Psyllid ID: psy2909

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
MFSQNLVQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKPRLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVKQYWLQVIRDDGIAQTIIIYWNGDQAYNCIRTRE
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHcccccccHHHHHHccccccccHHHHHHHHHccccccccccccccccccccccccccEEEEccccEEEcccccccccccHHHHHHHHHcccccEEEEEcc
ccccccHHHHccccHHHHHHHccHHHHHHHHHHHHEEEEHHHHccccccEEEEEEcccHHHHHHHHcccccHHHHHcHHHccccccHHHHHHHHcccccccccccccccccEEEEHHHHHccccccHccccccEEEcccccccHHHEEEEEEcccccccEEEEcc
MFSQNLVQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNkegirwrhiefsdntlclqlvegkpngllcvlddqanwsrgnpmvSCVFWmikprlfaptpkplnglfeyvrkpdcliklelfpppvKQYWLQVIRDDGIAQTIIIYWNgdqayncirtre
mfsqnlvqQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKPRLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVKQYWLQVIRDDGIAQTIIIYWNGDQAYNCIRTRE
MFSQNLVQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKPRLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVKQYWLQVIRDDGIAQTIIIYWNGDQAYNCIRTRE
********QDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKPRLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVKQYWLQVIRDDGIAQTIIIYWNGDQAYNCI****
**SQNLVQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKPRLF************YVRKPDCLIKLELFPPPVKQYWLQVIRDDGIAQTIIIYWNGDQAYNCIRTR*
MFSQNLVQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKPRLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVKQYWLQVIRDDGIAQTIIIYWNGDQAYNCIRTRE
***QNLVQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKPRLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVKQYWLQVIRDDGIAQTIIIYWNGDQAYNCIRTR*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFSQNLVQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGNPMVSCVFWMIKPRLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVKQYWLQVIRDDGIAQTIIIYWNGDQAYNCIRTRE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query165 2.2.26 [Sep-21-2011]
Q13459 2157 Unconventional myosin-IXb yes N/A 0.412 0.031 0.588 6e-21
Q9Z1N3 2626 Unconventional myosin-IXa yes N/A 0.430 0.027 0.563 6e-21
Q8C170 2542 Unconventional myosin-IXa no N/A 0.430 0.027 0.563 7e-21
B2RTY4 2548 Unconventional myosin-IXa no N/A 0.430 0.027 0.563 7e-21
Q9QY06 2114 Unconventional myosin-IXb no N/A 0.412 0.032 0.573 8e-21
Q63358 1980 Unconventional myosin-IXb no N/A 0.412 0.034 0.573 1e-20
Q9UKN7 3530 Unconventional myosin-XV no N/A 0.393 0.018 0.630 4e-18
Q9QZZ4 3511 Unconventional myosin-XV no N/A 0.393 0.018 0.630 4e-18
Q9U1M8 2357 Myosin-I heavy chain OS=D yes N/A 0.448 0.031 0.5 8e-18
P54696 1771 Myosin-H heavy chain OS=D no N/A 0.466 0.043 0.493 1e-17
>sp|Q13459|MYO9B_HUMAN Unconventional myosin-IXb OS=Homo sapiens GN=MYO9B PE=1 SV=3 Back     alignment and function desciption
 Score =  100 bits (248), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 40/68 (58%), Positives = 52/68 (76%)

Query: 15  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 74
           FEQ CINYANE LQYYFNQH+F+ EQEEY  EGI W +I ++DN  C+ L+  KP GL  
Sbjct: 532 FEQFCINYANEQLQYYFNQHIFKLEQEEYQGEGITWHNIGYTDNVGCIHLISKKPTGLFY 591

