCCCCCCCc
Q psy2857          79 VPGFNCLCPKGYSGKPDAKVA--CEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQ  156 (332)
Q Consensus        79 ~~~~~C~C~~g~~~~~~~~~~--c~~~~~~~~c~~~~~C~~~~~c~~~~c~C~~g~~~~g~~c~~~~~C~~~~~C~~~~~  156 (332)
                      ..+|+|.|+.||+|..+....  |+..    .+....+|.+.++++.            |..|.....+. +.+|.++++
T Consensus       117 ~~sy~C~C~~Gf~G~~Ce~~~d~C~n~----~~c~s~pC~ngg~c~~------------G~~c~~~i~c~-~~~c~ngg~  179 (267)
T 4fbr_A          117 TTTYNGEGPIGFKSEVTDGDTYSVENQ----WGGSAAPWHSGGVWVL------------GTRGKQNVINV-DAKSNDGGK  179 (267)
T ss_dssp             EEEETTSCCEEEEEEECCCCEEEEEEE----CSSTTSCCEEEEEEEC------------CSSTTSCEEEE-EEECSSTTS
T ss_pred             CccEEeeCCCCccccCCCCCccccccc----CCcCCccccCCcceec------------ccccccccccC-CCCCCCCCE
Confidence            999999999999998543211  1111    1222234544443321            34443222333 467899999


Q ss_pred             eecCCCceEeeCCCCCccCCCCc---cc------cccCcccceeeccccCcccccccCCcccccceecccccceeccccc
Q psy2857         157 CTNTPGSFRCDCVEGYVGAPPRI---KC------KDVRWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKL  227 (332)
Q Consensus       157 C~~~~~~~~C~C~~G~~g~~~~~---~c------~~~~c~~~~~c~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~~~g  227 (332)
                      |++..++|+|.|++||+|..++.   .+      ...+|.+++                  .+.+.|..          +
T Consensus       180 C~dg~~~y~C~Cp~Gf~G~~c~~~i~ec~~~~~c~~~~c~~gG------------------~~~~~C~~----------g  231 (267)
T 4fbr_A          180 TLSGTMTYNGEGPIGFRGTLTSPDTYTVENQWGGSTAPWNPGG------------------FWMIGARN----------G  231 (267)
T ss_dssp             EEEEEEEETTSCCEEEEEEEEETTEEEEEEECSCTTSCCEEEE------------------EEECCCCT----------T
T ss_pred             eeCCCCCeEEeCCCCccccccccccceeccCCCccCCcccCCC------------------eEEEecCC----------C
Confidence            99999999999999999864321   11      111111111                  11111221          2


Q ss_pred             EEecccCccccccccCccCCCCCCCCCeeeecCCceeeecCCCcccC
Q psy2857         228 FVIEDAKRNLNRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGD  274 (332)
Q Consensus       228 ~~~~~~~~~~~~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~  274 (332)
                      +..            +.| +.+|.++++|++...+|.|+|++||+|.
T Consensus       232 ~n~------------~~c-~~~c~ngGtC~dg~~sy~CeCp~GF~G~  265 (267)
T 4fbr_A          232 QNV------------VAL-NVASSDGGKTLAGTMIYNGEGPIGFRAR  265 (267)
T ss_dssp             CCE------------EEE-EEECSSTTSEEEEEEEETTSCCEEEEEE
T ss_pred             Ccc------------ccC-CcCCCCCCEeeCCCcceeecCCCCcccc
Confidence            211            122 2478899999999999999999999874

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=99.57  E-value=4.7e-15  Score=101.95  Aligned_cols=76  Identities=39%  Similarity=0.976  Sum_probs=65.6

Q ss_pred             ccccCccCC-CCCCCCCeeeecCCceeeecCCCcccCCCCcccccccccCCCCCCCCCCeeecCCCceeeeCCCCCCCCC
Q psy2857         239 RVDINECQS-NPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKP  317 (332)
Q Consensus       239 ~~~~~~C~~-~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~C~~~d~C~~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~  317 (332)
                      +.++|+|.. .+|. +++|+++.++|+|.|++||+++. ..|++||+|.. .++|.+ ++|+++.++|+|.|++||+|..
T Consensus         2 C~dideC~~~~~C~-~g~C~n~~g~y~C~C~~Gy~~~g-~~C~dideC~~-~~~C~~-~~C~n~~g~y~C~C~~G~~g~~   77 (82)
T 1emn_A            2 AVDMDECKEPDVCK-HGQCINTDGSYRCECPFGYILAG-NECVDTDECSV-GNPCGN-GTCKNVIGGFECTCEEGFEPGP   77 (82)
T ss_dssp             CCCCCSSSSTTSCS-SSEECCCSSCCCEECCTTEEEET-TEEEECCGGGT-CCTTSS-SCEEECSSSEEECCSSSSCCCS
T ss_pred             CCccccCCCCCCcC-CCEEEecCCCEEEECCCCeECCC-CccCCcccccC-CCCCCC-CEeECCCCCEEeECCCCeEeCC
Confidence            568899986 7896 48999999999999999998532 36899999985 468975 6999999999999999999987


Q ss_pred             C
Q psy2857         318 D  318 (332)
Q Consensus       318 ~  318 (332)
                      .
T Consensus        78 ~   78 (82)
T 1emn_A           78 M   78 (82)
T ss_dssp             S
T ss_pred             C
Confidence            6

>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A

Probab=99.55  E-value=1.6e-15  Score=119.61  Aligned_cols=148  Identities=24%  Similarity=0.497  Sum_probs=105.7

Q ss_pred             eEEEEEecCCceecccCCcCCCC-CCCCCCeeeeCCCCeEeeCCCCCccCCCCCCCCcccccCCCCCCC-CCCceeeCCC
Q psy2857           3 FVVLVRILLGVRAIVDINECQSN-PCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCG-LRAICENTVP   80 (332)
Q Consensus         3 ~~~~c~c~~g~~~~~~~~~C~~~-~C~~~g~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~c~~~~~~C~-~~~~C~~~~~   80 (332)
                      ....|.|.+||+|+.....|... +|..+++|..   ...|+|.+||+|..++    .++|.   ..|. .++.|++   
T Consensus        15 ~~~~c~C~~g~~G~~C~~~C~~~~~c~~~g~C~~---~g~C~C~~G~~G~~C~----~~~C~---~~C~~~~g~C~~---   81 (169)
T 2vj2_A           15 GRSAVTCDDYYYGFGCNKFCRPRDDFFGHYACDQ---NGNKTCMEGWMGPECN----RAICR---QGCSPKHGSCKL---   81 (169)
T ss_dssp             ------CCTTEETTTTCEECCCEEETTEEEEECS---SCCEEECTTEESTTSC----EECCC---TTCCTTTEECSS---
T ss_pred             cCeeeeCCCcCcCCCcccccCCCCCcCCCCEeCC---CCeeECCCCCcCCCCC----CCCCC---CCCCCCCcccCC---
Confidence            45679999999998655567654 4777889964   3479999999997654    23453   3465 5677876   


Q ss_pred             CeeeeCCCCCCCCCCCccceeeccCCCCCCCCccccCCCccc-CceecCCCCccCCCCeee-cCCCCCCCCCCCCCCcee
Q psy2857          81 GFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECV-DGLCYCRPGFDARGSVCV-DVDECQLGDPCGPQAQCT  158 (332)
Q Consensus        81 ~~~C~C~~g~~~~~~~~~~c~~~~~~~~c~~~~~C~~~~~c~-~~~c~C~~g~~~~g~~c~-~~~~C~~~~~C~~~~~C~  158 (332)
                      .|.|.|.+||.|..+..           |.....|.++ .|+ .++|.|.+||.  |..|. ++++|....+|.++++|+
T Consensus        82 ~~~C~C~~G~~G~~C~~-----------C~~~~~C~~g-~C~~~~~C~C~~G~~--G~~C~~~~~~C~~~~~C~~~g~C~  147 (169)
T 2vj2_A           82 PGDCRCQYGWQGLYCDK-----------CIPHPGCVHG-ICNEPWQCLCETNWG--GQLCDKDLNYCGTHQPCLNGGTCS  147 (169)
T ss_dssp             TTCCEECTTEESSSSCE-----------ECCCTTCSSE-ECSSTTCCEECTTEE--TTTTCEESCHHHHTCCCCTTCEEE
T ss_pred             CCeeECCCCCCCCCccc-----------CCCCCCCCCC-CcCCCCEEeCCCCCC--CCcccCCCCCCCCCCCCCCCCEEc
Confidence            46999999999985431           1111124433 554 46899999999  77886 788886447899999999


Q ss_pred             cC-CCceEeeCCCCCccCCC
Q psy2857         159 NT-PGSFRCDCVEGYVGAPP  177 (332)
Q Consensus       159 ~~-~~~~~C~C~~G~~g~~~  177 (332)
                      ++ .++|.|.|++||.|..+
T Consensus       148 ~~~~~~~~C~C~~G~~G~~C  167 (169)
T 2vj2_A          148 NTGPDKYQCSCPEGYSGPNC  167 (169)
T ss_dssp             ECSTTCEEEECCTTCCSTTS
T ss_pred             CCCCCCcEeECCCCCcCcCc
Confidence            96 78999999999998754

>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}

Probab=99.53  E-value=6.8e-16  Score=119.10  Aligned_cols=133  Identities=31%  Similarity=0.720  Sum_probs=86.6

Q ss_pred             ccCCcCCCCCCCCCCeeeeCCCCeEeeCCCCCccCCC-CCCCCcccccCCCCCCCCCCceeeCCCCeeeeCCCCCCCCCC
Q psy2857          17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPY-QACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPD   95 (332)
Q Consensus        17 ~~~~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~g~~~-~~C~~~~~c~~~~~~C~~~~~C~~~~~~~~C~C~~g~~~~~~   95 (332)
                      .|||+|.+.||. +++|+++.++|.|.|++||+|+.. ..|.+.                   .   ...|..+|.+.  
T Consensus         2 ~dideC~~~pC~-ng~C~n~~g~y~C~C~~G~~g~~~~~~C~~~-------------------~---~~~C~~~~~g~--   56 (147)
T 2w86_A            2 ADIDECESSPCI-NGVCKNSPGSFICECSSESTLDPTKTICIET-------------------I---KGTCWQTVIDG--   56 (147)
T ss_dssp             CCCCGGGGCCSB-TSEEEEETTEEEEECCTTEEECTTSSBEEEC-------------------C---CEEEEEEEETT--
T ss_pred             CcCccCcCCCCC-CCEeECCCCCEEeECCCCcccCCCCCeecCC-------------------C---CCcccCCCCCC--
Confidence            589999999997 589999999999999999998754 223221                   1   01222222222  


Q ss_pred             Cccceee-ccCCCCCCCCcccc------CCCcc--cCceecCCCCccC-CCCeeecCCCCC-CCCCCCCCCceecCCCce
Q psy2857          96 AKVACEQ-VDVTSECSSNFECV------NNAEC--VDGLCYCRPGFDA-RGSVCVDVDECQ-LGDPCGPQAQCTNTPGSF  164 (332)
Q Consensus        96 ~~~~c~~-~~~~~~c~~~~~C~------~~~~c--~~~~c~C~~g~~~-~g~~c~~~~~C~-~~~~C~~~~~C~~~~~~~  164 (332)
                         .|+. ++   .|.....|.      ....|  -.+.|.|++||.+ .+..|.++++|. .+.+|.+ ++|+++.++|
T Consensus        57 ---~C~~~~~---~c~~~~~C~~~~g~~~g~~C~~c~~~C~C~~Gy~~~~g~~C~dideC~~~~~~C~~-g~C~n~~g~y  129 (147)
T 2w86_A           57 ---RCEININ---GATLKSQCCSSLGAAWGSPCTLCQVDPICGKGYSRIKGTQCEDIDECEVFPGVCKN-GLCVNTRGSF  129 (147)
T ss_dssp             ---EEEEEEE---EEECHHHHHTTTCSEETTTTEECCCCTTTCTTEEEEETTEEEECCHHHHSTTCSSS-SEEEEETTEE
T ss_pred             ---ccccCCC---ccccCCccccCcCcccCCCcccCCCcccCCCccccCCCCccCccccccCCCCCCCC-CEEECCCCCE
Confidence               1211 00   000000000      01111  1256789999964 488999999997 3466885 5999999999


Q ss_pred             EeeCCCCCccCCCCccc
Q psy2857         165 RCDCVEGYVGAPPRIKC  181 (332)
Q Consensus       165 ~C~C~~G~~g~~~~~~c  181 (332)
                      .|.|++||.++...+.|
T Consensus       130 ~C~C~~Gy~g~~~~~~C  146 (147)
T 2w86_A          130 KCQCPSGMTLDATGRIC  146 (147)
T ss_dssp             EEECCTTCCBCTTSSCB
T ss_pred             EeeCCCCCccCCCCCee
Confidence            99999999998766555

>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A

Probab=99.52  E-value=2.2e-15  Score=111.37  Aligned_cols=108  Identities=33%  Similarity=0.741  Sum_probs=79.4

Q ss_pred             ccCCcCCCCCCCCCCeeeeC-CCCeEeeCCCCCccCCCCCCCCcccccC--CCCCCCCCCceeeCCCCeeeeCCCCCCCC
Q psy2857          17 VDINECQSNPCGVNATCIDT-QGSYSCVCKEHYTGDPYQACSDIDECKA--LDKPCGLRAICENTVPGFNCLCPKGYSGK   93 (332)
Q Consensus        17 ~~~~~C~~~~C~~~g~C~~~-~g~~~C~C~~G~~g~~~~~C~~~~~c~~--~~~~C~~~~~C~~~~~~~~C~C~~g~~~~   93 (332)
                      .|||+|...||.  ++|+++ .++|.|.|++||+|...    ++++|..  ...+|.  +.|++ .++|.|.|++||.+.
T Consensus         2 ~dideC~~~pC~--~~C~~~~~g~y~C~C~~Gy~g~~~----~~~~C~~~C~~~~C~--~~C~~-~~~y~C~C~~Gy~~~   72 (118)
T 1dx5_I            2 EPVDPCFRANCE--YQCQPLDQTSYLCVCAEGFAPIPH----EPHRCQMFCNQTACP--ADCDP-NTQASCECPEGYILD   72 (118)
T ss_dssp             CCCCGGGGCCCS--SEEEECSSSCEEEECCTTEEEETT----EEEEEEECCCSSEEE--CEECT-TSTTCEECCTTEEEE
T ss_pred             CccccCCCCCCC--CCCCCCCCCCEEeECCCCccccCC----CCCccccccCCCCCC--CcccC-CCCeEeECCCCccCC
Confidence            478999999997  399999 89999999999998743    3555542  112332  55665 366677777666542


Q ss_pred             CCCccceeeccCCCCCCCCccccCCCcccCceecCCCCccCCCCeeecCCCCCCCCCCCCCCceecCCCceEeeCCCCCc
Q psy2857          94 PDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYV  173 (332)
Q Consensus        94 ~~~~~~c~~~~~~~~c~~~~~C~~~~~c~~~~c~C~~g~~~~g~~c~~~~~C~~~~~C~~~~~C~~~~~~~~C~C~~G~~  173 (332)
                      .                                         +..|.++++|...++|  .++|+++.++|.|.|++||.
T Consensus        73 ~-----------------------------------------g~~C~dideC~~~~~C--~~~C~n~~g~y~C~C~~G~~  109 (118)
T 1dx5_I           73 D-----------------------------------------GFICTDIDECENGGFC--SGVCHNLPGTFECICGPDSA  109 (118)
T ss_dssp             T-----------------------------------------TTEEEECCHHHHCSSC--SSEEEECSSSEEEEECSSSS
T ss_pred             C-----------------------------------------CCccccccccCCCCCC--cCeEEeCCCCEEEECCCCCc
Confidence            1                                         4566777888644778  68999999999999999999


Q ss_pred             cCC
Q psy2857         174 GAP  176 (332)
Q Consensus       174 g~~  176 (332)
                      +..
T Consensus       110 g~~  112 (118)
T 1dx5_I          110 LAG  112 (118)
T ss_dssp             CEE
T ss_pred             cCC
Confidence            854

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=99.50  E-value=1.4e-14  Score=110.99  Aligned_cols=86  Identities=29%  Similarity=0.674  Sum_probs=68.3

Q ss_pred             ccccccCccCCCCCCCCCeeeecCCceeeecCCCcccCCCCcccccccccCCCCCCCCCCee-ecCCCceeeeCCCCCCC
Q psy2857         237 LNRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAIC-ENTVPGFNCLCPKGYSG  315 (332)
Q Consensus       237 ~~~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~C~~~d~C~~~~~~C~~~~~C-~~~~g~~~C~C~~g~~g  315 (332)
                      ..+.++|+|.++||.++++|++..++|+|.|++||+|.   .|+++|+|...+++|.+  +| +++.++|.|.|++||++
T Consensus        43 ~~c~dideC~~~pC~n~g~C~~~~~~y~C~C~~G~~G~---~C~~~deC~~~~~~C~~--~C~~n~~g~y~C~C~~Gy~l  117 (146)
T 1x7a_L           43 KQYVDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGK---NCELDATCNIKNGRCKQ--FCKTGADSKVLCSCTTGYRL  117 (146)
T ss_dssp             -------CCSSCSSCTTCEEEECSSCEEEECCSSEEST---TTCEECCTTSGGGSCSS--BCCCCSSSCCCCBCCTTEEE
T ss_pred             ccCCCcCcCCCCCCCCCCEeECCCCCEEEecCCCCcCC---cCCCCccccCCCCCCcC--CCCCCCCCCEEeEcCCCcEe
Confidence            35789999999999999999999999999999999987   46778999876667864  89 99999999999999997


Q ss_pred             CCCCCcccccccc
Q psy2857         316 KPDAKVACEQEKA  328 (332)
Q Consensus       316 ~~~~~~~c~~~~~  328 (332)
                      ..+++ +|..+.+
T Consensus       118 ~~dG~-~C~~~~~  129 (146)
T 1x7a_L          118 APDQK-SCKPAVP  129 (146)
T ss_dssp             CTTSS-SEEECSS
T ss_pred             CCCCC-cCCCCCC
Confidence            76654 6776543

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=99.48  E-value=3.3e-14  Score=104.41  Aligned_cols=85  Identities=31%  Similarity=0.590  Sum_probs=65.6

Q ss_pred             ccccCccCCCC--------CCCCCeeeecCCceeeecCCCcccCCCCcccccccccCCCCCCCCCCeeecCCCceeeeCC
Q psy2857         239 RVDINECQSNP--------CGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCP  310 (332)
Q Consensus       239 ~~~~~~C~~~~--------C~~~~~C~~~~~~~~C~C~~G~~g~~~~~C~~~d~C~~~~~~C~~~~~C~~~~g~~~C~C~  310 (332)
                      .+|+|+|...|        |.++++|++..++|+|.|++||+|..++.-.++++|......|.  .+|+++.++|+|.|+
T Consensus         3 ~~d~d~C~~~p~~~~C~~~C~~~g~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~C~~~~~~C~--~~C~n~~g~y~C~C~   80 (114)
T 1aut_L            3 HVDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCT--HYCLEEVGWRRCSCA   80 (114)
T ss_dssp             -----CCCCCSSCCSSSSTTTTSEEECCCSSCCCEEECTTEESTTSCEECCSSSSSSGGGGCS--SEEEECSSSEEEECC
T ss_pred             ceecccccCCCccccccccCCCcCCCCCCCCCcEeeCCCCCcCCCcCcCCcCCcCcCCCCCCC--CEeECCCCCEEeECC
Confidence            35778898888        99999999999999999999999987653223457876555675  399999999999999


Q ss_pred             CCCCCCCCCCcccccc
Q psy2857         311 KGYSGKPDAKVACEQE  326 (332)
Q Consensus       311 ~g~~g~~~~~~~c~~~  326 (332)
                      +||+|..+++ .|+++
T Consensus        81 ~G~~~~~~g~-~C~~~   95 (114)
T 1aut_L           81 PGYKLGDDLL-QCHPA   95 (114)
T ss_dssp             TTEEECTTSS-CEEEC
T ss_pred             CCeeECCCCC-ccCcC
Confidence            9999887765 67654

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=99.48  E-value=1.1e-13  Score=130.80  Aligned_cols=141  Identities=26%  Similarity=0.594  Sum_probs=105.0

Q ss_pred             cCCCCCCCCCCeeeeCCCCeE---eeCCCCCccCCCCCCC------CcccccCCC--CCCCCCCceeeCCCCeeeeCC--
Q psy2857          21 ECQSNPCGVNATCIDTQGSYS---CVCKEHYTGDPYQACS------DIDECKALD--KPCGLRAICENTVPGFNCLCP--   87 (332)
Q Consensus        21 ~C~~~~C~~~g~C~~~~g~~~---C~C~~G~~g~~~~~C~------~~~~c~~~~--~~C~~~~~C~~~~~~~~C~C~--   87 (332)
                      +|...||.+.+.|.+..|.|.   |.|.+||+|..++.-.      ..++|...+  .+|.+++.|++    +.|.|.  
T Consensus       436 ~C~~~pc~n~~~C~~g~G~~~~G~C~C~~Gy~G~~Ce~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~----g~C~C~~~  511 (690)
T 3fcs_B          436 ACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLC----GQCVCHSS  511 (690)
T ss_dssp             GGGTTCCTTCTTTTTTSEEEETTEEEECTTCCSSSSCCSCC------CCCCSSSSSSCGGGGSEEECS----SSEEECCC
T ss_pred             CCcCCCCCCCCcccCCCCeEeCCceEeCCCccCCceeeccCccCCccCCcCCCCCCCCCCCCCCEEEC----CeeEeecC
Confidence            677888988899998888888   9999999998774211      124565322  45888999984    489999  


Q ss_pred             --CCCCCCCCCccceeeccCCCCCCC--CccccCCCcccCceecCCCCccCCCCeee---cCCCCCC--CCCCCCCCcee
Q psy2857          88 --KGYSGKPDAKVACEQVDVTSECSS--NFECVNNAECVDGLCYCRPGFDARGSVCV---DVDECQL--GDPCGPQAQCT  158 (332)
Q Consensus        88 --~g~~~~~~~~~~c~~~~~~~~c~~--~~~C~~~~~c~~~~c~C~~g~~~~g~~c~---~~~~C~~--~~~C~~~~~C~  158 (332)
                        +||.|..+     +...  ..|..  ...|.+++.|..+.|.|.+||.  |..|.   ++++|..  ..+|.++++|+
T Consensus       512 ~~~Gy~G~~C-----e~~~--~~C~~~~~~~C~~~G~C~~g~C~C~~Gy~--G~~CeC~~~~~~C~~~~g~~C~~~G~C~  582 (690)
T 3fcs_B          512 DFGKITGKYC-----ECDD--FSCVRYKGEMCSGHGQCSCGDCLCDSDWT--GYYCNCTTRTDTCMSSNGLLCSGRGKCE  582 (690)
T ss_dssp             SSCCCBSTTS-----CBCS--SCCCBSSSSBGGGSEEEETTEEEECTTEE--SSSSCEECCCTTTBCTTSSBTSSSCEEE
T ss_pred             CCCCeeCCCc-----Cccc--CcCcCCCCCCCCCCCEecCCeeECcCCCc--CCCCccCCCCCcccCCCCCCCCCCCEEe
Confidence              99999854     3111  13443  2478889999999999999999  67775   4667762  26799999997


Q ss_pred             cCCCceEeeC-CCCCccCCCC
Q psy2857         159 NTPGSFRCDC-VEGYVGAPPR  178 (332)
Q Consensus       159 ~~~~~~~C~C-~~G~~g~~~~  178 (332)
                      +.    .|.| ++||.|..++
T Consensus       583 ~g----~C~C~~~Gy~G~~Ce  599 (690)
T 3fcs_B          583 CG----SCVCIQPGSYGDTCE  599 (690)
T ss_dssp             TT----EEECCSTTCBSTTSC
T ss_pred             CC----EEECCCCCccCCCcC
Confidence            63    8999 9999987543

>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*

Probab=99.44  E-value=3.1e-13  Score=127.64  Aligned_cols=169  Identities=27%  Similarity=0.572  Sum_probs=115.3

Q ss_pred             CCCCCCCCceeeCCCCee---eeCCCCCCCCCCCcccee-eccCCCCCCCC---ccccCCCcccCceecCC----CCccC
Q psy2857          66 DKPCGLRAICENTVPGFN---CLCPKGYSGKPDAKVACE-QVDVTSECSSN---FECVNNAECVDGLCYCR----PGFDA  134 (332)
Q Consensus        66 ~~~C~~~~~C~~~~~~~~---C~C~~g~~~~~~~~~~c~-~~~~~~~c~~~---~~C~~~~~c~~~~c~C~----~g~~~  134 (332)
                      ..+|.+.+.|.+..|.|.   |.|.+||.|..+....-. .......|...   ..|.+++.|..+.|.|.    +||. 
T Consensus       439 ~~pc~n~~~C~~g~G~~~~G~C~C~~Gy~G~~Ce~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~g~C~C~~~~~~Gy~-  517 (690)
T 3fcs_B          439 AQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLCGQCVCHSSDFGKIT-  517 (690)
T ss_dssp             TTCCTTCTTTTTTSEEEETTEEEECTTCCSSSSCCSCC------CCCCSSSSSSCGGGGSEEECSSSEEECCCSSCCCB-
T ss_pred             CCCCCCCCcccCCCCeEeCCceEeCCCccCCceeeccCccCCccCCcCCCCCCCCCCCCCCEEECCeeEeecCCCCCee-
Confidence            367888889987778787   999999999855321000 00000134432   35888888888888888    8887 


Q ss_pred             CCCeee-cCCCCCC--CCCCCCCCceecCCCceEeeCCCCCccCCCCccccccCcccceeeccccCcccccccCCccccc
Q psy2857         135 RGSVCV-DVDECQL--GDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYETDYLHSVASDISDIL  211 (332)
Q Consensus       135 ~g~~c~-~~~~C~~--~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~~c~~~~c~~~~~c~~~~~~~~~~~~~~~~~~~  211 (332)
                       |..|. ++.+|..  ..+|.++++|.+    +.|.|++||.|..+.  |                              
T Consensus       518 -G~~Ce~~~~~C~~~~~~~C~~~G~C~~----g~C~C~~Gy~G~~Ce--C------------------------------  560 (690)
T 3fcs_B          518 -GKYCECDDFSCVRYKGEMCSGHGQCSC----GDCLCDSDWTGYYCN--C------------------------------  560 (690)
T ss_dssp             -STTSCBCSSCCCBSSSSBGGGSEEEET----TEEEECTTEESSSSC--E------------------------------
T ss_pred             -CCCcCcccCcCcCCCCCCCCCCCEecC----CeeECcCCCcCCCCc--c------------------------------
Confidence             77774 4556752  146777788876    588888888876432  0                              


Q ss_pred             ceecccccceecccccEEecccCccccccccCccCC---CCCCCCCeeeecCCceeeec-CCCcccCCCCcccccccccC
Q psy2857         212 TIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQS---NPCGVNATCIDTQGSYSCVC-KEHYTGDPYQACSDIDECKA  287 (332)
Q Consensus       212 c~c~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~C~~---~~C~~~~~C~~~~~~~~C~C-~~G~~g~~~~~C~~~d~C~~  287 (332)
                                                 -.++++|..   .+|.++++|++.    +|.| ++||+|..|+.|   ..|  
T Consensus       561 ---------------------------~~~~~~C~~~~g~~C~~~G~C~~g----~C~C~~~Gy~G~~Ce~C---~~C--  604 (690)
T 3fcs_B          561 ---------------------------TTRTDTCMSSNGLLCSGRGKCECG----SCVCIQPGSYGDTCEKC---PTC--  604 (690)
T ss_dssp             ---------------------------ECCCTTTBCTTSSBTSSSCEEETT----EEECCSTTCBSTTSCBC---TTS--
T ss_pred             ---------------------------CCCCCcccCCCCCCCCCCCEEeCC----EEECCCCCccCCCcCcC---CCC--
Confidence                                       012234543   578889999763    8999 999999977643   335  


Q ss_pred             CCCCCCCCCeeecCCCceeeeCCCCCCCCC
Q psy2857         288 LDKPCGLRAICENTVPGFNCLCPKGYSGKP  317 (332)
Q Consensus       288 ~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~  317 (332)
                       +.+|.+++.|++        |..+|+|..
T Consensus       605 -~~~C~~~g~Cv~--------C~~g~tG~~  625 (690)
T 3fcs_B          605 -PDACTFKKECVE--------CKKFDRGAL  625 (690)
T ss_dssp             -CCTTTSCCGGGT--------TTTTCCSSS
T ss_pred             -CCCCCCCCCccc--------CCCCCccCC
Confidence             368988898876        889999984

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=99.44  E-value=7.5e-14  Score=97.12  Aligned_cols=80  Identities=38%  Similarity=0.912  Sum_probs=65.3

Q ss_pred             ccCccCCCC--CCCCCeeeecCCceeeecCCCcccCCC-CcccccccccCCCCCCCCCCeeecCCCceeeeCC--CCCCC
Q psy2857         241 DINECQSNP--CGVNATCIDTQGSYSCVCKEHYTGDPY-QACSDIDECKALDKPCGLRAICENTVPGFNCLCP--KGYSG  315 (332)
Q Consensus       241 ~~~~C~~~~--C~~~~~C~~~~~~~~C~C~~G~~g~~~-~~C~~~d~C~~~~~~C~~~~~C~~~~g~~~C~C~--~g~~g  315 (332)
                      ++++|...+  | ++++|++..++|+|.|++||++... ..|++||+|..  ++|.  ++|+++.++|+|.|+  .||..
T Consensus         2 dideC~~~~~~C-~~~~C~n~~g~y~C~C~~G~~~~~~g~~C~dideC~~--~~C~--~~C~n~~g~y~C~C~g~~G~~~   76 (87)
T 1z6c_A            2 DVDECSLKPSIC-GTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSE--NMCA--QLCVNYPGGYTCYCDGKKGFKL   76 (87)
T ss_dssp             CSCSSSSSSSSB-TTSSCCCBTTBCCCSSSTTCEEETTTTEEECCCHHHH--SCCS--SEECCCSSSCCEECCSSSCCBC
T ss_pred             ccccccCCCCCC-CCCEeECCCCCEEEECCCCceECCCCCcCCCcCeeCC--CCCC--CEEEccCCCEEEECCCCcCCcc
Confidence            678998877  8 7899999999999999999996542 46899999975  6896  799999999999995  66666


Q ss_pred             CCCCCcccccc
Q psy2857         316 KPDAKVACEQE  326 (332)
Q Consensus       316 ~~~~~~~c~~~  326 (332)
                      ....+ .|.+|
T Consensus        77 ~~~~~-~C~di   86 (87)
T 1z6c_A           77 AQDQK-SCEVV   86 (87)
T ss_dssp             CTTSS-SCBCC
T ss_pred             cCCCC-cceEC
Confidence            55443 57655

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=99.39  E-value=6.1e-14  Score=101.28  Aligned_cols=75  Identities=33%  Similarity=0.837  Sum_probs=31.7

Q ss_pred             ccCccCCC--CCCCCCeeeecCCceeeecCCCcccCCCCcccccccccCCCCCCCCCCeeecCCCceeeeCCCCCCCCCC
Q psy2857         241 DINECQSN--PCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPD  318 (332)
Q Consensus       241 ~~~~C~~~--~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~C~~~d~C~~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~  318 (332)
                      ++++|...  .|.  +.|++..++|+|.|++||+|.....|+|||+|.. .++|.  ++|+|+.++|.|.|++||++...
T Consensus        28 d~neC~~~~~~C~--~~C~n~~g~y~C~C~~Gy~g~~g~~C~dideC~~-~~~C~--~~C~n~~gsy~C~C~~Gy~~~~d  102 (107)
T 2w2n_E           28 GTNECLDNNGGCS--YVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQD-PDTCS--QLCVNLEGGYKCQCEEGFQLDPH  102 (107)
T ss_dssp             SCCGGGTGGGGCS--SEEECCSBSCEEECCTTCEEETTTEEEC-------------------------------------
T ss_pred             cCccCcCCCCCCC--CEeEeCCCCeEEECCCCccccCCCccccccccCC-CCCcC--CeeecCCCCEEEECCCCceECCC
Confidence            66788753  453  6899999999999999999965567999999974 46886  79999999999999999999876


Q ss_pred             CC
Q psy2857         319 AK  320 (332)
Q Consensus       319 ~~  320 (332)
                      .+
T Consensus       103 ~~  104 (107)
T 2w2n_E          103 TK  104 (107)
T ss_dssp             --
T ss_pred             CC
Confidence            55

>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1

Probab=99.39  E-value=2.5e-13  Score=94.29  Aligned_cols=78  Identities=37%  Similarity=0.916  Sum_probs=65.5

Q ss_pred             ccCCcCCCCC--CCCCCeeeeCCCCeEeeCCCCCccCC--CCCCCCcccccCCCCCCCCCCceeeCCCCeeeeCCCCCCC
Q psy2857          17 VDINECQSNP--CGVNATCIDTQGSYSCVCKEHYTGDP--YQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSG   92 (332)
Q Consensus        17 ~~~~~C~~~~--C~~~g~C~~~~g~~~C~C~~G~~g~~--~~~C~~~~~c~~~~~~C~~~~~C~~~~~~~~C~C~~g~~~   92 (332)
                      .|||+|...+  |. +++|+++.++|.|.|++||++..  ...|+++++|...+..|. +++|+++.++|.|.|++||.+
T Consensus         1 ~dideC~~~~~~C~-~g~C~n~~g~y~C~C~~Gy~~~~~~g~~C~dideC~~~~~~C~-~~~C~n~~g~y~C~C~~G~~~   78 (86)
T 1lmj_A            1 TDIDECRISPDLCG-RGQCVNTPGDFECKCDEGYESGFMMMKNCMDIDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQL   78 (86)
T ss_dssp             CCCCTTTTCSSTTT-TSCEEEETTEEEECCCSSEEECTTTSSSEEECCHHHHCSSTTT-TSEEEEETTEEEEESCTTSCC
T ss_pred             CccccccCCCCCCC-CCEEECCCCCEEeeCCCCcCccCCCCCccCCcccccCCCCcCC-CCEeEcCCCCEEEECcCCccc
Confidence            4789999877  95 57999999999999999999642  367889999987555675 589999999999999999998


Q ss_pred             CCCC
Q psy2857          93 KPDA   96 (332)
Q Consensus        93 ~~~~   96 (332)
                      ....
T Consensus        79 ~~~~   82 (86)
T 1lmj_A           79 SPNI   82 (86)
T ss_dssp             CSSS
T ss_pred             CCCC
Confidence            7543

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=99.38  E-value=8.5e-14  Score=110.91  Aligned_cols=85  Identities=26%  Similarity=0.636  Sum_probs=33.1

Q ss_pred             ccccccCccCCCCCCCCCeeeecCCceeeecCCCcccCCCCccccc-ccccCCCCCCCCCCeeecCCCceeeeCCCCCCC
Q psy2857         237 LNRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDI-DECKALDKPCGLRAICENTVPGFNCLCPKGYSG  315 (332)
Q Consensus       237 ~~~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~C~~~-d~C~~~~~~C~~~~~C~~~~g~~~C~C~~g~~g  315 (332)
                      ..+.++++|...||.++++|++..++|+|.|++||+|..|.  .++ |+|...+++|.+  .|+++.++|.|.|++||++
T Consensus        37 ~~c~dideC~~~pC~ngg~C~n~~g~y~C~C~~Gf~G~~Ce--~~i~deC~~~~~~C~~--~C~n~~gsy~C~C~~Gy~l  112 (195)
T 1nfu_B           37 NKYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE--LFTRKLCSLDNGDCDQ--FCHEEQNSVVCSCARGYTL  112 (195)
T ss_dssp             ----------------------------------------------CCGGGTGGGGCSS--EEEEETTEEEEECCTTEEE
T ss_pred             ccCCCCcccCCCCCCCCCEeECCCCCeeEeCCCCceecccc--ccccccccCCCCCCCC--EeECCCCCeEEECCCCcee
Confidence            35778999999999999999999999999999999987543  236 899876677874  9999999999999999996


Q ss_pred             CCCCCcccccc
Q psy2857         316 KPDAKVACEQE  326 (332)
Q Consensus       316 ~~~~~~~c~~~  326 (332)
                      ...++ .|..+
T Consensus       113 ~~dG~-~C~~~  122 (195)
T 1nfu_B          113 ADNGK-ACIPT  122 (195)
T ss_dssp             CTTSS-CEEES
T ss_pred             CCCCC-ccccC
Confidence            65544 56654

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=99.37  E-value=1e-13  Score=104.71  Aligned_cols=84  Identities=27%  Similarity=0.703  Sum_probs=33.7

Q ss_pred             cccccCccCCCCCCCCCeeeecCCceeeecCCCcccCCCCcccc-c-ccccCCCCCCCCCCeeecCCCceeeeCCCCCCC
Q psy2857         238 NRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSD-I-DECKALDKPCGLRAICENTVPGFNCLCPKGYSG  315 (332)
Q Consensus       238 ~~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~C~~-~-d~C~~~~~~C~~~~~C~~~~g~~~C~C~~g~~g  315 (332)
                      .+.++++|.++||.++++|++..++|+|.|++||+|..   |++ + |+|...+++|.+  +|+++.++|.|.|++||++
T Consensus        38 ~c~d~d~C~~~pC~n~g~C~~~~~~y~C~C~~G~~G~~---C~~~i~d~C~~~~~~C~~--~C~~~~g~y~C~C~~Gy~l  112 (134)
T 2vh0_B           38 KYKDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKN---CELFTRKLCSLDNGDCDQ--FCHEEQNSVVCSCARGYTL  112 (134)
T ss_dssp             ----------------------------------------------CCGGGTGGGGCSS--EEEEETTEEEEECCTTEEE
T ss_pred             cCCCcCcCCCCCCCCcCCcccCCCCEEeeCCCCccCCc---cccCCCCccccCCCCCCC--EeECCCCCEEEECCCCcEE
Confidence            46789999999999999999999999999999999874   555 6 889876667864  9999999999999999997


Q ss_pred             CCCCCccccccc
Q psy2857         316 KPDAKVACEQEK  327 (332)
Q Consensus       316 ~~~~~~~c~~~~  327 (332)
                      ...++ .|..+.
T Consensus       113 ~~~g~-~C~~~~  123 (134)
T 2vh0_B          113 ADNGK-ACIPTG  123 (134)
T ss_dssp             CTTSS-CEEESS
T ss_pred             CCCCC-ccCcCC
Confidence            66554 676543

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=99.36  E-value=7.2e-13  Score=101.14  Aligned_cols=86  Identities=24%  Similarity=0.506  Sum_probs=68.3

