Psyllid ID: psy2949

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------
Protein Sequence
MEGDILIPRERDSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKCPKNYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKCPKNYYQGFDIQGFYSTSGPIPDLGYLPTGSGWFYKIGGPSDDRKIMDKFFNNTIHFSKMKVGRDNSYTYRYAL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccEEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEccccccEEEEEEcccccccccccccccccEEEEEccccccccHHHHHHHHHHHccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccEEEEccccccccccccEEEEccccccccccccccccHHHHHHHHHHccccccccccccccccEEcccccccccccccccccEEEEccccccccccccccccEEEEEEEEEcccccEEEcccc
Secondary Structure Prediction (SSPRO)
ccccEEcccccccHHHccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHccEEEEEEccccccEEEEEEcccccEEEccccccccccEEEEEccccccHEEEHHHHHHHHHHHccccccccccHEEEEHHccccccccccccccHHHHcccccccccHHHHHEcccHcccccccccEEEccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEcccccccccccccEEEcccccccccccccccccHHHHHHHHHHHcccccccEcEcccccccccccccccccccccccEEEEEEEccccEEEEEEEEcccEEEEEEEEEccccEEEEccc
Coil and Loop (DISEMBL)
megdiliprerdsrNLVLYQAqlwpdktvyynfedsefTIYEKTLVENAIQDLRMhtcvrfvprtnqdtylrfrntgfgcaspvgyfpigtgidIFLGGRVCFLKGKIQHEILHSlgfwhehtrpdrDQFVRVLRenigpghefnlerrptgsvrtfgmpydygsimhysgiafskdgvsktivplypgaedtmgqrdamSRVDLAKLNRlykcpknyyqghefnlerrpagsvrtfsmpydygsimhysgiafskdgvsktivplypgaedtmgqrdamSRVDLAKLNrlykcpknyyqgfdiqgfystsgpipdlgylptgsgwfykiggpsddrKIMDKFFNNtihfskmkvgrdnsytYRYAL
Flexible Loop (DISEMBL)
megdiliprerdsrnLVLYqaqlwpdktvYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSlgfwhehtrpDRDQFVRVLREnigpghefnlerrptgsvRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYpgaedtmgqrdAMSRVDLAKLNRLYKCPKNYYqghefnlerrpagsVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYpgaedtmgqrdAMSRVDLAKLNRLYKCPKNYYQGFDIQGFYSTSGPIPDLGYLPTGSGWFYKIGGPSDDRKIMDKFFNNtihfskmkvgrdnsyTYRYAL
Low Complexity Region (SEG)
MEGDILIPRERDSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKCPKNYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKCPKNYYQGFDIQGFYSTSGPIPDLGYLPTGSGWFYKIGGPSDDRKIMDKFFNNTIHFSKMKVGRDNSYTYRYAL
Disordered region (IsUnstruct)
*************RNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAED******AMSRVDLAKLNRLYKCPKNYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDT****DAMSRVDLAKLNRLYKCPKNYYQGFDIQGFYSTSGPIPDLGYLPTGSGWFYKIGGPSDDRKIMDKFFNNTIHFSKMKVGRDNSYTY****
Disordered Region (DISOPRED)
MEGDILIPRERDSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKCPKNYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKCPKNYYQGFDI*********IPDLGYLPTGSGWFYKIGGPSDDRKIMDKFFNNTIHFSKMKVGRDNSYTYRYAL
Disordered Region (DISEMBL)
MEGDILIPRERDSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKCPKNYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKCPKNYYQGFDIQGFYSTSGPIPDLGYLPTGSGWFYKIGGPSDDRKIMDKFFNNTIHFSKMKVGRDNSYTYRYAL
Disordered Region (DISPRO)
**GDILIPRERDSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKCPKNYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKCPKNYYQGFDIQGFYSTSGPIPDLGYLPTGSGWFYKIGGPSDDRKIMDKFFNNTIHFSKMKVGRDNSYTYRYAL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGDILIPRERDSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKCPKNYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKCPKNYYQGFDIQGFYSTSGPIPDLGYLPTGSGWFYKIGGPSDDRKIMDKFFNNTIHFSKMKVGRDNSYTYRYAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	367	2.2.26 [Sep-21-2011]
Q19269	503	Zinc metalloproteinase na	yes	N/A	0.525	0.383	0.433	9e-39
P98063	991	Bone morphogenetic protei	yes	N/A	0.520	0.192	0.397	1e-34
Q9Y6L7	1015	Tolloid-like protein 2 OS	yes	N/A	0.553	0.2	0.385	2e-34
Q9WVM6	1012	Tolloid-like protein 2 OS	no	N/A	0.520	0.188	0.397	3e-34
P13497	986	Bone morphogenetic protei	no	N/A	0.520	0.193	0.397	4e-34
P31579	271	Low choriolytic enzyme OS	N/A	N/A	0.558	0.756	0.386	5e-34
O57382	1019	Tolloid-like protein 2 OS	N/A	N/A	0.566	0.204	0.366	7e-34
Q8JI28	1007	Tolloid-like protein 1 OS	N/A	N/A	0.553	0.201	0.380	8e-34
P98070	707	Bone morphogenetic protei	N/A	N/A	0.520	0.270	0.392	2e-33
O43897	1013	Tolloid-like protein 1 OS	no	N/A	0.621	0.225	0.348	3e-33

>sp|Q19269|NAS14_CAEEL Zinc metalloproteinase nas-14 OS=Caenorhabditis elegans GN=nas-14 PE=2 SV=2

 Score =  161 bits (407), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 88/203 (43%), Positives = 123/203 (60%), Gaps = 10/203 (4%)

Query: 15  NLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQD---TYL 71
           NLV Y  +LWP+  V Y  E+   T  ++T +  A  + +  TCVRFVP+T+ D    Y+
Sbjct: 116 NLVTYPDKLWPEGQVPYMLEEG-MTNDQRTAIAQAFDEYKTKTCVRFVPKTDDDFDYIYV 174

Query: 72  RFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFV 131
           + RN  FGC+S VG    G    + L    CF KG I HE++H+LGF+HEH+R DRD FV
Sbjct: 175 K-RNVAFGCSSYVGR--AGGNQTVSLEVDKCFSKGIIAHELMHALGFFHEHSRTDRDDFV 231

Query: 132 RVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAE 191
            +  +NI PG   N E+ P   + + GMPYDY S+MHY  +AFS++G   TI+P     E
Sbjct: 232 DINEDNIRPGMMRNFEKYPRKIIDSLGMPYDYESVMHYHKLAFSRNG-KPTIIP--KDNE 288

Query: 192 DTMGQRDAMSRVDLAKLNRLYKC 214
             +GQR  +S +D  K+N+LY+C
Sbjct: 289 ADVGQRYKLSEMDSKKVNKLYQC 311

Probable metalloprotease.
Caenorhabditis elegans (taxid: 6239)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: 2EC: 1

>sp|P98063|BMP1_MOUSE Bone morphogenetic protein 1 OS=Mus musculus GN=Bmp1 PE=1 SV=2

 Score =  147 bits (372), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 78/196 (39%), Positives = 113/196 (57%), Gaps = 5/196 (2%)

Query: 22  QLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCA 81
           ++WPD  + +      FT  ++ +   A++    HTCV F+ RT++D+Y+ F     GC 
Sbjct: 133 RVWPDGVIPFVI-GGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCC 191

Query: 82  SPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPG 141
           S VG    G G      G+ C   G + HE+ H +GFWHEHTRPDRD+ V ++RENI PG
Sbjct: 192 SYVGR--RGGGPQAISIGKNCDKFGIVVHELGHVIGFWHEHTRPDRDRHVSIVRENIQPG 249

Query: 142 HEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYP--GAEDTMGQRDA 199
            E+N  +     V + G  YD+ SIMHY+   FS+     TIVP Y   G + ++GQR  
Sbjct: 250 QEYNFLKMEVQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPSIGQRTR 309

Query: 200 MSRVDLAKLNRLYKCP 215
           +S+ D+A+  +LYKCP
Sbjct: 310 LSKGDIAQARKLYKCP 325

Cleaves the C-terminal propeptides of procollagen I, II and III. Induces cartilage and bone formation. May participate in dorsoventral patterning during early development by cleaving chordin (CHRD).

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 1

EC: 9

>sp|Q9Y6L7|TLL2_HUMAN Tolloid-like protein 2 OS=Homo sapiens GN=TLL2 PE=1 SV=1

 Score =  146 bits (369), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/210 (38%), Positives = 116/210 (55%), Gaps = 7/210 (3%)

Query: 8   PRERDSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQ 67
           PR R  R       ++WP   + Y      FT  ++ + + A++    HTCV F+ RT++
Sbjct: 145 PRVR--RATTSRTERIWPGGVIPYVI-GGNFTGSQRAIFKQAMRHWEKHTCVTFIERTDE 201

Query: 68  DTYLRFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDR 127
           ++++ F     GC S VG    G G      G+ C   G + HE+ H +GFWHEHTRPDR
Sbjct: 202 ESFIVFSYRTCGCCSYVGR--RGGGPQAISIGKNCDKFGIVAHELGHVVGFWHEHTRPDR 259

Query: 128 DQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLY 187
           DQ V ++RENI PG E+N  +   G V + G  YD+ SIMHY+   FS+     TI+P  
Sbjct: 260 DQHVTIIRENIQPGQEYNFLKMEAGEVSSLGETYDFDSIMHYARNTFSRGVFLDTILPRQ 319

Query: 188 P--GAEDTMGQRDAMSRVDLAKLNRLYKCP 215
              G   T+GQR  +S+ D+A+  +LYKCP
Sbjct: 320 DDNGVRPTIGQRVRLSQGDIAQARKLYKCP 349

Protease which specifically processes pro-lysyl oxidase. Required for the embryonic development. Predominant protease, which in the development, influences dorsal-ventral patterning and skeletogenesis.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q9WVM6|TLL2_MOUSE Tolloid-like protein 2 OS=Mus musculus GN=Tll2 PE=1 SV=1

 Score =  146 bits (368), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 78/196 (39%), Positives = 112/196 (57%), Gaps = 5/196 (2%)

Query: 22  QLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCA 81
           ++WP   + Y      FT  ++ + + A++    HTCV FV RT++++++ F     GC 
Sbjct: 154 RIWPGGVIPYVI-GGNFTGTQRAIFKQAMRHWEKHTCVTFVERTDEESFIVFSYRTCGCC 212

Query: 82  SPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPG 141
           S VG    G G      G+ C   G + HE+ H +GFWHEHTRPDRDQ V ++RENI PG
Sbjct: 213 SYVGR--RGGGPQAISIGKNCDKFGIVAHELGHVVGFWHEHTRPDRDQHVTIIRENIQPG 270

Query: 142 HEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYP--GAEDTMGQRDA 199
            E+N  +   G V + G  YD+ SIMHY+   FS+     TI+P     G   T+GQR  
Sbjct: 271 QEYNFLKMEAGEVSSLGETYDFDSIMHYARNTFSRGVFLDTILPRRDDNGVRPTIGQRVR 330

Query: 200 MSRVDLAKLNRLYKCP 215
           +S+ D+A+  +LYKCP
Sbjct: 331 LSQGDIAQARKLYKCP 346

Protease which specifically processes pro-lysyl oxidase. Required for the embryonic development. Predominant protease, which in the development, influences dorsal-ventral patterning and skeletogenesis.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|P13497|BMP1_HUMAN Bone morphogenetic protein 1 OS=Homo sapiens GN=BMP1 PE=1 SV=2

 Score =  145 bits (367), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 78/196 (39%), Positives = 112/196 (57%), Gaps = 5/196 (2%)

Query: 22  QLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCA 81
           ++WPD  + +      FT  ++ +   A++    HTCV F+ RT++D+Y+ F     GC 
Sbjct: 128 RVWPDGVIPFVI-GGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCC 186

Query: 82  SPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPG 141
           S VG    G G      G+ C   G + HE+ H +GFWHEHTRPDRD+ V ++RENI PG
Sbjct: 187 SYVGR--RGGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPG 244

Query: 142 HEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYP--GAEDTMGQRDA 199
            E+N  +     V + G  YD+ SIMHY+   FS+     TIVP Y   G +  +GQR  
Sbjct: 245 QEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTR 304

Query: 200 MSRVDLAKLNRLYKCP 215
           +S+ D+A+  +LYKCP
Sbjct: 305 LSKGDIAQARKLYKCP 320

Cleaves the C-terminal propeptides of procollagen I, II and III. Induces cartilage and bone formation. May participate in dorsoventral patterning during early development by cleaving chordin (CHRD).

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 1

EC: 9

>sp|P31579|LCE_ORYLA Low choriolytic enzyme OS=Oryzias latipes GN=lce PE=1 SV=1

 Score =  145 bits (366), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 85/220 (38%), Positives = 124/220 (56%), Gaps = 15/220 (6%)

Query: 1   MEGDILIPRERDSRNLV-LYQAQLWPDKT-----VYYNFEDSEFTIYEKTLVENAIQDLR 54
           +EGD+++P+ R++        +  WP  +     V Y   D+ +   EK  + NA+++  
Sbjct: 61  LEGDLVLPKTRNAMKCFGAPDSCRWPKSSNGIVKVPYVVSDN-YESDEKETIRNAMKEFA 119

Query: 55  MHTCVRFVPRTNQDTYLRFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILH 114
             TC+ FVPR N+  YL      FGC S +GY  +G    + L    C     IQHE+LH
Sbjct: 120 EKTCIHFVPRNNERAYLSLE-PRFGCKSMMGY--VGDKQVVVLQRFGCIKHAVIQHELLH 176

Query: 115 SLGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAF 174
           +LGF+HEHTR DRDQ V++  ENI      N ++  T ++   G PYDYGSIMHY   AF
Sbjct: 177 ALGFYHEHTRSDRDQHVKINWENIIKDFTHNFDKNDTDNL---GTPYDYGSIMHYGRTAF 233

Query: 175 SKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKC 214
            KD   +TI P+ P  +  +GQ + MS +D+ ++N+LYKC
Sbjct: 234 GKDR-KETITPI-PNPKAAIGQTERMSDIDILRVNKLYKC 271

Participates in the breakdown of the egg envelope, which is derived from the egg extracellular matrix, at the time of hatching. Thus allowing the newly hatched fish to swim free. LCE solubilizes the egg envelope only after it has been swollen by the action of HCE.

Oryzias latipes (taxid: 8090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: 6

EC: 6

>sp|O57382|TLL2_XENLA Tolloid-like protein 2 OS=Xenopus laevis GN=tll2 PE=2 SV=1

 Score =  144 bits (364), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 78/213 (36%), Positives = 117/213 (54%), Gaps = 5/213 (2%)

Query: 5   ILIPRERDSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPR 64
           +    +R  R       ++WP   + Y      FT  ++ + + A++  + HTCV FV R
Sbjct: 143 VQTSNDRVRRAATSRTERIWPGGIIPYAIA-GNFTGTQRAIFKQAMRHWKKHTCVTFVER 201

Query: 65  TNQDTYLRFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTR 124
           T++++++ F     GC S VG    G G      G+ C   G + HE+ H +GFWHEHTR
Sbjct: 202 TDEESFIVFTYRPCGCCSYVGRR--GGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTR 259

Query: 125 PDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIV 184
           PDRD+ V ++RENI PG E+N  +   G V + G  YD+ SIMHY+   FS+     TI+
Sbjct: 260 PDRDEHVSIIRENIQPGQEYNFLKMEPGEVSSLGETYDFDSIMHYARNTFSRGVFLDTIL 319

Query: 185 P--LYPGAEDTMGQRDAMSRVDLAKLNRLYKCP 215
           P  +      T+GQR  +S+ D+A+  +LYKCP
Sbjct: 320 PRRIDTSVRPTIGQRIRLSQGDIAQAKKLYKCP 352

Protease which specifically processes prolysyl oxidase and maybe also chordin. Required for the embryonic development. Predominant protease, which in the development, influences dorsal-ventral patterning and skeletogenesis. In embryos, inhibits the development of dorsoanterior structures and ventralizes activin-induced dorsal mesoderm in animal caps.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|Q8JI28|TLL1_XENLA Tolloid-like protein 1 OS=Xenopus laevis GN=tll1 PE=1 SV=1

 Score =  144 bits (364), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 81/213 (38%), Positives = 116/213 (54%), Gaps = 10/213 (4%)

Query: 5   ILIPRERDSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPR 64
           I IPR   SR       ++WP   + Y      FT  ++ + + A++    HTCV F+ R
Sbjct: 138 IRIPRAATSRT-----ERIWPGGVIPYVI-GGNFTGSQRAMFKQAMRHWEKHTCVTFIER 191

Query: 65  TNQDTYLRFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTR 124
           T++++Y+ F     GC S VG    G G      G+ C   G + HE+ H +GFWHEHTR
Sbjct: 192 TDEESYIVFTYRPCGCCSYVGRR--GNGPQAISIGKNCDKFGIVVHELGHVIGFWHEHTR 249

Query: 125 PDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIV 184
           PDRD  V ++RENI PG E+N  +   G V + G  YD+ SIMHY+   FS+     TI+
Sbjct: 250 PDRDDHVTIIRENIQPGQEYNFLKMEPGEVHSLGESYDFDSIMHYARNTFSRGMFLDTIL 309

Query: 185 PLYP--GAEDTMGQRDAMSRVDLAKLNRLYKCP 215
           P     G    +GQR  +S+ D+A+  +LY+CP
Sbjct: 310 PSRDENGLRPPIGQRTRLSKGDIAQARKLYRCP 342

Protease which processes procollagen C-propeptides, such as chordin. Required for the embryonic development. Predominant protease, which in the development, influences dorsal-ventral patterning and skeletogenesis.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|P98070|BMP1_XENLA Bone morphogenetic protein 1 OS=Xenopus laevis GN=bmp1 PE=1 SV=1

 Score =  143 bits (361), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 77/196 (39%), Positives = 109/196 (55%), Gaps = 5/196 (2%)

Query: 22  QLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCA 81
           ++WPD  + Y      F+  ++ +   A++    HTCV F+ RT++D+Y+ F     GC 
Sbjct: 91  RVWPDGVIPYVIS-GNFSGSQRAIFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCC 149

Query: 82  SPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPG 141
           S VG    G G      G+ C   G + HE+ H +GFWHEHTRPDRD  V ++RENI PG
Sbjct: 150 SYVGRR--GGGPQAISIGKNCDKFGIVVHELGHVIGFWHEHTRPDRDDHVSIIRENIQPG 207

Query: 142 HEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYP--GAEDTMGQRDA 199
            E+N  +     V + G  YD+ SIMHY+   FS+     TI+P Y   G    +GQR  
Sbjct: 208 QEYNFLKMEPEEVESLGETYDFDSIMHYARNTFSRGIFLDTILPKYDVNGVRPPIGQRTR 267

Query: 200 MSRVDLAKLNRLYKCP 215
           +S  D+A+  +LYKCP
Sbjct: 268 LSSGDVAQARKLYKCP 283

Metalloprotease involved in pattern formation in gastrula and later differentiation of developing organs. Able to cleave chordin (chrd), suggesting that it may act in dorsoventral patterning during early development by regulating the chordin (chrd) activity.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

>sp|O43897|TLL1_HUMAN Tolloid-like protein 1 OS=Homo sapiens GN=TLL1 PE=1 SV=1

 Score =  142 bits (359), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/244 (34%), Positives = 125/244 (51%), Gaps = 16/244 (6%)

Query: 7   IPRERDSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTN 66
           +PR   SR       ++WP   + Y      FT  ++ + + A++    HTCV F+ R++
Sbjct: 145 VPRAATSRT-----ERIWPGGVIPYVI-GGNFTGSQRAMFKQAMRHWEKHTCVTFIERSD 198

Query: 67  QDTYLRFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPD 126
           +++Y+ F     GC S VG    G G      G+ C   G + HE+ H +GFWHEHTRPD
Sbjct: 199 EESYIVFTYRPCGCCSYVGRR--GNGPQAISIGKNCDKFGIVVHELGHVIGFWHEHTRPD 256

Query: 127 RDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPL 186
           RD  V ++RENI PG E+N  +   G V + G  YD+ SIMHY+   FS+     TI+P 
Sbjct: 257 RDNHVTIIRENIQPGQEYNFLKMEPGEVNSLGERYDFDSIMHYARNTFSRGMFLDTILPS 316

Query: 187 YP--GAEDTMGQRDAMSRVDLAKLNRLYKCPKNYYQGHEFNLERRPAGSVRTFSMPYDYG 244
               G    +GQR  +S+ D+A+  +LY+CP       E N      G++ +   P  Y 
Sbjct: 317 RDDNGIRPAIGQRTRLSKGDIAQARKLYRCPACGETLQESN------GNLSSPGFPNGYP 370

Query: 245 SIMH 248
           S  H
Sbjct: 371 SYTH 374

Protease which processes procollagen C-propeptides, such as chordin, pro-biglycan and pro-lysyl oxidase. Required for the embryonic development. Predominant protease, which in the development, influences dorsal-ventral patterning and skeletogenesis.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 4

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	367
393907845	319	hypothetical protein LOAG_14266 [Loa loa	0.542	0.623	0.410	4e-38
312102078	276	hypothetical protein LOAG_14266 [Loa loa	0.542	0.721	0.410	6e-38
195386974	259	GJ23066 [Drosophila virilis] gi|19414863	0.572	0.810	0.387	1e-37
312068848	439	hypothetical protein LOAG_01820 [Loa loa	0.534	0.446	0.392	4e-37
308491981	512	CRE-NAS-14 protein [Caenorhabditis reman	0.525	0.376	0.438	5e-37
268552525	502	C. briggsae CBR-NAS-14 protein [Caenorha	0.525	0.384	0.438	5e-37
71986189	503	Protein NAS-14 [Caenorhabditis elegans]	0.525	0.383	0.433	5e-37
242011856	453	zinc metalloproteinase, putative [Pedicu	0.564	0.456	0.433	6e-37
341881283	505	CBN-NAS-14 protein [Caenorhabditis brenn	0.525	0.382	0.438	7e-37
208973026	316	hatching enzyme [Engraulis japonicus]	0.558	0.648	0.420	1e-36

>gi|393907845|gb|EFO14257.2| hypothetical protein LOAG_14266 [Loa loa]

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 85/207 (41%), Positives = 127/207 (61%), Gaps = 8/207 (3%)

Query: 12  DSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYL 71
           ++ NL LY+A+LW D  V Y  ED   T  E+ ++  A  D    TC++FVP+T+ D   
Sbjct: 85  NALNLALYKARLWTDGRVPYVLEDG-MTERERVVIAQAFSDYHEKTCIKFVPKTDSDIDY 143

Query: 72  RF--RNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQ 129
            F  R+    C+S VG    G   ++ L    C++KG I HE++H++GF HEH+R +RD+
Sbjct: 144 IFIRRSVPSSCSSFVGR--AGGKQNVLLAAGKCYIKGVIVHELMHAIGFLHEHSRTERDE 201

Query: 130 FVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPG 189
           ++ ++ ENI PG + N ++ P   + + GMPYDY S+MHY   AFS++G   TIVP    
Sbjct: 202 YINIIMENIIPGKQSNFDKYPGKVINSLGMPYDYNSVMHYPEYAFSRNG-KPTIVPKDRK 260

Query: 190 AEDTMGQRDAMSRVDLAKLNRLYKCPK 216
           AE  +GQR  +S +D+ K+N+LYKC K
Sbjct: 261 AE--IGQRYGLSAIDVKKINKLYKCDK 285

Source: Loa loa

Species: Loa loa

Genus: Loa

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|312102078|ref|XP_003149812.1| hypothetical protein LOAG_14266 [Loa loa]

 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 85/207 (41%), Positives = 127/207 (61%), Gaps = 8/207 (3%)

Query: 12  DSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYL 71
           ++ NL LY+A+LW D  V Y  ED   T  E+ ++  A  D    TC++FVP+T+ D   
Sbjct: 42  NALNLALYKARLWTDGRVPYVLEDG-MTERERVVIAQAFSDYHEKTCIKFVPKTDSDIDY 100

Query: 72  RF--RNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQ 129
            F  R+    C+S VG    G   ++ L    C++KG I HE++H++GF HEH+R +RD+
Sbjct: 101 IFIRRSVPSSCSSFVGR--AGGKQNVLLAAGKCYIKGVIVHELMHAIGFLHEHSRTERDE 158

Query: 130 FVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPG 189
           ++ ++ ENI PG + N ++ P   + + GMPYDY S+MHY   AFS++G   TIVP    
Sbjct: 159 YINIIMENIIPGKQSNFDKYPGKVINSLGMPYDYNSVMHYPEYAFSRNG-KPTIVPKDRK 217

Query: 190 AEDTMGQRDAMSRVDLAKLNRLYKCPK 216
           AE  +GQR  +S +D+ K+N+LYKC K
Sbjct: 218 AE--IGQRYGLSAIDVKKINKLYKCDK 242

Source: Loa loa

Species: Loa loa

Genus: Loa

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|195386974|ref|XP_002052179.1| GJ23066 [Drosophila virilis] gi|194148636|gb|EDW64334.1| GJ23066 [Drosophila virilis]

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 84/217 (38%), Positives = 124/217 (57%), Gaps = 7/217 (3%)

Query: 2   EGDILIPRERDSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRF 61
           EGD+ I    D +   L   Q WP  TVYY  E  +FT +++  ++  + ++ M +C+ F
Sbjct: 40  EGDMDIKYTPDGK---LQPTQRWPLATVYYKIEKKKFTAHQEKFIQLGMWNIEMVSCITF 96

Query: 62  VPRTNQ-DTYLRFRNTGFGCASPVGYFPIGTGIDIFLG--GRVCFLKGKIQHEILHSLGF 118
            P   +   YL   ++  GC+S VGY    T I +     G+ CF  G IQHE+LH+LGF
Sbjct: 97  EPAPKEIRDYLLITDSKTGCSSTVGYSKDNTTIKLVPNSIGKGCFNLGTIQHELLHTLGF 156

Query: 119 WHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDG 178
           +H+H   DRD +V+++++NI  G   N ++    S+  FG  YDY SIMHY   AFSK+G
Sbjct: 157 FHQHNYADRDDYVKIVKDNISTGKLVNFQKYAADSLGNFGASYDYESIMHYPSNAFSKNG 216

Query: 179 VSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKCP 215
             +TI+   P  +  MGQRD +S  D+ +LN +Y CP
Sbjct: 217 -GETIIARQPDGQSKMGQRDGLSSADVTRLNNMYNCP 252

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312068848|ref|XP_003137406.1| hypothetical protein LOAG_01820 [Loa loa] gi|307767435|gb|EFO26669.1| hypothetical protein LOAG_01820 [Loa loa]

 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 80/204 (39%), Positives = 125/204 (61%), Gaps = 8/204 (3%)

Query: 15  NLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRF- 73
           N   Y+ +LWP+ ++ Y+ E+   T+ ++  +  A  +    TC++F P+T++D    F 
Sbjct: 45  NFARYKDRLWPNGSIPYSLEEGMSTV-QRVAIAQAFDEFHGKTCIKFAPKTDRDIDFIFI 103

Query: 74  -RNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVR 132
            RNT  GC+S VG    G    + L    CF KG I HE++H++GF+HEH+R DRD+++ 
Sbjct: 104 RRNTASGCSSYVGR--AGGNQTVSLEANKCFAKGIIAHELMHTIGFFHEHSRTDRDEYID 161

Query: 133 VLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAED 192
           +++ENI PG  +N E+ P   + + GMPYDY SIMHY  +AFS +G   TI+P    A  
Sbjct: 162 IIKENIRPGMLWNFEKYPEKVIDSLGMPYDYDSIMHYHRLAFSSNG-HPTILPKNRSAR- 219

Query: 193 TMGQRDAMSRVDLAKLNRLYKCPK 216
            +GQR  +S +D+ K+N+LY C +
Sbjct: 220 -IGQRHGLSDIDVKKINKLYNCSQ 242

Source: Loa loa

Species: Loa loa

Genus: Loa

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|308491981|ref|XP_003108181.1| CRE-NAS-14 protein [Caenorhabditis remanei] gi|308249029|gb|EFO92981.1| CRE-NAS-14 protein [Caenorhabditis remanei]

 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 89/203 (43%), Positives = 123/203 (60%), Gaps = 10/203 (4%)

Query: 15  NLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQD---TYL 71
           NLV Y  +LWP+  V Y  E+   T  ++T +  A  + +  TCVRFVP+T+ D    Y+
Sbjct: 122 NLVTYPDKLWPEGQVPYMLEEG-MTNDQRTAIAQAFDEYKTKTCVRFVPKTDDDFDYIYV 180

Query: 72  RFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFV 131
           + RN  FGC+S VG    G    + L    CF KG I HE++H+LGF+HEH+R DRD FV
Sbjct: 181 K-RNVAFGCSSYVGR--AGGNQTVSLEVDKCFSKGIIAHELMHALGFFHEHSRTDRDDFV 237

Query: 132 RVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAE 191
            +  +NI PG   N E+ P   + + GMPYDY S+MHY  +AFS++G   TIVP     E
Sbjct: 238 DINEDNIRPGMMRNFEKYPRKIIDSLGMPYDYESVMHYHKLAFSRNG-KPTIVP--KDNE 294

Query: 192 DTMGQRDAMSRVDLAKLNRLYKC 214
             +GQR  +S +D  K+N+LY+C
Sbjct: 295 ADVGQRYKLSEMDSKKVNKLYQC 317

Source: Caenorhabditis remanei

Species: Caenorhabditis remanei

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|268552525|ref|XP_002634245.1| C. briggsae CBR-NAS-14 protein [Caenorhabditis briggsae]

 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 89/203 (43%), Positives = 123/203 (60%), Gaps = 10/203 (4%)

Query: 15  NLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQD---TYL 71
           NLV Y  +LWP+  V Y  E+   T  ++T +  A  + +  TCVRFVP+T+ D    Y+
Sbjct: 115 NLVTYPDKLWPEGQVPYMLEEG-MTNDQRTAIAQAFDEYKTKTCVRFVPKTDDDFDYIYV 173

Query: 72  RFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFV 131
           + RN  FGC+S VG    G    + L    CF KG I HE++H+LGF+HEH+R DRD FV
Sbjct: 174 K-RNVAFGCSSYVGR--AGGNQTVSLEVDKCFSKGIIAHELMHALGFFHEHSRTDRDDFV 230

Query: 132 RVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAE 191
            +  +NI PG   N E+ P   + + GMPYDY S+MHY  +AFS++G   TIVP     E
Sbjct: 231 DINEDNIRPGMMRNFEKYPRKIIDSLGMPYDYESVMHYHKLAFSRNG-KPTIVP--KDNE 287

Query: 192 DTMGQRDAMSRVDLAKLNRLYKC 214
             +GQR  +S +D  K+N+LY+C
Sbjct: 288 ADVGQRYKLSEMDSKKVNKLYQC 310

Source: Caenorhabditis briggsae

Species: Caenorhabditis briggsae

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|71986189|ref|NP_502533.2| Protein NAS-14 [Caenorhabditis elegans] gi|57012917|sp|Q19269.2|NAS14_CAEEL RecName: Full=Zinc metalloproteinase nas-14; AltName: Full=Nematode astacin 14; Flags: Precursor gi|37619826|emb|CAA98057.2| Protein NAS-14 [Caenorhabditis elegans]

 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 88/203 (43%), Positives = 123/203 (60%), Gaps = 10/203 (4%)

Query: 15  NLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQD---TYL 71
           NLV Y  +LWP+  V Y  E+   T  ++T +  A  + +  TCVRFVP+T+ D    Y+
Sbjct: 116 NLVTYPDKLWPEGQVPYMLEEG-MTNDQRTAIAQAFDEYKTKTCVRFVPKTDDDFDYIYV 174

Query: 72  RFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFV 131
           + RN  FGC+S VG    G    + L    CF KG I HE++H+LGF+HEH+R DRD FV
Sbjct: 175 K-RNVAFGCSSYVGR--AGGNQTVSLEVDKCFSKGIIAHELMHALGFFHEHSRTDRDDFV 231

Query: 132 RVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAE 191
            +  +NI PG   N E+ P   + + GMPYDY S+MHY  +AFS++G   TI+P     E
Sbjct: 232 DINEDNIRPGMMRNFEKYPRKIIDSLGMPYDYESVMHYHKLAFSRNG-KPTIIP--KDNE 288

Query: 192 DTMGQRDAMSRVDLAKLNRLYKC 214
             +GQR  +S +D  K+N+LY+C
Sbjct: 289 ADVGQRYKLSEMDSKKVNKLYQC 311

Source: Caenorhabditis elegans

Species: Caenorhabditis elegans

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|242011856|ref|XP_002426660.1| zinc metalloproteinase, putative [Pediculus humanus corporis] gi|212510824|gb|EEB13922.1| zinc metalloproteinase, putative [Pediculus humanus corporis]

 Score =  160 bits (406), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 94/217 (43%), Positives = 124/217 (57%), Gaps = 10/217 (4%)

Query: 2   EGDILIPRER----DSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHT 57
           EGDI+         + RN +   +  WP   + Y    +EF   E+ ++  A  D +  T
Sbjct: 103 EGDIVNVNSSYGPANGRNAIRDMSLRWPGGVIPYVIT-AEFDERERAVIAAAFDDYQTKT 161

Query: 58  CVRFVPRTNQDTYLRFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLG 117
           C+RFVPRT Q  Y+     G GC+S VG    G    + LG   C  KG I HE++H+ G
Sbjct: 162 CIRFVPRTTQSDYIYLL-KGSGCSSLVGRN--GQKQQVSLGPG-CVYKGVIIHELMHACG 217

Query: 118 FWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKD 177
           FWHE +RPDRD +V VL +NI PG EFN  +    +V+  G+ YD GS+MHY+  +FSKD
Sbjct: 218 FWHEQSRPDRDNYVSVLWDNIIPGMEFNFNKYDWNTVQGLGVSYDTGSVMHYTRNSFSKD 277

Query: 178 GVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKC 214
           G S TIVPL  G  D +GQR   S  DL KLN+LY+C
Sbjct: 278 GRSPTIVPL-SGDGDFLGQRIGFSEKDLIKLNKLYEC 313

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|341881283|gb|EGT37218.1| CBN-NAS-14 protein [Caenorhabditis brenneri]

 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 89/203 (43%), Positives = 123/203 (60%), Gaps = 10/203 (4%)

Query: 15  NLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQD---TYL 71
           NLV Y  +LWP+  V Y  E+   T  ++T +  A  + +  TCVRFVP+T+ D    Y+
Sbjct: 115 NLVTYPDKLWPEGQVPYMLEEG-MTNDQRTAIAQAFDEYKTKTCVRFVPKTDDDFDYIYV 173

Query: 72  RFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFV 131
           + RN  FGC+S VG    G    + L    CF KG I HE++H+LGF+HEH+R DRD FV
Sbjct: 174 K-RNVAFGCSSYVGR--AGGNQTVSLEVDKCFSKGIIAHELMHALGFFHEHSRTDRDDFV 230

Query: 132 RVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAE 191
            +  +NI PG   N E+ P   + + GMPYDY S+MHY  +AFS++G   TIVP     E
Sbjct: 231 DINEDNIRPGMMRNFEKYPRKIIDSLGMPYDYESVMHYHKLAFSRNG-KPTIVP--KDNE 287

Query: 192 DTMGQRDAMSRVDLAKLNRLYKC 214
             +GQR  +S +D  K+N+LY+C
Sbjct: 288 ADVGQRYKLSDMDSKKVNKLYQC 310

Source: Caenorhabditis brenneri

Species: Caenorhabditis brenneri

Genus: Caenorhabditis

Family: Rhabditidae

Order: Rhabditida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|208973026|dbj|BAG74356.1| hatching enzyme [Engraulis japonicus]

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 92/219 (42%), Positives = 125/219 (57%), Gaps = 14/219 (6%)

Query: 1   MEGDILIPRERDSRNLVLYQAQLWPDK-----TVYYNFEDSEFTIYEKTLVENAIQDLRM 55
           MEGD+ +PR R++   + Y  + WP        V YN  D  +   EK  +E A+  L  
Sbjct: 103 MEGDVALPRTRNAMRCLYYDCK-WPKSRSGLVEVPYNISDYYYA-SEKRTIERAMAALHE 160

Query: 56  HTCVRFVPRTNQDTYLRFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHS 115
            TCVRFVP TNQ  YL    +  GC S VG   IG    + L    C   G +QHE+LH+
Sbjct: 161 KTCVRFVPHTNQLHYLSIE-SKTGCWSLVG--RIGGKQRVSLNAFSCLQNGIVQHELLHA 217

Query: 116 LGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFS 175
           LGF+HEHTR DRDQ+VR+  E++  G   N ++R T ++ T   PYDY S+MHY   A S
Sbjct: 218 LGFYHEHTRSDRDQYVRINWEHVSAGAISNFKKRDTNNLDT---PYDYSSVMHYGRYADS 274

Query: 176 KDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKC 214
              +  TI P+ P A   +GQR+ +S +D+ K+N+LYKC
Sbjct: 275 TSRLHPTITPI-PDASMEIGQRNELSEIDILKINKLYKC 312

Source: Engraulis japonicus

Species: Engraulis japonicus

Genus: Engraulis

Family: Engraulidae

Order: Clupeiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	367
WB|WBGene00003533	503	nas-14 [Caenorhabditis elegans	0.528	0.385	0.435	1.6e-38
FB|FBgn0028945	254	CG7631 [Drosophila melanogaste	0.547	0.791	0.412	2.4e-37
UNIPROTKB|F1M999	989	Bmp1 "Protein Bmp1" [Rattus no	0.555	0.206	0.387	2.1e-34
MGI|MGI:88176	991	Bmp1 "bone morphogenetic prote	0.555	0.205	0.387	2.1e-34
FB|FBgn0028948	253	CG15253 [Drosophila melanogast	0.574	0.833	0.376	2.2e-34
UNIPROTKB|E1BEV7	982	Bt.48679 "Uncharacterized prot	0.555	0.207	0.387	2.7e-34
UNIPROTKB|F1M798	990	Bmp1 "Protein Bmp1" [Rattus no	0.555	0.206	0.387	2.7e-34
UNIPROTKB|E2RJJ6	988	BMP1 "Uncharacterized protein"	0.555	0.206	0.387	3.4e-34
UNIPROTKB|P98070	707	bmp1 "Bone morphogenetic prote	0.555	0.288	0.382	3.8e-34
UNIPROTKB|P13497	986	BMP1 "Bone morphogenetic prote	0.555	0.206	0.387	4.4e-34

WB|WBGene00003533 nas-14 [Caenorhabditis elegans (taxid:6239)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 88/202 (43%), Positives = 122/202 (60%)

Query:    15 NLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQD-TYLRF 73
             NLV Y  +LWP+  V Y  E+   T  ++T +  A  + +  TCVRFVP+T+ D  Y+  
Sbjct:   116 NLVTYPDKLWPEGQVPYMLEEG-MTNDQRTAIAQAFDEYKTKTCVRFVPKTDDDFDYIYV 174

Query:    74 -RNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVR 132
              RN  FGC+S VG    G    + L    CF KG I HE++H+LGF+HEH+R DRD FV 
Sbjct:   175 KRNVAFGCSSYVGR--AGGNQTVSLEVDKCFSKGIIAHELMHALGFFHEHSRTDRDDFVD 232

Query:   133 VLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAED 192
             +  +NI PG   N E+ P   + + GMPYDY S+MHY  +AFS++G   TI+P     E 
Sbjct:   233 INEDNIRPGMMRNFEKYPRKIIDSLGMPYDYESVMHYHKLAFSRNG-KPTIIP--KDNEA 289

Query:   193 TMGQRDAMSRVDLAKLNRLYKC 214
              +GQR  +S +D  K+N+LY+C
Sbjct:   290 DVGQRYKLSEMDSKKVNKLYQC 311

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0028945 CG7631 [Drosophila melanogaster (taxid:7227)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 85/206 (41%), Positives = 121/206 (58%)

Query:    13 SRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRT-NQDTYL 71
             +RN  L + + WP+ TV Y   + EF       ++  +Q +   +C+RFVP   +++ YL
Sbjct:    48 ARNGQLSETRRWPNATVPYRISE-EFDAPHVEYIKLGMQFIEYSSCIRFVPADEDEENYL 106

Query:    72 RFRNTGFGCASPVGYFPIGTGIDIFLGG--RVCFLKGKIQHEILHSLGFWHEHTRPDRDQ 129
                 +  GC+S VGY P    + +  G     CF  G IQHE+LH+LGF H+   P+RD+
Sbjct:   107 FVLPSTSGCSSKVGYQPGERTVKLKPGSLDTGCFKLGTIQHELLHTLGFHHQQCSPNRDE 166

Query:   130 FVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPG 189
             FV+++ ENI  GHE N  +     V  F  PYDYGSI+HYS +AFS +G + TIV L P 
Sbjct:   167 FVKIVEENISEGHEKNFVKYEEDEVGDFDQPYDYGSILHYSSLAFSINGEA-TIVALNPE 225

Query:   190 AEDTMGQRDAMSRVDLAKLNRLYKCP 215
              ++ MGQR  MS  D+ +LN +YKCP
Sbjct:   226 GQEQMGQRLMMSDTDVKRLNTMYKCP 251

GO:0004222 "metalloendopeptidase activity" evidence=ISS

GO:0006508 "proteolysis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

UNIPROTKB|F1M999 Bmp1 "Protein Bmp1" [Rattus norvegicus (taxid:10116)]

 Score = 384 (140.2 bits), Expect = 2.1e-34, P = 2.1e-34
 Identities = 81/209 (38%), Positives = 116/209 (55%)

Query:     9 RERDSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQD 68
             R R  R       ++WPD  + +      FT  ++ +   A++    HTCV F+ RT++D
Sbjct:   118 RPRSRRAATSRPERVWPDGVIPFVI-GGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDED 176

Query:    69 TYLRFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRD 128
             +Y+ F     GC S VG    G G      G+ C   G + HE+ H +GFWHEHTRPDRD
Sbjct:   177 SYIVFTYRPCGCCSYVGRR--GGGPQAISIGKNCDKFGIVVHELGHVIGFWHEHTRPDRD 234

Query:   129 QFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYP 188
             + V ++RENI PG E+N  +     V + G  YD+ SIMHY+   FS+     TIVP Y 
Sbjct:   235 RHVSIVRENIQPGQEYNFLKMEVQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYE 294

Query:   189 --GAEDTMGQRDAMSRVDLAKLNRLYKCP 215
               G + ++GQR  +S+ D+A+  +LYKCP
Sbjct:   295 VNGVKPSIGQRTRLSKGDIAQARKLYKCP 323

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:88176 Bmp1 "bone morphogenetic protein 1" [Mus musculus (taxid:10090)]

 Score = 384 (140.2 bits), Expect = 2.1e-34, P = 2.1e-34
 Identities = 81/209 (38%), Positives = 116/209 (55%)