Query: 75  VLDDQANW 82
           +LD+++N+
Sbjct: 592 LLDEESNF 599
Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. May be involved in the remodeling of the actin cytoskeleton. Binds actin with high affinity both in the absence and presence of ATP and its mechanochemical activity is inhibited by calcium ions. Also acts as a GTPase activating protein on Rho.
Homo sapiens (taxid: 9606)
>sp|Q9Z1N3|MYO9A_RAT Unconventional myosin-IXa OS=Rattus norvegicus GN=Myo9a PE=1 SV=1 Back     alignment and function description
>sp|Q8C170|MYO9A_MOUSE Unconventional myosin-IXa OS=Mus musculus GN=Myo9a PE=1 SV=2 Back     alignment and function description
>sp|B2RTY4|MYO9A_HUMAN Unconventional myosin-IXa OS=Homo sapiens GN=MYO9A PE=1 SV=2 Back     alignment and function description
>sp|Q9QY06|MYO9B_MOUSE Unconventional myosin-IXb OS=Mus musculus GN=Myo9b PE=1 SV=2 Back     alignment and function description
>sp|Q63358|MYO9B_RAT Unconventional myosin-IXb OS=Rattus norvegicus GN=Myo9b PE=1 SV=1 Back     alignment and function description
>sp|Q9UKN7|MYO15_HUMAN Unconventional myosin-XV OS=Homo sapiens GN=MYO15A PE=1 SV=2 Back     alignment and function description
>sp|Q9QZZ4|MYO15_MOUSE Unconventional myosin-XV OS=Mus musculus GN=Myo15a PE=1 SV=2 Back     alignment and function description
>sp|Q9U1M8|MYOI_DICDI Myosin-I heavy chain OS=Dictyostelium discoideum GN=myoI PE=1 SV=1 Back     alignment and function description
>sp|P54696|MYOH_DICDI Myosin-H heavy chain OS=Dictyostelium discoideum GN=myoH PE=4 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query165
189234985 1843 PREDICTED: similar to myosin-rhogap prot 0.412 0.036 0.838 1e-29
270002356 2021 hypothetical protein TcasGA2_TC001372 [T 0.412 0.033 0.838 1e-29
328701265 1863 PREDICTED: myosin-IXb isoform 3 [Acyrtho 0.412 0.036 0.823 5e-29
328701263 1931 PREDICTED: myosin-IXb isoform 2 [Acyrtho 0.412 0.035 0.823 5e-29
328701269 1847 PREDICTED: myosin-IXb isoform 1 [Acyrtho 0.412 0.036 0.823 6e-29
328701267 1776 PREDICTED: myosin-IXb isoform 4 [Acyrtho 0.412 0.038 0.823 7e-29
427791915 1463 Putative myosin class i heavy chain, par 0.418 0.047 0.768 2e-28
321455065 1839 hypothetical protein DAPPUDRAFT_64918 [D 0.412 0.036 0.779 2e-27
241733201 1837 myosin-IX, putative [Ixodes scapularis] 0.418 0.037 0.753 2e-27
357623270 1062 hypothetical protein KGM_18974 [Danaus p 0.412 0.064 0.823 3e-27
>gi|189234985|ref|XP_968193.2| PREDICTED: similar to myosin-rhogap protein, myr [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 57/68 (83%), Positives = 63/68 (92%)

Query: 15  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 74
           FEQLCINYANEHLQYYFNQHVF+YEQEEY KEGIRW +I+F DNT CLQL+EGKPNGLLC
Sbjct: 524 FEQLCINYANEHLQYYFNQHVFKYEQEEYRKEGIRWNNIDFMDNTGCLQLIEGKPNGLLC 583

Query: 75  VLDDQANW 82
           +LDDQ N+
Sbjct: 584 LLDDQCNF 591

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|270002356|gb|EEZ98803.1| hypothetical protein TcasGA2_TC001372 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|328701265|ref|XP_003241547.1| PREDICTED: myosin-IXb isoform 3 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328701263|ref|XP_003241546.1| PREDICTED: myosin-IXb isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328701269|ref|XP_001944223.2| PREDICTED: myosin-IXb isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328701267|ref|XP_003241548.1| PREDICTED: myosin-IXb isoform 4 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|427791915|gb|JAA61409.1| Putative myosin class i heavy chain, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|321455065|gb|EFX66210.1| hypothetical protein DAPPUDRAFT_64918 [Daphnia pulex] Back     alignment and taxonomy information
>gi|241733201|ref|XP_002412311.1| myosin-IX, putative [Ixodes scapularis] gi|215505558|gb|EEC15052.1| myosin-IX, putative [Ixodes scapularis] Back     alignment and taxonomy information
>gi|357623270|gb|EHJ74495.1| hypothetical protein KGM_18974 [Danaus plexippus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query165
WB|WBGene00002040 1880 hum-7 [Caenorhabditis elegans 0.557 0.048 0.521 1.3e-21
UNIPROTKB|F1S9U2548 F1S9U2 "Uncharacterized protei 0.412 0.124 0.588 6.7e-20
UNIPROTKB|E1BS57 2001 Gga.50857 "Uncharacterized pro 0.424 0.034 0.585 1.5e-19
UNIPROTKB|E1C471 2031 Gga.50857 "Uncharacterized pro 0.424 0.034 0.585 1.5e-19
UNIPROTKB|E1C470 2140 Gga.50857 "Uncharacterized pro 0.424 0.032 0.585 1.6e-19
UNIPROTKB|E1BNV7 2159 MYO9B "Uncharacterized protein 0.412 0.031 0.588 2.3e-19
UNIPROTKB|G3MXH1 1104 Bt.27781 "Uncharacterized prot 0.412 0.061 0.588 3.9e-19
UNIPROTKB|H3BMM1 1301 MYO9A "Unconventional myosin-I 0.412 0.052 0.588 4.9e-19
UNIPROTKB|E2R266 2161 MYO9B "Uncharacterized protein 0.412 0.031 0.588 5.6e-19
UNIPROTKB|G3MXE8 1951 Bt.27781 "Uncharacterized prot 0.412 0.034 0.588 8.1e-19
WB|WBGene00002040 hum-7 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
 Score = 263 (97.6 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
 Identities = 49/94 (52%), Positives = 70/94 (74%)