Q ss_pred             cccccCccCCCCCCCCCeeeecCCceeeecCCCcccCCCCcccccccccCCCCCCCCCC---eeecCCC-ceeeeCCCCC
Q psy2857         238 NRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRA---ICENTVP-GFNCLCPKGY  313 (332)
Q Consensus       238 ~~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~C~~~d~C~~~~~~C~~~~---~C~~~~g-~~~C~C~~g~  313 (332)
                      .+.++++|.++||.++++|++..++|+|.|++||+|..+.  .++++|..  .++.+++   +|+++.+ +|+|.|++||
T Consensus        43 ~c~did~C~~~pC~n~g~C~~~~g~y~C~C~~G~~G~~C~--~~~~~c~~--c~~~~~~C~~~C~~~~g~~y~C~C~~Gy  118 (142)
T 2c4f_L           43 SYSDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNCE--THKDDQLI--CVNENGGCEQYCSDHTGTKRSCRCHEGY  118 (142)
T ss_dssp             HHTTCCGGGGCCCCTTCEEEEETTEEEEECCTTEESTTSC--EEGGGCCS--TTTGGGGCSSEEECCTTSCCEEECCTTE
T ss_pred             cCCccCcCcCCCcCCCCEEeCCCCCEEeeCCCCccCCccc--cCcccccc--ccCCCCCccCEeECCCCCCEEEECCCCc
Confidence            4568899999999999999999999999999999998654  23666532  2333333   9999999 9999999999


Q ss_pred             CCCCCCCcccccccc
Q psy2857         314 SGKPDAKVACEQEKA  328 (332)
Q Consensus       314 ~g~~~~~~~c~~~~~  328 (332)
                      ++..+++ +|..+++
T Consensus       119 ~l~~dG~-~C~~~~e  132 (142)
T 2c4f_L          119 SLLADGV-SCTPTVE  132 (142)
T ss_dssp             EECTTSS-CEEESSS
T ss_pred             eECCCCC-CCCCCCc
Confidence            9776655 6877655

>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A

Probab=99.32  E-value=2.8e-12  Score=88.02  Aligned_cols=78  Identities=44%  Similarity=0.999  Sum_probs=63.8

Q ss_pred             CCCCcccccCCCCCCCCCCceeeCCCCeeeeCCCCCCCCCCCccceeeccCCCCCCCCccccCCCcccCceecCCCCccC
Q psy2857          55 ACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDA  134 (332)
Q Consensus        55 ~C~~~~~c~~~~~~C~~~~~C~~~~~~~~C~C~~g~~~~~~~~~~c~~~~~~~~c~~~~~C~~~~~c~~~~c~C~~g~~~  134 (332)
                      +|+++++|.. +.+|. ++.|+++.++|.|.|++||.+.                                         
T Consensus         1 sC~dideC~~-~~~C~-~g~C~n~~g~y~C~C~~Gy~~~-----------------------------------------   37 (82)
T 1emn_A            1 SAVDMDECKE-PDVCK-HGQCINTDGSYRCECPFGYILA-----------------------------------------   37 (82)
T ss_dssp             CCCCCCSSSS-TTSCS-SSEECCCSSCCCEECCTTEEEE-----------------------------------------
T ss_pred             CCCccccCCC-CCCcC-CCEEEecCCCEEEECCCCeECC-----------------------------------------
Confidence            3678999975 57897 4899999999999999998742                                         


Q ss_pred             CCCeeecCCCCCCCCCCCCCCceecCCCceEeeCCCCCccCCC
Q psy2857         135 RGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPP  177 (332)
Q Consensus       135 ~g~~c~~~~~C~~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~  177 (332)
                       +..|.++++|...++|.+ ++|+++.++|.|.|++||.++..
T Consensus        38 -g~~C~dideC~~~~~C~~-~~C~n~~g~y~C~C~~G~~g~~~   78 (82)
T 1emn_A           38 -GNECVDTDECSVGNPCGN-GTCKNVIGGFECTCEEGFEPGPM   78 (82)
T ss_dssp             -TTEEEECCGGGTCCTTSS-SCEEECSSSEEECCSSSSCCCSS
T ss_pred             -CCccCCcccccCCCCCCC-CEeECCCCCEEeECCCCeEeCCC
Confidence             455667788865578875 69999999999999999998764

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=99.31  E-value=2.2e-12  Score=94.59  Aligned_cols=84  Identities=31%  Similarity=0.591  Sum_probs=63.3

Q ss_pred             ccCCcCCCCC--------CCCCCeeeeCCCCeEeeCCCCCccCCCCCCCCcccccCCCCCCCCCCceeeCCCCeeeeCCC
Q psy2857          17 VDINECQSNP--------CGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPK   88 (332)
Q Consensus        17 ~~~~~C~~~~--------C~~~g~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~c~~~~~~C~~~~~C~~~~~~~~C~C~~   88 (332)
                      .|+++|...|        |.++++|+++.++|.|.|++||+|..++.-.++++|...+..|..  +|+++.++|.|.|.+
T Consensus         4 ~d~d~C~~~p~~~~C~~~C~~~g~C~~~~~~y~C~C~~G~~G~~C~~~~~~~~C~~~~~~C~~--~C~n~~g~y~C~C~~   81 (114)
T 1aut_L            4 VDGDQCLVLPLEHPCASLCCGHGTCIDGIGSFSCDCRSGWEGRFCQREVSFLNCSLDNGGCTH--YCLEEVGWRRCSCAP   81 (114)
T ss_dssp             ----CCCCCSSCCSSSSTTTTSEEECCCSSCCCEEECTTEESTTSCEECCSSSSSSGGGGCSS--EEEECSSSEEEECCT
T ss_pred             eecccccCCCccccccccCCCcCCCCCCCCCcEeeCCCCCcCCCcCcCCcCCcCcCCCCCCCC--EeECCCCCEEeECCC
Confidence            4778999999        999999999999999999999999865432234567643445643  899999999999999


Q ss_pred             CCCCCCCCccceeec
Q psy2857          89 GYSGKPDAKVACEQV  103 (332)
Q Consensus        89 g~~~~~~~~~~c~~~  103 (332)
                      ||.+....+ .|+.+
T Consensus        82 G~~~~~~g~-~C~~~   95 (114)
T 1aut_L           82 GYKLGDDLL-QCHPA   95 (114)
T ss_dssp             TEEECTTSS-CEEEC
T ss_pred             CeeECCCCC-ccCcC
Confidence            999876554 56553

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=99.24  E-value=8.7e-12  Score=87.19  Aligned_cols=78  Identities=19%  Similarity=0.476  Sum_probs=62.2

Q ss_pred             ccceecccccceecccccEEecccCccccccccCccCCCCCCCCCeeeecCCceeeecCCCcccCCCCccc--ccccccC
Q psy2857         210 ILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACS--DIDECKA  287 (332)
Q Consensus       210 ~~c~c~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~C~--~~d~C~~  287 (332)
                      |.|+|.+          ||++..+       ++++|...||      ++..++|+|.|++||+     .|+  ++|+|..
T Consensus         2 y~C~C~~----------g~~g~~c-------~~~~c~~~pC------~n~~~~y~C~C~~G~~-----~C~~~~~~~C~~   53 (91)
T 1tpg_A            2 YQVICRD----------EKTQMIY-------QQHQSWLRPV------LRSNRVEYCWCNSGRA-----QCHSVPVKSCSE   53 (91)
T ss_dssp             CCCCCBC----------SSSCCBC-------CSSCEEEEEC------SSSSCEEEEECSSSCC-----BCCEECEEECSS
T ss_pred             eeeECCC----------CCcCCeE-------CCCcccCCcc------ccCCCCcEeECCCCCc-----ccccCcCCcccC
Confidence            5677777          8776533       4677766654      4567899999999996     464  7999986


Q ss_pred             CCCCCCCCCeeecCC--CceeeeCCCCCCCCC
Q psy2857         288 LDKPCGLRAICENTV--PGFNCLCPKGYSGKP  317 (332)
Q Consensus       288 ~~~~C~~~~~C~~~~--g~~~C~C~~g~~g~~  317 (332)
                        .+|.++++|++..  ++|+|.|++||+|..
T Consensus        54 --~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~   83 (91)
T 1tpg_A           54 --PRCFNGGTCQQALYFSDFVCQCPEGFAGKS   83 (91)
T ss_dssp             --CCSCTTCEEEEESSSSCEEEECCTTCBSSS
T ss_pred             --CCCCCCCEeecCCCCCCeEeECCCCCcCCc
Confidence              6899999999987  999999999999873

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=99.23  E-value=7.6e-12  Score=95.71  Aligned_cols=82  Identities=30%  Similarity=0.714  Sum_probs=64.6

Q ss_pred             ccCCcCCCCCCCCCCeeeeCCCCeEeeCCCCCccCCCCCCCCcccccCCCCCCCCCCce-eeCCCCeeeeCCCCCCCCCC
Q psy2857          17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAIC-ENTVPGFNCLCPKGYSGKPD   95 (332)
Q Consensus        17 ~~~~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~c~~~~~~C~~~~~C-~~~~~~~~C~C~~g~~~~~~   95 (332)
                      .|+|+|.+.||.++++|+++.++|.|.|++||+|.   .|.++++|...+.+|..  .| +++.++|.|.|.+||.+...
T Consensus        46 ~dideC~~~pC~n~g~C~~~~~~y~C~C~~G~~G~---~C~~~deC~~~~~~C~~--~C~~n~~g~y~C~C~~Gy~l~~d  120 (146)
T 1x7a_L           46 VDGDQCEPNPCLNGGLCKDDINSYECWCQVGFEGK---NCELDATCNIKNGRCKQ--FCKTGADSKVLCSCTTGYRLAPD  120 (146)
T ss_dssp             ----CCSSCSSCTTCEEEECSSCEEEECCSSEEST---TTCEECCTTSGGGSCSS--BCCCCSSSCCCCBCCTTEEECTT
T ss_pred             CCcCcCCCCCCCCCCEeECCCCCEEEecCCCCcCC---cCCCCccccCCCCCCcC--CCCCCCCCCEEeEcCCCcEeCCC
Confidence            78999999999999999999999999999999985   46677889764557764  89 99999999999999996544


Q ss_pred             Cccceeecc
Q psy2857          96 AKVACEQVD  104 (332)
Q Consensus        96 ~~~~c~~~~  104 (332)
                      +. .|+.++
T Consensus       121 G~-~C~~~~  128 (146)
T 1x7a_L          121 QK-SCKPAV  128 (146)
T ss_dssp             SS-SEEECS
T ss_pred             CC-cCCCCC
Confidence            33 565543

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=99.22  E-value=5.4e-12  Score=87.65  Aligned_cols=71  Identities=37%  Similarity=0.926  Sum_probs=59.4

Q ss_pred             ccCCcCCCCC--CCCCCeeeeCCCCeEeeCCCCCccCCC-CCCCCcccccCCCCCCCCCCceeeCCCCeeeeCC--CCCC
Q psy2857          17 VDINECQSNP--CGVNATCIDTQGSYSCVCKEHYTGDPY-QACSDIDECKALDKPCGLRAICENTVPGFNCLCP--KGYS   91 (332)
Q Consensus        17 ~~~~~C~~~~--C~~~g~C~~~~g~~~C~C~~G~~g~~~-~~C~~~~~c~~~~~~C~~~~~C~~~~~~~~C~C~--~g~~   91 (332)
                      .|+++|...+  | .+++|+++.++|.|.|++||++... ..|+++++|..  .+|.  ++|+++.++|.|.|+  .||.
T Consensus         1 ~dideC~~~~~~C-~~~~C~n~~g~y~C~C~~G~~~~~~g~~C~dideC~~--~~C~--~~C~n~~g~y~C~C~g~~G~~   75 (87)
T 1z6c_A            1 KDVDECSLKPSIC-GTAVCKNIPGDFECECPEGYRYNLKSKSCEDIDECSE--NMCA--QLCVNYPGGYTCYCDGKKGFK   75 (87)
T ss_dssp             CCSCSSSSSSSSB-TTSSCCCBTTBCCCSSSTTCEEETTTTEEECCCHHHH--SCCS--SEECCCSSSCCEECCSSSCCB
T ss_pred             CccccccCCCCCC-CCCEeECCCCCEEEECCCCceECCCCCcCCCcCeeCC--CCCC--CEEEccCCCEEEECCCCcCCc
Confidence            4789999988  8 6899999999999999999996432 56889999964  6785  799999999999995  5554


Q ss_pred             C
Q psy2857          92 G   92 (332)
Q Consensus        92 ~   92 (332)
                      .
T Consensus        76 ~   76 (87)
T 1z6c_A           76 L   76 (87)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=99.20  E-value=1.9e-11  Score=106.68  Aligned_cols=83  Identities=28%  Similarity=0.646  Sum_probs=69.5

Q ss_pred             ccCccCCCCCCCCCeeeecCCceeeecCCCcccCCCCcccccccccCC-CCCCCCCCeeecCCCceeeeCCCCCCCCCCC
Q psy2857         241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKAL-DKPCGLRAICENTVPGFNCLCPKGYSGKPDA  319 (332)
Q Consensus       241 ~~~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~C~~~d~C~~~-~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~  319 (332)
                      ++++|.++||.++++|++..++|+|.|++||+|..|+  .|+|+|... .++|.+  .|+++.++|.|.|++||++....
T Consensus         4 d~~~C~~~pC~~~g~C~~~~~~~~C~C~~g~~g~~C~--~~~~eC~~~~~~~C~~--~C~~~~g~~~C~C~~g~~~~~~~   79 (317)
T 3h5c_B            4 GGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCE--LAKNECHPERTDGCQH--FCLPGQESYTCSCAQGYRLGEDH   79 (317)
T ss_dssp             --CCTTSCCCTTTCCCCCCSSSCCCCCSSSCCSSSSC--CCSSSCCTTCTTSCSS--EEECCSSSCEEECCTTEECCTTS
T ss_pred             cCCcCCCCCCCCCCEeECCCCCeEEECCCCCcCCccc--cCcccCCCCCCCCCcC--ccccCCCeeEEeccccccccccc
Confidence            6789999999999999999999999999999998554  499999863 368975  99999999999999999998765


Q ss_pred             Ccccccccc
Q psy2857         320 KVACEQEKA  328 (332)
Q Consensus       320 ~~~c~~~~~  328 (332)
                      . .|.++.+
T Consensus        80 ~-~C~~~~~   87 (317)
T 3h5c_B           80 K-QCVPHDQ   87 (317)
T ss_dssp             S-CCEECSS
T ss_pred             c-ccccccc
Confidence            4 6776544

>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A

Probab=99.12  E-value=1.1e-11  Score=89.41  Aligned_cols=82  Identities=29%  Similarity=0.676  Sum_probs=36.9

Q ss_pred             ecCCceec-ccCCcCCCC--CCCCCCeeeeCCCCeEeeCCCCCccCCCCCCCCcccccCCCCCCCCCCceeeCCCCeeee
Q psy2857           9 ILLGVRAI-VDINECQSN--PCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCL   85 (332)
Q Consensus         9 c~~g~~~~-~~~~~C~~~--~C~~~g~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~c~~~~~~C~~~~~C~~~~~~~~C~   85 (332)
                      ...+|.++ -++++|...  .|.  +.|+++.++|.|.|++||+|.+...|+++++|.. +.+|.  +.|+++.++|.|.
T Consensus        18 ~~~~~~~~~Cd~neC~~~~~~C~--~~C~n~~g~y~C~C~~Gy~g~~g~~C~dideC~~-~~~C~--~~C~n~~gsy~C~   92 (107)
T 2w2n_E           18 TENLYFQGAMGTNECLDNNGGCS--YVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQD-PDTCS--QLCVNLEGGYKCQ   92 (107)
T ss_dssp             --CCCCSCCBSCCGGGTGGGGCS--SEEECCSBSCEEECCTTCEEETTTEEEC---------------------------
T ss_pred             cCCCcCCCCCcCccCcCCCCCCC--CEeEeCCCCeEEECCCCccccCCCccccccccCC-CCCcC--CeeecCCCCEEEE
Confidence            34677776 568888764  353  6999999999999999999865567889999973 46785  7999999999999


Q ss_pred             CCCCCCCCCC
Q psy2857          86 CPKGYSGKPD   95 (332)
Q Consensus        86 C~~g~~~~~~   95 (332)
                      |.+||.+...
T Consensus        93 C~~Gy~~~~d  102 (107)
T 2w2n_E           93 CEEGFQLDPH  102 (107)
T ss_dssp             ----------
T ss_pred             CCCCceECCC
Confidence            9999998644

>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A

Probab=99.12  E-value=4.5e-11  Score=83.52  Aligned_cols=76  Identities=20%  Similarity=0.500  Sum_probs=62.7

Q ss_pred             EEEecCCceec-ccCCcCCCCCCCCCCeeeeCCCCeEeeCCCCCccCCCCCCC--CcccccCCCCCCCCCCceeeCC--C
Q psy2857           6 LVRILLGVRAI-VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACS--DIDECKALDKPCGLRAICENTV--P   80 (332)
Q Consensus         6 ~c~c~~g~~~~-~~~~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~g~~~~~C~--~~~~c~~~~~~C~~~~~C~~~~--~   80 (332)
                      .|.|.+||+|. .++++|...|      |++..++|.|+|++||+     .|.  ++++|..  .+|.++++|++..  +
T Consensus         3 ~C~C~~g~~g~~c~~~~c~~~p------C~n~~~~y~C~C~~G~~-----~C~~~~~~~C~~--~pC~ngg~C~~~~~~~   69 (91)
T 1tpg_A            3 QVICRDEKTQMIYQQHQSWLRP------VLRSNRVEYCWCNSGRA-----QCHSVPVKSCSE--PRCFNGGTCQQALYFS   69 (91)
T ss_dssp             CCCCBCSSSCCBCCSSCEEEEE------CSSSSCEEEEECSSSCC-----BCCEECEEECSS--CCSCTTCEEEEESSSS
T ss_pred             eeECCCCCcCCeECCCcccCCc------cccCCCCcEeECCCCCc-----ccccCcCCcccC--CCCCCCCEeecCCCCC
Confidence            47899999998 5567775554      45667899999999997     564  6899964  7899999999987  8


Q ss_pred             CeeeeCCCCCCCCC
Q psy2857          81 GFNCLCPKGYSGKP   94 (332)
Q Consensus        81 ~~~C~C~~g~~~~~   94 (332)
                      +|.|.|++||.|..
T Consensus        70 ~~~C~C~~G~~G~~   83 (91)
T 1tpg_A           70 DFVCQCPEGFAGKS   83 (91)
T ss_dssp             CEEEECCTTCBSSS
T ss_pred             CeEeECCCCCcCCc
Confidence            99999999999973

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=99.11  E-value=1.6e-11  Score=97.74  Aligned_cols=81  Identities=28%  Similarity=0.738  Sum_probs=31.1

Q ss_pred             ccCCcCCCCCCCCCCeeeeCCCCeEeeCCCCCccCCCCCCCC-c-ccccCCCCCCCCCCceeeCCCCeeeeCCCCCCCCC
Q psy2857          17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSD-I-DECKALDKPCGLRAICENTVPGFNCLCPKGYSGKP   94 (332)
Q Consensus        17 ~~~~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~g~~~~~C~~-~-~~c~~~~~~C~~~~~C~~~~~~~~C~C~~g~~~~~   94 (332)
                      .|+++|.+.||.++|+|++..++|.|.|++||+|..   |.+ + ++|...+.+|..  .|+++.++|.|.|.+||.+..
T Consensus        40 ~dideC~~~pC~ngg~C~n~~g~y~C~C~~Gf~G~~---Ce~~i~deC~~~~~~C~~--~C~n~~gsy~C~C~~Gy~l~~  114 (195)
T 1nfu_B           40 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKN---CELFTRKLCSLDNGDCDQ--FCHEEQNSVVCSCARGYTLAD  114 (195)
T ss_dssp             --------------------------------------------CCGGGTGGGGCSS--EEEEETTEEEEECCTTEEECT
T ss_pred             CCCcccCCCCCCCCCEeECCCCCeeEeCCCCceecc---ccccccccccCCCCCCCC--EeECCCCCeEEECCCCceeCC
Confidence            789999999999999999999999999999999965   444 5 788765567864  999999999999999999544


Q ss_pred             CCccceeec
Q psy2857          95 DAKVACEQV  103 (332)
Q Consensus        95 ~~~~~c~~~  103 (332)
                      .+. .|+.+
T Consensus       115 dG~-~C~~~  122 (195)
T 1nfu_B          115 NGK-ACIPT  122 (195)
T ss_dssp             TSS-CEEES
T ss_pred             CCC-ccccC
Confidence            333 56554

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.10  E-value=8.6e-11  Score=105.79  Aligned_cols=80  Identities=34%  Similarity=0.823  Sum_probs=67.7

Q ss_pred             CccCCCCCCCCCeeeecCCceeeecCCCcccCCCCcccccccccCCCCCCCCCCeeecCCCceeeeCCCCCCCCCCCCcc
Q psy2857         243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVA  322 (332)
Q Consensus       243 ~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~C~~~d~C~~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~~~  322 (332)
                      +||...++..++.|++++++|.|.|++||++.....|+|+|||.. +.+|.  ..|+|+.++|.|.|++||.+....+ .
T Consensus         1 ~eC~~~~~~c~~~C~~~~~~y~C~C~~G~~~~~~~~C~dideC~~-~~~C~--~~C~n~~g~~~C~C~~g~~~~~~~~-~   76 (400)
T 3p5b_L            1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQD-PDTCS--QLCVNLEGGYKCQCEEGFQLDPHTK-A   76 (400)
T ss_dssp             CCTTTTGGGCSSEEEECSSSEEEECCTTEEECSSSCEEECCCCST-TSSCS--SCCBCCSSSCBCCCCTTCCCCTTTS-S
T ss_pred             CcccCCCCCCCCEeECCCCCeEEECCCCCCcCCCCcccCchhhhc-cCCCC--CccCCCccceeeecccccccccccc-c
Confidence            467777777788999999999999999999755567999999984 56886  3899999999999999999987765 6


Q ss_pred             cccc
Q psy2857         323 CEQE  326 (332)
Q Consensus       323 c~~~  326 (332)
                      |..+
T Consensus        77 C~~~   80 (400)
T 3p5b_L           77 CKAV   80 (400)
T ss_dssp             CCCS
T ss_pred             eeec
Confidence            7644

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=99.09  E-value=2.7e-10  Score=102.36  Aligned_cols=129  Identities=23%  Similarity=0.608  Sum_probs=91.3

Q ss_pred             EEEEEecCCceecccCCcCCCCCCCCCCeeeeCCCCeEeeCCCCCccCCCCC-CCCc-------ccccCCCCCCCCCCce
Q psy2857           4 VVLVRILLGVRAIVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQA-CSDI-------DECKALDKPCGLRAIC   75 (332)
Q Consensus         4 ~~~c~c~~g~~~~~~~~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~g~~~~~-C~~~-------~~c~~~~~~C~~~~~C   75 (332)
                      +..|.|.+||.|+.....|  .+|.++|+|.+  +.+.|.|++||+|..++. |.+-       ++|. ....|..++.|
T Consensus       184 ~~~c~C~~g~~G~~C~~~C--~~C~~~G~C~~--~~g~C~C~~G~~G~~Ce~~C~~g~~g~~C~~~C~-~~~~C~~~g~C  258 (423)
T 2gy5_A          184 LIVRRCEAQKWGPECNHLC--TACMNNGVCHE--DTGECICPPGFMGRTCEKACELHTFGRTCKERCS-GQEGCKSYVFC  258 (423)
T ss_dssp             EEECSSCTTEESTTSCEEC--CCCCTTCEECT--TTCCEECCTTEESTTSCEECCTTEESTTSCEECC-STTTTTTCCEE
T ss_pred             ccCCcCCCCCCCCCCCCCC--CCCCCCCEEEC--CCCcEeCCCCccCCCcccccCCCCCCCCcCccCC-CCCCCCCCCEE
Confidence            5678999999997544445  37999999987  457899999999988763 4321       2443 23567777777


Q ss_pred             eeCCCCeeeeCCCCCCCCCCCccceeeccCCCCCCCCccccCCCcccCceecCCCCccCCCCeeecCCCCCCCCCCCCCC
Q psy2857          76 ENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNAECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQA  155 (332)
Q Consensus        76 ~~~~~~~~C~C~~g~~~~~~~~~~c~~~~~~~~c~~~~~C~~~~~c~~~~c~C~~g~~~~g~~c~~~~~C~~~~~C~~~~  155 (332)
                      .  .+.|.|.|.+||.|.     .|+.                        .|.+||.  |..|..  .|    +|.+++
T Consensus       259 ~--~~~~~C~C~~G~~G~-----~C~~------------------------~C~~G~~--G~~C~~--~C----~C~ngg  299 (423)
T 2gy5_A          259 L--PDPYGCSCATGWKGL-----QCNE------------------------ACHPGFY--GPDCKL--RC----SCNNGE  299 (423)
T ss_dssp             E--TTTTEEECCBTCBSG-----GGCB------------------------CCCTTBC--SBTTCC--BC----CCTTCC
T ss_pred             C--CCCCeEEeCCCcccc-----cccC------------------------ccCCCCc--CCcccc--cc----cCCCCC
Confidence            4  456799999999986     3321                        3667776  444432  22    577888


Q ss_pred             ceecCCCceEeeCCCCCccCCCCc
Q psy2857         156 QCTNTPGSFRCDCVEGYVGAPPRI  179 (332)
Q Consensus       156 ~C~~~~~~~~C~C~~G~~g~~~~~  179 (332)
                      +|.+..   .|.|++||.|..++.
T Consensus       300 ~C~~~~---~C~C~~G~~G~~Ce~  320 (423)
T 2gy5_A          300 MCDRFQ---GCLCSPGWQGLQCER  320 (423)
T ss_dssp             EEETTT---EEECCTTCBSTTSCB
T ss_pred             EecCCC---ceECCCCCcCCCCcc
Confidence            998764   499999999987654

>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*

Probab=99.09  E-value=2.3e-10  Score=102.84  Aligned_cols=136  Identities=25%  Similarity=0.643  Sum_probs=86.1

Q ss_pred             eEeeCCCCCccCCCCCCCCcccccCCCCCCCCCCceeeCCCCeeeeCCCCCCCCCCCccceeeccCCCCCCCCccccCCC
Q psy2857          40 YSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSSNFECVNNA  119 (332)
Q Consensus        40 ~~C~C~~G~~g~~~~~C~~~~~c~~~~~~C~~~~~C~~~~~~~~C~C~~g~~~~~~~~~~c~~~~~~~~c~~~~~C~~~~  119 (332)
                      +.|.|.+||.|+.++.     .|    .+|.+++.|++  +.+.|.|.+||.|..     |+.                 
T Consensus       185 ~~c~C~~g~~G~~C~~-----~C----~~C~~~G~C~~--~~g~C~C~~G~~G~~-----Ce~-----------------  231 (423)
T 2gy5_A          185 IVRRCEAQKWGPECNH-----LC----TACMNNGVCHE--DTGECICPPGFMGRT-----CEK-----------------  231 (423)
T ss_dssp             EECSSCTTEESTTSCE-----EC----CCCCTTCEECT--TTCCEECCTTEESTT-----SCE-----------------
T ss_pred             cCCcCCCCCCCCCCCC-----CC----CCCCCCCEEEC--CCCcEeCCCCccCCC-----ccc-----------------
Confidence            3577888888866531     23    26888888876  345888988888873     321                 


Q ss_pred             cccCceecCCCCccCCCCeeecCCCCCCCCCCCCCCceecCCCceEeeCCCCCccCCCCccccccCcccceeeccccCcc
Q psy2857         120 ECVDGLCYCRPGFDARGSVCVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDVRWEFNVTLLFYETDY  199 (332)
Q Consensus       120 ~c~~~~c~C~~g~~~~g~~c~~~~~C~~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~~c~~~~c~~~~~c~~~~~~~  199 (332)
                             .|.++|.  +..|.+  +|.....|.+++.|.  .+++.|.|++||.|..++..|.                 
T Consensus       232 -------~C~~g~~--g~~C~~--~C~~~~~C~~~g~C~--~~~~~C~C~~G~~G~~C~~~C~-----------------  281 (423)
T 2gy5_A          232 -------ACELHTF--GRTCKE--RCSGQEGCKSYVFCL--PDPYGCSCATGWKGLQCNEACH-----------------  281 (423)
T ss_dssp             -------ECCTTEE--STTSCE--ECCSTTTTTTCCEEE--TTTTEEECCBTCBSGGGCBCCC-----------------
T ss_pred             -------ccCCCCC--CCCcCc--cCCCCCCCCCCCEEC--CCCCeEEeCCCcccccccCccC-----------------
Confidence                   1233343  334432  344345677778885  4678999999999865443221                 


Q ss_pred             cccccCCcccccceecccccceecccccEEecccCccccccccCccCCCCCCCCCeeeecCCceeeecCCCcccCCCCc
Q psy2857         200 LHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQA  278 (332)
Q Consensus       200 ~~~~~~~~~~~~c~c~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~  278 (332)
                                      +          ||.+..|..        .|   +|.+++.|.+..   .|.|++||+|..|+.
T Consensus       282 ----------------~----------G~~G~~C~~--------~C---~C~ngg~C~~~~---~C~C~~G~~G~~Ce~  320 (423)
T 2gy5_A          282 ----------------P----------GFYGPDCKL--------RC---SCNNGEMCDRFQ---GCLCSPGWQGLQCER  320 (423)
T ss_dssp             ----------------T----------TBCSBTTCC--------BC---CCTTCCEEETTT---EEECCTTCBSTTSCB
T ss_pred             ----------------C----------CCcCCcccc--------cc---cCCCCCEecCCC---ceECCCCCcCCCCcc
Confidence                            1          555443321        12   577888888764   399999999987763

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=99.08  E-value=2.5e-11  Score=91.52  Aligned_cols=81  Identities=28%  Similarity=0.738  Sum_probs=30.6

Q ss_pred             ccCCcCCCCCCCCCCeeeeCCCCeEeeCCCCCccCCCCCCCC-c-ccccCCCCCCCCCCceeeCCCCeeeeCCCCCCCCC
Q psy2857          17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSD-I-DECKALDKPCGLRAICENTVPGFNCLCPKGYSGKP   94 (332)
Q Consensus        17 ~~~~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~g~~~~~C~~-~-~~c~~~~~~C~~~~~C~~~~~~~~C~C~~g~~~~~   94 (332)
                      .++++|.+.||.++++|+++.++|.|.|++||+|..   |.+ + ++|...+.+|.+  .|+++.++|.|.|.+||.+..
T Consensus        40 ~d~d~C~~~pC~n~g~C~~~~~~y~C~C~~G~~G~~---C~~~i~d~C~~~~~~C~~--~C~~~~g~y~C~C~~Gy~l~~  114 (134)
T 2vh0_B           40 KDGDQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKN---CELFTRKLCSLDNGDCDQ--FCHEEQNSVVCSCARGYTLAD  114 (134)
T ss_dssp             --------------------------------------------CCGGGTGGGGCSS--EEEEETTEEEEECCTTEEECT
T ss_pred             CCcCcCCCCCCCCcCCcccCCCCEEeeCCCCccCCc---cccCCCCccccCCCCCCC--EeECCCCCEEEECCCCcEECC
Confidence            688999999999999999999999999999999864   444 5 788754456764  999999999999999999554


Q ss_pred             CCccceeec
Q psy2857          95 DAKVACEQV  103 (332)
Q Consensus        95 ~~~~~c~~~  103 (332)
                      .+. .|+.+
T Consensus       115 ~g~-~C~~~  122 (134)
T 2vh0_B          115 NGK-ACIPT  122 (134)
T ss_dssp             TSS-CEEES
T ss_pred             CCC-ccCcC
Confidence            333 56554

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=99.03  E-value=2e-10  Score=87.49  Aligned_cols=82  Identities=26%  Similarity=0.516  Sum_probs=62.8

Q ss_pred             ccCCcCCCCCCCCCCeeeeCCCCeEeeCCCCCccCCCCCCCC-cccccCCCCCCCCCC---ceeeCCC-CeeeeCCCCCC
Q psy2857          17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSD-IDECKALDKPCGLRA---ICENTVP-GFNCLCPKGYS   91 (332)
Q Consensus        17 ~~~~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~g~~~~~C~~-~~~c~~~~~~C~~~~---~C~~~~~-~~~C~C~~g~~   91 (332)
                      .|+++|.+.||.++++|+++.++|.|.|++||+|..+   .+ ++++..  .++.+++   .|+++.+ +|.|.|.+||.
T Consensus        45 ~did~C~~~pC~n~g~C~~~~g~y~C~C~~G~~G~~C---~~~~~~c~~--c~~~~~~C~~~C~~~~g~~y~C~C~~Gy~  119 (142)
T 2c4f_L           45 SDGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC---ETHKDDQLI--CVNENGGCEQYCSDHTGTKRSCRCHEGYS  119 (142)
T ss_dssp             TTCCGGGGCCCCTTCEEEEETTEEEEECCTTEESTTS---CEEGGGCCS--TTTGGGGCSSEEECCTTSCCEEECCTTEE
T ss_pred             CccCcCcCCCcCCCCEEeCCCCCEEeeCCCCccCCcc---ccCcccccc--ccCCCCCccCEeECCCCCCEEEECCCCce
Confidence            6899999999999999999999999999999999654   43 455421  1232233   8999999 99999999999


Q ss_pred             CCCCCccceeecc
Q psy2857          92 GKPDAKVACEQVD  104 (332)
Q Consensus        92 ~~~~~~~~c~~~~  104 (332)
                      +...++ .|+.++
T Consensus       120 l~~dG~-~C~~~~  131 (142)
T 2c4f_L          120 LLADGV-SCTPTV  131 (142)
T ss_dssp             ECTTSS-CEEESS
T ss_pred             ECCCCC-CCCCCC
Confidence            654433 565543

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=99.01  E-value=1.8e-10  Score=108.58  Aligned_cols=134  Identities=24%  Similarity=0.625  Sum_probs=96.1

Q ss_pred             EEEecCCceeccc---CC---------cCCCC----CCCCCCeeeeCCCCeEeeCC------CCCccCCCCCCCCccccc
Q psy2857           6 LVRILLGVRAIVD---IN---------ECQSN----PCGVNATCIDTQGSYSCVCK------EHYTGDPYQACSDIDECK   63 (332)
Q Consensus         6 ~c~c~~g~~~~~~---~~---------~C~~~----~C~~~g~C~~~~g~~~C~C~------~G~~g~~~~~C~~~~~c~   63 (332)
                      .|.|.+||+|...   ++         .|...    +|.++|.|+..    .|.|.      +||+|..++  .+.+.|.
T Consensus       447 ~C~C~~Gy~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~G----~C~C~~~~~~~~G~~G~~Ce--~~~~~C~  520 (687)
T 3k6s_B          447 ICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCG----QCLCHTSDVPGKLIYGQYCE--CDTINCE  520 (687)
T ss_dssp             SEEECSSEESTTSCEESSSCCCSGGGSTTSSSTTSCGGGSSEEEETT----EEEECCCCSTTCCEESTTSC--EESSCSC
T ss_pred             EeEcCCCCcCCcccccCCcCCccccCCCCCCCCCCCcCCCCCEEeCC----EEEcCCCCCCCCCccccccc--ccccccc
Confidence            4899999999932   22         47653    39999999953    79999      999998775  1344554


Q ss_pred             CC-CCCCCC--CCceeeCCCCeeeeCCCCCCCCCCCccceeeccCCCCCCC--CccccCCCcccCceecCCCCccCCCCe
Q psy2857          64 AL-DKPCGL--RAICENTVPGFNCLCPKGYSGKPDAKVACEQVDVTSECSS--NFECVNNAECVDGLCYCRPGFDARGSV  138 (332)
Q Consensus        64 ~~-~~~C~~--~~~C~~~~~~~~C~C~~g~~~~~~~~~~c~~~~~~~~c~~--~~~C~~~~~c~~~~c~C~~g~~~~g~~  138 (332)
                      .. ..+|.+  ++.|...    .|.|.+||.|..+..     ......|..  ...|.+++.|..+.|.|.+||.  |..
T Consensus       521 ~~~~~~C~~~~~G~C~~g----~C~C~~G~~G~~Cec-----~~~~~~C~~~~g~~Cs~~G~C~~g~C~C~~Gy~--G~~  589 (687)
T 3k6s_B          521 RYNGQVCGGPGRGLCFCG----KCRCHPGFEGSACQC-----ERTTEGCLNPRRVECSGRGRCRCNVCECHSGYQ--LPL  589 (687)
T ss_dssp             EETTEETSHHHHEEEETT----EEEECTTCCSTTSCS-----CCSSCTTBCTTCSBTSSSCCBCSSCBCCSTTCC--TTT
T ss_pred             CCCCcCcCCCCCCeEECC----EEEcCCCCcCCCCcc-----CCCCCCCCCCCCCCCCCCCcCCCCEEECCCCCc--CCC
Confidence            21 235887  8999853    899999999985541     100113443  2478889999999999999998  888


Q ss_pred             eecCCCCCCCCCCCCCCcee
Q psy2857         139 CVDVDECQLGDPCGPQAQCT  158 (332)
Q Consensus       139 c~~~~~C~~~~~C~~~~~C~  158 (332)
                      |..-..|.  .+|.+++.|+
T Consensus       590 Ce~c~~C~--~~C~~~g~Cv  607 (687)
T 3k6s_B          590 CQECPGCP--SPCGKYISCA  607 (687)
T ss_dssp             TCCCTTSC--CCCTTTHHHH
T ss_pred             CCCCCCCC--cccCCCCCCC
Confidence            86544563  6788888887

>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*

Probab=98.95  E-value=9.1e-10  Score=103.84  Aligned_cols=144  Identities=21%  Similarity=0.401  Sum_probs=104.8

Q ss_pred             CccccCCCcccCceecCCCCccCCCCeee-cCC---------CCCC---CCCCCCCCceecCCCceEeeCC------CCC
Q psy2857         112 NFECVNNAECVDGLCYCRPGFDARGSVCV-DVD---------ECQL---GDPCGPQAQCTNTPGSFRCDCV------EGY  172 (332)
Q Consensus       112 ~~~C~~~~~c~~~~c~C~~g~~~~g~~c~-~~~---------~C~~---~~~C~~~~~C~~~~~~~~C~C~------~G~  172 (332)
                      ...|.+++.|..+.|.|.+||.  |..|. ..+         .|..   ..+|.+++.|+..    .|.|+      +||
T Consensus       434 s~~Cs~~G~C~~g~C~C~~Gy~--G~~Cec~~~~~~~~~~~~~C~~~~~~~~Cs~~G~C~~G----~C~C~~~~~~~~G~  507 (687)
T 3k6s_B          434 RSLCHGKGFLECGICRCDTGYI--GKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCG----QCLCHTSDVPGKLI  507 (687)
T ss_dssp             SSTGGGSEEESSSSEEECSSEE--STTSCEESSSCCCSGGGSTTSSSTTSCGGGSSEEEETT----EEEECCCCSTTCCE
T ss_pred             CCCCCCCCEEeCCEeEcCCCCc--CCcccccCCcCCccccCCCCCCCCCCCcCCCCCEEeCC----EEEcCCCCCCCCCc
Confidence            3478888888889999999999  67764 222         4642   1358889999842    99999      999