Query:     9 RERDSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQD 68
             R R  R       ++WPD  + +      FT  ++ +   A++    HTCV F+ RT++D
Sbjct:   120 RPRSRRAATSRPERVWPDGVIPFVI-GGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDED 178

Query:    69 TYLRFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRD 128
             +Y+ F     GC S VG    G G      G+ C   G + HE+ H +GFWHEHTRPDRD
Sbjct:   179 SYIVFTYRPCGCCSYVGRR--GGGPQAISIGKNCDKFGIVVHELGHVIGFWHEHTRPDRD 236

Query:   129 QFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYP 188
             + V ++RENI PG E+N  +     V + G  YD+ SIMHY+   FS+     TIVP Y 
Sbjct:   237 RHVSIVRENIQPGQEYNFLKMEVQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYE 296

Query:   189 --GAEDTMGQRDAMSRVDLAKLNRLYKCP 215
               G + ++GQR  +S+ D+A+  +LYKCP
Sbjct:   297 VNGVKPSIGQRTRLSKGDIAQARKLYKCP 325

GO:0001503 "ossification" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IDA;TAS

GO:0005125 "cytokine activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005576 "extracellular region" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0005615 "extracellular space" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006508 "proteolysis" evidence=ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008083 "growth factor activity" evidence=IEA

GO:0008152 "metabolic process" evidence=TAS

GO:0008233 "peptidase activity" evidence=ISO

GO:0008237 "metallopeptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0031988 "membrane-bounded vesicle" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051216 "cartilage development" evidence=IEA

GO:0061036 "positive regulation of cartilage development" evidence=ISO

FB|FBgn0028948 CG15253 [Drosophila melanogaster (taxid:7227)]

 Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 82/218 (37%), Positives = 124/218 (56%)

Query:     1 MEGDILIPRERDSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVR 60
             +EGD ++P    SRN+   +   WP++ +YY+  +S      +  + +AIQ +   +C+ 
Sbjct:    36 IEGD-MVP-SGSSRNIWRNETYRWPNRIIYYHI-NSYIDEEHRNHIVSAIQKIESISCLT 92

Query:    61 FVPRT-NQDTYLRFRNTGFGCASPVGYFPIGTGIDIFLG--GRVCFLKGKIQHEILHSLG 117
             F   T +Q  Y+   +   GC S +GY      +++     G  CF    I HE LH+LG
Sbjct:    93 FKEATTDQKYYVNVTSEEGGCFSYIGYLNRVQQLNLQNNEIGVGCFRLYTIVHEFLHALG 152

Query:   118 FWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKD 177
             F+H+ +  DRD +V+++ ENI  G EFN ++    +V  FG  YDYGS+MHY   AFSK+
Sbjct:   153 FFHQQSAADRDDYVQIVEENITEGMEFNFDKYTEETVNDFGEKYDYGSVMHYGPYAFSKN 212

Query:   178 GVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKCP 215
             G  +TI+ L  G ED +GQR  +S  D+ KLN +YKCP
Sbjct:   213 G-ERTILALEEGKEDVIGQRLELSETDIRKLNAIYKCP 249

GO:0004222 "metalloendopeptidase activity" evidence=ISS

GO:0006508 "proteolysis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1BEV7 Bt.48679 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 383 (139.9 bits), Expect = 2.7e-34, P = 2.7e-34
 Identities = 81/209 (38%), Positives = 115/209 (55%)

Query:     9 RERDSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQD 68
             R R  R       ++WPD  + +      FT  ++ +   A++    HTCV F+ RT++D
Sbjct:   117 RSRSRRAATSRPERVWPDGVIPFVI-GGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDED 175

Query:    69 TYLRFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRD 128
             +Y+ F     GC S VG    G G      G+ C   G + HE+ H +GFWHEHTRPDRD
Sbjct:   176 SYIVFTYRPCGCCSYVGRR--GGGPQAISIGKNCDKFGIVVHELGHVIGFWHEHTRPDRD 233

Query:   129 QFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYP 188
             + V ++RENI PG E+N  +     V + G  YD+ SIMHY+   FS+     TIVP Y 
Sbjct:   234 RHVSIVRENIQPGQEYNFLKMEVQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYE 293

Query:   189 --GAEDTMGQRDAMSRVDLAKLNRLYKCP 215
               G +  +GQR  +S+ D+A+  +LYKCP
Sbjct:   294 VNGVKPPIGQRTRLSKGDIAQARKLYKCP 322

GO:0061036 "positive regulation of cartilage development" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F1M798 Bmp1 "Protein Bmp1" [Rattus norvegicus (taxid:10116)]

 Score = 383 (139.9 bits), Expect = 2.7e-34, P = 2.7e-34
 Identities = 81/209 (38%), Positives = 116/209 (55%)

Query:     9 RERDSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQD 68
             R R  R       ++WPD  + +      FT  ++ +   A++    HTCV F+ RT++D
Sbjct:   119 RPRSRRAATSRPERVWPDGVIPFVI-GGNFTGDQRAVFRQAMRHWEKHTCVTFLERTDED 177

Query:    69 TYLRFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRD 128
             +Y+ F     GC S VG    G G      G+ C   G + HE+ H +GFWHEHTRPDRD
Sbjct:   178 SYIVFTYRPCGCCSYVGRR--GGGPQAISIGKNCDKFGIVVHELGHVIGFWHEHTRPDRD 235

Query:   129 QFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYP 188
             + V ++RENI PG E+N  +     V + G  YD+ SIMHY+   FS+     TIVP Y 
Sbjct:   236 RHVSIVRENIQPGQEYNFLKMEVQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYE 295

Query:   189 --GAEDTMGQRDAMSRVDLAKLNRLYKCP 215
               G + ++GQR  +S+ D+A+  +LYKCP
Sbjct:   296 VNGVKPSIGQRTRLSKGDIAQARKLYKCP 324

GO:0004222 "metalloendopeptidase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E2RJJ6 BMP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 382 (139.5 bits), Expect = 3.4e-34, P = 3.4e-34
 Identities = 81/209 (38%), Positives = 115/209 (55%)

Query:     9 RERDSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQD 68
             R R  R       ++WPD  + +      FT  ++ +   A++    HTCV F+ RT++D
Sbjct:   117 RSRSRRAATSRPERVWPDGVIPFVI-GGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDED 175

Query:    69 TYLRFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRD 128
             +Y+ F     GC S VG    G G      G+ C   G + HE+ H +GFWHEHTRPDRD
Sbjct:   176 SYIVFTYRPCGCCSYVGRR--GGGPQAISIGKNCDKFGIVVHELGHVIGFWHEHTRPDRD 233

Query:   129 QFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYP 188
             + V ++RENI PG E+N  +     V + G  YD+ SIMHY+   FS+     TIVP Y 
Sbjct:   234 RHVSIVRENIQPGQEYNFLKMELQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYE 293

Query:   189 --GAEDTMGQRDAMSRVDLAKLNRLYKCP 215
               G +  +GQR  +S+ D+A+  +LYKCP
Sbjct:   294 VNGVKPPIGQRTRLSKGDIAQARKLYKCP 322

GO:0006508 "proteolysis" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0004222 "metalloendopeptidase activity" evidence=IEA

UNIPROTKB|P98070 bmp1 "Bone morphogenetic protein 1" [Xenopus laevis (taxid:8355)]

 Score = 378 (138.1 bits), Expect = 3.8e-34, P = 3.8e-34
 Identities = 80/209 (38%), Positives = 114/209 (54%)

Query:     9 RERDSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQD 68
             R R+ R       ++WPD  + Y    + F+  ++ +   A++    HTCV F+ RT++D
Sbjct:    78 RSREKRASTSRPERVWPDGVIPYVISGN-FSGSQRAIFRQAMRHWEKHTCVTFLERTDED 136

Query:    69 TYLRFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRD 128
             +Y+ F     GC S VG    G G      G+ C   G + HE+ H +GFWHEHTRPDRD
Sbjct:   137 SYIVFTYRPCGCCSYVGRR--GGGPQAISIGKNCDKFGIVVHELGHVIGFWHEHTRPDRD 194

Query:   129 QFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYP 188
               V ++RENI PG E+N  +     V + G  YD+ SIMHY+   FS+     TI+P Y 
Sbjct:   195 DHVSIIRENIQPGQEYNFLKMEPEEVESLGETYDFDSIMHYARNTFSRGIFLDTILPKYD 254

Query:   189 --GAEDTMGQRDAMSRVDLAKLNRLYKCP 215
               G    +GQR  +S  D+A+  +LYKCP
Sbjct:   255 VNGVRPPIGQRTRLSSGDVAQARKLYKCP 283

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|P13497 BMP1 "Bone morphogenetic protein 1" [Homo sapiens (taxid:9606)]

 Score = 381 (139.2 bits), Expect = 4.4e-34, P = 4.4e-34
 Identities = 81/209 (38%), Positives = 115/209 (55%)

Query:     9 RERDSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQD 68
             R R  R       ++WPD  + +      FT  ++ +   A++    HTCV F+ RT++D
Sbjct:   115 RSRSRRAATSRPERVWPDGVIPFVI-GGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDED 173

Query:    69 TYLRFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRD 128
             +Y+ F     GC S VG    G G      G+ C   G + HE+ H +GFWHEHTRPDRD
Sbjct:   174 SYIVFTYRPCGCCSYVGRR--GGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRD 231

Query:   129 QFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYP 188
             + V ++RENI PG E+N  +     V + G  YD+ SIMHY+   FS+     TIVP Y 
Sbjct:   232 RHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYE 291

Query:   189 --GAEDTMGQRDAMSRVDLAKLNRLYKCP 215
               G +  +GQR  +S+ D+A+  +LYKCP
Sbjct:   292 VNGVKPPIGQRTRLSKGDIAQARKLYKCP 320

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0001503 "ossification" evidence=IEA

GO:0005125 "cytokine activity" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0008083 "growth factor activity" evidence=IEA

GO:0030154 "cell differentiation" evidence=IEA

GO:0005578 "proteinaceous extracellular matrix" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0008237 "metallopeptidase activity" evidence=NAS

GO:0001501 "skeletal system development" evidence=NAS

GO:0006508 "proteolysis" evidence=IDA

GO:0008233 "peptidase activity" evidence=IDA

GO:0001502 "cartilage condensation" evidence=TAS

GO:0007275 "multicellular organismal development" evidence=TAS

GO:0061036 "positive regulation of cartilage development" evidence=IDA

GO:0004222 "metalloendopeptidase activity" evidence=TAS

GO:0005576 "extracellular region" evidence=TAS

GO:0006629 "lipid metabolic process" evidence=TAS

GO:0030198 "extracellular matrix organization" evidence=TAS

GO:0042157 "lipoprotein metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.24.21	0.737
3rd Layer	3.4.24	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	367
cd04280	180	cd04280, ZnMc_astacin_like, Zinc-dependent metallo	1e-71
pfam01400	191	pfam01400, Astacin, Astacin (Peptidase family M12A	8e-71
cd04283	182	cd04283, ZnMc_hatching_enzyme, Zinc-dependent meta	2e-54
cd04281	200	cd04281, ZnMc_BMP1_TLD, Zinc-dependent metalloprot	4e-49
cd04282	230	cd04282, ZnMc_meprin, Zinc-dependent metalloprotea	1e-42
smart00235	139	smart00235, ZnMc, Zinc-dependent metalloprotease	4e-32
pfam01400	191	pfam01400, Astacin, Astacin (Peptidase family M12A	6e-24
cd04280	180	cd04280, ZnMc_astacin_like, Zinc-dependent metallo	6e-22
cd04283	182	cd04283, ZnMc_hatching_enzyme, Zinc-dependent meta	6e-16
cd04281	200	cd04281, ZnMc_BMP1_TLD, Zinc-dependent metalloprot	1e-13
cd04282	230	cd04282, ZnMc_meprin, Zinc-dependent metalloprotea	7e-13
cd00203	167	cd00203, ZnMc, Zinc-dependent metalloprotease	9e-12
cd04268	165	cd04268, ZnMc_MMP_like, Zinc-dependent metalloprot	2e-09
cd04327	198	cd04327, ZnMc_MMP_like_3, Zinc-dependent metallopr	0.002

>gnl|CDD|239807 cd04280, ZnMc_astacin_like, Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site

 Score =  221 bits (565), Expect = 1e-71
 Identities = 82/187 (43%), Positives = 121/187 (64%), Gaps = 7/187 (3%)

Query: 26  DKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCASPVG 85
           + TV Y   D  F   +++L+  A++++  +TC+RFVPRT +  Y+R    G GC S VG
Sbjct: 1   NGTVPYVI-DGSFDESDRSLILRAMREIESNTCIRFVPRTTEKDYIRIVK-GSGCWSYVG 58

Query: 86  YFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGHEFN 145
              +G    + LG   CF  G I HE++H+LGF+HE +RPDRD +V +  ENI PG+E N
Sbjct: 59  R--VGGRQVVSLG-SGCFSLGTIVHELMHALGFYHEQSRPDRDDYVTINWENIQPGYEHN 115

Query: 146 LERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDL 205
            ++    +V T+G+PYDYGS+MHY   AFSK+G   TIVP  PG +  +GQR+ +S +D+
Sbjct: 116 FDKYSPDTVTTYGVPYDYGSVMHYGPTAFSKNG-KPTIVPKDPGYQI-IGQREGLSFLDI 173

Query: 206 AKLNRLY 212
            K+N++Y
Sbjct: 174 KKINKMY 180

Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development. Length = 180

>gnl|CDD|201773 pfam01400, Astacin, Astacin (Peptidase family M12A)

 Score =  219 bits (559), Expect = 8e-71
 Identities = 87/194 (44%), Positives = 113/194 (58%), Gaps = 4/194 (2%)

Query: 22  QLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCA 81
           + WP+  + Y  + S FT   + L+  A++     TC+RFVPRT  D    F   G GC 
Sbjct: 1   RKWPNGPIPYVIDSS-FTGLARALIRQAMRHWEQKTCIRFVPRTAGDNNYLFFFKGDGCY 59

Query: 82  SPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPG 141
           S VG    G    + LG   C   G I HE+ H+LGFWHE +RPDRD +V +  +NI PG
Sbjct: 60  SYVG--RNGGAQPVSLG-NGCDKFGIIVHELGHALGFWHEQSRPDRDDYVSINWQNIDPG 116

Query: 142 HEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMS 201
            E N E+     V + G+PYDYGSIMHY   AFSK+G   TIVP     + T+GQRD +S
Sbjct: 117 QEGNFEKYDPDEVDSLGVPYDYGSIMHYGPYAFSKNGYLPTIVPKDNDYQATIGQRDKLS 176

Query: 202 RVDLAKLNRLYKCP 215
             D+ K+N+LYKCP
Sbjct: 177 FGDIEKINKLYKCP 190

The members of this family are enzymes that cleave peptides. These proteases require zinc for catalysis. Members of this family contain two conserved disulphide bridges, these are joined 1-4 and 2-3. Members of this family have an amino terminal propeptide which is cleaved to give the active protease domain. All other linked domains are found to the carboxyl terminus of this domain. This family includes: Astacin, a digestive enzyme from Crayfish. Meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain. Proteins involved in morphogenesis such as human bone morphogenetic protein 1, and Tolloid from Drosophila melanogaster. Length = 191

>gnl|CDD|239810 cd04283, ZnMc_hatching_enzyme, Zinc-dependent metalloprotease, hatching enzyme-like subfamily

 Score =  176 bits (449), Expect = 2e-54
 Identities = 76/180 (42%), Positives = 110/180 (61%), Gaps = 8/180 (4%)

Query: 35  DSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCASPVGYFPIGTGID 94
             +++  E+ ++E A+Q+    TCVRFVPRT +  YL   +   GC S +G    G    
Sbjct: 11  SPQYSENERAVIEKAMQEFETLTCVRFVPRTTERDYLNIES-RSGCWSYIGR--QGGRQT 67

Query: 95  IFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSV 154
           + L  + C  KG IQHE+LH+LGF+HE TR DRD++VR+  ENI P   +N +++ T ++
Sbjct: 68  VSLQKQGCMYKGIIQHELLHALGFYHEQTRSDRDKYVRINWENIIPDQLYNFDKQDTNNL 127

Query: 155 RTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKC 214
            T   PYDY S+MHY   AFS +G   TIVP+ P     +GQR  MS +D+ ++N+LY C
Sbjct: 128 GT---PYDYSSVMHYGRYAFSING-KPTIVPI-PDPNVPIGQRQGMSNLDILRINKLYNC 182

Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion. Length = 182

>gnl|CDD|239808 cd04281, ZnMc_BMP1_TLD, Zinc-dependent metalloprotease; BMP1/TLD-like subfamily

 Score =  163 bits (415), Expect = 4e-49
 Identities = 78/199 (39%), Positives = 109/199 (54%), Gaps = 7/199 (3%)

Query: 20  QAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFG 79
           + ++WP   + Y   D  FT  ++ + + A++     TCV FV RT ++ Y+ F     G
Sbjct: 6   KERIWPGGVIPYVI-DGNFTGSQRAMFKQAMRHWENFTCVTFVERTPEENYIVFTYRPCG 64

Query: 80  CASPVGYFPIG-TGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENI 138
           C S VG    G   I I   G+ C   G + HE+ H +GFWHEHTRPDRD  V ++RENI
Sbjct: 65  CCSYVGRRGNGPQAISI---GKNCDKFGIVVHELGHVIGFWHEHTRPDRDDHVTIIRENI 121

Query: 139 GPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLY--PGAEDTMGQ 196
            PG E+N  +     V + G PYD+ SIMHY+   FS+     TI+P     G    +GQ
Sbjct: 122 QPGQEYNFLKMEPEEVDSLGEPYDFDSIMHYARNTFSRGMFLDTILPKRDPNGVRPEIGQ 181

Query: 197 RDAMSRVDLAKLNRLYKCP 215
           R  +S  D+ + N+LYKCP
Sbjct: 182 RTRLSEGDIIQANKLYKCP 200

BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning. Length = 200

>gnl|CDD|239809 cd04282, ZnMc_meprin, Zinc-dependent metalloprotease, meprin_like subfamily

 Score =  148 bits (375), Expect = 1e-42
 Identities = 77/213 (36%), Positives = 109/213 (51%), Gaps = 7/213 (3%)

Query: 2   EGDILIPRERDSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRF 61
           EGDIL+   + SRN ++     WP   + Y  +DS   +  K ++  A +  R+ +CV F
Sbjct: 25  EGDILLDEGQ-SRNGLIGDTYRWP-FPIPYILDDS-LDLNAKGVILKAFEMYRLKSCVDF 81

Query: 62  VPRTNQDTYLRFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHE 121
            P   +  Y+ F   G GC S VG    G  + I   G  C  K  ++HE LH+LGF+HE
Sbjct: 82  KPYEGESNYIFFFK-GSGCWSMVGDQQGGQNLSI---GAGCDYKATVEHEFLHALGFYHE 137

Query: 122 HTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSK 181
            +R DRD +V++  + I  G E N  +           PYDY S+MHYS  +F+K     
Sbjct: 138 QSRSDRDDYVKIWWDQILSGREHNFNKYDDSFSTDLNTPYDYESVMHYSPFSFNKGASEP 197

Query: 182 TIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKC 214
           TI    P   D +GQR   S +DL +LNR+Y C
Sbjct: 198 TITTKIPEFNDIIGQRLDFSDIDLERLNRMYNC 230

Meprins are membrane-bound or secreted extracellular proteases, which cleave a variety of targets, including peptides such as parathyroid hormone, gastrin, and cholecystokinin, cytokines such as osteopontin, and proteins such as collagen IV, fibronectin, casein and gelatin. Meprins may also be able to release proteins from the cell surface. Closely related meprin alpha- and beta-subunits form homo- and hetero-oligomers; these complexes are found on epithelial cells of the intestine, for example, and are also expressed in certain cancer cells. Length = 230

>gnl|CDD|214576 smart00235, ZnMc, Zinc-dependent metalloprotease

 Score =  117 bits (295), Expect = 4e-32
 Identities = 47/146 (32%), Positives = 69/146 (47%), Gaps = 11/146 (7%)

Query: 22  QLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRT-NQDTYLRFRNTGFGC 80
           + WP  TV Y  + S  +  E+  +  A+ +    TC+RFV RT   D Y+ F +   GC
Sbjct: 3   KKWPKGTVPYVIDSSSLSPEEREAIAKALAEWSDVTCIRFVERTGTADIYISFGSGDSGC 62

Query: 81  ASPVGYFPIG-TGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIG 139
                  P G   + +   G  C   G   HE+ H+LG +HE +R DRD ++ +   NI 
Sbjct: 63  TLSHAGRPGGDQHLSL---GNGCINTGVAAHELGHALGLYHEQSRSDRDNYMYINYTNID 119

Query: 140 PGHEFNLERRPTGSVRTFGMPYDYGS 165
             + F+L           G+PYDYGS
Sbjct: 120 TRN-FDL---SEDDSL--GIPYDYGS 139

Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site. Length = 139

>gnl|CDD|201773 pfam01400, Astacin, Astacin (Peptidase family M12A)

 Score = 96.9 bits (242), Expect = 6e-24
 Identities = 38/75 (50%), Positives = 48/75 (64%)

Query: 221 GHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAM 280
           G E N E+     V +  +PYDYGSIMHY   AFSK+G   TIVP     + T+GQRD +
Sbjct: 116 GQEGNFEKYDPDEVDSLGVPYDYGSIMHYGPYAFSKNGYLPTIVPKDNDYQATIGQRDKL 175

Query: 281 SRVDLAKLNRLYKCP 295
           S  D+ K+N+LYKCP
Sbjct: 176 SFGDIEKINKLYKCP 190

The members of this family are enzymes that cleave peptides. These proteases require zinc for catalysis. Members of this family contain two conserved disulphide bridges, these are joined 1-4 and 2-3. Members of this family have an amino terminal propeptide which is cleaved to give the active protease domain. All other linked domains are found to the carboxyl terminus of this domain. This family includes: Astacin, a digestive enzyme from Crayfish. Meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain. Proteins involved in morphogenesis such as human bone morphogenetic protein 1, and Tolloid from Drosophila melanogaster. Length = 191

>gnl|CDD|239807 cd04280, ZnMc_astacin_like, Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site

 Score = 91.1 bits (227), Expect = 6e-22
 Identities = 33/72 (45%), Positives = 50/72 (69%), Gaps = 2/72 (2%)

Query: 221 GHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAM 280
           G+E N ++    +V T+ +PYDYGS+MHY   AFSK+G   TIVP  PG +  +GQR+ +
Sbjct: 111 GYEHNFDKYSPDTVTTYGVPYDYGSVMHYGPTAFSKNG-KPTIVPKDPGYQI-IGQREGL 168

Query: 281 SRVDLAKLNRLY 292
           S +D+ K+N++Y
Sbjct: 169 SFLDIKKINKMY 180

Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development. Length = 180

>gnl|CDD|239810 cd04283, ZnMc_hatching_enzyme, Zinc-dependent metalloprotease, hatching enzyme-like subfamily

 Score = 74.6 bits (184), Expect = 6e-16
 Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 240 PYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKC 294
           PYDY S+MHY   AFS +G   TIVP+ P     +GQR  MS +D+ ++N+LY C
Sbjct: 130 PYDYSSVMHYGRYAFSING-KPTIVPI-PDPNVPIGQRQGMSNLDILRINKLYNC 182

Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion. Length = 182

>gnl|CDD|239808 cd04281, ZnMc_BMP1_TLD, Zinc-dependent metalloprotease; BMP1/TLD-like subfamily

 Score = 68.6 bits (168), Expect = 1e-13
 Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 2/82 (2%)

Query: 216 KNYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLY--PGAEDT 273
           +N   G E+N  +     V +   PYD+ SIMHY+   FS+     TI+P     G    
Sbjct: 119 ENIQPGQEYNFLKMEPEEVDSLGEPYDFDSIMHYARNTFSRGMFLDTILPKRDPNGVRPE 178

Query: 274 MGQRDAMSRVDLAKLNRLYKCP 295
           +GQR  +S  D+ + N+LYKCP
Sbjct: 179 IGQRTRLSEGDIIQANKLYKCP 200

BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning. Length = 200

>gnl|CDD|239809 cd04282, ZnMc_meprin, Zinc-dependent metalloprotease, meprin_like subfamily

 Score = 67.1 bits (164), Expect = 7e-13
 Identities = 29/74 (39%), Positives = 38/74 (51%)

Query: 221 GHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAM 280
           G E N  +         + PYDY S+MHYS  +F+K     TI    P   D +GQR   
Sbjct: 157 GREHNFNKYDDSFSTDLNTPYDYESVMHYSPFSFNKGASEPTITTKIPEFNDIIGQRLDF 216

Query: 281 SRVDLAKLNRLYKC 294
           S +DL +LNR+Y C
Sbjct: 217 SDIDLERLNRMYNC 230

Meprins are membrane-bound or secreted extracellular proteases, which cleave a variety of targets, including peptides such as parathyroid hormone, gastrin, and cholecystokinin, cytokines such as osteopontin, and proteins such as collagen IV, fibronectin, casein and gelatin. Meprins may also be able to release proteins from the cell surface. Closely related meprin alpha- and beta-subunits form homo- and hetero-oligomers; these complexes are found on epithelial cells of the intestine, for example, and are also expressed in certain cancer cells. Length = 230

>gnl|CDD|238124 cd00203, ZnMc, Zinc-dependent metalloprotease

 Score = 62.5 bits (152), Expect = 9e-12
 Identities = 43/191 (22%), Positives = 67/191 (35%), Gaps = 48/191 (25%)

Query: 33  FEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRT--NQDTYLRFRNTGFGCASPVGYFP-I 89
            E+   +   ++L+  A+Q  R +  +RFV          +    T        G +  +
Sbjct: 14  VEEENLSAQIQSLILIAMQIWRDYLNIRFVLVGVEIDKADIAILVTRQDFDGGTGGWAYL 73

Query: 90  GTGIDIFLG----GRVCF----LKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPG 141
           G   D   G                 I HE+ H+LGF+H+H R DRD +           
Sbjct: 74  GRVCDSLRGVGVLQDNQSGTKEGAQTIAHELGHALGFYHDHDRKDRDDY----------- 122

Query: 142 HEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMS 201
                   PT          DY S+M Y+  +FS                   GQR   S
Sbjct: 123 --------PTIDDTLNAEDDDYYSVMSYTKGSFS------------------DGQRKDFS 156

Query: 202 RVDLAKLNRLY 212
           + D+ ++N+LY
Sbjct: 157 QCDIDQINKLY 167

This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease. Length = 167

>gnl|CDD|239796 cd04268, ZnMc_MMP_like, Zinc-dependent metalloprotease, MMP_like subfamily

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 38/202 (18%), Positives = 61/202 (30%), Gaps = 54/202 (26%)

Query: 27  KTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDT-YLRF-----RNTGFGC 80
           K + Y  +DS      +  + +AI+       + F    + D   +R+          G 
Sbjct: 2   KPITYYIDDS-VPDKLRAAILDAIEAWNKAFAIGFKNANDVDPADIRYSVIRWIPYNDGT 60

Query: 81  ASPVGYFPIGTGIDIFLGGRVC----------FLKGKIQHEILHSLGFWHEHTRPDRDQF 130
            S           +I L                L+   +HE+ H+LG  H     DRD  
Sbjct: 61  WSYGPSQVDPLTGEILLARVYLYSSFVEYSGARLRNTAEHELGHALGLRHNFAASDRDDN 120

Query: 131 VRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGA 190
           V +L E                         D  S+M Y+   FS               
Sbjct: 121 VDLLAE-----------------------KGDTSSVMDYAPSNFSIQLGD---------- 147

Query: 191 EDTMGQRDAMSRVDLAKLNRLY 212
               GQ+  +   D+A + +LY
Sbjct: 148 ----GQKYTIGPYDIAAIKKLY 165

This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases. Length = 165

>gnl|CDD|239819 cd04327, ZnMc_MMP_like_3, Zinc-dependent metalloprotease; MMP_like sub-family 3

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 22/77 (28%), Positives = 26/77 (33%), Gaps = 19/77 (24%)

Query: 108 IQHEILHSLGFWHEHTRPD----------RDQFVRV----LRENIGPGHEFNLERRPTGS 153
           + HE  H+LGF HEH  P              F           I   +     +   G 
Sbjct: 96  VLHEFGHALGFIHEHQSPAANIPWDKEAVYAYFSGPPNWDRETVI---NHNVFAKLDDGD 152

Query: 154 VRTFGMPYDYGSIMHYS 170
           V     PYD  SIMHY 
Sbjct: 153 VAY--SPYDPDSIMHYP 167

A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin. Length = 198

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	367
cd04282	230	ZnMc_meprin Zinc-dependent metalloprotease, meprin	100.0
cd04281	200	ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1	100.0
cd04283	182	ZnMc_hatching_enzyme Zinc-dependent metalloproteas	100.0
) family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01400">PF01400	191	Astacin: Astacin (Peptidase family M12A) This Pros	100.0
KOG3714|consensus	411		100.0
cd04280	180	ZnMc_astacin_like Zinc-dependent metalloprotease,	100.0
cd04327	198	ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MM	100.0
smart00235	140	ZnMc Zinc-dependent metalloprotease. Neutral zinc	99.96
cd04268	165	ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_	99.96
KOG3714|consensus	411		99.88
cd04281	200	ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1	99.88
cd04282	230	ZnMc_meprin Zinc-dependent metalloprotease, meprin	99.87
cd04283	182	ZnMc_hatching_enzyme Zinc-dependent metalloproteas	99.83
cd00203	167	ZnMc Zinc-dependent metalloprotease. This super-fa	99.81
) family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF01400">PF01400	191	Astacin: Astacin (Peptidase family M12A) This Pros	99.78
cd04280	180	ZnMc_astacin_like Zinc-dependent metalloprotease,	99.75
cd04278	157	ZnMc_MMP Zinc-dependent metalloprotease, matrix me	99.7
cd04277	186	ZnMc_serralysin_like Zinc-dependent metalloproteas	99.55
cd04279	156	ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MM	99.5
PF00413	154	Peptidase_M10: Matrixin This Prosite motif covers	99.47
cd04327	198	ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MM	99.24
PF12388	211	Peptidase_M57: Dual-action HEIGH metallo-peptidase	98.97
cd04276	197	ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MM	98.55
KOG1565|consensus	469		98.5
cd04268	165	ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_	97.72
PF02031	132	Peptidase_M7: Streptomyces extracellular neutral p	97.65
COG5549	236	Predicted Zn-dependent protease [Posttranslational	97.2
PF13583	206	Reprolysin_4: Metallo-peptidase family M12B Reprol	95.73
PF13582	124	Reprolysin_3: Metallo-peptidase family M12B Reprol	95.58
PF13574	173	Reprolysin_2: Metallo-peptidase family M12B Reprol	95.45
PF05548	314	Peptidase_M11: Gametolysin peptidase M11; InterPro	95.34
PF05572	154	Peptidase_M43: Pregnancy-associated plasma protein	95.24
cd04267	192	ZnMc_ADAM_like Zinc-dependent metalloprotease, ADA	94.94
cd00203	167	ZnMc Zinc-dependent metalloprotease. This super-fa	94.8
smart00042	102	CUB Domain first found in C1r, C1s, uEGF, and bone	94.76
PF13688	196	Reprolysin_5: Metallo-peptidase family M12; PDB: 2	94.49
cd04275	225	ZnMc_pappalysin_like Zinc-dependent metalloproteas	93.92
cd00041	113	CUB CUB domain; extracellular domain; present in p	93.61
COG1913	181	Predicted Zn-dependent proteases [General function	93.31
cd04269	194	ZnMc_adamalysin_II_like Zinc-dependent metalloprot	93.2
cd04272	220	ZnMc_salivary_gland_MPs Zinc-dependent metalloprot	93.04
TIGR03296	286	M6dom_TIGR03296 M6 family metalloprotease domain.	92.95
PF00431	110	CUB: CUB domain CUB domain entry Spermadhesins fam	92.4
cd04271	228	ZnMc_ADAM_fungal Zinc-dependent metalloprotease, A	92.16
PRK13267	179	archaemetzincin-like protein; Reviewed	91.96
cd04270	244	ZnMc_TACE_like Zinc-dependent metalloprotease; TAC	91.95
PF07998	194	Peptidase_M54: Peptidase family M54; InterPro: IPR	91.79
cd04273	207	ZnMc_ADAMTS_like Zinc-dependent metalloprotease, A	91.68
PF01421	199	Reprolysin: Reprolysin (M12B) family zinc metallop	90.18
PF11350	203	DUF3152: Protein of unknown function (DUF3152); In	89.25
PF10462	305	Peptidase_M66: Peptidase M66; InterPro: IPR019503	89.03
cd02641	60	R3H_Smubp-2_like R3H domain of Smubp-2_like protei	86.81
PTZ00337	567	surface protease GP63; Provisional	86.06
PF12044	423	Metallopep: Putative peptidase family; InterPro: I	85.62
PF01457	521	Peptidase_M8: Leishmanolysin This Prosite motif co	84.22
cd06459	427	M3B_Oligoendopeptidase_F Peptidase family M3B Olig	82.47
KOG4525|consensus	614		81.89
TIGR00181	591	pepF oligoendopeptidase F. This family represents	81.84
PF12725	318	DUF3810: Protein of unknown function (DUF3810); In	80.96
PF05547	645	Peptidase_M6: Immune inhibitor A peptidase M6; Int	80.07

>cd04282 ZnMc_meprin Zinc-dependent metalloprotease, meprin_like subfamily

Probab=100.00  E-value=1.6e-64  Score=463.73  Aligned_cols=206  Identities=36%  Similarity=0.658  Sum_probs=194.6

Q ss_pred             CCCccC-CccccccccccccCCCCcCCCeeEEEEcCCCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEEecCCCC
Q psy2949           1 MEGDIL-IPRERDSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFG   79 (367)
Q Consensus         1 ~~GDi~-~~~q~~~r~a~~~~~~~Wp~~~VpY~~~~~~~~~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i~~~~~g   79 (367)
                      |||||+ +++  ++|+|+.....+||+ +|||.| +.+|+..+++.|++||++|++.|||||+|++++.+||.|.. +.|
T Consensus        24 ~eGDI~l~~~--~~R~a~~~~~~~Wp~-~VPY~i-~~~~~~~~~~~I~~Am~~~~~~TCirF~~rt~e~~yi~i~~-~~G   98 (230)
T cd04282          24 FEGDILLDEG--QSRNGLIGDTYRWPF-PIPYIL-DDSLDLNAKGVILKAFEMYRLKSCVDFKPYEGESNYIFFFK-GSG   98 (230)
T ss_pred             ccccccCCcc--cccccccCcccCCCc-ceeEEE-CCCCCHHHHHHHHHHHHHHHhCCCeeEEECCCCCcEEEEEc-CCC
Confidence            799999 775  468999999999999 999999 88899999999999999999999999999999999999974 689


Q ss_pred             ccCCCCCCCCCcccccccCCCcccccchhHHHHHhhhcccccccCCCCCcceEEeeCCcCCCCCcccccCCCCcccccCC
Q psy2949          80 CASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGM  159 (367)
Q Consensus        80 c~S~vG~~~g~q~i~~~~l~~~c~~~g~i~HEigHALG~~HEh~rpDRD~yv~I~~~ni~~~~~~nf~k~~~~~~~~~g~  159 (367)
                      |||+||+.+|.|.|+   |+.+|...|+|+|||||||||+|||+|||||+||+|+|+||.++..+||.|++...+.++|+
T Consensus        99 C~S~vG~~gg~q~is---l~~~C~~~Gti~HEl~HalGf~HEqsRpDRD~yV~I~~~nI~~~~~~nF~k~~~~~~~~~g~  175 (230)
T cd04282          99 CWSMVGDQQGGQNLS---IGAGCDYKATVEHEFLHALGFYHEQSRSDRDDYVKIWWDQILSGREHNFNKYDDSFSTDLNT  175 (230)
T ss_pred             eeeccCccCCeEEEE---ECCCcCCCchHHHHHHHHhCCcccccccccccceEEeecccCchHHHHhhhcCccccccCCC
Confidence            999999999999998   78899999999999999999999999999999999999999999999999999888888999


Q ss_pred             cCCCCCCcCcccceeccCCCcceeeeCCCCCCCccCccccccHHHHHHHHHHhcC
Q psy2949         160 PYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKC  214 (367)
Q Consensus       160 ~YD~~SIMhY~~~~fs~~~~~~ti~~~~~~~~~~IG~r~~lS~~D~~~in~lY~C  214 (367)
                      ||||+|||||++.+||+++..+||+|+++.+...|||+.+||..|+.+||+||+|
T Consensus       176 pYDy~SIMHY~~~aFs~~~~~pTi~~~~~~~~~~iGqr~~lS~~Di~~iN~~Y~C  230 (230)
T cd04282         176 PYDYESVMHYSPFSFNKGASEPTITTKIPEFNDIIGQRLDFSDIDLERLNRMYNC  230 (230)
T ss_pred             CCCcccccccCCCccccCCCCceeeecCCcccccccccCCCCHHHHHHHHHhcCC
Confidence            9999999999999999994459999999877788999999999999999999998

Meprins are membrane-bound or secreted extracellular proteases, which cleave a variety of targets, including peptides such as parathyroid hormone, gastrin, and cholecystokinin, cytokines such as osteopontin, and proteins such as collagen IV, fibronectin, casein and gelatin. Meprins may also be able to release proteins from the cell surface. Closely related meprin alpha- and beta-subunits form homo- and hetero-oligomers; these complexes are found on epithelial cells of the intestine, for example, and are also expressed in certain cancer cells.

>cd04281 ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1/TLD-like subfamily

Probab=100.00  E-value=5.4e-62  Score=439.83  Aligned_cols=196  Identities=38%  Similarity=0.702  Sum_probs=183.5

Q ss_pred             ccccCCCCcCCCeeEEEEcCCCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEEecCCCCccCCCCCCC-CCcccc
Q psy2949          16 LVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCASPVGYFP-IGTGID   94 (367)
Q Consensus        16 a~~~~~~~Wp~~~VpY~~~~~~~~~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i~~~~~gc~S~vG~~~-g~q~i~   94 (367)
                      |.....++||+++|||.| +.+|+..+++.|++||++|++.|||||+|++++.+||.|...+.||||+||+.+ |.|.|+
T Consensus         2 ~~~~~~~~Wp~~~VpY~i-~~~~~~~~~~~I~~Am~~~~~~TCirF~~r~~~~~yi~f~~~~~GC~S~vG~~~~g~q~is   80 (200)
T cd04281           2 ATARKERIWPGGVIPYVI-DGNFTGSQRAMFKQAMRHWENFTCVTFVERTPEENYIVFTYRPCGCCSYVGRRGNGPQAIS   80 (200)
T ss_pred             CccCccCcCCCCEEEEEE-CCCCCHHHHHHHHHHHHHHHhCCceEEEECCCCCCEEEEEECCCCeeEcCCCcCCCceeee
Confidence            556678999999999999 888999999999999999999999999999999999999866689999999987 789887


Q ss_pred             cccCCCcccccchhHHHHHhhhcccccccCCCCCcceEEeeCCcCCCCCcccccCCCCcccccCCcCCCCCCcCccccee
Q psy2949          95 IFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAF  174 (367)
Q Consensus        95 ~~~l~~~c~~~g~i~HEigHALG~~HEh~rpDRD~yv~I~~~ni~~~~~~nf~k~~~~~~~~~g~~YD~~SIMhY~~~~f  174 (367)
                         |+.+|...|+|+|||||||||+|||+|||||+||.|+|+||.++..+||.|++...+..+|+||||+|||||++.+|
T Consensus        81 ---l~~~C~~~Gti~HEl~HaLGf~HEhsRpDRD~yV~I~~~nI~~~~~~nF~k~~~~~~~~~g~pYDy~SiMHY~~~aF  157 (200)
T cd04281          81 ---IGKNCDKFGIVVHELGHVIGFWHEHTRPDRDDHVTIIRENIQPGQEYNFLKMEPEEVDSLGEPYDFDSIMHYARNTF  157 (200)
T ss_pred             ---cCCCcCcCchHHHHHHHHhcCcchhccccccceEEEeecccCcchhhhhhhcCccccccCCCccCCCccccCCCCcc
Confidence               78999999999999999999999999999999999999999999999999999888888999999999999999999


Q ss_pred             ccCCCcceeeeCCCC--CCCccCccccccHHHHHHHHHHhcCC
Q psy2949         175 SKDGVSKTIVPLYPG--AEDTMGQRDAMSRVDLAKLNRLYKCP  215 (367)
Q Consensus       175 s~~~~~~ti~~~~~~--~~~~IG~r~~lS~~D~~~in~lY~C~  215 (367)
                      ++++..+||+|+++.  +...|||+.+||+.|+.+||+||+|+
T Consensus       158 s~~~~~~Ti~p~~~~~~~~~~iGqr~~lS~~Di~~iN~~Y~C~  200 (200)
T cd04281         158 SRGMFLDTILPKRDPNGVRPEIGQRTRLSEGDIIQANKLYKCP  200 (200)
T ss_pred             ccCCCCCceEECCCcccccccccccCCCCHHHHHHHHHhcCCC
Confidence            999877999998774  45779999999999999999999995

BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning.