Query:    15 FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 74
             FEQLCINYANE LQ YFNQH+FQ+EQEEY KEGI W +IE++DNT C+QL + KP G+L 
Sbjct:   556 FEQLCINYANEKLQSYFNQHIFQFEQEEYLKEGISWTNIEYTDNTECVQLFQSKPYGILR 615

Query:    75 VLDDQANWSRG--NPMVSCVFWMIKPRLFAPTPK 106
             ++D+++N + G  + M++ +   +K   +  TP+
Sbjct:   616 LVDEESNINNGTDDSMLAKLNQFLKNNEYYETPQ 649
GO:0007165 "signal transduction" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0003774 "motor activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0016459 "myosin complex" evidence=IEA
GO:0060002 "plus-end directed microfilament motor activity" evidence=IDA
GO:0005516 "calmodulin binding" evidence=IPI
GO:0033275 "actin-myosin filament sliding" evidence=IDA
UNIPROTKB|F1S9U2 F1S9U2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BS57 Gga.50857 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C471 Gga.50857 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C470 Gga.50857 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BNV7 MYO9B "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|G3MXH1 Bt.27781 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|H3BMM1 MYO9A "Unconventional myosin-IXa" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2R266 MYO9B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|G3MXE8 Bt.27781 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P19524MYO2_YEASTNo assigned EC number0.56940.43030.0451yesN/A
Q9Z1N3MYO9A_RATNo assigned EC number0.56330.43030.0270yesN/A
Q13459MYO9B_HUMANNo assigned EC number0.58820.41210.0315yesN/A
O74805MYO51_SCHPONo assigned EC number0.57740.42420.0475yesN/A
Q875X3MYO2A_NAUCCNo assigned EC number0.56940.43030.0453yesN/A
Q29P71MYO7A_DROPSNo assigned EC number0.52110.43030.0327yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query165
cd01385 692 cd01385, MYSc_type_IX, Myosin motor domain, type I 2e-34
smart00242 677 smart00242, MYSc, Myosin 8e-33
cd00124 679 cd00124, MYSc, Myosin motor domain 5e-30
cd01384 674 cd01384, MYSc_type_XI, Myosin motor domain, plant- 4e-28
cd01381 671 cd01381, MYSc_type_VII, Myosin motor domain, type 1e-27
pfam00063 679 pfam00063, Myosin_head, Myosin head (motor domain) 1e-27
cd01380 691 cd01380, MYSc_type_V, Myosin motor domain, type V 3e-27
cd01387 677 cd01387, MYSc_type_XV, Myosin motor domain, type X 7e-26
cd01383 677 cd01383, MYSc_type_VIII, Myosin motor domain, plan 2e-25
COG5022 1463 COG5022, COG5022, Myosin heavy chain [Cytoskeleton 6e-25
cd01379 653 cd01379, MYSc_type_III, Myosin motor domain, type 4e-22
cd01377 693 cd01377, MYSc_type_II, Myosin motor domain, type I 9e-22
cd01378 674 cd01378, MYSc_type_I, Myosin motor domain, type I 5e-21
cd01382 717 cd01382, MYSc_type_VI, Myosin motor domain, type V 1e-19
PTZ00014 821 PTZ00014, PTZ00014, myosin-A; Provisional 1e-10
cd01386 767 cd01386, MYSc_type_XVIII, Myosin motor domain, typ 2e-04
>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins Back     alignment and domain information 
 Score =  126 bits (318), Expect = 2e-34
 Identities = 44/71 (61%), Positives = 55/71 (77%)

Query: 15  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 74
           FEQLCINYANE LQYYFNQH+F+ EQEEY  EGI W +IE++DN  C+QL   KP GLL 
Sbjct: 395 FEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLY 454