Q ss_pred             ccCCCC---ccccc---cCccc--ceeeccccCcccccccCCcccccceecccccceecccccEEecccCccccccccCc
Q psy2857         173 VGAPPR---IKCKD---VRWEF--NVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVDINE  244 (332)
Q Consensus       173 ~g~~~~---~~c~~---~~c~~--~~~c~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  244 (332)
                      .|..++   ..|..   ..|.+  ++.|.               ...|.|.+          ||++..|..   ..+++.
T Consensus       508 ~G~~Ce~~~~~C~~~~~~~C~~~~~G~C~---------------~g~C~C~~----------G~~G~~Cec---~~~~~~  559 (687)
T 3k6s_B          508 YGQYCECDTINCERYNGQVCGGPGRGLCF---------------CGKCRCHP----------GFEGSACQC---ERTTEG  559 (687)
T ss_dssp             ESTTSCEESSCSCEETTEETSHHHHEEEE---------------TTEEEECT----------TCCSTTSCS---CCSSCT
T ss_pred             cccccccccccccCCCCcCcCCCCCCeEE---------------CCEEEcCC----------CCcCCCCcc---CCCCCC
Confidence            999875   24542   23655  66665               34788988          999987751   123567


Q ss_pred             cCCC---CCCCCCeeeecCCceeeecCCCcccCCCCcccccccccCCCCCCCCCCeee
Q psy2857         245 CQSN---PCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICE  299 (332)
Q Consensus       245 C~~~---~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~C~~~d~C~~~~~~C~~~~~C~  299 (332)
                      |...   +|.+++.|+.    .+|.|++||+|..|+.|   ..|.   .+|.+++.|+
T Consensus       560 C~~~~g~~Cs~~G~C~~----g~C~C~~Gy~G~~Ce~c---~~C~---~~C~~~g~Cv  607 (687)
T 3k6s_B          560 CLNPRRVECSGRGRCRC----NVCECHSGYQLPLCQEC---PGCP---SPCGKYISCA  607 (687)
T ss_dssp             TBCTTCSBTSSSCCBCS----SCBCCSTTCCTTTTCCC---TTSC---CCCTTTHHHH
T ss_pred             CCCCCCCCCCCCCcCCC----CEEECCCCCcCCCCCCC---CCCC---cccCCCCCCC
Confidence            7653   7999999987    38999999999987644   2453   5888888776

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.95  E-value=1.3e-10  Score=104.23  Aligned_cols=82  Identities=28%  Similarity=0.710  Sum_probs=22.3

Q ss_pred             ccCccCCCCCCCCCeeeecCCceeeecCCCcccCCC-CcccccccccCCCCCCCCCCeeecCCCceeeeCCCCCCCCCCC
Q psy2857         241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPY-QACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDA  319 (332)
Q Consensus       241 ~~~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~-~~C~~~d~C~~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~  319 (332)
                      ++++|..+++...+.|.+..++|+|.|++||++... ..|+|+|||. ...+|.+  .|+|+.++|.|.|++||+.....
T Consensus         2 ~~~~C~~~~~~c~~~C~~~~g~~~C~C~~G~~l~~~~~~C~d~~eC~-~~~~C~~--~C~~~~g~~~C~C~~g~~l~~d~   78 (386)
T 3v65_B            2 GEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECA-EEGYCSQ--GCTNSEGAFQCWCEAGYELRPDR   78 (386)
T ss_dssp             ---------------------------------------------------CCTT--EEC-----CCEECCTTEEECTTS
T ss_pred             CcCcccCCCCCCCCCCcCCCCCcEeECCCCceECCCCCccCccceeC-CcCcccC--cCCCCCCCCeEEECCCceEcCCC
Confidence            578898877666679999999999999999995542 4689999997 3468974  59999999999999999977665


Q ss_pred             Ccccccc
Q psy2857         320 KVACEQE  326 (332)
Q Consensus       320 ~~~c~~~  326 (332)
                      + .|..+
T Consensus        79 ~-~C~~~   84 (386)
T 3v65_B           79 R-SCKAL   84 (386)
T ss_dssp             S-CEEEC
T ss_pred             C-eECCc
Confidence            4 67654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.94  E-value=5.4e-09  Score=100.60  Aligned_cols=81  Identities=33%  Similarity=0.818  Sum_probs=64.3

Q ss_pred             ccCccCCCCCCCCCeeeecCCceeeecCCCcccCCCCcccccccccCCCCCCCCCCeeecCCCceeeeCCCCCCCCCCCC
Q psy2857         241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAK  320 (332)
Q Consensus       241 ~~~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~C~~~d~C~~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~  320 (332)
                      ++++|........+.|+++.++|+|.|++||++.....|++||||.. ..+|.  +.|+|+.++|.|.|++||++....+
T Consensus       293 ~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~~~~~~~C~dideC~~-~~~C~--~~C~n~~g~y~C~C~~G~~~~~~~~  369 (699)
T 1n7d_A          293 GTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQD-PDTCS--QLCVNLEGGYKCQCEEGFQLDPHTK  369 (699)
T ss_dssp             CCCCTTSSTTTSCTTCCCCTTCCCCCCCSSSCCCSSSCCCCCCCCSS-SSSCT--TTCCBCSSCBCCCCCSSCBCCSSCC
T ss_pred             ccccccccccCcCCCcccCCCCcEEeCCCCeEcCCCCcccCccccCC-CCccc--cccccCCCCeeeeeecccccCCCCC
Confidence            45677654322246899999999999999999855567999999974 46785  5899999999999999999987665


Q ss_pred             ccccc
Q psy2857         321 VACEQ  325 (332)
Q Consensus       321 ~~c~~  325 (332)
                       +|..
T Consensus       370 -~C~~  373 (699)
T 1n7d_A          370 -ACKA  373 (699)
T ss_dssp             -CCBC
T ss_pred             -cccc
Confidence             5754

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.94  E-value=9.5e-10  Score=106.67  Aligned_cols=80  Identities=34%  Similarity=0.823  Sum_probs=62.6

Q ss_pred             CccCCCCCCCCCeeeecCCceeeecCCCcccCCCCcccccccccCCCCCCCCCCeeecCCCceeeeCCCCCCCCCCCCcc
Q psy2857         243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVA  322 (332)
Q Consensus       243 ~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~C~~~d~C~~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~~~  322 (332)
                      ++|........+.|+++.++|+|.|++||.+.....|+|||||.. +.+|.  +.|+|+.++|.|.|++||.+....+ .
T Consensus       313 ~~C~~~~~~C~~~C~~~~~~y~C~C~~Gy~l~~g~~C~dideC~~-~~~C~--~~C~n~~gsy~C~C~~Gy~l~~~~~-~  388 (791)
T 3m0c_C          313 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQD-PDTCS--QLCVNLEGGYKCQCEEGFQLDPHTK-A  388 (791)
T ss_dssp             CSTTTGGGGCSSEEEECSBSEEEECCTTCEEETTTEEECCCCCSS-SSSCT--TTCCBCSSCBCCCCCSSEECCSSCC-C
T ss_pred             ccccccccCccccccCCCCCcccCCCCCCccCCCCccccCcccCC-CCCCC--CeeecCCCCceeecCCCCEeCCCCc-e
Confidence            455433222235899999999999999998754567999999983 45774  6899999999999999999987655 6


Q ss_pred             cccc
Q psy2857         323 CEQE  326 (332)
Q Consensus       323 c~~~  326 (332)
                      |..+
T Consensus       389 C~~~  392 (791)
T 3m0c_C          389 CKAV  392 (791)
T ss_dssp             CEET
T ss_pred             eeec
Confidence            7654

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=98.88  E-value=2.4e-09  Score=93.28  Aligned_cols=83  Identities=29%  Similarity=0.648  Sum_probs=66.5

Q ss_pred             ccCCcCCCCCCCCCCeeeeCCCCeEeeCCCCCccCCCCCCCCcccccCC-CCCCCCCCceeeCCCCeeeeCCCCCCCCCC
Q psy2857          17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKAL-DKPCGLRAICENTVPGFNCLCPKGYSGKPD   95 (332)
Q Consensus        17 ~~~~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~c~~~-~~~C~~~~~C~~~~~~~~C~C~~g~~~~~~   95 (332)
                      .|+++|.++||.++++|++..++|.|.|++||+|..++  .++++|... ..+|.+  .|+++.++|.|.|.+||.+...
T Consensus         3 ~d~~~C~~~pC~~~g~C~~~~~~~~C~C~~g~~g~~C~--~~~~eC~~~~~~~C~~--~C~~~~g~~~C~C~~g~~~~~~   78 (317)
T 3h5c_B            3 KGGSPCISQPCLHNGSCQDSIWGYTCTCSPGYEGSNCE--LAKNECHPERTDGCQH--FCLPGQESYTCSCAQGYRLGED   78 (317)
T ss_dssp             ---CCTTSCCCTTTCCCCCCSSSCCCCCSSSCCSSSSC--CCSSSCCTTCTTSCSS--EEECCSSSCEEECCTTEECCTT
T ss_pred             ccCCcCCCCCCCCCCEeECCCCCeEEECCCCCcCCccc--cCcccCCCCCCCCCcC--ccccCCCeeEEecccccccccc
Confidence            36889999999999999999999999999999996543  289999752 368975  9999999999999999998754


Q ss_pred             Cccceeecc
Q psy2857          96 AKVACEQVD  104 (332)
Q Consensus        96 ~~~~c~~~~  104 (332)
                      .+ .|...+
T Consensus        79 ~~-~C~~~~   86 (317)
T 3h5c_B           79 HK-QCVPHD   86 (317)
T ss_dssp             SS-CCEECS
T ss_pred             cc-cccccc
Confidence            43 565543

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=98.78  E-value=3.7e-09  Score=98.30  Aligned_cols=74  Identities=26%  Similarity=0.489  Sum_probs=23.7

Q ss_pred             CccCCCCCCCCCeeeec----CCceeeecCCCcccCCCCccc--------ccccccCCCCCCCCCCeeecC--CCceeee
Q psy2857         243 NECQSNPCGVNATCIDT----QGSYSCVCKEHYTGDPYQACS--------DIDECKALDKPCGLRAICENT--VPGFNCL  308 (332)
Q Consensus       243 ~~C~~~~C~~~~~C~~~----~~~~~C~C~~G~~g~~~~~C~--------~~d~C~~~~~~C~~~~~C~~~--~g~~~C~  308 (332)
                      +.|...+|..++.|.+.    ..+++|.|++||+|..++.|.        +++.|..  .+|.+++.+...  ...++|.
T Consensus       436 ~~C~~C~C~~~gtc~~~~~Cd~~tg~C~C~~g~~G~~Ce~C~~G~~g~~~~~~~C~~--C~C~~~gs~~~~C~~~tG~C~  513 (525)
T 4aqs_A          436 YGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRP--CDCDLGGALNNSCSEDSGQCS  513 (525)
T ss_dssp             TSSEECCCCTTTBCCSSCCBCTTTCCBCBCTTCCSTTTCC----------------------------------------
T ss_pred             CCCccCCCCCCceecCCCcccCCCCEEECCCCCcCCCcccCCCCccCCCCCCCCCcC--CCCCCCCccCCccCCCCCeeE
Confidence            44555555555555432    234589999999999887653        4566754  467766655433  2234899


Q ss_pred             CCCCCCCCCC
Q psy2857         309 CPKGYSGKPD  318 (332)
Q Consensus       309 C~~g~~g~~~  318 (332)
                      |++||+|..+
T Consensus       514 C~~G~~G~~C  523 (525)
T 4aqs_A          514 CLPHMIGRQC  523 (525)
T ss_dssp             ----------
T ss_pred             CCCCCcCCCC
Confidence            9999999843

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.75  E-value=6.8e-09  Score=93.37  Aligned_cols=78  Identities=35%  Similarity=0.847  Sum_probs=64.9

Q ss_pred             CcCCCCCCCCCCeeeeCCCCeEeeCCCCCccCCCCCCCCcccccCCCCCCCCCCceeeCCCCeeeeCCCCCCCCCCCccc
Q psy2857          20 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVA   99 (332)
Q Consensus        20 ~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~c~~~~~~C~~~~~C~~~~~~~~C~C~~g~~~~~~~~~~   99 (332)
                      |+|...+|...+.|+++.++|.|.|++||.+.+...|+++++|.. +.+|..  .|+++.++|.|.|.+||.+....+ .
T Consensus         1 ~eC~~~~~~c~~~C~~~~~~y~C~C~~G~~~~~~~~C~dideC~~-~~~C~~--~C~n~~g~~~C~C~~g~~~~~~~~-~   76 (400)
T 3p5b_L            1 NECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQD-PDTCSQ--LCVNLEGGYKCQCEEGFQLDPHTK-A   76 (400)
T ss_dssp             CCTTTTGGGCSSEEEECSSSEEEECCTTEEECSSSCEEECCCCST-TSSCSS--CCBCCSSSCBCCCCTTCCCCTTTS-S
T ss_pred             CcccCCCCCCCCEeECCCCCeEEECCCCCCcCCCCcccCchhhhc-cCCCCC--ccCCCccceeeecccccccccccc-c
Confidence            578888876678999999999999999999754467899999973 578864  899999999999999999875544 4


Q ss_pred             ee
Q psy2857         100 CE  101 (332)
Q Consensus       100 c~  101 (332)
                      |.
T Consensus        77 C~   78 (400)
T 3p5b_L           77 CK   78 (400)
T ss_dssp             CC
T ss_pred             ee
Confidence            53

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.63  E-value=7e-09  Score=92.86  Aligned_cols=83  Identities=28%  Similarity=0.720  Sum_probs=20.9

Q ss_pred             ccCCcCCCCCCCCCCeeeeCCCCeEeeCCCCCccCCC-CCCCCcccccCCCCCCCCCCceeeCCCCeeeeCCCCCCCCCC
Q psy2857          17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPY-QACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPD   95 (332)
Q Consensus        17 ~~~~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~g~~~-~~C~~~~~c~~~~~~C~~~~~C~~~~~~~~C~C~~g~~~~~~   95 (332)
                      +|+|+|...++...+.|.+..++|.|.|++||+..+. ..|.++++|. .+.+|.+  .|+++.++|.|.|.+||.+...
T Consensus         1 ~~~~~C~~~~~~c~~~C~~~~g~~~C~C~~G~~l~~~~~~C~d~~eC~-~~~~C~~--~C~~~~g~~~C~C~~g~~l~~d   77 (386)
T 3v65_B            1 TGEENCNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECA-EEGYCSQ--GCTNSEGAFQCWCEAGYELRPD   77 (386)
T ss_dssp             ----------------------------------------------------CCTT--EEC-----CCEECCTTEEECTT
T ss_pred             CCcCcccCCCCCCCCCCcCCCCCcEeECCCCceECCCCCccCccceeC-CcCcccC--cCCCCCCCCeEEECCCceEcCC
Confidence            3789999888655569999999999999999985432 5788999997 3578964  4999999999999999986654


Q ss_pred             Cccceeec
Q psy2857          96 AKVACEQV  103 (332)
Q Consensus        96 ~~~~c~~~  103 (332)
                      .+ .|+..
T Consensus        78 ~~-~C~~~   84 (386)
T 3v65_B           78 RR-SCKAL   84 (386)
T ss_dssp             SS-CEEEC
T ss_pred             CC-eECCc
Confidence            43 56543

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=98.61  E-value=3.9e-08  Score=56.66  Aligned_cols=37  Identities=35%  Similarity=0.792  Sum_probs=33.7

Q ss_pred             ccCccCCCCCCCCCeeeecCCceeeecCCCcccCCCC
Q psy2857         241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQ  277 (332)
Q Consensus       241 ~~~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~  277 (332)
                      ++++|.+.||.++++|++..++|+|.|++||+|..++
T Consensus         2 d~d~C~~~pC~ngg~C~~~~~~~~C~C~~G~~G~~Ce   38 (39)
T 1edm_B            2 DGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE   38 (39)
T ss_dssp             CCCTTTTCCCCTTCEEEEETTEEEEECCTTCCSTTSC
T ss_pred             ccccCCCCCCCCCCEeEcCCCceEeECCCCCcCCccC
Confidence            5789999999999999999999999999999998653

>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A

Probab=98.59  E-value=6.1e-08  Score=55.84  Aligned_cols=37  Identities=38%  Similarity=0.807  Sum_probs=33.8

Q ss_pred             ccCCcCCCCCCCCCCeeeeCCCCeEeeCCCCCccCCC
Q psy2857          17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPY   53 (332)
Q Consensus        17 ~~~~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~g~~~   53 (332)
                      +|+++|.+.||.++++|++..++|.|.|++||+|..+
T Consensus         1 ~d~d~C~~~pC~ngg~C~~~~~~~~C~C~~G~~G~~C   37 (39)
T 1edm_B            1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNC   37 (39)
T ss_dssp             CCCCTTTTCCCCTTCEEEEETTEEEEECCTTCCSTTS
T ss_pred             CccccCCCCCCCCCCEeEcCCCceEeECCCCCcCCcc
Confidence            4789999999999999999999999999999999754

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=98.56  E-value=5.7e-08  Score=60.02  Aligned_cols=40  Identities=28%  Similarity=0.591  Sum_probs=34.1

Q ss_pred             cccccCccCCCCCCCCCee-----eecCCceeeecCCCcccCCCC
Q psy2857         238 NRVDINECQSNPCGVNATC-----IDTQGSYSCVCKEHYTGDPYQ  277 (332)
Q Consensus       238 ~~~~~~~C~~~~C~~~~~C-----~~~~~~~~C~C~~G~~g~~~~  277 (332)
                      ..+++++|.++||.++++|     ++..++|+|.|++||+|..++
T Consensus         4 c~~~~~eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~CE   48 (55)
T 3u7u_G            4 HLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQ   48 (55)
T ss_dssp             CEEECCSTTTTTSCTTCEEEEECCC--CCCEEEEECTTEESTTSC
T ss_pred             CcccCCCCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCCcCCCcC
Confidence            4567899999999999999     466789999999999999876

>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens}

Probab=98.40  E-value=1.9e-07  Score=57.61  Aligned_cols=41  Identities=27%  Similarity=0.584  Sum_probs=34.1

Q ss_pred             eecccCCcCCCCCCCCCCeee-----eCCCCeEeeCCCCCccCCCC
Q psy2857          14 RAIVDINECQSNPCGVNATCI-----DTQGSYSCVCKEHYTGDPYQ   54 (332)
Q Consensus        14 ~~~~~~~~C~~~~C~~~g~C~-----~~~g~~~C~C~~G~~g~~~~   54 (332)
                      ...+++|+|.++||.++|+|+     +..++|.|.|++||+|..++
T Consensus         3 ~c~~~~~eC~s~pC~NgGtC~~~~~~d~~~~y~C~C~~g~~G~~CE   48 (55)
T 3u7u_G            3 SHLVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCPNEFTGDRCQ   48 (55)
T ss_dssp             CCEEECCSTTTTTSCTTCEEEEECCC--CCCEEEEECTTEESTTSC
T ss_pred             CCcccCCCCcCCCCCCCCCcCCCCccCCCCCEeEeCCCCCcCCCcC
Confidence            344789999999999999994     56779999999999998765

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=98.37  E-value=1.2e-07  Score=59.84  Aligned_cols=45  Identities=31%  Similarity=0.661  Sum_probs=37.1

Q ss_pred             ccccCccCCCCCCCC--CeeeecCCceeeecCCCcc-cCCCCccccccccc
Q psy2857         239 RVDINECQSNPCGVN--ATCIDTQGSYSCVCKEHYT-GDPYQACSDIDECK  286 (332)
Q Consensus       239 ~~~~~~C~~~~C~~~--~~C~~~~~~~~C~C~~G~~-g~~~~~C~~~d~C~  286 (332)
                      +.++|+|.++||.++  ++|++..++|.|.|++||+ |..+   ++.++|.
T Consensus         8 ~~~~d~C~snPC~nga~gtC~~~~g~y~C~C~~Gy~~G~~C---~~~~~C~   55 (61)
T 2k2s_B            8 SETPAACSSNPCGPEAAGTCKETNSGYICRCNQGYRISLDG---TGNVTCI   55 (61)
T ss_dssp             TTSCCHHHHCSSCSSSCCEEEECSSEEEEECCTTEEEEECS---SSCEEEE
T ss_pred             cCCCCcCcCCCCcCCCccccccCCCceEeECCCCCccCCCC---CCCCEec
Confidence            456789999999998  8999999999999999999 8754   3445553

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=98.25  E-value=1.2e-06  Score=54.04  Aligned_cols=37  Identities=32%  Similarity=0.723  Sum_probs=32.7

Q ss_pred             ccCccCCC---CCCCCCeee--ecCCceeeecCCCcccCCCC
Q psy2857         241 DINECQSN---PCGVNATCI--DTQGSYSCVCKEHYTGDPYQ  277 (332)
Q Consensus       241 ~~~~C~~~---~C~~~~~C~--~~~~~~~C~C~~G~~g~~~~  277 (332)
                      ++++|.+.   ||.++++|+  +..++|+|.|++||+|..++
T Consensus         2 ~i~~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce   43 (53)
T 1egf_A            2 SYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQ   43 (53)
T ss_dssp             EECCCCTTSSCSSCSSCEEEEESSSSCEEEECCTTCCSSSSC
T ss_pred             CcccCCCCCCCcCCCCcEEEeeCCCCCEEEECCCCCcCCcCC
Confidence            56788876   999999999  78899999999999998765

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=98.24  E-value=1.3e-06  Score=84.09  Aligned_cols=81  Identities=33%  Similarity=0.818  Sum_probs=61.9

Q ss_pred             cCCcCCCCCCCCCCeeeeCCCCeEeeCCCCCccCCCCCCCCcccccCCCCCCCCCCceeeCCCCeeeeCCCCCCCCCCCc
Q psy2857          18 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAK   97 (332)
Q Consensus        18 ~~~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~c~~~~~~C~~~~~C~~~~~~~~C~C~~g~~~~~~~~   97 (332)
                      ++++|...+..-.+.|+++.++|.|.|++||.+.....|+++++|.. +.+|+  ..|+++.++|.|.|.+||.+....+
T Consensus       293 ~~~eC~~~~~~C~~~C~~~~~~~~C~C~~G~~~~~~~~C~dideC~~-~~~C~--~~C~n~~g~y~C~C~~G~~~~~~~~  369 (699)
T 1n7d_A          293 GTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQD-PDTCS--QLCVNLEGGYKCQCEEGFQLDPHTK  369 (699)
T ss_dssp             CCCCTTSSTTTSCTTCCCCTTCCCCCCCSSSCCCSSSCCCCCCCCSS-SSSCT--TTCCBCSSCBCCCCCSSCBCCSSCC
T ss_pred             ccccccccccCcCCCcccCCCCcEEeCCCCeEcCCCCcccCccccCC-CCccc--cccccCCCCeeeeeecccccCCCCC
Confidence            45566554311235899999999999999999754577999999973 56785  5999999999999999999865544


Q ss_pred             cceee
Q psy2857          98 VACEQ  102 (332)
Q Consensus        98 ~~c~~  102 (332)
                       .|..
T Consensus       370 -~C~~  373 (699)
T 1n7d_A          370 -ACKA  373 (699)
T ss_dssp             -CCBC
T ss_pred             -cccc
Confidence             4543

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=98.24  E-value=3e-06  Score=65.70  Aligned_cols=57  Identities=26%  Similarity=0.628  Sum_probs=35.9

Q ss_pred             eee-cCCCcccCCCCcccc-----------cccccCCCCCCCCCC------eeecCCCceeeeCCCCCCCCCCCCccccc
Q psy2857         264 SCV-CKEHYTGDPYQACSD-----------IDECKALDKPCGLRA------ICENTVPGFNCLCPKGYSGKPDAKVACEQ  325 (332)
Q Consensus       264 ~C~-C~~G~~g~~~~~C~~-----------~d~C~~~~~~C~~~~------~C~~~~g~~~C~C~~g~~g~~~~~~~c~~  325 (332)
                      +|+ |+++|+|..++.|..           .+.|..  -.|.+.+      .|....|  +|.|++||+|....+  |.+
T Consensus        76 ~C~~C~~g~~G~~Ce~C~~Gy~g~~~~~~~~~~C~~--C~C~~~Gs~~~~~~Cd~~tG--~C~C~~g~~G~~Cd~--C~~  149 (162)
T 1klo_A           76 ECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKA--CACNPYGTVQQQSSCNPVTG--QCQCLPHVSGRDCGT--CDP  149 (162)
T ss_dssp             CBCCBCTTEETTTTCEECTTEEECTTCSSGGGSEEE--CCCCTTTBGGGCCCCCTTTC--CCCBCTTEESTTCCE--ECT
T ss_pred             cccCCCCCCcCCCcCcCchhhcCCccccCCCCCCee--ccCCCCCccCCCCCCCCCCC--EeECCCCCcCCCCCC--CCC
Confidence            674 777777776655532           223332  2455543      6765555  899999999998765  665


Q ss_pred             c
Q psy2857         326 E  326 (332)
Q Consensus       326 ~  326 (332)
                      .
T Consensus       150 g  150 (162)
T 1klo_A          150 G  150 (162)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.24  E-value=6.3e-07  Score=87.00  Aligned_cols=70  Identities=33%  Similarity=0.823  Sum_probs=56.9

Q ss_pred             CeeeeCCCCeEeeCCCCCccCCCCCCCCcccccCCCCCCCCCCceeeCCCCeeeeCCCCCCCCCCCccceeecc
Q psy2857          31 ATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQVD  104 (332)
Q Consensus        31 g~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~c~~~~~~C~~~~~C~~~~~~~~C~C~~g~~~~~~~~~~c~~~~  104 (332)
                      +.|+++.++|.|.|++||.+.....|.++++|. .+.+|+  ..|+++.++|.|.|.+||.+....+ .|..++
T Consensus       324 ~~C~~~~~~y~C~C~~Gy~l~~g~~C~dideC~-~~~~C~--~~C~n~~gsy~C~C~~Gy~l~~~~~-~C~~~~  393 (791)
T 3m0c_C          324 HVCNDLKIGYECLCPDGFQLVAQRRCEDIDECQ-DPDTCS--QLCVNLEGGYKCQCEEGFQLDPHTK-ACKAVG  393 (791)
T ss_dssp             SEEEECSBSEEEECCTTCEEETTTEEECCCCCS-SSSSCT--TTCCBCSSCBCCCCCSSEECCSSCC-CCEETT
T ss_pred             ccccCCCCCcccCCCCCCccCCCCccccCcccC-CCCCCC--CeeecCCCCceeecCCCCEeCCCCc-eeeecc
Confidence            489999999999999999864446788999997 356774  5899999999999999998865544 565543

>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A

Probab=98.21  E-value=3.6e-07  Score=57.74  Aligned_cols=39  Identities=28%  Similarity=0.768  Sum_probs=34.1

Q ss_pred             cccccccccCCCCCCCCC--CeeecCCCceeeeCCCCCC-CCCC
Q psy2857         278 ACSDIDECKALDKPCGLR--AICENTVPGFNCLCPKGYS-GKPD  318 (332)
Q Consensus       278 ~C~~~d~C~~~~~~C~~~--~~C~~~~g~~~C~C~~g~~-g~~~  318 (332)
                      .+.++|+|..  .||.++  ++|++..++|.|.|++||+ |..+
T Consensus         7 ~~~~~d~C~s--nPC~nga~gtC~~~~g~y~C~C~~Gy~~G~~C   48 (61)
T 2k2s_B            7 LSETPAACSS--NPCGPEAAGTCKETNSGYICRCNQGYRISLDG   48 (61)
T ss_dssp             CTTSCCHHHH--CSSCSSSCCEEEECSSEEEEECCTTEEEEECS
T ss_pred             hcCCCCcCcC--CCCcCCCccccccCCCceEeECCCCCccCCCC
Confidence            4678899985  689988  8999999999999999999 8754

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=98.16  E-value=1.8e-06  Score=51.23  Aligned_cols=34  Identities=29%  Similarity=0.569  Sum_probs=29.0

Q ss_pred             ccCCC---CCCCCCeee--ecCCceeeecCCCcccCCCC
Q psy2857         244 ECQSN---PCGVNATCI--DTQGSYSCVCKEHYTGDPYQ  277 (332)
Q Consensus       244 ~C~~~---~C~~~~~C~--~~~~~~~C~C~~G~~g~~~~  277 (332)
                      +|.+.   ||.++++|+  +..++|+|.|++||+|..++
T Consensus         2 ~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce   40 (45)
T 1a3p_A            2 GXPSSYDGYCLNGGVXMHIESLDSYTCNCVIGYSGDRCQ   40 (45)
T ss_dssp             CCTTCCSSCCSSSCEEEECTTTSSEEEECCTTEETTTTC
T ss_pred             CcccCCCCCCCCCCEEEeecCCCCEEEEcCCCCcCCcCC
Confidence            45555   999999998  67789999999999998765

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=98.16  E-value=1.6e-06  Score=53.54  Aligned_cols=42  Identities=36%  Similarity=0.882  Sum_probs=34.2

Q ss_pred             cccccccCC--------CCCCCCCCeeecCCCceeeeCCCCCCCCCCCCcccc
Q psy2857         280 SDIDECKAL--------DKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACE  324 (332)
Q Consensus       280 ~~~d~C~~~--------~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~~~c~  324 (332)
                      +|||+|...        ..+|.  ++|+|+.|+|.|.|++||++....+ .|.
T Consensus         2 ~DidEC~~~~~~~~~~~~~~C~--~~C~n~~Gsy~C~C~~Gy~~~~d~~-~C~   51 (53)
T 1apq_A            2 VDLDECASRSKSGEEDPQPQCQ--HLCHNYVGGYFCSCRPGYELQEDRH-SCQ   51 (53)
T ss_dssp             CSCCTTTCSTTTCCCSSSCTTS--SEEEEETTEEEEECSTTCEECTTSS-CEE
T ss_pred             CccccccCcccccccccCCCCC--CEeECCCCCeEEECCCCCeECCCCC-ccC
Confidence            578999764        26785  5999999999999999999987655 564

>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A

Probab=98.15  E-value=2.2e-06  Score=52.79  Aligned_cols=37  Identities=32%  Similarity=0.723  Sum_probs=32.8

Q ss_pred             cCCcCCCC---CCCCCCeee--eCCCCeEeeCCCCCccCCCC
Q psy2857          18 DINECQSN---PCGVNATCI--DTQGSYSCVCKEHYTGDPYQ   54 (332)
Q Consensus        18 ~~~~C~~~---~C~~~g~C~--~~~g~~~C~C~~G~~g~~~~   54 (332)
                      +|++|.+.   ||.++|+|+  +..++|.|.|++||+|..++
T Consensus         2 ~i~~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce   43 (53)
T 1egf_A            2 SYPGCPSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQ   43 (53)
T ss_dssp             EECCCCTTSSCSSCSSCEEEEESSSSCEEEECCTTCCSSSSC
T ss_pred             CcccCCCCCCCcCCCCcEEEeeCCCCCEEEECCCCCcCCcCC
Confidence            67899987   999999999  77899999999999997654

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=98.14  E-value=9.9e-07  Score=56.63  Aligned_cols=43  Identities=19%  Similarity=0.412  Sum_probs=36.0

Q ss_pred             CccCCCCCCCCCeeee-----cCCceeeecCCCcccCCCCcccccccccC
Q psy2857         243 NECQSNPCGVNATCID-----TQGSYSCVCKEHYTGDPYQACSDIDECKA  287 (332)
Q Consensus       243 ~~C~~~~C~~~~~C~~-----~~~~~~C~C~~G~~g~~~~~C~~~d~C~~  287 (332)
                      ++|.++||.++++|++     ..++|+|.|++||+|..++  .++|++..
T Consensus         7 ~~C~~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~Ce--~~i~~~~~   54 (63)
T 1hae_A            7 AEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT--ENVPMKVQ   54 (63)
T ss_dssp             CHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSC--EECCSSCT
T ss_pred             CCCCCCcCCCCcEEecCCccCCCCCEEEECCCCCcCCccC--cCcCcccc
Confidence            5788899999999997     5679999999999999776  56777753

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=98.14  E-value=1.2e-06  Score=57.50  Aligned_cols=37  Identities=27%  Similarity=0.569  Sum_probs=29.5

Q ss_pred             cccccccCCCCCCCCCCeeecCCCceeee-CCCCCCCC
Q psy2857         280 SDIDECKALDKPCGLRAICENTVPGFNCL-CPKGYSGK  316 (332)
Q Consensus       280 ~~~d~C~~~~~~C~~~~~C~~~~g~~~C~-C~~g~~g~  316 (332)
                      +|||||....++|.++++|+|+.|+|+|. +..||+++
T Consensus         1 ~DidEC~~~~~~C~~~~~C~Nt~Gsy~C~~~~~g~~~~   38 (71)
T 2kl7_A            1 SDVNECLTIPEACKGEMKCINHYGGYLCLPRSAAVIND   38 (71)
T ss_dssp             CCSCCTTCCCCSCTTEEEEEETTCCEEEEETTSCCCSC
T ss_pred             CccccccCCCCCCCCCCEeECCCCCeEecccCCccccc
Confidence            47999988778999888999999999998 33344443

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=98.06  E-value=1.7e-06  Score=70.16  Aligned_cols=62  Identities=21%  Similarity=0.409  Sum_probs=44.5

Q ss_pred             CCCCCCCeeeeCCCCeEeeCCCCCccCCCCCCCC--------cccccCC--CCCCCCCCceeeCCCCeeeeCCCC-----
Q psy2857          25 NPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSD--------IDECKAL--DKPCGLRAICENTVPGFNCLCPKG-----   89 (332)
Q Consensus        25 ~~C~~~g~C~~~~g~~~C~C~~G~~g~~~~~C~~--------~~~c~~~--~~~C~~~~~C~~~~~~~~C~C~~g-----   89 (332)
                      ..|+.+|+|+.    ..|.|.+||+|..++ |..        ...|...  ..+|++++.|+..    .|.|.+|     
T Consensus        96 ~~Csg~G~C~~----g~C~C~~G~~G~~Ce-c~~~~~~~~~~~~~C~~~~~~~~Csg~G~C~~g----~C~C~~gw~~~~  166 (217)
T 2p28_B           96 SLCHGKGFLEC----GICRCDTGYIGKNCE-CQTQGRSSQELEGSCRKDNNSIICSGLGDCVCG----QCLCHTSDVPGK  166 (217)
T ss_dssp             CTTTTSEEEET----TEEEECTTEESTTSC-EECCCCC-GGGGGGGBSSTTSCBGGGTEEEETT----EEEECCCCSTTC
T ss_pred             CccCCCceEEC----CEEECCCCccCCccc-ccCcccccccCCCcCCCCCCCCCCCCCCEEeCC----ceECCCCCCCcc
Confidence            34999999986    379999999998875 211        1235421  3578889999853    8999999     


Q ss_pred             -CCCCCC
Q psy2857          90 -YSGKPD   95 (332)
Q Consensus        90 -~~~~~~   95 (332)
                       |+|..+
T Consensus       167 ~~~G~~C  173 (217)
T 2p28_B          167 LIYGQYC  173 (217)
T ss_dssp             CEESTTS
T ss_pred             cEECCCc
Confidence             577633

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=98.05  E-value=3e-06  Score=52.63  Aligned_cols=43  Identities=26%  Similarity=0.520  Sum_probs=33.1

Q ss_pred             CccCC--CCCCCCCeeeecCCceeeecCCCcccCCC-CcccccccccC
Q psy2857         243 NECQS--NPCGVNATCIDTQGSYSCVCKEHYTGDPY-QACSDIDECKA  287 (332)
Q Consensus       243 ~~C~~--~~C~~~~~C~~~~~~~~C~C~~G~~g~~~-~~C~~~d~C~~  287 (332)
                      |||..  .+|.  +.|+|++++|+|.|++||.+... .+|.++|+|.-
T Consensus         2 dEC~~~~~~C~--~~C~nt~Gsy~C~C~~Gy~L~~d~~~C~didec~c   47 (55)
T 2jkh_L            2 KLCSLDNGDCD--QFCHEEQNSVVCSCARGYTLADNGKACIPTGPYPC   47 (55)
T ss_dssp             CCTTTGGGGCS--SEEEEETTEEEEECCTTEEECTTSSCEEESSSSCT
T ss_pred             ccccCCCCCcC--cEeEcCCCCeEEeCCCCCEECCCCCeeccCccccC
Confidence            45653  3453  58999999999999999986543 57999998843

>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A

Probab=98.03  E-value=5.7e-06  Score=64.11  Aligned_cols=28  Identities=32%  Similarity=0.656  Sum_probs=22.3

Q ss_pred             CCCCCCceeeCC--CCeee-eCCCCCCCCCC
Q psy2857          68 PCGLRAICENTV--PGFNC-LCPKGYSGKPD   95 (332)
Q Consensus        68 ~C~~~~~C~~~~--~~~~C-~C~~g~~~~~~   95 (332)
                      +|.++++|+...  +.+.| .|..+|.|..+
T Consensus         2 ~C~~~g~C~~~~~~g~~~C~~C~~g~~G~~C   32 (162)
T 1klo_A            2 PCPGGSSCAIVPKTKEVVCTHCPTGTAGKRC   32 (162)
T ss_dssp             CSCTTCCEEECSSSCCEEECSCCTTEESTTS
T ss_pred             cCcCcCcccccCCCCCEEeCCCCCCCcCCCC
Confidence            477789998765  56899 79999999844

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=98.03  E-value=3.2e-06  Score=50.18  Aligned_cols=36  Identities=31%  Similarity=0.587  Sum_probs=30.2

Q ss_pred             ccCccCC---CCCCCCCeeeecC--CceeeecCCCcccCCCC
Q psy2857         241 DINECQS---NPCGVNATCIDTQ--GSYSCVCKEHYTGDPYQ  277 (332)
Q Consensus       241 ~~~~C~~---~~C~~~~~C~~~~--~~~~C~C~~G~~g~~~~  277 (332)
                      ++++|.+   +||.+ ++|++..  ++|.|.|++||+|..++
T Consensus         2 ~i~~C~~~~~~pC~n-G~C~~~~~~~~~~C~C~~GytG~~Ce   42 (46)
T 1k36_A            2 SITKCSSDMNGYCLH-GQCIYLVDMSQNYCRCEVGYTGVRCE   42 (46)
T ss_dssp             CEECCCTTCCSSCSS-EEEEEETTTTEEEEEECTTCSSTTSC
T ss_pred             ccccCCCCCCCCCCC-CEeeccCCCCCEEEECCCCCccCCCC
Confidence            4677877   89988 8999755  68999999999999765

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=98.01  E-value=2.1e-06  Score=53.31  Aligned_cols=44  Identities=23%  Similarity=0.545  Sum_probs=35.9

Q ss_pred             ccccCCCCCCCCCCeeecCCCceeeeCCCCCCCCCCCCccccccccC
Q psy2857         283 DECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQEKAG  329 (332)
Q Consensus       283 d~C~~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~~~c~~~~~~  329 (332)
                      |||....+.|.  +.|+|+.|+|+|.|++||+...+.+ +|.++++.
T Consensus         2 dEC~~~~~~C~--~~C~nt~Gsy~C~C~~Gy~L~~d~~-~C~didec   45 (55)
T 2jkh_L            2 KLCSLDNGDCD--QFCHEEQNSVVCSCARGYTLADNGK-ACIPTGPY   45 (55)
T ss_dssp             CCTTTGGGGCS--SEEEEETTEEEEECCTTEEECTTSS-CEEESSSS
T ss_pred             ccccCCCCCcC--cEeEcCCCCeEEeCCCCCEECCCCC-eeccCccc
Confidence            67776556785  5899999999999999999887765 78877663