>cd04283 ZnMc_hatching_enzyme Zinc-dependent metalloprotease, hatching enzyme-like subfamily

Probab=100.00  E-value=3.9e-56  Score=395.81  Aligned_cols=177  Identities=42%  Similarity=0.773  Sum_probs=165.3

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEEecCCCCccCCCCCCCCCcccccccCC-Ccccccc
Q psy2949          28 TVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCASPVGYFPIGTGIDIFLGG-RVCFLKG  106 (367)
Q Consensus        28 ~VpY~~~~~~~~~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i~~~~~gc~S~vG~~~g~q~i~~~~l~-~~c~~~g  106 (367)
                      +|||.| +.+|++.+++.|++||++|++.|||||++++++.+||.|.. +.||||+||+.++.|.|+   ++ .+|...|
T Consensus         5 ~IpY~i-~~~~~~~~~~~I~~A~~~~~~~TCirF~~~~~~~~yi~~~~-~~gC~S~vG~~gg~q~i~---l~~~~C~~~G   79 (182)
T cd04283           5 YVPYVI-SPQYSENERAVIEKAMQEFETLTCVRFVPRTTERDYLNIES-RSGCWSYIGRQGGRQTVS---LQKQGCMYKG   79 (182)
T ss_pred             EEEEEE-CCCCCHHHHHHHHHHHHHHHhCCceeeEECCCCCcEEEEEc-CCCceEecCccCCceeEe---cCCCCcCccc
Confidence            799999 88899999999999999999999999999998899999974 689999999999999998   55 6899999


Q ss_pred             hhHHHHHhhhcccccccCCCCCcceEEeeCCcCCCCCcccccCCCCcccccCCcCCCCCCcCcccceeccCCCcceeeeC
Q psy2949         107 KIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPL  186 (367)
Q Consensus       107 ~i~HEigHALG~~HEh~rpDRD~yv~I~~~ni~~~~~~nf~k~~~~~~~~~g~~YD~~SIMhY~~~~fs~~~~~~ti~~~  186 (367)
                      +|+|||||||||+|||+|||||+||.|+|+||.++..+||.|++.   .++++||||+|||||++.+||+++. +||+|+
T Consensus        80 ~i~HEl~HaLG~~HEhsRpDRD~yV~I~~~nI~~~~~~nF~~~~~---~~~~~pYDy~SiMHY~~~afs~~g~-~Ti~~~  155 (182)
T cd04283          80 IIQHELLHALGFYHEQTRSDRDKYVRINWENIIPDQLYNFDKQDT---NNLGTPYDYSSVMHYGRYAFSINGK-PTIVPI  155 (182)
T ss_pred             hHHHHHHHHhCCcccccccccCceEEEehhhcCchHHhhhhhccc---cccCCcccceeeeccCCcccccCCC-CeEEEC
Confidence            999999999999999999999999999999999999999999864   3578999999999999999999887 999999


Q ss_pred             CCCCCCccCccccccHHHHHHHHHHhcC
Q psy2949         187 YPGAEDTMGQRDAMSRVDLAKLNRLYKC  214 (367)
Q Consensus       187 ~~~~~~~IG~r~~lS~~D~~~in~lY~C  214 (367)
                      ++.. ..||||.+||+.|+.+||+||.|
T Consensus       156 ~~~~-~~iGqr~~lS~~Di~~iN~~Y~C  182 (182)
T cd04283         156 PDPN-VPIGQRQGMSNLDILRINKLYNC  182 (182)
T ss_pred             Cccc-ccccCCCCCCHHHHHHHHHhcCC
Confidence            7643 57999999999999999999988

Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.

>PF01400 Astacin: Astacin (Peptidase family M12A) This Prosite motif covers only the active site

Probab=100.00  E-value=1.8e-56  Score=403.66  Aligned_cols=189  Identities=44%  Similarity=0.855  Sum_probs=151.0

Q ss_pred             CCcCCCeeEEEEcCCCCCHHHHHHHHHHHHHHHHcCCcEEEEcC-CCCceEEEecCCCCccCCCCCCCCCcccccccCCC
Q psy2949          22 QLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRT-NQDTYLRFRNTGFGCASPVGYFPIGTGIDIFLGGR  100 (367)
Q Consensus        22 ~~Wp~~~VpY~~~~~~~~~~~~~~I~~A~~~w~~~tci~F~~~~-~~~~~I~i~~~~~gc~S~vG~~~g~q~i~~~~l~~  100 (367)
                      ++||+++|||.| ++++++.+++.|++||++|++.|||+|++++ ...++|.|. .+.||||+||+.++.|.|+   |+.
T Consensus         1 ~~Wp~~~IpY~~-~~~~~~~~~~~I~~Am~~~e~~TcI~F~~~~~~~~~~i~~~-~~~gC~S~vG~~~g~q~i~---l~~   75 (191)
T PF01400_consen    1 KKWPNGTIPYYI-DPSFSSSQRQRIRKAMDEWEKNTCIRFVERTENEDDYISFS-NGSGCWSYVGRQGGEQTIN---LGD   75 (191)
T ss_dssp             -S-GGGEEEEEE-ETTS-HHHHHHHHHHHHHHHHHSSEEEEE-SSSSSSEEEEE-SSSSEEEESS--SSEEEEE---E-T
T ss_pred             CcCCCCEEEEEE-CCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCceEEEee-cCccccchhhhcCcceeEE---ecc
Confidence            589999999999 7889999999999999999999999999999 888899886 5699999999999999998   788


Q ss_pred             cccccchhHHHHHhhhcccccccCCCCCcceEEeeCCcCCCCCcccccCCCCcccccCCcCCCCCCcCcccceeccCCCc
Q psy2949         101 VCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVS  180 (367)
Q Consensus       101 ~c~~~g~i~HEigHALG~~HEh~rpDRD~yv~I~~~ni~~~~~~nf~k~~~~~~~~~g~~YD~~SIMhY~~~~fs~~~~~  180 (367)
                      +|...|+|+|||||||||.|||+|||||+||.|+|+||.++...||.+.+...+..+++|||++|||||++.+|++++..
T Consensus        76 ~c~~~~~i~HEl~HaLG~~HEh~RpDRd~yi~i~~~~i~~~~~~~f~~~~~~~~~~~~~pYD~~SIMHY~~~~~s~~~~~  155 (191)
T PF01400_consen   76 GCFSVGTILHELGHALGFWHEHQRPDRDNYITINWDNIQPGYKHNFDKYPPSEWSTYGSPYDYGSIMHYSSYAFSKNGSQ  155 (191)
T ss_dssp             TC-SHHHHHHHHHHHHTB--GGGSTTGGGTEEE-GGGB-TTSGGGG---SGGGBE-TTS---TT-TT---TTTTBSSTTS
T ss_pred             eeCCccchHHHHHHHHhhhhhhhccccccEEEEehhcchhhhhhhhhccccccccccCCCcCccCeecccCcccccCCCC
Confidence            99999999999999999999999999999999999999999999999998888888999999999999999999999977


Q ss_pred             ceeeeCCCCCCCccCccccccHHHHHHHHHHhcCC
Q psy2949         181 KTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKCP  215 (367)
Q Consensus       181 ~ti~~~~~~~~~~IG~r~~lS~~D~~~in~lY~C~  215 (367)
                      +||+|++..+...||++.+||+.|+++||.+|+|+
T Consensus       156 ~ti~~~~~~~~~~iG~~~~lS~~D~~~in~~Y~C~  190 (191)
T PF01400_consen  156 PTITPKDPKYQETIGQRNRLSFTDIKQINKMYNCP  190 (191)
T ss_dssp             -SEEESSTTCTS-GGG-SS--HHHHHHHHHHTT--
T ss_pred             CeEEecCCCCcccccccCCCCHHHHHHHHHhcCCC
Confidence            99999998777899999999999999999999996

; InterPro: IPR001506 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12A (astacin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The astacin () family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ....

>KOG3714|consensus

Probab=100.00  E-value=2.6e-55  Score=437.59  Aligned_cols=202  Identities=45%  Similarity=0.813  Sum_probs=188.5

Q ss_pred             cccccccccCCCCcCCCeeEEEEcCCCCCHHHHHHHHHHHHHHHHcCCcEEEEcC-CCCceEEEecCCCCccCCCCCCCC
Q psy2949          11 RDSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRT-NQDTYLRFRNTGFGCASPVGYFPI   89 (367)
Q Consensus        11 ~~~r~a~~~~~~~Wp~~~VpY~~~~~~~~~~~~~~I~~A~~~w~~~tci~F~~~~-~~~~~I~i~~~~~gc~S~vG~~~g   89 (367)
                      +..|+++.+..++||+++|||.| +++|+..+|+.|+.||++|+++|||+|+|++ ...+++.|.... ||||+||+.++
T Consensus        69 ~~~r~~~~~~~~~Wp~~~ipY~i-~~~~~~~~r~~i~~A~~~~~~~TCi~F~~~~~~~~~~~~~~~~~-gC~S~VGr~gg  146 (411)
T KOG3714|consen   69 RSRRNGTSNPERRWPNGVIPYYI-DGSFTSSQRALIRQAMREIENHTCIRFVERTTPDKDYLIVFTGG-GCYSYVGRRGG  146 (411)
T ss_pred             hhhhhcccChhhcCCCCeeeeEE-CCCCCHHHHHHHHHHHHHHhhCcceEEEeCCCCCcceEEEeCCC-cceeeeCccCC
Confidence            46788888999999999999999 7779999999999999999999999999998 567888886554 99999999998


Q ss_pred             C-cccccccCCCcccccchhHHHHHhhhcccccccCCCCCcceEEeeCCcCCCCCcccccCCCCcccccCCcCCCCCCcC
Q psy2949          90 G-TGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMH  168 (367)
Q Consensus        90 ~-q~i~~~~l~~~c~~~g~i~HEigHALG~~HEh~rpDRD~yv~I~~~ni~~~~~~nf~k~~~~~~~~~g~~YD~~SIMh  168 (367)
                      . |.++   ++.+|...|+|+|||||||||+|||+|||||+||+|+|+||.++..+||.|++......+++||||+||||
T Consensus       147 ~~q~~s---l~~~C~~~G~i~HEl~HaLGf~HehsR~DRD~yV~I~~~ni~~~~~~nF~k~~~~~~~~~~~pYDygSvMH  223 (411)
T KOG3714|consen  147 GQQLLS---LGDGCDRFGTIVHELMHALGFWHEHSRPDRDNYVSINWDNIDPGQEYNFEKYSPDEVTTYGVPYDYGSVMH  223 (411)
T ss_pred             Ccccee---cCCCcCcCchhHHHHHHHhhhhhccCcccccCceEEeeccCChhhhhhhhhcChhhhhccCCcccCCcccc
Confidence            6 7666   89999999999999999999999999999999999999999999999999999988999999999999999


Q ss_pred             cccceeccCCCcceeeeCCCCCCCccCccccccHHHHHHHHHHhcCCCC
Q psy2949         169 YSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKCPKN  217 (367)
Q Consensus       169 Y~~~~fs~~~~~~ti~~~~~~~~~~IG~r~~lS~~D~~~in~lY~C~~n  217 (367)
                      |++.+|++++..+||+|++...+.+||||..+|+.|+.+||+||.|+..
T Consensus       224 Y~~~afs~~~~~~ti~~~~~~~~~~mGqr~~~S~~Di~~iN~~Y~C~~~  272 (411)
T KOG3714|consen  224 YAPYAFSKNGSLPTIVPKDNGFQNTMGQRERLSFYDIRKINKLYCCPEC  272 (411)
T ss_pred             cCCcccCcCCCCCceecccccccccccccCcCCHHHHHHHHhhcCCCcc
Confidence            9999999999988999999987778999999999999999999999643

>cd04280 ZnMc_astacin_like Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site

Probab=100.00  E-value=3.6e-54  Score=385.26  Aligned_cols=180  Identities=44%  Similarity=0.815  Sum_probs=170.0

Q ss_pred             CCeeEEEEcCCCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEEecCCCCccCCCCCCCCCcccccccCCCccccc
Q psy2949          26 DKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLK  105 (367)
Q Consensus        26 ~~~VpY~~~~~~~~~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i~~~~~gc~S~vG~~~g~q~i~~~~l~~~c~~~  105 (367)
                      +++|||.| +.++++.+++.|++||++|++.|||+|+|++.+.++|.|... .||||.||+.++.|.|+   |+.+|...
T Consensus         1 ~~~VpY~i-~~~~~~~~~~~I~~A~~~w~~~TcIrF~~~~~~~~~I~f~~~-~Gc~S~vG~~~~~q~i~---l~~~c~~~   75 (180)
T cd04280           1 NGTVPYVI-DGSFDESDRSLILRAMREIESNTCIRFVPRTTEKDYIRIVKG-SGCWSYVGRVGGRQVVS---LGSGCFSL   75 (180)
T ss_pred             CCEEEEEE-CCCCCHHHHHHHHHHHHHHHhCCcceEEECCCCCcEEEEEcC-CCcceecCccCCceeEE---eCCCcCcC
Confidence            57999999 777999999999999999999999999999988999999765 89999999999999998   78899999


Q ss_pred             chhHHHHHhhhcccccccCCCCCcceEEeeCCcCCCCCcccccCCCCcccccCCcCCCCCCcCcccceeccCCCcceeee
Q psy2949         106 GKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVP  185 (367)
Q Consensus       106 g~i~HEigHALG~~HEh~rpDRD~yv~I~~~ni~~~~~~nf~k~~~~~~~~~g~~YD~~SIMhY~~~~fs~~~~~~ti~~  185 (367)
                      |+|+|||||||||+|||+|||||+||.|+|+||.++...||.|++...+..+++||||+|||||++.+|++++. +||+|
T Consensus        76 g~v~HE~~HalG~~HEh~R~DRD~yv~i~~~ni~~~~~~nf~~~~~~~~~~~~~~YDy~SiMhY~~~~fs~~~~-~ti~~  154 (180)
T cd04280          76 GTIVHELMHALGFYHEQSRPDRDDYVTINWENIQPGYEHNFDKYSPDTVTTYGVPYDYGSVMHYGPTAFSKNGK-PTIVP  154 (180)
T ss_pred             chhHHHHHHHhcCcchhcccccCCeEEEeecccChhHHHHhhhcCcccccccCCcCCcceEeccCCcccccCCC-ceEEE
Confidence            99999999999999999999999999999999999999999999988888889999999999999999999977 99999


Q ss_pred             CCCCCCCccCccccccHHHHHHHHHHh
Q psy2949         186 LYPGAEDTMGQRDAMSRVDLAKLNRLY  212 (367)
Q Consensus       186 ~~~~~~~~IG~r~~lS~~D~~~in~lY  212 (367)
                      +++.+.. +|++.+||+.|+++||+||
T Consensus       155 ~~~~~~~-~g~~~~~S~~D~~~in~~Y  180 (180)
T cd04280         155 KDPGYQI-IGQREGLSFLDIKKINKMY  180 (180)
T ss_pred             CCchhhc-ccCCCCCCHHHHHHHHHhC
Confidence            9987544 8999999999999999998

Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development.

>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3

Probab=100.00  E-value=9.2e-41  Score=303.23  Aligned_cols=168  Identities=26%  Similarity=0.292  Sum_probs=132.9

Q ss_pred             CCcCCCeeE-EEEcCCCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEEe-cCCCCccCCCCCCC-----CCcccc
Q psy2949          22 QLWPDKTVY-YNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFR-NTGFGCASPVGYFP-----IGTGID   94 (367)
Q Consensus        22 ~~Wp~~~Vp-Y~~~~~~~~~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i~-~~~~gc~S~vG~~~-----g~q~i~   94 (367)
                      ++||+++|+ |.| ..++++.+|+.|++||++|++.|||+|++++.....|+|. ..+.||||+||+.+     +.+.|+
T Consensus         1 ~~W~~~~~~~~~f-~~~~~~~~r~~I~~A~~~W~~~t~i~F~~~~~~~adi~I~f~~~~Gc~S~vG~~~~~~~~~~~t~~   79 (198)
T cd04327           1 KLWRNGTVLRIAF-LGGPDAFLKDKVRAAAREWLPYANLKFKFVTDADADIRISFTPGDGYWSYVGTDALLIGADAPTMN   79 (198)
T ss_pred             CCCCCCCeEEEEe-CCCCcHHHHHHHHHHHHHHhhhcCeEEEECCCCCCCEEEEEecCCCCCCCcCCcccccCCCCceee
Confidence            589999655 777 6667899999999999999999999999998434444443 34589999999953     345565


Q ss_pred             cccCCC------cccccchhHHHHHhhhcccccccCCCCCcceEEeeCC--cCC-----------CCC--cccccCCCCc
Q psy2949          95 IFLGGR------VCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLREN--IGP-----------GHE--FNLERRPTGS  153 (367)
Q Consensus        95 ~~~l~~------~c~~~g~i~HEigHALG~~HEh~rpDRD~yv~I~~~n--i~~-----------~~~--~nf~k~~~~~  153 (367)
                         ++.      +|...++|+|||||||||.|||+|||||    |.|++  |.+           +..  .+|.|+..  
T Consensus        80 ---l~~~~~~~~~~~~~~~i~HElgHaLG~~HEh~rpdrd----i~w~~~~i~~~~~~~~~~~~~~~~~~~~f~~~~~--  150 (198)
T cd04327          80 ---LGWFTDDTPDPEFSRVVLHEFGHALGFIHEHQSPAAN----IPWDKEAVYAYFSGPPNWDRETVINHNVFAKLDD--  150 (198)
T ss_pred             ---eeeecCCCchhhHHHHHHHHHHHHhcCcccccCCCCC----CCcCHHHHHHHHhcCCCCcHHHHHHhhhhhcccc--
Confidence               333      4556699999999999999999999999    67773  321           112  56888764  


Q ss_pred             ccccCCcCCCCCCcCcc-cceeccCCCcceeeeCCCCCCCccCccccccHHHHHHHHHHh
Q psy2949         154 VRTFGMPYDYGSIMHYS-GIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLY  212 (367)
Q Consensus       154 ~~~~g~~YD~~SIMhY~-~~~fs~~~~~~ti~~~~~~~~~~IG~r~~lS~~D~~~in~lY  212 (367)
                      ...+++||||+|||||+ +.+|++++. +|            |++.+||..|+++|+.||
T Consensus       151 ~~~~~~~yD~~SIMHY~~~~~~t~~g~-~t------------~~~~~lS~~D~~~i~~~Y  197 (198)
T cd04327         151 GDVAYSPYDPDSIMHYPFPGSLTLDGE-EV------------PPNRTLSDKDKAFMRLLY  197 (198)
T ss_pred             ccccCCCCCcHHHHcCCCcHHhhcCCc-cc------------CCCCCCCHHHHHHHHHhC
Confidence            33578999999999999 789998877 33            677889999999999999

A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.

>smart00235 ZnMc Zinc-dependent metalloprotease

Probab=99.96  E-value=5.8e-30  Score=219.67  Aligned_cols=135  Identities=34%  Similarity=0.610  Sum_probs=115.9

Q ss_pred             CCCcCCCeeEEEEcCCCCCHHH-HHHHHHHHHHHHHcCCcEEEEcC-CCCceEEEecCCC-Ccc-CCCCCCCCCcccccc
Q psy2949          21 AQLWPDKTVYYNFEDSEFTIYE-KTLVENAIQDLRMHTCVRFVPRT-NQDTYLRFRNTGF-GCA-SPVGYFPIGTGIDIF   96 (367)
Q Consensus        21 ~~~Wp~~~VpY~~~~~~~~~~~-~~~I~~A~~~w~~~tci~F~~~~-~~~~~I~i~~~~~-gc~-S~vG~~~g~q~i~~~   96 (367)
                      .++||+++|+|+|+...+++.+ ++.|++||+.|++.+||+|++++ +...+|.|..... ||+ |++|+.++.+.++  
T Consensus         2 ~~~W~~~~v~Y~i~~~~~~~~~~~~~i~~A~~~w~~~t~i~F~e~~~~ad~~I~f~~~~~~g~~~a~~g~~~g~~~~~--   79 (140)
T smart00235        2 SKKWPKGTVPYVIDSSSLSPEEVREAIARAFAEWSDVTCLRFVERTSTADIYISFGKGDGSGCTLSHAGRPGGDQHFS--   79 (140)
T ss_pred             CCcCCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHhcCCeeEEEECCCCCCeEEEEEECCCCCcceeeeecCCCceEEE--
Confidence            4789999999999326778887 99999999999999999999987 5677888876543 998 9999988888887  


Q ss_pred             cCCCcccccchhHHHHHhhhcccccccCCCCCcceEEeeCCcCCCCCcccccCCCCcccccCCcCCCCC
Q psy2949          97 LGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGS  165 (367)
Q Consensus        97 ~l~~~c~~~g~i~HEigHALG~~HEh~rpDRD~yv~I~~~ni~~~~~~nf~k~~~~~~~~~g~~YD~~S  165 (367)
                       ++.+|...++++|||||||||.|||+|||||+|+.|+|+++    ..+|.+..   .+.++.+|||+|
T Consensus        80 -~~~~~~~~~~~~HEigHaLGl~H~~~~~drd~~~~~~~~~~----~~~~~~~~---~~~~~~~~~yg~  140 (140)
T smart00235       80 -LGNGCINTGVAAHELGHALGLYHEQSRSDRDNYMYINYTNI----TRNFDLSN---DDSLGIPYDYGS  140 (140)
T ss_pred             -ccCCcCCcccHHHHHHHHhcCCcCCCCCcccCeEEEehhhh----hhcccccc---ccCCCchhccCc
Confidence             57789999999999999999999999999999999999998    35666543   245778999986

Neutral zinc metallopeptidases. This alignment represents a subset of known subfamilies. Highest similarity occurs in the HExxH zinc-binding site/ active site.

>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily

Probab=99.96  E-value=5.8e-29  Score=218.70  Aligned_cols=145  Identities=25%  Similarity=0.322  Sum_probs=119.6

Q ss_pred             CeeEEEEcCCCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCC-CceEEEecC-----CCCccCCCCCC--CCCcccccccC
Q psy2949          27 KTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQ-DTYLRFRNT-----GFGCASPVGYF--PIGTGIDIFLG   98 (367)
Q Consensus        27 ~~VpY~~~~~~~~~~~~~~I~~A~~~w~~~tci~F~~~~~~-~~~I~i~~~-----~~gc~S~vG~~--~g~q~i~~~~l   98 (367)
                      .+|+|.| +..++...|+.|++||+.|++.+||+|++++.. ...|+|...     +.||+|++|+.  ++.+.|.   +
T Consensus         2 ~~I~y~i-~~~~~~~~r~~i~~A~~~W~~~~~i~F~e~~~~~~~di~i~~~~~~~~~~~~~~~~~~~~~~~~g~i~---~   77 (165)
T cd04268           2 KPITYYI-DDSVPDKLRAAILDAIEAWNKAFAIGFKNANDVDPADIRYSVIRWIPYNDGTWSYGPSQVDPLTGEIL---L   77 (165)
T ss_pred             CCEEEEE-cCCCCHHHHHHHHHHHHHHHHHhCcCceeccccCccCceEEEEEeecCCCCccccCCccCCCCCccEE---e
Confidence            4799999 778899999999999999999999999999853 566666432     58999999985  4455555   3


Q ss_pred             CCccc-----------ccchhHHHHHhhhcccccccCCCCCcceEEeeCCcCCCCCcccccCCCCcccccCCcCCCCCCc
Q psy2949          99 GRVCF-----------LKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIM  167 (367)
Q Consensus        99 ~~~c~-----------~~g~i~HEigHALG~~HEh~rpDRD~yv~I~~~ni~~~~~~nf~k~~~~~~~~~g~~YD~~SIM  167 (367)
                      +..|.           ..++++|||||||||.|||+|||||.++                       ..++.+||+.|||
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~HEiGHaLGL~H~~~~~~~~~~~-----------------------~~~~~~~~~~SvM  134 (165)
T cd04268          78 ARVYLYSSFVEYSGARLRNTAEHELGHALGLRHNFAASDRDDNV-----------------------DLLAEKGDTSSVM  134 (165)
T ss_pred             eEEEEchhHHHHHHHHHHHHHHHHHHHHhcccccCcCCccCCcc-----------------------hhhccCCCCcccC
Confidence            44443           4599999999999999999999999876                       3467899999999


Q ss_pred             CcccceeccCCCcceeeeCCCCCCCccCccccccHHHHHHHHHHh
Q psy2949         168 HYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLY  212 (367)
Q Consensus       168 hY~~~~fs~~~~~~ti~~~~~~~~~~IG~r~~lS~~D~~~in~lY  212 (367)
                      ||....|+.+              ..+|++..++..|+..|+.||
T Consensus       135 ~y~~~~~~~~--------------~~~~~~~~~~~~Di~ai~~lY  165 (165)
T cd04268         135 DYAPSNFSIQ--------------LGDGQKYTIGPYDIAAIKKLY  165 (165)
T ss_pred             CCCccccccc--------------cccccCCCCCHHHHHHHHhcC
Confidence            9999887655              125778889999999999998

This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.

>KOG3714|consensus

Probab=99.88  E-value=1.4e-23  Score=209.66  Aligned_cols=120  Identities=38%  Similarity=0.560  Sum_probs=105.1

Q ss_pred             CCccCccccccHHHHHHHHHHhcCCCCcccCcccccccCCCCcccccccCCCCCCcccccccccccCCCceeeeeCCCCC
Q psy2949         191 EDTMGQRDAMSRVDLAKLNRLYKCPKNYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGA  270 (367)
Q Consensus       191 ~~~IG~r~~lS~~D~~~in~lY~C~~nI~~g~~~Nf~~~~~~~~~~~~~pYDy~SiMhY~~~~fs~~~~~~ti~~~~~~~  270 (367)
                      .|++|..|+.|+.|++....+-  .+||.++...||++++...++++++||||+|||||++++||+++..+||+|+++..
T Consensus       168 ~HaLGf~HehsR~DRD~yV~I~--~~ni~~~~~~nF~k~~~~~~~~~~~pYDygSvMHY~~~afs~~~~~~ti~~~~~~~  245 (411)
T KOG3714|consen  168 MHALGFWHEHSRPDRDNYVSIN--WDNIDPGQEYNFEKYSPDEVTTYGVPYDYGSVMHYAPYAFSKNGSLPTIVPKDNGF  245 (411)
T ss_pred             HHHhhhhhccCcccccCceEEe--eccCChhhhhhhhhcChhhhhccCCcccCCcccccCCcccCcCCCCCceecccccc
Confidence            4889999999999999855544  48999999999999999999999999999999999999999999999999999888


Q ss_pred             ccccccccCCCHHHHHHHhhhccCCCCcccCccccccccCCCC
Q psy2949         271 EDTMGQRDAMSRVDLAKLNRLYKCPKNYYQGFDIQGFYSTSGP  313 (367)
Q Consensus       271 ~~~~gqr~~~s~~D~~~in~~Y~C~~~~~~~~~~~g~~~~~~~  313 (367)
                      +.+||||.++|+.|+.+||+||+|+.++...+ .+|..+++++
T Consensus       246 ~~~mGqr~~~S~~Di~~iN~~Y~C~~~~~~~~-~~~g~~~~~~  287 (411)
T KOG3714|consen  246 QNTMGQRERLSFYDIRKINKLYCCPECCELLC-NNGGTNPSNC  287 (411)
T ss_pred             cccccccCcCCHHHHHHHHhhcCCCccCcccc-cCCCCCCccc
Confidence            77899999999999999999999999887444 3434444333

>cd04281 ZnMc_BMP1_TLD Zinc-dependent metalloprotease; BMP1/TLD-like subfamily

Probab=99.88  E-value=1.3e-23  Score=190.02  Aligned_cols=102  Identities=31%  Similarity=0.540  Sum_probs=92.5

Q ss_pred             CccCccccccHHHHHHHHHHhcCCCCcccCcccccccCCCCcccccccCCCCCCcccccccccccCCCceeeeeCCCC--
Q psy2949         192 DTMGQRDAMSRVDLAKLNRLYKCPKNYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPG--  269 (367)
Q Consensus       192 ~~IG~r~~lS~~D~~~in~lY~C~~nI~~g~~~Nf~~~~~~~~~~~~~pYDy~SiMhY~~~~fs~~~~~~ti~~~~~~--  269 (367)
                      |++|..|+.|+.|++....+-  .+||.++...||.+.+...++++++||||+|||||++.+||+++..+||+|+.+.  
T Consensus        97 HaLGf~HEhsRpDRD~yV~I~--~~nI~~~~~~nF~k~~~~~~~~~g~pYDy~SiMHY~~~aFs~~~~~~Ti~p~~~~~~  174 (200)
T cd04281          97 HVIGFWHEHTRPDRDDHVTII--RENIQPGQEYNFLKMEPEEVDSLGEPYDFDSIMHYARNTFSRGMFLDTILPKRDPNG  174 (200)
T ss_pred             HHhcCcchhccccccceEEEe--ecccCcchhhhhhhcCccccccCCCccCCCccccCCCCccccCCCCCceEECCCccc
Confidence            789999999999999855543  5789999999999999888899999999999999999999999878999998763  


Q ss_pred             CccccccccCCCHHHHHHHhhhccCC
Q psy2949         270 AEDTMGQRDAMSRVDLAKLNRLYKCP  295 (367)
Q Consensus       270 ~~~~~gqr~~~s~~D~~~in~~Y~C~  295 (367)
                      +..+||||.+||+.|+++||+||+||
T Consensus       175 ~~~~iGqr~~lS~~Di~~iN~~Y~C~  200 (200)
T cd04281         175 VRPEIGQRTRLSEGDIIQANKLYKCP  200 (200)
T ss_pred             ccccccccCCCCHHHHHHHHHhcCCC
Confidence            45689999999999999999999997

BMP1 (Bone morphogenetic protein 1) and TLD (tolloid)-like metalloproteases play vital roles in extracellular matrix formation, by cleaving precursor proteins such as enzymes, structural proteins, and proteins involved in the mineralization of the extracellular matrix. The drosophila protein tolloid and its Xenopus homologue xolloid cleave and inactivate Sog and chordin, respectively, which are inhibitors of Dpp (the Drosophila decapentaplegic gene product) and its homologue BMP4, involved in dorso-ventral patterning.

>cd04282 ZnMc_meprin Zinc-dependent metalloprotease, meprin_like subfamily

Probab=99.87  E-value=2.6e-23  Score=191.26  Aligned_cols=101  Identities=33%  Similarity=0.580  Sum_probs=93.7

Q ss_pred             CccCccccccHHHHHHHHHHhcCCCCcccCcccccccCCCCcccccccCCCCCCcccccccccccCCCceeeeeCCCCCc
Q psy2949         192 DTMGQRDAMSRVDLAKLNRLYKCPKNYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAE  271 (367)
Q Consensus       192 ~~IG~r~~lS~~D~~~in~lY~C~~nI~~g~~~Nf~~~~~~~~~~~~~pYDy~SiMhY~~~~fs~~~~~~ti~~~~~~~~  271 (367)
                      |++|..|+.|+.|++....+.  .+||.++...||+|++...++++++||||+|||||++++||+++..+||+|+.+.+.
T Consensus       130 HalGf~HEqsRpDRD~yV~I~--~~nI~~~~~~nF~k~~~~~~~~~g~pYDy~SIMHY~~~aFs~~~~~pTi~~~~~~~~  207 (230)
T cd04282         130 HALGFYHEQSRSDRDDYVKIW--WDQILSGREHNFNKYDDSFSTDLNTPYDYESVMHYSPFSFNKGASEPTITTKIPEFN  207 (230)
T ss_pred             HHhCCcccccccccccceEEe--ecccCchHHHHhhhcCccccccCCCCCCcccccccCCCccccCCCCceeeecCCccc
Confidence            789999999999999966665  578999999999999998889999999999999999999999866799999988877


Q ss_pred             cccccccCCCHHHHHHHhhhccC
Q psy2949         272 DTMGQRDAMSRVDLAKLNRLYKC  294 (367)
Q Consensus       272 ~~~gqr~~~s~~D~~~in~~Y~C  294 (367)
                      .+||||.+||+.|+++||+||+|
T Consensus       208 ~~iGqr~~lS~~Di~~iN~~Y~C  230 (230)
T cd04282         208 DIIGQRLDFSDIDLERLNRMYNC  230 (230)
T ss_pred             ccccccCCCCHHHHHHHHHhcCC
Confidence            89999999999999999999999

Meprins are membrane-bound or secreted extracellular proteases, which cleave a variety of targets, including peptides such as parathyroid hormone, gastrin, and cholecystokinin, cytokines such as osteopontin, and proteins such as collagen IV, fibronectin, casein and gelatin. Meprins may also be able to release proteins from the cell surface. Closely related meprin alpha- and beta-subunits form homo- and hetero-oligomers; these complexes are found on epithelial cells of the intestine, for example, and are also expressed in certain cancer cells.

>cd04283 ZnMc_hatching_enzyme Zinc-dependent metalloprotease, hatching enzyme-like subfamily

Probab=99.83  E-value=1.1e-21  Score=174.86  Aligned_cols=96  Identities=34%  Similarity=0.644  Sum_probs=85.7

Q ss_pred             CccCccccccHHHHHHHHHHhcCCCCcccCcccccccCCCCcccccccCCCCCCcccccccccccCCCceeeeeCCCCCc
Q psy2949         192 DTMGQRDAMSRVDLAKLNRLYKCPKNYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAE  271 (367)
Q Consensus       192 ~~IG~r~~lS~~D~~~in~lY~C~~nI~~g~~~Nf~~~~~~~~~~~~~pYDy~SiMhY~~~~fs~~~~~~ti~~~~~~~~  271 (367)
                      |++|..++.|+.|++....+.  .+||.++...||++.+.   .+++.||||+|||||++.+||+++. +||+|+.+. .
T Consensus        87 HaLG~~HEhsRpDRD~yV~I~--~~nI~~~~~~nF~~~~~---~~~~~pYDy~SiMHY~~~afs~~g~-~Ti~~~~~~-~  159 (182)
T cd04283          87 HALGFYHEQTRSDRDKYVRIN--WENIIPDQLYNFDKQDT---NNLGTPYDYSSVMHYGRYAFSINGK-PTIVPIPDP-N  159 (182)
T ss_pred             HHhCCcccccccccCceEEEe--hhhcCchHHhhhhhccc---cccCCcccceeeeccCCcccccCCC-CeEEECCcc-c
Confidence            789999999999999966655  58899999999999865   4678999999999999999999875 899998654 3


Q ss_pred             cccccccCCCHHHHHHHhhhccC
Q psy2949         272 DTMGQRDAMSRVDLAKLNRLYKC  294 (367)
Q Consensus       272 ~~~gqr~~~s~~D~~~in~~Y~C  294 (367)
                      .+||||.+||+.|+++||+||+|
T Consensus       160 ~~iGqr~~lS~~Di~~iN~~Y~C  182 (182)
T cd04283         160 VPIGQRQGMSNLDILRINKLYNC  182 (182)
T ss_pred             ccccCCCCCCHHHHHHHHHhcCC
Confidence            58999999999999999999999

Hatching enzymes are secreted by teleost embryos to digest the egg envelope or chorion. In some teleosts, the hatching enzyme may be a system consisting of two evolutionary related metalloproteases, high choriolytic enzyme and low choriolytic enzyme (HCE and LCE), which may have different substrate specificities and cooperatively digest the chorion.

>cd00203 ZnMc Zinc-dependent metalloprotease

Probab=99.81  E-value=1.3e-19  Score=159.36  Aligned_cols=145  Identities=28%  Similarity=0.327  Sum_probs=107.6

Q ss_pred             eeEEEEcCC-------CCCHHHHHHHHHHHHHHHHcCCcEEEEcCCC--CceEEEecC------CCCccCCCCCC--CCC
Q psy2949          28 TVYYNFEDS-------EFTIYEKTLVENAIQDLRMHTCVRFVPRTNQ--DTYLRFRNT------GFGCASPVGYF--PIG   90 (367)
Q Consensus        28 ~VpY~~~~~-------~~~~~~~~~I~~A~~~w~~~tci~F~~~~~~--~~~I~i~~~------~~gc~S~vG~~--~g~   90 (367)
                      .|+|.|...       .++...++.|+.|++.|+..+||+|+++..+  ...|.|...      +.+|+|++|..  +..
T Consensus         2 ~i~~~i~~d~~~~~~~~~~~~~~~~v~~a~~~w~~~~~i~f~~~~~~~~~~di~~~~~~~~~~~~~~g~a~~~~~c~~~~   81 (167)
T cd00203           2 VIPYVVVADDRDVEEENLSAQIQSLILIAMQIWRDYLNIRFVLVGVEIDKADIAILVTRQDFDGGTGGWAYLGRVCDSLR   81 (167)
T ss_pred             EEEEEEEecccccchhhhHHHHHHHHHHHHHHHHhhhCceEEEeccCCCcCcEEEEeccccCCCCceEEEecCCccCCCC
Confidence            466766322       2677899999999999999999999999854  555555321      46789999885  322


Q ss_pred             cccccccCCCc----ccccchhHHHHHhhhcccccccCCCCCcceEEeeCCcCCCCCcccccCCCCcccccCCcCCCCCC
Q psy2949          91 TGIDIFLGGRV----CFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSI  166 (367)
Q Consensus        91 q~i~~~~l~~~----c~~~g~i~HEigHALG~~HEh~rpDRD~yv~I~~~ni~~~~~~nf~k~~~~~~~~~g~~YD~~SI  166 (367)
                      ..+.   +...    .....+++|||||||||.|++.+++||.+|++.                   ......++|..||
T Consensus        82 ~~~~---~~~~~~~~~~~~~~~~HElGH~LGl~H~~~~~~~~~~~~~~-------------------~~~~~~~~~~~si  139 (167)
T cd00203          82 GVGV---LQDNQSGTKEGAQTIAHELGHALGFYHDHDRKDRDDYPTID-------------------DTLNAEDDDYYSV  139 (167)
T ss_pred             CcEE---EecCCcccccchhhHHHHHHHHhCCCccCcCCCCCCCcccc-------------------ccccCCCCCCCeE
Confidence            2222   1112    245589999999999999999999999988772                   1124578999999


Q ss_pred             cCcccceeccCCCcceeeeCCCCCCCccCccccccHHHHHHHHHHh
Q psy2949         167 MHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLY  212 (367)
Q Consensus       167 MhY~~~~fs~~~~~~ti~~~~~~~~~~IG~r~~lS~~D~~~in~lY  212 (367)
                      |||....++                  ++++..+|..|+.+|+.+|
T Consensus       140 M~y~~~~~~------------------~~~~~~fS~~d~~~i~~~Y  167 (167)
T cd00203         140 MSYTKGSFS------------------DGQRKDFSQCDIDQINKLY  167 (167)
T ss_pred             eccCccccC------------------cccCCCcCHHHHHHHHhhC
Confidence            999875432                  4566779999999999987

This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.

>PF01400 Astacin: Astacin (Peptidase family M12A) This Prosite motif covers only the active site

Probab=99.78  E-value=3.5e-20  Score=167.33  Aligned_cols=103  Identities=37%  Similarity=0.669  Sum_probs=73.0

Q ss_pred             CccCccccccHHHHHHHHHHhcCCCCcccCcccccccCCCCcccccccCCCCCCcccccccccccCCCceeeeeCCCCCc
Q psy2949         192 DTMGQRDAMSRVDLAKLNRLYKCPKNYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAE  271 (367)
Q Consensus       192 ~~IG~r~~lS~~D~~~in~lY~C~~nI~~g~~~Nf~~~~~~~~~~~~~pYDy~SiMhY~~~~fs~~~~~~ti~~~~~~~~  271 (367)
                      |++|..++.++.|++....+.  .+||.++...||.+.+......++.||||+|||||++.+|++++..+||+|+++...
T Consensus        89 HaLG~~HEh~RpDRd~yi~i~--~~~i~~~~~~~f~~~~~~~~~~~~~pYD~~SIMHY~~~~~s~~~~~~ti~~~~~~~~  166 (191)
T PF01400_consen   89 HALGFWHEHQRPDRDNYITIN--WDNIQPGYKHNFDKYPPSEWSTYGSPYDYGSIMHYSSYAFSKNGSQPTITPKDPKYQ  166 (191)
T ss_dssp             HHHTB--GGGSTTGGGTEEE---GGGB-TTSGGGG---SGGGBE-TTS---TT-TT---TTTTBSSTTS-SEEESSTTCT
T ss_pred             HHHhhhhhhhccccccEEEEe--hhcchhhhhhhhhccccccccccCCCcCccCeecccCcccccCCCCCeEEecCCCCc
Confidence            789999999999999866665  478999999999999877788899999999999999999999998899999988778


Q ss_pred             cccccccCCCHHHHHHHhhhccCCC
Q psy2949         272 DTMGQRDAMSRVDLAKLNRLYKCPK  296 (367)
Q Consensus       272 ~~~gqr~~~s~~D~~~in~~Y~C~~  296 (367)
                      .+|||+.+||+.|+++||.||+|+.
T Consensus       167 ~~iG~~~~lS~~D~~~in~~Y~C~~  191 (191)
T PF01400_consen  167 ETIGQRNRLSFTDIKQINKMYNCPE  191 (191)
T ss_dssp             S-GGG-SS--HHHHHHHHHHTT---
T ss_pred             ccccccCCCCHHHHHHHHHhcCCCC
Confidence            8999999999999999999999973

; InterPro: IPR001506 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12A (astacin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The astacin () family of metalloendopeptidases encompasses a range of proteins found in hydra to humans, in mature and developmental systems []. Their functions include activation of growth factors, degradation of polypeptides, and processing of extracellular proteins []. The proteins are synthesised with N-terminal signal and pro-enzyme sequences, and many contain multiple domains C-terminal to the protease domain. They are either secreted from cells, or are associated with the plasma membrane. The astacin molecule adopts a kidney shape, with a deep active-site cleft between its N- and C-terminal domains []. The zinc ion, which lies at the bottom of the cleft, exhibits a unique penta-coordinated mode of binding, involving 3 histidine residues, a tyrosine and a water molecule (which is also bound to the carboxylate side chain of Glu93) []. The N-terminal domain comprises 2 alpha-helices and a 5-stranded beta-sheet. The overall topology of this domain is shared by the archetypal zinc-endopeptidase thermolysin. Astacin protease domains also share common features with serralysins, matrix metalloendopeptidases, and snake venom proteases; they cleave peptide bonds in polypeptides such as insulin B chain and bradykinin, and in proteins such as casein and gelatin; and they have arylamidase activity [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3LQB_A 3EDH_A 3EDG_A 3EDI_A 1IAE_A 1IAB_A 1IAA_A 1AST_A 1IAC_A 1QJJ_A ....

>cd04280 ZnMc_astacin_like Zinc-dependent metalloprotease, astacin_like subfamily or peptidase family M12A, a group of zinc-dependent proteolytic enzymes with a HExxH zinc-binding site/active site

Probab=99.75  E-value=1.5e-19  Score=161.75  Aligned_cols=97  Identities=39%  Similarity=0.672  Sum_probs=87.2

Q ss_pred             CccCccccccHHHHHHHHHHhcCCCCcccCcccccccCCCCcccccccCCCCCCcccccccccccCCCceeeeeCCCCCc
Q psy2949         192 DTMGQRDAMSRVDLAKLNRLYKCPKNYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAE  271 (367)
Q Consensus       192 ~~IG~r~~lS~~D~~~in~lY~C~~nI~~g~~~Nf~~~~~~~~~~~~~pYDy~SiMhY~~~~fs~~~~~~ti~~~~~~~~  271 (367)
                      |++|..++.++.|++....+.  .+||.++...||.+.+.....+++.||||+|||||++.+|++++. +||+|+++...
T Consensus        84 HalG~~HEh~R~DRD~yv~i~--~~ni~~~~~~nf~~~~~~~~~~~~~~YDy~SiMhY~~~~fs~~~~-~ti~~~~~~~~  160 (180)
T cd04280          84 HALGFYHEQSRPDRDDYVTIN--WENIQPGYEHNFDKYSPDTVTTYGVPYDYGSVMHYGPTAFSKNGK-PTIVPKDPGYQ  160 (180)
T ss_pred             HHhcCcchhcccccCCeEEEe--ecccChhHHHHhhhcCcccccccCCcCCcceEeccCCcccccCCC-ceEEECCchhh
Confidence            789999999999999855554  478999999999999998888899999999999999999999864 89999987764


Q ss_pred             cccccccCCCHHHHHHHhhhc
Q psy2949         272 DTMGQRDAMSRVDLAKLNRLY  292 (367)
Q Consensus       272 ~~~gqr~~~s~~D~~~in~~Y  292 (367)
                      . ||||.+||+.|+++||+||
T Consensus       161 ~-~g~~~~~S~~D~~~in~~Y  180 (180)
T cd04280         161 I-IGQREGLSFLDIKKINKMY  180 (180)
T ss_pred             c-ccCCCCCCHHHHHHHHHhC
Confidence            3 9999999999999999998

Members of this family may have an amino terminal propeptide, which is cleaved to yield the active protease domain, which is consequently always found at the N-terminus in multi-domain architectures. This family includes: astacin, a digestive enzyme from Crayfish; meprin, a multiple domain membrane component that is constructed from a homologous alpha and beta chain, proteins involved in (bone) morphogenesis, tolloid from drosophila, and the sea urchin SPAN protein, which may also play a role in development.