Query: 75  VLDDQANWSRG 85
           +LD+++N+   
Sbjct: 455 LLDEESNFPHA 465

Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 692
>gnl|CDD|214580 smart00242, MYSc, Myosin Back     alignment and domain information
>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain Back     alignment and domain information
>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI myosin, involved in organelle transport Back     alignment and domain information
>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins Back     alignment and domain information
>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain) Back     alignment and domain information
>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins Back     alignment and domain information
>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins Back     alignment and domain information
>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata Back     alignment and domain information
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins Back     alignment and domain information
>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins Back     alignment and domain information
>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins Back     alignment and domain information
>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins Back     alignment and domain information
>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional Back     alignment and domain information
>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 165
COG5022 1463 Myosin heavy chain [Cytoskeleton] 100.0
PTZ00014 821 myosin-A; Provisional 100.0
cd01387 677 MYSc_type_XV Myosin motor domain, type XV myosins. 100.0
cd01383 677 MYSc_type_VIII Myosin motor domain, plant-specific 100.0
cd01384 674 MYSc_type_XI Myosin motor domain, plant-specific t 100.0
cd01381 671 MYSc_type_VII Myosin motor domain, type VII myosin 100.0
cd01382 717 MYSc_type_VI Myosin motor domain, type VI myosins. 100.0
cd01385 692 MYSc_type_IX Myosin motor domain, type IX myosins. 100.0
cd01378 674 MYSc_type_I Myosin motor domain, type I myosins. M 100.0
cd01379 653 MYSc_type_III Myosin motor domain, type III myosin 100.0
cd01380 691 MYSc_type_V Myosin motor domain, type V myosins. M 100.0
cd01377 693 MYSc_type_II Myosin motor domain, type II myosins. 100.0
smart00242 677 MYSc Myosin. Large ATPases. ATPase; molecular moto 100.0
cd00124 679 MYSc Myosin motor domain. This catalytic (head) do 100.0
cd01386 767 MYSc_type_XVIII Myosin motor domain, type XVIII my 99.98
PF00063 689 Myosin_head: Myosin head (motor domain); InterPro: 99.97
KOG0161|consensus 1930 99.97
KOG0164|consensus 1001 99.97
KOG0163|consensus 1259 99.95
KOG0160|consensus 862 99.94
KOG0162|consensus 1106 99.94
KOG4229|consensus 1062 99.9
COG5022 1463 Myosin heavy chain [Cytoskeleton] 81.4
>COG5022 Myosin heavy chain [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-36  Score=288.66  Aligned_cols=130  Identities=36%  Similarity=0.558  Sum_probs=110.7

Q ss_pred             ccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeeccCCcHHHHHHhhcC-CCcccccchhhhccCCC
Q psy2909           7 VQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGK-PNGLLCVLDDQANWSRG   85 (165)
Q Consensus         7 fe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~-p~GLl~lLDee~~~p~~   85 (165)
                      ||.|+.|||||||||||||||||+|++|+|+.||++|.+|||.|..|+|.||++|+|||+++ |.|||++|||||.+|.+
T Consensus       438 FEiFEkNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~a  517 (1463)
T COG5022         438 FEIFEKNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHA  517 (1463)
T ss_pred             hhhhccCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999973 78999999999999999


Q ss_pred             CCchhhHHHhhcCCCCCCCCCCCCCcceeecCCCceeeeeecCCCcc---HHHHHHHhcc
Q psy2909          86 NPMVSCVFWMIKPRLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVK---QYWLQVIRDD  142 (165)
Q Consensus        86 tD~s~~~~~~~k~~~~~~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~---~~~~~~~~d~  142 (165)
                      +|++|..++...-+. .     .+..++..+....-|+|+||||.|.   .+|+++|||+
T Consensus       518 td~s~~sKL~~~l~~-~-----~~~~f~~~rf~~~~FvvkHYAgDVeY~veg~ldKNkD~  571 (1463)
T COG5022         518 TDESFTSKLAQRLNK-N-----SNPKFKKSRFRDNKFVVKHYAGDVEYDVEGFLDKNKDP  571 (1463)
T ss_pred             CchHHHHHHHHHhcc-c-----cCccccccccCCCceEEEeecccceeeccchhhhCcch
Confidence            999999987544331 1     1111222222233355999999999   7899999986