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=97.96  E-value=3.4e-06  Score=54.89  Aligned_cols=46  Identities=24%  Similarity=0.483  Sum_probs=38.9

Q ss_pred             cccccccCCCCCCCCCCeeecCCC-ceeeeCCCCCCCCCCCCcccccccc
Q psy2857         280 SDIDECKALDKPCGLRAICENTVP-GFNCLCPKGYSGKPDAKVACEQEKA  328 (332)
Q Consensus       280 ~~~d~C~~~~~~C~~~~~C~~~~g-~~~C~C~~g~~g~~~~~~~c~~~~~  328 (332)
                      .|+|+|....+.|.  ..|+++.+ +|.|.|++||....+.+ +|.++++
T Consensus         3 ~d~~eC~~~nggC~--h~C~n~~g~s~~C~C~~Gy~L~~D~~-tC~d~de   49 (69)
T 1kli_L            3 DDQLICVNENGGCE--QYCSDHTGTKRSCRCHEGYSLLADGV-SCTPTVE   49 (69)
T ss_dssp             SCCCCTTSGGGGCS--SEEEEETTTEEEEECCTTEEECTTSS-CEEECSS
T ss_pred             cccccccCCCCCcC--CEeEcCCCCCEEEeCCCCCeECCCCC-cccCccc
Confidence            57899987667785  68999999 89999999999988776 7887765

>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}

Probab=97.95  E-value=2.1e-05  Score=73.10  Aligned_cols=37  Identities=22%  Similarity=0.588  Sum_probs=0.0

Q ss_pred             ccCccCCCCCCCCCeeeec--CCceeeecCCCcccCCCC
Q psy2857         241 DINECQSNPCGVNATCIDT--QGSYSCVCKEHYTGDPYQ  277 (332)
Q Consensus       241 ~~~~C~~~~C~~~~~C~~~--~~~~~C~C~~G~~g~~~~  277 (332)
                      +++.|.+.+|.+++.+.+.  ...++|.|++||+|..|+
T Consensus       486 ~~~~C~~C~C~~~gs~~~~C~~~tG~C~C~~G~~G~~Ce  524 (525)
T 4aqs_A          486 DLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHMIGRQCN  524 (525)
T ss_dssp             ---------------------------------------
T ss_pred             CCCCCcCCCCCCCCccCCccCCCCCeeECCCCCcCCCCC
Confidence            4456777777777665543  234589999999998654

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=97.93  E-value=7.5e-06  Score=53.23  Aligned_cols=48  Identities=27%  Similarity=0.432  Sum_probs=36.6

Q ss_pred             cccCccCCCCCCCCCeeeecCC-ceeeecCCCcccCC-CCcccccccccC
Q psy2857         240 VDINECQSNPCGVNATCIDTQG-SYSCVCKEHYTGDP-YQACSDIDECKA  287 (332)
Q Consensus       240 ~~~~~C~~~~C~~~~~C~~~~~-~~~C~C~~G~~g~~-~~~C~~~d~C~~  287 (332)
                      +|+++|....-.....|+++.+ +|+|.|++||.+.. ..+|.++|+|.-
T Consensus         3 ~d~~eC~~~nggC~h~C~n~~g~s~~C~C~~Gy~L~~D~~tC~d~dec~C   52 (69)
T 1kli_L            3 DDQLICVNENGGCEQYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYPC   52 (69)
T ss_dssp             SCCCCTTSGGGGCSSEEEEETTTEEEEECCTTEEECTTSSCEEECSSSCT
T ss_pred             cccccccCCCCCcCCEeEcCCCCCEEEeCCCCCeECCCCCcccCcccccC
Confidence            4678886533223468999999 89999999998764 367999998843

>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A

Probab=97.93  E-value=1.2e-05  Score=65.13  Aligned_cols=99  Identities=17%  Similarity=0.342  Sum_probs=68.3

Q ss_pred             CcccceeeccccCcccccccCCcccccceecccccceecccccEEecccCccccccc----cCccC----CCCCCCCCee
Q psy2857         185 RWEFNVTLLFYETDYLHSVASDISDILTIIHEFSRIFSKHLKLFVIEDAKRNLNRVD----INECQ----SNPCGVNATC  256 (332)
Q Consensus       185 ~c~~~~~c~~~~~~~~~~~~~~~~~~~c~c~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~C~----~~~C~~~~~C  256 (332)
                      .|+.+++|.               ...|.|.+          ||++..|.-......    ...|.    ..+|.++++|
T Consensus        97 ~Csg~G~C~---------------~g~C~C~~----------G~~G~~Cec~~~~~~~~~~~~~C~~~~~~~~Csg~G~C  151 (217)
T 2p28_B           97 LCHGKGFLE---------------CGICRCDT----------GYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDC  151 (217)
T ss_dssp             TTTTSEEEE---------------TTEEEECT----------TEESTTSCEECCCCC-GGGGGGGBSSTTSCBGGGTEEE
T ss_pred             ccCCCceEE---------------CCEEECCC----------CccCCcccccCcccccccCCCcCCCCCCCCCCCCCCEE
Confidence            466667765               36788888          999988752211000    12354    3579899999


Q ss_pred             eecCCceeeecCCC------cccCCCCcccccccccCC-CCCCCCC--CeeecCCCceeeeCCCCCCCCCC
Q psy2857         257 IDTQGSYSCVCKEH------YTGDPYQACSDIDECKAL-DKPCGLR--AICENTVPGFNCLCPKGYSGKPD  318 (332)
Q Consensus       257 ~~~~~~~~C~C~~G------~~g~~~~~C~~~d~C~~~-~~~C~~~--~~C~~~~g~~~C~C~~g~~g~~~  318 (332)
                      +..    +|.|.+|      |+|..++  .+++.|... ..+|.++  |+|+.  +  .|.|.+||+|..+
T Consensus       152 ~~g----~C~C~~gw~~~~~~~G~~Ce--~~~~~C~~~~g~~C~~~~~G~C~~--g--~C~C~~G~~G~~C  212 (217)
T 2p28_B          152 VCG----QCLCHTSDVPGKLIYGQYCE--CDTINCERYNGQVCGGPGRGLCFC--G--KCRCHPGFEGSAC  212 (217)
T ss_dssp             ETT----EEEECCCCSTTCCEESTTSC--EESSCSCEETTEETTCTTTEEEET--T--EEEECTTEESTTS
T ss_pred             eCC----ceECCCCCCCcccEECCCcc--cCCccCCCCCCCCCCCCCCcEEeC--C--eeECCCCCccCCc
Confidence            852    8999999      6888765  245677542 1268877  99985  2  8999999999854

>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A

Probab=97.92  E-value=6.3e-06  Score=48.89  Aligned_cols=36  Identities=31%  Similarity=0.587  Sum_probs=30.5

Q ss_pred             cCCcCCC---CCCCCCCeeeeCC--CCeEeeCCCCCccCCCC
Q psy2857          18 DINECQS---NPCGVNATCIDTQ--GSYSCVCKEHYTGDPYQ   54 (332)
Q Consensus        18 ~~~~C~~---~~C~~~g~C~~~~--g~~~C~C~~G~~g~~~~   54 (332)
                      ++++|.+   +||.+ |+|++..  ++|.|.|++||+|..++
T Consensus         2 ~i~~C~~~~~~pC~n-G~C~~~~~~~~~~C~C~~GytG~~Ce   42 (46)
T 1k36_A            2 SITKCSSDMNGYCLH-GQCIYLVDMSQNYCRCEVGYTGVRCE   42 (46)
T ss_dssp             CEECCCTTCCSSCSS-EEEEEETTTTEEEEEECTTCSSTTSC
T ss_pred             ccccCCCCCCCCCCC-CEeeccCCCCCEEEECCCCCccCCCC
Confidence            5788988   89987 8999854  68999999999997654

>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1

Probab=97.87  E-value=1.3e-05  Score=47.44  Aligned_cols=35  Identities=29%  Similarity=0.544  Sum_probs=29.5

Q ss_pred             CcCCCC---CCCCCCeee--eCCCCeEeeCCCCCccCCCC
Q psy2857          20 NECQSN---PCGVNATCI--DTQGSYSCVCKEHYTGDPYQ   54 (332)
Q Consensus        20 ~~C~~~---~C~~~g~C~--~~~g~~~C~C~~G~~g~~~~   54 (332)
                      ++|.+.   ||.++|+|+  +..++|.|.|++||+|..++
T Consensus         1 ~~C~~~~~~pC~ngg~C~~~~~~~~~~C~C~~G~~G~~Ce   40 (45)
T 1a3p_A            1 PGXPSSYDGYCLNGGVXMHIESLDSYTCNCVIGYSGDRCQ   40 (45)
T ss_dssp             CCCTTCCSSCCSSSCEEEECTTTSSEEEECCTTEETTTTC
T ss_pred             CCcccCCCCCCCCCCEEEeecCCCCEEEEcCCCCcCCcCC
Confidence            367777   999999998  67789999999999997654

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4

Probab=97.84  E-value=4.2e-05  Score=52.74  Aligned_cols=71  Identities=21%  Similarity=0.387  Sum_probs=58.5

Q ss_pred             CccCCCCCCCCCeeee-cCCceeeecCCCcccCCCCccccccc-ccCCCCCCCCCCeeecCC-CceeeeCCCCCC
Q psy2857         243 NECQSNPCGVNATCID-TQGSYSCVCKEHYTGDPYQACSDIDE-CKALDKPCGLRAICENTV-PGFNCLCPKGYS  314 (332)
Q Consensus       243 ~~C~~~~C~~~~~C~~-~~~~~~C~C~~G~~g~~~~~C~~~d~-C~~~~~~C~~~~~C~~~~-g~~~C~C~~g~~  314 (332)
                      +.|....|..++.|+. .++...|+|..||.++.. .|..+++ |......|..++.|+.+. ..-.|.|.++|.
T Consensus        11 h~C~~t~Cp~NA~C~r~~~G~e~CrCl~gY~~dg~-~Cv~~Np~C~~nNGGCd~nAeC~~~~~~ki~C~C~~~~~   84 (105)
T 1n1i_A           11 HKCIDTNVPENAACYRYLDGTEEWRCLLGFKEVGG-KCVPASITCEENNGGCAPEAECTMDDKKEVECKCTKEGS   84 (105)
T ss_dssp             TSCCSSCCCTTEEEEECTTSCEEEEECTTEEECSS-SEEECCCCTTSGGGGSCTTSEEEECTTSCEEEECCSTTC
T ss_pred             cEecCCCCCCCCCeEECCCCCEeEEEECCeeccCC-EEEECCcchhhcCCCcCCCcEeEECCCCEEEeECCCCCC
Confidence            3566667888999988 778889999999999864 4877788 877777899999999875 667999999863

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=97.81  E-value=2.4e-06  Score=52.35  Aligned_cols=39  Identities=26%  Similarity=0.581  Sum_probs=32.0

Q ss_pred             eeeecCCCcccCCCCcccccccccCCCCCCCCCCeeec----CCCceeeeCCCCCCCCC
Q psy2857         263 YSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICEN----TVPGFNCLCPKGYSGKP  317 (332)
Q Consensus       263 ~~C~C~~G~~g~~~~~C~~~d~C~~~~~~C~~~~~C~~----~~g~~~C~C~~g~~g~~  317 (332)
                      +.|.|++||+                ..+|.++++|++    ..++|.|.|++||+|..
T Consensus         3 ~~C~C~~g~~----------------~~pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~~   45 (52)
T 3ca7_A            3 PTYKCPETFD----------------AWYCLNDAHCFAVKIADLPVYSCECAIGFMGQR   45 (52)
T ss_dssp             CCBCCCHHHH----------------HHTSCTTCEEEEEEETTEEEEEEECCTTEESTT
T ss_pred             eeeECCCCCc----------------CCcCCCCCEEecCccCCCCCEEEECCCCCcCCC
Confidence            3688999986                147888999986    35689999999999984

>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=97.79  E-value=1.5e-05  Score=52.27  Aligned_cols=35  Identities=31%  Similarity=0.715  Sum_probs=28.3

Q ss_pred             ccCccCC--CCCCCCCeeeecCCceeee-cCCCcccCC
Q psy2857         241 DINECQS--NPCGVNATCIDTQGSYSCV-CKEHYTGDP  275 (332)
Q Consensus       241 ~~~~C~~--~~C~~~~~C~~~~~~~~C~-C~~G~~g~~  275 (332)
                      +||||..  .+|..+++|+|+.++|+|. +..||.+..
T Consensus         2 DidEC~~~~~~C~~~~~C~Nt~Gsy~C~~~~~g~~~~~   39 (71)
T 2kl7_A            2 DVNECLTIPEACKGEMKCINHYGGYLCLPRSAAVINDL   39 (71)
T ss_dssp             CSCCTTCCCCSCTTEEEEEETTCCEEEEETTSCCCSCC
T ss_pred             ccccccCCCCCCCCCCEeECCCCCeEecccCCcccccc
Confidence            6789975  5788888999999999997 556787654

>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A

Probab=97.77  E-value=2.2e-05  Score=53.85  Aligned_cols=69  Identities=23%  Similarity=0.546  Sum_probs=55.8

Q ss_pred             cCCCCCCCCCeeee-cCCceeeecCCCcccCCCCccccc--ccccCCCCCCCCCCeeecCC-----CceeeeCCCCCC
Q psy2857         245 CQSNPCGVNATCID-TQGSYSCVCKEHYTGDPYQACSDI--DECKALDKPCGLRAICENTV-----PGFNCLCPKGYS  314 (332)
Q Consensus       245 C~~~~C~~~~~C~~-~~~~~~C~C~~G~~g~~~~~C~~~--d~C~~~~~~C~~~~~C~~~~-----g~~~C~C~~g~~  314 (332)
                      |....|..++.|.. ..+...|+|.+||.++.. .|..+  +.|+.....|..++.|+...     +...|.|.+||.
T Consensus         7 C~~~~C~~NA~C~r~~~g~e~C~C~~gy~gdg~-~Cv~~~~~sC~~nNGGCd~nA~C~~~~~~~~~~ki~C~C~~g~~   83 (99)
T 1ob1_C            7 CVKKQCPQNSGCFRHLDEREECKCLLNYKQEGD-KCVENPNPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDS   83 (99)
T ss_dssp             CCSCCCCTTEEEECCTTSCCEEEECTTEEEETT-EEEECSCCCSTTGGGGCCTTEEEECCSCSSSSCCCEEEECSTTC
T ss_pred             eccCCCCCCCCeEEcCCCCEEEEecCCeecCCC-eEeeCCCCChhhcCCCcCCCceeEecCCcccCCceEeEeCCCCc
Confidence            55567788999987 577889999999999864 47766  58887767899999998775     567999999974

>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A

Probab=97.73  E-value=9.2e-06  Score=52.03  Aligned_cols=42  Identities=19%  Similarity=0.428  Sum_probs=33.4

Q ss_pred             CCcCCCCCCCCCCeeee-----CCCCeEeeCCCCCccCCCCCCCCcccc
Q psy2857          19 INECQSNPCGVNATCID-----TQGSYSCVCKEHYTGDPYQACSDIDEC   62 (332)
Q Consensus        19 ~~~C~~~~C~~~g~C~~-----~~g~~~C~C~~G~~g~~~~~C~~~~~c   62 (332)
                      .++|.++||.++|+|++     ..++|.|.|++||+|..++  .+++++
T Consensus         6 c~~C~~~pC~ngG~C~~~~~~~~~~~y~C~C~~Gf~G~~Ce--~~i~~~   52 (63)
T 1hae_A            6 CAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT--ENVPMK   52 (63)
T ss_dssp             CCHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSC--EECCSS
T ss_pred             cCCCCCCcCCCCcEEecCCccCCCCCEEEECCCCCcCCccC--cCcCcc
Confidence            36788889999999997     5689999999999997654  244444

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=97.72  E-value=3.1e-05  Score=47.63  Aligned_cols=33  Identities=33%  Similarity=0.815  Sum_probs=27.4

Q ss_pred             ccCccCC----------CCCCCCCeeeecCCceeeecCCCcccCC
Q psy2857         241 DINECQS----------NPCGVNATCIDTQGSYSCVCKEHYTGDP  275 (332)
Q Consensus       241 ~~~~C~~----------~~C~~~~~C~~~~~~~~C~C~~G~~g~~  275 (332)
                      +||+|..          .+|.  +.|+++.++|+|.|++||++..
T Consensus         3 DidEC~~~~~~~~~~~~~~C~--~~C~n~~Gsy~C~C~~Gy~~~~   45 (53)
T 1apq_A            3 DLDECASRSKSGEEDPQPQCQ--HLCHNYVGGYFCSCRPGYELQE   45 (53)
T ss_dssp             SCCTTTCSTTTCCCSSSCTTS--SEEEEETTEEEEECSTTCEECT
T ss_pred             ccccccCcccccccccCCCCC--CEeECCCCCeEEECCCCCeECC
Confidence            6778864          4574  5999999999999999999864

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=97.60  E-value=1.9e-05  Score=48.08  Aligned_cols=38  Identities=24%  Similarity=0.597  Sum_probs=31.1

Q ss_pred             CCCCCCCCCeeecCCCceeeeCCCCCCCCCCCCcccccccc
Q psy2857         288 LDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQEKA  328 (332)
Q Consensus       288 ~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~~~c~~~~~  328 (332)
                      ..+.|.  +.|+|+.|+|+|.|++||+...+.+ +|.++++
T Consensus         4 ~ng~C~--~~C~n~~gs~~C~C~~Gy~L~~d~~-tC~dide   41 (51)
T 1kig_L            4 DNGGCD--QFCREERSEVRCSCAHGYVLGDDSK-SCVSTER   41 (51)
T ss_dssp             TTTSSS--SCCCEETTEECCCCCTTEEECTTSS-CEEECSS
T ss_pred             CCCCcC--CEeEcCCCCeEEeCCCCcEECCCCC-ccccCCc
Confidence            345674  4799999999999999999887766 7887766

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=97.59  E-value=3.8e-05  Score=46.68  Aligned_cols=32  Identities=16%  Similarity=0.489  Sum_probs=27.4

Q ss_pred             CeeeecCCceeeecCCCcccCC-CCcccccccc
Q psy2857         254 ATCIDTQGSYSCVCKEHYTGDP-YQACSDIDEC  285 (332)
Q Consensus       254 ~~C~~~~~~~~C~C~~G~~g~~-~~~C~~~d~C  285 (332)
                      +.|+++.++|+|.|++||.+.. ..+|.++|++
T Consensus        10 ~~C~n~~gs~~C~C~~Gy~L~~d~~tC~dide~   42 (51)
T 1kig_L           10 QFCREERSEVRCSCAHGYVLGDDSKSCVSTERF   42 (51)
T ss_dssp             SCCCEETTEECCCCCTTEEECTTSSCEEECSSS
T ss_pred             CEeEcCCCCeEEeCCCCcEECCCCCccccCCcc
Confidence            4799999999999999998754 3679999987

>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D

Probab=97.58  E-value=7.4e-06  Score=50.14  Aligned_cols=40  Identities=20%  Similarity=0.362  Sum_probs=32.4

Q ss_pred             EEEecCCceecccCCcCCCCCCCCCCeeee----CCCCeEeeCCCCCccCCCC
Q psy2857           6 LVRILLGVRAIVDINECQSNPCGVNATCID----TQGSYSCVCKEHYTGDPYQ   54 (332)
Q Consensus         6 ~c~c~~g~~~~~~~~~C~~~~C~~~g~C~~----~~g~~~C~C~~G~~g~~~~   54 (332)
                      .|.|++||.         ++||.++|+|++    ..++|.|.|++||+|..++
T Consensus         4 ~C~C~~g~~---------~~pC~NGGtC~~~~~~~~~~y~C~C~~Gf~G~~Ce   47 (52)
T 3ca7_A            4 TYKCPETFD---------AWYCLNDAHCFAVKIADLPVYSCECAIGFMGQRCE   47 (52)
T ss_dssp             CBCCCHHHH---------HHTSCTTCEEEEEEETTEEEEEEECCTTEESTTSC
T ss_pred             eeECCCCCc---------CCcCCCCCEEecCccCCCCCEEEECCCCCcCCCCc
Confidence            477888887         457888999997    3568999999999997654

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.55  E-value=1.3e-05  Score=72.93  Aligned_cols=62  Identities=31%  Similarity=0.753  Sum_probs=25.4

Q ss_pred             CccCCCCCCCCCeeeecCCceeeecCCCcccCCCCcccccccccCCCCCCCCCCeeecCCCceeeeCCCCCCCCCCC
Q psy2857         243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDA  319 (332)
Q Consensus       243 ~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~C~~~d~C~~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~  319 (332)
                      ++|.. +|.+ +.|++.   ++|.|++||+|..|+    +++|..   +|.++++|++.   +.|.|++||+|..+.
T Consensus       393 ~~C~~-~C~n-G~C~~~---~~C~C~~G~~G~~C~----~~~C~~---~C~~~g~C~~~---~~C~C~~G~~G~~C~  454 (463)
T 2wg3_C          393 SECSR-LCRN-GYCTPT---GKCCCSPGWEGDFCR----TAKCEP---ACRHGGVCVRP---NKCLCKKGYLGPQCE  454 (463)
T ss_dssp             CHHHH-HCCS-EEECTT---SCEEECTTEESTTSC----EECC----------------------------------
T ss_pred             ccccC-CCCC-CccCCC---CeECCCCCcCCCcCC----cCcCCC---CCCCCCEECCC---CEEECCCCcccCCCC
Confidence            45653 5775 789864   389999999998764    577864   89999999875   599999999998543

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=97.45  E-value=3.9e-05  Score=63.95  Aligned_cols=45  Identities=27%  Similarity=0.660  Sum_probs=35.8

Q ss_pred             cccCccCC--CCCCCCCeeeecCCceeeecCCCcccCCCCcccccccc
Q psy2857         240 VDINECQS--NPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDEC  285 (332)
Q Consensus       240 ~~~~~C~~--~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~C~~~d~C  285 (332)
                      .|+|||..  .+|..++.|+|+.++|.|.|++||.|++. .|.|+|+.
T Consensus         3 ~DiDEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~GnG~-~C~d~d~P   49 (285)
T 1gl4_A            3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNGR-QCVAEGSP   49 (285)
T ss_dssp             ----CHHHHGGGSCTTEEEEECSSCEEEEECTTEEECSS-SEEETTCE
T ss_pred             ccchhccCCCCCCCCCCEeEcCCCCeEEEcCCCCCCCCC-cCCCCCCC
Confidence            36789973  78999999999999999999999998865 58888764

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=97.42  E-value=0.00011  Score=45.05  Aligned_cols=33  Identities=30%  Similarity=0.528  Sum_probs=28.0

Q ss_pred             CeeeecCC-ceeeecCCCcccCCC-Cccccccccc
Q psy2857         254 ATCIDTQG-SYSCVCKEHYTGDPY-QACSDIDECK  286 (332)
Q Consensus       254 ~~C~~~~~-~~~C~C~~G~~g~~~-~~C~~~d~C~  286 (332)
                      +.|+++.+ +|+|.|++||.+... .+|.|+|+|.
T Consensus        11 ~~C~n~~ggs~~C~C~~Gy~L~~Dg~tC~d~dec~   45 (53)
T 2bz6_L           11 QYCSDHTGTKRSCRCHEGYSLLADGVSCTPTVEYP   45 (53)
T ss_dssp             SEEEEETTTEEEEECCTTEEECTTSSCEEECSSSC
T ss_pred             CEeEcCCCCCEEeeCCCCCEECCCCCcccCCcccc
Confidence            57999999 799999999987643 6799999984

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=97.40  E-value=8.5e-05  Score=45.45  Aligned_cols=31  Identities=26%  Similarity=0.688  Sum_probs=27.3

Q ss_pred             CCCCCCCCeee--ecCCceeeecCCCcccCCCC
Q psy2857         247 SNPCGVNATCI--DTQGSYSCVCKEHYTGDPYQ  277 (332)
Q Consensus       247 ~~~C~~~~~C~--~~~~~~~C~C~~G~~g~~~~  277 (332)
                      ++||.++++|+  +..++|.|.|++||+|..++
T Consensus        11 ~~pC~nGG~C~~~~~~~~~~C~C~~GytG~~Ce   43 (53)
T 1nql_B           11 DGYCLHDGVCMYIEALDKYACNCVVGYIGERCQ   43 (53)
T ss_dssp             CCEECTTCEEEEETTTTEEEEEECTTEESTTSC
T ss_pred             CCCCCCCeEEeeecCCCCEEEecCCCCcCCCCC
Confidence            47899999998  67789999999999999775

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=97.37  E-value=2.2e-05  Score=71.50  Aligned_cols=73  Identities=29%  Similarity=0.649  Sum_probs=33.8

Q ss_pred             EEecCCceec-ccCCcCCCCCCCCCCeeeeCCCCeEeeCCCCCccCCCCCCCCcccccCCCCCCCCCCceeeCCCCeeee
Q psy2857           7 VRILLGVRAI-VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCL   85 (332)
Q Consensus         7 c~c~~g~~~~-~~~~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~c~~~~~~C~~~~~C~~~~~~~~C~   85 (332)
                      ..|..+|.+. ..+++|.. +|. ||+|++.   +.|.|.+||+|..|+    ++.|..   +|.++++|++.   +.|.
T Consensus       379 ~~C~~~~~g~~c~~~~C~~-~C~-nG~C~~~---~~C~C~~G~~G~~C~----~~~C~~---~C~~~g~C~~~---~~C~  443 (463)
T 2wg3_C          379 EECRATVQPAQTLTSECSR-LCR-NGYCTPT---GKCCCSPGWEGDFCR----TAKCEP---ACRHGGVCVRP---NKCL  443 (463)
T ss_dssp             GGGCCCCCCCCCCCCHHHH-HCC-SEEECTT---SCEEECTTEESTTSC----EECC-----------------------
T ss_pred             ccCCCCCcCCCCccccccC-CCC-CCccCCC---CeECCCCCcCCCcCC----cCcCCC---CCCCCCEECCC---CEEE
Confidence            3577788776 34566654 587 4899864   379999999997653    567752   89999999876   5899


Q ss_pred             CCCCCCCCC
Q psy2857          86 CPKGYSGKP   94 (332)
Q Consensus        86 C~~g~~~~~   94 (332)
                      |.+||.|..
T Consensus       444 C~~G~~G~~  452 (463)
T 2wg3_C          444 CKKGYLGPQ  452 (463)
T ss_dssp             ---------
T ss_pred             CCCCcccCC
Confidence            999999983

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=97.29  E-value=0.00011  Score=44.98  Aligned_cols=38  Identities=24%  Similarity=0.520  Sum_probs=30.9

Q ss_pred             CCCCCCCCeeecCCC-ceeeeCCCCCCCCCCCCccccccccC
Q psy2857         289 DKPCGLRAICENTVP-GFNCLCPKGYSGKPDAKVACEQEKAG  329 (332)
Q Consensus       289 ~~~C~~~~~C~~~~g-~~~C~C~~g~~g~~~~~~~c~~~~~~  329 (332)
                      .+.|.  ..|+|+.+ +|+|.|++||....+.+ +|.++++.
T Consensus         6 nggC~--~~C~n~~ggs~~C~C~~Gy~L~~Dg~-tC~d~dec   44 (53)
T 2bz6_L            6 NGGCE--QYCSDHTGTKRSCRCHEGYSLLADGV-SCTPTVEY   44 (53)
T ss_dssp             GGGCS--SEEEEETTTEEEEECCTTEEECTTSS-CEEECSSS
T ss_pred             CCCcC--CEeEcCCCCCEEeeCCCCCEECCCCC-cccCCccc
Confidence            34564  58999999 79999999999888776 79887763

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=97.27  E-value=0.00011  Score=56.85  Aligned_cols=41  Identities=27%  Similarity=0.787  Sum_probs=34.1

Q ss_pred             CccCCCCCCCCCeeeecCCceeeecCCCcccCCCCccccccccc
Q psy2857         243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECK  286 (332)
Q Consensus       243 ~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~C~~~d~C~  286 (332)
                      ++|...+|.++++|++..++|+|.|++||.|..   |+++++|.
T Consensus       120 ~~c~~~~C~~~g~C~~~~~~~~c~C~~g~~G~~---Ce~~~~c~  160 (162)
T 1g1s_A          120 ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPE---CEYVRDDD  160 (162)
T ss_dssp             CCCCTTGGGGSEEEEECSSSEEEEECTTEESTT---SCEECC--
T ss_pred             CCCcCCCCCCCCEEecCCCCceEeCCCCCcCcc---cccCcccC
Confidence            467778899999999999999999999999984   56777885

>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A

Probab=97.15  E-value=7.1e-05  Score=62.40  Aligned_cols=45  Identities=27%  Similarity=0.677  Sum_probs=34.4

Q ss_pred             ccCCcCC--CCCCCCCCeeeeCCCCeEeeCCCCCccCCCCCCCCcccc
Q psy2857          17 VDINECQ--SNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDEC   62 (332)
Q Consensus        17 ~~~~~C~--~~~C~~~g~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~c   62 (332)
                      .|+|+|.  ..+|..++.|+|+.|+|.|.|++||.|+. ..|.+++..
T Consensus         3 ~DiDEC~~~~~~C~~~a~C~Nt~Gsy~C~C~~Gy~GnG-~~C~d~d~P   49 (285)
T 1gl4_A            3 LAQQTCANNRHQCSVHAECRDYATGFCCRCVANYTGNG-RQCVAEGSP   49 (285)
T ss_dssp             ----CHHHHGGGSCTTEEEEECSSCEEEEECTTEEECS-SSEEETTCE
T ss_pred             ccchhccCCCCCCCCCCEeEcCCCCeEEEcCCCCCCCC-CcCCCCCCC
Confidence            5789997  45699999999999999999999999875 357776654

>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C*

Probab=97.11  E-value=0.00026  Score=43.25  Aligned_cols=30  Identities=27%  Similarity=0.640  Sum_probs=26.0

Q ss_pred             CCCCCCCCeee--cCCCceeeeCCCCCCCCCC
Q psy2857         289 DKPCGLRAICE--NTVPGFNCLCPKGYSGKPD  318 (332)
Q Consensus       289 ~~~C~~~~~C~--~~~g~~~C~C~~g~~g~~~  318 (332)
                      ..+|.++|+|+  +..++|.|.|++||+|..+
T Consensus        11 ~~pC~nGG~C~~~~~~~~~~C~C~~GytG~~C   42 (53)
T 1nql_B           11 DGYCLHDGVCMYIEALDKYACNCVVGYIGERC   42 (53)
T ss_dssp             CCEECTTCEEEEETTTTEEEEEECTTEESTTS
T ss_pred             CCCCCCCeEEeeecCCCCEEEecCCCCcCCCC
Confidence            36899999998  6788999999999999854

>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A

Probab=97.08  E-value=0.00027  Score=48.49  Aligned_cols=70  Identities=23%  Similarity=0.541  Sum_probs=54.8

Q ss_pred             CCCCCCCCCCeeeeC-CCCeEeeCCCCCccCCCCCCCCc--ccccCCCCCCCCCCceeeCC-----CCeeeeCCCCCCC
Q psy2857          22 CQSNPCGVNATCIDT-QGSYSCVCKEHYTGDPYQACSDI--DECKALDKPCGLRAICENTV-----PGFNCLCPKGYSG   92 (332)
Q Consensus        22 C~~~~C~~~g~C~~~-~g~~~C~C~~G~~g~~~~~C~~~--~~c~~~~~~C~~~~~C~~~~-----~~~~C~C~~g~~~   92 (332)
                      |....|+.++.|... .+..+|+|.+||.++. ..|...  ..|.....-|.+++.|....     +...|.|..||.-
T Consensus         7 C~~~~C~~NA~C~r~~~g~e~C~C~~gy~gdg-~~Cv~~~~~sC~~nNGGCd~nA~C~~~~~~~~~~ki~C~C~~g~~~   84 (99)
T 1ob1_C            7 CVKKQCPQNSGCFRHLDEREECKCLLNYKQEG-DKCVENPNPTCNENNGGCDADAKCTEEDSGSNGKKITCECTKPDSY   84 (99)
T ss_dssp             CCSCCCCTTEEEECCTTSCCEEEECTTEEEET-TEEEECSCCCSTTGGGGCCTTEEEECCSCSSSSCCCEEEECSTTCC
T ss_pred             eccCCCCCCCCeEEcCCCCEEEEecCCeecCC-CeEeeCCCCChhhcCCCcCCCceeEecCCcccCCceEeEeCCCCcc
Confidence            555668899999985 6889999999999875 456655  46765445688999998774     5789999998753

>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4

Probab=97.04  E-value=0.00096  Score=46.02  Aligned_cols=71  Identities=21%  Similarity=0.398  Sum_probs=56.8

Q ss_pred             CcCCCCCCCCCCeeeeC-CCCeEeeCCCCCccCCCCCCCCccc-ccCCCCCCCCCCceeeCC-CCeeeeCCCCCC
Q psy2857          20 NECQSNPCGVNATCIDT-QGSYSCVCKEHYTGDPYQACSDIDE-CKALDKPCGLRAICENTV-PGFNCLCPKGYS   91 (332)
Q Consensus        20 ~~C~~~~C~~~g~C~~~-~g~~~C~C~~G~~g~~~~~C~~~~~-c~~~~~~C~~~~~C~~~~-~~~~C~C~~g~~   91 (332)
                      .-|....|+.++.|... .|...|+|..||.++. ..|+.+++ |.....-|..++.|..+. ..-.|.|..+|.
T Consensus        11 h~C~~t~Cp~NA~C~r~~~G~e~CrCl~gY~~dg-~~Cv~~Np~C~~nNGGCd~nAeC~~~~~~ki~C~C~~~~~   84 (105)
T 1n1i_A           11 HKCIDTNVPENAACYRYLDGTEEWRCLLGFKEVG-GKCVPASITCEENNGGCAPEAECTMDDKKEVECKCTKEGS   84 (105)
T ss_dssp             TSCCSSCCCTTEEEEECTTSCEEEEECTTEEECS-SSEEECCCCTTSGGGGSCTTSEEEECTTSCEEEECCSTTC
T ss_pred             cEecCCCCCCCCCeEECCCCCEeEEEECCeeccC-CEEEECCcchhhcCCCcCCCcEeEECCCCEEEeECCCCCC
Confidence            34666668999999994 7888999999999975 56777777 655445699999999885 688999999875

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=97.02  E-value=0.00036  Score=43.69  Aligned_cols=36  Identities=28%  Similarity=0.707  Sum_probs=28.6

Q ss_pred             CCCCCCCCeeecCC-CceeeeCCCCCCCCCCCCccccccc
Q psy2857         289 DKPCGLRAICENTV-PGFNCLCPKGYSGKPDAKVACEQEK  327 (332)
Q Consensus       289 ~~~C~~~~~C~~~~-g~~~C~C~~g~~g~~~~~~~c~~~~  327 (332)
                      .+.|.  ..|+++. ++|.|.|++||....+.+ +|.++.
T Consensus         6 nggC~--~~C~n~~~gs~~C~C~~Gy~L~~D~~-tC~d~~   42 (59)
T 2wph_E            6 NGRCE--QFCKNSADNKVVCSCTEGYRLAENQK-SCEPAV   42 (59)
T ss_dssp             GGGCS--SEEEECSTTCEEEECCTTEEECTTSS-CEEESS
T ss_pred             CCCcC--CEeEeCCCCCEEeeCCCCcEECCCCC-cccCCC
Confidence            34564  5899999 699999999999888766 777654

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=96.79  E-value=0.00054  Score=60.67  Aligned_cols=72  Identities=29%  Similarity=0.749  Sum_probs=24.6

Q ss_pred             CCCC-CeeeecCCceeeecCCCcccCCCCcccc-------------------ccc------------ccCCCCCCCCCCe
Q psy2857         250 CGVN-ATCIDTQGSYSCVCKEHYTGDPYQACSD-------------------IDE------------CKALDKPCGLRAI  297 (332)
Q Consensus       250 C~~~-~~C~~~~~~~~C~C~~G~~g~~~~~C~~-------------------~d~------------C~~~~~~C~~~~~  297 (332)
                      |..+ ..|....+.++|.|+.+++|..|+.|.+                   .++            |.....+|.+++.
T Consensus       299 CnGHas~C~~~~g~~~C~C~~~ttG~~CE~C~pgy~~~P~~~gt~~p~~~g~~~~C~pC~Cn~~g~~CD~~t~~C~ngg~  378 (426)
T 3zyj_B          299 CNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVCDNELLHCQNGGT  378 (426)
T ss_dssp             CSSSCSCEEEETTEEEECCCTTEESSSSCEECTTCCSSCCCCCBCCSSSSCBCCCCCCCCC-------------------
T ss_pred             CCCchhhcCCCCCCceeeCCCCCcCCCccccccccccCcccCCcccccCCCCCCcccCCCCCCCcCccccCcccCCCCCC
Confidence            4433 3688878889999999999988776532                   112            2223346777888


Q ss_pred             eecCCCceeeeCCCCCCCCCCCCcccc
Q psy2857         298 CENTVPGFNCLCPKGYSGKPDAKVACE  324 (332)
Q Consensus       298 C~~~~g~~~C~C~~g~~g~~~~~~~c~  324 (332)
                      |++..   +|.|++||.|..+..-.|.
T Consensus       379 C~~~~---~C~C~~G~~G~~Ce~c~C~  402 (426)
T 3zyj_B          379 CHNNV---RCLCPAAYTGILCEKLRCE  402 (426)
T ss_dssp             ---------------------------
T ss_pred             cCCCC---CCcCCCCCcCCCCcCCCCC
Confidence            87655   8999999999887665555

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=96.79  E-value=0.0013  Score=41.08  Aligned_cols=42  Identities=21%  Similarity=0.537  Sum_probs=31.0

Q ss_pred             CeeeecC-CceeeecCCCcccCCC-CcccccccccCCCCCCCCCCeeecCC
Q psy2857         254 ATCIDTQ-GSYSCVCKEHYTGDPY-QACSDIDECKALDKPCGLRAICENTV  302 (332)
Q Consensus       254 ~~C~~~~-~~~~C~C~~G~~g~~~-~~C~~~d~C~~~~~~C~~~~~C~~~~  302 (332)
                      ..|++++ ++|+|.|++||.+... .+|.|+++     .+|.  ..|+|..
T Consensus        11 ~~C~n~~~gs~~C~C~~Gy~L~~D~~tC~d~~~-----~pC~--~~c~n~~   54 (59)
T 2wph_E           11 QFCKNSADNKVVCSCTEGYRLAENQKSCEPAVP-----FPCG--RVSVSQT   54 (59)
T ss_dssp             SEEEECSTTCEEEECCTTEEECTTSSCEEESSS-----SCTT--CCCSCCC
T ss_pred             CEeEeCCCCCEEeeCCCCcEECCCCCcccCCCC-----CCCC--Ccccccc
Confidence            5799999 6999999999987643 56887653     4664  4566643

>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=96.76  E-value=0.0011  Score=58.82  Aligned_cols=47  Identities=23%  Similarity=0.475  Sum_probs=0.0