>cd04278 ZnMc_MMP Zinc-dependent metalloprotease, matrix metalloproteinase (MMP) sub-family

Probab=99.70  E-value=9.6e-17  Score=140.42  Aligned_cols=99  Identities=18%  Similarity=0.094  Sum_probs=66.8

Q ss_pred             CcCCCeeEEEEcCCCC----CHHHHHHHHHHHHHHHHcCCcEEEEcCCC-Cce--EEEecCCCCc-cCCCCCC-------
Q psy2949          23 LWPDKTVYYNFEDSEF----TIYEKTLVENAIQDLRMHTCVRFVPRTNQ-DTY--LRFRNTGFGC-ASPVGYF-------   87 (367)
Q Consensus        23 ~Wp~~~VpY~~~~~~~----~~~~~~~I~~A~~~w~~~tci~F~~~~~~-~~~--I~i~~~~~gc-~S~vG~~-------   87 (367)
                      +||+++|+|+| +...    ....++.|++||+.|+..+||+|++++.. ..-  |.+.....+| +++-|..       
T Consensus         1 kW~~~~itY~i-~~~~~~~~~~~~~~~i~~A~~~W~~~~~l~F~e~~~~~~adi~I~~~~~~~~~~~~~~~~~g~l~~a~   79 (157)
T cd04278           1 KWSKTNLTYRI-LNYPPDLPRDDVRRAIARAFRVWSDVTPLTFREVTSGQEADIRISFARGNHGDGYPFDGPGGTLAHAF   79 (157)
T ss_pred             CCCCCceeEEE-ECCCCCCCHHHHHHHHHHHHHHHHhhcCceeEEcccCCCCCEEEEEeecccCCCCCCCCCcccccccc
Confidence            69999999999 5443    37889999999999999999999998743 333  4444444454 3333321       


Q ss_pred             -----CCCcccc---cccC---CCcccccchhHHHHHhhhcccccc
Q psy2949          88 -----PIGTGID---IFLG---GRVCFLKGKIQHEILHSLGFWHEH  122 (367)
Q Consensus        88 -----~g~q~i~---~~~l---~~~c~~~g~i~HEigHALG~~HEh  122 (367)
                           .+...++   ..++   ..+.....+++|||||||||.|++
T Consensus        80 ~p~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~HEiGHaLGL~H~~  125 (157)
T cd04278          80 FPGGIGGDIHFDDDEQWTLGSDSGGTDLFSVAAHEIGHALGLGHSS  125 (157)
T ss_pred             CCCCcceeEEECCCcccccCCCCccchHHHHHHHHhccccccCCCC
Confidence                 1111222   1111   124445689999999999999974

MMPs are responsible for a great deal of pericellular proteolysis of extracellular matrix and cell surface molecules, playing crucial roles in morphogenesis, cell fate specification, cell migration, tissue repair, tumorigenesis, gain or loss of tissue-specific functions, and apoptosis. In many instances, they are anchored to cell membranes via trans-membrane domains, and their activity is controlled via TIMPs (tissue inhibitors of metalloproteinases).

>cd04277 ZnMc_serralysin_like Zinc-dependent metalloprotease, serralysin_like subfamily

Probab=99.55  E-value=4.4e-14  Score=126.95  Aligned_cols=141  Identities=17%  Similarity=0.141  Sum_probs=91.8

Q ss_pred             CCCHHHHHHHHHHHHHHHHcCCcEEEEcCCC-CceEEEecCC-----CCccCCCCCC------CCCcccccccC----CC
Q psy2949          37 EFTIYEKTLVENAIQDLRMHTCVRFVPRTNQ-DTYLRFRNTG-----FGCASPVGYF------PIGTGIDIFLG----GR  100 (367)
Q Consensus        37 ~~~~~~~~~I~~A~~~w~~~tci~F~~~~~~-~~~I~i~~~~-----~gc~S~vG~~------~g~q~i~~~~l----~~  100 (367)
                      .+++.+++.|++||+.|++.+||+|++++.. ...|+|....     .+++++.+..      .+.-.++....    ..
T Consensus        30 ~~~~~~~~~i~~A~~~w~~~~~l~F~e~~~~~~adI~i~~~~~~~~~~~g~a~~p~~~~~~~~~g~i~~~~~~~~~~~~~  109 (186)
T cd04277          30 ALSAAQQAAARDALEAWEDVADIDFVEVSDNSGADIRFGNSSDPDGNTAGYAYYPGSGSGTAYGGDIWFNSSYDTNSDSP  109 (186)
T ss_pred             cCCHHHHHHHHHHHHHHHhhcCceeEECCCCCcceEEEEeccCCCCCccEEEECCCCCccccccceeEEecCcccccCCC
Confidence            4578999999999999999999999999843 5677775432     3445544432      22333442111    23


Q ss_pred             cccccchhHHHHHhhhcccccccCCCCCcceEEeeCCcCCCCCcccccCCCCcccccCCcCCCCCCcCcccceeccCCCc
Q psy2949         101 VCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVS  180 (367)
Q Consensus       101 ~c~~~g~i~HEigHALG~~HEh~rpDRD~yv~I~~~ni~~~~~~nf~k~~~~~~~~~g~~YD~~SIMhY~~~~fs~~~~~  180 (367)
                      ++....+++|||||||||.|+|..++.+.+-.                       .....-.-.|||-|.......  . 
T Consensus       110 g~~~~~t~~HEiGHaLGL~H~~~~~~~~~~~~-----------------------~~~~~~~~~SVMSY~~~~~~~--~-  163 (186)
T cd04277         110 GSYGYQTIIHEIGHALGLEHPGDYNGGDPVPP-----------------------TYALDSREYTVMSYNSGYGNG--A-  163 (186)
T ss_pred             ChhhHHHHHHHHHHHhcCCCCCcCCCCCCCCc-----------------------cccccCcceEEEeecCCCCCC--c-
Confidence            66677999999999999999999887653210                       001112345899996542110  0 


Q ss_pred             ceeeeCCCCCCCccCccccccHHHHHHHHHHhc
Q psy2949         181 KTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYK  213 (367)
Q Consensus       181 ~ti~~~~~~~~~~IG~r~~lS~~D~~~in~lY~  213 (367)
                       .         ..-+....+...|++.|..||+
T Consensus       164 -~---------~~~~~~~~~~~~DI~AlQ~lYG  186 (186)
T cd04277         164 -S---------AGGGYPQTPMLLDIAALQYLYG  186 (186)
T ss_pred             -c---------ccCcccCCccHHHHHHHHHhhC
Confidence             0         0113335678899999999984

Serralysins and related proteases are important virulence factors in pathogenic bacteria. They may be secreted into the medium via a mechanism found in gram-negative bacteria, that does not require n-terminal signal sequences which are cleaved after the transmembrane translocation. A calcium-binding domain c-terminal to the metalloprotease domain, which contains multiple tandem repeats of a nine-residue motif including the pattern GGxGxD, and which forms a parallel beta roll may be involved in the translocation mechanism and/or substrate binding. Serralysin family members may have a broad spectrum of substrates each, including host immunoglobulins, complement proteins, cell matrix and cytoskeletal proteins, as well as antimicrobial peptides.

>cd04279 ZnMc_MMP_like_1 Zinc-dependent metalloprotease; MMP_like sub-family 1

Probab=99.50  E-value=1.7e-13  Score=119.74  Aligned_cols=98  Identities=21%  Similarity=0.244  Sum_probs=60.9

Q ss_pred             eeEEEEcCCC-----CCHHHHHHHHHHHHHHHHcCCcEEEEcCC---CCceEEEecC-------CCCccCCCCCCC----
Q psy2949          28 TVYYNFEDSE-----FTIYEKTLVENAIQDLRMHTCVRFVPRTN---QDTYLRFRNT-------GFGCASPVGYFP----   88 (367)
Q Consensus        28 ~VpY~~~~~~-----~~~~~~~~I~~A~~~w~~~tci~F~~~~~---~~~~I~i~~~-------~~gc~S~vG~~~----   88 (367)
                      .|+|+++...     .....++.|++||+.|++.+||+|++...   ..+.+.++..       +..|.++.+..-    
T Consensus         3 ~i~~~i~~~~~~~~~~~~~~~~~v~~A~~~W~~~~~l~F~~~~~~~~~adi~I~f~~~~~~~~~g~~~a~a~~p~~~~~~   82 (156)
T cd04279           3 PIRVYIDPTPAPPDSRAQSWLQAVKQAAAEWENVGPLKFVYNPEEDNDADIVIFFDRPPPVGGAGGGLARAGFPLISDGN   82 (156)
T ss_pred             CeEEEEcCCCCccccchHHHHHHHHHHHHHHHHhCCeEEEEccCCCCCCcEEEEecCCCCCCCCCCceEEecccccCCCc
Confidence            5788884432     25678999999999999999999999874   3333222221       233433333210    


Q ss_pred             --C--CcccccccCCC--cccccchhHHHHHhhhcccccccCC
Q psy2949          89 --I--GTGIDIFLGGR--VCFLKGKIQHEILHSLGFWHEHTRP  125 (367)
Q Consensus        89 --g--~q~i~~~~l~~--~c~~~g~i~HEigHALG~~HEh~rp  125 (367)
                        +  ...++......  .....++++|||||||||.||++++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~HEiGHaLGL~H~~~~~  125 (156)
T cd04279          83 RKLFNRTDINLGPGQPRGAENLQAIALHELGHALGLWHHSDRP  125 (156)
T ss_pred             ccccccceEeecCCcCccchHHHHHHHHHhhhhhcCCCCCCCc
Confidence              1  11122100000  1223589999999999999999865

A group of bacterial, archaeal, and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.

>PF00413 Peptidase_M10: Matrixin This Prosite motif covers only the active site

Probab=99.47  E-value=7.9e-13  Score=114.59  Aligned_cols=100  Identities=20%  Similarity=0.246  Sum_probs=61.8

Q ss_pred             CcCCCeeEEEEcCCC--C-CHHHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEEe--cC-CCCccCCCCCC--------C
Q psy2949          23 LWPDKTVYYNFEDSE--F-TIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFR--NT-GFGCASPVGYF--------P   88 (367)
Q Consensus        23 ~Wp~~~VpY~~~~~~--~-~~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i~--~~-~~gc~S~vG~~--------~   88 (367)
                      +||..+|.|+|....  + .+..+++|++||+.|+..+.|+|++......-|.|.  .. ...+..+-|..        +
T Consensus         1 ~W~~~~ity~i~~~~~~~~~~~~~~~i~~A~~~W~~~~~~~F~~~~~~~adi~i~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (154)
T PF00413_consen    1 KWPKKTITYSISNTTPQLSQSEQRDAIRQAFQAWNDVAPLNFTEVSDGNADIRISFGSNNHGDGYSFDGSGGTLAHAYFP   80 (154)
T ss_dssp             SSSSSEEEEEESSBCTTS-HHHHHHHHHHHHHHHHTTSSEEEEEESSSSCSEEEEEESSSSSSSS-CSSSSSESEEEEES
T ss_pred             CCCCCcEEEEEECCCCCCCHHHHHHHHHHHHHHHHhcCCceEEeccCCCcceeeeeeccccCcccccccceeeeeccccc
Confidence            699999999993322  1 256889999999999999999999998433444442  22 12222221211        1


Q ss_pred             -----CCcccc---cccCCCccc-ccchhHHHHHhhhcccccc
Q psy2949          89 -----IGTGID---IFLGGRVCF-LKGKIQHEILHSLGFWHEH  122 (367)
Q Consensus        89 -----g~q~i~---~~~l~~~c~-~~g~i~HEigHALG~~HEh  122 (367)
                           +...++   ......... ...+++|||||||||.|++
T Consensus        81 ~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~HEiGHaLGL~H~~  123 (154)
T PF00413_consen   81 NNIVSGDIHFNDDESWTIDDSGNDLQSVAIHEIGHALGLDHSN  123 (154)
T ss_dssp             SSTTTTEEEEETTSHEESSSSSEEHHHHHHHHHHHHTTBESSS
T ss_pred             cccccccccccccccchhhhhhhhhhhhhhhccccccCcCcCC
Confidence                 111111   000111222 2379999999999999975

; InterPro: IPR001818 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M10 (clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Sequences having this domain are extracellular metalloproteases, such as collagenase and stromelysin, which degrade the extracellular matrix, are known as matrixins. They are zinc-dependent, calcium-activated proteases synthesised as inactive precursors (zymogens), which are proteolytically cleaved to yield the active enzyme [, ]. All matrixins and related proteins possess 2 domains: an N-terminal domain, and a zinc-binding active site domain. The N-terminal domain peptide, cleaved during the activation step, includes a conserved PRCGVPDV octapeptide, known as the cysteine switch, whose Cys residue chelates the active site zinc atom, rendering the enzyme inactive [, ]. The active enzyme degrades components of the extracellular matrix, playing a role in the initial steps of tissue remodelling during morphogenesis, wound healing, angiogenesis and tumour invasion [, ].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0031012 extracellular matrix; PDB: 1Q3A_C 3V96_B 1HV5_D 1CXV_A 1SRP_A 1FBL_A 1ZVX_A 1JH1_A 1I76_A 2OY4_A ....

>cd04327 ZnMc_MMP_like_3 Zinc-dependent metalloprotease; MMP_like sub-family 3

Probab=99.24  E-value=2.1e-12  Score=117.35  Aligned_cols=87  Identities=21%  Similarity=0.220  Sum_probs=64.2

Q ss_pred             CccCccccccHHHHH------HHHHHhcCCCC-cccCcc--cccccCCCCcccccccCCCCCCccccc-ccccccCCCce
Q psy2949         192 DTMGQRDAMSRVDLA------KLNRLYKCPKN-YYQGHE--FNLERRPAGSVRTFSMPYDYGSIMHYS-GIAFSKDGVSK  261 (367)
Q Consensus       192 ~~IG~r~~lS~~D~~------~in~lY~C~~n-I~~g~~--~Nf~~~~~~~~~~~~~pYDy~SiMhY~-~~~fs~~~~~~  261 (367)
                      |++|..|+.|+.|++      .|...|.-..+ +..+..  .+|.+.+.  ...++.||||+|||||+ +.+|++++. +
T Consensus       102 HaLG~~HEh~rpdrdi~w~~~~i~~~~~~~~~~~~~~~~~~~~f~~~~~--~~~~~~~yD~~SIMHY~~~~~~t~~g~-~  178 (198)
T cd04327         102 HALGFIHEHQSPAANIPWDKEAVYAYFSGPPNWDRETVINHNVFAKLDD--GDVAYSPYDPDSIMHYPFPGSLTLDGE-E  178 (198)
T ss_pred             HHhcCcccccCCCCCCCcCHHHHHHHHhcCCCCcHHHHHHhhhhhcccc--ccccCCCCCcHHHHcCCCcHHhhcCCc-c
Confidence            788888999999886      22233322212 222222  67888764  34689999999999999 899998875 2


Q ss_pred             eeeeCCCCCccccccccCCCHHHHHHHhhhcc
Q psy2949         262 TIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYK  293 (367)
Q Consensus       262 ti~~~~~~~~~~~gqr~~~s~~D~~~in~~Y~  293 (367)
                      |            |++.+||..|+++||+||.
T Consensus       179 t------------~~~~~lS~~D~~~i~~~Yp  198 (198)
T cd04327         179 V------------PPNRTLSDKDKAFMRLLYP  198 (198)
T ss_pred             c------------CCCCCCCHHHHHHHHHhCc
Confidence            2            6778999999999999994

A group of bacterial and fungal metalloproteinase domains similar to matrix metalloproteinases and astacin.

>PF12388 Peptidase_M57: Dual-action HEIGH metallo-peptidase; InterPro: IPR024653 This entry represents the metallopeptidases M10, M27 and M57

Probab=98.97  E-value=7.1e-09  Score=93.93  Aligned_cols=178  Identities=22%  Similarity=0.264  Sum_probs=95.2

Q ss_pred             CCCccC-Ccccccccc----cc---ccCCCCcC--CCeeEEEEcCC----CCCHHHHHHHHHHHHHHHH-cCCcEEEEc-
Q psy2949           1 MEGDIL-IPRERDSRN----LV---LYQAQLWP--DKTVYYNFEDS----EFTIYEKTLVENAIQDLRM-HTCVRFVPR-   64 (367)
Q Consensus         1 ~~GDi~-~~~q~~~r~----a~---~~~~~~Wp--~~~VpY~~~~~----~~~~~~~~~I~~A~~~w~~-~tci~F~~~-   64 (367)
                      .||||+ +++|+++..    ..   -++..+|.  ..+|...+ ..    +++...+..+.+||+.|+. ...|+|.-. 
T Consensus         3 vegDi~~s~~~l~~~~~~~~~~~eqYrTtnlV~~~~~~I~i~~-~~~~~~~l~s~~~~al~~AI~~yNalgl~i~F~~t~   81 (211)
T PF12388_consen    3 VEGDIFVSKKQLREMLQSDDGTSEQYRTTNLVGSSPRTITIIG-YTGGSQSLNSAWRTALDEAINNYNALGLSITFTLTF   81 (211)
T ss_pred             eccceEEcHHHHhhhhccCCcchhheeeeeeecCCCCEEEEEe-CCCccccccHHHHHHHHHHHHHHHhhCCceEEEEec
Confidence            489999 887743322    11   12345673  34788888 55    5678899999999999999 557888411 


Q ss_pred             -C--CCCceEEEecCC---CCccCCCCCC--CCC--cccccccCCCccc--ccchhHHHHHhhhcccccccCCCCCcceE
Q psy2949          65 -T--NQDTYLRFRNTG---FGCASPVGYF--PIG--TGIDIFLGGRVCF--LKGKIQHEILHSLGFWHEHTRPDRDQFVR  132 (367)
Q Consensus        65 -~--~~~~~I~i~~~~---~gc~S~vG~~--~g~--q~i~~~~l~~~c~--~~g~i~HEigHALG~~HEh~rpDRD~yv~  132 (367)
                       .  ...+.+.+....   .|--..-|..  +|.  ..+....+...-.  ...+|+|||||+|||.|+.          
T Consensus        82 g~~~~~~di~v~~~~~~~~~G~ggsAGFP~s~G~P~~~I~I~~~~~~~~~~~~hvi~HEiGH~IGfRHTD----------  151 (211)
T PF12388_consen   82 GTNYQNADIIVYSNSSNNPSGAGGSAGFPTSNGNPYKFIQIYGLSNYSVNVIEHVITHEIGHCIGFRHTD----------  151 (211)
T ss_pred             CCCcCCCceEEEeccCCCCCCcceeccCCCCCCCCCceEEEEecCCCchhHHHHHHHHHhhhhccccccC----------
Confidence             1  233444442211   1111111222  121  1111111111111  2369999999999999975          


Q ss_pred             EeeCCcCC-CCCcccccCCCCcccccCCc--CCCCCCcCcccceeccCCCcceeeeCCCCCCCccCccccccHHHHHHHH
Q psy2949         133 VLRENIGP-GHEFNLERRPTGSVRTFGMP--YDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLN  209 (367)
Q Consensus       133 I~~~ni~~-~~~~nf~k~~~~~~~~~g~~--YD~~SIMhY~~~~fs~~~~~~ti~~~~~~~~~~IG~r~~lS~~D~~~in  209 (367)
                        |.+-.. +...|=.--....+..-|+|  +|..|||.-.-.                     -+...+++..|+..|+
T Consensus       152 --~~~R~SCG~~~nEg~~~vGAi~IpGTPt~~d~~SiM~ac~~---------------------~~~~~~f~~~Di~Al~  208 (211)
T PF12388_consen  152 --YFNRSSCGSGGNEGSAGVGAIHIPGTPTGADPNSIMNACFS---------------------SGEDGEFTSNDITALN  208 (211)
T ss_pred             --cCCcccccccCCcCccccceEECCCCCCCCCCchhhhcccc---------------------CCCCCCcChhhHHHHH
Confidence              222110 00000000000011222443  599999987421                     1234568999999999


Q ss_pred             HHh
Q psy2949         210 RLY  212 (367)
Q Consensus       210 ~lY  212 (367)
                      .||
T Consensus       209 ~lY  211 (211)
T PF12388_consen  209 YLY  211 (211)
T ss_pred             hhC
Confidence            998

The catalytic triad for proteases in this entry is HE-H-H, which in many members is in the sequence motif HEIGH [].

>cd04276 ZnMc_MMP_like_2 Zinc-dependent metalloprotease; MMP_like sub-family 2

Probab=98.55  E-value=1.2e-06  Score=79.36  Aligned_cols=31  Identities=13%  Similarity=0.296  Sum_probs=27.1

Q ss_pred             CCCeeEEEEcCCCCCHHHHHHHHHHHHHHHHc
Q psy2949          25 PDKTVYYNFEDSEFTIYEKTLVENAIQDLRMH   56 (367)
Q Consensus        25 p~~~VpY~~~~~~~~~~~~~~I~~A~~~w~~~   56 (367)
                      |+..|.|.| +..++...++.|++|++.|++.
T Consensus         6 pk~pItyyI-~~~~p~~~r~aI~~A~~~Wn~~   36 (197)
T cd04276           6 PKEPIVYYL-DNTFPEKYRDAIREGVLYWNKA   36 (197)
T ss_pred             CCCCEEEEe-cCCCcHHHHHHHHHHHHHHHHH
Confidence            567899999 6667789999999999999885

A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.

>KOG1565|consensus

Probab=98.50  E-value=7.6e-07  Score=90.57  Aligned_cols=104  Identities=16%  Similarity=0.111  Sum_probs=66.4

Q ss_pred             cccCCCCcCCCeeEEEEcCCCC----CHHHHHHHHHHHHHHHHcCCcEEEEcCC-CCceEEEe--cCCCCccC-------
Q psy2949          17 VLYQAQLWPDKTVYYNFEDSEF----TIYEKTLVENAIQDLRMHTCVRFVPRTN-QDTYLRFR--NTGFGCAS-------   82 (367)
Q Consensus        17 ~~~~~~~Wp~~~VpY~~~~~~~----~~~~~~~I~~A~~~w~~~tci~F~~~~~-~~~~I~i~--~~~~gc~S-------   82 (367)
                      ......+|+...|+|+| ....    ....+.++++|+..|++.|-++|.|+.. ...-|.|.  ....|+..       
T Consensus        99 ~~~~~~kW~k~~lT~ri-~n~~~~l~~~~vr~~~~~Af~~Ws~vtpl~f~e~~~~~~aDi~i~F~~~~h~d~~PFDG~~g  177 (469)
T KOG1565|consen   99 YFPGKPKWNKEHLTYRI-KNYTPYLPQAEVRCAKSEAFKLWSDVTPLTFQEVKEEGEADIRISFFPGDHGDGFPFDGPGG  177 (469)
T ss_pred             cCcccCcccccccceec-cccCCCCCHHHHHHHHHHHHhhcccCCCCccccCCCCCCCceeeeeeccCCCCCCcccCCCC
Confidence            33456799999999999 3322    4678999999999999999999999984 44444443  22223211       


Q ss_pred             CCCC-------CCCCcccc---cccCC--CcccccchhHHHHHhhhccccc
Q psy2949          83 PVGY-------FPIGTGID---IFLGG--RVCFLKGKIQHEILHSLGFWHE  121 (367)
Q Consensus        83 ~vG~-------~~g~q~i~---~~~l~--~~c~~~g~i~HEigHALG~~HE  121 (367)
                      .+.+       .+|.-...   .+.++  .+-....|++|||||||||.|.
T Consensus       178 ~laHAf~Pg~~~~G~~hfD~dE~Wt~~~~~g~~l~~Va~HEiGH~LGL~HS  228 (469)
T KOG1565|consen  178 VLAHAFFPGPGIGGDLHFDKDETWTYGDSNGVDLFLVAAHEIGHALGLGHS  228 (469)
T ss_pred             ceecccCCCCCCCCccccCcccceeccCCccchhHHHhhhhcccccccCCC
Confidence            1111       11111111   22221  1334458999999999999998

>cd04268 ZnMc_MMP_like Zinc-dependent metalloprotease, MMP_like subfamily

Probab=97.72  E-value=1.4e-05  Score=69.80  Aligned_cols=44  Identities=27%  Similarity=0.391  Sum_probs=38.6

Q ss_pred             cccccCCCCCCcccccccccccCCCceeeeeCCCCCccccccccCCCHHHHHHHhhhc
Q psy2949         235 RTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLY  292 (367)
Q Consensus       235 ~~~~~pYDy~SiMhY~~~~fs~~~~~~ti~~~~~~~~~~~gqr~~~s~~D~~~in~~Y  292 (367)
                      ..++.+||+.|||||....|+.+              ..+|++..++..||+.|+.||
T Consensus       122 ~~~~~~~~~~SvM~y~~~~~~~~--------------~~~~~~~~~~~~Di~ai~~lY  165 (165)
T cd04268         122 DLLAEKGDTSSVMDYAPSNFSIQ--------------LGDGQKYTIGPYDIAAIKKLY  165 (165)
T ss_pred             hhhccCCCCcccCCCCccccccc--------------cccccCCCCCHHHHHHHHhcC
Confidence            57888999999999999998765              245788999999999999998

This group contains matrix metalloproteinases (MMPs), serralysins, and the astacin_like family of proteases.

>PF02031 Peptidase_M7: Streptomyces extracellular neutral proteinase (M7) family; InterPro: IPR000013 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.65  E-value=3e-05  Score=64.48  Aligned_cols=86  Identities=20%  Similarity=0.091  Sum_probs=45.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHHHHHHHH-cCCcEEEEcCCCCceEEEecCCCCccCCCCCCC-CCcccccc-cCCCcccc
Q psy2949          28 TVYYNFEDSEFTIYEKTLVENAIQDLRM-HTCVRFVPRTNQDTYLRFRNTGFGCASPVGYFP-IGTGIDIF-LGGRVCFL  104 (367)
Q Consensus        28 ~VpY~~~~~~~~~~~~~~I~~A~~~w~~-~tci~F~~~~~~~~~I~i~~~~~gc~S~vG~~~-g~q~i~~~-~l~~~c~~  104 (367)
                      +|.|.- +.  .++.+..|.+|.+.|+. .++|+|++...  ..+++......-+|+-...+ |.-.|-.. ....+-..
T Consensus         3 tv~Yda-s~--A~~f~~~i~~aa~iWN~sV~NV~L~~~s~--a~~~~~~~~~~~~sya~~~g~G~G~I~l~~~~~qgy~~   77 (132)
T PF02031_consen    3 TVYYDA-SR--APEFRSAIAQAAQIWNSSVSNVRLVEGSS--ADIRYYEGNDPRGSYASTDGLGSGYIFLDYQQNQGYNS   77 (132)
T ss_dssp             EEEEEE-EE---GGGHHHHHHHHHHHHHH-SSEEEEE-SS---SEEEEEE--TT--EEEE-SSS-EEEEEEHHHHHHS-H
T ss_pred             EEEEeC-CC--CchhHHHHHHHHHHHhcccCceEEeecCC--CcEEEEEecCCCCcccccCCCCcEEEEechHHhhCCcc
Confidence            466665 32  45788999999999987 78999999875  33334322222233322221 11112100 00123333


Q ss_pred             cchhHHHHHhhhcc
Q psy2949         105 KGKIQHEILHSLGF  118 (367)
Q Consensus       105 ~g~i~HEigHALG~  118 (367)
                      ..+++|||||.|||
T Consensus        78 ~RIaaHE~GHiLGL   91 (132)
T PF02031_consen   78 TRIAAHELGHILGL   91 (132)
T ss_dssp             HHHHHHHHHHHHT-
T ss_pred             ceeeeehhccccCC
Confidence            47999999999997

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M7 (snapalysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. With a molecular weight of around 16kDa, Streptomyces extracellular neutral protease is one of the smallest known proteases []; it is capable of hydrolysing milk proteins []. The enzyme is synthesised as a proenzyme with a signal peptide, a propeptide and an active domain that contains the conserved HEXXH motif characteristic of metalloproteases. Although family M7 shows active site sequence similarity to other members, it differs in one major respect: the third zinc ligand appears to be an aspartate residue rather than the usual histidine.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0005576 extracellular region; PDB: 1C7K_A 1KUH_A.

>COG5549 Predicted Zn-dependent protease [Posttranslational modification, protein turnover, chaperones]

Probab=97.20  E-value=0.00076  Score=60.71  Aligned_cols=80  Identities=15%  Similarity=0.023  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEEecCCCC-ccCCCCC-------------CCCCcccc---cccCCCcc
Q psy2949          40 IYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFG-CASPVGY-------------FPIGTGID---IFLGGRVC  102 (367)
Q Consensus        40 ~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i~~~~~g-c~S~vG~-------------~~g~q~i~---~~~l~~~c  102 (367)
                      +...+.+..|++.|.+.-.+..+++.++.|......+..| -|.-.|+             .-+.-.+|   .+....+-
T Consensus       103 p~wq~a~~tava~wa~~fpl~ive~~eeaDItie~~n~pgtg~~~~grArtal~~~efl~~~~~~~~lnhr~~i~~~pg~  182 (236)
T COG5549         103 PRWQGAYLTAVAGWAKTFPLIIVERFEEADITIEVGNPPGTGWRQYGRARTALIAYEFLGHALGLGHLNHRGDIMYPPGE  182 (236)
T ss_pred             hhHHHHHHHHHHHHHHhCCceeeecceeeeEEEEecCCCCCcccccchHHHHHHHHHHhhhccCcccccccccccCCccc
Confidence            3568999999999999866666776554444333333222 1222222             11111122   00011111


Q ss_pred             c---ccchhHHHHHhhhccc
Q psy2949         103 F---LKGKIQHEILHSLGFW  119 (367)
Q Consensus       103 ~---~~g~i~HEigHALG~~  119 (367)
                      .   ..+++.||+|||||++
T Consensus       183 ~~e~L~~tarhElGhaLgi~  202 (236)
T COG5549         183 LRENLNPTARHELGHALGIW  202 (236)
T ss_pred             chhhhhHHHHHhhcchheec
Confidence            1   2389999999999976

>PF13583 Reprolysin_4: Metallo-peptidase family M12B Reprolysin-like

Probab=95.73  E-value=0.0045  Score=56.62  Aligned_cols=19  Identities=37%  Similarity=0.588  Sum_probs=17.4

Q ss_pred             cchhHHHHHhhhccccccc
Q psy2949         105 KGKIQHEILHSLGFWHEHT  123 (367)
Q Consensus       105 ~g~i~HEigHALG~~HEh~  123 (367)
                      ..+++|||||+||+.|+..
T Consensus       138 ~~~~aHEiGH~lGl~H~~~  156 (206)
T PF13583_consen  138 YQTFAHEIGHNLGLRHDFD  156 (206)
T ss_pred             chHHHHHHHHHhcCCCCcc
Confidence            3679999999999999987

>PF13582 Reprolysin_3: Metallo-peptidase family M12B Reprolysin-like; PDB: 3P24_C

Probab=95.58  E-value=0.0053  Score=50.92  Aligned_cols=19  Identities=37%  Similarity=0.455  Sum_probs=13.2

Q ss_pred             cccchhHHHHHhhhccccc
Q psy2949         103 FLKGKIQHEILHSLGFWHE  121 (367)
Q Consensus       103 ~~~g~i~HEigHALG~~HE  121 (367)
                      ....+++|||||.||+.|-
T Consensus       106 ~~~~~~~HEiGH~lGl~Hd  124 (124)
T PF13582_consen  106 SGVDTFAHEIGHNLGLNHD  124 (124)
T ss_dssp             TSTTHHHHHHHHHTT----
T ss_pred             ccceEeeehhhHhcCCCCC
Confidence            3458999999999999993

>PF13574 Reprolysin_2: Metallo-peptidase family M12B Reprolysin-like; PDB: 1KAP_P 1JIW_P 1AKL_A 1OM7_A 1OM8_A 1O0T_A 1OM6_A 1H71_P 1O0Q_A 1OMJ_A

Probab=95.45  E-value=0.01  Score=52.72  Aligned_cols=20  Identities=30%  Similarity=0.345  Sum_probs=14.9

Q ss_pred             ccchhHHHHHhhhccccccc
Q psy2949         104 LKGKIQHEILHSLGFWHEHT  123 (367)
Q Consensus       104 ~~g~i~HEigHALG~~HEh~  123 (367)
                      ...+++|||||.||..|...
T Consensus       111 ~~~~~aHElGH~lGa~Hd~~  130 (173)
T PF13574_consen  111 GIDTFAHELGHQLGAPHDFD  130 (173)
T ss_dssp             HHHHHHHHHHHHHT---SSS
T ss_pred             eeeeehhhhHhhcCCCCCCC
Confidence            34689999999999999987

...

>PF05548 Peptidase_M11: Gametolysin peptidase M11; InterPro: IPR008752 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.34  E-value=0.031  Score=54.40  Aligned_cols=81  Identities=20%  Similarity=0.249  Sum_probs=48.1

Q ss_pred             CHHHHHHHHHHHHHHHHcC-Cc-EEEEcCCCCceEEEecCCCCc-cCCCCCCCCCcccccccCCCcccccchhHHHHHhh
Q psy2949          39 TIYEKTLVENAIQDLRMHT-CV-RFVPRTNQDTYLRFRNTGFGC-ASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHS  115 (367)
Q Consensus        39 ~~~~~~~I~~A~~~w~~~t-ci-~F~~~~~~~~~I~i~~~~~gc-~S~vG~~~g~q~i~~~~l~~~c~~~g~i~HEigHA  115 (367)
                      +..+.-.+..+.+.+-+.. .+ .|   ..-..+|.|...+..| |+-+|..+|.+..- ..-+.++...++++||+||-
T Consensus        86 ~~~d~~~~~~~Ad~~a~~~lG~~~~---s~y~h~vyvlP~~~~C~w~Gla~v~G~~~~~-~~~~~~~~~~~~~~HElgHN  161 (314)
T PF05548_consen   86 STDDWYGWADAADAAARAQLGVNAF---SSYTHRVYVLPPGFACGWAGLATVPGSQSWL-WISGYGVQDWATIMHELGHN  161 (314)
T ss_pred             chHHHHHHHHHHHHHHHhhcCcccc---cccceEEEEcCCCCCCCceEEeecCCcceee-eecCcccccHHHHHHHhhhh
Confidence            3344556777777776654 33 23   2234456665555456 44444454544221 11234566778999999999


Q ss_pred             hccccccc
Q psy2949         116 LGFWHEHT  123 (367)
Q Consensus       116 LG~~HEh~  123 (367)
                      |||.|...
T Consensus       162 ~GL~Ha~~  169 (314)
T PF05548_consen  162 LGLWHAGR  169 (314)
T ss_pred             ccccccCC
Confidence            99999963

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M11 (gametolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The type example is gametolysin from the unicellular biflagellated alga, Chlamydomonas reinhardtii Gametolysin is a zinc-containing metallo-protease, which is responsible for the degradation of the cell wall. Homologues of gametolysin have also been reported in the simple multicellular organism, Volvox [, ].

>PF05572 Peptidase_M43: Pregnancy-associated plasma protein-A; InterPro: IPR008754 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.24  E-value=0.0082  Score=52.39  Aligned_cols=20  Identities=30%  Similarity=0.527  Sum_probs=13.5

Q ss_pred             chhHHHHHhhhcccccccCC
Q psy2949         106 GKIQHEILHSLGFWHEHTRP  125 (367)
Q Consensus       106 g~i~HEigHALG~~HEh~rp  125 (367)
                      .|++||+||-|||.|-.+..
T Consensus        71 ~TltHEvGH~LGL~HtF~~~   90 (154)
T PF05572_consen   71 KTLTHEVGHWLGLYHTFGGG   90 (154)
T ss_dssp             HHHHHHHHHHTT---TT---
T ss_pred             cchhhhhhhhhcccccccCC
Confidence            79999999999999998754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase M43 (cytophagalysin family, clan MA(M)), subfamily M43. The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The type example of this family is the pregnancy-associated plasma protein A (PAPP-A), which cleaves insulin-like growth factor (IGF) binding protein-4 (IGFBP-4), causing a dramatic reduction in its affinity for IGF-I and -II. Through this mechanism, PAPP-A is a regulator of IGF bioactivity in several systems, including the Homo sapiens ovary and the cardiovascular system [, , , ].; PDB: 3LUN_A 3LUM_B 2J83_A 2CKI_A.

>cd04267 ZnMc_ADAM_like Zinc-dependent metalloprotease, ADAM_like or reprolysin_like subgroup

Probab=94.94  E-value=0.015  Score=52.19  Aligned_cols=18  Identities=33%  Similarity=0.429  Sum_probs=16.5

Q ss_pred             chhHHHHHhhhccccccc
Q psy2949         106 GKIQHEILHSLGFWHEHT  123 (367)
Q Consensus       106 g~i~HEigHALG~~HEh~  123 (367)
                      .+++||+||.||+.|...
T Consensus       135 ~~~aHElGH~lG~~HD~~  152 (192)
T cd04267         135 LTMAHELGHNLGAEHDGG  152 (192)
T ss_pred             hhhhhhHHhhcCCcCCCC
Confidence            689999999999999864

The adamalysin_like or ADAM family of metalloproteases contains proteolytic domains from snake venoms, proteases from the mammalian reproductive tract, and the tumor necrosis factor alpha convertase, TACE. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.

>cd00203 ZnMc Zinc-dependent metalloprotease

Probab=94.80  E-value=0.023  Score=49.38  Aligned_cols=40  Identities=38%  Similarity=0.577  Sum_probs=33.3

Q ss_pred             cccccCCCCCCcccccccccccCCCceeeeeCCCCCccccccccCCCHHHHHHHhhhc
Q psy2949         235 RTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLY  292 (367)
Q Consensus       235 ~~~~~pYDy~SiMhY~~~~fs~~~~~~ti~~~~~~~~~~~gqr~~~s~~D~~~in~~Y  292 (367)
                      .....++++.|||||....|+                  ++++..||.-|+.+|+++|
T Consensus       128 ~~~~~~~~~~siM~y~~~~~~------------------~~~~~~fS~~d~~~i~~~Y  167 (167)
T cd00203         128 TLNAEDDDYYSVMSYTKGSFS------------------DGQRKDFSQCDIDQINKLY  167 (167)
T ss_pred             cccCCCCCCCeEeccCccccC------------------cccCCCcCHHHHHHHHhhC
Confidence            356778999999999866553                  4677889999999999998

This super-family of metalloproteases contains two major branches, the astacin-like proteases and the adamalysin/reprolysin-like proteases. Both branches have wide phylogenetic distribution, and contain sub-families, which are involved in vertebrate development and disease.

>smart00042 CUB Domain first found in C1r, C1s, uEGF, and bone morphogenetic protein

Probab=94.76  E-value=0.024  Score=44.69  Aligned_cols=29  Identities=21%  Similarity=0.285  Sum_probs=24.8

Q ss_pred             ccCCCCCCCCCCCCCCCCcEEEEcccCCCcccc
Q psy2949         308 YSTSGPIPDLGYLPTGSGWFYKIGGPSDDRKIM  340 (367)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~r~~~  340 (367)
                      .+|++|.+    ++.+.+|.|.|.+|++.++.+
T Consensus         4 ~Sp~yP~~----y~~~~~C~w~i~~~~g~~i~l   32 (102)
T smart00042        4 TSPNYPQS----YPNNLDCVWTIRAPPGYRIEL   32 (102)
T ss_pred             eCCCCCcC----CCCCCcEEEEEECCCCeEEEE
Confidence            37888876    789999999999999987765

This domain is found mostly among developmentally-regulated proteins. Spermadhesins contain only this domain.

>PF13688 Reprolysin_5: Metallo-peptidase family M12; PDB: 2FV5_B 3EWJ_A 3KME_A 3L0T_B 1BKC_E 3G42_D 2I47_D 2FV9_B 3LEA_A 1ZXC_B

Probab=94.49  E-value=0.018  Score=51.74  Aligned_cols=23  Identities=30%  Similarity=0.254  Sum_probs=14.4

Q ss_pred             ccchhHHHHHhhhcccccccCCC
Q psy2949         104 LKGKIQHEILHSLGFWHEHTRPD  126 (367)
Q Consensus       104 ~~g~i~HEigHALG~~HEh~rpD  126 (367)
                      ..-+++|||||.||..|.+..+.
T Consensus       142 ~~~~~AHEiGH~lGa~HD~~~~~  164 (196)
T PF13688_consen  142 GAITFAHEIGHNLGAPHDGDYSS  164 (196)
T ss_dssp             HHHHHHHHHHHHTT-----SSS-
T ss_pred             eehhhHHhHHHhcCCCCCCCCCC
Confidence            34799999999999999887654

...

>cd04275 ZnMc_pappalysin_like Zinc-dependent metalloprotease, pappalysin_like subfamily

Probab=93.92  E-value=0.0096  Score=55.22  Aligned_cols=20  Identities=30%  Similarity=0.506  Sum_probs=18.0

Q ss_pred             chhHHHHHhhhcccccccCC
Q psy2949         106 GKIQHEILHSLGFWHEHTRP  125 (367)
Q Consensus       106 g~i~HEigHALG~~HEh~rp  125 (367)
                      .|++||+||.|||+|.++--
T Consensus       139 ~t~~HEvGH~lGL~HtF~~~  158 (225)
T cd04275         139 DTATHEVGHWLGLYHTFQGG  158 (225)
T ss_pred             ceeEEeccceeeeeeeecCC
Confidence            69999999999999999753

The pregnancy-associated plasma protein A (PAPP-A or pappalysin-1) cleaves insulin-like growth factor-binding proteins 4 and 5, thereby promoting cell growth by releasing bound growth factor. This model includes pappalysins and related metalloprotease domains from all three kingdoms of life. The three-dimensional structure of an archaeal representative, ulilysin, has been solved.