>PTZ00014 myosin-A; Provisional Back     alignment and domain information
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins Back     alignment and domain information
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata Back     alignment and domain information
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport Back     alignment and domain information
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins Back     alignment and domain information
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins Back     alignment and domain information
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins Back     alignment and domain information
>cd01378 MYSc_type_I Myosin motor domain, type I myosins Back     alignment and domain information
>cd01379 MYSc_type_III Myosin motor domain, type III myosins Back     alignment and domain information
>cd01380 MYSc_type_V Myosin motor domain, type V myosins Back     alignment and domain information
>cd01377 MYSc_type_II Myosin motor domain, type II myosins Back     alignment and domain information
>smart00242 MYSc Myosin Back     alignment and domain information
>cd00124 MYSc Myosin motor domain Back     alignment and domain information
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins Back     alignment and domain information
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>KOG0161|consensus Back     alignment and domain information
>KOG0164|consensus Back     alignment and domain information
>KOG0163|consensus Back     alignment and domain information
>KOG0160|consensus Back     alignment and domain information
>KOG0162|consensus Back     alignment and domain information
>KOG4229|consensus Back     alignment and domain information
>COG5022 Myosin heavy chain [Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query165
1oe9_A 795 Crystal Structure Of Myosin V Motor With Essential 1e-16
1w8j_A 766 Crystal Structure Of Myosin V Motor Domain - Nucleo 1e-16
2dfs_A 1080 3-D Structure Of Myosin-V Inhibited State Length = 2e-16
4db1_A 783 Cardiac Human Myosin S1dc, Beta Isoform Complexed W 7e-16
2w4g_M 840 Isometrically Contracting Insect Asynchronous Fligh 1e-15
2x9h_A695 Crystal Structure Of Myosin-2 Motor Domain In Compl 1e-15
2aka_A 776 Structure Of The Nucleotide-Free Myosin Ii Motor Do 1e-15
3mkd_A692 Crystal Structure Of Myosin-2 Dictyostelium Discoid 1e-15
1w9k_A 770 Dictyostelium Discoideum Myosin Ii Motor Domain S45 1e-15
1jwy_A 776 Crystal Structure Of The Dynamin A Gtpase Domain Co 1e-15
1yv3_A 762 The Structural Basis Of Blebbistatin Inhibition And 1e-15
2y0r_X 758 Structural Basis For The Allosteric Interference Of 1e-15
3myh_X 762 Insights Into The Importance Of Hydrogen Bonding In 1e-15
1w9l_A 770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 1e-15
1w9i_A 770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 2e-15
1mmg_A 762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 2e-15
2y9e_X 758 Structural Basis For The Allosteric Interference Of 2e-15
1w9j_A 770 Myosin Ii Dictyostelium Discoideum Motor Domain S45 2e-15
1mmn_A 762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 2e-15
1mmd_A 762 Truncated Head Of Myosin From Dictyostelium Discoid 2e-15
1mma_A 762 X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga 2e-15
1d0x_A 761 Dictyostelium Myosin S1dc (Motor Domain Fragment) C 2e-15
3mnq_A 788 Crystal Structure Of Myosin-2 Motor Domain In Compl 2e-15
1fmv_A 761 Crystal Structure Of The Apo Motor Domain Of Dictyo 2e-15
2jhr_A 788 Crystal Structure Of Myosin-2 Motor Domain In Compl 2e-15
2xo8_A 776 Crystal Structure Of Myosin-2 In Complex With Tribr 2e-15
2os8_A 840 Rigor-Like Structures Of Muscle Myosins Reveal Key 2e-15
2xel_A 776 Molecular Mechanism Of Pentachloropseudilin Mediate 2e-15
2ec6_A 838 Placopecten Striated Muscle Myosin Ii Length = 838 2e-15
1g8x_A 1010 Structure Of A Genetically Engineered Molecular Mot 2e-15
1b7t_A 835 Myosin Digested By Papain Length = 835 3e-15
1kk7_A 837 Scallop Myosin In The Near Rigor Conformation Lengt 3e-15
1qvi_A 840 Crystal Structure Of Scallop Myosin S1 In The Pre-P 3e-15
1dfl_A 831 Scallop Myosin S1 Complexed With Mgadp:vanadate-Tra 3e-15
1dfk_A 830 Nucleotide-Free Scallop Myosin S1-Near Rigor State 3e-15
1lvk_A 762 X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N 5e-15
3i5g_A 839 Crystal Structure Of Rigor-Like Squid Myosin S1 Len 6e-15
2mys_A 843 Myosin Subfragment-1, Alpha Carbon Coordinates Only 4e-14
1m8q_A 840 Molecular Models Of Averaged Rigor Crossbridges Fro 4e-14
1i84_S 1184 Cryo-Em Structure Of The Heavy Meromyosin Subfragme 1e-13
4e7z_A 798 Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal F 5e-13
4dbr_A 786 Myosin Vi D179y (md) Pre-powerstroke State Length = 5e-13
2v26_A 784 Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) L 5e-13
2x51_A 789 M6 Delta Insert1 Length = 789 5e-13
2vas_A 788 Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigo 5e-13
4anj_A 1052 Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke St 5e-13
4e7s_A 798 Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke Stat 5e-13
4dbq_A 788 Myosin Vi D179y (md-insert2-cam, Delta-insert1) Pos 5e-13
2bkh_A 814 Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Struc 5e-13
2bki_A 858 Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal St 5e-13
3l9i_A 814 Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant 5e-13
4dbp_A 814 Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal 5e-13
1br2_A 791 Smooth Muscle Myosin Motor Domain Complexed With Mg 1e-12
1br1_A 820 Smooth Muscle Myosin Motor Domain-Essential Light C 1e-12
3dtp_A 971 Tarantula Heavy Meromyosin Obtained By Flexible Doc 2e-12
3dtp_B 973 Tarantula Heavy Meromyosin Obtained By Flexible Doc 2e-12
3j04_A 909 Em Structure Of The Heavy Meromyosin Subfragment Of 2e-12
1lkx_A 697 Motor Domain Of Myoe, A Class-I Myosin Length = 697 2e-12
4a7f_C 697 Structure Of The Actin-Tropomyosin-Myosin Complex ( 2e-12
2ycu_A 995 Crystal Structure Of Human Non Muscle Myosin 2c In 4e-12
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light Chain - Nucleotide-Free Length = 795 Back     alignment and structure 
Iteration: 1