Q ss_pred             CCCCCCCeeeecCCceeeecCCCcccCCCCcccccccccCCCCCCCCCCeeecCCCceeeeCC
Q psy2857         248 NPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCP  310 (332)
Q Consensus       248 ~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~C~~~d~C~~~~~~C~~~~~C~~~~g~~~C~C~  310 (332)
                      .+|.++++|++..   +|+|++||+|..|+.           ..|.++|.|....|  .|.=+
T Consensus       371 ~~C~ngg~C~~~~---~C~C~~G~~G~~Ce~-----------c~C~~~g~C~~~~G--qc~~~  417 (426)
T 3zyj_B          371 LHCQNGGTCHNNV---RCLCPAAYTGILCEK-----------LRCEEAGSCGSDSG--QGAPP  417 (426)
T ss_dssp             ---------------------------------------------------------------
T ss_pred             ccCCCCCCcCCCC---CCcCCCCCcCCCCcC-----------CCCCCCCcccCCCC--ccCCC
Confidence            5788899998766   899999999987652           25666677876665  45433

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=96.73  E-value=0.00043  Score=54.00  Aligned_cols=53  Identities=30%  Similarity=0.698  Sum_probs=40.0

Q ss_pred             CCcccCCCCcccccccccCCCCC---CCCCCeeecCCCceeeeCCCCCCCCCCCCcccccc
Q psy2857         269 EHYTGDPYQACSDIDECKALDKP---CGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQE  326 (332)
Q Consensus       269 ~G~~g~~~~~C~~~d~C~~~~~~---C~~~~~C~~~~g~~~C~C~~g~~g~~~~~~~c~~~  326 (332)
                      .||.+..  .+.++++|......   |.  ..|+|+.++|.|.|++||++..+.+ +|.++
T Consensus       113 ~Gf~~~~--~~~di~eC~~~~~~~~~C~--~~C~n~~g~~~C~C~~Gy~l~~d~~-~C~~~  168 (170)
T 1szb_A          113 TGFEAFY--AAEDIDECQVAPGEAPTCD--HHCHNHLGGFYCSCRAGYVLHRNKR-TCSEQ  168 (170)
T ss_dssp             CEEEEEE--EEEECCTTCCCTTSCCSSS--SEEEEETTEEEEECCTTEEECTTSS-CEEEC
T ss_pred             cCceeee--eccccCcccCCCCCCCccC--CccccCCCCEEEeCCCCcEECCCCC-ccccc
Confidence            5676643  35788999865443   86  3899999999999999999877654 67654

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=96.61  E-value=0.001  Score=41.38  Aligned_cols=29  Identities=28%  Similarity=0.610  Sum_probs=24.7

Q ss_pred             CCCCCCeeee----cCCceeeecCCCcccCCCC
Q psy2857         249 PCGVNATCID----TQGSYSCVCKEHYTGDPYQ  277 (332)
Q Consensus       249 ~C~~~~~C~~----~~~~~~C~C~~G~~g~~~~  277 (332)
                      +|.++++|+.    ..++|.|.|++||+|..++
T Consensus        15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~Ce   47 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRCE   47 (58)
T ss_dssp             TSCSSCEEEEEEETTEEEEEEEECTTEESSSSC
T ss_pred             cCCCCCEEeCCccCCCCCEEeECCCCCccCCCc
Confidence            8999999983    4457999999999999775

>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A

Probab=96.59  E-value=0.00068  Score=52.31  Aligned_cols=42  Identities=26%  Similarity=0.763  Sum_probs=34.0

Q ss_pred             CCcCCCCCCCCCCeeeeCCCCeEeeCCCCCccCCCCCCCCccccc
Q psy2857          19 INECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQACSDIDECK   63 (332)
Q Consensus        19 ~~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~g~~~~~C~~~~~c~   63 (332)
                      .++|...+|..+++|+++.++|.|+|++||.|..   |+.+++|.
T Consensus       119 ~~~c~~~~C~~~g~C~~~~~~~~c~C~~g~~G~~---Ce~~~~c~  160 (162)
T 1g1s_A          119 TASCQDMSCSKQGECLETIGNYTCSCYPGFYGPE---CEYVRDDD  160 (162)
T ss_dssp             ECCCCTTGGGGSEEEEECSSSEEEEECTTEESTT---SCEECC--
T ss_pred             eCCCcCCCCCCCCEEecCCCCceEeCCCCCcCcc---cccCcccC
Confidence            4578888899899999999999999999999964   55566664

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=96.38  E-value=0.0047  Score=45.02  Aligned_cols=29  Identities=21%  Similarity=0.639  Sum_probs=24.8

Q ss_pred             CCCCCCeeeecC--Cce-eeecCCCcccCCCC
Q psy2857         249 PCGVNATCIDTQ--GSY-SCVCKEHYTGDPYQ  277 (332)
Q Consensus       249 ~C~~~~~C~~~~--~~~-~C~C~~G~~g~~~~  277 (332)
                      ||.++++|++..  .+| +|.|++||+|..++
T Consensus         2 pC~nggtC~~~~~~~~~~~C~Cp~g~~G~~Ce   33 (122)
T 2fd6_A            2 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCE   33 (122)
T ss_dssp             CCCSSCEEEECTTTTTCEEEECCTTEESTTSC
T ss_pred             CCCCcCCcCCCcccCCCCCccCCCCCCCcccc
Confidence            688999999874  556 99999999999776

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=96.17  E-value=0.003  Score=58.54  Aligned_cols=36  Identities=28%  Similarity=0.749  Sum_probs=33.4

Q ss_pred             cCccCCCCCCCCCeeee-cCCceeeecC-CCcccCCCC
Q psy2857         242 INECQSNPCGVNATCID-TQGSYSCVCK-EHYTGDPYQ  277 (332)
Q Consensus       242 ~~~C~~~~C~~~~~C~~-~~~~~~C~C~-~G~~g~~~~  277 (332)
                      +|+|.++||.++++|++ ..++|.|.|+ +||+|..|+
T Consensus         2 ~d~C~~~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce   39 (553)
T 1q4g_A            2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCT   39 (553)
T ss_dssp             CCGGGGCCCCTTCEEEEETTTEEEEECTTSSEETTTTC
T ss_pred             CCcCCCCCCCCCCCcCCCCCCceEeeCCCCCcCCCCCC
Confidence            47899999999999999 8999999999 999999876

>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...

Probab=95.95  E-value=0.0037  Score=57.88  Aligned_cols=36  Identities=28%  Similarity=0.749  Sum_probs=33.3

Q ss_pred             CCcCCCCCCCCCCeeee-CCCCeEeeCC-CCCccCCCC
Q psy2857          19 INECQSNPCGVNATCID-TQGSYSCVCK-EHYTGDPYQ   54 (332)
Q Consensus        19 ~~~C~~~~C~~~g~C~~-~~g~~~C~C~-~G~~g~~~~   54 (332)
                      +|+|.++||.++|+|++ ..++|.|.|. +||+|..|+
T Consensus         2 ~d~C~~~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce   39 (553)
T 1q4g_A            2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCT   39 (553)
T ss_dssp             CCGGGGCCCCTTCEEEEETTTEEEEECTTSSEETTTTC
T ss_pred             CCcCCCCCCCCCCCcCCCCCCceEeeCCCCCcCCCCCC
Confidence            58899999999999999 8899999999 999998775

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=95.89  E-value=0.0051  Score=57.14  Aligned_cols=36  Identities=31%  Similarity=0.768  Sum_probs=32.2

Q ss_pred             cCccCCCCCCCCCeeee-cCCceeeecC-CCcccCCCC
Q psy2857         242 INECQSNPCGVNATCID-TQGSYSCVCK-EHYTGDPYQ  277 (332)
Q Consensus       242 ~~~C~~~~C~~~~~C~~-~~~~~~C~C~-~G~~g~~~~  277 (332)
                      +++|.++||.++++|++ ..++|.|.|+ +||+|..|+
T Consensus         1 vd~C~s~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce   38 (587)
T 3nt1_A            1 ANPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT   38 (587)
T ss_dssp             CCTTTTCCCCTTCEEEEEETTEEEEECTTSSEETTTTC
T ss_pred             CCCCCCCCCCCCCEeeCCCCCCeEEecCCCCccCCCCC
Confidence            46899999999999995 5589999999 999999886

>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster}

Probab=95.88  E-value=0.0031  Score=39.18  Aligned_cols=28  Identities=29%  Similarity=0.631  Sum_probs=23.2

Q ss_pred             CCCCCCeeec----CCCceeeeCCCCCCCCCC
Q psy2857         291 PCGLRAICEN----TVPGFNCLCPKGYSGKPD  318 (332)
Q Consensus       291 ~C~~~~~C~~----~~g~~~C~C~~g~~g~~~  318 (332)
                      +|.++|+|+.    ..++|.|.|++||+|..+
T Consensus        15 pC~NGGtC~~~~~~~~~~~~C~C~~Gf~G~~C   46 (58)
T 3ltf_D           15 YCLNDAHCFAVKIADLPVYSCECAIGFMGQRC   46 (58)
T ss_dssp             TSCSSCEEEEEEETTEEEEEEEECTTEESSSS
T ss_pred             cCCCCCEEeCCccCCCCCEEeECCCCCccCCC
Confidence            7999999983    445789999999999844

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=95.70  E-value=0.0045  Score=48.05  Aligned_cols=39  Identities=36%  Similarity=0.852  Sum_probs=31.6

Q ss_pred             CCceec---ccCCcCCCCC-----CCCCCeeeeCCCCeEeeCCCCCccC
Q psy2857          11 LGVRAI---VDINECQSNP-----CGVNATCIDTQGSYSCVCKEHYTGD   51 (332)
Q Consensus        11 ~g~~~~---~~~~~C~~~~-----C~~~g~C~~~~g~~~C~C~~G~~g~   51 (332)
                      .||.+.   .++++|...+     |.  ..|+++.++|.|.|.+||+..
T Consensus       113 ~Gf~~~~~~~di~eC~~~~~~~~~C~--~~C~n~~g~~~C~C~~Gy~l~  159 (170)
T 1szb_A          113 TGFEAFYAAEDIDECQVAPGEAPTCD--HHCHNHLGGFYCSCRAGYVLH  159 (170)
T ss_dssp             CEEEEEEEEEECCTTCCCTTSCCSSS--SEEEEETTEEEEECCTTEEEC
T ss_pred             cCceeeeeccccCcccCCCCCCCccC--CccccCCCCEEEeCCCCcEEC
Confidence            566666   6789998765     65  379999999999999999854

>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ...

Probab=95.42  E-value=0.0086  Score=55.64  Aligned_cols=36  Identities=31%  Similarity=0.768  Sum_probs=32.0

Q ss_pred             CCcCCCCCCCCCCeeee-CCCCeEeeCC-CCCccCCCC
Q psy2857          19 INECQSNPCGVNATCID-TQGSYSCVCK-EHYTGDPYQ   54 (332)
Q Consensus        19 ~~~C~~~~C~~~g~C~~-~~g~~~C~C~-~G~~g~~~~   54 (332)
                      +++|.++||.++|+|++ ..++|.|.|. +||+|..|+
T Consensus         1 vd~C~s~PC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce   38 (587)
T 3nt1_A            1 ANPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT   38 (587)
T ss_dssp             CCTTTTCCCCTTCEEEEEETTEEEEECTTSSEETTTTC
T ss_pred             CCCCCCCCCCCCCEeeCCCCCCeEEecCCCCccCCCCC
Confidence            47899999999999996 4589999999 999998775

>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A

Probab=95.17  E-value=0.025  Score=41.11  Aligned_cols=55  Identities=18%  Similarity=0.399  Sum_probs=37.6

Q ss_pred             CCCCCCeeeeCC--CCe-EeeCCCCCccCCCCCCCCcccccCCCCCCCCCCceeeCCCCeeeeCCCCCCCC
Q psy2857          26 PCGVNATCIDTQ--GSY-SCVCKEHYTGDPYQACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGK   93 (332)
Q Consensus        26 ~C~~~g~C~~~~--g~~-~C~C~~G~~g~~~~~C~~~~~c~~~~~~C~~~~~C~~~~~~~~C~C~~g~~~~   93 (332)
                      ||.++|+|++..  .+| .|.|++||+|..++.  +++      .+|..     .....|++.+..++.|.
T Consensus         2 pC~nggtC~~~~~~~~~~~C~Cp~g~~G~~Ce~--~~~------~~C~~-----g~G~~YrG~~~~t~sG~   59 (122)
T 2fd6_A            2 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCEI--DKS------KTCYE-----GNGHFYRGKASTDTMGR   59 (122)
T ss_dssp             CCCSSCEEEECTTTTTCEEEECCTTEESTTSCE--ESS------CCSBC-----SSCTTCCSCCCBBTTSC
T ss_pred             CCCCcCCcCCCcccCCCCCccCCCCCCCccccc--cCc------CCCcc-----cccccceeeccccccCC
Confidence            688899999984  555 999999999976642  111      23321     12335788888777776

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=94.97  E-value=0.011  Score=44.96  Aligned_cols=35  Identities=23%  Similarity=0.775  Sum_probs=31.1

Q ss_pred             CccCCCCCCCCCeeeecCCceeeecCCCcccCCCC
Q psy2857         243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQ  277 (332)
Q Consensus       243 ~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~  277 (332)
                      ++|.+.||.+++.|.+...+|.|.|.+||+|+.|+
T Consensus       120 ~~~~~~pc~~~g~C~~~~~~~~c~C~~g~~g~~Ce  154 (157)
T 1g1t_A          120 AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCE  154 (157)
T ss_dssp             CCCCTTGGGGSEEEEEETTEEEEEECTTEESTTSC
T ss_pred             CCCCCCCCCCCCEeecCCCCeeEECCCCccCcccc
Confidence            45667889889999999999999999999999775

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=94.85  E-value=0.018  Score=43.97  Aligned_cols=52  Identities=33%  Similarity=0.764  Sum_probs=37.2

Q ss_pred             CCcccCCCCcccccccccCC-CCCCCCCCeeecCCCceeeeCCCCCCCCCCCCccccc
Q psy2857         269 EHYTGDPYQACSDIDECKAL-DKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQ  325 (332)
Q Consensus       269 ~G~~g~~~~~C~~~d~C~~~-~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~~~c~~  325 (332)
                      .||....  .+.++|+|... ..+|.  +.|.+..++|.|.|++||++..+++ .|..
T Consensus       106 ~GF~~~y--~~~d~~eC~~~~~~~C~--~~C~n~~g~~~C~C~~Gy~l~~~~~-~C~~  158 (159)
T 1nzi_A          106 TGFAAYY--VATDINECTDFVDVPCS--HFCNNFIGGYFCSCPPEYFLHDDMK-NCGV  158 (159)
T ss_dssp             CEEEEEE--EEEECCTTTC-CCCCSS--SEEEEETTEEEEECCTTCEECTTSS-CEEC
T ss_pred             ccceeee--ecccCcccCCCCCCCCC--CcccCcCCCEEEecCCCcEECCCCC-cccc
Confidence            3555432  24678899753 24574  5899999999999999999887665 5753

>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria vaccine, surface antigen; 1.80A {Plasmodium cynomolgi} SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A

Probab=94.42  E-value=0.082  Score=35.47  Aligned_cols=69  Identities=23%  Similarity=0.420  Sum_probs=53.0

Q ss_pred             ccCCCCCCCCCeeeecC-CceeeecCCCcccCCCCcccccc--cccCCCCCCCCCCeeecCC-CceeeeCCCCC
Q psy2857         244 ECQSNPCGVNATCIDTQ-GSYSCVCKEHYTGDPYQACSDID--ECKALDKPCGLRAICENTV-PGFNCLCPKGY  313 (332)
Q Consensus       244 ~C~~~~C~~~~~C~~~~-~~~~C~C~~G~~g~~~~~C~~~d--~C~~~~~~C~~~~~C~~~~-g~~~C~C~~g~  313 (332)
                      .|....|..++.|+... +.-.|+|..+|.-+.. .|...+  .|....+.|..++.|.... ..-.|.|...+
T Consensus         6 ~C~~tkcp~NA~Cyr~~dg~EecRCllnykk~~~-kCV~~~~~~C~~NNGGCd~nA~C~~~~~~kIvC~C~~~~   78 (95)
T 1b9w_A            6 RCIDTNVPENAACYRYLDGTEEWRCLLYFKEDAG-KCVPAPNMTCKDKNGGCAPEAECKMNDKNEIVCKCTKEG   78 (95)
T ss_dssp             SCSSCCCCTTEEEEECTTSCEEEEECTTEEEETT-EEEECTTCCTTTGGGGSCTTSEEEECTTSCEEEECCSTT
T ss_pred             ccccCCCCCCcCeEEEcCCCEEEEEECCeEecCC-EEEcCCCCCccccCCCcCCCcceeecCCCcEEEECCCCC
Confidence            46666788899999865 5678999999987543 355443  6877778899999998777 56789998764

>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*

Probab=94.14  E-value=0.06  Score=40.31  Aligned_cols=29  Identities=21%  Similarity=0.592  Sum_probs=24.5

Q ss_pred             CCCCCCeeeec--CCce-eeecCCCcccCCCC
Q psy2857         249 PCGVNATCIDT--QGSY-SCVCKEHYTGDPYQ  277 (332)
Q Consensus       249 ~C~~~~~C~~~--~~~~-~C~C~~G~~g~~~~  277 (332)
                      ||.++++|+..  ...| +|.|++||.|..++
T Consensus        14 pC~NGGtC~~~~~~s~~~~C~Cp~g~~G~~Ce   45 (145)
T 2i9a_A           14 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCE   45 (145)
T ss_dssp             CCCTTCEEEECSSSTTCEEEECCTTEESTTSC
T ss_pred             CCCCCCCcCCCccccCCccccCCCCCCCCcee
Confidence            79999999876  2455 89999999999776

>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A

Probab=93.66  E-value=0.02  Score=43.56  Aligned_cols=36  Identities=22%  Similarity=0.748  Sum_probs=31.3

Q ss_pred             CCcCCCCCCCCCCeeeeCCCCeEeeCCCCCccCCCC
Q psy2857          19 INECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQ   54 (332)
Q Consensus        19 ~~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~g~~~~   54 (332)
                      ..+|.+.||..++.|.+....|.|.|.+||+|+.|+
T Consensus       119 ~~~~~~~pc~~~g~C~~~~~~~~c~C~~g~~g~~Ce  154 (157)
T 1g1t_A          119 TAACTNTSCSGHGECVETINNYTCKCDPGFSGLKCE  154 (157)
T ss_dssp             ECCCCTTGGGGSEEEEEETTEEEEEECTTEESTTSC
T ss_pred             cCCCCCCCCCCCCEeecCCCCeeEECCCCccCcccc
Confidence            456777889888999999999999999999998664

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=93.22  E-value=0.052  Score=35.62  Aligned_cols=34  Identities=24%  Similarity=0.630  Sum_probs=24.9

Q ss_pred             CccC---CCCCCCCCeee--ecCCceeeecCCCcccCCCC
Q psy2857         243 NECQ---SNPCGVNATCI--DTQGSYSCVCKEHYTGDPYQ  277 (332)
Q Consensus       243 ~~C~---~~~C~~~~~C~--~~~~~~~C~C~~G~~g~~~~  277 (332)
                      +.|.   .+.|.++ +|+  ...+.+.|.|++||+|..|+
T Consensus        38 ~pC~~~~~~yClnG-~C~~i~~~~~~~C~C~~GYtG~RCE   76 (79)
T 1xdt_R           38 DPCLRKYKDFCIHG-ECKYVKELRAPSCICHPGYHGERCH   76 (79)
T ss_dssp             -CTTTTTTTCCSSE-EECCBGGGTBCCEEECTTEESTTCC
T ss_pred             CCCCccccCcCCCC-EeeeecCCCCeEEEcCCCccccccc
Confidence            4565   4678765 895  33467899999999999775

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=93.17  E-value=0.07  Score=31.78  Aligned_cols=29  Identities=31%  Similarity=0.629  Sum_probs=22.8

Q ss_pred             CCCCCCCeee--ecCCceeeecCCCcccCCCC
Q psy2857         248 NPCGVNATCI--DTQGSYSCVCKEHYTGDPYQ  277 (332)
Q Consensus       248 ~~C~~~~~C~--~~~~~~~C~C~~G~~g~~~~  277 (332)
                      ..|.+ |+|.  ...+.+.|.|++||+|..++
T Consensus        14 ~yC~n-G~C~~~~~~~~~~C~C~~gy~G~RCe   44 (50)
T 1iox_A           14 HYCIK-GRCRFVVAEQTPSCVCDEGYIGARCE   44 (50)
T ss_dssp             TSCTT-CCEEEETTTTEEEECCCTTEETTTTC
T ss_pred             CcccC-CEEEeEcCCCCeEEECCCCcccCCCC
Confidence            45666 7886  45567899999999999875

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=92.47  E-value=0.077  Score=44.73  Aligned_cols=45  Identities=31%  Similarity=0.706  Sum_probs=32.9

Q ss_pred             cCccCCC-CCCCCCeeeecCCceeeecCCCcccCC-CCccccccccc
Q psy2857         242 INECQSN-PCGVNATCIDTQGSYSCVCKEHYTGDP-YQACSDIDECK  286 (332)
Q Consensus       242 ~~~C~~~-~C~~~~~C~~~~~~~~C~C~~G~~g~~-~~~C~~~d~C~  286 (332)
                      .|||... .-...+.|.++.++|+|.|.+||.+.. ...|...++|.
T Consensus         2 ~~eC~~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~d~~sC~p~~~c~   48 (283)
T 3f1s_B            2 KNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQCA   48 (283)
T ss_dssp             -CCCCSSCSSSCSSBCCCCTTSCCCBCCTTEEECTTSSCEEECSTTC
T ss_pred             CCccCCCCCCCCCCEeeCCCCCeEecCCCCcccCCCCCccccccccc
Confidence            4677654 333457899999999999999998764 35677777764

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=92.36  E-value=0.11  Score=30.95  Aligned_cols=29  Identities=28%  Similarity=0.547  Sum_probs=22.5

Q ss_pred             CCCCCCCeeeec--CCceeeecCCCcccCCCC
Q psy2857         248 NPCGVNATCIDT--QGSYSCVCKEHYTGDPYQ  277 (332)
Q Consensus       248 ~~C~~~~~C~~~--~~~~~C~C~~G~~g~~~~  277 (332)
                      ..|.++ +|...  .+.+.|.|++||+|..++
T Consensus        14 ~yC~nG-~C~~~~~~~~~~C~C~~gy~G~RCe   44 (50)
T 3e50_C           14 QFCFHG-TCRFLVQEDKPACVCHSGYVGARCE   44 (50)
T ss_pred             CcccCC-EEeeccCCCCeEEECCCCCcccCCC
Confidence            456665 89753  467999999999999765

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=92.16  E-value=0.22  Score=29.59  Aligned_cols=29  Identities=24%  Similarity=0.618  Sum_probs=22.7

Q ss_pred             CCCCCCCeee--ecCCceeeecCCCcccCCCC
Q psy2857         248 NPCGVNATCI--DTQGSYSCVCKEHYTGDPYQ  277 (332)
Q Consensus       248 ~~C~~~~~C~--~~~~~~~C~C~~G~~g~~~~  277 (332)
                      +-|.+ ++|.  ...+.+.|.|++||+|..++
T Consensus        18 ~yC~n-G~C~~i~~~~~~~C~C~~gy~G~RCe   48 (50)
T 2rnl_A           18 NFCIH-GECKYIEHLEAVTCKCQQEYFGERCG   48 (50)
T ss_dssp             GTCSS-SEEEEETTTTEEEEECCSSCCSSSCC
T ss_pred             CcCCC-CEEEEecCCCCeeEECCCCccccccc
Confidence            55765 5997  45567899999999999765

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=91.98  E-value=0.19  Score=38.18  Aligned_cols=42  Identities=29%  Similarity=0.624  Sum_probs=31.8

Q ss_pred             eecCCCCCCC--CCCCCCCceecCCCceEeeCCCCCccCCCCcccc
Q psy2857         139 CVDVDECQLG--DPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCK  182 (332)
Q Consensus       139 c~~~~~C~~~--~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~~c~  182 (332)
                      +.++++|...  ..|.  ..|.+..++|.|.|.+||.+......|.
T Consensus       114 ~~d~~eC~~~~~~~C~--~~C~n~~g~~~C~C~~Gy~l~~~~~~C~  157 (159)
T 1nzi_A          114 ATDINECTDFVDVPCS--HFCNNFIGGYFCSCPPEYFLHDDMKNCG  157 (159)
T ss_dssp             EEECCTTTC-CCCCSS--SEEEEETTEEEEECCTTCEECTTSSCEE
T ss_pred             cccCcccCCCCCCCCC--CcccCcCCCEEEecCCCcEECCCCCccc
Confidence            4578889732  3453  5799999999999999999876666554

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=91.46  E-value=0.15  Score=45.41  Aligned_cols=36  Identities=22%  Similarity=0.697  Sum_probs=32.3

Q ss_pred             cCccCCCCCCCCCeeeecCCceeeecCC-CcccCCCC
Q psy2857         242 INECQSNPCGVNATCIDTQGSYSCVCKE-HYTGDPYQ  277 (332)
Q Consensus       242 ~~~C~~~~C~~~~~C~~~~~~~~C~C~~-G~~g~~~~  277 (332)
                      .+.|.+.||.++++|++..++|.|.|+. ||.|..|+
T Consensus       185 ~~~C~~~pC~n~g~C~~~~~~~~C~C~~~~~~G~~C~  221 (410)
T 3asi_A          185 STTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCN  221 (410)
T ss_dssp             SSCCCTTSSSTTCEEEECSSSEEEECTTTSEESTTSC
T ss_pred             CCCcccccCCCCCEecCCCCCceEeccCCcccCCCCC
Confidence            4678889999999999999999999996 99998764

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=91.10  E-value=0.091  Score=45.72  Aligned_cols=39  Identities=28%  Similarity=0.866  Sum_probs=22.2

Q ss_pred             CccCC-CCCCCCCeeeecCCceeeecCCCcccCCC-Ccccccc
Q psy2857         243 NECQS-NPCGVNATCIDTQGSYSCVCKEHYTGDPY-QACSDID  283 (332)
Q Consensus       243 ~~C~~-~~C~~~~~C~~~~~~~~C~C~~G~~g~~~-~~C~~~d  283 (332)
                      |||.. ..|  ...|.++.++|+|.|++||.+... .+|..++
T Consensus         2 ~ec~~~~~C--~~~C~n~~g~~~C~C~~g~~l~~d~~~C~~~~   42 (349)
T 3v64_C            2 NECAEEGYC--SQGCTNSEGAFQCWCEAGYELRPDRRSCKALG   42 (349)
T ss_dssp             -------CC--SSEECCC---CCEECCTTEEECTTSSCEEESS
T ss_pred             cccCCCCCC--cCeeecCCCCeEEECCCCccCCCCCCcccccc
Confidence            56652 334  358999999999999999987643 4565544

>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A

Probab=90.80  E-value=0.24  Score=29.38  Aligned_cols=29  Identities=24%  Similarity=0.455  Sum_probs=22.5

Q ss_pred             CCCCCCCeeecC--CCceeeeCCCCCCCCCCC
Q psy2857         290 KPCGLRAICENT--VPGFNCLCPKGYSGKPDA  319 (332)
Q Consensus       290 ~~C~~~~~C~~~--~g~~~C~C~~g~~g~~~~  319 (332)
                      +.|.++ +|...  ...+.|.|++||+|..+.
T Consensus        14 ~yC~nG-~C~~~~~~~~~~C~C~~gy~G~RCe   44 (50)
T 3e50_C           14 QFCFHG-TCRFLVQEDKPACVCHSGYVGARCE   44 (50)
T ss_pred             CcccCC-EEeeccCCCCeEEECCCCCcccCCC
Confidence            578866 99753  467899999999998543

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=90.80  E-value=0.19  Score=44.78  Aligned_cols=36  Identities=22%  Similarity=0.697  Sum_probs=31.6

Q ss_pred             CCcCCCCCCCCCCeeeeCCCCeEeeCCC-CCccCCCC
Q psy2857          19 INECQSNPCGVNATCIDTQGSYSCVCKE-HYTGDPYQ   54 (332)
Q Consensus        19 ~~~C~~~~C~~~g~C~~~~g~~~C~C~~-G~~g~~~~   54 (332)
                      .++|...||.++|+|+....+|.|.|.. ||.|..|+
T Consensus       185 ~~~C~~~pC~n~g~C~~~~~~~~C~C~~~~~~G~~C~  221 (410)
T 3asi_A          185 STTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCN  221 (410)
T ss_dssp             SSCCCTTSSSTTCEEEECSSSEEEECTTTSEESTTSC
T ss_pred             CCCcccccCCCCCEecCCCCCceEeccCCcccCCCCC
Confidence            3678889999999999999999999996 99997653

>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A

Probab=90.66  E-value=0.13  Score=30.53  Aligned_cols=29  Identities=31%  Similarity=0.611  Sum_probs=22.1

Q ss_pred             CCCCCCCeeee--CCCCeEeeCCCCCccCCCC
Q psy2857          25 NPCGVNATCID--TQGSYSCVCKEHYTGDPYQ   54 (332)
Q Consensus        25 ~~C~~~g~C~~--~~g~~~C~C~~G~~g~~~~   54 (332)
                      .-|.+ |+|+-  ..+.+.|.|++||+|..++
T Consensus        14 ~yC~n-G~C~~~~~~~~~~C~C~~gy~G~RCe   44 (50)
T 1iox_A           14 HYCIK-GRCRFVVAEQTPSCVCDEGYIGARCE   44 (50)
T ss_dssp             TSCTT-CCEEEETTTTEEEECCCTTEETTTTC
T ss_pred             CcccC-CEEEeEcCCCCeEEECCCCcccCCCC
Confidence            34765 89973  3567899999999997664

>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=90.63  E-value=0.2  Score=29.75  Aligned_cols=35  Identities=26%  Similarity=0.628  Sum_probs=25.3

Q ss_pred             CCcCCC---CCCCCCCeeee--CCCCeEeeCCCCCccCCCC
Q psy2857          19 INECQS---NPCGVNATCID--TQGSYSCVCKEHYTGDPYQ   54 (332)
Q Consensus        19 ~~~C~~---~~C~~~g~C~~--~~g~~~C~C~~G~~g~~~~   54 (332)
                      .++|..   .-|. ||+|+-  ..+.+.|.|.+||+|..++
T Consensus         9 ~~~C~~~~~~yC~-nG~C~~i~~~~~~~C~C~~gy~G~RCe   48 (50)
T 2rnl_A            9 KNPCNAEFQNFCI-HGECKYIEHLEAVTCKCQQEYFGERCG   48 (50)
T ss_dssp             CCTTTTTGGGTCS-SSEEEEETTTTEEEEECCSSCCSSSCC
T ss_pred             CcccCchhhCcCC-CCEEEEecCCCCeeEECCCCccccccc
Confidence            356653   3476 579983  3567899999999997653

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=90.62  E-value=0.14  Score=39.59  Aligned_cols=30  Identities=23%  Similarity=0.713  Sum_probs=24.9

Q ss_pred             ccCCCCCCCCCeeeecCCceeeecCCCcccCCCC
Q psy2857         244 ECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQ  277 (332)
Q Consensus       244 ~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~  277 (332)
                      .|. .+|.++|.|+...   +|.|++||+|..|+
T Consensus       150 ~C~-~~C~ngG~Cv~P~---~C~C~~Gw~G~~C~  179 (188)
T 2ygo_A          150 ECP-GGCRNGGFCNERR---ICECPDGFHGPHCE  179 (188)
T ss_dssp             CCT-TCCCTTCEECTTS---CEECCTTCBTTTTC
T ss_pred             ccC-CCCCCCCEeCCCC---cccCcCCCCCCCCc
Confidence            454 6899999998744   89999999999775

>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1

Probab=90.54  E-value=0.11  Score=34.05  Aligned_cols=35  Identities=23%  Similarity=0.560  Sum_probs=24.9

Q ss_pred             CCcCC---CCCCCCCCeeeeC--CCCeEeeCCCCCccCCCC
Q psy2857          19 INECQ---SNPCGVNATCIDT--QGSYSCVCKEHYTGDPYQ   54 (332)
Q Consensus        19 ~~~C~---~~~C~~~g~C~~~--~g~~~C~C~~G~~g~~~~   54 (332)
                      .++|.   ...|.+ |+|+..  .+.+.|.|.+||+|..++
T Consensus        37 ~~pC~~~~~~yCln-G~C~~i~~~~~~~C~C~~GYtG~RCE   76 (79)
T 1xdt_R           37 RDPCLRKYKDFCIH-GECKYVKELRAPSCICHPGYHGERCH   76 (79)
T ss_dssp             --CTTTTTTTCCSS-EEECCBGGGTBCCEEECTTEESTTCC
T ss_pred             CCCCCccccCcCCC-CEeeeecCCCCeEEEcCCCccccccc
Confidence            46777   566875 699543  467899999999997653

>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*

Probab=88.92  E-value=0.3  Score=37.83  Aligned_cols=29  Identities=17%  Similarity=0.544  Sum_probs=23.3

Q ss_pred             CCCCCCCCCeeeeCCCCeEeeCCCCCccCCCC
Q psy2857          23 QSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQ   54 (332)
Q Consensus        23 ~~~~C~~~g~C~~~~g~~~C~C~~G~~g~~~~   54 (332)
                      ...+|.++|.|+.-.   .|.|++||.|..|+
T Consensus       151 C~~~C~ngG~Cv~P~---~C~C~~Gw~G~~C~  179 (188)
T 2ygo_A          151 CPGGCRNGGFCNERR---ICECPDGFHGPHCE  179 (188)
T ss_dssp             CTTCCCTTCEECTTS---CEECCTTCBTTTTC
T ss_pred             cCCCCCCCCEeCCCC---cccCcCCCCCCCCc
Confidence            334688899998765   79999999998764

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=88.38  E-value=0.18  Score=42.45  Aligned_cols=45  Identities=31%  Similarity=0.707  Sum_probs=31.1

Q ss_pred             cCCcCCCC-CCCCCCeeeeCCCCeEeeCCCCCccCC-CCCCCCcccc
Q psy2857          18 DINECQSN-PCGVNATCIDTQGSYSCVCKEHYTGDP-YQACSDIDEC   62 (332)
Q Consensus        18 ~~~~C~~~-~C~~~g~C~~~~g~~~C~C~~G~~g~~-~~~C~~~~~c   62 (332)
                      ++|+|... +-+....|.++.++|.|.|..||.... ..+|.+.++|
T Consensus         1 ~~~eC~~~~~~~C~~~C~~~~~~~~C~C~~G~~l~~d~~sC~p~~~c   47 (283)
T 3f1s_B            1 AKNECHPERTDGCQHFCLPGQESYTCSCAQGYRLGEDHKQCVPHDQC   47 (283)
T ss_dssp             --CCCCSSCSSSCSSBCCCCTTSCCCBCCTTEEECTTSSCEEECSTT
T ss_pred             CCCccCCCCCCCCCCEeeCCCCCeEecCCCCcccCCCCCcccccccc
Confidence            46788876 423346799999999999999998643 3556655554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=87.75  E-value=0.35  Score=41.25  Aligned_cols=41  Identities=27%  Similarity=0.716  Sum_probs=31.2

Q ss_pred             ccccccCC---CCCCCCCCeeecCC------CceeeeCCCCCCCCCCCCcccc
Q psy2857         281 DIDECKAL---DKPCGLRAICENTV------PGFNCLCPKGYSGKPDAKVACE  324 (332)
Q Consensus       281 ~~d~C~~~---~~~C~~~~~C~~~~------g~~~C~C~~g~~g~~~~~~~c~  324 (332)
                      +.++|...   .+.|.  ..|++.+      ++|.|.|+.||+..++.+ +|.
T Consensus       266 ~~n~C~~~~~~ng~Cs--~~C~~~p~~~~~~~~~~C~C~~g~~l~~d~~-~C~  315 (316)
T 1ijq_A          266 GVNWCERTTLSNGGCQ--YLCLPAPQINPHSPKFTCACPDGMLLARDMR-SCL  315 (316)
T ss_dssp             CCCTTSSSSSGGGGCS--SEEEECCCCSTTCCSEEEECCTTCEECTTSS-CEE
T ss_pred             ccccccccccCCCCcC--cccCCCccccCCCCCeEeeCCCCCEECCCCC-ccC
Confidence            45778754   44674  6899775      689999999999988776 675

>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A*

Probab=86.13  E-value=0.94  Score=33.76  Aligned_cols=29  Identities=21%  Similarity=0.592  Sum_probs=24.0

Q ss_pred             CCCCCCeeeeC--CCCe-EeeCCCCCccCCCC
Q psy2857          26 PCGVNATCIDT--QGSY-SCVCKEHYTGDPYQ   54 (332)
Q Consensus        26 ~C~~~g~C~~~--~g~~-~C~C~~G~~g~~~~   54 (332)
                      ||.++|+|+..  ...| .|.|++||.|..++
T Consensus        14 pC~NGGtC~~~~~~s~~~~C~Cp~g~~G~~Ce   45 (145)
T 2i9a_A           14 DCLNGGTCVSNKYFSNIHWCNCPKKFGGQHCE   45 (145)
T ss_dssp             CCCTTCEEEECSSSTTCEEEECCTTEESTTSC
T ss_pred             CCCCCCCcCCCccccCCccccCCCCCCCCcee
Confidence            79999999886  3455 89999999997664

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=85.58  E-value=0.4  Score=45.29  Aligned_cols=42  Identities=31%  Similarity=0.752  Sum_probs=33.8

Q ss_pred             ccccccCCCCCCCCCCeeecCC-CceeeeCCCCCCCCCCCCccccc
Q psy2857         281 DIDECKALDKPCGLRAICENTV-PGFNCLCPKGYSGKPDAKVACEQ  325 (332)
Q Consensus       281 ~~d~C~~~~~~C~~~~~C~~~~-g~~~C~C~~g~~g~~~~~~~c~~  325 (332)
                      .+++|....+.|.  ..|++.+ ++|.|.|+.||....+.+ +|.+
T Consensus       264 ~~n~C~~~ng~C~--~~C~~~~~~~~~C~C~~g~~l~~d~~-~C~~  306 (628)
T 4a0p_A          264 GWNECASSNGHCS--HLCLAVPVGGFVCGCPAHYSLNADNR-TCSA  306 (628)
T ss_dssp             CCCTTTTTGGGCS--SEEEEETTTEEEEECSTTCEECTTSS-CEEC
T ss_pred             cceEeccCCCCcc--hhhhcCCCCCeeEEcCCCcEecccCC-cCcc
Confidence            4688876556774  6999988 999999999999887765 6754

>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A*

Probab=85.01  E-value=0.73  Score=38.50  Aligned_cols=58  Identities=21%  Similarity=0.433  Sum_probs=38.8