>cd00041 CUB CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast

Probab=93.61  E-value=0.074  Score=42.37  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=27.0

Q ss_pred             cccc-cCCCCCCCCCCCCCCCCcEEEEcccCCCccccc
Q psy2949         305 QGFY-STSGPIPDLGYLPTGSGWFYKIGGPSDDRKIMD  341 (367)
Q Consensus       305 ~g~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~r~~~~  341 (367)
                      .|.+ +|++|.+    ++.+.+|.|.|.+|.++|+.+-
T Consensus        10 ~g~i~Sp~~p~~----~~~~~~C~w~i~~~~g~~i~l~   43 (113)
T cd00041          10 SGTISSPNYPNN----YPNNLNCVWTIEAPPGYRIRLT   43 (113)
T ss_pred             CeEEECCCCCCC----CCCCCcEEEEEEcCCCCEEEEE
Confidence            4555 8888876    7788999999999999988764

>COG1913 Predicted Zn-dependent proteases [General function prediction only]

Probab=93.31  E-value=0.035  Score=48.97  Aligned_cols=18  Identities=33%  Similarity=0.468  Sum_probs=15.2

Q ss_pred             chhHHHHHhhhccccccc
Q psy2949         106 GKIQHEILHSLGFWHEHT  123 (367)
Q Consensus       106 g~i~HEigHALG~~HEh~  123 (367)
                      --++||+||++||.|=-+
T Consensus       126 KEv~HElGH~~GL~HC~N  143 (181)
T COG1913         126 KEVLHELGHLLGLSHCPN  143 (181)
T ss_pred             HHHHHHhhhhcCcccCCC
Confidence            358999999999999654

>cd04269 ZnMc_adamalysin_II_like Zinc-dependent metalloprotease; adamalysin_II_like subfamily

Probab=93.20  E-value=0.039  Score=49.56  Aligned_cols=19  Identities=32%  Similarity=0.519  Sum_probs=16.7

Q ss_pred             cchhHHHHHhhhccccccc
Q psy2949         105 KGKIQHEILHSLGFWHEHT  123 (367)
Q Consensus       105 ~g~i~HEigHALG~~HEh~  123 (367)
                      ..+++|||||.||+.|...
T Consensus       132 a~~~AHElGH~lG~~HD~~  150 (194)
T cd04269         132 AVTMAHELGHNLGMEHDDG  150 (194)
T ss_pred             HHHHHHHHHhhcCCCcCCC
Confidence            3799999999999999864

Adamalysin II is a snake venom zinc endopeptidase. This subfamily contains other snake venom metalloproteinases, as well as membrane-anchored metalloproteases belonging to the ADAM family. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions.

>cd04272 ZnMc_salivary_gland_MPs Zinc-dependent metalloprotease, salivary_gland_MPs

Probab=93.04  E-value=0.064  Score=49.34  Aligned_cols=20  Identities=30%  Similarity=0.388  Sum_probs=17.4

Q ss_pred             cchhHHHHHhhhcccccccC
Q psy2949         105 KGKIQHEILHSLGFWHEHTR  124 (367)
Q Consensus       105 ~g~i~HEigHALG~~HEh~r  124 (367)
                      ..+++||+||.||+.|....
T Consensus       146 ~~~~AHElGH~lG~~HD~~~  165 (220)
T cd04272         146 VYTMTHELAHLLGAPHDGSP  165 (220)
T ss_pred             HHHHHHHHHHHhCCCCCCCC
Confidence            47999999999999998654

Metalloproteases secreted by the salivary glands of arthropods.

>TIGR03296 M6dom_TIGR03296 M6 family metalloprotease domain

Probab=92.95  E-value=0.19  Score=48.30  Aligned_cols=19  Identities=37%  Similarity=0.354  Sum_probs=16.2

Q ss_pred             ccchhHHHHHhhhcccccc
Q psy2949         104 LKGKIQHEILHSLGFWHEH  122 (367)
Q Consensus       104 ~~g~i~HEigHALG~~HEh  122 (367)
                      ..|+++||+||+|||.+.-
T Consensus       165 ~igv~~HE~gH~lGLPDlY  183 (286)
T TIGR03296       165 GVGVIAHELGHDLGLPDLY  183 (286)
T ss_pred             ceeeeehhhhcccCCCccc
Confidence            3599999999999987655

This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than Pfam model pfam05547.

>PF00431 CUB: CUB domain CUB domain entry Spermadhesins family entry Link to schematic domain picture by Peer Bork

Probab=92.40  E-value=0.058  Score=42.83  Aligned_cols=34  Identities=24%  Similarity=0.355  Sum_probs=26.0

Q ss_pred             ccccc-cCCCCCCCCCCCCCCCCcEEEEcccCCCccccc
Q psy2949         304 IQGFY-STSGPIPDLGYLPTGSGWFYKIGGPSDDRKIMD  341 (367)
Q Consensus       304 ~~g~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~r~~~~  341 (367)
                      ..|.+ +|++|.+    ++...+|.|.|.+|.+.+|.+-
T Consensus         8 ~~g~i~Sp~yp~~----y~~~~~C~w~i~~~~~~~I~l~   42 (110)
T PF00431_consen    8 NSGIISSPNYPSN----YPSNSDCTWTITAPPGHRIRLT   42 (110)
T ss_dssp             SEEEEESTTTTS-----SSSSEEEEEEEE-STTEEEEEE
T ss_pred             CeEEEECCCCCCC----CCCCCcEeEEEEecccceeeec
Confidence            45555 8888876    7888999999999999987654

; InterPro: IPR000859 The CUB domain (for complement C1r/C1s, Uegf, Bmp1) is a structural motif of approximately 110 residues found almost exclusively in extracellular and plasma membrane-associated proteins, many of which are developmentally regulated [, ]. These proteins are involved in a diverse range of functions, including complement activation, developmental patterning, tissue repair, axon guidance and angiogenesis, cell signalling, fertilisation, haemostasis, inflammation, neurotransmission, receptor-mediated endocytosis, and tumour suppression [, ]. Many CUB-containing proteins are peptidases belonging to MEROPS peptidase families M12A (astacin) and S1A (chymotrypsin). Proteins containing a CUB domain include: Mammalian complement subcomponents C1s/C1r, which form the calcium-dependent complex C1, the first component of the classical pathway of the complement system. Cricetidae sp. (Hamster) serine protease Casp, which degrades type I and IV collagen and fibronectin in the presence of calcium. Mammalian complement-activating component of Ra-reactive factor (RARF), a protease that cleaves the C4 component of complement. Vertebrate enteropeptidase (3.4.21.9 from EC), a type II membrane protein of the intestinal brush border, which activates trypsinogen. Vertebrate bone morphogenic protein 1 (BMP-1), a protein which induces cartilage and bone formation and expresses metalloendopeptidase activity. Sea urchin blastula proteins BP10 and SpAN. Caenorhabditis elegans hypothetical proteins F42A10.8 and R151.5. Neuropilin (A5 antigen), a calcium-independent cell adhesion molecule that functions during the formation of certain neuronal circuits. Fibropellins I and III from Strongylocentrotus purpuratus (Purple sea urchin). Mammalian hyaluronate-binding protein TSG-6 (or PS4), a serum and growth factor induced protein. Mammalian spermadhesins. Xenopus laevis embryonic protein UVS.2, which is expressed during dorsoanterior development. Several of the above proteins consist of a catalytic domain together with several CUB domains interspersed by calcium-binding EGF domains. Some CUB domains appear to be involved in oligomerisation and/or recognition of substrates and binding partners. For example, in the complement proteases, the CUB domains mediate dimerisation and binding to collagen-like regions of target proteins (e.g. C1q for C1r/C1s). The structure of CUB domains consists of a beta-sandwich with a jelly-roll fold. Almost all CUB domains contain four conserved cysteines that probably form two disulphide bridges (C1-C2, C3-C4). The CUB1 domains of C1s and Map19 have calcium-binding sites [].; PDB: 1SFP_A 3KQ4_B 2WNO_A 2QQK_A 2QQL_A 2QQO_B 2QQM_A 3POJ_A 3POB_A 3POG_B ....

>cd04271 ZnMc_ADAM_fungal Zinc-dependent metalloprotease, ADAM_fungal subgroup

Probab=92.16  E-value=0.053  Score=50.37  Aligned_cols=17  Identities=35%  Similarity=0.509  Sum_probs=15.3

Q ss_pred             chhHHHHHhhhcccccc
Q psy2949         106 GKIQHEILHSLGFWHEH  122 (367)
Q Consensus       106 g~i~HEigHALG~~HEh  122 (367)
                      .+++|||||.||+.|--
T Consensus       147 ~t~AHElGHnLGm~HD~  163 (228)
T cd04271         147 QVFAHEIGHTFGAVHDC  163 (228)
T ss_pred             eehhhhhhhhcCCCCCC
Confidence            48999999999999864

The adamalysin_like or ADAM (A Disintegrin And Metalloprotease) family of metalloproteases are integral membrane proteases acting on a variety of extracellular targets. They are involved in shedding soluble peptides or proteins from the cell surface. This subfamily contains fungal ADAMs, whose precise function has yet to be determined.

>PRK13267 archaemetzincin-like protein; Reviewed

Probab=91.96  E-value=0.073  Score=47.61  Aligned_cols=15  Identities=40%  Similarity=0.734  Sum_probs=13.5

Q ss_pred             chhHHHHHhhhcccc
Q psy2949         106 GKIQHEILHSLGFWH  120 (367)
Q Consensus       106 g~i~HEigHALG~~H  120 (367)
                      -.++||+||.||+.|
T Consensus       127 k~~~HElGH~lGL~H  141 (179)
T PRK13267        127 KEVTHELGHTLGLEH  141 (179)
T ss_pred             HHHHHHHHHHcCCcc
Confidence            358999999999999

>cd04270 ZnMc_TACE_like Zinc-dependent metalloprotease; TACE_like subfamily

Probab=91.95  E-value=0.072  Score=49.99  Aligned_cols=17  Identities=29%  Similarity=0.323  Sum_probs=15.0

Q ss_pred             chhHHHHHhhhcccccc
Q psy2949         106 GKIQHEILHSLGFWHEH  122 (367)
Q Consensus       106 g~i~HEigHALG~~HEh  122 (367)
                      .+++|||||.||..|--
T Consensus       169 ~t~AHElGHnlGm~HD~  185 (244)
T cd04270         169 LVTAHELGHNFGSPHDP  185 (244)
T ss_pred             HHHHHHHHHhcCCCCCC
Confidence            68999999999998854

TACE, the tumor-necrosis factor-alpha converting enzyme, releases soluble TNF-alpha from transmembrane pro-TNF-alpha.

>PF07998 Peptidase_M54: Peptidase family M54; InterPro: IPR012962 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.79  E-value=0.077  Score=48.01  Aligned_cols=17  Identities=29%  Similarity=0.364  Sum_probs=11.6

Q ss_pred             chhHHHHHhhhcccccc
Q psy2949         106 GKIQHEILHSLGFWHEH  122 (367)
Q Consensus       106 g~i~HEigHALG~~HEh  122 (367)
                      -.++||+||++||.|=.
T Consensus       147 Kea~HElGH~~GL~HC~  163 (194)
T PF07998_consen  147 KEAVHELGHLFGLDHCE  163 (194)
T ss_dssp             HHHHHHHHHHTT----S
T ss_pred             HHHHHHHHHHcCCcCCC
Confidence            57999999999999854

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This entry represents zinc-dependent peptidases belonging to the MEROPS peptidase family M54, more commonly known as the archaemetzincins. The family has a wide taxonomic distribution, being found in archaea, bacteria and eukaryotes. Two human homologues have been characterised []. ; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding; PDB: 3LMC_A 2XHQ_A 2X7M_A.

>cd04273 ZnMc_ADAMTS_like Zinc-dependent metalloprotease, ADAMTS_like subgroup

Probab=91.68  E-value=0.041  Score=50.16  Aligned_cols=19  Identities=37%  Similarity=0.454  Sum_probs=17.0

Q ss_pred             cchhHHHHHhhhccccccc
Q psy2949         105 KGKIQHEILHSLGFWHEHT  123 (367)
Q Consensus       105 ~g~i~HEigHALG~~HEh~  123 (367)
                      ..+++|||||.||+.|...
T Consensus       141 a~~~aHElGH~LG~~HD~~  159 (207)
T cd04273         141 AFTIAHELGHVLGMPHDGD  159 (207)
T ss_pred             EEeeeeechhhcCCCCCCC
Confidence            4789999999999999865

ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that combine ADAM-like metalloproteinases with thrombospondin type-1 repeats. ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) proteinases are inhibited by TIMPs (tissue inhibitors of metalloproteinases), and they play roles in coagulation, angiogenesis, development and progression of arthritis. They hydrolyze the von Willebrand factor precursor and various components of the extracellular matrix.

>PF01421 Reprolysin: Reprolysin (M12B) family zinc metalloprotease This Prosite motif covers only the active site

Probab=90.18  E-value=0.14  Score=46.26  Aligned_cols=18  Identities=39%  Similarity=0.516  Sum_probs=13.5

Q ss_pred             chhHHHHHhhhccccccc
Q psy2949         106 GKIQHEILHSLGFWHEHT  123 (367)
Q Consensus       106 g~i~HEigHALG~~HEh~  123 (367)
                      .+++|||||.||+.|...
T Consensus       133 ~~~AHelGH~lGm~HD~~  150 (199)
T PF01421_consen  133 VIIAHELGHNLGMPHDGD  150 (199)
T ss_dssp             HHHHHHHHHHTT---TTT
T ss_pred             HHHHHHHHHhcCCCCCCC
Confidence            688999999999999876

; InterPro: IPR001590 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M12, subfamily M12B (adamalysin family, clan (MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. The adamalysins are zinc dependent endopeptidases found in snake venom. There are some mammalian proteins such as P78325 from SWISSPROT, and fertilin Q28472 from SWISSPROT. Fertilin and closely related proteins appear to not have some active site residues and may not be active enzymes. CD156 (also called ADAM8 (3.4.24 from EC) or MS2 human) has been implicated in extravasation of leukocytes. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2E3X_A 2W15_A 2W14_A 2W13_A 2W12_A 1ND1_A 3K7L_A 2DW2_A 2DW0_B 2DW1_A ....

>PF11350 DUF3152: Protein of unknown function (DUF3152); InterPro: IPR022603 This entry represents Actinobacteria proteins of unknown function

Probab=89.25  E-value=0.15  Score=46.05  Aligned_cols=98  Identities=20%  Similarity=0.255  Sum_probs=53.3

Q ss_pred             CeeEEEEcCC-CC--C-----HHHHHHHHHHHHH---HHHcCCcEEEEcCC-CCce-EEEecC---CCCcc-CC-CCC--
Q psy2949          27 KTVYYNFEDS-EF--T-----IYEKTLVENAIQD---LRMHTCVRFVPRTN-QDTY-LRFRNT---GFGCA-SP-VGY--   86 (367)
Q Consensus        27 ~~VpY~~~~~-~~--~-----~~~~~~I~~A~~~---w~~~tci~F~~~~~-~~~~-I~i~~~---~~gc~-S~-vG~--   86 (367)
                      .++.|.++-+ ++  +     ...-..|...+..   |...--++|+.+.. ..++ |.+...   ..-|. .. -|.  
T Consensus        29 ~~~rY~VeVE~Gi~~~~~gg~~~fA~~V~~tL~DpRgW~~~g~~~F~rV~~~~~Df~I~Lasp~T~~~lC~g~~~~~e~S  108 (203)
T PF11350_consen   29 RLYRYRVEVEDGIDVDAYGGDDAFAAMVDATLADPRGWTADGRVRFQRVDSGAPDFRISLASPGTTDRLCAGLDTSGETS  108 (203)
T ss_pred             ceEEEEEEEccCcCCcccccHHHHHHHHHHHhcCCCCCCcCCCEEEEECCCCCCCEEEEECCcchhhhhccCcCcCceeE
Confidence            4688888522 22  1     3455556555544   88888899999983 3344 333322   34461 11 111  


Q ss_pred             --C--CCCccccc--ccCCCcc-------cccchhHHHHHhhhcccccccC
Q psy2949          87 --F--PIGTGIDI--FLGGRVC-------FLKGKIQHEILHSLGFWHEHTR  124 (367)
Q Consensus        87 --~--~g~q~i~~--~~l~~~c-------~~~g~i~HEigHALG~~HEh~r  124 (367)
                        .  ++.-.||.  +..+..-       ...-+|-||.||+||..||-.-
T Consensus       109 C~~~~g~~VvIN~~RWv~Ga~~f~gdl~~YRqYvINHEVGH~LGh~H~~Cp  159 (203)
T PF11350_consen  109 CRNPAGGRVVINLARWVRGAPAFGGDLASYRQYVINHEVGHALGHGHEPCP  159 (203)
T ss_pred             eecCCCCeEEEehHHhhccCcccCCcHHHHHHHhhhhhhhhhcccCCCcCC
Confidence              1  23444551  1111111       1125899999999999887653

Some are annotated as membrane proteins, however this cannot be confirmed.

>PF10462 Peptidase_M66: Peptidase M66; InterPro: IPR019503 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=89.03  E-value=0.17  Score=48.87  Aligned_cols=16  Identities=31%  Similarity=0.575  Sum_probs=12.8

Q ss_pred             chhHHHHHhhhccccc
Q psy2949         106 GKIQHEILHSLGFWHE  121 (367)
Q Consensus       106 g~i~HEigHALG~~HE  121 (367)
                      ++.+||+||++||.|-
T Consensus       195 ~~f~HE~GH~~GL~H~  210 (305)
T PF10462_consen  195 NEFSHELGHNFGLGHY  210 (305)
T ss_dssp             HHHHHHHHHTTT--SS
T ss_pred             ceeehhhhhhcCCCCC
Confidence            7899999999999993

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This is a family of metallopeptidases belonging to MEROPS peptidase family M66 (StcE peptidase, clan MA). The StcE peptidase is a virulence factor found in Shiga toxigenic Escherichia coli strains. StcE peptidase cleaves C1 esterase inhibitor []. The SwissProt proteins in this entry have been name "Dictomallein". ; GO: 0004222 metalloendopeptidase activity; PDB: 3UJZ_A.

>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins

Probab=86.81  E-value=0.58  Score=34.09  Aligned_cols=29  Identities=31%  Similarity=0.511  Sum_probs=25.7

Q ss_pred             cchhHHHHHhhhcccccccCCCCCcceEE
Q psy2949         105 KGKIQHEILHSLGFWHEHTRPDRDQFVRV  133 (367)
Q Consensus       105 ~g~i~HEigHALG~~HEh~rpDRD~yv~I  133 (367)
                      ...++|++.+.+||.|+..-...+.+|.|
T Consensus        30 eR~~vH~lA~~~gL~s~S~G~g~~R~v~v   58 (60)
T cd02641          30 DRLLVHELAEELGLRHESTGEGSDRVITV   58 (60)
T ss_pred             HHHHHHHHHHHcCCceEeeCCCCceEEEe
Confidence            37899999999999999988888888776

Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.

>PTZ00337 surface protease GP63; Provisional

Probab=86.06  E-value=0.25  Score=51.78  Aligned_cols=28  Identities=25%  Similarity=0.081  Sum_probs=19.1

Q ss_pred             cccccCCCcccccchhHHHHHhhhcccc
Q psy2949          93 IDIFLGGRVCFLKGKIQHEILHSLGFWH  120 (367)
Q Consensus        93 i~~~~l~~~c~~~g~i~HEigHALG~~H  120 (367)
                      ++|..+...-....+++|||.|||||-.
T Consensus       218 ~np~~i~~~~~~~~v~~HEi~HALGFs~  245 (567)
T PTZ00337        218 FDPRQIAVTNGDVRVAAHELGHALGFVR  245 (567)
T ss_pred             ECHHHccchhHHHHHHHHHHHHHHccCH
Confidence            3343343333345899999999999944

>PF12044 Metallopep: Putative peptidase family; InterPro: IPR021917 This family of proteins is functionally uncharacterised

Probab=85.62  E-value=0.34  Score=48.95  Aligned_cols=18  Identities=39%  Similarity=0.549  Sum_probs=16.3

Q ss_pred             chhHHHHHhhhccccccc
Q psy2949         106 GKIQHEILHSLGFWHEHT  123 (367)
Q Consensus       106 g~i~HEigHALG~~HEh~  123 (367)
                      |.++||+||+||+.|.-+
T Consensus       318 GA~lHEiGH~fg~pH~~~  335 (423)
T PF12044_consen  318 GAFLHEIGHLFGCPHQED  335 (423)
T ss_pred             HHHHHHHHHhcCCCCCCC
Confidence            789999999999999764

However, it does contain an HEXXH motif characteristic of metallopeptidases. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 625 to 773 amino acids in length.

>PF01457 Peptidase_M8: Leishmanolysin This Prosite motif covers only the active site

Probab=84.22  E-value=0.46  Score=49.55  Aligned_cols=17  Identities=41%  Similarity=0.604  Sum_probs=14.0

Q ss_pred             cchhHHHHHhhhccccc
Q psy2949         105 KGKIQHEILHSLGFWHE  121 (367)
Q Consensus       105 ~g~i~HEigHALG~~HE  121 (367)
                      ..+++||++|||||--.
T Consensus       211 ~~~~~HEi~HaLGFs~~  227 (521)
T PF01457_consen  211 FRTVIHEIAHALGFSSS  227 (521)
T ss_dssp             HHHHHHHHHHHTT-SHH
T ss_pred             cceeeeeeeeeeeeccc
Confidence            37999999999999764

This is family M8 in the peptidase classification. ; InterPro: IPR001577 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M8 (leishmanolysin family, clan MA(M)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. Leishmanolysin is an enzyme found in the eukaryotes including Leishmania and related parasitic protozoa []. The endopeptidase is the most abundant protein on the cell surface during the promastigote stage of the parasite, and is attached to the membrane by a glycosylphosphatidylinositol anchor []. In the amastigote form, the parasite lives in lysosomes of host macrophages, producing a form of the protease that has an acidic pH optimum []. This differs from most other metalloproteases and may be an adaptation to the environment in which the organism survives [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis, 0007155 cell adhesion, 0016020 membrane; PDB: 1LML_A.

>cd06459 M3B_Oligoendopeptidase_F Peptidase family M3B Oligopeptidase F (PepF; Pz-peptidase B; EC 3

Probab=82.47  E-value=1.8  Score=43.35  Aligned_cols=20  Identities=15%  Similarity=-0.069  Sum_probs=14.6

Q ss_pred             CCCcccccchhHHHHHhhhc
Q psy2949          98 GGRVCFLKGKIQHEILHSLG  117 (367)
Q Consensus        98 l~~~c~~~g~i~HEigHALG  117 (367)
                      +.......-|++||+|||+=
T Consensus       216 ~~~~~~~v~tl~HE~GHa~h  235 (427)
T cd06459         216 FNGTLDDVFTLAHELGHAFH  235 (427)
T ss_pred             CCCChhhHHHHHHHhhHHHH
Confidence            34445556899999999974

4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the PepF Bacillus amyloliquefaciens oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over expressed from a multicopy plasmid.

>KOG4525|consensus

Probab=81.89  E-value=0.57  Score=46.93  Aligned_cols=18  Identities=39%  Similarity=0.615  Sum_probs=16.2

Q ss_pred             chhHHHHHhhhccccccc
Q psy2949         106 GKIQHEILHSLGFWHEHT  123 (367)
Q Consensus       106 g~i~HEigHALG~~HEh~  123 (367)
                      |.++|||||.||+.|.-.
T Consensus       303 GA~~HElGH~lgcpHq~~  320 (614)
T KOG4525|consen  303 GAVCHELGHCLGCPHQSE  320 (614)
T ss_pred             HHHHHHhhhccCCCCCCC
Confidence            789999999999999753

>TIGR00181 pepF oligoendopeptidase F

Probab=81.84  E-value=1.9  Score=45.66  Aligned_cols=74  Identities=11%  Similarity=0.077  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEEecC----CCC-ccCCCCCCCCCcccccccCCCcccccchhHHHHHh
Q psy2949          40 IYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNT----GFG-CASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILH  114 (367)
Q Consensus        40 ~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i~~~----~~g-c~S~vG~~~g~q~i~~~~l~~~c~~~g~i~HEigH  114 (367)
                      ++.++.|.+|++.+... ...++...-...||-+..+    +++ |++..+ ..+--.+|   +...-...-|++|||||
T Consensus       314 ~~a~~~v~~~~~~~g~~-~~~~~~~~~~~~wiD~~~r~gK~~Ga~~~~~~~-~~p~il~N---~~~~~~dv~TLaHElGH  388 (591)
T TIGR00181       314 EEAKELILKSLEPLGEE-YIKILKRAFNERWVDYAENKGKRSGAYSIGGYK-VKPYILMN---WDGTLNSVFTLAHELGH  388 (591)
T ss_pred             HHHHHHHHHHHhccCHH-HHHHHHHHhhCCCeeecCCCCCCCCcccCCCCC-CCCeEEEe---cCCCcchHHHHHHHhhh
Confidence            34566677787543221 1111111112246665432    222 444433 22222233   44444456899999999


Q ss_pred             hhcc
Q psy2949         115 SLGF  118 (367)
Q Consensus       115 ALG~  118 (367)
                      |+=.
T Consensus       389 a~H~  392 (591)
T TIGR00181       389 SMHS  392 (591)
T ss_pred             HHHH
Confidence            9743

This family represents the oligoendopeptidase F clade of the family of larger M3 or thimet (for thiol-dependent metallopeptidase) oligopeptidase family. Lactococcus lactis PepF hydrolyzed peptides of 7 and 17 amino acids with fairly broad specificity. The homolog of lactococcal PepF in group B Streptococcus was named PepB (PubMed:8757883), with the name difference reflecting a difference in species of origin rather activity; substrate profiles were quite similar. Differences in substrate specificity should be expected in other species. The gene is duplicated in Lactococcus lactis on the plasmid that bears it. A shortened second copy is found in Bacillus subtilis.

>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised

Probab=80.96  E-value=1.1  Score=43.65  Aligned_cols=75  Identities=17%  Similarity=0.020  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHHc-CCcEEEEcCCCCceEEEecCCCCccCCCCCCC------CCcccccccCCCcccccchhHHHH
Q psy2949          40 IYEKTLVENAIQDLRMH-TCVRFVPRTNQDTYLRFRNTGFGCASPVGYFP------IGTGIDIFLGGRVCFLKGKIQHEI  112 (367)
Q Consensus        40 ~~~~~~I~~A~~~w~~~-tci~F~~~~~~~~~I~i~~~~~gc~S~vG~~~------g~q~i~~~~l~~~c~~~g~i~HEi  112 (367)
                      .+..+.+++|++.+.+. ..+.....  ...-+.+    +.-.|++|..|      ++-.+|.  .-.......|++||+
T Consensus       133 ~~i~~~~~~~y~~l~~~~p~l~~~~~--~~K~~l~----S~~~s~~g~~Gyy~PFT~EA~vN~--~~p~~~~P~T~~HEl  204 (318)
T PF12725_consen  133 EEIFEEAREGYENLAERYPFLSGYYP--SPKPSLF----SRLMSYMGISGYYNPFTGEANVNT--DLPPYSLPFTICHEL  204 (318)
T ss_pred             HHHHHHHHHHHHHHHHhCCccCCCCC--CCcHhhc----cHHHHHccCceEEcCCcceeecCC--CCCcccccHHHHHHH
Confidence            56677788888888763 33322211  1111111    22234444432      3333441  112334458999999


Q ss_pred             Hhhhcccccc
Q psy2949         113 LHSLGFWHEH  122 (367)
Q Consensus       113 gHALG~~HEh  122 (367)
                      +|-+||..|.
T Consensus       205 AHq~G~a~E~  214 (318)
T PF12725_consen  205 AHQLGFASED  214 (318)
T ss_pred             HHHhCCCCHH
Confidence            9999999996

Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.

>PF05547 Peptidase_M6: Immune inhibitor A peptidase M6; InterPro: IPR008757 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=80.07  E-value=0.37  Score=51.29  Aligned_cols=16  Identities=38%  Similarity=0.407  Sum_probs=14.2

Q ss_pred             ccchhHHHHHhhhccc
Q psy2949         104 LKGKIQHEILHSLGFW  119 (367)
Q Consensus       104 ~~g~i~HEigHALG~~  119 (367)
                      ..|+++|||||.|||.
T Consensus       221 giGVfaHEfGH~LGLP  236 (645)
T PF05547_consen  221 GIGVFAHEFGHDLGLP  236 (645)
T ss_pred             ceEEEEeeccccCCCC
Confidence            4699999999999984

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M6 (immune inhibitor A family, clan MA(M)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. InhA of Bacillus thuringiensis (an entomopathogenic bacterium) specifically cleaves antibacterial peptides produced by insect hosts []. B. thuringiensis is highly resistant to the insect immune system due to its production of two factors, inhibitor A (InhA or InA) and inhibitor B (InhB or InB), which selectively block the humoral defence system developed by insects against Escherichia coli and Bacillus cereus []. B. thuringiensis is especially resistant to cecropins and attacins, which are the main classes of inducible antibacterial peptides in various lepidopterans and dipterans [], []. InhA has been shown to specifically hydrolyze cecropins and attacins in the immune hemolymph of Hyalophora cecropia (Cecropia moth) in vitro []. However, it has been suggested that the role of InhA in resistance to the humoral defence system is not consistent with the time course of InhA production []. B. thuringiensis has two proteins belonging to this group (InhA and InhA2), and it has been shown that InhA2 has a vital role in virulence when the host is infected via the oral route []. The B. cereus member has been found as an exosporium component from endospores []. B. thuringiensis InhA is induced at the onset of sporulation and is regulated by Spo0A and AbrB []. Vibrio cholerae PrtV is thought to be encoded in the pathogenicity island []. However, PrtV mutants did not exhibit a reduced virulence phenotype, and thus PrtV is not an indispensable virulence factor []. Annotation note: due to the presence of PKD repeats in some of the members of this group (e.g., V. cholerae VCA0223), spurious similarity hits may appear (involving unrelated proteins), which may lead to the erroneous transfer of functional annotations and protein names. Also, please note that related Bacillus subtilis Bacillopeptidase F (Bpr or Bpf) contains two different protease domains: N-terminal IPR000209 from INTERPRO (peptidase S8, subtilase, a subtilisin-like serine protease) and this C-terminal domain (peptidase M6), which may also complicate annotation.; GO: 0008233 peptidase activity, 0006508 proteolysis

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	367
3edh_A	201	Crystal Structure Of Bone Morphogenetic Protein 1 P		4e-35
3edh_A	201	Crystal Structure Of Bone Morphogenetic Protein 1 P		5e-09
3edg_A	202	Crystal Structure Of Bone Morphogenetic Protein 1 P		4e-35
3edg_A	202	Crystal Structure Of Bone Morphogenetic Protein 1 P		5e-09
3lqb_A	199	Crystal Structure Of The Hatching Enzyme Zhe1 From		6e-34
3lqb_A	199	Crystal Structure Of The Hatching Enzyme Zhe1 From		5e-08
3edi_A	201	Crystal Structure Of Tolloid-Like Protease 1 (Tll-1		1e-33
3edi_A	201	Crystal Structure Of Tolloid-Like Protease 1 (Tll-1		5e-08
4gwm_A	592	Crystal Structure Of Human Promeprin Beta Length =		2e-32
4gwm_A	592	Crystal Structure Of Human Promeprin Beta Length =		5e-09
4gwn_A	553	Crystal Structure Of Human Mature Meprin Beta Lengt		1e-30
4gwn_A	553	Crystal Structure Of Human Mature Meprin Beta Lengt		5e-09
1ast_A	200	Structure Of Astacin And Implications For Activatio		6e-25
3lq0_A	235	Zymogen Structure Of Crayfish Astacin Metallopeptid		8e-25

>pdb|3EDH|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1 Protease Domain In Complex With Partially Bound Dmso Length = 201

Iteration: 1
 Score =  145 bits (365), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 78/196 (39%), Positives = 112/196 (57%), Gaps = 5/196 (2%)
Query: 22  QLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCA 81
           ++WPD  + +      FT  ++ +   A++    HTCV F+ RT++D+Y+ F     GC 
Sbjct: 8   RVWPDGVIPFVI-GGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCC 66
Query: 82  SPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPG 141
           S VG    G G      G+ C   G + HE+ H +GFWHEHTRPDRD+ V ++RENI PG
Sbjct: 67  SYVGRR--GGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPG 124
Query: 142 HEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYP--GAEDTMGQRDA 199
            E+N  +     V + G  YD+ SIMHY+   FS+     TIVP Y   G +  +GQR  
Sbjct: 125 QEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTR 184
Query: 200 MSRVDLAKLNRLYKCP 215
           +S+ D+A+  +LYKCP
Sbjct: 185 LSKGDIAQARKLYKCP 200

>pdb|3EDH|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1 Protease Domain In Complex With Partially Bound Dmso Length = 201

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 216 KNYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYP--GAEDT 273
           +N   G E+N  +     V +    YD+ SIMHY+   FS+     TIVP Y   G +  
Sbjct: 119 ENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPP 178
Query: 274 MGQRDAMSRVDLAKLNRLYKCP 295
           +GQR  +S+ D+A+  +LYKCP
Sbjct: 179 IGQRTRLSKGDIAQARKLYKCP 200

>pdb|3EDG|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1 Protease Domain Length = 202

Iteration: 1
 Score =  145 bits (365), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 78/196 (39%), Positives = 112/196 (57%), Gaps = 5/196 (2%)
Query: 22  QLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCA 81
           ++WPD  + +      FT  ++ +   A++    HTCV F+ RT++D+Y+ F     GC 
Sbjct: 9   RVWPDGVIPFVI-GGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCC 67
Query: 82  SPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPG 141
           S VG    G G      G+ C   G + HE+ H +GFWHEHTRPDRD+ V ++RENI PG
Sbjct: 68  SYVGRR--GGGPQAISIGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPG 125
Query: 142 HEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYP--GAEDTMGQRDA 199
            E+N  +     V + G  YD+ SIMHY+   FS+     TIVP Y   G +  +GQR  
Sbjct: 126 QEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTR 185
Query: 200 MSRVDLAKLNRLYKCP 215
           +S+ D+A+  +LYKCP
Sbjct: 186 LSKGDIAQARKLYKCP 201

>pdb|3EDG|A Chain A, Crystal Structure Of Bone Morphogenetic Protein 1 Protease Domain Length = 202

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 2/82 (2%)
Query: 216 KNYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYP--GAEDT 273
           +N   G E+N  +     V +    YD+ SIMHY+   FS+     TIVP Y   G +  
Sbjct: 120 ENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPP 179
Query: 274 MGQRDAMSRVDLAKLNRLYKCP 295
           +GQR  +S+ D+A+  +LYKCP
Sbjct: 180 IGQRTRLSKGDIAQARKLYKCP 201

>pdb|3LQB|A Chain A, Crystal Structure Of The Hatching Enzyme Zhe1 From The Zebrafish Danio Rerio Length = 199

Iteration: 1
 Score =  141 bits (356), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 73/178 (41%), Positives = 105/178 (58%), Gaps = 7/178 (3%)
Query: 37  EFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCASPVGYFPIGTGIDIF 96
           EF+I +K+++ NAI      TC+RFVPR+ Q  YL   N   GC S +G    G    + 
Sbjct: 29  EFSINDKSVIANAISIFHAQTCIRFVPRSIQADYLSIENKD-GCYSAIG--RTGGKQVVS 85
Query: 97  LGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRT 156
           L  + C   G  QHE+ H+LGF+HE +R DRDQ+VR+   NI PG  +N  ++ T +  T
Sbjct: 86  LNRKGCVYSGIAQHELNHALGFYHEQSRSDRDQYVRINWNNISPGMAYNFLKQKTNNQNT 145
Query: 157 FGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKC 214
              PYDYGS+MHY   AF+     +TI P+ P     +GQR  +S++D+ ++N+LY C
Sbjct: 146 ---PYDYGSLMHYGKTAFAIQPGLETITPI-PDENVQIGQRQGLSKIDILRINKLYGC 199

>pdb|3LQB|A Chain A, Crystal Structure Of The Hatching Enzyme Zhe1 From The Zebrafish Danio Rerio Length = 199

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 4/78 (5%)
Query: 217 NYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQ 276
           N   G  +N  ++   +  T   PYDYGS+MHY   AF+     +TI P+ P     +GQ
Sbjct: 126 NISPGMAYNFLKQKTNNQNT---PYDYGSLMHYGKTAFAIQPGLETITPI-PDENVQIGQ 181
Query: 277 RDAMSRVDLAKLNRLYKC 294
           R  +S++D+ ++N+LY C
Sbjct: 182 RQGLSKIDILRINKLYGC 199

>pdb|3EDI|A Chain A, Crystal Structure Of Tolloid-Like Protease 1 (Tll-1) Protease Domain Length = 201

Iteration: 1
 Score =  140 bits (353), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 74/196 (37%), Positives = 110/196 (56%), Gaps = 5/196 (2%)
Query: 22  QLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCA 81
           ++WP   + Y      FT  ++ + + A++    HTCV F+ R+++++Y+ F     GC 
Sbjct: 8   RIWPGGVIPYVI-GGNFTGSQRAMFKQAMRHWEKHTCVTFIERSDEESYIVFTYRPCGCC 66
Query: 82  SPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPG 141
           S VG    G G      G+ C   G + HE+ H +GFWHEHTRPDRD  V ++RENI PG
Sbjct: 67  SYVGRR--GNGPQAISIGKNCDKFGIVVHELGHVIGFWHEHTRPDRDNHVTIIRENIQPG 124
Query: 142 HEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYP--GAEDTMGQRDA 199
            E+N  +   G V + G  YD+ SIMHY+   FS+     TI+P     G    +GQR  
Sbjct: 125 QEYNFLKMEPGEVNSLGERYDFDSIMHYARNTFSRGMFLDTILPSRDDNGIRPAIGQRTR 184
Query: 200 MSRVDLAKLNRLYKCP 215
           +S+ D+A+  +LY+CP
Sbjct: 185 LSKGDIAQARKLYRCP 200

>pdb|3EDI|A Chain A, Crystal Structure Of Tolloid-Like Protease 1 (Tll-1) Protease Domain Length = 201

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 216 KNYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYP--GAEDT 273
           +N   G E+N  +   G V +    YD+ SIMHY+   FS+     TI+P     G    
Sbjct: 119 ENIQPGQEYNFLKMEPGEVNSLGERYDFDSIMHYARNTFSRGMFLDTILPSRDDNGIRPA 178
Query: 274 MGQRDAMSRVDLAKLNRLYKCP 295
           +GQR  +S+ D+A+  +LY+CP
Sbjct: 179 IGQRTRLSKGDIAQARKLYRCP 200

>pdb|4GWM|A Chain A, Crystal Structure Of Human Promeprin Beta Length = 592

Iteration: 1
 Score =  136 bits (343), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/228 (37%), Positives = 119/228 (52%), Gaps = 9/228 (3%)
Query: 2   EGDILIPRERDSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRF 61
           EGDI + R +  RN ++ +   WP  T+ Y  EDS   +  K ++ NA +  R+ TC+ F
Sbjct: 28  EGDIRLDRAQ-IRNSIIGEKYRWP-HTIPYVLEDS-LEMNAKGVILNAFERYRLKTCIDF 84
Query: 62  VPRTNQDTYLRFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHE 121
            P   +  Y+     G GC S VG   +G   ++ +G   C     +QHE LH+LGFWHE
Sbjct: 85  KPWAGETNYISVFK-GSGCWSSVGNRRVGKQ-ELSIGAN-CDRIATVQHEFLHALGFWHE 141
Query: 122 HTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSK 181
            +R DRD +VR++ + I  G E N          +  +PYDY S+MHYS  AF ++G   
Sbjct: 142 QSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAF-QNGTEP 200
Query: 182 TIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKCPK--NYYQGHEFNLE 227
           TIV      ED +GQR   S  DL KLN+LY C    ++     F LE
Sbjct: 201 TIVTRISDFEDVIGQRMDFSDSDLLKLNQLYNCSSSLSFMDSCSFELE 248

>pdb|4GWM|A Chain A, Crystal Structure Of Human Promeprin Beta Length = 592

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 221 GHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAM 280
           G E N          + ++PYDY S+MHYS  AF ++G   TIV      ED +GQR   
Sbjct: 161 GREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAF-QNGTEPTIVTRISDFEDVIGQRMDF 219
Query: 281 SRVDLAKLNRLYKCPKN 297
           S  DL KLN+LY C  +
Sbjct: 220 SDSDLLKLNQLYNCSSS 236

>pdb|4GWN|A Chain A, Crystal Structure Of Human Mature Meprin Beta Length = 553

Iteration: 1
 Score =  130 bits (326), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/215 (36%), Positives = 111/215 (51%), Gaps = 8/215 (3%)
Query: 15  NLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFR 74
           N ++ +   WP  T+ Y  EDS   +  K ++ NA +  R+ TC+ F P   +  Y+   
Sbjct: 1   NSIIGEKYRWP-HTIPYVLEDS-LEMNAKGVILNAFERYRLKTCIDFKPWAGETNYISVF 58
Query: 75  NTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVL 134
             G GC S VG   +G   ++ +G   C     +QHE LH+LGFWHE +R DRD +VR++
Sbjct: 59  K-GSGCWSSVGNRRVGKQ-ELSIGAN-CDRIATVQHEFLHALGFWHEQSRSDRDDYVRIM 115
Query: 135 RENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTM 194
            + I  G E N          +  +PYDY S+MHYS  AF ++G   TIV      ED +
Sbjct: 116 WDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAF-QNGTEPTIVTRISDFEDVI 174
Query: 195 GQRDAMSRVDLAKLNRLYKCPK--NYYQGHEFNLE 227
           GQR   S  DL KLN+LY C    ++     F LE
Sbjct: 175 GQRMDFSDSDLLKLNQLYNCSSSLSFMDSCSFELE 209

>pdb|4GWN|A Chain A, Crystal Structure Of Human Mature Meprin Beta Length = 553

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 221 GHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAM 280
           G E N          + ++PYDY S+MHYS  AF ++G   TIV      ED +GQR   
Sbjct: 122 GREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAF-QNGTEPTIVTRISDFEDVIGQRMDF 180
Query: 281 SRVDLAKLNRLYKCPKN 297
           S  DL KLN+LY C  +
Sbjct: 181 SDSDLLKLNQLYNCSSS 197

>pdb|1AST|A Chain A, Structure Of Astacin And Implications For Activation Of Astacins And Zinc-Ligation Of Collagenases Length = 200

Iteration: 1
 Score =  111 bits (278), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 69/192 (35%), Positives = 101/192 (52%), Gaps = 8/192 (4%)
Query: 23  LWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCAS 82
           LW    + Y F  +  +  +++ + + +Q+L   TC+RFVPRT +  Y+    +G GC S
Sbjct: 9   LWSGGVIPYTF--AGVSGADQSAILSGMQELEEKTCIRFVPRTTESDYVEIFTSGSGCWS 66
Query: 83  PVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGH 142
            VG   I     + L    C   G I HE++H++GF+HEHTR DRD +V +  +N+ P  
Sbjct: 67  YVG--RISGAQQVSLQANGCVYHGTIIHELMHAIGFYHEHTRMDRDNYVTINYQNVDPSM 124
Query: 143 EFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFS-KDGVSKTIVPLYPGAEDTMGQRDA-M 200
             N +       R  G  Y Y SIMHY   +FS + GV +TIVPL  G + T     A M
Sbjct: 125 TSNFDIDTYS--RYVGEDYQYYSIMHYGKYSFSIQWGVLETIVPLQNGIDLTDPYDKAHM 182
Query: 201 SRVDLAKLNRLY 212
            + D  ++N LY
Sbjct: 183 LQTDANQINNLY 194