 Score = 82.4 bits (202), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/76 (52%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 11  ELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPN 70
           E+  FEQ CINYANE LQ  FN HVF+ EQEEY KE I W  I+F DN  C+ L+E K  
Sbjct: 445 EINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-M 503
Query: 71  GLLCVLDDQANWSRGN 86
           G+L +LD++    +G+
Sbjct: 504 GVLDLLDEECKMPKGS 519
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain - Nucleotide-Free Length = 766 Back     alignment and structure
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State Length = 1080 Back     alignment and structure
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With Mn-Amppnp Length = 783 Back     alignment and structure
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentachlorocarbazole Length = 695 Back     alignment and structure
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain From Dictyostelium Discoideum Fused To The Gtpase Domain Of Dynamin 1 From Rattus Norvegicus Length = 776 Back     alignment and structure
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum Motor Domain S456y Mutant In Complex With Adp-Orthovanadate Length = 692 Back     alignment and structure
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With Bound Mgadp-Befx Length = 770 Back     alignment and structure
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed With Gdp, Determined As Myosin Fusion Length = 776 Back     alignment and structure
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And Specificity For Myosin Ii Length = 762 Back     alignment and structure
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758 Back     alignment and structure
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The Gamma- Phosphate Binding Pocket Of Myosin: Structural And Functional Studies Of Ser236 Length = 762 Back     alignment and structure
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e Bound With Mgadp-Alf4 Length = 770 Back     alignment and structure
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Befx Length = 770 Back     alignment and structure
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758 Back     alignment and structure
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Alf4 Length = 770 Back     alignment and structure
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum Complexed With Mgadp-Bef3 Length = 762 Back     alignment and structure
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment) Complexed With M-Nitrophenyl Aminoethyldiphosphate Beryllium Trifluoride. Length = 761 Back     alignment and structure
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp- Metavanadate And Resveratrol Length = 788 Back     alignment and structure
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of Dictyostellium Myosin Ii Length = 761 Back     alignment and structure
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentabromopseudilin Length = 788 Back     alignment and structure
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With Tribromodichloropseudilin Length = 776 Back     alignment and structure
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key Mechanical Elements In The Transduction Pathways Of This Allosteric Motor Length = 840 Back     alignment and structure
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated Inhibition Of Myosin Motor Activity Length = 776 Back     alignment and structure
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii Length = 838 Back     alignment and structure
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor Length = 1010 Back     alignment and structure
>pdb|1B7T|A Chain A, Myosin Digested By Papain Length = 835 Back     alignment and structure
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation Length = 837 Back     alignment and structure
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power Stroke State To 2.6 Angstrom Resolution: Flexibility And Function In The Head Length = 840 Back     alignment and structure
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition State Length = 831 Back     alignment and structure
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State Length = 830 Back     alignment and structure
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N- Methylanthraniloyl) Nucleotide Bound To Dictyostelium Discoideum Myosin Motor Domain Length = 762 Back     alignment and structure
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1 Length = 839 Back     alignment and structure
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For The Two Light Chains Length = 843 Back     alignment and structure
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From Tomograms Of Insect Flight Muscle Length = 840 Back     alignment and structure
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of Chicken Gizzard Smooth Muscle Myosin With Regulatory Light Chain In The Dephosphorylated State. Only C Alphas Provided For Regulatory Light Chain. Only Backbone Atoms Provided For S2 Fragment. Length = 1184 Back     alignment and structure
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form Length = 798 Back     alignment and structure
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State Length = 786 Back     alignment and structure
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) Length = 784 Back     alignment and structure
>pdb|2X51|A Chain A, M6 Delta Insert1 Length = 789 Back     alignment and structure
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State Length = 788 Back     alignment and structure
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.Alf4) Length = 1052 Back     alignment and structure
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State Length = 798 Back     alignment and structure
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor State Length = 788 Back     alignment and structure
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure Length = 814 Back     alignment and structure
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure Length = 858 Back     alignment and structure
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal Structure Length = 814 Back     alignment and structure
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal Structure Length = 814 Back     alignment and structure
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With Mgadp.Alf4 Length = 791 Back     alignment and structure
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain Complex With Mgadp.Alf4 Bound At The Active Site Length = 820 Back     alignment and structure
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 971 Back     alignment and structure
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 973 Back     alignment and structure
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick Smooth Muscle Myosin With Regulatory Light Chain In Phosphorylated State Length = 909 Back     alignment and structure
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin Length = 697 Back     alignment and structure
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm 3) Length = 697 Back     alignment and structure
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In Pre-power Stroke State Length = 995 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query165
2v26_A 784 Myosin VI; calmodulin-binding, nucleotide-binding, 6e-35
1lkx_A 697 Myosin IE heavy chain; myosin motor domain, lever 2e-34
2dfs_A 1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-33
1w7j_A 795 Myosin VA; motor protein, unconventional myosin, m 7e-33
2ycu_A 995 Non muscle myosin 2C, alpha-actinin; motor protein 3e-31
1g8x_A 1010 Myosin II heavy chain fused to alpha-actinin 3; mo 3e-31
1w9i_A 770 Myosin II heavy chain; molecular motor, ATPase, mo 4e-31
4db1_A 783 Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb 8e-31
1kk8_A 837 Myosin heavy chain, striated muscle; actin-detache 1e-30
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 3e-30
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Length = 784 Back     alignment and structure
 Score =  127 bits (322), Expect = 6e-35
 Identities = 29/65 (44%), Positives = 43/65 (66%)