Q ss_pred             CCCCCeeeecCCceeeecCCCcccCCCCcccccc--------cccCC--CCCCCCCCeeecCCCceeeeCCCCCCCC
Q psy2857         250 CGVNATCIDTQGSYSCVCKEHYTGDPYQACSDID--------ECKAL--DKPCGLRAICENTVPGFNCLCPKGYSGK  316 (332)
Q Consensus       250 C~~~~~C~~~~~~~~C~C~~G~~g~~~~~C~~~d--------~C~~~--~~~C~~~~~C~~~~g~~~C~C~~g~~g~  316 (332)
                      |..++.|.-.    .|.|.+||+|..++ |....        .|...  ...|..+|.|+-.    .|.|..++.+.
T Consensus       198 C~g~G~~~CG----~C~C~~g~~G~~Ce-C~~~~~~~~~~~~~C~~~~~~~~CSgrG~C~CG----~C~C~~~~~~~  265 (280)
T 2p26_A          198 CHGKGFLECG----ICRCDTGYIGKNCE-CQTQGRSSQELEGSCRKDNNSIICSGLGDCVCG----QCLCHTSDVPG  265 (280)
T ss_dssp             GGGSEEEETT----EEEECTTEESTTSC-EECTTSCHHHHHHTTCSSTTSCGGGGSEEEETT----EEEECCCSSTT
T ss_pred             cCCCCeECCC----ceeCCCCCcCCcce-ecCCccccccccccCCCCCCCCccCCCceEeCC----eeECcCCCCCC
Confidence            5545555432    78999999999875 43221        57432  2358888889754    89998887665

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=84.80  E-value=0.69  Score=39.51  Aligned_cols=43  Identities=21%  Similarity=0.569  Sum_probs=31.2

Q ss_pred             cccccCCCCCCCCCCeeecCCC--ceeeeCCCCCCCCCCCCccccccc
Q psy2857         282 IDECKALDKPCGLRAICENTVP--GFNCLCPKGYSGKPDAKVACEQEK  327 (332)
Q Consensus       282 ~d~C~~~~~~C~~~~~C~~~~g--~~~C~C~~g~~g~~~~~~~c~~~~  327 (332)
                      .++|......|.  ..|++.++  +|.|.|+.||+...+.+ +|.+.+
T Consensus       267 ~n~C~~~ng~Cs--~~C~~~~~~~~~~C~C~~g~~l~~d~~-~c~~~~  311 (318)
T 3sov_A          267 TNPCGIDNGGCS--HLCLMSPVKPFYQCACPTGVKLLENGK-TCKDGN  311 (318)
T ss_dssp             CCTTTTTGGGCS--SEEEECSSTTSEEEECSTTCCBCTTSS-CBCC--
T ss_pred             ccccccCCCCcc--eEEecCCCCCCeEEECCCCCEECCCCC-CCCCCC
Confidence            466765445674  68988765  79999999999998876 787644

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=84.45  E-value=0.35  Score=41.97  Aligned_cols=39  Identities=41%  Similarity=0.882  Sum_probs=23.3

Q ss_pred             CCCCCCCCCCCCCceecCCCceEeeCCCCCccCCCCccccc
Q psy2857         143 DECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKD  183 (332)
Q Consensus       143 ~~C~~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~~c~~  183 (332)
                      +||.....|.  ..|.++.++|.|.|++||........|.+
T Consensus         2 ~ec~~~~~C~--~~C~n~~g~~~C~C~~g~~l~~d~~~C~~   40 (349)
T 3v64_C            2 NECAEEGYCS--QGCTNSEGAFQCWCEAGYELRPDRRSCKA   40 (349)
T ss_dssp             -------CCS--SEECCC---CCEECCTTEEECTTSSCEEE
T ss_pred             cccCCCCCCc--CeeecCCCCeEEECCCCccCCCCCCcccc
Confidence            4565234454  47999999999999999998777777764

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=83.80  E-value=0.75  Score=47.19  Aligned_cols=36  Identities=22%  Similarity=0.714  Sum_probs=32.4

Q ss_pred             cCccCCCCCCCCCeeeecCCceeeecC-CCcccCCCC
Q psy2857         242 INECQSNPCGVNATCIDTQGSYSCVCK-EHYTGDPYQ  277 (332)
Q Consensus       242 ~~~C~~~~C~~~~~C~~~~~~~~C~C~-~G~~g~~~~  277 (332)
                      .+.|...||.++++|+....+|.|.|+ +||+|..|.
T Consensus      1017 ~~~C~~~pC~ngG~C~~~~~~~~C~C~~~g~~G~~C~ 1053 (1245)
T 3qcw_A         1017 STTCQEDSCSNQGVCLQQWDGFSCDCSMTSFSGPLCN 1053 (1245)
T ss_dssp             CCCCCTTSSSSSCEEEEETTEEEEECTTSSCBSTTSC
T ss_pred             cCceECCcCCCCCEeCCCCCCCEEECCCCCCCCCCcc
Confidence            367888999999999999999999999 699999775

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=82.43  E-value=0.88  Score=46.70  Aligned_cols=36  Identities=36%  Similarity=0.787  Sum_probs=32.6

Q ss_pred             cCccCCCCCCCCCeeeecCCceeeecC-CCcccCCCC
Q psy2857         242 INECQSNPCGVNATCIDTQGSYSCVCK-EHYTGDPYQ  277 (332)
Q Consensus       242 ~~~C~~~~C~~~~~C~~~~~~~~C~C~-~G~~g~~~~  277 (332)
                      .+.|.++||.+++.|++...+|.|.|+ +||.|..|+
T Consensus       619 ~~~C~~~pC~ngg~C~~~~~~~~C~C~~~g~~G~~C~  655 (1245)
T 3qcw_A          619 AKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYLGRSCE  655 (1245)
T ss_dssp             SCGGGSCCCCTTCEEEECSSSEEEECTTTTEESTTSC
T ss_pred             CCCCCccCCCCCCEEeCCCCCeEEECCCCCcccccCc
Confidence            467888999999999999999999999 799998775

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=81.72  E-value=0.65  Score=43.78  Aligned_cols=41  Identities=27%  Similarity=0.694  Sum_probs=33.1

Q ss_pred             ccccccCCCCCCCCCCeeecCCCceeeeCCCCCCCCCCCCcccc
Q psy2857         281 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACE  324 (332)
Q Consensus       281 ~~d~C~~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~~~c~  324 (332)
                      ..++|....+.|.  ..|++.+++|.|.|+.||...++.+ +|.
T Consensus       577 ~~~~C~~~ng~C~--~~C~~~~~~~~C~C~~g~~l~~d~~-~C~  617 (619)
T 3s94_A          577 GSNPCAEENGGCS--HLCLYRPQGLRCACPIGFELISDMK-TCI  617 (619)
T ss_dssp             CCCGGGSGGGGCS--SEEEEETTEEEEECCTTCEECSSTT-CEE
T ss_pred             ccccCCCCCCChh--HhhccCCCCeEEECCCCCEECCCCC-cCC
Confidence            3577876556784  6999999999999999999887765 675

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	332
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	5e-08
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	5e-08
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	3e-04
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	0.003
d1edmb_	39	g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens	0.003
d2c4fl1	37	g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof	2e-07
d2c4fl1	37	g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof	2e-07
d2c4fl1	37	g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof	0.001
d2c4fl1	37	g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof	0.003
d2c4fl1	37	g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrof	0.003
d1emoa1	43	g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sa	4e-07
d1emoa1	43	g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sa	4e-07
d1emoa1	43	g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sa	1e-06
d1emoa1	43	g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sa	5e-04
d1emoa1	43	g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sa	5e-04
d2vj3a2	39	g.3.11.1 (A:453-491) Neurogenic locus notch homolo	6e-07
d2vj3a2	39	g.3.11.1 (A:453-491) Neurogenic locus notch homolo	6e-07
d1lmja2	42	g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapien	9e-07
d1lmja2	42	g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapien	1e-04
d1lmja2	42	g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapien	1e-04
d1lmja2	42	g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapien	0.001
d1lmja2	42	g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapien	0.001
d2vj3a1	42	g.3.11.1 (A:411-452) Neurogenic locus notch homolo	1e-06
d2vj3a1	42	g.3.11.1 (A:411-452) Neurogenic locus notch homolo	1e-06
d2vj3a1	42	g.3.11.1 (A:411-452) Neurogenic locus notch homolo	1e-05
d2vj3a1	42	g.3.11.1 (A:411-452) Neurogenic locus notch homolo	1e-05
d2vj3a1	42	g.3.11.1 (A:411-452) Neurogenic locus notch homolo	1e-05
d1lmja1	44	g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens	2e-06
d1lmja1	44	g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens	2e-05
d1lmja1	44	g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens	2e-05
d1lmja1	44	g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens	5e-04
d1lmja1	44	g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens	5e-04
d1uzka1	43	g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sa	2e-06
d1uzka1	43	g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sa	1e-05
d1uzka1	43	g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sa	1e-05
d1uzka1	43	g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sa	0.002
d1uzka1	43	g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sa	0.002
d1i0ua2	41	g.3.11.1 (A:42-82) Low density lipoprotein (LDL) r	4e-06
d1i0ua2	41	g.3.11.1 (A:42-82) Low density lipoprotein (LDL) r	0.002
d1i0ua2	41	g.3.11.1 (A:42-82) Low density lipoprotein (LDL) r	0.002
d1xkba1	39	g.3.11.1 (A:48-86) Factor X, N-terminal module {Hu	4e-06
d1xkba1	39	g.3.11.1 (A:48-86) Factor X, N-terminal module {Hu	4e-06
d1apqa_	53	g.3.11.1 (A:) Complement protease C1R {Human (Homo	5e-06
d1apqa_	53	g.3.11.1 (A:) Complement protease C1R {Human (Homo	0.002
d1apqa_	53	g.3.11.1 (A:) Complement protease C1R {Human (Homo	0.002
d1apqa_	53	g.3.11.1 (A:) Complement protease C1R {Human (Homo	0.004
d1apqa_	53	g.3.11.1 (A:) Complement protease C1R {Human (Homo	0.004
d1uzka2	43	g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sa	6e-06
d1uzka2	43	g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sa	2e-04
d1uzka2	43	g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sa	2e-04
d1uzka2	43	g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sa	0.002
d1uzka2	43	g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sa	0.002
d2vj3a3	35	g.3.11.1 (A:492-526) Neurogenic locus notch homolo	9e-06
d2vj3a3	35	g.3.11.1 (A:492-526) Neurogenic locus notch homolo	9e-06
d1dx5i3	40	g.3.11.1 (I:423-462) Thrombomodulin, different EGF	1e-05
d1dx5i3	40	g.3.11.1 (I:423-462) Thrombomodulin, different EGF	0.001
d1dx5i3	40	g.3.11.1 (I:423-462) Thrombomodulin, different EGF	0.001
d1szba2	45	g.3.11.1 (A:124-168) Mannose-binding protein assoc	3e-05
d1g1ta2	39	g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human	7e-05
d1g1ta2	39	g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human	7e-05
d1g1sa2	40	g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human	8e-05
d1g1sa2	40	g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human	8e-05
d1gl4a2	40	g.3.11.5 (A:359-398) EGF-like domain of nidogen-1	8e-05
d1gl4a2	40	g.3.11.5 (A:359-398) EGF-like domain of nidogen-1	8e-05
d1gl4a2	40	g.3.11.5 (A:359-398) EGF-like domain of nidogen-1	1e-04
d1nt0a3	45	g.3.11.1 (A:120-164) Mannose-binding protein assoc	1e-04
d1nzia2	42	g.3.11.1 (A:118-159) Complement C1S component {Hum	1e-04
d1autl1	48	g.3.11.1 (L:49-96) Activated protein c (autoprothr	2e-04
d1autl1	48	g.3.11.1 (L:49-96) Activated protein c (autoprothr	2e-04
d1haea_	63	g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Hu	2e-04
d1haea_	63	g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Hu	5e-04
d1emoa2	39	g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sa	3e-04
d3bpse1	40	g.3.11.1 (E:293-332) Low density lipoprotein (LDL)	0.001
d3bpse1	40	g.3.11.1 (E:293-332) Low density lipoprotein (LDL)	0.001
d3bpse1	40	g.3.11.1 (E:293-332) Low density lipoprotein (LDL)	0.001
d1q4ga2	42	g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EG	0.004
d1q4ga2	42	g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EG	0.004

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (110), Expect = 5e-08
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGD 51
          VD ++C+SNPC    +C D   SY C C   + G 
Sbjct: 1  VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGK 35

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (110), Expect = 5e-08
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGD 274
           VD ++C+SNPC    +C D   SY C C   + G 
Sbjct: 1   VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGK 35

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (83), Expect = 3e-04
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 140 VDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
           VD D+C+  +PC     C +   S+ C C  G+ G
Sbjct: 1   VDGDQCE-SNPCLNGGSCKDDINSYECWCPFGFEG 34

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (75), Expect = 0.003
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 58 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGK 93
          D D+C     PC     C++ +  + C CP G+ GK
Sbjct: 2  DGDQC--ESNPCLNGGSCKDDINSYECWCPFGFEGK 35

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.7 bits (75), Expect = 0.003
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)

Query: 281 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGK 316
           D D+C     PC     C++ +  + C CP G+ GK
Sbjct: 2   DGDQC--ESNPCLNGGSCKDDINSYECWCPFGFEGK 35

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 44.3 bits (105), Expect = 2e-07
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 18 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGD 51
          D ++C S+PC    +C D   SY C C   + G 
Sbjct: 1  DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGR 34

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 44.3 bits (105), Expect = 2e-07
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGD 274
           D ++C S+PC    +C D   SY C C   + G 
Sbjct: 1   DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGR 34

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 33.9 bits (78), Expect = 0.001
 Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 141 DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
           D D+C    PC     C +   S+ C C+  + G
Sbjct: 1   DGDQCA-SSPCQNGGSCKDQLQSYICFCLPAFEG 33

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 32.7 bits (75), Expect = 0.003
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 58 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGK 93
          D D+C     PC     C++ +  + C C   + G+
Sbjct: 1  DGDQC--ASSPCQNGGSCKDQLQSYICFCLPAFEGR 34

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Length = 37

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 32.7 bits (75), Expect = 0.003
 Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 2/36 (5%)

Query: 281 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGK 316
           D D+C     PC     C++ +  + C C   + G+
Sbjct: 1   DGDQC--ASSPCQNGGSCKDQLQSYICFCLPAFEGR 34

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (103), Expect = 4e-07
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGD 51
          VD++EC+      +  CI+T GSY C C   Y   
Sbjct: 3  VDMDECKEPDVCKHGQCINTDGSYRCECPFGYILA 37

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (103), Expect = 4e-07
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGD 274
           VD++EC+      +  CI+T GSY C C   Y   
Sbjct: 3   VDMDECKEPDVCKHGQCINTDGSYRCECPFGYILA 37

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (101), Expect = 1e-06
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 139 CVDVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVG 174
            VD+DEC+         QC NT GS+RC+C  GY+ 
Sbjct: 2   AVDMDECKEP-DVCKHGQCINTDGSYRCECPFGYIL 36

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (81), Expect = 5e-04
 Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 2/38 (5%)

Query: 55 ACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSG 92
          +  D+DEC   +        C NT   + C CP GY  
Sbjct: 1  SAVDMDEC--KEPDVCKHGQCINTDGSYRCECPFGYIL 36

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (81), Expect = 5e-04
 Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 2/38 (5%)

Query: 278 ACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSG 315
           +  D+DEC   +        C NT   + C CP GY  
Sbjct: 1   SAVDMDEC--KEPDVCKHGQCINTDGSYRCECPFGYIL 36

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (102), Expect = 6e-07
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 19 INECQSNPCGVNATCIDTQGSYSCVCKEHYTGD 51
          +NEC SNPC  +ATC+D  G + C+C   Y G 
Sbjct: 1  VNECVSNPCQNDATCLDQIGEFQCICMPGYEGV 33

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (102), Expect = 6e-07
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 242 INECQSNPCGVNATCIDTQGSYSCVCKEHYTGD 274
           +NEC SNPC  +ATC+D  G + C+C   Y G 
Sbjct: 1   VNECVSNPCQNDATCLDQIGEFQCICMPGYEGV 33

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (101), Expect = 9e-07
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 141 DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKC 181
           D+DECQ          C NT GS+RC+C  G+  +P    C
Sbjct: 1   DIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSPNISAC 41

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (85), Expect = 1e-04
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 18 DINECQSNPCG-VNATCIDTQGSYSCVCKEHYTGDP 52
          DI+ECQ +P       C +T+GSY C C   +   P
Sbjct: 1  DIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSP 36

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (85), Expect = 1e-04
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 241 DINECQSNPCG-VNATCIDTQGSYSCVCKEHYTGDP 275
           DI+ECQ +P       C +T+GSY C C   +   P
Sbjct: 1   DIDECQRDPLLCRGGVCHNTEGSYRCECPPGHQLSP 36

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (78), Expect = 0.001
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 58 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAK 97
          DIDEC+     C    +C NT   + C CP G+   P+  
Sbjct: 1  DIDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQLSPNIS 39

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (78), Expect = 0.001
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 281 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAK 320
           DIDEC+     C    +C NT   + C CP G+   P+  
Sbjct: 1   DIDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQLSPNIS 39

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (100), Expect = 1e-06
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 18 DINECQ--SNPCGVNATCIDTQGSYSCVCKEHYTGD 51
          D++EC   +NPC     CI+T GS+ C C + YTG 
Sbjct: 2  DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP 37

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (100), Expect = 1e-06
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 241 DINECQ--SNPCGVNATCIDTQGSYSCVCKEHYTGD 274
           D++EC   +NPC     CI+T GS+ C C + YTG 
Sbjct: 2   DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP 37

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (93), Expect = 1e-05
 Identities = 20/35 (57%), Positives = 24/35 (68%), Gaps = 1/35 (2%)

Query: 141 DVDECQLG-DPCGPQAQCTNTPGSFRCDCVEGYVG 174
           DVDEC LG +PC    +C NT GSF C C++GY G
Sbjct: 2   DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTG 36

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (92), Expect = 1e-05
 Identities = 15/36 (41%), Positives = 19/36 (52%)

Query: 58 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGK 93
          D+DEC     PC     C NT+  F C C +GY+G 
Sbjct: 2  DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP 37

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (92), Expect = 1e-05
 Identities = 15/36 (41%), Positives = 19/36 (52%)

Query: 281 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGK 316
           D+DEC     PC     C NT+  F C C +GY+G 
Sbjct: 2   DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGP 37

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (99), Expect = 2e-06
 Identities = 16/37 (43%), Positives = 20/37 (54%)

Query: 141 DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPP 177
           D+DEC++      + QC NTPG F C C EGY     
Sbjct: 2   DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGFM 38

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (91), Expect = 2e-05
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 18 DINECQSNPCG-VNATCIDTQGSYSCVCKEHYTGDP 52
          DI+EC+ +P       C++T G + C C E Y    
Sbjct: 2  DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGF 37

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (91), Expect = 2e-05
 Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 241 DINECQSNPCG-VNATCIDTQGSYSCVCKEHYTGDP 275
           DI+EC+ +P       C++T G + C C E Y    
Sbjct: 2   DIDECRISPDLCGRGQCVNTPGDFECKCDEGYESGF 37

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (81), Expect = 5e-04
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 57  SDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVAC 100
           +DIDEC+     CG R  C NT   F C C +GY         C
Sbjct: 1   TDIDECRISPDLCG-RGQCVNTPGDFECKCDEGYESGFMMMKNC 43

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (81), Expect = 5e-04
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 280 SDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVAC 323
           +DIDEC+     CG R  C NT   F C C +GY         C
Sbjct: 1   TDIDECRISPDLCG-RGQCVNTPGDFECKCDEGYESGFMMMKNC 43

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (98), Expect = 2e-06
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 141 DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKD 183
           DV+EC     C     C NTPGS+ CDC   +   P R+ C D
Sbjct: 2   DVNECLDPTTC-ISGNCVNTPGSYICDCPPDFELNPTRVGCVD 43

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (93), Expect = 1e-05
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 18 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDP 52
          D+NEC      ++  C++T GSY C C   +  +P
Sbjct: 2  DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNP 36

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (93), Expect = 1e-05
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDP 275
           D+NEC      ++  C++T GSY C C   +  +P
Sbjct: 2   DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNP 36

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (76), Expect = 0.002
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 57 SDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAK 97
          +D++EC  LD    +   C NT   + C CP  +   P   
Sbjct: 1  TDVNEC--LDPTTCISGNCVNTPGSYICDCPPDFELNPTRV 39

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.3 bits (76), Expect = 0.002
 Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 2/41 (4%)

Query: 280 SDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAK 320
           +D++EC  LD    +   C NT   + C CP  +   P   
Sbjct: 1   TDVNEC--LDPTTCISGNCVNTPGSYICDCPPDFELNPTRV 39

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (96), Expect = 4e-06
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 142 VDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDV 184
           +DECQ  DP      C N  G ++C C EG+   P    CK V
Sbjct: 1   IDECQ--DPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKACKAV 41

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (76), Expect = 0.002
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 19 INECQSNPCGVNATCIDTQGSYSCVCKEHYTGDP 52
          I+ECQ +P   +  C++ +G Y C C+E +  DP
Sbjct: 1  IDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLDP 33

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (76), Expect = 0.002
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 242 INECQSNPCGVNATCIDTQGSYSCVCKEHYTGDP 275
           I+ECQ +P   +  C++ +G Y C C+E +  DP
Sbjct: 1   IDECQ-DPDTCSQLCVNLEGGYKCQCEEGFQLDP 33

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (96), Expect = 4e-06
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 20 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGD 51
          ++C+++PC     C D  G Y+C C E + G 
Sbjct: 1  DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK 32

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (96), Expect = 4e-06
 Identities = 11/32 (34%), Positives = 18/32 (56%)

Query: 243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGD 274
           ++C+++PC     C D  G Y+C C E + G 
Sbjct: 1   DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGK 32

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (96), Expect = 5e-06
 Identities = 15/50 (30%), Positives = 18/50 (36%), Gaps = 7/50 (14%)

Query: 140 VDVDECQLGD-------PCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCK 182
           VD+DEC               Q  C N  G + C C  GY     R  C+
Sbjct: 2   VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRHSCQ 51

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (78), Expect = 0.002
 Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 8/44 (18%)

Query: 17 VDINECQSN--------PCGVNATCIDTQGSYSCVCKEHYTGDP 52
          VD++EC S                C +  G Y C C+  Y    
Sbjct: 2  VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQE 45

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (78), Expect = 0.002
 Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 8/44 (18%)

Query: 240 VDINECQSN--------PCGVNATCIDTQGSYSCVCKEHYTGDP 275
           VD++EC S                C +  G Y C C+  Y    
Sbjct: 2   VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQE 45

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (75), Expect = 0.004
 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 6/46 (13%)

Query: 58 DIDECK------ALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAK 97
          D+DEC         D     + +C N V G+ C C  GY  + D  
Sbjct: 3  DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRH 48

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.0 bits (75), Expect = 0.004
 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 6/46 (13%)

Query: 281 DIDECK------ALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAK 320
           D+DEC         D     + +C N V G+ C C  GY  + D  
Sbjct: 3   DLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRH 48

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (95), Expect = 6e-06
 Identities = 16/41 (39%), Positives = 19/41 (46%)

Query: 141 DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKC 181
           D+DECQ         +C NT GSF+C C  GY        C
Sbjct: 2   DIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNEDTRVC 42

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (84), Expect = 2e-04
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 18 DINECQSNPCG-VNATCIDTQGSYSCVCKEHYTGDP 52
          DI+ECQ  P       CI+T GS+ C C   Y  + 
Sbjct: 2  DIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNE 37

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (84), Expect = 2e-04
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 241 DINECQSNPCG-VNATCIDTQGSYSCVCKEHYTGDP 275
           DI+ECQ  P       CI+T GS+ C C   Y  + 
Sbjct: 2   DIDECQELPGLCQGGKCINTFGSFQCRCPTGYYLNE 37

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (76), Expect = 0.002
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 58 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAK 97
          DIDEC+ L   C     C NT   F C CP GY    D +
Sbjct: 2  DIDECQELPGLCQ-GGKCINTFGSFQCRCPTGYYLNEDTR 40

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 43

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (76), Expect = 0.002
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 281 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAK 320
           DIDEC+ L   C     C NT   F C CP GY    D +
Sbjct: 2   DIDECQELPGLCQ-GGKCINTFGSFQCRCPTGYYLNEDTR 40

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 35

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (94), Expect = 9e-06
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 20 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGD 51
          +EC S+PC  N  C+D    + C C   +TG 
Sbjct: 1  DECASSPCLHNGRCLDKINEFQCECPTGFTGH 32

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Length = 35

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (94), Expect = 9e-06
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGD 274
           +EC S+PC  N  C+D    + C C   +TG 
Sbjct: 1   DECASSPCLHNGRCLDKINEFQCECPTGFTGH 32

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (92), Expect = 1e-05
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 2/35 (5%)

Query: 141 DVDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGA 175
           D+DEC+ G  C     C N PG+F C C      A
Sbjct: 1   DIDECENGGFC--SGVCHNLPGTFECICGPDSALA 33

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (79), Expect = 0.001
 Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 18 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGD 51
          DI+EC  N    +  C +  G++ C+C       
Sbjct: 1  DIDEC-ENGGFCSGVCHNLPGTFECICGPDSALA 33

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (79), Expect = 0.001
 Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGD 274
           DI+EC  N    +  C +  G++ C+C       
Sbjct: 1   DIDEC-ENGGFCSGVCHNLPGTFECICGPDSALA 33

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 45

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (90), Expect = 3e-05
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 2/44 (4%)

Query: 142 VDECQL--GDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKD 183
           +DECQ+  G+       C N  G F C C  GYV    +  C +
Sbjct: 1   IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKRTCSE 44

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (87), Expect = 7e-05
 Identities = 8/32 (25%), Positives = 16/32 (50%)

Query: 20 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGD 51
            C +  C  +  C++T  +Y+C C   ++G 
Sbjct: 2  AACTNTSCSGHGECVETINNYTCKCDPGFSGL 33

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (87), Expect = 7e-05
 Identities = 8/32 (25%), Positives = 16/32 (50%)

Query: 243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGD 274
             C +  C  +  C++T  +Y+C C   ++G 
Sbjct: 2   AACTNTSCSGHGECVETINNYTCKCDPGFSGL 33

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (87), Expect = 8e-05
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 20 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGD 51
            CQ   C     C++T G+Y+C C   + G 
Sbjct: 2  ASCQDMSCSKQGECLETIGNYTCSCYPGFYGP 33

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (87), Expect = 8e-05
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGD 274
             CQ   C     C++T G+Y+C C   + G 
Sbjct: 2   ASCQDMSCSKQGECLETIGNYTCSCYPGFYGP 33

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.1 bits (86), Expect = 8e-05
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 24 SNPCGVNATCIDTQGSYSCVCKEHYTGD 51
           + C V+A C D    + C C  +YTG+
Sbjct: 6  RHQCSVHAECRDYATGFCCRCVANYTGN 33

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.1 bits (86), Expect = 8e-05
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 247 SNPCGVNATCIDTQGSYSCVCKEHYTGD 274
            + C V+A C D    + C C  +YTG+
Sbjct: 6   RHQCSVHAECRDYATGFCCRCVANYTGN 33

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.7 bits (85), Expect = 1e-04
 Identities = 10/31 (32%), Positives = 12/31 (38%), Gaps = 1/31 (3%)

Query: 145 CQLG-DPCGPQAQCTNTPGSFRCDCVEGYVG 174
           C      C   A+C +    F C CV  Y G
Sbjct: 2   CANNRHQCSVHAECRDYATGFCCRCVANYTG 32

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 45

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.8 bits (85), Expect = 1e-04
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 142 VDECQL--GDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKDV 184
           VDEC+   GD       C N  G + C C  GY+    +  C  +
Sbjct: 1   VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKHTCSAL 45

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (85), Expect = 1e-04
 Identities = 9/40 (22%), Positives = 11/40 (27%)

Query: 143 DECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCK 182
           +EC           C N  G + C C   Y        C 
Sbjct: 1   NECTDFVDVPCSHFCNNFIGGYFCSCPPEYFLHDDMKNCG 40

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (84), Expect = 2e-04
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 15 AIVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGD 51
           +   + C S  C  + TCID  GS+SC C+  + G 
Sbjct: 4  VLPLEHPCASLCC-GHGTCIDGIGSFSCDCRSGWEGR 39

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 48

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (84), Expect = 2e-04
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGD 274
             + C S  C  + TCID  GS+SC C+  + G 
Sbjct: 7   LEHPCASLCC-GHGTCIDGIGSFSCDCRSGWEGR 39

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (84), Expect = 2e-04
 Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 5/41 (12%)

Query: 16 IVDINECQSNPCGVNATC-----IDTQGSYSCVCKEHYTGD 51
          +V   E +   C     C     +     Y C C+  +TG 
Sbjct: 3  LVKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGA 43

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (82), Expect = 5e-04
 Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 5/40 (12%)

Query: 240 VDINECQSNPCGVNATC-----IDTQGSYSCVCKEHYTGD 274
           V   E +   C     C     +     Y C C+  +TG 
Sbjct: 4   VKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGA 43

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 39

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (82), Expect = 3e-04
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 143 DECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAP 176
           DEC +G+PCG    C N  G F C C EG+   P
Sbjct: 2   DECSVGNPCG-NGTCKNVIGGFECTCEEGFEPGP 34

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (79), Expect = 0.001
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 20 NECQSNPCGVNATCIDTQGSYSCVCKEHYT 49
          NEC  N  G +  C D +  Y C+C + + 
Sbjct: 3  NECLDNNGGCSHVCNDLKIGYECLCPDGFQ 32

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (79), Expect = 0.001
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 243 NECQSNPCGVNATCIDTQGSYSCVCKEHYT 272
           NEC  N  G +  C D +  Y C+C + + 
Sbjct: 3   NECLDNNGGCSHVCNDLKIGYECLCPDGFQ 32

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Length = 40

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (78), Expect = 0.001
 Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 1/32 (3%)

Query: 142 VDECQLGDPCGPQAQCTNTPGSFRCDCVEGYV 173
            +EC   +  G    C +    + C C +G+ 
Sbjct: 2   TNECLD-NNGGCSHVCNDLKIGYECLCPDGFQ 32

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

 Score = 32.5 bits (74), Expect = 0.004
 Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 2/35 (5%)

Query: 19 INECQSNPCGVNATCIDT-QGSYSCVCKEH-YTGD 51
          +N C   PC     C+      Y C C    Y+G 
Sbjct: 2  VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGP 36

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]} Length = 42

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

 Score = 32.5 bits (74), Expect = 0.004
 Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 2/35 (5%)

Query: 242 INECQSNPCGVNATCIDT-QGSYSCVCKEH-YTGD 274
           +N C   PC     C+      Y C C    Y+G 
Sbjct: 2   VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGP 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	332
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	99.03
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.9
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.89
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	98.89
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	98.88
d1edmb_	39	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	98.86
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.85
d2vj3a1	42	Neurogenic locus notch homolog protein 1, Notch1 {	98.83
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	98.83
d2c4fl1	37	Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}	98.82
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.79
d2vj3a2	39	Neurogenic locus notch homolog protein 1, Notch1 {	98.77
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.75
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	98.72
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.7
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	98.69
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	98.65
d2vj3a3	35	Neurogenic locus notch homolog protein 1, Notch1 {	98.62
d1xkba1	39	Factor X, N-terminal module {Human (Homo sapiens)	98.58
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	98.55
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.53
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.53
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	98.52
d1nt0a3	45	Mannose-binding protein associated serine protease	98.52
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.46
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.46
d1szba2	45	Mannose-binding protein associated serine protease	98.43
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.4
d1g1ta2	39	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.34
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	98.31
d1g1sa2	40	E-selectin, EGF-domain {Human (Homo sapiens) [TaxI	98.31
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	98.31
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	98.27
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	98.26
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	98.24
d1autl1	48	Activated protein c (autoprothrombin IIa) {Human (	98.22
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	98.21
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	98.17
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	98.15
d1nt0a3	45	Mannose-binding protein associated serine protease	98.14
d1q4ga2	42	Prostaglandin H2 synthase-1, EGF-like module {Shee	98.14
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	98.13
d1szba2	45	Mannose-binding protein associated serine protease	98.11
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	98.09
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	98.08
d1tpga1	41	Plasminogen activator (tissue-type), t-PA {Human (	98.06
d1cvua2	41	Prostaglandin H2 synthase-1, EGF-like module {Mous	97.97
d1gl4a2	40	EGF-like domain of nidogen-1 {Mouse (Mus musculus)	97.97
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	97.93
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.89
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	97.87
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	97.65
d1haea_	63	Heregulin-alpha, EGF-like domain {Human (Homo sapi	97.59
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	97.48
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	97.47
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	97.46
d1emoa2	39	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	97.44
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	97.37
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	97.31
d3egfa_	53	Epidermal growth factor, EGF {Mouse (Mus musculus)	97.28
d1nqlb_	48	Epidermal growth factor, EGF {Human (Homo sapiens)	97.04
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	96.92
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	96.9
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	96.68
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	96.54
d1rfnb_	57	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	96.43
d2bz6l1	53	Coagulation factor VIIa {Human (Homo sapiens) [Tax	96.09
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	95.79
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	95.24
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	94.86
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	94.65
d1rfnb_	57	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	94.54
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	94.53
d1k36a_	46	Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI	94.13
d1ioxa_	50	Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]	93.75
d1moxc_	49	Transforming growth factor alpha {Human (Homo sapi	92.0
d2bz6l1	53	Coagulation factor VIIa {Human (Homo sapiens) [Tax	90.46
d1jv2b4	31	Integrin beta EGF-like domains {Human (Homo sapien	90.31
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	90.09
d1jv2b5	43	Integrin beta EGF-like domains {Human (Homo sapien	89.78
d1dx5i1	43	Thrombomodulin, different EGF-like domains {Human	89.05
d1l3ya_	41	Integrin beta EGF-like domains {Human (Homo sapien	88.59
d1xdtr_	41	Heparin-binding epidermal growth factor, HBEGF {Hu	88.46
d1jv2b5	43	Integrin beta EGF-like domains {Human (Homo sapien	85.69
d1kloa1	55	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	83.21
d1kloa1	55	Laminin gamma1 chain {Mouse (Mus musculus) [TaxId:	81.08

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.1e-10  Score=66.60  Aligned_cols=39  Identities=38%  Similarity=0.846  Sum_probs=35.7

Q ss_pred             cccccccCCCCCCCCCCeeecCCCceeeeCCCCCCCCCC
Q psy2857         280 SDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPD  318 (332)
Q Consensus       280 ~~~d~C~~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~  318 (332)
                      +|||+|+...++|.++++|+++.++|+|.|++||+|..+
T Consensus         1 qDideC~~~~~pC~n~g~C~n~~g~y~C~C~~G~~G~~C   39 (42)
T d2vj3a1           1 QDVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRC   39 (42)
T ss_dssp             CCCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEESTTS
T ss_pred             CCCccccCCCCCCCCCcEeECCCCCEEeECCCCCcCCCC
Confidence            489999987899999999999999999999999998843

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=3.7e-10  Score=64.24  Aligned_cols=41  Identities=39%  Similarity=0.848  Sum_probs=35.7

Q ss_pred             ccccccCCCCCCCCCCeeecCCCceeeeCCCCCCCCCCCCccc
Q psy2857         281 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVAC  323 (332)
Q Consensus       281 ~~d~C~~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~~~c  323 (332)
                      |||||+..++.|. +++|+|++|+|+|.|++||+..+.++ .|
T Consensus         1 DidEC~~~~~~C~-~~~C~Nt~Gsy~C~C~~Gy~l~~d~~-~C   41 (42)
T d1lmja2           1 DIDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQLSPNIS-AC   41 (42)
T ss_dssp             ECCHHHHCSSTTT-TSEEEEETTEEEEESCTTSCCCSSSC-CC
T ss_pred             CccccCCCCCCCC-CCEeECCCCCeEEeCCCCCeECcCCC-cc
Confidence            6899998888886 67999999999999999999887654 44

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=2.2e-10  Score=65.56  Aligned_cols=42  Identities=43%  Similarity=0.922  Sum_probs=36.4

Q ss_pred             cccccccCCCCCCCCCCeeecCCCceeeeCCCCCCCCCCCCccc
Q psy2857         280 SDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVAC  323 (332)
Q Consensus       280 ~~~d~C~~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~~~c  323 (332)
                      +|||||+..++.|. ++.|+|++|+|+|.|++||+.+...+ .|
T Consensus         1 qDinEC~~~~~~c~-~~~C~Nt~Gsy~C~C~~Gy~l~~~~~-~C   42 (43)
T d1uzka2           1 EDIDECQELPGLCQ-GGKCINTFGSFQCRCPTGYYLNEDTR-VC   42 (43)
T ss_dssp             EECCHHHHCGGGGB-TSEEEECSSCEEEECCTTCCBCTTTC-BB
T ss_pred             CCcccccCCCCCcC-CCEEECCCCCeEeECCCCCeECcCCC-cc
Confidence            58999998778886 56999999999999999999988765 55

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.89  E-value=6.3e-10  Score=61.18  Aligned_cols=36  Identities=33%  Similarity=0.797  Sum_probs=33.7

Q ss_pred             ccCccCCCCCCCCCeeeecCCceeeecCCCcccCCC
Q psy2857         241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPY  276 (332)
Q Consensus       241 ~~~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~  276 (332)
                      |+|+|.++||.++++|++..++|+|+|++||+|..+
T Consensus         1 D~d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~C   36 (37)
T d2c4fl1           1 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC   36 (37)
T ss_dssp             TCCGGGGCCCCTTCEEEEETTEEEEECCTTEESTTS
T ss_pred             CcccCCCCCCCCCCEEECCCCCeEEECCCCCcCCCC
Confidence            578999999999999999999999999999999865

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=8.3e-10  Score=61.52  Aligned_cols=38  Identities=37%  Similarity=0.801  Sum_probs=35.0

Q ss_pred             cccCccCCCCCCCCCeeeecCCceeeecCCCcccCCCC
Q psy2857         240 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQ  277 (332)
Q Consensus       240 ~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~  277 (332)
                      +|+|+|.++||.++++|++..++|+|.|++||+|..++
T Consensus         1 id~d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~Ce   38 (39)
T d1edmb_           1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE   38 (39)
T ss_dssp             CCCCTTTTCCCCTTCEEEEETTEEEEECCTTCCSTTSC
T ss_pred             CccccCCCCCCCCCcEEEcCCCCEEEECCCCCCCCCCC
Confidence            36799999999999999999999999999999998764

>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=1.3e-09  Score=60.78  Aligned_cols=38  Identities=37%  Similarity=0.801  Sum_probs=35.0

Q ss_pred             ccCCcCCCCCCCCCCeeeeCCCCeEeeCCCCCccCCCC
Q psy2857          17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQ   54 (332)
Q Consensus        17 ~~~~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~g~~~~   54 (332)
                      +|+|+|.++||.++|+|++..++|.|.|++||+|..++
T Consensus         1 id~d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~Ce   38 (39)
T d1edmb_           1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE   38 (39)
T ss_dssp             CCCCTTTTCCCCTTCEEEEETTEEEEECCTTCCSTTSC
T ss_pred             CccccCCCCCCCCCcEEEcCCCCEEEECCCCCCCCCCC
Confidence            47899999999999999999999999999999997653

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=6.9e-10  Score=63.37  Aligned_cols=38  Identities=42%  Similarity=0.857  Sum_probs=33.5