>pdb|3LQ0|A Chain A, Zymogen Structure Of Crayfish Astacin Metallopeptidase Length = 235

Iteration: 1
 Score =  110 bits (276), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 74/216 (34%), Positives = 109/216 (50%), Gaps = 11/216 (5%)
Query: 2   EGDILIPRERDSRNL---VLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTC 58
           EGDI +   R    +   +L    LW    + Y F  +  +  +++ + + +Q+L   TC
Sbjct: 19  EGDIKLRAGRQPARVGAAILGDEYLWSGGVIPYTF--AGVSGADQSAILSGMQELEEKTC 76
Query: 59  VRFVPRTNQDTYLRFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGF 118
           +RFVPRT +  Y+    +G GC S VG   I     + L    C   G I H ++H++GF
Sbjct: 77  IRFVPRTTESDYVEIFTSGSGCWSYVG--RISGAQQVSLQANGCVYHGTILHALMHAIGF 134
Query: 119 WHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFS-KD 177
           +HEHTR DRD +V +  +N+ P    N +       R  G  Y Y SIMHY   +FS + 
Sbjct: 135 YHEHTRMDRDNYVTINYQNVDPSMTSNFDIDTYS--RYVGEDYQYYSIMHYGKYSFSIQW 192
Query: 178 GVSKTIVPLYPGAEDTMGQRDA-MSRVDLAKLNRLY 212
           GV +TIVPL  G + T     A M + D  ++N LY
Sbjct: 193 GVLETIVPLQNGIDLTDPYDKAHMLQTDANQINNLY 228

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	367
3lq0_A	235	Proastacin; metallopeptidase, zymogen activation,	7e-80
3lq0_A	235	Proastacin; metallopeptidase, zymogen activation,	6e-21
3edh_A	201	Bone morphogenetic protein 1; vicinal disulfide, a	1e-78
3edh_A	201	Bone morphogenetic protein 1; vicinal disulfide, a	5e-25
3lqb_A	199	Hatching enzyme, LOC792177 protein; hydrolase, met	6e-71
3lqb_A	199	Hatching enzyme, LOC792177 protein; hydrolase, met	2e-21
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme, protease, Z disulfide bond, hydrolase, metal-binding, metalloprotease,; 1.45A {Astacus astacus} PDB: 1iab_A 1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A Length = 235

 Score =  243 bits (622), Expect = 7e-80
 Identities = 71/219 (32%), Positives = 105/219 (47%), Gaps = 11/219 (5%)

Query: 1   MEGDILIPRERDS---RNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHT 57
            EGDI +   R        +L    LW    + Y F  +  +  +++ + + +Q+L   T
Sbjct: 18  FEGDIKLRAGRQPARVGAAILGDEYLWSGGVIPYTF--AGVSGADQSAILSGMQELEEKT 75

Query: 58  CVRFVPRTNQDTYLRFRNTGFGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLG 117
           C+RFVPRT +  Y+    +G GC S VG   I     + L    C   G I H ++H++G
Sbjct: 76  CIRFVPRTTESDYVEIFTSGSGCWSYVGR--ISGAQQVSLQANGCVYHGTILHALMHAIG 133

Query: 118 FWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKD 177
           F+HEHTR DRD +V +  +N+ P    N +          G  Y Y SIMHY   +FS  
Sbjct: 134 FYHEHTRMDRDNYVTINYQNVDPSMTSNFDIDTYSR--YVGEDYQYYSIMHYGKYSFSIQ 191

Query: 178 G-VSKTIVPLYPGAEDT-MGQRDAMSRVDLAKLNRLYKC 214
             V +TIVPL  G + T    +  M + D  ++N LY  
Sbjct: 192 WGVLETIVPLQNGIDLTDPYDKAHMLQTDANQINNLYTN 230

>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme, protease, Z disulfide bond, hydrolase, metal-binding, metalloprotease,; 1.45A {Astacus astacus} PDB: 1iab_A 1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A Length = 235

 Score = 89.5 bits (222), Expect = 6e-21
 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 4/80 (5%)

Query: 217 NYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDG-VSKTIVPLYPGAEDT-M 274
           N       N +             Y Y SIMHY   +FS    V +TIVPL  G + T  
Sbjct: 153 NVDPSMTSNFDIDTYSR--YVGEDYQYYSIMHYGKYSFSIQWGVLETIVPLQNGIDLTDP 210

Query: 275 GQRDAMSRVDLAKLNRLYKC 294
             +  M + D  ++N LY  
Sbjct: 211 YDKAHMLQTDANQINNLYTN 230

>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative splicing, calcium, chondrogenesis, cleavage on PAIR of basic residues, cytokine; 1.25A {Homo sapiens} PDB: 3edg_A 3edi_A Length = 201

 Score =  239 bits (611), Expect = 1e-78
 Identities = 78/196 (39%), Positives = 112/196 (57%), Gaps = 5/196 (2%)

Query: 22  QLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCA 81
           ++WPD  + +      FT  ++ +   A++    HTCV F+ RT++D+Y+ F     GC 
Sbjct: 8   RVWPDGVIPFVI-GGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCC 66

Query: 82  SPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPG 141
           S VG    G    I +G   C   G + HE+ H +GFWHEHTRPDRD+ V ++RENI PG
Sbjct: 67  SYVGRRG-GGPQAISIGKN-CDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPG 124

Query: 142 HEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYP--GAEDTMGQRDA 199
            E+N  +     V + G  YD+ SIMHY+   FS+     TIVP Y   G +  +GQR  
Sbjct: 125 QEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPIGQRTR 184

Query: 200 MSRVDLAKLNRLYKCP 215
           +S+ D+A+  +LYKCP
Sbjct: 185 LSKGDIAQARKLYKCP 200

>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative splicing, calcium, chondrogenesis, cleavage on PAIR of basic residues, cytokine; 1.25A {Homo sapiens} PDB: 3edg_A 3edi_A Length = 201

 Score = 99.8 bits (249), Expect = 5e-25
 Identities = 31/81 (38%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 217 NYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYP--GAEDTM 274
           N   G E+N  +     V +    YD+ SIMHY+   FS+     TIVP Y   G +  +
Sbjct: 120 NIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVNGVKPPI 179

Query: 275 GQRDAMSRVDLAKLNRLYKCP 295
           GQR  +S+ D+A+  +LYKCP
Sbjct: 180 GQRTRLSKGDIAQARKLYKCP 200

>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease, astacin, metal- protease; 1.10A {Danio rerio} Length = 199

 Score =  219 bits (560), Expect = 6e-71
 Identities = 75/197 (38%), Positives = 106/197 (53%), Gaps = 13/197 (6%)

Query: 23  LWPDKT-----VYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTG 77
            W         V Y     EF+I +K+++ NAI      TC+RFVPR+ Q  YL   N  
Sbjct: 11  FWKKNANNIVEVPYVV-SGEFSINDKSVIANAISIFHAQTCIRFVPRSIQADYLSIENKD 69

Query: 78  FGCASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLREN 137
            GC S +G    G    + L  + C   G  QHE+ H+LGF+HE +R DRDQ+VR+   N
Sbjct: 70  -GCYSAIGR--TGGKQVVSLNRKGCVYSGIAQHELNHALGFYHEQSRSDRDQYVRINWNN 126

Query: 138 IGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQR 197
           I PG  +N  ++ T        PYDYGS+MHY   AF+     +TI P+ P     +GQR
Sbjct: 127 ISPGMAYNFLKQKT---NNQNTPYDYGSLMHYGKTAFAIQPGLETITPI-PDENVQIGQR 182

Query: 198 DAMSRVDLAKLNRLYKC 214
             +S++D+ ++N+LY C
Sbjct: 183 QGLSKIDILRINKLYGC 199

>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease, astacin, metal- protease; 1.10A {Danio rerio} Length = 199

 Score = 89.8 bits (223), Expect = 2e-21
 Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 4/78 (5%)

Query: 217 NYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQ 276
           N   G  +N  ++        + PYDYGS+MHY   AF+     +TI P+ P     +GQ
Sbjct: 126 NISPGMAYNFLKQ---KTNNQNTPYDYGSLMHYGKTAFAIQPGLETITPI-PDENVQIGQ 181

Query: 277 RDAMSRVDLAKLNRLYKC 294
           R  +S++D+ ++N+LY C
Sbjct: 182 RQGLSKIDILRINKLYGC 199

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 33/208 (15%), Positives = 66/208 (31%), Gaps = 57/208 (27%)

Query: 4   DILIPRERDSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQD--LRMHTC-VR 60
              IP        +L  + +W D     +       +++ +LVE   ++  + + +  + 
Sbjct: 384 SAHIPTI------LL--SLIWFDVI-KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434

Query: 61  FVPRTNQDTYL------------RFRNTGFGCASPVGYFP--IG---TGID--------- 94
              +   +  L             F +          YF   IG     I+         
Sbjct: 435 LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR 494

Query: 95  -IFLGGRVCFLKGKIQHE------------ILHSLGFWHEHTR---PDRDQFVRVLRENI 138
            +FL  R  FL+ KI+H+             L  L F+  +     P  ++ V  + + +
Sbjct: 495 MVFLDFR--FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552

Query: 139 GPGHEFNLERRPTGSVRTFGMPYDYGSI 166
            P  E NL       +    +  +  +I
Sbjct: 553 -PKIEENLICSKYTDLLRIALMAEDEAI 579

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 31/165 (18%), Positives = 53/165 (32%), Gaps = 36/165 (21%)

Query: 218 YYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKD----GVSKTIVPLYPGAE-- 271
           ++  H  + E        T    Y Y  I+     AF  +     V      +    E  
Sbjct: 1   HHHHHHMDFE--------TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEID 52

Query: 272 DTMGQRDAMSRVDLAKLNRLYKC----PKNYYQGFDIQGFYSTSGPIPDLGYLPTGSGWF 327
             +  +DA+S        RL+       +   Q F ++          +  +L   S   
Sbjct: 53  HIIMSKDAVSGTL-----RLFWTLLSKQEEMVQKF-VEEVLR-----INYKFL--MSPIK 99

Query: 328 YKIGGPSDDRKI----MDKFFNNTIHFSKMKVGRDNSYT-YRYAL 367
            +   PS   ++     D+ +N+   F+K  V R   Y   R AL
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	367
3lq0_A	235	Proastacin; metallopeptidase, zymogen activation,	100.0
3edh_A	201	Bone morphogenetic protein 1; vicinal disulfide, a	100.0
4gwm_A	592	Meprin A subunit beta; mulidomain structure, hydro	100.0
3lqb_A	199	Hatching enzyme, LOC792177 protein; hydrolase, met	100.0
3edh_A	201	Bone morphogenetic protein 1; vicinal disulfide, a	99.89
2jsd_A	160	Matrix metalloproteinase-20; MMP-NNGH, structural	99.88
3lqb_A	199	Hatching enzyme, LOC792177 protein; hydrolase, met	99.86
1cge_A	168	Fibroblast collagenase; hydrolase (metalloprotease	99.85
1hy7_A	173	Stromelysin-1, MMP-3; mixed alpha beta structure,	99.85
3lq0_A	235	Proastacin; metallopeptidase, zymogen activation,	99.85
4gwm_A	592	Meprin A subunit beta; mulidomain structure, hydro	99.85
1i76_A	163	MMP-8;, neutrophil collagenase; hydrolase, complex	99.82
2y6d_A	174	Matrilysin; hydrolase; HET: TQJ; 1.60A {Homo sapie	99.81
1hv5_A	165	Stromelysin 3; inhibition, phosphinic inhibitor, h	99.81
1slm_A	255	Stromelysin-1; hydrolase, metalloprotease, fibrobl	99.79
2xs4_A	167	Karilysin protease; hydrolase, bacterial MMP, viru	99.77
1y93_A	159	Macrophage metalloelastase; matrix metalloproteina	99.77
3ayu_A	167	72 kDa type IV collagenase; protease, hydrolase-hy	99.75
2ovx_A	159	Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9)	99.75
1su3_A	450	Interstitial collagenase; prodomain, hemopexin dom	99.69
1rm8_A	169	MMP-16, matrix metalloproteinase-16, MT3-MMP; memb	99.68
3ba0_A	365	Macrophage metalloelastase; FULL-length MMP-12, he	99.6
830c_A	168	MMP-13, MMP-13; matrix metalloprotease; HET: RS1;	99.59
1k7i_A	479	PROC, secreted protease C; metalloprotease, hydrol	99.51
1kap_P	479	Alkaline protease; calcium binding protein, zinc m	99.5
1g9k_A	463	Serralysin; beta jelly roll, hydrolase; 1.96A {Pse	99.49
1sat_A	471	Serratia protease; parallel beta helix, parallel b	99.48
3ma2_D	181	Matrix metalloproteinase-14; protein - protein com	99.43
1eak_A	421	72 kDa type IV collagenase; hydrolase-hydrolase in	98.95
1c7k_A	132	NCNP, zinc endoprotease; alpha and beta protein, m	98.69
1l6j_A	425	Matrix metalloproteinase-9; twisted beta sheet fla	98.68
1ck7_A	631	Protein (gelatinase A); hydrolase (metalloprotease	98.53
3poj_A	115	Mannan-binding lectin serine protease 1; CUB domai	95.35
1szb_A	170	Mannose binding lectin-associated serine protease-	95.17
2wno_A	149	Tumor necrosis factor-inducible gene 6 protein; gl	95.02
2cki_A	262	Ulilysin; metalloprotease, hydrolase; HET: ARG; 1.	94.12
1nzi_A	159	Complement C1S component; calcium, innate immunity	94.08
4gz9_A	577	Neuropilin-1, A5 protein; multi-domain, cell-CELL	93.4
2qqm_A	450	Neuropilin-1; VEGF receptor, semaphorin receptor,	93.14
2w15_A	202	Zinc metalloproteinase BAP1; hydrolase inhibitor c	92.73
4aqb_A	361	Mannan-binding lectin serine protease 1; blood clo	92.66
3dem_A	278	Complement factor MAsp-3; complement system, innat	92.53
1bud_A	197	Protein (acutolysin A); metalloproteinase, snake v	92.52
4axq_A	163	Archaemetzincin; metalloprotease, protease, hydrol	92.45
1qua_A	197	Acutolysin-C, hemorrhagin III; metalloprotease, he	92.44
1atl_A	202	Atrolysin C; metalloendopeptidase, hydrolase-hydro	92.4
1kuf_A	203	Atrolysin E, metalloproteinase; alpha/beta protein	92.38
1yp1_A	202	FII; FII hydrolase; 1.90A {Deinagkistrodon acutus}	92.29
3b8z_A	217	Protein adamts-5; alpha/beta, hydrolase; HET: 294;	92.11
1nt0_A	286	MAsp2, mannose-binding protein associated serine p	91.76
1nt0_A	286	MAsp2, mannose-binding protein associated serine p	91.41
2ddf_A	257	ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapi	91.24
1spp_B	116	Major seminal plasma glycoprotein PSP-II; seminal	91.19
1spp_A	109	Major seminal plasma glycoprotein PSP-I; seminal p	90.99
2v4b_A	300	Adamts-1; zymogen, protease, hydrolase, metallopro	90.93
1r55_A	214	ADAM 33; metalloprotease, inhibitor, asthma, hydro	90.8
3dem_A	278	Complement factor MAsp-3; complement system, innat	90.65
4dd8_A	208	Disintegrin and metalloproteinase domain-containi	90.63
2qqo_A	460	Neuropilin-2; VEGF receptor, semaphorin receptor,	90.57
2rjp_A	316	Adamts-4; metalloprotease domain, aggrecanase, cle	90.44
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	90.29
2rjq_A	378	Adamts-5; metalloprotease domain, aggrecanase, cle	90.17
4aqb_A	361	Mannan-binding lectin serine protease 1; blood clo	90.11
3p24_A	397	BFT-3; metzincins, metalloendopeptidase, hydrolase	90.02
3lmc_A	210	Peptidase, zinc-dependent; structural genomics, PS	89.87
2i47_A	288	ADAM 17; TACE-inhibitor complex, hydrolase; HET: I	89.76
2x7m_A	195	Archaemetzincin; metalloprotease, protease, hydrol	89.04
2e3x_A	427	Coagulation factor X-activating enzyme light CHAI;	88.87
2ero_A	427	VAP-1, vascular apoptosis-inducing protein 1; meta	88.85
1sfp_A	114	ASFP; spermadhesin, bovine seminal plasma protein,	88.61
2dw0_A	419	Catrocollastatin; apoptotic toxin, SVMP, metallopr	88.58
3k7n_A	397	K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {	87.65
3k7l_A	422	Atragin; SVMP, metalloprotease, hydrolase; HET: NA	86.94
2qqk_A	579	Neuropilin-2; VEGF receptor, semaphorin receptor,	86.68
1lml_A	478	Leishmanolysin; metalloprotease, glycoprotein; 1.8	85.67
3kq4_B	457	Cubilin; protein-protein complex, cobalt, cobalt t	85.16
4gz9_A	577	Neuropilin-1, A5 protein; multi-domain, cell-CELL	84.63
3g5c_A	510	ADAM 22; alpha/beta fold, cross-linked domain, cel	83.89
2qqk_A	579	Neuropilin-2; VEGF receptor, semaphorin receptor,	81.93

>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme, protease, D bond, hydrolase, metal-binding, metalloprotease, zymogen; 1.45A {Astacus astacus} PDB: 1iab_A 1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A

Probab=100.00  E-value=2.7e-63  Score=458.49  Aligned_cols=207  Identities=31%  Similarity=0.543  Sum_probs=191.2

Q ss_pred             CCCccC-Ccccc--ccccccccCCCCcCCCeeEEEEcCCCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEEecCC
Q psy2949           1 MEGDIL-IPRER--DSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTG   77 (367)
Q Consensus         1 ~~GDi~-~~~q~--~~r~a~~~~~~~Wp~~~VpY~~~~~~~~~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i~~~~   77 (367)
                      |||||+ +++|.  ..|+|+.....+||+++|||.| +. |++.+++.|++||++|++.|||+|++++++.+||.|...+
T Consensus        18 ~eGDi~~~~~~~~~~~Rna~~~~~~~Wp~~~VpY~I-~~-~t~~~~~~I~~Am~~w~~~TCIrFvprt~e~dyI~f~~~~   95 (235)
T 3lq0_A           18 FEGDIKLRAGRQPARVGAAILGDEYLWSGGVIPYTF-AG-VSGADQSAILSGMQELEEKTCIRFVPRTTESDYVEIFTSG   95 (235)
T ss_dssp             BTTTEECCSSCCCEEETTEEECGGGSCGGGEEEEEE-ES-CCHHHHHHHHHHHHHHHHHSSCEEEECSSCSSEEEEESSS
T ss_pred             cccceeecccCCCccCcceeeCCCCcCCCCEEEEEE-cC-CCHHHHHHHHHHHHHHHhcccceEEEcCCCCceEEEEeCC
Confidence            699999 77763  5799999999999999999999 66 9999999999999999999999999999889999998766


Q ss_pred             CCccCCCCCCCCCcccccccC-CCcccccchhHHHHHhhhcccccccCCCCCcceEEeeCCcCCCCCcccccCCCCcccc
Q psy2949          78 FGCASPVGYFPIGTGIDIFLG-GRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRT  156 (367)
Q Consensus        78 ~gc~S~vG~~~g~q~i~~~~l-~~~c~~~g~i~HEigHALG~~HEh~rpDRD~yv~I~~~ni~~~~~~nf~k~~~~~~~~  156 (367)
                      .||||+||+.+|.|.|+   | +.+|...|+|+|||||||||+|||+|||||+||+|+|+||.++.++||.|++..  .+
T Consensus        96 ~GC~S~vG~~gg~Q~ls---L~~~gC~~~g~i~HEl~HaLGf~HEhsR~DRD~yV~I~~~nI~~~~~~nF~k~~~~--~~  170 (235)
T 3lq0_A           96 SGCWSYVGRISGAQQVS---LQANGCVYHGTILHALMHAIGFYHEHTRMDRDNYVTINYQNVDPSMTSNFDIDTYS--RY  170 (235)
T ss_dssp             SSEEEESSCCSSEEEEE---ECTTTTCSHHHHHHHHHHHHHBCCGGGSTTGGGTEEECGGGBCTTSGGGGCCCTTS--CC
T ss_pred             CCCccccCCcCCcceEe---cCCCCCCccchHHHHHHHHhccceeeecccccceeEeehhccCcchHHHhccCCcc--cc
Confidence            69999999999999998   6 789999999999999999999999999999999999999999999999998875  67


Q ss_pred             cCCcCCCCCCcCcccceeccC-CCcceeeeC-CCCC-CCccCccccccHHHHHHHHHHhcCC
Q psy2949         157 FGMPYDYGSIMHYSGIAFSKD-GVSKTIVPL-YPGA-EDTMGQRDAMSRVDLAKLNRLYKCP  215 (367)
Q Consensus       157 ~g~~YD~~SIMhY~~~~fs~~-~~~~ti~~~-~~~~-~~~IG~r~~lS~~D~~~in~lY~C~  215 (367)
                      +|+||||+|||||++.+||++ +. +||+|+ ++.. ...||||.+||..|+.+||+||+|+
T Consensus       171 ~g~pYDy~SvMHY~~~aFs~n~g~-~Ti~~~~~~~~~~~~iGqr~~lS~~Di~~in~lY~C~  231 (235)
T 3lq0_A          171 VGEDYQYYSIMHYGKYSFSIQWGV-LETIVPLQNGIDLTDPYDKAHMLQTDANQINNLYTNE  231 (235)
T ss_dssp             CCSCCCTTCTTCCCTTTTBTTTTT-SCSEEESSTTCCCCCGGGCSSCCHHHHHHHHHHTHHH
T ss_pred             CCCcCCCCcccCCCCcccccCCCC-CcEEECCCCCcccccccccCCCCHHHHHHHHHhcCCC
Confidence            899999999999999999999 66 999997 4442 3489999999999999999999994

>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative splicing, calcium, chondrogenesis, cleavage on PAIR of basic residues, cytokine; 1.25A {Homo sapiens} SCOP: d.92.1.0 PDB: 3edg_A 3edi_A

Probab=100.00  E-value=2.2e-61  Score=436.84  Aligned_cols=197  Identities=39%  Similarity=0.709  Sum_probs=181.7

Q ss_pred             ccccCCCCcCCCeeEEEEcCCCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEEecCCCCccCCCCCCC-CCcccc
Q psy2949          16 LVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCASPVGYFP-IGTGID   94 (367)
Q Consensus        16 a~~~~~~~Wp~~~VpY~~~~~~~~~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i~~~~~gc~S~vG~~~-g~q~i~   94 (367)
                      |+.....+||+++|||.| +.+|++.+++.|++||++|++.|||+|++++++.+||.|...+.||||+||+.+ +.|.++
T Consensus         2 ~~~~~~~~Wp~~~VpY~I-~~~~s~~~~~~I~~A~~~w~~~TCIrFv~~t~e~dyI~f~~~~~GC~S~vG~~g~~~q~~s   80 (201)
T 3edh_A            2 ATSRPERVWPDGVIPFVI-GGNFTGSQRAVFRQAMRHWEKHTCVTFLERTDEDSYIVFTYRPCGCCSYVGRRGGGPQAIS   80 (201)
T ss_dssp             BBCCGGGSCGGGEEEEEE-CSSCCHHHHHHHHHHHHHHHHHSSCEEEECSSCSSEEEEEECCSCSCCCSSCCCSSEEEEE
T ss_pred             CcCCCCCcCCCcEEEEEE-CCCCCHHHHHHHHHHHHHHHhhccceEEEcCCCCcEEEEEcCCCCCccccCCcCCceeeee
Confidence            566678899999999999 778999999999999999999999999999988999999876569999999987 467777


Q ss_pred             cccCCCcccccchhHHHHHhhhcccccccCCCCCcceEEeeCCcCCCCCcccccCCCCcccccCCcCCCCCCcCccccee
Q psy2949          95 IFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAF  174 (367)
Q Consensus        95 ~~~l~~~c~~~g~i~HEigHALG~~HEh~rpDRD~yv~I~~~ni~~~~~~nf~k~~~~~~~~~g~~YD~~SIMhY~~~~f  174 (367)
                         |+.+|...|+|+|||||||||+|||+|||||+||+|+|+||.++.++||.|++...++++|+||||+|||||++.+|
T Consensus        81 ---l~~~C~~~g~i~HEl~HalGf~HE~~R~DRD~yV~I~~~ni~~~~~~nF~k~~~~~~~~~g~~YDy~SvMHY~~~aF  157 (201)
T 3edh_A           81 ---IGKNCDKFGIVVHELGHVVGFWHEHTRPDRDRHVSIVRENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTF  157 (201)
T ss_dssp             ---ECGGGCSHHHHHHHHHHHHTBCCGGGSTTGGGTEEECGGGBCTTCGGGGCCCCGGGBCCTTCCCCTTCTTCCCTTTT
T ss_pred             ---cCCCcCccchhHHHHHHHhcchhhhhhhccCcEEEEehhccCcchhHhhhcCChhhccccCCccCCCCcccCCCccc
Confidence               78899999999999999999999999999999999999999999999999999988899999999999999999999


Q ss_pred             ccCCCcceeeeCCCC--CCCccCccccccHHHHHHHHHHhcCCC
Q psy2949         175 SKDGVSKTIVPLYPG--AEDTMGQRDAMSRVDLAKLNRLYKCPK  216 (367)
Q Consensus       175 s~~~~~~ti~~~~~~--~~~~IG~r~~lS~~D~~~in~lY~C~~  216 (367)
                      |++...+||+|+.+.  .+..||||.+||..|+.+||+||+|++
T Consensus       158 s~~~~~~Ti~p~~~~~~~~~~iGqr~~lS~~Di~~in~lY~C~~  201 (201)
T 3edh_A          158 SRGIFLDTIVPKYEVNGVKPPIGQRTRLSKGDIAQARKLYKCPA  201 (201)
T ss_dssp             BSSTTSCSEEESSCBTTBCCCCCCCSSCCHHHHHHHHHHTTCCC
T ss_pred             cCCCCCCceEeCCCCCcccccCcccCCCCHHHHHHHHHhcCCCC
Confidence            998555999998653  336899999999999999999999963

>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*

Probab=100.00  E-value=1.6e-59  Score=482.51  Aligned_cols=218  Identities=35%  Similarity=0.613  Sum_probs=195.1

Q ss_pred             CCCccC-CccccccccccccCCCCcCCCeeEEEEcCCCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEEecCCCC
Q psy2949           1 MEGDIL-IPRERDSRNLVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFG   79 (367)
Q Consensus         1 ~~GDi~-~~~q~~~r~a~~~~~~~Wp~~~VpY~~~~~~~~~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i~~~~~g   79 (367)
                      |||||+ +++  +.|+|+.....+||+ +|||.| +.+|+..+++.|++||++|+++|||||+|++++.+||.|. .+.|
T Consensus        27 feGDI~l~~~--~~rn~~~~~~~rWp~-~IPY~i-~~~~~~~~~~~I~~Am~~~~~~TCIrF~pr~~e~~yi~i~-~~~G  101 (592)
T 4gwm_A           27 FEGDIRLDRA--QIRNSIIGEKYRWPH-TIPYVL-EDSLEMNAKGVILNAFERYRLKTCIDFKPWAGETNYISVF-KGSG  101 (592)
T ss_dssp             BTTTBCCCTT--CCTTCCCCGGGCCCS-EEEEEE-CTTSCHHHHHHHHHHHHHHHHHSSCEEEECSSCSSEEEEE-CCSS
T ss_pred             eccccCCCch--hhhhhhcCccccCCc-eEEEEE-CCCCCHHHHHHHHHHHHHHHhCCceeeEECCCCCCeEEEe-cCCc
Confidence            799999 776  358899989999996 899999 8889999999999999999999999999999999999997 4689


Q ss_pred             ccCCCC-CCCCCcccccccCCCcccccchhHHHHHhhhcccccccCCCCCcceEEeeCCcCCCCCcccccCCCCcccccC
Q psy2949          80 CASPVG-YFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFG  158 (367)
Q Consensus        80 c~S~vG-~~~g~q~i~~~~l~~~c~~~g~i~HEigHALG~~HEh~rpDRD~yv~I~~~ni~~~~~~nf~k~~~~~~~~~g  158 (367)
                      |||+|| +.+|.|.|+   |+.+|...|+|+|||||||||+|||+|||||+||+|+|+||.++.++||.|+....+.++|
T Consensus       102 C~S~vG~~~gg~Q~ls---l~~gC~~~Gti~HEl~HALGf~HEqsR~DRD~yV~I~~~NI~~~~~~nF~k~~~~~~~~~g  178 (592)
T 4gwm_A          102 CWSSVGNRRVGKQELS---IGANCDRIATVQHEFLHALGFWHEQSRSDRDDYVRIMWDRILSGREHNFNTYSDDISDSLN  178 (592)
T ss_dssp             EEECSSCCCSSEEEEE---ECTTCCCHHHHHHHHHHHHTCCCSTTSTTGGGTEEECGGGBCTTCGGGGCCCCC------C
T ss_pred             EeeeeCccCCCceEEe---eCCCcCCCChHHHHHHHHhcccccccCcCccceEEEehhhcCcchhhHHhhcCccccccCC
Confidence            999999 467889988   7899999999999999999999999999999999999999999999999999998889999


Q ss_pred             CcCCCCCCcCcccceeccCCCcceeeeCCCCCCCccCccccccHHHHHHHHHHhcCCCCcccCcccccc
Q psy2949         159 MPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKCPKNYYQGHEFNLE  227 (367)
Q Consensus       159 ~~YD~~SIMhY~~~~fs~~~~~~ti~~~~~~~~~~IG~r~~lS~~D~~~in~lY~C~~nI~~g~~~Nf~  227 (367)
                      +||||+|||||++++|++++. +||+|+++.....||||.+||..|+.+||+||+|+..+..-...+|+
T Consensus       179 ~pYDy~SVMHY~~~aFs~~~~-~Ti~~~~~~~~~~iGqr~~lS~~Di~~iN~lY~C~~~~~~~~~C~FE  246 (592)
T 4gwm_A          179 VPYDYTSVMHYSKTAFQNGTE-PTIVTRISDFEDVIGQRMDFSDSDLLKLNQLYNCSSSLSFMDSCSFE  246 (592)
T ss_dssp             CCCCTTCTTSCCTTTTBSSSS-CSEEESSGGGTTTTTCCSSCCHHHHHHHHHHTTCSCCSSEEEEECCC
T ss_pred             CCcCCCccCcCCCCccccCCc-ceEEecCCCccCCccccccCcHHHHHHHHHhcCCCCccccccCCCcc
Confidence            999999999999999999988 99999988877889999999999999999999998766544444444

>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease, astacin, metal- protease; 1.10A {Danio rerio}

Probab=100.00  E-value=2.5e-58  Score=415.33  Aligned_cols=184  Identities=40%  Similarity=0.759  Sum_probs=170.1

Q ss_pred             CCCcCCC-----eeEEEEcCCCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEEecCCCCccCCCCCCCCCccccc
Q psy2949          21 AQLWPDK-----TVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCASPVGYFPIGTGIDI   95 (367)
Q Consensus        21 ~~~Wp~~-----~VpY~~~~~~~~~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i~~~~~gc~S~vG~~~g~q~i~~   95 (367)
                      ..+||+.     +|||.| +++|++.+++.|++||++|++.|||+|++++++.+||.|.. +.||||+||+.+|.|.|+ 
T Consensus         9 ~~~W~k~~~G~v~VPY~i-~~~~~~~~~~~I~~A~~~w~~~TCIrFv~r~~~~~yi~i~~-~~GC~S~vG~~gg~q~~s-   85 (199)
T 3lqb_A            9 SCFWKKNANNIVEVPYVV-SGEFSINDKSVIANAISIFHAQTCIRFVPRSIQADYLSIEN-KDGCYSAIGRTGGKQVVS-   85 (199)
T ss_dssp             TTSCCBCTTSCEEEEEEE-CTTSCHHHHHHHHHHHHHHHHHSSEEEEECSSCSSEEEEEC-CSSEEECSSCCSSEEEEE-
T ss_pred             CCCCCCCCCCCEEEEEEE-CCCCCHHHHHHHHHHHHHHHhccCceEEEcCCCCcEEEEEc-CCCcccccCccCCcceEE-
Confidence            5688864     799999 78899999999999999999999999999999999999975 589999999999999998 


Q ss_pred             ccCCC-cccccchhHHHHHhhhcccccccCCCCCcceEEeeCCcCCCCCcccccCCCCcccccCCcCCCCCCcCccccee
Q psy2949          96 FLGGR-VCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAF  174 (367)
Q Consensus        96 ~~l~~-~c~~~g~i~HEigHALG~~HEh~rpDRD~yv~I~~~ni~~~~~~nf~k~~~~~~~~~g~~YD~~SIMhY~~~~f  174 (367)
                        |+. +|...|+|+|||||||||+|||+|||||+||+|+|+||.++.++||.|+.   ..++++||||+|||||++.+|
T Consensus        86 --l~~~~C~~~g~i~HEl~HaLGf~HEh~R~DRD~yV~I~~~nI~~~~~~nF~k~~---~~~~~~pYDy~SvMHY~~~aF  160 (199)
T 3lqb_A           86 --LNRKGCVYSGIAQHELNHALGFYHEQSRSDRDQYVRINWNNISPGMAYNFLKQK---TNNQNTPYDYGSLMHYGKTAF  160 (199)
T ss_dssp             --ECTTTCCSHHHHHHHHHHHHTCCCGGGSTTGGGTEEECGGGBCTTCGGGGCCCC---BCCTTCCCCTTCTTCCCTTTT
T ss_pred             --ecCCCCCccchHHHHHHHHhccceeeeccCcCceEEeehhhcCcchhhhccccc---ccccCCcCCCCcccCCCCccc
Confidence              676 99999999999999999999999999999999999999999999999975   456899999999999999999


Q ss_pred             ccC-CCcceeeeCCCCCCCccCccccccHHHHHHHHHHhcC
Q psy2949         175 SKD-GVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKC  214 (367)
Q Consensus       175 s~~-~~~~ti~~~~~~~~~~IG~r~~lS~~D~~~in~lY~C  214 (367)
                      |++ +. +||+|+... ...||||.+||..|+.+||+||+|
T Consensus       161 s~n~g~-~Ti~~~~~~-~~~iGqr~~lS~~Di~~in~lY~C  199 (199)
T 3lqb_A          161 AIQPGL-ETITPIPDE-NVQIGQRQGLSKIDILRINKLYGC  199 (199)
T ss_dssp             BSSTTC-CSEEESSCT-TSCCCCCSSCCHHHHHHHHHHHTC
T ss_pred             ccCCCC-CeEEECCCC-CCCcccccCCCHHHHHHHHHhcCC
Confidence            999 65 999998332 367999999999999999999998

>3edh_A Bone morphogenetic protein 1; vicinal disulfide, alternative splicing, calcium, chondrogenesis, cleavage on PAIR of basic residues, cytokine; 1.25A {Homo sapiens} SCOP: d.92.1.0 PDB: 3edg_A 3edi_A

Probab=99.89  E-value=2.5e-24  Score=194.25  Aligned_cols=104  Identities=32%  Similarity=0.544  Sum_probs=92.8

Q ss_pred             CCccCccccccHHHHHHHHHHhcCCCCcccCcccccccCCCCcccccccCCCCCCcccccccccccCCCceeeeeCCCC-
Q psy2949         191 EDTMGQRDAMSRVDLAKLNRLYKCPKNYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPG-  269 (367)
Q Consensus       191 ~~~IG~r~~lS~~D~~~in~lY~C~~nI~~g~~~Nf~~~~~~~~~~~~~pYDy~SiMhY~~~~fs~~~~~~ti~~~~~~-  269 (367)
                      .|++|..|+.|+.|++....+.  .+||.++.+.||.|.+...++++++||||+|||||++++||++..++||+|+.+. 
T Consensus        96 ~HalGf~HE~~R~DRD~yV~I~--~~ni~~~~~~nF~k~~~~~~~~~g~~YDy~SvMHY~~~aFs~~~~~~Ti~p~~~~~  173 (201)
T 3edh_A           96 GHVVGFWHEHTRPDRDRHVSIV--RENIQPGQEYNFLKMEPQEVESLGETYDFDSIMHYARNTFSRGIFLDTIVPKYEVN  173 (201)
T ss_dssp             HHHHTBCCGGGSTTGGGTEEEC--GGGBCTTCGGGGCCCCGGGBCCTTCCCCTTCTTCCCTTTTBSSTTSCSEEESSCBT
T ss_pred             HHHhcchhhhhhhccCcEEEEe--hhccCcchhHhhhcCChhhccccCCccCCCCcccCCCccccCCCCCCceEeCCCCC
Confidence            3789999999999999866554  4789999999999999988899999999999999999999998667999998643 


Q ss_pred             -CccccccccCCCHHHHHHHhhhccCCC
Q psy2949         270 -AEDTMGQRDAMSRVDLAKLNRLYKCPK  296 (367)
Q Consensus       270 -~~~~~gqr~~~s~~D~~~in~~Y~C~~  296 (367)
                       ...+||||.+||+.||++||+||+|+.
T Consensus       174 ~~~~~iGqr~~lS~~Di~~in~lY~C~~  201 (201)
T 3edh_A          174 GVKPPIGQRTRLSKGDIAQARKLYKCPA  201 (201)
T ss_dssp             TBCCCCCCCSSCCHHHHHHHHHHTTCCC
T ss_pred             cccccCcccCCCCHHHHHHHHHhcCCCC
Confidence             336899999999999999999999974

>2jsd_A Matrix metalloproteinase-20; MMP-NNGH, structural genomics, structural proteomics in europe, spine, spine-2, spine2-complexes, hydrolase; HET: NGH; NMR {Homo sapiens}

Probab=99.88  E-value=5.2e-22  Score=172.97  Aligned_cols=101  Identities=19%  Similarity=0.137  Sum_probs=76.1

Q ss_pred             CCCcCCCeeEEEEcCC---CCCH-HHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEEec---CCCCccCCCCCCCCCc--
Q psy2949          21 AQLWPDKTVYYNFEDS---EFTI-YEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRN---TGFGCASPVGYFPIGT--   91 (367)
Q Consensus        21 ~~~Wp~~~VpY~~~~~---~~~~-~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i~~---~~~gc~S~vG~~~g~q--   91 (367)
                      ..+||+.+|+|.| ..   .++. .+++.|++||+.|++.+||+|++++.+...|+|..   ...+|||++|+.+..+  
T Consensus         2 ~~~W~~~~itY~i-~~~~~~~~~~~~~~~i~~A~~~W~~~t~l~F~~~~~~~adi~i~f~~~~~g~~~~~~G~~g~~a~a   80 (160)
T 2jsd_A            2 EPKWKKNTLTYRI-SKYTPSMSSVEVDKAVEMALQAWSSAVPLSFVRINSGEADIMISFENGDHGDSYPFDGPRGTLAHA   80 (160)
T ss_dssp             CSSCSCSEEEEEE-CCCCSSSCHHHHHHHHHHHHHHHHHHSSCEEEECSSSCCSEEEEEECSCSSSSSCCCSSSSCSEEE
T ss_pred             CCcccCCeEEEEE-eCCCCCCCHHHHHHHHHHHHHHHHccCCeeEEEecCCCCCEEEEEeeccCCCCccccCCCCeeEEE
Confidence            4689999999999 44   3554 56999999999999999999999875444554432   2358999999855321  


Q ss_pred             -----------ccc---cccCC-CcccccchhHHHHHhhhcccccc
Q psy2949          92 -----------GID---IFLGG-RVCFLKGKIQHEILHSLGFWHEH  122 (367)
Q Consensus        92 -----------~i~---~~~l~-~~c~~~g~i~HEigHALG~~HEh  122 (367)
                                 .++   .++++ .+|...++++|||||||||.||+
T Consensus        81 ~~p~~~~~g~~~~d~~~~~~~~~~g~~~~~v~~HEiGHaLGL~H~~  126 (160)
T 2jsd_A           81 FAPGEGLGGDTHFDNAEKWTMGTNGFNLFTVAAHEFGHALGLAHST  126 (160)
T ss_dssp             CCSSSSSTTCEEEETTSCEESSSSSEEHHHHHHHHHHHHHTCCCCC
T ss_pred             ecCCCCcCccEEeccccccccCCcchhhHHHHHHHhHhhhcCCCCC
Confidence                       111   11122 47877899999999999999998

>3lqb_A Hatching enzyme, LOC792177 protein; hydrolase, metalloprotease, astacin, metal- protease; 1.10A {Danio rerio}

Probab=99.86  E-value=5.9e-23  Score=184.67  Aligned_cols=98  Identities=33%  Similarity=0.625  Sum_probs=86.7

Q ss_pred             CCccCccccccHHHHHHHHHHhcCCCCcccCcccccccCCCCcccccccCCCCCCcccccccccccCCCceeeeeCCCCC
Q psy2949         191 EDTMGQRDAMSRVDLAKLNRLYKCPKNYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGA  270 (367)
Q Consensus       191 ~~~IG~r~~lS~~D~~~in~lY~C~~nI~~g~~~Nf~~~~~~~~~~~~~pYDy~SiMhY~~~~fs~~~~~~ti~~~~~~~  270 (367)
                      .|++|..++.|+.|++....+.  ++||.++.+.||.|.+   ..++++||||+|||||++++||++..++||+|+ +..
T Consensus       102 ~HaLGf~HEh~R~DRD~yV~I~--~~nI~~~~~~nF~k~~---~~~~~~pYDy~SvMHY~~~aFs~n~g~~Ti~~~-~~~  175 (199)
T 3lqb_A          102 NHALGFYHEQSRSDRDQYVRIN--WNNISPGMAYNFLKQK---TNNQNTPYDYGSLMHYGKTAFAIQPGLETITPI-PDE  175 (199)
T ss_dssp             HHHHTCCCGGGSTTGGGTEEEC--GGGBCTTCGGGGCCCC---BCCTTCCCCTTCTTCCCTTTTBSSTTCCSEEES-SCT
T ss_pred             HHHhccceeeeccCcCceEEee--hhhcCcchhhhccccc---ccccCCcCCCCcccCCCCcccccCCCCCeEEEC-CCC
Confidence            3789999999999999866654  5889999999999876   358899999999999999999999556999998 344


Q ss_pred             ccccccccCCCHHHHHHHhhhccC
Q psy2949         271 EDTMGQRDAMSRVDLAKLNRLYKC  294 (367)
Q Consensus       271 ~~~~gqr~~~s~~D~~~in~~Y~C  294 (367)
                      ..+||||.+||+.||++||+||+|
T Consensus       176 ~~~iGqr~~lS~~Di~~in~lY~C  199 (199)
T 3lqb_A          176 NVQIGQRQGLSKIDILRINKLYGC  199 (199)
T ss_dssp             TSCCCCCSSCCHHHHHHHHHHHTC
T ss_pred             CCCcccccCCCHHHHHHHHHhcCC
Confidence            568999999999999999999999

>1cge_A Fibroblast collagenase; hydrolase (metalloprotease); 1.90A {Homo sapiens} SCOP: d.92.1.11 PDB: 2j0t_A 1ayk_A 1hfc_A* 2ayk_A 2tcl_A* 3ayk_A* 4ayk_A* 1cgl_A* 1cgf_A 966c_A* 3shi_A

Probab=99.85  E-value=7.9e-21  Score=166.93  Aligned_cols=102  Identities=18%  Similarity=0.141  Sum_probs=77.2

Q ss_pred             CCCCcCCCeeEEEEcCC---CCC-HHHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEEec-C--CCCccCCCCCCC----
Q psy2949          20 QAQLWPDKTVYYNFEDS---EFT-IYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRN-T--GFGCASPVGYFP----   88 (367)
Q Consensus        20 ~~~~Wp~~~VpY~~~~~---~~~-~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i~~-~--~~gc~S~vG~~~----   88 (367)
                      ...+||+.+|+|.| ..   .++ +.++++|++||+.|++.+||+|++++.+...|+|.. .  ..+|++++|+.+    
T Consensus         4 ~~~~W~~~~itY~i-~~~~~~~~~~~~~~~i~~A~~~W~~~t~l~F~~~~~~~adI~I~f~~~~~g~~~~~~G~~g~la~   82 (168)
T 1cge_A            4 GNPRWEQTHLRYRI-ENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNLAH   82 (168)
T ss_dssp             CCCCCSSSEEEEEE-CSCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECSSSCCSEEEEEECSCCSSSSCCCSSSSCCEE
T ss_pred             CCCccCCCEEEEEE-eCCCCCCCHHHHHHHHHHHHHHHhhccCceeEEecCCCCcEEEEEeeccccccccccccCCeEEE
Confidence            45799999999999 43   244 468999999999999999999999975555666642 2  257999998743    


Q ss_pred             ---------CCcccc---cccC-CCcccccchhHHHHHhhhcccccc
Q psy2949          89 ---------IGTGID---IFLG-GRVCFLKGKIQHEILHSLGFWHEH  122 (367)
Q Consensus        89 ---------g~q~i~---~~~l-~~~c~~~g~i~HEigHALG~~HEh  122 (367)
                               |...++   .+++ ..+|...++++|||||||||.|++
T Consensus        83 a~~P~~~~~g~~~~d~~~~w~~~~~g~~~~~v~~HEiGHaLGL~H~~  129 (168)
T 1cge_A           83 AFQPGPGIGGDAHFDEDERWTNNFREYNLHRVAAHELGHSLGLSHST  129 (168)
T ss_dssp             ECCSSSTTTTCEEEETTSCCBSSSSSCBHHHHHHHHHHHHTTCCCCS
T ss_pred             eECCCCCccceEEEccccccccCCCCcchhhhhhhHhHhhhcCCCCC
Confidence                     223232   1112 257877899999999999999996

>1hy7_A Stromelysin-1, MMP-3; mixed alpha beta structure, zinc protease, inhibited, hydrol; HET: MBS; 1.50A {Homo sapiens} SCOP: d.92.1.11 PDB: 1biw_A* 1bm6_A* 1bqo_A* 1b3d_A* 1cqr_A 1d5j_A* 1d7x_A* 1d8f_A* 1d8m_A* 1g05_A* 1g49_A* 1c3i_A* 1sln_A* 1uea_A 2srt_A* 1ums_A* 1umt_A* 2d1o_A* 3oho_A* 1ciz_A* ...