Query: 15  FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 74
           FEQ CINY NE LQ +FN+ + + EQE Y KEG+    + + DN  C+ L+E +  G+L 
Sbjct: 464 FEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILD 523

Query: 75  VLDDQ 79
           +LD++
Sbjct: 524 ILDEE 528
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Length = 697 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Length = 795 Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Length = 770 Back     alignment and structure
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Length = 783 Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query165
1lkx_A 697 Myosin IE heavy chain; myosin motor domain, lever 100.0
2v26_A 784 Myosin VI; calmodulin-binding, nucleotide-binding, 100.0
1w7j_A 795 Myosin VA; motor protein, unconventional myosin, m 100.0
4anj_A 1052 Unconventional myosin-VI, green fluorescent prote; 100.0
1w9i_A 770 Myosin II heavy chain; molecular motor, ATPase, mo 100.0
4db1_A 783 Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb 100.0
1kk8_A 837 Myosin heavy chain, striated muscle; actin-detache 100.0
2dfs_A 1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 100.0
2ycu_A 995 Non muscle myosin 2C, alpha-actinin; motor protein 100.0
1g8x_A 1010 Myosin II heavy chain fused to alpha-actinin 3; mo 100.0
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 100.0
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Back     alignment and structure
Probab=100.00  E-value=1.8e-37  Score=283.96  Aligned_cols=131  Identities=27%  Similarity=0.379  Sum_probs=112.4

Q ss_pred             ccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeeccCCcHHHHHHhhcCCCcccccchhhhccCCCC
Q psy2909           7 VQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQANWSRGN   86 (165)
Q Consensus         7 fe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~~dn~~~ldLi~~~p~GLl~lLDee~~~p~~t   86 (165)
                      ||.|+.||||||||||||||||++|++++|+.||++|.+|||+|..|+|.||++|+|||+++|.|||+||||||++|++|
T Consensus       390 FE~f~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLDEec~~p~~t  469 (697)
T 1lkx_A          390 FEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKST  469 (697)
T ss_dssp             CCCCSSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHHSTTCC
T ss_pred             ccccCcCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhHHhhCCCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhhHHHhhc---CCCCCCCCCCCCCcceeecCCCceeeeeecCCCcc---HHHHHHHhcc
Q psy2909          87 PMVSCVFWMIK---PRLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVK---QYWLQVIRDD  142 (165)
Q Consensus        87 D~s~~~~~~~k---~~~~~~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~---~~~~~~~~d~  142 (165)
                      |++|++++..+   +..|.....+..     ...+...|+|+||||.|.   .+|+++|+|.
T Consensus       470 D~~f~~kl~~~~~~~~~f~~~~~~~~-----k~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~  526 (697)
T 1lkx_A          470 DQTFLDSICKQFEKNPHLQSYVVSKD-----RSIGDTCFRLKHYAGDVTYDVRGFLDKNKDT  526 (697)
T ss_dssp             HHHHHHHHHHHSSSSTTEECTTTSCC-----TTSCTTEEEEEETTEEEEEECTTHHHHHHCC
T ss_pred             hHHHHHHHHHHhcCCCccccCCCCCC-----CccccCceeeeeeeeEEEEccCChhhhhccc
Confidence            99999987543   344432110000     011245566999999999   8999999986
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Back     alignment and structure
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Back     alignment and structure
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa} Back     alignment and structure
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Back     alignment and structure
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Back     alignment and structure
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 165
d1lkxa_ 684 c.37.1.9 (A:) Myosin S1, motor domain {Dictyosteli 9e-18
d1br2a2 710 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chick 5e-16
d2mysa2 794 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain 1e-15
d1w7ja2 730 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick 6e-15
d1kk8a2 789 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain 6e-15
d1d0xa2 712 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain 1e-13
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Length = 684 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