Q ss_pred             cccccccCCCCCCCCCCeeecCCCceeeeCCCCCCCCCC
Q psy2857         280 SDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPD  318 (332)
Q Consensus       280 ~~~d~C~~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~  318 (332)
                      +|||||+..++.|. +++|+|+.|+|+|.|++||+++..
T Consensus         1 TDidEC~~~~~~C~-~~~C~Nt~Gsy~C~C~~Gy~~~~~   38 (44)
T d1lmja1           1 TDIDECRISPDLCG-RGQCVNTPGDFECKCDEGYESGFM   38 (44)
T ss_dssp             CCCCTTTTCSSTTT-TSCEEEETTEEEECCCSSEEECTT
T ss_pred             CcccccCCCCCCCC-CCEeEcCCCCeEEeCCCCCccCCC
Confidence            48999998888886 579999999999999999998753

>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.7e-09  Score=61.63  Aligned_cols=37  Identities=43%  Similarity=1.041  Sum_probs=33.6

Q ss_pred             ccCccC--CCCCCCCCeeeecCCceeeecCCCcccCCCC
Q psy2857         241 DINECQ--SNPCGVNATCIDTQGSYSCVCKEHYTGDPYQ  277 (332)
Q Consensus       241 ~~~~C~--~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~  277 (332)
                      |||+|.  ++||.++++|+++.++|+|.|++||+|..++
T Consensus         2 DideC~~~~~pC~n~g~C~n~~g~y~C~C~~G~~G~~Ce   40 (42)
T d2vj3a1           2 DVDECSLGANPCEHAGKCINTLGSFECQCLQGYTGPRCE   40 (42)
T ss_dssp             CCCTTTSSSCSSSTTCEEEECSSSEEEECCTTEESTTSC
T ss_pred             CCccccCCCCCCCCCcEeECCCCCEEeECCCCCcCCCCc
Confidence            678887  4799999999999999999999999998765

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.5e-09  Score=60.28  Aligned_cols=36  Identities=44%  Similarity=1.045  Sum_probs=33.8

Q ss_pred             cCccCCCCCCCCCeeeecCCceeeecCCCcccCCCC
Q psy2857         242 INECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQ  277 (332)
Q Consensus       242 ~~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~  277 (332)
                      ||+|.++||.++++|++..++|+|.|++||+|..++
T Consensus         1 Id~C~~~PC~n~g~C~~~~~~y~C~C~~G~~G~~Ce   36 (39)
T d2vj3a2           1 VNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCE   36 (39)
T ss_dssp             CCTTTTCCCCSSCEEEECSSCEEEECCTTEESSSSC
T ss_pred             CcCCcCCCCCCCCEEECCCCCEEEeCCCCCccCcCe
Confidence            588999999999999999999999999999999775

>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.82  E-value=1e-09  Score=60.32  Aligned_cols=36  Identities=33%  Similarity=0.797  Sum_probs=33.7

Q ss_pred             cCCcCCCCCCCCCCeeeeCCCCeEeeCCCCCccCCC
Q psy2857          18 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPY   53 (332)
Q Consensus        18 ~~~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~g~~~   53 (332)
                      |+|+|.++||.++|+|++..++|.|+|++||+|..+
T Consensus         1 D~d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~C   36 (37)
T d2c4fl1           1 DGDQCASSPCQNGGSCKDQLQSYICFCLPAFEGRNC   36 (37)
T ss_dssp             TCCGGGGCCCCTTCEEEEETTEEEEECCTTEESTTS
T ss_pred             CcccCCCCCCCCCCEEECCCCCeEEECCCCCcCCCC
Confidence            689999999999999999999999999999999754

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.4e-09  Score=62.10  Aligned_cols=37  Identities=35%  Similarity=0.712  Sum_probs=33.2

Q ss_pred             ccccCccCCCCCCCCCeeeecCCceeeecCCCcccCC
Q psy2857         239 RVDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDP  275 (332)
Q Consensus       239 ~~~~~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~  275 (332)
                      ++|||||...++..+++|+|++|+|.|.|++||++++
T Consensus         2 CvDidEC~~~~~~~~~~C~Nt~Gsy~C~C~~Gy~~~g   38 (43)
T d1emoa1           2 AVDMDECKEPDVCKHGQCINTDGSYRCECPFGYILAG   38 (43)
T ss_dssp             CCCCCSSSSTTSCSSSCCCCCSSCCCCCCCTTEEESS
T ss_pred             CcceeccCCcCCCCCCEeECCCCCeEeECCCCcccCC
Confidence            6799999887777789999999999999999999864

>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=3.3e-09  Score=58.89  Aligned_cols=36  Identities=44%  Similarity=1.045  Sum_probs=33.5

Q ss_pred             CCcCCCCCCCCCCeeeeCCCCeEeeCCCCCccCCCC
Q psy2857          19 INECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQ   54 (332)
Q Consensus        19 ~~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~g~~~~   54 (332)
                      ||+|.++||.++|+|++..++|.|.|++||+|..++
T Consensus         1 Id~C~~~PC~n~g~C~~~~~~y~C~C~~G~~G~~Ce   36 (39)
T d2vj3a2           1 VNECVSNPCQNDATCLDQIGEFQCICMPGYEGVHCE   36 (39)
T ss_dssp             CCTTTTCCCCSSCEEEECSSCEEEECCTTEESSSSC
T ss_pred             CcCCcCCCCCCCCEEECCCCCEEEeCCCCCccCcCe
Confidence            689999999999999999999999999999997654

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=3.1e-09  Score=60.82  Aligned_cols=42  Identities=26%  Similarity=0.585  Sum_probs=34.3

Q ss_pred             cccccccCCCCCCCCCCeeecCCCceeeeCCCCCCCCCCCCcccc
Q psy2857         280 SDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACE  324 (332)
Q Consensus       280 ~~~d~C~~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~~~c~  324 (332)
                      +|||||+.....|  ++.|+|+.|+|.|.|++||++...++ .|.
T Consensus         1 TDidEC~~~~~~c--~~~C~Nt~G~y~C~C~~Gy~l~~d~~-~C~   42 (43)
T d1uzka1           1 TDVNECLDPTTCI--SGNCVNTPGSYICDCPPDFELNPTRV-GCV   42 (43)
T ss_dssp             CCCCGGGSTTSSB--TSEEEEETTEEEEECCTTCEECTTSS-BEE
T ss_pred             CCccccCCCCcCc--CCEeECCCCCEEEecCCCCEECCCCC-ccc
Confidence            4899998754444  57999999999999999999987654 554

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=4.9e-09  Score=63.10  Aligned_cols=45  Identities=33%  Similarity=0.744  Sum_probs=36.0

Q ss_pred             cccccccCCCCCCCC------CCeeecCCCceeeeCCCCCCCCCCCCccccc
Q psy2857         280 SDIDECKALDKPCGL------RAICENTVPGFNCLCPKGYSGKPDAKVACEQ  325 (332)
Q Consensus       280 ~~~d~C~~~~~~C~~------~~~C~~~~g~~~C~C~~g~~g~~~~~~~c~~  325 (332)
                      .|||||....+.|..      .++|+|++|+|+|.|++||+++.+++ +|..
T Consensus         2 vDidEC~~~~~~c~~~~~~~c~~~C~Nt~GsY~C~C~~Gy~l~~d~~-tC~~   52 (53)
T d1apqa_           2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQEDRH-SCQA   52 (53)
T ss_dssp             CSCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTCEECTTSS-CEEC
T ss_pred             eecccccCCCCCcccCCCCCccCEeEcCCCCeEeECCCCCeECCCCC-ceec
Confidence            578999876666542      35899999999999999999888776 6753

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=2.3e-09  Score=61.19  Aligned_cols=38  Identities=37%  Similarity=0.637  Sum_probs=31.6

Q ss_pred             cccccccccCCCCCCCCCCeeecCCCceeeeCCCCCCCCC
Q psy2857         278 ACSDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKP  317 (332)
Q Consensus       278 ~C~~~d~C~~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~  317 (332)
                      +|.|||||+.....  .+++|+|++|+|.|.|++||++++
T Consensus         1 sCvDidEC~~~~~~--~~~~C~Nt~Gsy~C~C~~Gy~~~g   38 (43)
T d1emoa1           1 SAVDMDECKEPDVC--KHGQCINTDGSYRCECPFGYILAG   38 (43)
T ss_dssp             CCCCCCSSSSTTSC--SSSCCCCCSSCCCCCCCTTEEESS
T ss_pred             CCcceeccCCcCCC--CCCEeECCCCCeEeECCCCcccCC
Confidence            47899999864433  468999999999999999999853

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=8e-09  Score=55.94  Aligned_cols=34  Identities=35%  Similarity=0.891  Sum_probs=31.6

Q ss_pred             CccCCCCCCCCCeeeecCCceeeecCCCcccCCC
Q psy2857         243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPY  276 (332)
Q Consensus       243 ~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~  276 (332)
                      |+|.++||.++++|++..++|+|.|++||+|..+
T Consensus         1 d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~C   34 (35)
T d2vj3a3           1 DECASSPCLHNGRCLDKINEFQCECPTGFTGHLC   34 (35)
T ss_dssp             CTTTTCCSTTTCEEEECSSCEEEECCTTEESSSS
T ss_pred             CCCCCCCCCCCcEEECCCCCeEEECCCCCCCCCc
Confidence            5788999999999999999999999999999865

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=8.9e-09  Score=57.13  Aligned_cols=35  Identities=31%  Similarity=0.949  Sum_probs=32.6

Q ss_pred             CccCCCCCCCCCeeeecCCceeeecCCCcccCCCC
Q psy2857         243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQ  277 (332)
Q Consensus       243 ~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~  277 (332)
                      |+|.++||.++++|++..++|+|.|++||+|..++
T Consensus         1 D~C~~~PC~ngg~C~~~~~~y~C~C~~G~~G~~Ce   35 (39)
T d1xkba1           1 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE   35 (39)
T ss_dssp             CTTTTCCCCSSCEECCCSSSCCEECCTTEETTTTC
T ss_pred             CcCCCCCCCCCcEEECCCCCEEEECCCCCCcCcCe
Confidence            57889999999999999999999999999999775

>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Neurogenic locus notch homolog protein 1, Notch1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.9e-08  Score=54.43  Aligned_cols=34  Identities=35%  Similarity=0.891  Sum_probs=31.5

Q ss_pred             CcCCCCCCCCCCeeeeCCCCeEeeCCCCCccCCC
Q psy2857          20 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPY   53 (332)
Q Consensus        20 ~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~g~~~   53 (332)
                      |+|.++||.++|+|++..++|.|.|++||+|..+
T Consensus         1 d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~~C   34 (35)
T d2vj3a3           1 DECASSPCLHNGRCLDKINEFQCECPTGFTGHLC   34 (35)
T ss_dssp             CTTTTCCSTTTCEEEECSSCEEEECCTTEESSSS
T ss_pred             CCCCCCCCCCCcEEECCCCCeEEECCCCCCCCCc
Confidence            6899999999999999999999999999999754

>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.8e-08  Score=55.91  Aligned_cols=35  Identities=31%  Similarity=0.949  Sum_probs=32.4

Q ss_pred             CcCCCCCCCCCCeeeeCCCCeEeeCCCCCccCCCC
Q psy2857          20 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQ   54 (332)
Q Consensus        20 ~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~g~~~~   54 (332)
                      |+|.++||.++|+|++..++|.|.|++||+|..++
T Consensus         1 D~C~~~PC~ngg~C~~~~~~y~C~C~~G~~G~~Ce   35 (39)
T d1xkba1           1 DQCETSPCQNQGKCKDGLGEYTCTCLEGFEGKNCE   35 (39)
T ss_dssp             CTTTTCCCCSSCEECCCSSSCCEECCTTEETTTTC
T ss_pred             CcCCCCCCCCCcEEECCCCCEEEECCCCCCcCcCe
Confidence            68999999999999999999999999999998664

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=6.4e-09  Score=57.62  Aligned_cols=35  Identities=31%  Similarity=0.717  Sum_probs=30.3

Q ss_pred             ccccccCCCCCCCCCCeeecCCCceeeeCCCCCCCCCC
Q psy2857         281 DIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPD  318 (332)
Q Consensus       281 ~~d~C~~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~  318 (332)
                      |||||+. .++|.  +.|+|++|+|+|.|++||.+...
T Consensus         1 DidEC~~-~~~C~--~~C~N~~Gsy~C~C~~Gy~l~g~   35 (40)
T d1dx5i3           1 DIDECEN-GGFCS--GVCHNLPGTFECICGPDSALAGQ   35 (40)
T ss_dssp             ECCHHHH-CSSCS--SEEEECSSSEEEEECSSSSCEEE
T ss_pred             CccccCC-CcCcc--CEeeCCCCCeEeECCCCCeeCCC
Confidence            6899976 47885  79999999999999999998753

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=3.6e-08  Score=56.23  Aligned_cols=36  Identities=33%  Similarity=0.825  Sum_probs=30.2

Q ss_pred             ccCccCCCCCCCCCeeeecCCceeeecCCCcccCCC
Q psy2857         241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPY  276 (332)
Q Consensus       241 ~~~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~  276 (332)
                      |||||+......++.|+|++|+|+|.|++||.+...
T Consensus         2 DidEC~~~~~~c~~~C~Nt~G~y~C~C~~Gy~l~~d   37 (43)
T d1uzka1           2 DVNECLDPTTCISGNCVNTPGSYICDCPPDFELNPT   37 (43)
T ss_dssp             CCCGGGSTTSSBTSEEEEETTEEEEECCTTCEECTT
T ss_pred             CccccCCCCcCcCCEeECCCCCEEEecCCCCEECCC
Confidence            789997654445789999999999999999988753

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=2e-08  Score=55.75  Aligned_cols=35  Identities=23%  Similarity=0.775  Sum_probs=32.3

Q ss_pred             CccCCCCCCCCCeeeecCCceeeecCCCcccCCCC
Q psy2857         243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQ  277 (332)
Q Consensus       243 ~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~  277 (332)
                      +.|.++||.++++|++..++|+|.|++||+|..++
T Consensus         2 ~~C~~~pC~ngg~C~~~~~~~~C~C~~g~~G~~Ce   36 (39)
T d1g1ta2           2 AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCE   36 (39)
T ss_dssp             CCCCTTGGGGSEEEEEETTEEEEEECTTEESTTSC
T ss_pred             CcccCCcCCCCcEEECCCCCEEEeCCCCCcCcCcC
Confidence            46888999999999999999999999999999775

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2.3e-08  Score=56.27  Aligned_cols=41  Identities=37%  Similarity=0.938  Sum_probs=34.3

Q ss_pred             cccccCCCCCCCCCCeeecCCCceeeeCCCCCCCCCCCCcccccc
Q psy2857         282 IDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQE  326 (332)
Q Consensus       282 ~d~C~~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~~~c~~~  326 (332)
                      ||||+. +++|.  ++|+|+.|+|+|.|++||++.++.+ +|.+|
T Consensus         1 idEC~~-~~~C~--~~C~n~~Gsy~C~C~~Gy~L~~d~~-~C~ai   41 (41)
T d1i0ua2           1 IDECQD-PDTCS--QLCVNLEGGYKCQCEEGFQLDPHTK-ACKAV   41 (41)
T ss_dssp             CCTTTT-TTSCS--SCEECSSSCCEECCCTTEEECTTTC-CEEEC
T ss_pred             CccCCC-CCCCC--CEeECCCCCEEeECCCCCeECCCCC-ccccC
Confidence            688974 56784  6999999999999999999988776 68754

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.52  E-value=2e-08  Score=57.87  Aligned_cols=43  Identities=26%  Similarity=0.614  Sum_probs=30.9

Q ss_pred             cccccCCCCC-CCCCCeeecCCCceeeeCCCCCCCCCCCCccccc
Q psy2857         282 IDECKALDKP-CGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQ  325 (332)
Q Consensus       282 ~d~C~~~~~~-C~~~~~C~~~~g~~~C~C~~g~~g~~~~~~~c~~  325 (332)
                      ||||+...+. +.-.+.|+|+.|+|+|.|++||+...+++ +|..
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~gsy~C~C~~Gy~L~~d~~-tC~~   44 (45)
T d1nt0a3           1 VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQNKH-TCSA   44 (45)
T ss_dssp             CCTTC-------CCSSEEEEETTEEEEECCTTEEECTTSS-CEEE
T ss_pred             CcCCccCCCCcCCCCCEeecCCCCEEEeCCCCCEECCCCC-cccc
Confidence            6788764433 22257999999999999999999988776 6764

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=4.5e-08  Score=54.65  Aligned_cols=35  Identities=29%  Similarity=0.822  Sum_probs=32.1

Q ss_pred             CccCCCCCCCCCeeeecCCceeeecCCCcccCCCC
Q psy2857         243 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQ  277 (332)
Q Consensus       243 ~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~  277 (332)
                      +.|.++||.++++|++..++|+|.|++||+|..++
T Consensus         2 ~~C~~~pC~ngg~C~~~~~~y~C~C~~g~~G~~Ce   36 (40)
T d1g1sa2           2 ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECE   36 (40)
T ss_dssp             CCCCTTGGGGSEEEEECSSSEEEEECTTEESTTSC
T ss_pred             CcccCCcCCCCcEEECCCCCeEEeCCCCccCCCCC
Confidence            46888999999999999999999999999999765

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=3.6e-08  Score=56.10  Aligned_cols=34  Identities=41%  Similarity=1.144  Sum_probs=29.9

Q ss_pred             ccCCcCCCCC--CCCCCeeeeCCCCeEeeCCCCCccC
Q psy2857          17 VDINECQSNP--CGVNATCIDTQGSYSCVCKEHYTGD   51 (332)
Q Consensus        17 ~~~~~C~~~~--C~~~g~C~~~~g~~~C~C~~G~~g~   51 (332)
                      +|||||...+  |. ++.|+|+.|+|.|.|++||+++
T Consensus         1 TDidEC~~~~~~C~-~~~C~Nt~Gsy~C~C~~Gy~~~   36 (44)
T d1lmja1           1 TDIDECRISPDLCG-RGQCVNTPGDFECKCDEGYESG   36 (44)
T ss_dssp             CCCCTTTTCSSTTT-TSCEEEETTEEEECCCSSEEEC
T ss_pred             CcccccCCCCCCCC-CCEeEcCCCCeEEeCCCCCccC
Confidence            5899998765  64 6899999999999999999885

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=7.2e-08  Score=55.50  Aligned_cols=43  Identities=30%  Similarity=0.706  Sum_probs=33.8

Q ss_pred             cccccCCCCCC-CCCCeeecCCCceeeeCCCCCCCCCCCCccccc
Q psy2857         282 IDECKALDKPC-GLRAICENTVPGFNCLCPKGYSGKPDAKVACEQ  325 (332)
Q Consensus       282 ~d~C~~~~~~C-~~~~~C~~~~g~~~C~C~~g~~g~~~~~~~c~~  325 (332)
                      ||||+.....+ .-.+.|+|+.|+|+|.|++||+...+++ +|.+
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~Gsy~C~C~~Gy~l~~d~~-tC~D   44 (45)
T d1szba2           1 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRNKR-TCSE   44 (45)
T ss_dssp             CCTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEECTTSS-CEEE
T ss_pred             CcCCcCCCCCCCCCCCCCccCCCCeEEECCCCCeECCCCC-CccC
Confidence            67887655432 2367999999999999999999998876 5753

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=4.6e-08  Score=55.33  Aligned_cols=34  Identities=44%  Similarity=0.998  Sum_probs=28.9

Q ss_pred             cCCcCCCCC--CCCCCeeeeCCCCeEeeCCCCCccCC
Q psy2857          18 DINECQSNP--CGVNATCIDTQGSYSCVCKEHYTGDP   52 (332)
Q Consensus        18 ~~~~C~~~~--C~~~g~C~~~~g~~~C~C~~G~~g~~   52 (332)
                      |||||...+  |. ++.|+|+.|+|+|.|++||+...
T Consensus         1 DidEC~~~~~~C~-~~~C~Nt~Gsy~C~C~~Gy~l~~   36 (42)
T d1lmja2           1 DIDECQRDPLLCR-GGVCHNTEGSYRCECPPGHQLSP   36 (42)
T ss_dssp             ECCHHHHCSSTTT-TSEEEEETTEEEEESCTTSCCCS
T ss_pred             CccccCCCCCCCC-CCEeECCCCCeEEeCCCCCeECc
Confidence            688887766  64 78999999999999999998654

>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=6.1e-08  Score=53.76  Aligned_cols=35  Identities=23%  Similarity=0.775  Sum_probs=32.1

Q ss_pred             CcCCCCCCCCCCeeeeCCCCeEeeCCCCCccCCCC
Q psy2857          20 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQ   54 (332)
Q Consensus        20 ~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~g~~~~   54 (332)
                      ++|.++||.++|+|++..++|.|.|++||+|..++
T Consensus         2 ~~C~~~pC~ngg~C~~~~~~~~C~C~~g~~G~~Ce   36 (39)
T d1g1ta2           2 AACTNTSCSGHGECVETINNYTCKCDPGFSGLKCE   36 (39)
T ss_dssp             CCCCTTGGGGSEEEEEETTEEEEEECTTEESTTSC
T ss_pred             CcccCCcCCCCcEEECCCCCEEEeCCCCCcCcCcC
Confidence            57999999999999999999999999999997654

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=3.3e-07  Score=51.35  Aligned_cols=33  Identities=24%  Similarity=0.703  Sum_probs=28.7

Q ss_pred             cCCCCCCCCCeeeecC--CceeeecCCCcccCCCC
Q psy2857         245 CQSNPCGVNATCIDTQ--GSYSCVCKEHYTGDPYQ  277 (332)
Q Consensus       245 C~~~~C~~~~~C~~~~--~~~~C~C~~G~~g~~~~  277 (332)
                      |.++||.++++|++..  ++|+|+|++||+|..++
T Consensus         1 C~~nPC~ngG~C~~~~~~~~y~C~C~~g~~G~~Ce   35 (41)
T d1tpga1           1 CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCE   35 (41)
T ss_dssp             CSSCCSCTTCEEEEESSSSCEEEECCTTCBSSSCC
T ss_pred             CcCCCCCCCCEEecCCCCCCeEECCCCCCCCCCcC
Confidence            5578999999999753  57999999999999887

>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: E-selectin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.1e-07  Score=52.95  Aligned_cols=35  Identities=29%  Similarity=0.822  Sum_probs=32.0

Q ss_pred             CcCCCCCCCCCCeeeeCCCCeEeeCCCCCccCCCC
Q psy2857          20 NECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQ   54 (332)
Q Consensus        20 ~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~g~~~~   54 (332)
                      +.|.++||.++|+|++..++|.|.|++||+|..++
T Consensus         2 ~~C~~~pC~ngg~C~~~~~~y~C~C~~g~~G~~Ce   36 (40)
T d1g1sa2           2 ASCQDMSCSKQGECLETIGNYTCSCYPGFYGPECE   36 (40)
T ss_dssp             CCCCTTGGGGSEEEEECSSSEEEEECTTEESTTSC
T ss_pred             CcccCCcCCCCcEEECCCCCeEEeCCCCccCCCCC
Confidence            57999999999999999999999999999997654

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.9e-07  Score=54.08  Aligned_cols=36  Identities=42%  Similarity=0.779  Sum_probs=32.3

Q ss_pred             ccCccCCCCCCCCCeeeecCCceeeecCCCcccCCCC
Q psy2857         241 DINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQ  277 (332)
Q Consensus       241 ~~~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~  277 (332)
                      ..++|.++||.+ ++|++..++|+|.|++||+|..++
T Consensus         7 ~~~~C~~~PC~n-G~C~~~~~~y~C~C~~G~~G~~Ce   42 (48)
T d1autl1           7 LEHPCASLCCGH-GTCIDGIGSFSCDCRSGWEGRFCQ   42 (48)
T ss_dssp             SCCSSSSTTTTS-EEECCCSSCCCEEECTTEESTTSC
T ss_pred             CCCcccCCCCCC-CEEECCCCCCeEeCCCCCcCCCcc
Confidence            346899999976 899999999999999999999876

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=98.27  E-value=3.4e-07  Score=51.57  Aligned_cols=36  Identities=28%  Similarity=0.743  Sum_probs=31.6

Q ss_pred             cCccCCCCCCCCCeeeec-CCceeeecCC-CcccCCCC
Q psy2857         242 INECQSNPCGVNATCIDT-QGSYSCVCKE-HYTGDPYQ  277 (332)
Q Consensus       242 ~~~C~~~~C~~~~~C~~~-~~~~~C~C~~-G~~g~~~~  277 (332)
                      +|+|.++||.++++|++. .++|+|.|+. ||+|..++
T Consensus         2 id~C~~nPC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce   39 (42)
T d1q4ga2           2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCT   39 (42)
T ss_dssp             CCGGGGCCCCTTCEEEEETTTEEEEECTTSSEETTTTC
T ss_pred             CccCcCCCCCCCCEeeeCCCCCEEEECCCCCcCCcCcC
Confidence            578999999999999875 6899999986 99999765

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=4.1e-07  Score=54.40  Aligned_cols=36  Identities=31%  Similarity=0.667  Sum_probs=28.1

Q ss_pred             cccCccCCC--C------CCCCCeeeecCCceeeecCCCcccCC
Q psy2857         240 VDINECQSN--P------CGVNATCIDTQGSYSCVCKEHYTGDP  275 (332)
Q Consensus       240 ~~~~~C~~~--~------C~~~~~C~~~~~~~~C~C~~G~~g~~  275 (332)
                      +|||||...  .      +...+.|+|++|+|+|.|++||++..
T Consensus         2 vDidEC~~~~~~c~~~~~~~c~~~C~Nt~GsY~C~C~~Gy~l~~   45 (53)
T d1apqa_           2 VDLDECASRSKSGEEDPQPQCQHLCHNYVGGYFCSCRPGYELQE   45 (53)
T ss_dssp             CSCCTTTCSTTTCCCSSSCTTSSEEEEETTEEEEECSTTCEECT
T ss_pred             eecccccCCCCCcccCCCCCccCEeEcCCCCeEeECCCCCeECC
Confidence            478888652  2      23356899999999999999999764

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.24  E-value=5.8e-08  Score=53.91  Aligned_cols=31  Identities=29%  Similarity=0.743  Sum_probs=27.4

Q ss_pred             CCCCCCCCCCeeecCCCceeeeCCCCCCCCC
Q psy2857         287 ALDKPCGLRAICENTVPGFNCLCPKGYSGKP  317 (332)
Q Consensus       287 ~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~  317 (332)
                      ...+.|..++.|+|++|+|.|.|++||+|+.
T Consensus         4 ~~~~~C~~~A~C~Nt~Gsy~C~C~~Gy~GdG   34 (40)
T d1gl4a2           4 NNRHQCSVHAECRDYATGFCCRCVANYTGNG   34 (40)
T ss_dssp             HHGGGSCTTEEEEECSSCEEEEECTTEEECS
T ss_pred             CCCCCCCCCCEeecCCCCeEeECCCCCcCCC
Confidence            3456888899999999999999999999984

>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=3e-07  Score=53.16  Aligned_cols=37  Identities=41%  Similarity=0.770  Sum_probs=32.8

Q ss_pred             ccCCcCCCCCCCCCCeeeeCCCCeEeeCCCCCccCCCC
Q psy2857          17 VDINECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQ   54 (332)
Q Consensus        17 ~~~~~C~~~~C~~~g~C~~~~g~~~C~C~~G~~g~~~~   54 (332)
                      ..+++|.++||. ||+|++..++|.|.|++||+|..++
T Consensus         6 p~~~~C~~~PC~-nG~C~~~~~~y~C~C~~G~~G~~Ce   42 (48)
T d1autl1           6 PLEHPCASLCCG-HGTCIDGIGSFSCDCRSGWEGRFCQ   42 (48)
T ss_dssp             SSCCSSSSTTTT-SEEECCCSSCCCEEECTTEESTTSC
T ss_pred             CCCCcccCCCCC-CCEEECCCCCCeEeCCCCCcCCCcc
Confidence            346899999997 5999999999999999999998764

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=2e-07  Score=52.90  Aligned_cols=39  Identities=44%  Similarity=0.870  Sum_probs=32.6

Q ss_pred             CCcccccCCCCCCCCCCceeeCCCCeeeeCCCCCCCCCCC
Q psy2857          57 SDIDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDA   96 (332)
Q Consensus        57 ~~~~~c~~~~~~C~~~~~C~~~~~~~~C~C~~g~~~~~~~   96 (332)
                      +|||||...+..|. ++.|+|+.|+|.|.|.+||.+....
T Consensus         1 qDinEC~~~~~~c~-~~~C~Nt~Gsy~C~C~~Gy~l~~~~   39 (43)
T d1uzka2           1 EDIDECQELPGLCQ-GGKCINTFGSFQCRCPTGYYLNEDT   39 (43)
T ss_dssp             EECCHHHHCGGGGB-TSEEEECSSCEEEECCTTCCBCTTT
T ss_pred             CCcccccCCCCCcC-CCEEECCCCCeEeECCCCCeECcCC
Confidence            36899987777785 5799999999999999999987543

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=7.3e-07  Score=50.01  Aligned_cols=39  Identities=38%  Similarity=0.947  Sum_probs=31.6

Q ss_pred             ccccC-CCCCCCCCCeeecCCCceeeeCCCCCCCCCCCCcccc
Q psy2857         283 DECKA-LDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACE  324 (332)
Q Consensus       283 d~C~~-~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~~~c~  324 (332)
                      |||+. ..++|.  .+|+|++|+|+|.|++||++..+.+ +|.
T Consensus         1 dEC~~~~~~~C~--~~C~n~~Gsy~C~C~~Gy~L~~d~~-tC~   40 (42)
T d1nzia2           1 NECTDFVDVPCS--HFCNNFIGGYFCSCPPEYFLHDDMK-NCG   40 (42)
T ss_dssp             CTTTC-CCCCSS--SEEEEETTEEEEECCTTCEECTTSS-CEE
T ss_pred             CCCCCCCCcCCC--CEeecCCCCEEEeCCCCCEECCCCC-eec
Confidence            56764 335785  6999999999999999999998876 665

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.15  E-value=9.8e-07  Score=49.33  Aligned_cols=35  Identities=34%  Similarity=0.832  Sum_probs=30.6

Q ss_pred             CccCCCCCCCCCeeeec-CCceeeecC-CCcccCCCC
Q psy2857         243 NECQSNPCGVNATCIDT-QGSYSCVCK-EHYTGDPYQ  277 (332)
Q Consensus       243 ~~C~~~~C~~~~~C~~~-~~~~~C~C~-~G~~g~~~~  277 (332)
                      |+|.++||.++++|++. .++|+|.|+ +||+|..++
T Consensus         2 d~C~~~PC~ngG~C~~~~~~~y~C~C~~~gy~G~~Ce   38 (41)
T d1cvua2           2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT   38 (41)
T ss_dssp             CTTTTCCCCTTCEEEEEETTEEEEECTTSSEETTTTC
T ss_pred             CcCcCCCCCCCCEEEECCCCCEEEeCcCCCcCCcCcC
Confidence            57889999999999875 688999996 699999765

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.14  E-value=7.5e-07  Score=51.08  Aligned_cols=35  Identities=23%  Similarity=0.634  Sum_probs=25.4

Q ss_pred             cCccCCC---CCCCCCeeeecCCceeeecCCCcccCCC
Q psy2857         242 INECQSN---PCGVNATCIDTQGSYSCVCKEHYTGDPY  276 (332)
Q Consensus       242 ~~~C~~~---~C~~~~~C~~~~~~~~C~C~~G~~g~~~  276 (332)
                      ||||+..   .....+.|+|++++|+|.|++||++...
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~gsy~C~C~~Gy~L~~d   38 (45)
T d1nt0a3           1 VDECRTSLGDSVPCDHYCHNYLGGYYCSCRVGYILHQN   38 (45)
T ss_dssp             CCTTC-------CCSSEEEEETTEEEEECCTTEEECTT
T ss_pred             CcCCccCCCCcCCCCCEeecCCCCEEEeCCCCCEECCC
Confidence            4677653   2334679999999999999999987643

>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=98.14  E-value=6.1e-07  Score=50.49  Aligned_cols=36  Identities=28%  Similarity=0.743  Sum_probs=31.8

Q ss_pred             CCcCCCCCCCCCCeeeeC-CCCeEeeCCC-CCccCCCC
Q psy2857          19 INECQSNPCGVNATCIDT-QGSYSCVCKE-HYTGDPYQ   54 (332)
Q Consensus        19 ~~~C~~~~C~~~g~C~~~-~g~~~C~C~~-G~~g~~~~   54 (332)
                      ||+|.++||.++|+|++. .++|.|.|.. ||+|..++
T Consensus         2 id~C~~nPC~ngG~C~~~~~~~y~C~C~~~G~~G~~Ce   39 (42)
T d1q4ga2           2 VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGPNCT   39 (42)
T ss_dssp             CCGGGGCCCCTTCEEEEETTTEEEEECTTSSEETTTTC
T ss_pred             CccCcCCCCCCCCEeeeCCCCCEEEECCCCCcCCcCcC
Confidence            789999999999999985 6789999986 99997664

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=4.1e-07  Score=50.18  Aligned_cols=32  Identities=28%  Similarity=0.837  Sum_probs=26.6

Q ss_pred             ccCccCC-CCCCCCCeeeecCCceeeecCCCcccC
Q psy2857         241 DINECQS-NPCGVNATCIDTQGSYSCVCKEHYTGD  274 (332)
Q Consensus       241 ~~~~C~~-~~C~~~~~C~~~~~~~~C~C~~G~~g~  274 (332)
                      |||||+. .+|  .+.|+|++|+|+|.|++||++.
T Consensus         1 DidEC~~~~~C--~~~C~N~~Gsy~C~C~~Gy~l~   33 (40)
T d1dx5i3           1 DIDECENGGFC--SGVCHNLPGTFECICGPDSALA   33 (40)
T ss_dssp             ECCHHHHCSSC--SSEEEECSSSEEEEECSSSSCE
T ss_pred             CccccCCCcCc--cCEeeCCCCCeEeECCCCCeeC
Confidence            5788864 455  4799999999999999999875

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1.3e-06  Score=50.05  Aligned_cols=35  Identities=29%  Similarity=0.684  Sum_probs=27.1

Q ss_pred             cCccCCCC---CCCCCeeeecCCceeeecCCCcccCCC
Q psy2857         242 INECQSNP---CGVNATCIDTQGSYSCVCKEHYTGDPY  276 (332)
Q Consensus       242 ~~~C~~~~---C~~~~~C~~~~~~~~C~C~~G~~g~~~  276 (332)
                      ||||+..+   +...+.|+|++|+|+|.|++||.+...
T Consensus         1 IdEC~~~~~~~~~C~~~C~Nt~Gsy~C~C~~Gy~l~~d   38 (45)
T d1szba2           1 IDECQVAPGEAPTCDHHCHNHLGGFYCSCRAGYVLHRN   38 (45)
T ss_dssp             CCTTCCCTTSCCSSSSEEEEETTEEEEECCTTEEECTT
T ss_pred             CcCCcCCCCCCCCCCCCCccCCCCeEEECCCCCeECCC
Confidence            46776532   234679999999999999999997643

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=1.3e-06  Score=48.88  Aligned_cols=40  Identities=40%  Similarity=0.937  Sum_probs=32.9

Q ss_pred             CCCCCCCCCCCCCCceecCCCceEeeCCCCCccCCCCccccc
Q psy2857         142 VDECQLGDPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCKD  183 (332)
Q Consensus       142 ~~~C~~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~~c~~  183 (332)
                      ++||+.+..|.  ..|+|+.++|.|.|++||.+.....+|++
T Consensus         1 idEC~~~~~C~--~~C~n~~Gsy~C~C~~Gy~L~~d~~~C~a   40 (41)
T d1i0ua2           1 IDECQDPDTCS--QLCVNLEGGYKCQCEEGFQLDPHTKACKA   40 (41)
T ss_dssp             CCTTTTTTSCS--SCEECSSSCCEECCCTTEEECTTTCCEEE
T ss_pred             CccCCCCCCCC--CEeECCCCCEEeECCCCCeECCCCCcccc
Confidence            46787556664  58999999999999999999887777764

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=8.3e-07  Score=49.25  Aligned_cols=38  Identities=29%  Similarity=0.882  Sum_probs=31.7

Q ss_pred             cccccCCCCCCCCCCeeecCCCceeeeCCCCCCCCCCCCccc
Q psy2857         282 IDECKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVAC  323 (332)
Q Consensus       282 ~d~C~~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~~~c  323 (332)
                      +|||....+.|.  .+|+|++++|+|.|++||+.. +.+ +|
T Consensus         2 ~neC~~~nggC~--h~C~n~~g~~~C~C~~Gy~L~-d~~-tC   39 (40)
T d3bpse1           2 TNECLDNNGGCS--HVCNDLKIGYECLCPDGFQLV-AQR-RC   39 (40)
T ss_dssp             SCGGGTGGGGCS--SEEEECSSSEEEECCTTCCEE-TTT-EE
T ss_pred             cccCCCCCCCCc--CEEEcCCCCEEEECCCCCEEC-CCC-cC
Confidence            588988778885  699999999999999999985 433 45

>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (tissue-type), t-PA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=2.8e-06  Score=47.43  Aligned_cols=33  Identities=24%  Similarity=0.693  Sum_probs=28.7

Q ss_pred             CCCCCCCCCCeeeeC--CCCeEeeCCCCCccCCCC
Q psy2857          22 CQSNPCGVNATCIDT--QGSYSCVCKEHYTGDPYQ   54 (332)
Q Consensus        22 C~~~~C~~~g~C~~~--~g~~~C~C~~G~~g~~~~   54 (332)
                      |.++||.++|+|++.  .++|.|+|++||+|..++
T Consensus         1 C~~nPC~ngG~C~~~~~~~~y~C~C~~g~~G~~Ce   35 (41)
T d1tpga1           1 CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGKSCE   35 (41)
T ss_dssp             CSSCCSCTTCEEEEESSSSCEEEECCTTCBSSSCC
T ss_pred             CcCCCCCCCCEEecCCCCCCeEECCCCCCCCCCcC
Confidence            678899999999986  457999999999998775

>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Prostaglandin H2 synthase-1, EGF-like module
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.97  E-value=2.9e-06  Score=47.31  Aligned_cols=35  Identities=34%  Similarity=0.832  Sum_probs=30.7

Q ss_pred             CcCCCCCCCCCCeeeeC-CCCeEeeCC-CCCccCCCC
Q psy2857          20 NECQSNPCGVNATCIDT-QGSYSCVCK-EHYTGDPYQ   54 (332)
Q Consensus        20 ~~C~~~~C~~~g~C~~~-~g~~~C~C~-~G~~g~~~~   54 (332)
                      |+|.++||.++|+|++. .++|.|.|. +||+|..++
T Consensus         2 d~C~~~PC~ngG~C~~~~~~~y~C~C~~~gy~G~~Ce   38 (41)
T d1cvua2           2 NPCCSNPCQNRGECMSTGFDQYKCDCTRTGFYGENCT   38 (41)
T ss_dssp             CTTTTCCCCTTCEEEEEETTEEEEECTTSSEETTTTC
T ss_pred             CcCcCCCCCCCCEEEECCCCCEEEeCcCCCcCCcCcC
Confidence            78999999999999986 678999996 699998664

>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-like domain of nidogen-1
domain: EGF-like domain of nidogen-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.97  E-value=1.7e-06  Score=47.78  Aligned_cols=29  Identities=34%  Similarity=0.830  Sum_probs=25.9