Probab=99.85  E-value=6.7e-21  Score=168.17  Aligned_cols=104  Identities=17%  Similarity=0.072  Sum_probs=78.5

Q ss_pred             cCCCCcCCCeeEEEEcCCC---CC-HHHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEEec-C--CCCccCCCCCCC---
Q psy2949          19 YQAQLWPDKTVYYNFEDSE---FT-IYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRN-T--GFGCASPVGYFP---   88 (367)
Q Consensus        19 ~~~~~Wp~~~VpY~~~~~~---~~-~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i~~-~--~~gc~S~vG~~~---   88 (367)
                      ....+||+.+|+|.| ...   ++ +.++++|++||+.|++.+||+|++++.+...|+|.. .  ..+|++++|+.+   
T Consensus         5 ~~~~~W~~~~ltY~i-~~~~~~~~~~~~~~~i~~A~~~W~~~t~l~F~~~~~~~adI~I~f~~~~~g~~~~~~G~~g~la   83 (173)
T 1hy7_A            5 PGIPKWRKTHLTYRI-VNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVLA   83 (173)
T ss_dssp             TTCCCCSSSEEEEEE-CCBCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECSSSCCSEEEEEECSSCSSSCCCCSSSSCCE
T ss_pred             CCCCccCCceEEEEE-eCCCCCCCHHHHHHHHHHHHHHHHhCCCcceEEecccCCCeeEEEecccccccceeeCCCceeE
Confidence            456899999999999 432   44 578999999999999999999999985566666542 2  256999998754   


Q ss_pred             ----------CCcccc---cccCC-CcccccchhHHHHHhhhccccccc
Q psy2949          89 ----------IGTGID---IFLGG-RVCFLKGKIQHEILHSLGFWHEHT  123 (367)
Q Consensus        89 ----------g~q~i~---~~~l~-~~c~~~g~i~HEigHALG~~HEh~  123 (367)
                                |...++   .++++ .+|...++++|||||||||.|+|.
T Consensus        84 ~a~~p~~~~~g~~~~d~~~~w~~~~~g~~~~~v~~HEiGHaLGL~H~~~  132 (173)
T 1hy7_A           84 HAYAPGPGINGDAHFDDDEQWTKDTTGTNLFLVAAHEIGHSLGLFHSAN  132 (173)
T ss_dssp             EECCSSSTTTTCEEEETTSCEESSSSSEEHHHHHHHHHHHHHTBCCCSC
T ss_pred             EEecCCCCccceEEeccccccccCCccchhhhhHHHHHHHhhcCCCCCC
Confidence                      211121   11233 578778999999999999999983

>3lq0_A Proastacin; metallopeptidase, zymogen activation, proenzyme, protease, D bond, hydrolase, metal-binding, metalloprotease, zymogen; 1.45A {Astacus astacus} PDB: 1iab_A 1iaa_A 1ast_A 1iac_A 1iad_A 1iae_A 1qji_A* 1qjj_A

Probab=99.85  E-value=6e-23  Score=189.15  Aligned_cols=102  Identities=21%  Similarity=0.206  Sum_probs=89.0

Q ss_pred             CCccCccccccHHHHHHHHHHhcCCCCcccCcccccccCCCCcccccccCCCCCCcccccccccccCCCceeeeeC-CCC
Q psy2949         191 EDTMGQRDAMSRVDLAKLNRLYKCPKNYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPL-YPG  269 (367)
Q Consensus       191 ~~~IG~r~~lS~~D~~~in~lY~C~~nI~~g~~~Nf~~~~~~~~~~~~~pYDy~SiMhY~~~~fs~~~~~~ti~~~-~~~  269 (367)
                      .|++|..|+.|+.|++....+.  ++||.++.+.||.|.+..  +++++||||+|||||++++||++..++||+|+ ++.
T Consensus       129 ~HaLGf~HEhsR~DRD~yV~I~--~~nI~~~~~~nF~k~~~~--~~~g~pYDy~SvMHY~~~aFs~n~g~~Ti~~~~~~~  204 (235)
T 3lq0_A          129 MHAIGFYHEHTRMDRDNYVTIN--YQNVDPSMTSNFDIDTYS--RYVGEDYQYYSIMHYGKYSFSIQWGVLETIVPLQNG  204 (235)
T ss_dssp             HHHHHBCCGGGSTTGGGTEEEC--GGGBCTTSGGGGCCCTTS--CCCCSCCCTTCTTCCCTTTTBTTTTTSCSEEESSTT
T ss_pred             HHHhccceeeecccccceeEee--hhccCcchHHHhccCCcc--ccCCCcCCCCcccCCCCcccccCCCCCcEEECCCCC
Confidence            3789999999999999866654  578999999999999876  78999999999999999999999456999997 333


Q ss_pred             C-ccccccccCCCHHHHHHHhhhccCCC
Q psy2949         270 A-EDTMGQRDAMSRVDLAKLNRLYKCPK  296 (367)
Q Consensus       270 ~-~~~~gqr~~~s~~D~~~in~~Y~C~~  296 (367)
                      . ..+||||.+||+.||++||+||+|++
T Consensus       205 ~~~~~iGqr~~lS~~Di~~in~lY~C~c  232 (235)
T 3lq0_A          205 IDLTDPYDKAHMLQTDANQINNLYTNEC  232 (235)
T ss_dssp             CCCCCGGGCSSCCHHHHHHHHHHTHHHH
T ss_pred             cccccccccCCCCHHHHHHHHHhcCCCC
Confidence            2 34899999999999999999999964

>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A*

Probab=99.85  E-value=1.7e-22  Score=207.83  Aligned_cols=105  Identities=34%  Similarity=0.517  Sum_probs=91.3

Q ss_pred             CCccCccccccHHHHHHHHHHhcCCCCcccCcccccccCCCCcccccccCCCCCCcccccccccccCCCceeeeeCCCCC
Q psy2949         191 EDTMGQRDAMSRVDLAKLNRLYKCPKNYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGA  270 (367)
Q Consensus       191 ~~~IG~r~~lS~~D~~~in~lY~C~~nI~~g~~~Nf~~~~~~~~~~~~~pYDy~SiMhY~~~~fs~~~~~~ti~~~~~~~  270 (367)
                      .|++|..|+.|+.|++....+.  .+||.++.+.||+|++...++++++||||+|||||++++||+++. +||+|+.+..
T Consensus       133 ~HALGf~HEqsR~DRD~yV~I~--~~NI~~~~~~nF~k~~~~~~~~~g~pYDy~SVMHY~~~aFs~~~~-~Ti~~~~~~~  209 (592)
T 4gwm_A          133 LHALGFWHEQSRSDRDDYVRIM--WDRILSGREHNFNTYSDDISDSLNVPYDYTSVMHYSKTAFQNGTE-PTIVTRISDF  209 (592)
T ss_dssp             HHHHTCCCSTTSTTGGGTEEEC--GGGBCTTCGGGGCCCCC------CCCCCTTCTTSCCTTTTBSSSS-CSEEESSGGG
T ss_pred             HHHhcccccccCcCccceEEEe--hhhcCcchhhHHhhcCccccccCCCCcCCCccCcCCCCccccCCc-ceEEecCCCc
Confidence            3789999999999999966665  589999999999999998899999999999999999999999876 8999998888


Q ss_pred             ccccccccCCCHHHHHHHhhhccCCCCc
Q psy2949         271 EDTMGQRDAMSRVDLAKLNRLYKCPKNY  298 (367)
Q Consensus       271 ~~~~gqr~~~s~~D~~~in~~Y~C~~~~  298 (367)
                      +.+||||.+||+.||++||+||+|+.++
T Consensus       210 ~~~iGqr~~lS~~Di~~iN~lY~C~~~~  237 (592)
T 4gwm_A          210 EDVIGQRMDFSDSDLLKLNQLYNCSSSL  237 (592)
T ss_dssp             TTTTTCCSSCCHHHHHHHHHHTTCSCCS
T ss_pred             cCCccccccCcHHHHHHHHHhcCCCCcc
Confidence            8899999999999999999999999764

>1i76_A MMP-8;, neutrophil collagenase; hydrolase, complex (metalloprotease/inhibitor); HET: BSI; 1.20A {Homo sapiens} SCOP: d.92.1.11 PDB: 1i73_A* 1jao_A* 1jap_A 1jaq_A* 1jj9_A* 1mmb_A* 1zp5_A* 1zs0_A* 1zvx_A* 3dng_A* 3dpe_A* 3dpf_A* 1kbc_A* 1jan_A* 1bzs_A* 1mnc_A* 2oy2_A 1a86_A* 1jh1_A* 1a85_A ...

Probab=99.82  E-value=2.5e-19  Score=156.59  Aligned_cols=103  Identities=14%  Similarity=0.105  Sum_probs=74.9

Q ss_pred             cCCCCcCCCeeEEEEcCCC---CC-HHHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEEe--cCC-CCccCCCCCCC---
Q psy2949          19 YQAQLWPDKTVYYNFEDSE---FT-IYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFR--NTG-FGCASPVGYFP---   88 (367)
Q Consensus        19 ~~~~~Wp~~~VpY~~~~~~---~~-~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i~--~~~-~gc~S~vG~~~---   88 (367)
                      ....+||+.+|+|.| ...   ++ +.++++|++||+.|++.+||+|++++.....|+|.  ... ..|++++|..+   
T Consensus         4 ~~~~~W~~~~ltY~i-~~~~~~~~~~~~~~~i~~A~~~W~~~t~l~F~e~~~~~adI~I~f~~~~~g~~~~fdG~~g~la   82 (163)
T 1i76_A            4 PGNPKWERTNLTYRI-RNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAFYQRDHGDNSPFDGPNGILA   82 (163)
T ss_dssp             TTCCCCSCSEEEEEE-CCCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECSSSCCSEEEEEECSCCSSSCCCCSSSSCCE
T ss_pred             CCCCccCCcEEEEEE-eCCCCCCCHHHHHHHHHHHHHHHhcCCCcceEEecccccceEEEEeecCCCCcccccCCCCeEE
Confidence            356899999999999 443   23 57899999999999999999999997544445443  223 34688888743   


Q ss_pred             ----------CCcccc---cccCC-CcccccchhHHHHHhhhcccccc
Q psy2949          89 ----------IGTGID---IFLGG-RVCFLKGKIQHEILHSLGFWHEH  122 (367)
Q Consensus        89 ----------g~q~i~---~~~l~-~~c~~~g~i~HEigHALG~~HEh  122 (367)
                                +...++   .++++ .+|...++++|||||||||.|++
T Consensus        83 ~a~~p~~~~~g~~~~d~~~~w~~~~~g~~~~~v~~HE~GHalGl~H~~  130 (163)
T 1i76_A           83 HAFQPGQGIGGDAHFDAEETWTNTSANYNLFLVAAHEFGHSLGLAHSS  130 (163)
T ss_dssp             EECCSSSTTTTCEEEETTSCCBSSSSSCBHHHHHHHHHHHHHTBCCCS
T ss_pred             EEecCCCCccceEEeCCccccccCcccchhhhhhHHHhhhhhcCCCCC
Confidence                      112222   12233 46666799999999999999997

>2y6d_A Matrilysin; hydrolase; HET: TQJ; 1.60A {Homo sapiens} PDB: 2ddy_A* 1mmq_A* 1mmp_A* 1mmr_A* 2y6c_A*

Probab=99.81  E-value=1.7e-19  Score=159.29  Aligned_cols=141  Identities=21%  Similarity=0.201  Sum_probs=94.7

Q ss_pred             cccCCCCcCCCeeEEEEcCC---CCC-HHHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEE--ecCC-CCccCCCCCCC-
Q psy2949          17 VLYQAQLWPDKTVYYNFEDS---EFT-IYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRF--RNTG-FGCASPVGYFP-   88 (367)
Q Consensus        17 ~~~~~~~Wp~~~VpY~~~~~---~~~-~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i--~~~~-~gc~S~vG~~~-   88 (367)
                      +.....+|++.+|+|.| ..   .++ +.++++|++||+.|++.+||+|++++....-|+|  .... .+|+++.|..+ 
T Consensus         4 ~~~~~~~W~~~~ltY~i-~~~~~~l~~~~~~~~i~~A~~~W~~vt~l~F~ev~~~~adI~I~f~~~~hgd~~~fdG~~g~   82 (174)
T 2y6d_A            4 LFPNSPKWTSKVVTYRI-VSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGNT   82 (174)
T ss_dssp             BCTTCCCCCSSEEEEEE-CCCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECCSSCCSEEEEEECSCCSSSCCCCSSSSC
T ss_pred             eCCCCCccCCCEEEEEE-eCCCCCCCHHHHHHHHHHHHHHHHhccCeeEEEecCCCccEEEEEeecCCCCccceeCCCCe
Confidence            33456899999999999 43   233 4689999999999999999999998743333433  3222 45899888643 


Q ss_pred             ------------CCcccc---cccCC--CcccccchhHHHHHhhhcccccccCCCCCcceEEeeCCcCCCCCcccccCCC
Q psy2949          89 ------------IGTGID---IFLGG--RVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPT  151 (367)
Q Consensus        89 ------------g~q~i~---~~~l~--~~c~~~g~i~HEigHALG~~HEh~rpDRD~yv~I~~~ni~~~~~~nf~k~~~  151 (367)
                                  |...++   .++++  .+|...++++|||||||||.|++                             
T Consensus        83 la~a~~P~~~~~g~i~fd~~e~w~~~~~~g~~~~~~~~HE~gH~lGl~h~~-----------------------------  133 (174)
T 2y6d_A           83 LAHAFAPGTGLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSS-----------------------------  133 (174)
T ss_dssp             CEEECCSSSTTTTCEEEETTSCEESSSSSSEEHHHHHHHHHHHHHTBCCCS-----------------------------
T ss_pred             eEEeecCCCCccceEEeccccccccCCCCCceeeehhhHHhHhhhcCCCCC-----------------------------
Confidence                        211111   11222  46777799999999999999987                             


Q ss_pred             CcccccCCcCCCCCCcCcccceeccCCCcceeeeCCCCCCCccCccccccHHHHHHHHHHhcCCC
Q psy2949         152 GSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKCPK  216 (367)
Q Consensus       152 ~~~~~~g~~YD~~SIMhY~~~~fs~~~~~~ti~~~~~~~~~~IG~r~~lS~~D~~~in~lY~C~~  216 (367)
                                |+.||| |+...+.   .        +       ....|+..|+..|+.||+|+.
T Consensus       134 ----------~~~svM-~~~~~~~---~--------~-------~~~~l~~~Di~~i~~lYg~~~  169 (174)
T 2y6d_A          134 ----------DPNAVM-YPTYGNG---D--------P-------QNFKLSQDDIKGIQKLYGKRS  169 (174)
T ss_dssp             ----------CTTSTT-SSCC-------------------------CCCCHHHHHHHHHHC----
T ss_pred             ----------CCCcEe-cccccCC---C--------c-------cCCCCCHHHHHHHHHHhCcCC
Confidence                      356899 5544321   0        0       123589999999999998753

>1hv5_A Stromelysin 3; inhibition, phosphinic inhibitor, hydrolase; HET: CPS RXP; 2.60A {Mus musculus} SCOP: d.92.1.11

Probab=99.81  E-value=1.4e-19  Score=158.49  Aligned_cols=135  Identities=18%  Similarity=0.099  Sum_probs=94.2

Q ss_pred             CCCcCCCeeEEEEcCC--CCC-HHHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEEe--cCCCCc-cCCCCCCC------
Q psy2949          21 AQLWPDKTVYYNFEDS--EFT-IYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFR--NTGFGC-ASPVGYFP------   88 (367)
Q Consensus        21 ~~~Wp~~~VpY~~~~~--~~~-~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i~--~~~~gc-~S~vG~~~------   88 (367)
                      ..+||+.+|+|.|...  .++ +..++.|++||+.|++.+||+|++++....-|+|.  ....|| +++.|..+      
T Consensus         6 ~~~W~~~~ltY~i~~~~~~~~~~~~~~~i~~A~~~W~~~t~l~F~e~~~~~adI~i~f~~~~~gd~~~fdg~~g~la~A~   85 (165)
T 1hv5_A            6 GGRWEKTDLTYRILRFPWQLVREQVRQTVAEALQVWSEVTPLTFTEVHEGRADIMIDFARYWHGDNLPFDGPGGILAHAF   85 (165)
T ss_dssp             TTEEEECEEEEEECSCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECSSSBCSEEEEEECSCSSSSCCCCSSSSCCEEEE
T ss_pred             CCCCCCCeEEEEEeCCCCCCCHHHHHHHHHHHHHHHHcccCeeEEEecCCCccEEEEEeecccCCCCcccCCcceEEEee
Confidence            3589999999999321  345 45688999999999999999999997543445443  333455 56676521      


Q ss_pred             -------CCcccc---cccCC--CcccccchhHHHHHhhhcccccccCCCCCcceEEeeCCcCCCCCcccccCCCCcccc
Q psy2949          89 -------IGTGID---IFLGG--RVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRT  156 (367)
Q Consensus        89 -------g~q~i~---~~~l~--~~c~~~g~i~HEigHALG~~HEh~rpDRD~yv~I~~~ni~~~~~~nf~k~~~~~~~~  156 (367)
                             |...++   .++++  .+|...++++|||||||||.|++.                                 
T Consensus        86 ~P~~~~~g~~~~d~~~~w~~~~~~g~~~~~v~~HEiGHaLGL~H~~~---------------------------------  132 (165)
T 1hv5_A           86 FPKTHREGDVHFDYDETWTIGDNQGTDLLQVAAHEFGHVLGLQHTTA---------------------------------  132 (165)
T ss_dssp             CCTTSSSEEEEEETTSCEESSCSSSEEHHHHHHHHHHHHTTCCCCSC---------------------------------
T ss_pred             CCCCCcCccEEEccccceecCCccCchhhhhHHHHhHhhhCCCCCCC---------------------------------
Confidence                   111111   22233  467778999999999999999983                                 


Q ss_pred             cCCcCCCCCCcCcccceeccCCCcceeeeCCCCCCCccCccccccHHHHHHHHHHhcCC
Q psy2949         157 FGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKCP  215 (367)
Q Consensus       157 ~g~~YD~~SIMhY~~~~fs~~~~~~ti~~~~~~~~~~IG~r~~lS~~D~~~in~lY~C~  215 (367)
                            +.|||+|....                     +....|+..|+..|+.||+|+
T Consensus       133 ------~~svM~~~~~~---------------------~~~~~l~~~Di~~iq~LYg~~  164 (165)
T 1hv5_A          133 ------AKALMSPFYTF---------------------RYPLSLSPDDRRGIQHLYGRP  164 (165)
T ss_dssp             ------TTSTTCSSCCC---------------------CSSCCCCHHHHHHHHHHCC--
T ss_pred             ------CCceecccccC---------------------CCCCCCCHHHHHHHHHHhCCC
Confidence                  26999985420                     112468999999999999764

>1slm_A Stromelysin-1; hydrolase, metalloprotease, fibroblast, collagen degradation; 1.90A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11

Probab=99.79  E-value=1.2e-18  Score=162.77  Aligned_cols=103  Identities=17%  Similarity=0.082  Sum_probs=77.4

Q ss_pred             CCCCcCCCeeEEEEcCCC---CC-HHHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEEec--C-CCCccCCCCCCC----
Q psy2949          20 QAQLWPDKTVYYNFEDSE---FT-IYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRN--T-GFGCASPVGYFP----   88 (367)
Q Consensus        20 ~~~~Wp~~~VpY~~~~~~---~~-~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i~~--~-~~gc~S~vG~~~----   88 (367)
                      ...+|++.+|+|.| ...   ++ +.++++|++||+.|+..+||+|++++.....|+|..  . ..+|++++|..+    
T Consensus        88 ~~~kW~~~~ltY~i-~~~~~~l~~~~~~~~i~~A~~~W~~vt~l~F~e~~~~~adI~I~f~~~~hgd~~~fdG~~g~lah  166 (255)
T 1slm_A           88 GIPKWRKTHLTYRI-VNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVLAH  166 (255)
T ss_dssp             CCSSCSCSEEEEEE-CCCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECSSSCCSEEEEEECSCCSSSCCCCSSSSBCEE
T ss_pred             CCCcCCCCccceEe-ccCCCCCCHHHHHHHHHHHHHHHHhcCCeeEEEecCCCcceeeeeeccCCCCccceeCCCCeeee
Confidence            45799999999999 432   34 578999999999999999999999985566666642  2 246899988743    


Q ss_pred             ---------CCcccc---cccCC-CcccccchhHHHHHhhhccccccc
Q psy2949          89 ---------IGTGID---IFLGG-RVCFLKGKIQHEILHSLGFWHEHT  123 (367)
Q Consensus        89 ---------g~q~i~---~~~l~-~~c~~~g~i~HEigHALG~~HEh~  123 (367)
                               |...++   .++++ .+|...++++|||||||||.|+|.
T Consensus       167 A~~P~~~~~G~ihfd~~e~w~~~~~g~~l~~va~HEiGHaLGL~Hs~~  214 (255)
T 1slm_A          167 AYAPGPGINGDAHFDDDEQWTKDTTGTNLFLVAAHEIGHSLGLFHSAN  214 (255)
T ss_dssp             ECCSSSTTTTCEEEETTSCEESSSSSEEHHHHHHHHHHHHTTCCCCSC
T ss_pred             eecCCCCcCceEEeCCCCccccCCceeeehhhhHHHHHHHhcCCCCCC
Confidence                     111111   12233 578778999999999999999983

>2xs4_A Karilysin protease; hydrolase, bacterial MMP, virulence factor, metalloprotease, dependent, peptidase; 1.70A {Tannerella forsythia} PDB: 2xs3_A

Probab=99.77  E-value=4.1e-18  Score=149.37  Aligned_cols=103  Identities=17%  Similarity=0.112  Sum_probs=74.1

Q ss_pred             CCCCcCCCeeEEEEcCCC---CC-HHHHHHHHHHHHHHHHcCCcEEEEcC-CCCceEEE--ecCC-CCccCCCCCCC---
Q psy2949          20 QAQLWPDKTVYYNFEDSE---FT-IYEKTLVENAIQDLRMHTCVRFVPRT-NQDTYLRF--RNTG-FGCASPVGYFP---   88 (367)
Q Consensus        20 ~~~~Wp~~~VpY~~~~~~---~~-~~~~~~I~~A~~~w~~~tci~F~~~~-~~~~~I~i--~~~~-~gc~S~vG~~~---   88 (367)
                      ...+|++.+|+|.| ...   ++ +.++++|++||+.|++.+||+|++++ .....|+|  .... ..|+++.|..+   
T Consensus         4 ~~~~W~~~~lty~i-~~~~~~l~~~~~~~~i~~A~~~W~~~~~l~F~~v~~~~~adI~I~f~~~~~gd~~~~dG~~g~la   82 (167)
T 2xs4_A            4 QGSKWNKTTLKYYI-YNSSSHLTTTERENAIRSAFALWSDKSTLSFIQVYNPNQADIKIKWEKGNHGDGYPFDGNTGILA   82 (167)
T ss_dssp             CSCCCSSSEEEEEE-CCCCCSSCHHHHHHHHHHHHHHHHHTSSCEEEECSCGGGCSEEEEEECSCCSSSCCTTSSSCCSE
T ss_pred             cCCcCCCCeEEEEE-eCCCCCCCHHHHHHHHHHHHHHHhccCCceEEEeCCCCCCcEEEEEeccCCCCCcceecCCCeEE
Confidence            56799999999999 432   33 67899999999999999999999985 33334444  3322 35788887632   


Q ss_pred             -------------CCcccc---cccCC-CcccccchhHHHHHhhhccccccc
Q psy2949          89 -------------IGTGID---IFLGG-RVCFLKGKIQHEILHSLGFWHEHT  123 (367)
Q Consensus        89 -------------g~q~i~---~~~l~-~~c~~~g~i~HEigHALG~~HEh~  123 (367)
                                   |...++   .++++ .+|...++++|||||||||.|++.
T Consensus        83 ~a~~P~~~~~~~~g~~~fd~~e~w~~~~~g~~~~~v~~HEiGHaLGL~H~~~  134 (167)
T 2xs4_A           83 HAFYPPPAGGNYAGHLHFDDDENWSINGSGIDLITVAAHEIGHLLGIEHSNV  134 (167)
T ss_dssp             EECCSTTTTGGGTTEEEEETTSCEESSSSSEEHHHHHHHHHHHHHTBCCCSC
T ss_pred             EEECCCCccCcccceEEECCccccccCCCccchhhhHHHHHHHhhcCCCCCC
Confidence                         111111   12334 577777999999999999999983

>1y93_A Macrophage metalloelastase; matrix metalloproteinase, MMP12, complex (elastase inhibitor), acetohydroxamic acid, hydrola; 1.03A {Homo sapiens} SCOP: d.92.1.11 PDB: 1rmz_A 1ycm_A* 1z3j_A* 2hu6_A* 2oxu_A 2oxw_A 2oxz_A 3lik_A* 3lil_A* 3lir_A* 3ljg_A* 1os9_A 1os2_A 3f17_A* 3ehy_A* 3ehx_A* 3f15_A* 3f16_A* 3f18_A* 3f19_A* ...

Probab=99.77  E-value=3.7e-18  Score=148.58  Aligned_cols=102  Identities=17%  Similarity=0.098  Sum_probs=73.7

Q ss_pred             CCCcCCCeeEEEEcCC---CCC-HHHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEE--ecCC-CCccCCCCCCC-----
Q psy2949          21 AQLWPDKTVYYNFEDS---EFT-IYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRF--RNTG-FGCASPVGYFP-----   88 (367)
Q Consensus        21 ~~~Wp~~~VpY~~~~~---~~~-~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i--~~~~-~gc~S~vG~~~-----   88 (367)
                      ..+||+.+|+|.| ..   .++ +.++++|++||+.|++.+||+|++++.....|+|  .... ..|+++.|..+     
T Consensus         2 g~kW~~~~ltY~i-~~~~~~l~~~~~~~~i~~A~~~W~~~t~l~F~e~~~~~adI~I~f~~~~~gd~~~fdG~~g~la~a   80 (159)
T 1y93_A            2 GPVWRKHYITYRI-NNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGILAHA   80 (159)
T ss_dssp             CCCCSSSEEEEEE-CCCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECSSSCCSEEEEEECSCCSSSCCCCSSSSCCEEE
T ss_pred             CCcccCCEEEEEE-eCCCCCCCHHHHHHHHHHHHHHHhccCCceEEEecCCCccEEEEEEecccCCcccccCCCCeEEEE
Confidence            3689999999999 43   244 5789999999999999999999999754444444  3323 34788888643     


Q ss_pred             --------CCcccc---cccCC-CcccccchhHHHHHhhhccccccc
Q psy2949          89 --------IGTGID---IFLGG-RVCFLKGKIQHEILHSLGFWHEHT  123 (367)
Q Consensus        89 --------g~q~i~---~~~l~-~~c~~~g~i~HEigHALG~~HEh~  123 (367)
                              |...++   .++++ .+|...++++|||||||||.|++.
T Consensus        81 ~~P~~~~~g~~~fd~~~~w~~~~~g~~~~~~~~HE~GH~lGl~H~~~  127 (159)
T 1y93_A           81 FGPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSD  127 (159)
T ss_dssp             CCSCSTTTTCEEEETTSCEESSSSSEEHHHHHHHHHHHHTTCCCCSC
T ss_pred             ecCCCCcCceEEECCccccccCcccchhhhhhhhhhhhhhcCCCCCC
Confidence                    111121   11223 467777999999999999999974

>3ayu_A 72 kDa type IV collagenase; protease, hydrolase-hydrolase inhibitor complex; 2.00A {Homo sapiens} PDB: 1qib_A 1hov_A*

Probab=99.75  E-value=1.5e-17  Score=145.79  Aligned_cols=104  Identities=15%  Similarity=0.088  Sum_probs=75.1

Q ss_pred             cCCCCcCCCeeEEEEcCCC---CC-HHHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEEe--cCCCCc-cCCCCCCC---
Q psy2949          19 YQAQLWPDKTVYYNFEDSE---FT-IYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFR--NTGFGC-ASPVGYFP---   88 (367)
Q Consensus        19 ~~~~~Wp~~~VpY~~~~~~---~~-~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i~--~~~~gc-~S~vG~~~---   88 (367)
                      ....+|++.+|+|.| ...   ++ +.++++|++||+.|++.+||+|++++.....|+|.  ....|| +++.|..+   
T Consensus         5 ~~~~~W~~~~lty~i-~~~~~~l~~~~~~~~i~~A~~~W~~vt~l~F~ev~~~~adI~I~f~~~~~gd~~~fdG~~g~la   83 (167)
T 3ayu_A            5 PRKPKWDKNQITYRI-IGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLA   83 (167)
T ss_dssp             TTCCCCSSSEEEEEE-CCCCTTSCHHHHHHHHHHHHHHHHTSSSCEEEECSSSCCSEEEEEECSSCSSSCCCCSSSSCCE
T ss_pred             CCCCccCCceEEEEE-eCCCCCCCHHHHHHHHHHHHHHHhcCCCeeEEEecCCCceEEEEEeccCCCCcccccCCCceeE
Confidence            356799999999999 432   23 68899999999999999999999998545555543  333454 56777532   


Q ss_pred             ----------CCcccc---cccCC--CcccccchhHHHHHhhhccccccc
Q psy2949          89 ----------IGTGID---IFLGG--RVCFLKGKIQHEILHSLGFWHEHT  123 (367)
Q Consensus        89 ----------g~q~i~---~~~l~--~~c~~~g~i~HEigHALG~~HEh~  123 (367)
                                |...++   .++++  .+|...++++|||||||||.|++.
T Consensus        84 ~a~~P~~~~~G~~~fd~~e~w~~~~~~g~~~~~~~~HE~gH~lGl~H~~~  133 (167)
T 3ayu_A           84 HAFAPGTGVGGDSHFDDDELWTLGKGVGYSLFLVAAHAFGHAMGLEHSQD  133 (167)
T ss_dssp             EEECSSSTTTTCEEEETTSCEESSCSSSEEHHHHHHHHHHHHTTEECCSC
T ss_pred             EEECCCCCcCCceEEcceeeeecCCCcCccceeehhhhhHHhccCCCCCC
Confidence                      111111   12233  567777999999999999999985

>2ovx_A Matrix metalloproteinase-9 (EC 3.4.24.35) (MMP-9) type IV collagenase) (92 kDa gelatinase)...; S1-prime pocket, hydrolase-hydrola inhibitor complex; HET: 4MR; 2.00A {Homo sapiens} SCOP: d.92.1.11 PDB: 2ovz_A* 2ow0_A* 2ow1_A* 2ow2_A* 1gkd_A* 1gkc_A*

Probab=99.75  E-value=2.1e-17  Score=143.77  Aligned_cols=103  Identities=16%  Similarity=0.110  Sum_probs=73.6

Q ss_pred             CCCCcCCCeeEEEEcCC---CCC-HHHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEE--ecCCCCc-cCCCCCCC----
Q psy2949          20 QAQLWPDKTVYYNFEDS---EFT-IYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRF--RNTGFGC-ASPVGYFP----   88 (367)
Q Consensus        20 ~~~~Wp~~~VpY~~~~~---~~~-~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i--~~~~~gc-~S~vG~~~----   88 (367)
                      ...+|++.+|+|.| ..   .++ +.++++|++||+.|++.+||+|++++....-|+|  .....|| +++.|..+    
T Consensus         3 ~~~~W~~~~lty~i-~~~~~~l~~~~~~~~i~~A~~~W~~~~~l~F~e~~~~~adI~I~f~~~~~gd~~~fdG~~g~la~   81 (159)
T 2ovx_A            3 GDLKWHHHNITYWI-QNYSEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGLLAH   81 (159)
T ss_dssp             CSCCCSCSEEEEEE-CCCCTTSCHHHHHHHHHHHHHHHHTSSSCEEEECSSTTSSEEEEEECSSCSSSCCCCSSSSCCEE
T ss_pred             CCCccCCceEEEEE-eCCCCCCCHHHHHHHHHHHHHHHHccCCeeEEEecCCCCceEEEEeeccCCCCccccCCCCeEEE
Confidence            35789999999999 43   223 4689999999999999999999999743444444  3333465 56777532    


Q ss_pred             ---------CCcccc---cccCC--CcccccchhHHHHHhhhccccccc
Q psy2949          89 ---------IGTGID---IFLGG--RVCFLKGKIQHEILHSLGFWHEHT  123 (367)
Q Consensus        89 ---------g~q~i~---~~~l~--~~c~~~g~i~HEigHALG~~HEh~  123 (367)
                               |...++   .++++  .+|...++++|||||||||.|++.
T Consensus        82 a~~P~~~~~g~~~fd~~e~w~~~~~~g~~~~~va~HEiGHaLGL~Hs~~  130 (159)
T 2ovx_A           82 AFPPGPGIQGDAHFDDDELWSLGKGQGYSLFLVAAHQFGHALGLDHSSV  130 (159)
T ss_dssp             ECCSSSTTTTCEEEETTSCEECSSSSSEEHHHHHHHHHHHHTTCCCCSC
T ss_pred             EEcCCCCccceEEEccccceecCCCcccchhhhhhhhhhhhhcCCCCCC
Confidence                     211222   12233  577777999999999999999984

>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*

Probab=99.69  E-value=2.4e-16  Score=158.34  Aligned_cols=136  Identities=20%  Similarity=0.259  Sum_probs=96.6

Q ss_pred             cCCCCcCCCeeEEEEcCC---CCC-HHHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEE--ecC-CCCccCCCCCCC---
Q psy2949          19 YQAQLWPDKTVYYNFEDS---EFT-IYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRF--RNT-GFGCASPVGYFP---   88 (367)
Q Consensus        19 ~~~~~Wp~~~VpY~~~~~---~~~-~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i--~~~-~~gc~S~vG~~~---   88 (367)
                      ....+|++.+|+|.| ..   .++ +.++++|++||+.|++.+||+|++++.....|+|  ... ..+|+++.|..+   
T Consensus        85 ~~~~~W~~~~ltY~i-~~~~~~l~~~~~~~~i~~A~~~W~~vt~l~F~ev~~~~adI~I~f~~~~hgd~~~fdG~~g~la  163 (450)
T 1su3_A           85 EGNPRWEQTHLTYRI-ENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNLA  163 (450)
T ss_dssp             ---CCCSSSEEEEEE-CCCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECSSSCCSEEEEEECSCCSSSCCCCSSSSBCE
T ss_pred             cCCCcCCCCcceEEe-cCCCCCCCHHHHHHHHHHHHHHHhccCceeEEEecCCCCCEEEEEeccCCCCccceecCCCeee
Confidence            356799999999999 43   233 5789999999999999999999999744344444  322 245888888643   


Q ss_pred             ----------CCcccc---cccCC-CcccccchhHHHHHhhhcccccccCCCCCcceEEeeCCcCCCCCcccccCCCCcc
Q psy2949          89 ----------IGTGID---IFLGG-RVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSV  154 (367)
Q Consensus        89 ----------g~q~i~---~~~l~-~~c~~~g~i~HEigHALG~~HEh~rpDRD~yv~I~~~ni~~~~~~nf~k~~~~~~  154 (367)
                                |...++   .++++ .+|...++++|||||||||.|++                                
T Consensus       164 hA~~P~~~~~g~~hfd~~e~w~~~~~g~~l~~v~~HE~GH~lGl~H~~--------------------------------  211 (450)
T 1su3_A          164 HAFQPGPGIGGDAHFDEDERWTNNFREYNLHRVAAHELGHSLGLSHST--------------------------------  211 (450)
T ss_dssp             EECCSSSTTTTCEEEETTSCCBSSSSSCBHHHHHHHHHHHHTTCCCCS--------------------------------
T ss_pred             eeecCCCCcCcceEeccccccccCcceeehhchhhhHHHHhccCCCCC--------------------------------
Confidence                      212221   22233 46666799999999999999997                                


Q ss_pred             cccCCcCCCCCCcCcccceeccCCCcceeeeCCCCCCCccCccccccHHHHHHHHHHhcCC
Q psy2949         155 RTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKCP  215 (367)
Q Consensus       155 ~~~g~~YD~~SIMhY~~~~fs~~~~~~ti~~~~~~~~~~IG~r~~lS~~D~~~in~lY~C~  215 (367)
                             |+.||| |+...++                   + ...|+..|+..|+.+|++.
T Consensus       212 -------~~~svM-~p~y~~~-------------------~-~~~l~~~Di~~i~~lYg~~  244 (450)
T 1su3_A          212 -------DIGALM-YPSYTFS-------------------G-DVQLAQDDIDGIQAIYGRS  244 (450)
T ss_dssp             -------CTTSTT-SSBCCCC-------------------S-SCCCCHHHHHHHHHHHCCC
T ss_pred             -------CCccee-ccccccC-------------------C-cCCCCHHHHHHHHHHhCCC
Confidence                   456899 6655321                   1 2357899999999999874

>1rm8_A MMP-16, matrix metalloproteinase-16, MT3-MMP; membrane type - matrix metalloproteinase, batimastat, hydroxamate inhibitor, protease, hydrolase; HET: BAT; 1.80A {Homo sapiens} SCOP: d.92.1.11

Probab=99.68  E-value=6.4e-16  Score=135.64  Aligned_cols=100  Identities=20%  Similarity=0.156  Sum_probs=70.5

Q ss_pred             CCcCCCeeEEEEcCCC---C-CHHHHHHHHHHHHHHHHcCCcEEEEcC-------CCCceEEEe--cCCCC-ccCCCCCC
Q psy2949          22 QLWPDKTVYYNFEDSE---F-TIYEKTLVENAIQDLRMHTCVRFVPRT-------NQDTYLRFR--NTGFG-CASPVGYF   87 (367)
Q Consensus        22 ~~Wp~~~VpY~~~~~~---~-~~~~~~~I~~A~~~w~~~tci~F~~~~-------~~~~~I~i~--~~~~g-c~S~vG~~   87 (367)
                      .+|++.+|+|.| ...   + .+.++++|++||+.|++.+||+|++++       .....|+|.  ....| |+++.|..
T Consensus         2 ~kW~~~~lTY~i-~~~~~~~~~~~~~~~i~~A~~~W~~v~~l~F~ev~~~~~~~~~~~adI~i~f~~~~~gd~~~fdG~~   80 (169)
T 1rm8_A            2 QKWQHKHITYSI-KNVTPKVGDPETRKAIRRAFDVWQNVTPLTFEEVPYSELENGKRDVDITIIFASGFHGDSSPFDGEG   80 (169)
T ss_dssp             CCCSSSEEEEEE-CCCCTTTCHHHHHHHHHHHHHHHHTTSSCEEEECCTTCCCSSSCCCSEEEEEESSCCSSSCCCCSSS
T ss_pred             CCCCCCEEEEEE-ECCCCCCCHHHHHHHHHHHHHHHHhcCCceeEEeccccccCCCCCCCEEEEEeeccccccceecCCC
Confidence            589999999999 433   2 257899999999999999999999986       234445553  22233 56777753


Q ss_pred             C-------------CCcccc---cccCC----CcccccchhHHHHHhhhcccccc
Q psy2949          88 P-------------IGTGID---IFLGG----RVCFLKGKIQHEILHSLGFWHEH  122 (367)
Q Consensus        88 ~-------------g~q~i~---~~~l~----~~c~~~g~i~HEigHALG~~HEh  122 (367)
                      +             |...++   .+.++    .+|....+++|||||||||.|++
T Consensus        81 g~la~a~~P~~g~~g~~~fd~~e~w~~~~~~~~g~~~~~~~~he~gh~lgl~h~~  135 (169)
T 1rm8_A           81 GFLAHAYFPGPGIGGDTHFDSDEPWTLGNPNHDGNDLFLVAVHELGHALGLEHSN  135 (169)
T ss_dssp             SCCEEECCSCSTTTTCEEEETTSCEESSCCSSSSEEHHHHHHHHHHHHHTCCCCS
T ss_pred             CEEEEEEeecCCccceEEEcCCCcceecCCCCccceeeeehhhhhhhhcCCCCCC
Confidence            2             111121   12222    46666799999999999999974

>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A

Probab=99.60  E-value=4.7e-15  Score=145.32  Aligned_cols=101  Identities=17%  Similarity=0.075  Sum_probs=73.3

Q ss_pred             CCcCCCeeEEEEcCCC---CC-HHHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEEe--cCC-CCccCCCCCCC------
Q psy2949          22 QLWPDKTVYYNFEDSE---FT-IYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFR--NTG-FGCASPVGYFP------   88 (367)
Q Consensus        22 ~~Wp~~~VpY~~~~~~---~~-~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i~--~~~-~gc~S~vG~~~------   88 (367)
                      .+|++.+|+|.| ...   ++ +.++++|++||+.|++.+||+|++++.....|+|.  ... ..|+++.|..+      
T Consensus         2 ~kW~~~~lty~i-~~~~~~~~~~~~~~~i~~A~~~W~~vt~l~F~ev~~~~adI~I~f~~~~hgd~~~fdG~~g~laha~   80 (365)
T 3ba0_A            2 PVWRKHYITYRI-NNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILVVFARGAHGDDHAFDGKGGILAHAF   80 (365)
T ss_dssp             CCCSCSCEEEEE-CCCCTTCCSHHHHHHHHHHHHHHHTTSSCCEEECSSSCCSEEEEEECSSCSSSSCCCSSSSCCEEEC
T ss_pred             CCCcCcEEEEEE-eCCCCCCCHHHHHHHHHHHHHHHhcccCeeEEEecCCCCCEEEEEeccCCCCcccccCCCCeEEEee
Confidence            589999999999 432   22 58999999999999999999999998545555553  222 34788887632      


Q ss_pred             -------CCcccc---cccCC-CcccccchhHHHHHhhhccccccc
Q psy2949          89 -------IGTGID---IFLGG-RVCFLKGKIQHEILHSLGFWHEHT  123 (367)
Q Consensus        89 -------g~q~i~---~~~l~-~~c~~~g~i~HEigHALG~~HEh~  123 (367)
                             |...++   .++++ .+|...++++|||||||||.|++.
T Consensus        81 ~P~~~~~g~~hfd~~e~w~~~~~g~~~~~~~~HE~gH~lGl~h~~~  126 (365)
T 3ba0_A           81 GPGSGIGGDAHFDEDEFWTTHSGGTNLFLTAVHEIGHSLGLGHSSD  126 (365)
T ss_dssp             CSCSSSSSCEEEETTSCEESSSSSEESSHHHHHHHHHHHTCCCCSC
T ss_pred             cCCCCccceEEeCCCCCcccCCCcccceeehhhhhhhhhcCCCCCc
Confidence                   111121   11222 467777999999999999999983

>830c_A MMP-13, MMP-13; matrix metalloprotease; HET: RS1; 1.60A {Homo sapiens} SCOP: d.92.1.11 PDB: 456c_A* 1you_A* 4a7b_A* 3tvc_A* 1eub_A* 1xuc_A* 1xud_A* 1xur_A* 2yig_A* 3elm_A* 3i7g_A* 3i7i_A* 3zxh_A* 2ow9_A* 2ozr_A* 3kek_A* 3kej_A* 3kec_A* 2d1n_A* 1fls_A* ...