 Score = 77.0 bits (189), Expect = 9e-18
 Identities = 31/80 (38%), Positives = 48/80 (60%)

Query: 7   VQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVE 66
            +  +   FEQL IN+ NE LQ  F +   + EQEEY +EGI W++IE+ +N    +L+E
Sbjct: 382 FEVFQNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIE 441

Query: 67  GKPNGLLCVLDDQANWSRGN 86
            KP GL+ +LD+    ++  
Sbjct: 442 KKPIGLISLLDEACLIAKST 461
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 710 Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794 Back     information, alignment and structure
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730 Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789 Back     information, alignment and structure
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Length = 712 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query165
d1d0xa2 712 Myosin S1, motor domain {Dictyostelium discoideum 99.98
d1w7ja2 730 Myosin S1, motor domain {Chicken (Gallus gallus), 99.97
d1lkxa_ 684 Myosin S1, motor domain {Dictyostelium discoideum, 99.97
d1br2a2 710 Myosin S1, motor domain {Chicken (Gallus gallus), 99.97
d2mysa2 794 Myosin S1, motor domain {Chicken (Gallus gallus), 99.97
d1kk8a2 789 Myosin S1, motor domain {Bay scallop (Aequipecten 99.97
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.98  E-value=2.6e-33  Score=255.09  Aligned_cols=129  Identities=33%  Similarity=0.560  Sum_probs=102.2

Q ss_pred             ccccCCCchhhhHHhhhhHHHHHHHHHhhhhhhHHhhhhcCceeeeeccC-CcHHHHHHhhcC-CCcccccchhhhccCC
Q psy2909           7 VQQDELFRFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEGK-PNGLLCVLDDQANWSR   84 (165)
Q Consensus         7 fe~~~~NsfEQLciNyanE~Lq~~f~~~~f~~e~~~y~~EgI~~~~i~~~-dn~~~ldLi~~~-p~GLl~lLDee~~~p~   84 (165)
                      ||.++.||||||||||||||||++|++++|+.|+++|.+|||+|..|+|. ||+.|++||+++ |.|||++|||||++|+
T Consensus       411 FE~f~~NsfEQLcINyaNEkLQ~~f~~~~f~~eq~eY~~EgI~~~~i~~~~dn~~~~~Li~~k~p~Gll~lLdee~~~~~  490 (712)
T d1d0xa2         411 FEIFKVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPN  490 (712)
T ss_dssp             CCCCSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--------CHHHHHHHHHCTTTTCHHHHHHHHHTCTT
T ss_pred             ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccccCCCcHHHHHHHhccCCCcHHHHhHHHhcCCC
Confidence            89999999999999999999999999999999999999999999999995 999999999864 7999999999999999


Q ss_pred             CCCchhhHHHhhcCCCCCCCCCCCCCcceeecCCCceeeeeecCCCcc---HHHHHHHhcc
Q psy2909          85 GNPMVSCVFWMIKPRLFAPTPKPLNGLFEYVRKPDCLIKLELFPPPVK---QYWLQVIRDD  142 (165)
Q Consensus        85 ~tD~s~~~~~~~k~~~~~~~~~~~~~~~~~~~k~~~ff~i~HyaG~V~---~~~~~~~~d~  142 (165)
                      ++|++|++++..++....       ..+.........|+|+||||.|.   .+|+++|+|.
T Consensus       491 ~td~~~l~kl~~~~~~~~-------~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfl~KNrD~  544 (712)
T d1d0xa2         491 ATDNTLITKLHSHFSKKN-------AKYEEPRFSKTEFGVTHYAGQVMYEIQDWLEKNKDP  544 (712)
T ss_dssp             CCHHHHHHHHHHHHTTTS-------TTEECCSSCSSEEEEEETTEEEEEECTTHHHHHHCC
T ss_pred             CChHHHHHHHHHHhccCC-------cccccccCCCCceeeEecccceeEecchHHHhccch
Confidence            999999998754321100       01111112234566999999999   7899999985
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Back     information, alignment and structure
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Back     information, alignment and structure
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Back     information, alignment and structure
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Back     information, alignment and structure