Q ss_pred             CCCCCCCeeeecCCceeeecCCCcccCCC
Q psy2857         248 NPCGVNATCIDTQGSYSCVCKEHYTGDPY  276 (332)
Q Consensus       248 ~~C~~~~~C~~~~~~~~C~C~~G~~g~~~  276 (332)
                      +.|..++.|+|++++|.|+|++||+|++.
T Consensus         7 ~~C~~~A~C~Nt~Gsy~C~C~~Gy~GdG~   35 (40)
T d1gl4a2           7 HQCSVHAECRDYATGFCCRCVANYTGNGR   35 (40)
T ss_dssp             GGSCTTEEEEECSSCEEEEECTTEEECSS
T ss_pred             CCCCCCCEeecCCCCeEeECCCCCcCCCC
Confidence            45778899999999999999999999863

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=2.6e-06  Score=47.21  Aligned_cols=36  Identities=28%  Similarity=0.609  Sum_probs=27.9

Q ss_pred             cCccCCCCCCCCCeeeecCCceeeecCCCcccCCCC
Q psy2857         242 INECQSNPCGVNATCIDTQGSYSCVCKEHYTGDPYQ  277 (332)
Q Consensus       242 ~~~C~~~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~  277 (332)
                      +|||....-.....|++++++|+|.|++||++....
T Consensus         2 ~neC~~~nggC~h~C~n~~g~~~C~C~~Gy~L~d~~   37 (40)
T d3bpse1           2 TNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQR   37 (40)
T ss_dssp             SCGGGTGGGGCSSEEEECSSSEEEECCTTCCEETTT
T ss_pred             cccCCCCCCCCcCEEEcCCCCEEEECCCCCEECCCC
Confidence            467766544446799999999999999999875433

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=8.6e-06  Score=42.13  Aligned_cols=33  Identities=42%  Similarity=1.150  Sum_probs=28.5

Q ss_pred             ccccCCCCCCCCCCeeecCCCceeeeCCCCCCCCC
Q psy2857         283 DECKALDKPCGLRAICENTVPGFNCLCPKGYSGKP  317 (332)
Q Consensus       283 d~C~~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~  317 (332)
                      |+|+.+ ++|. +++|.|..|+|.|.|.+||...+
T Consensus         2 dECsig-npCG-nGTCtNviGgFec~C~~GFepgp   34 (39)
T d1emoa2           2 DECSVG-NPCG-NGTCKNVIGGFECTCEEGFEPGP   34 (39)
T ss_dssp             CGGGTT-CSSS-SSCEEECSSSEEECCSSSSCCCS
T ss_pred             CccccC-CccC-CceeeecccceEEeecCCcCCCc
Confidence            788875 7998 56899999999999999998764

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=3.4e-06  Score=52.27  Aligned_cols=37  Identities=22%  Similarity=0.522  Sum_probs=31.7

Q ss_pred             ccCccCCCCCCCCCeee-----ecCCceeeecCCCcccCCCC
Q psy2857         241 DINECQSNPCGVNATCI-----DTQGSYSCVCKEHYTGDPYQ  277 (332)
Q Consensus       241 ~~~~C~~~~C~~~~~C~-----~~~~~~~C~C~~G~~g~~~~  277 (332)
                      +.++|.+++|.++++|+     +..++|+|.|++||+|..|+
T Consensus         5 ~c~ec~~~~C~NgG~C~~~~~~~~~~~y~C~C~~gy~G~~Ce   46 (63)
T d1haea_           5 KCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT   46 (63)
T ss_dssp             ECCHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSC
T ss_pred             cCCCCcCCcCCCCCEEeecccccCCCCEEeECCCCCCCCCcC
Confidence            44678889999999995     45678999999999999886

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=2.8e-05  Score=43.35  Aligned_cols=38  Identities=29%  Similarity=0.617  Sum_probs=29.4

Q ss_pred             CCCCCC--CCCCCCCceecCCCceEeeCCCCCccCCCCcccc
Q psy2857         143 DECQLG--DPCGPQAQCTNTPGSFRCDCVEGYVGAPPRIKCK  182 (332)
Q Consensus       143 ~~C~~~--~~C~~~~~C~~~~~~~~C~C~~G~~g~~~~~~c~  182 (332)
                      +||+..  ..|.  ..|++++++|.|.|++||.+....++|.
T Consensus         1 dEC~~~~~~~C~--~~C~n~~Gsy~C~C~~Gy~L~~d~~tC~   40 (42)
T d1nzia2           1 NECTDFVDVPCS--HFCNNFIGGYFCSCPPEYFLHDDMKNCG   40 (42)
T ss_dssp             CTTTC-CCCCSS--SEEEEETTEEEEECCTTCEECTTSSCEE
T ss_pred             CCCCCCCCcCCC--CEeecCCCCEEEeCCCCCEECCCCCeec
Confidence            356522  3554  5899999999999999999988777765

>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heregulin-alpha, EGF-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=8e-06  Score=50.51  Aligned_cols=38  Identities=24%  Similarity=0.538  Sum_probs=32.0

Q ss_pred             ccCCcCCCCCCCCCCeee-----eCCCCeEeeCCCCCccCCCC
Q psy2857          17 VDINECQSNPCGVNATCI-----DTQGSYSCVCKEHYTGDPYQ   54 (332)
Q Consensus        17 ~~~~~C~~~~C~~~g~C~-----~~~g~~~C~C~~G~~g~~~~   54 (332)
                      ++.++|.+++|.++|+|+     +..++|.|.|++||+|..++
T Consensus         4 ~~c~ec~~~~C~NgG~C~~~~~~~~~~~y~C~C~~gy~G~~Ce   46 (63)
T d1haea_           4 VKCAEKEKTFCVNGGECFMVKDLSNPSRYLCKCQPGFTGARCT   46 (63)
T ss_dssp             EECCHHHHTTSCTTCEEEEEESSSSSCCEEEECCTTEESTTSC
T ss_pred             ccCCCCcCCcCCCCCEEeecccccCCCCEEeECCCCCCCCCcC
Confidence            456788899999999995     45578999999999998765

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=2.7e-05  Score=45.28  Aligned_cols=41  Identities=24%  Similarity=0.480  Sum_probs=32.3

Q ss_pred             ccCCCCCCCCCCeeecCCCceeeeCCCCCCCCCCCCcccccccc
Q psy2857         285 CKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQEKA  328 (332)
Q Consensus       285 C~~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~~~c~~~~~  328 (332)
                      |+...+.|.  .+|++++++|+|.|++||+...+.+ +|.++.+
T Consensus         2 C~~~NGgC~--~~C~~~~g~~~C~C~~Gy~L~~D~~-tC~~~~~   42 (50)
T d1autl2           2 CSLDNGGCT--HYCLEEVGWRRCSCAPGYKLGDDLL-QCHPAVK   42 (50)
T ss_dssp             SSSGGGGCS--SEEEECSSSEEEECCTTEEECTTSS-CEEECSS
T ss_pred             CCCCCCCcc--cEeecCCCCeEEECCCCCEECCCCC-ccccCCC
Confidence            333345674  7999999999999999999998876 8876544

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.47  E-value=5.8e-05  Score=44.49  Aligned_cols=35  Identities=29%  Similarity=0.611  Sum_probs=28.8

Q ss_pred             CccCCCCCCCCCeeee--cCCceeeecCCCcccCCCC
Q psy2857         243 NECQSNPCGVNATCID--TQGSYSCVCKEHYTGDPYQ  277 (332)
Q Consensus       243 ~~C~~~~C~~~~~C~~--~~~~~~C~C~~G~~g~~~~  277 (332)
                      +.|.+++|.++++|+.  ...+|+|.|++||+|..++
T Consensus         7 ~~c~~~~C~NgG~C~~~~~~~~~~C~C~~gy~G~~Ce   43 (53)
T d3egfa_           7 PSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQ   43 (53)
T ss_dssp             CTTSSCCSCSSCEEEEESSSSCEEEECCTTCCSSSSC
T ss_pred             CCCCCCCCCCCcEeeccCCCCCeEeECCCCCcCCCCc
Confidence            3466689999999975  4458999999999999775

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=2.3e-05  Score=45.79  Aligned_cols=40  Identities=25%  Similarity=0.649  Sum_probs=32.2

Q ss_pred             ccCCCCCCCCCCeeecCCCceeeeCCCCCCCCCCCCccccccc
Q psy2857         285 CKALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQEK  327 (332)
Q Consensus       285 C~~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~~~c~~~~  327 (332)
                      |+...+.|.  .+|++++++|+|.|++||+...+.+ +|.++.
T Consensus         3 C~~~NGgC~--h~C~n~~g~~~C~C~~Gy~L~~D~~-tC~~~~   42 (51)
T d2p3ua1           3 CSLDNGDCD--QFCHEEQNSVVCSCARGYTLADNGK-ACIPTG   42 (51)
T ss_dssp             GGTGGGGCS--SEEEEETTEEEEECCTTEEECTTSS-CEEESS
T ss_pred             cCCCCCCcc--cEeecCCCCeEeEcCCCCEECCCCC-ccccCC
Confidence            444445674  6999999999999999999998776 887654

>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=8.3e-05  Score=38.38  Aligned_cols=34  Identities=41%  Similarity=1.088  Sum_probs=27.0

Q ss_pred             CcCCC-CCCCCCCeeeeCCCCeEeeCCCCCccCCCC
Q psy2857          20 NECQS-NPCGVNATCIDTQGSYSCVCKEHYTGDPYQ   54 (332)
Q Consensus        20 ~~C~~-~~C~~~g~C~~~~g~~~C~C~~G~~g~~~~   54 (332)
                      |+|.. +||+ +|+|.|..|+|.|.|..||..-+-.
T Consensus         2 dECsignpCG-nGTCtNviGgFec~C~~GFepgpmm   36 (39)
T d1emoa2           2 DECSVGNPCG-NGTCKNVIGGFECTCEEGFEPGPMM   36 (39)
T ss_dssp             CGGGTTCSSS-SSCEEECSSSEEECCSSSSCCCSSS
T ss_pred             CccccCCccC-CceeeecccceEEeecCCcCCCcce
Confidence            45554 5687 7899999999999999999865543

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=7.4e-05  Score=43.02  Aligned_cols=35  Identities=23%  Similarity=0.524  Sum_probs=28.9

Q ss_pred             CccCCCCCCCCCeeeec--CCceeeecCCCcccCCCC
Q psy2857         243 NECQSNPCGVNATCIDT--QGSYSCVCKEHYTGDPYQ  277 (332)
Q Consensus       243 ~~C~~~~C~~~~~C~~~--~~~~~C~C~~G~~g~~~~  277 (332)
                      ++|.+++|.++|+|+..  ..+|+|.|++||+|..++
T Consensus         5 ~~c~~~~C~ngG~C~~~~~~~~~~C~C~~gy~G~~Ce   41 (48)
T d1nqlb_           5 PLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQ   41 (48)
T ss_dssp             CSTTCCEECTTCEEEEETTTTEEEEEECTTEESTTSC
T ss_pred             CCCCCCCCCCCcEEeeeCCCCCeEEeCCCCcccCCCC
Confidence            35666889999999764  458999999999999775

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.31  E-value=3.4e-05  Score=45.13  Aligned_cols=40  Identities=23%  Similarity=0.558  Sum_probs=31.9

Q ss_pred             cCCCCCCCCCCeeecCCCceeeeCCCCCCCCCCCCcccccccc
Q psy2857         286 KALDKPCGLRAICENTVPGFNCLCPKGYSGKPDAKVACEQEKA  328 (332)
Q Consensus       286 ~~~~~~C~~~~~C~~~~g~~~C~C~~g~~g~~~~~~~c~~~~~  328 (332)
                      +...+.|.  .+|+++.++|+|.|++||+...+.+ +|.++.+
T Consensus         2 ~~~NGgC~--h~C~~~~~~~~C~C~~Gy~L~~D~~-tC~~~~~   41 (51)
T d1kigl_           2 SLDNGGCD--QFCREERSEVRCSCAHGYVLGDDSK-SCVSTER   41 (51)
T ss_dssp             CTTTTSSS--SCCCEETTEECCCCCTTEEECTTSS-CEEECSS
T ss_pred             CCCCCCcc--cEeEcCCCcEEeEcCCCCEECCCCC-ccccCCc
Confidence            34445674  6899999999999999999998876 8876654

>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.28  E-value=0.00018  Score=42.30  Aligned_cols=35  Identities=29%  Similarity=0.591  Sum_probs=28.9

Q ss_pred             CcCCCCCCCCCCeeeeC--CCCeEeeCCCCCccCCCC
Q psy2857          20 NECQSNPCGVNATCIDT--QGSYSCVCKEHYTGDPYQ   54 (332)
Q Consensus        20 ~~C~~~~C~~~g~C~~~--~g~~~C~C~~G~~g~~~~   54 (332)
                      ++|...+|.++|+|+..  ...|.|+|++||+|..++
T Consensus         7 ~~c~~~~C~NgG~C~~~~~~~~~~C~C~~gy~G~~Ce   43 (53)
T d3egfa_           7 PSSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQ   43 (53)
T ss_dssp             CTTSSCCSCSSCEEEEESSSSCEEEECCTTCCSSSSC
T ss_pred             CCCCCCCCCCCcEeeccCCCCCeEeECCCCCcCCCCc
Confidence            46777889999999854  458999999999997664

>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epidermal growth factor, EGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00013  Score=41.89  Aligned_cols=36  Identities=22%  Similarity=0.499  Sum_probs=29.4

Q ss_pred             CCcCCCCCCCCCCeeeeC--CCCeEeeCCCCCccCCCC
Q psy2857          19 INECQSNPCGVNATCIDT--QGSYSCVCKEHYTGDPYQ   54 (332)
Q Consensus        19 ~~~C~~~~C~~~g~C~~~--~g~~~C~C~~G~~g~~~~   54 (332)
                      .++|..++|.++|+|+..  ..+|.|.|..||+|..++
T Consensus         4 C~~c~~~~C~ngG~C~~~~~~~~~~C~C~~gy~G~~Ce   41 (48)
T d1nqlb_           4 CPLSHDGYCLHDGVCMYIEALDKYACNCVVGYIGERCQ   41 (48)
T ss_dssp             CCSTTCCEECTTCEEEEETTTTEEEEEECTTEESTTSC
T ss_pred             CCCCCCCCCCCCcEEeeeCCCCCeEEeCCCCcccCCCC
Confidence            356777889999999863  468999999999997654

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.0003  Score=40.66  Aligned_cols=38  Identities=26%  Similarity=0.687  Sum_probs=29.0

Q ss_pred             ccccCCCCCCCCCCeee------cCCCceeeeCCCCCCCCCCCCccc
Q psy2857         283 DECKALDKPCGLRAICE------NTVPGFNCLCPKGYSGKPDAKVAC  323 (332)
Q Consensus       283 d~C~~~~~~C~~~~~C~------~~~g~~~C~C~~g~~g~~~~~~~c  323 (332)
                      |+|....+.|.  ..|+      +..++|+|.|+.||+..++.+ +|
T Consensus         5 neC~~~NGGC~--h~Cl~~p~~~n~~~~y~C~C~~G~~L~~D~~-tC   48 (50)
T d1ijqa2           5 ERTTLSNGGCQ--YLCLPAPQINPHSPKFTCACPDGMLLARDMR-SC   48 (50)
T ss_dssp             SSSSSGGGGCS--SEEEECCCCSTTCCSEEEECCTTCEECTTSS-CE
T ss_pred             cccCCCCCCCc--CccCCCcCcccCCCCEEEeCCCCCEECCCCC-cc
Confidence            56666556674  6897      455799999999999998876 55

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.90  E-value=0.0004  Score=40.41  Aligned_cols=33  Identities=15%  Similarity=0.488  Sum_probs=27.3

Q ss_pred             CCeeeecCCceeeecCCCcccCCC-Ccccccccc
Q psy2857         253 NATCIDTQGSYSCVCKEHYTGDPY-QACSDIDEC  285 (332)
Q Consensus       253 ~~~C~~~~~~~~C~C~~G~~g~~~-~~C~~~d~C  285 (332)
                      ...|+++.++|+|.|++||.+... .+|.+++++
T Consensus         9 ~h~C~~~~~~~~C~C~~Gy~L~~D~~tC~~~~~~   42 (51)
T d1kigl_           9 DQFCREERSEVRCSCAHGYVLGDDSKSCVSTERF   42 (51)
T ss_dssp             SSCCCEETTEECCCCCTTEEECTTSSCEEECSSS
T ss_pred             ccEeEcCCCcEEeEcCCCCEECCCCCccccCCcc
Confidence            357999999999999999987654 568877776

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00069  Score=39.11  Aligned_cols=32  Identities=19%  Similarity=0.424  Sum_probs=25.8

Q ss_pred             CCeeeecCCceeeecCCCcccCCC-Cccccccc
Q psy2857         253 NATCIDTQGSYSCVCKEHYTGDPY-QACSDIDE  284 (332)
Q Consensus       253 ~~~C~~~~~~~~C~C~~G~~g~~~-~~C~~~d~  284 (332)
                      ...|++++++|+|.|++||++... .+|+.+++
T Consensus        10 ~~~C~~~~g~~~C~C~~Gy~L~~D~~tC~~~~~   42 (50)
T d1autl2          10 THYCLEEVGWRRCSCAPGYKLGDDLLQCHPAVK   42 (50)
T ss_dssp             SSEEEECSSSEEEECCTTEEECTTSSCEEECSS
T ss_pred             ccEeecCCCCeEEECCCCCEECCCCCccccCCC
Confidence            468999999999999999998754 55665554

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.0008  Score=39.01  Aligned_cols=32  Identities=28%  Similarity=0.531  Sum_probs=25.8

Q ss_pred             CCeeeecCCceeeecCCCcccCCC-Cccccccc
Q psy2857         253 NATCIDTQGSYSCVCKEHYTGDPY-QACSDIDE  284 (332)
Q Consensus       253 ~~~C~~~~~~~~C~C~~G~~g~~~-~~C~~~d~  284 (332)
                      ...|++++++|+|.|++||.+... .+|..+++
T Consensus        11 ~h~C~n~~g~~~C~C~~Gy~L~~D~~tC~~~~~   43 (51)
T d2p3ua1          11 DQFCHEEQNSVVCSCARGYTLADNGKACIPTGP   43 (51)
T ss_dssp             SSEEEEETTEEEEECCTTEEECTTSSCEEESSS
T ss_pred             ccEeecCCCCeEeEcCCCCEECCCCCccccCCc
Confidence            468999999999999999998754 55766554

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.00073  Score=40.15  Aligned_cols=41  Identities=27%  Similarity=0.701  Sum_probs=30.8

Q ss_pred             ccCCCCCCCCCCeeecCCC-ceeeeCCCCCCCCCCCCcccccccc
Q psy2857         285 CKALDKPCGLRAICENTVP-GFNCLCPKGYSGKPDAKVACEQEKA  328 (332)
Q Consensus       285 C~~~~~~C~~~~~C~~~~g-~~~C~C~~g~~g~~~~~~~c~~~~~  328 (332)
                      |+...+.|.  .+|+++.+ +|+|.|++||....+.+ +|.++.+
T Consensus         3 C~~~NGgC~--h~C~~~~~~~~~C~C~~Gy~L~~D~~-tC~~~~~   44 (57)
T d1rfnb_           3 CNIKNGRCE--QFCKNSADNKVVCSCTEGYRLAENQK-SCEPAVP   44 (57)
T ss_dssp             TTGGGGGCS--SEEEECTTSCEEEECCTTEEECTTSS-SEEECSS
T ss_pred             cCCCCCCcc--cEeeeCCCCCeEeECCCCCEECCCCC-ccccCCC
Confidence            333345674  79999864 89999999999988776 8886543

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0014  Score=38.25  Aligned_cols=40  Identities=25%  Similarity=0.583  Sum_probs=29.5

Q ss_pred             ccCCCCCCCCCCeeecCCC-ceeeeCCCCCCCCCCCCccccccc
Q psy2857         285 CKALDKPCGLRAICENTVP-GFNCLCPKGYSGKPDAKVACEQEK  327 (332)
Q Consensus       285 C~~~~~~C~~~~~C~~~~g-~~~C~C~~g~~g~~~~~~~c~~~~  327 (332)
                      |+...+.|.  ..|+++.+ +|+|.|+.||+...+.+ +|.+..
T Consensus         2 C~~~NGGC~--h~C~~~~~~~~~C~C~~Gy~L~~D~~-tC~~~~   42 (53)
T d2bz6l1           2 CVNENGGCE--QYCSDHTGTKRSCRCHEGYSLLADGV-SCTPTV   42 (53)
T ss_dssp             TTSGGGGCS--SEEEEETTTEEEEECCTTEEECTTSS-CEEECS
T ss_pred             CCCCCCCCc--CEeeeCCCCCEEeECCCCCEECCCCC-cccCCC
Confidence            333334564  68998876 58999999999998776 787543

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.0036  Score=35.17  Aligned_cols=30  Identities=27%  Similarity=0.511  Sum_probs=23.3

Q ss_pred             CCCCCCCCeee--ecCCceeeecCCCcccCCCC
Q psy2857         247 SNPCGVNATCI--DTQGSYSCVCKEHYTGDPYQ  277 (332)
Q Consensus       247 ~~~C~~~~~C~--~~~~~~~C~C~~G~~g~~~~  277 (332)
                      .+.|.+ |.|.  .....+.|.|++||+|++++
T Consensus        11 ~~yC~n-G~C~~~~~~~~~~C~C~~gY~G~RCe   42 (46)
T d1k36a_          11 NGYCLH-GQCIYLVDMSQNYCRCEVGYTGVRCE   42 (46)
T ss_dssp             CSSCSS-EEEEEETTTTEEEEEECTTCSSTTSC
T ss_pred             CCcCcC-CEEEEeCCCCccEeECCCCceecCce
Confidence            367876 6675  45568999999999999765

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.0088  Score=34.19  Aligned_cols=30  Identities=27%  Similarity=0.483  Sum_probs=24.6

Q ss_pred             CCCCCCCeee-ecCCceeeecCCCcccCCCC
Q psy2857         248 NPCGVNATCI-DTQGSYSCVCKEHYTGDPYQ  277 (332)
Q Consensus       248 ~~C~~~~~C~-~~~~~~~C~C~~G~~g~~~~  277 (332)
                      +.|.+++.|+ ...+.+.|.|+.||+|..|+
T Consensus        14 ~yC~nGgcc~~~~~~~~~C~C~~gy~G~rCe   44 (50)
T d1ioxa_          14 HYCIKGRCRFVVAEQTPSCVCDEGYIGARCE   44 (50)
T ss_dssp             TSCTTCCEEEETTTTEEEECCCTTEETTTTC
T ss_pred             CCccCCeEEEeCCCCCcEeECCCCCeeCCCc
Confidence            5788888884 55667999999999999765

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.013  Score=33.46  Aligned_cols=33  Identities=12%  Similarity=0.363  Sum_probs=22.1

Q ss_pred             CccCCCCCCCCCeee------ecCCceeeecCCCcccCC
Q psy2857         243 NECQSNPCGVNATCI------DTQGSYSCVCKEHYTGDP  275 (332)
Q Consensus       243 ~~C~~~~C~~~~~C~------~~~~~~~C~C~~G~~g~~  275 (332)
                      ++|....-.....|+      +..++|+|.|+.||++..
T Consensus         5 neC~~~NGGC~h~Cl~~p~~~n~~~~y~C~C~~G~~L~~   43 (50)
T d1ijqa2           5 ERTTLSNGGCQYLCLPAPQINPHSPKFTCACPDGMLLAR   43 (50)
T ss_dssp             SSSSSGGGGCSSEEEECCCCSTTCCSEEEECCTTCEECT
T ss_pred             cccCCCCCCCcCccCCCcCcccCCCCEEEeCCCCCEECC
Confidence            345433223346786      445799999999999875

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.65  E-value=0.0095  Score=33.86  Aligned_cols=30  Identities=20%  Similarity=0.420  Sum_probs=23.6

Q ss_pred             CCCCCCCeee-ecCCceeeecCCCcccCCCC
Q psy2857         248 NPCGVNATCI-DTQGSYSCVCKEHYTGDPYQ  277 (332)
Q Consensus       248 ~~C~~~~~C~-~~~~~~~C~C~~G~~g~~~~  277 (332)
                      +-|.+++.|. .....+.|.|++||+|.+|+
T Consensus        13 ~yClnGgcc~~~~~~~~~C~C~~gy~G~RCe   43 (49)
T d1moxc_          13 QFCFHGTCRFLVQEDKPACVCHSGYVGARCE   43 (49)
T ss_dssp             CSSTTEEEEEETTTTEEEEEECTTEESTTSC
T ss_pred             CEeeCCeEEecCCCCCcEeECCCCCEecCCc
Confidence            5677777773 44567999999999999765

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.03  Score=32.85  Aligned_cols=33  Identities=18%  Similarity=0.439  Sum_probs=24.9

Q ss_pred             CCeeeecCC-ceeeecCCCcccCCC-Ccccccccc
Q psy2857         253 NATCIDTQG-SYSCVCKEHYTGDPY-QACSDIDEC  285 (332)
Q Consensus       253 ~~~C~~~~~-~~~C~C~~G~~g~~~-~~C~~~d~C  285 (332)
                      ...|+++++ +|+|.|++||.+... .+|..+++.
T Consensus        11 ~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~~~~~f   45 (57)
T d1rfnb_          11 EQFCKNSADNKVVCSCTEGYRLAENQKSCEPAVPF   45 (57)
T ss_dssp             SSEEEECTTSCEEEECCTTEEECTTSSSEEECSSS
T ss_pred             ccEeeeCCCCCeEeECCCCCEECCCCCccccCCCc
Confidence            468998865 899999999998654 567766543

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.02  Score=29.54  Aligned_cols=28  Identities=21%  Similarity=0.621  Sum_probs=22.7

Q ss_pred             CCCCCeeeecC---CceeeecCCCcccCCCC
Q psy2857         250 CGVNATCIDTQ---GSYSCVCKEHYTGDPYQ  277 (332)
Q Consensus       250 C~~~~~C~~~~---~~~~C~C~~G~~g~~~~  277 (332)
                      |.++++|+...   +-.+|.||.+|.|.+++
T Consensus         4 ClNGG~Cvsyk~FS~I~rC~CPk~f~G~HCE   34 (40)
T d2i9aa1           4 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCE   34 (40)
T ss_dssp             CCTTCEEEECSSSTTCEEEECCTTEESTTSC
T ss_pred             cccCCEEEEEehhcCCEEecCCcccCceeEE
Confidence            67889998643   35689999999999886

>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Epiregulin, EGF-domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.13  E-value=0.022  Score=31.78  Aligned_cols=29  Identities=28%  Similarity=0.519  Sum_probs=22.4

Q ss_pred             CCCCCCCeeee--CCCCeEeeCCCCCccCCCC
Q psy2857          25 NPCGVNATCID--TQGSYSCVCKEHYTGDPYQ   54 (332)
Q Consensus        25 ~~C~~~g~C~~--~~g~~~C~C~~G~~g~~~~   54 (332)
                      ..|.+ |.|..  ....+.|.|++||+|+.++
T Consensus        12 ~yC~n-G~C~~~~~~~~~~C~C~~gY~G~RCe   42 (46)
T d1k36a_          12 GYCLH-GQCIYLVDMSQNYCRCEVGYTGVRCE   42 (46)
T ss_dssp             SSCSS-EEEEEETTTTEEEEEECTTCSSTTSC
T ss_pred             CcCcC-CEEEEeCCCCccEeECCCCceecCce
Confidence            46874 88864  3567999999999997654

>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Betacellulin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.75  E-value=0.025  Score=32.22  Aligned_cols=29  Identities=21%  Similarity=0.299  Sum_probs=23.8

Q ss_pred             CCCCCCCeee-cCCCceeeeCCCCCCCCCC
Q psy2857         290 KPCGLRAICE-NTVPGFNCLCPKGYSGKPD  318 (332)
Q Consensus       290 ~~C~~~~~C~-~~~g~~~C~C~~g~~g~~~  318 (332)
                      +.|.+++.|. .....+.|.|+.||+|..+
T Consensus        14 ~yC~nGgcc~~~~~~~~~C~C~~gy~G~rC   43 (50)
T d1ioxa_          14 HYCIKGRCRFVVAEQTPSCVCDEGYIGARC   43 (50)
T ss_dssp             TSCTTCCEEEETTTTEEEECCCTTEETTTT
T ss_pred             CCccCCeEEEeCCCCCcEeECCCCCeeCCC
Confidence            5799888884 5567789999999999844

>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Transforming growth factor alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.00  E-value=0.045  Score=30.94  Aligned_cols=29  Identities=21%  Similarity=0.275  Sum_probs=22.8

Q ss_pred             CCCCCCCeee-cCCCceeeeCCCCCCCCCC
Q psy2857         290 KPCGLRAICE-NTVPGFNCLCPKGYSGKPD  318 (332)
Q Consensus       290 ~~C~~~~~C~-~~~g~~~C~C~~g~~g~~~  318 (332)
                      +-|.+++.|. .....+.|.|+.||+|..+
T Consensus        13 ~yClnGgcc~~~~~~~~~C~C~~gy~G~RC   42 (49)
T d1moxc_          13 QFCFHGTCRFLVQEDKPACVCHSGYVGARC   42 (49)
T ss_dssp             CSSTTEEEEEETTTTEEEEEECTTEESTTS
T ss_pred             CEeeCCeEEecCCCCCcEeECCCCCEecCC
Confidence            5788888774 4456789999999999844

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.46  E-value=0.11  Score=29.81  Aligned_cols=28  Identities=32%  Similarity=0.653  Sum_probs=21.2

Q ss_pred             CCeeeecCC-ceeeecCCCcccCCC-Cccc
Q psy2857         253 NATCIDTQG-SYSCVCKEHYTGDPY-QACS  280 (332)
Q Consensus       253 ~~~C~~~~~-~~~C~C~~G~~g~~~-~~C~  280 (332)
                      ...|+++++ +|+|.|+.||.+... .+|.
T Consensus        10 ~h~C~~~~~~~~~C~C~~Gy~L~~D~~tC~   39 (53)
T d2bz6l1          10 EQYCSDHTGTKRSCRCHEGYSLLADGVSCT   39 (53)
T ss_dssp             SSEEEEETTTEEEEECCTTEEECTTSSCEE
T ss_pred             cCEeeeCCCCCEEeECCCCCEECCCCCccc
Confidence            367888876 689999999998654 3454

>d1jv2b4 g.3.11.6 (B:532-562) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.31  E-value=0.042  Score=26.95  Aligned_cols=24  Identities=25%  Similarity=0.652  Sum_probs=19.8

Q ss_pred             CCCCCCeeeeCCCCeEeeCCCCCccCCC
Q psy2857          26 PCGVNATCIDTQGSYSCVCKEHYTGDPY   53 (332)
Q Consensus        26 ~C~~~g~C~~~~g~~~C~C~~G~~g~~~   53 (332)
                      .|+.||.|.-..    |+|.+||+|+.+
T Consensus         4 ~C~ghG~C~CG~----C~C~~gw~G~~C   27 (31)
T d1jv2b4           4 MCSGHGQCSCGD----CLCDSDWTGYYC   27 (31)
T ss_dssp             CSCCCTTCCSTT----TCCCTTEESSSS
T ss_pred             eccCCCcccCCc----eEccCCcccccc
Confidence            488888887665    999999999765

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.09  E-value=0.19  Score=25.77  Aligned_cols=28  Identities=21%  Similarity=0.621  Sum_probs=22.5

Q ss_pred             CCCCCeeeeCC---CCeEeeCCCCCccCCCC
Q psy2857          27 CGVNATCIDTQ---GSYSCVCKEHYTGDPYQ   54 (332)
Q Consensus        27 C~~~g~C~~~~---g~~~C~C~~G~~g~~~~   54 (332)
                      |.++|+|+...   ....|.|+.+|.|..++
T Consensus         4 ClNGG~Cvsyk~FS~I~rC~CPk~f~G~HCE   34 (40)
T d2i9aa1           4 CLNGGTCVSNKYFSNIHWCNCPKKFGGQHCE   34 (40)
T ss_dssp             CCTTCEEEECSSSTTCEEEECCTTEESTTSC
T ss_pred             cccCCEEEEEehhcCCEEecCCcccCceeEE
Confidence            67889999863   46789999999997653

>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.78  E-value=0.078  Score=28.79  Aligned_cols=33  Identities=33%  Similarity=0.726  Sum_probs=24.1

Q ss_pred             CcCCCC---CCCCCCeeeeCCCCeEeeCC-CCCccCCCCCC
Q psy2857          20 NECQSN---PCGVNATCIDTQGSYSCVCK-EHYTGDPYQAC   56 (332)
Q Consensus        20 ~~C~~~---~C~~~g~C~~~~g~~~C~C~-~G~~g~~~~~C   56 (332)
                      +.|...   .|+.+|+|+-.    .|+|. +||.|..++.|
T Consensus         3 d~C~~~~g~iCng~G~C~cG----~C~C~~~gy~G~~Ce~C   39 (43)
T d1jv2b5           3 DTCMSSNGLLCSGRGKCECG----SCVCIQPGSYGDTCEKC   39 (43)
T ss_dssp             STTCCSSCSGGGGTEEEETT----EEEECCSSCBSTTSCBC
T ss_pred             cccCCCCCCEECCCCEEECC----EeEeCCCCccCCccccC
Confidence            345543   38899999876    49994 79999876543

>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.05  E-value=0.11  Score=27.47  Aligned_cols=39  Identities=23%  Similarity=0.712  Sum_probs=27.0

Q ss_pred             ccccccCCCCCCCCCCeeecC-CCceeeeCCCCCCCCCCCCccc
Q psy2857         281 DIDECKALDKPCGLRAICENT-VPGFNCLCPKGYSGKPDAKVAC  323 (332)
Q Consensus       281 ~~d~C~~~~~~C~~~~~C~~~-~g~~~C~C~~g~~g~~~~~~~c  323 (332)
                      .+|+|..  .+|.  -.|... .++|+|+|.+||...+....+|
T Consensus         3 ~vDPCf~--~~CE--~qCqP~~~~~Y~CiCaeGFaP~p~~PhrC   42 (43)
T d1dx5i1           3 PVDPCFR--ANCE--YQCQPLDQTSYLCVCAEGFAPIPHEPHRC   42 (43)
T ss_dssp             CCCGGGG--CCCS--SEEEECSSSCEEEECCTTEEEETTEEEEE
T ss_pred             ccccccC--CCcc--eeeeeCCCCcceEEeccccccCCCCcccC
Confidence            3677764  5675  568755 4589999999998776544333

>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.59  E-value=0.063  Score=28.94  Aligned_cols=22  Identities=23%  Similarity=0.588  Sum_probs=18.2

Q ss_pred             CCCeeeeCCCCeEeeCCCCCccCCCC
Q psy2857          29 VNATCIDTQGSYSCVCKEHYTGDPYQ   54 (332)
Q Consensus        29 ~~g~C~~~~g~~~C~C~~G~~g~~~~   54 (332)
                      .||+|+..    .|+|.+||+|..++
T Consensus        19 ~hG~C~~G----~C~C~~Gw~G~~Ce   40 (41)
T d1l3ya_          19 GRGLCFCG----KCRCHPGFEGSACQ   40 (41)
T ss_dssp             HHEEEETT----EEEECTTCCTTTTC
T ss_pred             CCCeEECC----EEEcCCCCcccCcc
Confidence            47999876    59999999998664

>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Heparin-binding epidermal growth factor, HBEGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.46  E-value=0.12  Score=27.79  Aligned_cols=24  Identities=25%  Similarity=0.638  Sum_probs=18.7

Q ss_pred             Ceeee--cCCceeeecCCCcccCCCC
Q psy2857         254 ATCID--TQGSYSCVCKEHYTGDPYQ  277 (332)
Q Consensus       254 ~~C~~--~~~~~~C~C~~G~~g~~~~  277 (332)
                      |+|.-  ....+.|.|..||+|.+++
T Consensus        13 G~C~~i~~l~~~~C~C~~gY~G~RCq   38 (41)
T d1xdtr_          13 GECKYVKELRAPSCICHPGYHGERCH   38 (41)
T ss_dssp             EEECCBGGGTBCCEEECTTEESTTCC
T ss_pred             cEEeecCcCCCceeECCCCCeecCcc
Confidence            77743  4456789999999999764

>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Integrin beta EGF-like domains
domain: Integrin beta EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.69  E-value=0.33  Score=26.23  Aligned_cols=26  Identities=31%  Similarity=0.574  Sum_probs=20.5

Q ss_pred             CCCCCCeeeecCCceeeecC-CCcccCCCCc
Q psy2857         249 PCGVNATCIDTQGSYSCVCK-EHYTGDPYQA  278 (332)
Q Consensus       249 ~C~~~~~C~~~~~~~~C~C~-~G~~g~~~~~  278 (332)
                      .|+.+++|+-.    +|+|. +||.|..++.
T Consensus        12 iCng~G~C~cG----~C~C~~~gy~G~~Ce~   38 (43)
T d1jv2b5          12 LCSGRGKCECG----SCVCIQPGSYGDTCEK   38 (43)
T ss_dssp             GGGGTEEEETT----EEEECCSSCBSTTSCB
T ss_pred             EECCCCEEECC----EeEeCCCCccCCcccc
Confidence            47888899764    89995 7999987653

>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.21  E-value=0.54  Score=27.01  Aligned_cols=32  Identities=22%  Similarity=0.564  Sum_probs=21.1

Q ss_pred             CCCCCeeee--cCCceee-ecCCCcccCCCCcccc
Q psy2857         250 CGVNATCID--TQGSYSC-VCKEHYTGDPYQACSD  281 (332)
Q Consensus       250 C~~~~~C~~--~~~~~~C-~C~~G~~g~~~~~C~~  281 (332)
                      |..++.|..  ..+...| .|++||+|..++.|.+
T Consensus         3 C~~~~~c~~~~~~~~~vC~~C~~~~~G~~Ce~C~~   37 (55)
T d1kloa1           3 CPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDD   37 (55)
T ss_dssp             SCTTCCEEECSSSCCEEECSCCTTEESTTSCEECT
T ss_pred             CcCCCccceeCCCCCEEcCCCCCCCccCcccccCC
Confidence            444555542  3455678 5999999998875543

>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: Laminin-type module
domain: Laminin gamma1 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.08  E-value=0.57  Score=26.91  Aligned_cols=33  Identities=24%  Similarity=0.623  Sum_probs=23.3

Q ss_pred             CCCCCCeeeeC--CCCeEe-eCCCCCccCCCCCCCC
Q psy2857          26 PCGVNATCIDT--QGSYSC-VCKEHYTGDPYQACSD   58 (332)
Q Consensus        26 ~C~~~g~C~~~--~g~~~C-~C~~G~~g~~~~~C~~   58 (332)
                      +|..+++|...  .+.+.| .|+.||+|..++.|.+
T Consensus         2 pC~~~~~c~~~~~~~~~vC~~C~~~~~G~~Ce~C~~   37 (55)
T d1kloa1           2 PCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDD   37 (55)
T ss_dssp             CSCTTCCEEECSSSCCEEECSCCTTEESTTSCEECT
T ss_pred             cCcCCCccceeCCCCCEEcCCCCCCCccCcccccCC
Confidence            35566776643  456778 5999999988876654