Probab=99.59  E-value=1.5e-14  Score=126.80  Aligned_cols=103  Identities=17%  Similarity=0.106  Sum_probs=68.7

Q ss_pred             CCCCcCCCeeEEEEcC--CCCC-HHHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEEe--cCCCCccC-CCCCC------
Q psy2949          20 QAQLWPDKTVYYNFED--SEFT-IYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFR--NTGFGCAS-PVGYF------   87 (367)
Q Consensus        20 ~~~~Wp~~~VpY~~~~--~~~~-~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i~--~~~~gc~S-~vG~~------   87 (367)
                      ...+|++.+|+|+|..  ..++ ...+++|++||+.|++.+||+|+++......|+|.  ....||.. +-|.-      
T Consensus         6 ~~~kW~k~~LTY~I~n~t~~l~~~~v~~ai~~A~~~Ws~vt~L~F~ev~~~~AdI~I~F~~~~hgd~~~fdg~gg~lAhA   85 (168)
T 830c_A            6 RTLKWSKMNLTYRIVNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHDGIADIMISFGIKEHGDFYPFDGPSGLLAHA   85 (168)
T ss_dssp             SBCCCSSSEEEEEECSCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEEESSSCCSEEEEEECSSCSSSCCCCSSSSCCEEE
T ss_pred             CCCcCCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHHHhccCcceeeccCcccccceeecccccCCcccccCCCceeeec
Confidence            4578999999999931  1233 46788999999999999999999998555555553  33445432 33321      


Q ss_pred             -------CCCcccc---cccC-CCcccccchhHHHHHhhhcccccc
Q psy2949          88 -------PIGTGID---IFLG-GRVCFLKGKIQHEILHSLGFWHEH  122 (367)
Q Consensus        88 -------~g~q~i~---~~~l-~~~c~~~g~i~HEigHALG~~HEh  122 (367)
                             +|...++   .++. ..++....+++|||||||||.|..
T Consensus        86 f~P~~~~~G~~hfd~~e~w~~~~~g~~l~~v~~hE~Gh~lGl~h~~  131 (168)
T 830c_A           86 FPPGPNYGGDAHFDDDETWTSSSKGYNLFLVAAHEFGHSLGLDHSK  131 (168)
T ss_dssp             CCSSSTTTTCEEEETTSCEESSSSSEEHHHHHHHHHHHHTTBCCCS
T ss_pred             cCCCCCCCCceEeccccccccccCCcchhhhhhhhhcchhcCCCCC
Confidence                   1222222   1111 134445689999999999999865

>1k7i_A PROC, secreted protease C; metalloprotease, hydrolase; 1.59A {Erwinia chrysanthemi} SCOP: b.80.7.1 d.92.1.6 PDB: 1k7g_A 1k7q_A 1go8_P 3hbv_P 3hda_P 3hbu_P 1go7_P 3hb2_P

Probab=99.51  E-value=1.2e-13  Score=139.59  Aligned_cols=167  Identities=17%  Similarity=0.125  Sum_probs=101.5

Q ss_pred             ccCCCCcC-------CCeeEEEEcCC------------CCCHHHHHHHHHHHHHHHHcCCcEEEEcCC-CCceEEEecC-
Q psy2949          18 LYQAQLWP-------DKTVYYNFEDS------------EFTIYEKTLVENAIQDLRMHTCVRFVPRTN-QDTYLRFRNT-   76 (367)
Q Consensus        18 ~~~~~~Wp-------~~~VpY~~~~~------------~~~~~~~~~I~~A~~~w~~~tci~F~~~~~-~~~~I~i~~~-   76 (367)
                      .....+|+       +.+|+|.|...            .+++.+++.|++||+.|++.+||+|+|+.. ....|+|... 
T Consensus        58 ~~~~~kW~~~~~~~~~~~LTY~f~~~~~~~~~~~~~~~~ls~~~~~~i~~Af~~Ws~vt~L~F~ev~~~~~adI~f~~~~  137 (479)
T 1k7i_A           58 TRENVSWNGTNVFGKSANLTFKFLQSVSSIPSGDTGFVKFNAEQIEQAKLSLQSWSDVANLTFTEVTGNKSANITFGNYT  137 (479)
T ss_dssp             TTTCEETTEESCCSCCEEEEEEECSCCSCCTTSCBCCBCCCHHHHHHHHHHHHHHHTTBSEEEEECCTTCCCSEEEEEEC
T ss_pred             ccCCCccCCccccCCCceEEEEEeCCCCcccccccccccCCHHHHHHHHHHHHHHhcccceeEEEeCCCCCeeEEEEEec
Confidence            34567898       78999999432            147789999999999999999999999983 4567777532 


Q ss_pred             -C-CCc-------cCCCCCCC---CCccccc-----ccCCCcccccchhHHHHHhhhcccccccCCCCCcceEEeeCCcC
Q psy2949          77 -G-FGC-------ASPVGYFP---IGTGIDI-----FLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIG  139 (367)
Q Consensus        77 -~-~gc-------~S~vG~~~---g~q~i~~-----~~l~~~c~~~g~i~HEigHALG~~HEh~rpDRD~yv~I~~~ni~  139 (367)
                       . .|+       +++....+   +...++.     .....++....|++|||||||||.|+|....-+           
T Consensus       138 ~~~~g~~~gg~lAhA~~P~~g~~~g~~~~~~~~~~~~~~~~g~~~~~va~HEiGHaLGL~Hs~~~~a~~-----------  206 (479)
T 1k7i_A          138 RDASGNLDYGTQAYAYYPGNYQGAGSSWYNYNQSNIRNPGSEEYGRQTFTHEIGHALGLAHPGEYNAGE-----------  206 (479)
T ss_dssp             BCTTSCBCCSCCEEECCSSSSTTTTEEEEETTSHHHHCTTTSHHHHHHHHHHHHHHHTCCCSSSCCSSS-----------
T ss_pred             CCCCCcccccceeEeecCCCCccccceEecccccccccCCCCcccccccHHHHHHhhcCCCCCcccccc-----------
Confidence             1 222       33333221   1222221     011234555689999999999999999765311           


Q ss_pred             CCCCcccccCCCCcccccCCcCCCCCCcCcccceeccCCCcceeeeCCCCCCCccCccccccHHHHHHHHHHhcCCC
Q psy2949         140 PGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKCPK  216 (367)
Q Consensus       140 ~~~~~nf~k~~~~~~~~~g~~YD~~SIMhY~~~~fs~~~~~~ti~~~~~~~~~~IG~r~~lS~~D~~~in~lY~C~~  216 (367)
                        +...|..      ..+.......|||.|..........             .-.....+...|+..|..||..+.
T Consensus       207 --m~P~y~~------~~~~~d~~~~svMsY~~~~~~~~~~-------------~~~y~~~~~~~Di~aIQ~LYG~~~  262 (479)
T 1k7i_A          207 --GDPSYND------AVYAEDSYQFSIMSFWGENETGADY-------------NGHYGGAPMIDDIAAIQRLYGANM  262 (479)
T ss_dssp             --SCCCGGG------CSSTTCSTTTCTTCSSCGGGGTCBC-------------TTCCCCSCCHHHHHHHHHHHCBCT
T ss_pred             --cCccccc------cccccCCcceeEeecccccccCccc-------------cccccCCCccchhhhhhheecccc
Confidence              0111110      0011123456999997653210000             001123467899999999997643

>1kap_P Alkaline protease; calcium binding protein, zinc metalloprotease; 1.64A {Pseudomonas aeruginosa} SCOP: b.80.7.1 d.92.1.6 PDB: 1jiw_P 1akl_A

Probab=99.50  E-value=2.7e-13  Score=137.08  Aligned_cols=169  Identities=19%  Similarity=0.169  Sum_probs=100.2

Q ss_pred             ccCCCCcCC------CeeEEEEcCCC----------------------CCHHHHHHHHHHHHHHHHcCCcEEEEcC-CCC
Q psy2949          18 LYQAQLWPD------KTVYYNFEDSE----------------------FTIYEKTLVENAIQDLRMHTCVRFVPRT-NQD   68 (367)
Q Consensus        18 ~~~~~~Wp~------~~VpY~~~~~~----------------------~~~~~~~~I~~A~~~w~~~tci~F~~~~-~~~   68 (367)
                      .....+|++      .+|+|.|....                      +++.++++|++||+.|++.+||+|+|++ ...
T Consensus        49 ~~~~~kW~~~~~~~~~~LTYsf~~~~~~~~~~~~~~~~d~~~~~~f~~ls~~~~~~i~~Af~~Ws~vt~L~F~ev~~~~~  128 (479)
T 1kap_P           49 LREQASWQKAPGDSVLTLSYSFLTKPNDFFNTPWKYVSDIYSLGKFSAFSAQQQAQAKLSLQSWSDVTNIHFVDAGQGDQ  128 (479)
T ss_dssp             TTTCCCCCCCTTCSSEEEEEEECSSCCHHHHCGGGTCSSCSCCCCCBCCCHHHHHHHHHHHHHHHTTBSEEEEEEEESSC
T ss_pred             ccCCCCCCCCCCCCccEEEEEEECCCcccccCccccccccccccccccCCHHHHHHHHHHHHHHhcccCeeEEEcCCCCC
Confidence            345679985      48999994321                      3467999999999999999999999987 335


Q ss_pred             ceEEEec-CCCCc---cCCCCCCC----CCccccc-------ccCCCcccccchhHHHHHhhhcccccccCCCCCcceEE
Q psy2949          69 TYLRFRN-TGFGC---ASPVGYFP----IGTGIDI-------FLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRV  133 (367)
Q Consensus        69 ~~I~i~~-~~~gc---~S~vG~~~----g~q~i~~-------~~l~~~c~~~g~i~HEigHALG~~HEh~rpDRD~yv~I  133 (367)
                      ..|+|.. .+.++   +++....+    +...++.       .....++....|++|||||||||.|+|....-..+   
T Consensus       129 AdI~i~f~~g~~G~lA~A~~P~~g~~~~g~~~~~~~~~~~~~~~~~~g~~~~~va~HEIGHaLGL~Hs~~~~a~m~~---  205 (479)
T 1kap_P          129 GDLTFGNFSSSVGGAAFAFLPDVPDALKGQSWYLINSSYSANVNPANGNYGRQTLTHEIGHTLGLSHPGDYNAGEGD---  205 (479)
T ss_dssp             SSEEEEEECSCCSSSEEECCTTSCTTTTTEEEEECSSSCCTTTSCCTTSHHHHHHHHHHHHHHTCCCSSSCCTTSSC---
T ss_pred             ccEEEEEecCCCCccEEEECCCCCCccCCceEEecccccccccCCCCCcccceeehhhhhhhhccCCCCCccccccc---
Confidence            5666643 23333   33332222    2222220       01123455568999999999999999975432111   


Q ss_pred             eeCCcCCCCCcccccCCCCcccccCCcCCCCCCcCcccceeccCCCcceeeeCCCCCCCccCccccccHHHHHHHHHHhc
Q psy2949         134 LRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYK  213 (367)
Q Consensus       134 ~~~ni~~~~~~nf~k~~~~~~~~~g~~YD~~SIMhY~~~~fs~~~~~~ti~~~~~~~~~~IG~r~~lS~~D~~~in~lY~  213 (367)
                                ..|..      ..+...-...|||.|....-.  +.     ..      .-+....+...|+..|..||.
T Consensus       206 ----------p~y~~------~~~~~d~~~~svMsY~~~~~~--~~-----~~------~~~y~~~~~~~Di~aiq~lYG  256 (479)
T 1kap_P          206 ----------PTYAD------ATYAEDTRAYSVMSYWEEQNT--GQ-----DF------KGAYSSAPLLDDIAAIQKLYG  256 (479)
T ss_dssp             ----------CCGGG------CSSTTCSTTTCTTCCSCGGGG--TC-----BC------TTCCCSSCCHHHHHHHHHHHC
T ss_pred             ----------ccccc------cccccCCcceeEEeecccccC--Cc-----cc------cccccCCCCcchhhhhhcccc
Confidence                      11110      001111234599999765211  10     00      011123467899999999997


Q ss_pred             CCCCc
Q psy2949         214 CPKNY  218 (367)
Q Consensus       214 C~~nI  218 (367)
                      .+.+.
T Consensus       257 ~~~~~  261 (479)
T 1kap_P          257 ANLTT  261 (479)
T ss_dssp             BCTTT
T ss_pred             ccccc
Confidence            75433

>1g9k_A Serralysin; beta jelly roll, hydrolase; 1.96A {Pseudomonas} SCOP: b.80.7.1 d.92.1.6 PDB: 1o0q_A 1o0t_A 1om6_A 1om7_A 1om8_A 1omj_A 1h71_P

Probab=99.49  E-value=3e-13  Score=136.14  Aligned_cols=173  Identities=15%  Similarity=0.128  Sum_probs=99.3

Q ss_pred             cccCCCCcC------CCeeEEEEcCCC--------------CCHHHHHHHHHHHHHHHHcCCcEEEE--cC-CCCceEEE
Q psy2949          17 VLYQAQLWP------DKTVYYNFEDSE--------------FTIYEKTLVENAIQDLRMHTCVRFVP--RT-NQDTYLRF   73 (367)
Q Consensus        17 ~~~~~~~Wp------~~~VpY~~~~~~--------------~~~~~~~~I~~A~~~w~~~tci~F~~--~~-~~~~~I~i   73 (367)
                      +.....+|+      +.+|+|.|....              |++.++++|++||+.|++.+||+|+|  +. .....|+|
T Consensus        40 l~~~~~kW~~~~~~~~~~LTY~f~~~~~~~~~p~~~~~~~~l~~~~~~~i~~A~~~Ws~vt~L~F~e~~v~~~~~AdI~i  119 (463)
T 1g9k_A           40 LTRSGASWHDLNNDGVINLTYTFLTAPPVGYASRGLGTFSQFSALQKEQAKLSLESWADVAKVTFTEGPAARGDDGHMTF  119 (463)
T ss_dssp             HTTTCCCCCCTTCSSSEEEEEEECSSCCTTGGGGCCCSEECCCHHHHHHHHHHHHHHHTTBSEEEEESCCCC-CCEEEEE
T ss_pred             ccCCCCCCCCCcCCCCcEEEEEEecCCccccccccccccccCCHHHHHHHHHHHHHHhcccCceEEEcccCCCCCccEEE
Confidence            344567998      469999994321              36889999999999999999999999  65 34667777


Q ss_pred             ec-CCCC---ccCCCCC--CCCCcccc---cc----cCCCcccccchhHHHHHhhhcccccccCCCCCcceEEeeCCcCC
Q psy2949          74 RN-TGFG---CASPVGY--FPIGTGID---IF----LGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGP  140 (367)
Q Consensus        74 ~~-~~~g---c~S~vG~--~~g~q~i~---~~----~l~~~c~~~g~i~HEigHALG~~HEh~rpDRD~yv~I~~~ni~~  140 (367)
                      .. .+.+   .+++...  ..+...++   .+    ..+.++....|++|||||||||.|+|....-..+          
T Consensus       120 ~~fdg~~g~lA~A~~P~~~~~G~~~fd~~~~w~~~~~~~~g~~~~~va~HEiGHaLGL~Hs~~~~a~~g~----------  189 (463)
T 1g9k_A          120 ANFSASNGGAAFAYLPNSSRKGESWYLINKDYQVNKTPGEGNYGRQTLTHEIGHTLGLSHPGDYNAGNGN----------  189 (463)
T ss_dssp             EEECCGGGCSEEECCTTSTTTTEEEEECBTTBCTTTSCCTTSHHHHHHHHHHHHHHTCCCSSCCC---------------
T ss_pred             EeecCCCcceeeeecCCCCcCCceeeccccccccccccCcCccchhhhhhhhhhhhccCCCCcccccccC----------
Confidence            43 2211   2333321  11222222   10    0122444568999999999999999865432100          


Q ss_pred             CCCcccccCCCCcccccCCcCCCCCCcCcccceeccCCCcceeeeCCCCCCCccCccccccHHHHHHHHHHhcCCCC
Q psy2949         141 GHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKCPKN  217 (367)
Q Consensus       141 ~~~~nf~k~~~~~~~~~g~~YD~~SIMhY~~~~fs~~~~~~ti~~~~~~~~~~IG~r~~lS~~D~~~in~lY~C~~n  217 (367)
                         ..|..      ..+...-.-.|||.|..........    . + .   ..-.....+...|+..|..||..+.+
T Consensus       190 ---p~y~~------~~~~~Ds~~~SVMsY~~~~~~~~~f----~-~-~---~~~~y~~~~~~~DI~aiQ~LYG~~~~  248 (463)
T 1g9k_A          190 ---PTYRD------AVYAEDTRAYSVMSYWSEKNTGQVF----T-K-T---GEGAYASAPLLDDIAAVQKLYGANLE  248 (463)
T ss_dssp             ---CCGGG------CSSTTCSTTTCTTCSSCGGGGTCCC----C-C-T---TCCCCCSSCCHHHHHHHHHHHCBCTT
T ss_pred             ---ccccc------cccccCCCceEeeeccccccCCCcc----c-c-c---cccccccCcchhhhhhhhcccccccc
Confidence               11100      0011112246999997643110000    0 0 0   00112245678999999999976533

>1sat_A Serratia protease; parallel beta helix, parallel beta roll, hydrolase (serine protease); 1.75A {Serratia marcescens} SCOP: b.80.7.1 d.92.1.6 PDB: 1af0_A* 1smp_A 1srp_A

Probab=99.48  E-value=2.2e-13  Score=137.60  Aligned_cols=171  Identities=17%  Similarity=0.150  Sum_probs=100.5

Q ss_pred             cccCCCCcC-------CCeeEEEEcCC--------------CCCHHHHHHHHHHHHHHHHcCCcEEEEcCC-CCceEEEe
Q psy2949          17 VLYQAQLWP-------DKTVYYNFEDS--------------EFTIYEKTLVENAIQDLRMHTCVRFVPRTN-QDTYLRFR   74 (367)
Q Consensus        17 ~~~~~~~Wp-------~~~VpY~~~~~--------------~~~~~~~~~I~~A~~~w~~~tci~F~~~~~-~~~~I~i~   74 (367)
                      +.....+|+       +.+|+|.|...              .+++.+++.|++||+.|++.+||+|+|+.. ....|+|.
T Consensus        39 l~~~~~kW~~~~~~~~~~~LTY~f~~~~~~~~~~~~~~~~~~ls~~~~~~i~~Af~~Ws~vt~L~F~ev~~~~~adI~f~  118 (471)
T 1sat_A           39 ITRENQTWNGYKVFGQPVKLTFSFPDYKFSSTNVAGDTGLSKFSAEQQQQAKLSLQSWADVANITFTEVAAGQKANITFG  118 (471)
T ss_dssp             HTTTCCCTTCTTCCSCCEEEEEECCCCCTTCCCTTSCBSCBCCCHHHHHHHHHHHHHHHHHBSEEEEECCTTSCCSEEEE
T ss_pred             hccCCCcccCccccCCCceEEEEeecCCCcccccccccccccCCHHHHHHHHHHHHHhhccCCeeEEEcCCCCceEEEEE
Confidence            344567998       77999999432              234789999999999999999999999983 45677775


Q ss_pred             cCC---CCcc-------CCCCCCC-------CCccccc-----ccCCCcccccchhHHHHHhhhcccccccCCCCCcceE
Q psy2949          75 NTG---FGCA-------SPVGYFP-------IGTGIDI-----FLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVR  132 (367)
Q Consensus        75 ~~~---~gc~-------S~vG~~~-------g~q~i~~-----~~l~~~c~~~g~i~HEigHALG~~HEh~rpDRD~yv~  132 (367)
                      ...   .+.+       ++....+       +...++.     .....++....|++|||||||||.|+|....-.    
T Consensus       119 ~~~~~~~g~~~gg~lahA~~P~~g~~~~~~~~e~w~~~~~~~~~~~~~g~~~~~va~HEiGHaLGL~Hs~~~~a~~----  194 (471)
T 1sat_A          119 NYSQDRPGHYDYGTQAYAFLPNTIWQGQDLGGQTWYNVNQSNVKHPATEDYGRQTFTHEIGHALGLSHPGDYNAGE----  194 (471)
T ss_dssp             EECEEETTEECCSCCEEECCTTCEETTEECTTEEEEETTSHHHHCTTTCHHHHHHHHHHHHHHHTCCCSSCCCSSS----
T ss_pred             EecCCCCCcccccceeeEecCCCCcccccccceeeeccccccccCCCcCcccceeeeeeccccccCCCCCCccccc----
Confidence            332   1222       2211111       0111111     011234555689999999999999999754311    


Q ss_pred             EeeCCcCCCCCcccccCCCCcccccCCcCCCCCCcCcccceeccCCCcceeeeCCCCCCCccCccccccHHHHHHHHHHh
Q psy2949         133 VLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLY  212 (367)
Q Consensus       133 I~~~ni~~~~~~nf~k~~~~~~~~~g~~YD~~SIMhY~~~~fs~~~~~~ti~~~~~~~~~~IG~r~~lS~~D~~~in~lY  212 (367)
                               +...|..      ..+...-...|||.|...... ...            ..-.....++..|+..|..||
T Consensus       195 ---------m~P~y~~------~~~~~d~~~~svMsY~~~~~~-g~~------------~~~~~~~~~~~~Di~aiQ~LY  246 (471)
T 1sat_A          195 ---------GDPTYAD------VTYAEDTRQFSLMSYWSETNT-GGD------------NGGHYAAAPLLDDIAAIQHLY  246 (471)
T ss_dssp             ---------SCCCGGG------CSBTTCSTTTCTTCCSCGGGG-TCB------------CTTCCCCSCCHHHHHHHHHHH
T ss_pred             ---------cCccccc------cccccCCccceeecccccccc-Ccc------------ccccccCCCCcchhhhhhccc
Confidence                     0011110      001111234599999764311 100            001112345789999999999


Q ss_pred             cCCCCcc
Q psy2949         213 KCPKNYY  219 (367)
Q Consensus       213 ~C~~nI~  219 (367)
                      .++.+..
T Consensus       247 G~~~~~~  253 (471)
T 1sat_A          247 GANLSTR  253 (471)
T ss_dssp             CBCTTTT
T ss_pred             ccccccc
Confidence            7754333

>3ma2_D Matrix metalloproteinase-14; protein - protein complex, cleavage on PAIR of basic residue disulfide bond, membrane, metal-binding; 2.05A {Homo sapiens} SCOP: d.92.1.11 PDB: 1bqq_M 1buv_M

Probab=99.43  E-value=2.6e-12  Score=113.70  Aligned_cols=101  Identities=16%  Similarity=0.083  Sum_probs=64.8

Q ss_pred             CCCCcCCCeeEEEEcCCC---CC-HHHHHHHHHHHHHHHHcCCcEEEEcCC--------CCceEEE--ecCCCCccC-CC
Q psy2949          20 QAQLWPDKTVYYNFEDSE---FT-IYEKTLVENAIQDLRMHTCVRFVPRTN--------QDTYLRF--RNTGFGCAS-PV   84 (367)
Q Consensus        20 ~~~~Wp~~~VpY~~~~~~---~~-~~~~~~I~~A~~~w~~~tci~F~~~~~--------~~~~I~i--~~~~~gc~S-~v   84 (367)
                      ...+|++..|+|.| ...   ++ ...+++|++|++.|+..++|+|+++..        ...-|+|  .....||.. +-
T Consensus         4 ~g~kW~k~~LTY~i-~n~t~~l~~~~v~~ai~~Af~~Ws~vt~L~F~ev~~~~~~~~~~~~ADI~I~F~~~~hgd~~~FD   82 (181)
T 3ma2_D            4 QGLKWQHNEITFCI-QNYTPKVGEYATYEAIRKAFRVWESATPLRFREVPYAYIREGHEKQADIMIFFAEGFHGDSTPFD   82 (181)
T ss_dssp             CCCCCSSSEEEEEE-CCCCTTTCHHHHHHHHHHHHHHHHHHSSCEEEECCHHHHHTTSSCCCSEEEEEECSCCSSSSCCC
T ss_pred             CCCCCCCCEEEEEE-ccCCCCCCHHHHHHHHHHHHHHHHhcCCcceEEcccccccccccccCcEEEEeecccCCCCCccc
Confidence            45799999999999 432   22 358899999999999999999999862        2344444  333344432 32


Q ss_pred             CCC-------------CCCcccc---cccCC----CcccccchhHHHHHhhhccccc
Q psy2949          85 GYF-------------PIGTGID---IFLGG----RVCFLKGKIQHEILHSLGFWHE  121 (367)
Q Consensus        85 G~~-------------~g~q~i~---~~~l~----~~c~~~g~i~HEigHALG~~HE  121 (367)
                      |.-             +|...++   .++++    .+-....+++|||||||||.|.
T Consensus        83 G~gg~lAhAf~P~~~~~Gd~hfd~~e~wt~~~~~~~g~~l~~v~~hE~Gh~lGl~hs  139 (181)
T 3ma2_D           83 GEGGFLAHAYFPGPNIGGDTHFDSAEPWTVRNEDLNGNDIFLVAVHELGHALGLEHS  139 (181)
T ss_dssp             SSSSEEEEECCSCSTTTTCEEEETTSCEECTTSCTTSEEHHHHHHHHHHHHTTCCCC
T ss_pred             CCCCeeeeccCCCCCCCCceEecCccccccCCCccccceeeeeehhhccccccCCcC
Confidence            321             1222222   11222    1222336999999999999885

>1eak_A 72 kDa type IV collagenase; hydrolase-hydrolase inhibitor complex, hydrolyse, matrix metalloproteinase, gelatinase A, hydrolase- hydrolase inhib complex; 2.66A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1ks0_A 1cxw_A

Probab=98.95  E-value=1.6e-08  Score=99.75  Aligned_cols=53  Identities=13%  Similarity=0.143  Sum_probs=42.1

Q ss_pred             CCCCcCCCeeEEEEcCCC---CC-HHHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEE
Q psy2949          20 QAQLWPDKTVYYNFEDSE---FT-IYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRF   73 (367)
Q Consensus        20 ~~~~Wp~~~VpY~~~~~~---~~-~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i   73 (367)
                      ...+|++..|.|.| ...   ++ +..+.+|++|++.|++.|.|+|+++.....-|+|
T Consensus        84 ~~~kW~k~~LTY~i-~~~~~~l~~~~v~~~i~~AF~~Ws~vtpLtF~ev~~~~ADI~I  140 (421)
T 1eak_A           84 RKPKWDKNQITYRI-IGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMI  140 (421)
T ss_dssp             CCCCCSSSEEEEEE-CCCCTTSCHHHHHHHHHHHHHHHHTSSSCEEEECCSSCCSEEE
T ss_pred             CCcccccceEEEEE-ecCCCCCCHHHHHHHHHHHHHHHhcccCceeEEcCCCCCCEEE
Confidence            45699999999999 432   22 5688999999999999999999998844444544

>1c7k_A NCNP, zinc endoprotease; alpha and beta protein, metalloproteinase, hydrolase; 1.00A {Streptomyces caespitosus} SCOP: d.92.1.1 PDB: 1kuh_A

Probab=98.69  E-value=1.2e-08  Score=85.14  Aligned_cols=90  Identities=16%  Similarity=-0.025  Sum_probs=55.5

Q ss_pred             eeEEEEcCCCCCHHHHHHHHHHHHHHH-HcCCcEEEEcCCCCceEEEecCCCCccCCCCCC--C-CCcccccccCCCccc
Q psy2949          28 TVYYNFEDSEFTIYEKTLVENAIQDLR-MHTCVRFVPRTNQDTYLRFRNTGFGCASPVGYF--P-IGTGIDIFLGGRVCF  103 (367)
Q Consensus        28 ~VpY~~~~~~~~~~~~~~I~~A~~~w~-~~tci~F~~~~~~~~~I~i~~~~~gc~S~vG~~--~-g~q~i~~~~l~~~c~  103 (367)
                      +|+|.. +.  .++.+..|++|++.|+ ..+.|+|+|+  ...-|+|...+++.+++....  + |.-.+.. ....+-.
T Consensus         3 ~~~y~~-s~--~~~v~~ai~~Afq~W~s~Vt~l~F~ev--~~ADI~I~~~~D~gg~~A~~~~~g~G~~~~d~-t~~~~~~   76 (132)
T 1c7k_A            3 TVTYDP-SN--APSFQQEIANAAQIWNSSVRNVQLRAG--GNADFSYYEGNDSRGSYAQTDGHGRGYIFLDY-QQNQQYD   76 (132)
T ss_dssp             EEEEEE-EE--CGGGHHHHHHHHHHHHHHCSSEEEEEC--SSCSEEEEEECCTTCCEEEECSSSCEEEEEEH-HHHHHSC
T ss_pred             EEEEeC-CC--hHHHHHHHHHHHHHHHhcCCceEEEEc--CCceEEEEeCCCCCCceecCCCCCCCCeEecc-cccCCcC
Confidence            577776 33  5689999999999995 8999999999  344555542222223321111  1 1111110 0011222


Q ss_pred             ccchhHHHHHhhhccccccc
Q psy2949         104 LKGKIQHEILHSLGFWHEHT  123 (367)
Q Consensus       104 ~~g~i~HEigHALG~~HEh~  123 (367)
                      ..++++|||||+|||.|+..
T Consensus        77 ~~~v~aHE~GH~LGL~~~y~   96 (132)
T 1c7k_A           77 STRVTAHETGHVLGLPDHYQ   96 (132)
T ss_dssp             HHHHHHHHHHHHHTCCCCTT
T ss_pred             CceEEeeeehhccCCcccCC
Confidence            34899999999999999886

>1l6j_A Matrix metalloproteinase-9; twisted beta sheet flanked by helices, hydrolase; 2.50A {Homo sapiens} SCOP: a.20.1.2 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2

Probab=98.68  E-value=3.5e-07  Score=90.35  Aligned_cols=53  Identities=11%  Similarity=0.114  Sum_probs=41.8

Q ss_pred             CCCCcCCCeeEEEEcCCC---CC-HHHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEE
Q psy2949          20 QAQLWPDKTVYYNFEDSE---FT-IYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRF   73 (367)
Q Consensus        20 ~~~~Wp~~~VpY~~~~~~---~~-~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i   73 (367)
                      ...+|++..|.|.| ...   ++ +..+.+|++|++.|++.|.|+|+++.....-|.|
T Consensus        93 ~~~kW~k~~LTY~i-~~~t~~l~~~~v~~~i~~Af~~Ws~vt~L~F~ev~~~~ADI~I  149 (425)
T 1l6j_A           93 GDLKWHHHNITYWI-QNYSEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRDADIVI  149 (425)
T ss_dssp             SCSSCCSSEEEEEE-CCCCTTSCHHHHHHHHHHHHHHHHHTSSCEEEEECSTTSSEEE
T ss_pred             CCcccccceeEEEE-ecCCCCCCHHHHHHHHHHHHHHHhhcccceEEEccCCCCCEEE
Confidence            45699999999999 432   22 5688999999999999999999998743444444

>1ck7_A Protein (gelatinase A); hydrolase (metalloprotease), FULL-length, metalloproteinase; 2.80A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 g.14.1.2 g.14.1.2 g.14.1.2 PDB: 1gxd_A

Probab=98.53  E-value=1.4e-06  Score=90.48  Aligned_cols=53  Identities=13%  Similarity=0.143  Sum_probs=42.4

Q ss_pred             CCCCcCCCeeEEEEcCCC---CC-HHHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEE
Q psy2949          20 QAQLWPDKTVYYNFEDSE---FT-IYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRF   73 (367)
Q Consensus        20 ~~~~Wp~~~VpY~~~~~~---~~-~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i   73 (367)
                      ...+|++..|.|.| ...   ++ +.++++|++|++.|++.|.|+|+++.....-|.|
T Consensus        86 ~~~kW~k~~LTy~i-~~~~~~l~~~~v~~~~~~Af~~Ws~vt~L~F~ev~~~~ADI~I  142 (631)
T 1ck7_A           86 RKPKWDKNQITYRI-IGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMI  142 (631)
T ss_dssp             SSCSCSCSEEEEEE-CCCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECSSSCCSEEE
T ss_pred             CCcccccccceEEE-ecCCCCcCHHHHHHHHHHHHHHHhhccceeEEEccCCCCCEEE
Confidence            45689999999999 432   22 5789999999999999999999998854555555

>3poj_A Mannan-binding lectin serine protease 1; CUB domain, Ca2+ binding site, complex with ethylamine, COMP protein, lectin pathway of complement; 1.45A {Rattus norvegicus} PDB: 3pob_A 3pof_A 3pog_A 3poi_A 3poe_A

Probab=95.35  E-value=0.0079  Score=47.96  Aligned_cols=36  Identities=22%  Similarity=0.172  Sum_probs=29.9

Q ss_pred             cccccc-cCCCCCCCCCCCCCCCCcEEEEcccCCCccccch
Q psy2949         303 DIQGFY-STSGPIPDLGYLPTGSGWFYKIGGPSDDRKIMDK  342 (367)
Q Consensus       303 ~~~g~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~r~~~~~  342 (367)
                      ...|.+ +|++|.+    +|++.+|.|.|.+|.+.||.+-=
T Consensus        11 ~~~G~i~SP~yP~~----Yp~~~~C~w~I~~~~g~~i~l~f   47 (115)
T 3poj_A           11 QRTGTITSPDYPNP----YPKSSECSYTIDLEEGFMVTLQF   47 (115)
T ss_dssp             SSEEEEECTTTTSC----CCTTCEEEEEEECCTTCCCEEEE
T ss_pred             CCCEEEcCCCCCcC----CcCCCeEEEEEEcCCCCEEEEEE
Confidence            345666 8999876    99999999999999999988653

>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=95.17  E-value=0.011  Score=50.61  Aligned_cols=39  Identities=13%  Similarity=0.006  Sum_probs=31.4

Q ss_pred             ccCccccccc-cCCCCCCCCCCCCCCCCcEEEEcccCCCccccc
Q psy2949         299 YQGFDIQGFY-STSGPIPDLGYLPTGSGWFYKIGGPSDDRKIMD  341 (367)
Q Consensus       299 ~~~~~~~g~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~r~~~~  341 (367)
                      .......|.+ ||++|..    ||++.+|.|.|.+|.+.||.+-
T Consensus         6 ~~l~~~~G~i~SP~yP~~----Yp~~~~C~w~I~~~~g~~I~l~   45 (170)
T 1szb_A            6 KWPEPVFGRLASPGFPGE----YANDQERRWTLTAPPGYRLRLY   45 (170)
T ss_dssp             CCCCCCEEEEECTTTTSC----CCSSCEEEEEEECCTTEEEEEE
T ss_pred             ceEcCCCeEEECCCCCcC----CcCCCcEEEEEEcCCCCEEEEE
Confidence            3444556766 8999876    9999999999999999988764

>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell adhesion, extracellular matrix; 2.30A {Homo sapiens}

Probab=95.02  E-value=0.011  Score=49.69  Aligned_cols=34  Identities=12%  Similarity=0.110  Sum_probs=28.6

Q ss_pred             ccccc-cCCCCCCCCCCCCCCCCcEEEEcccCCCccccc
Q psy2949         304 IQGFY-STSGPIPDLGYLPTGSGWFYKIGGPSDDRKIMD  341 (367)
Q Consensus       304 ~~g~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~r~~~~  341 (367)
                      ..|.+ +|++|..    ||++.+|.|.|.+|.+.||.+-
T Consensus        14 ~~G~i~SP~yP~~----Yp~n~~C~W~I~~~~g~~I~L~   48 (149)
T 2wno_A           14 PKQIFKSPGFPNE----YEDNQICYWHIRLKYGQRIHLS   48 (149)
T ss_dssp             SEEEEECTTTTSC----CCTTCEEEEEEECCTTCEEEEE
T ss_pred             CceEEECCCCCcC----CCCCCEEEEEEEECCCCEEEEE
Confidence            34665 8888865    9999999999999999998764

>2cki_A Ulilysin; metalloprotease, hydrolase; HET: ARG; 1.7A {Methanosarcina acetivorans} PDB: 2j83_A* 3lum_A* 3lun_A*

Probab=94.12  E-value=0.016  Score=53.74  Aligned_cols=21  Identities=29%  Similarity=0.276  Sum_probs=18.7

Q ss_pred             chhHHHHHhhhcccccccCCC
Q psy2949         106 GKIQHEILHSLGFWHEHTRPD  126 (367)
Q Consensus       106 g~i~HEigHALG~~HEh~rpD  126 (367)
                      .|++||+||-|||+|-++...
T Consensus       164 ~TltHEvGH~LGL~HtF~~~~  184 (262)
T 2cki_A          164 RTATHEIGHWLNLYHIWGDEL  184 (262)
T ss_dssp             HHHHHHHHHHTTCCCTTCCCC
T ss_pred             chhhhhhhhhhcceeeccCCc
Confidence            699999999999999998643

>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1

Probab=94.08  E-value=0.017  Score=48.62  Aligned_cols=33  Identities=18%  Similarity=0.103  Sum_probs=28.2

Q ss_pred             cccc-cCCCCCCCCCCCCCCCCcEEEEcccCCCccccc
Q psy2949         305 QGFY-STSGPIPDLGYLPTGSGWFYKIGGPSDDRKIMD  341 (367)
Q Consensus       305 ~g~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~r~~~~  341 (367)
                      .|.+ +|++|.+    ||++.+|.|.|.+|.+.||.+-
T Consensus         5 ~G~i~SP~yP~~----Yp~~~~C~w~I~~~~g~~I~l~   38 (159)
T 1nzi_A            5 YGEILSPNYPQA----YPSEVEKSWDIEVPEGYGIHLY   38 (159)
T ss_dssp             EEEEECTTTTSC----CCSSEEEEEEEECCTTEEEEEE
T ss_pred             CEEEECCCCccC----CCCCCCEEEEEEeCCCCEEEEE
Confidence            4555 8899876    9999999999999999988764

>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H

Probab=93.40  E-value=0.034  Score=57.11  Aligned_cols=46  Identities=15%  Similarity=0.187  Sum_probs=32.6

Q ss_pred             ccCCCCcccCc-cccccc-cCCCCCCCCCCCCCCCCcEEEEcccCC-Cccccc
Q psy2949         292 YKCPKNYYQGF-DIQGFY-STSGPIPDLGYLPTGSGWFYKIGGPSD-DRKIMD  341 (367)
Q Consensus       292 Y~C~~~~~~~~-~~~g~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~-~r~~~~  341 (367)
                      |+|..|..... ...|.+ ||++|.+    ||++.+|.|.|.+|++ +||.|-
T Consensus         4 ~~~~~CGg~l~~~~~G~i~SPnyP~~----Yp~n~~C~W~I~~p~~~~~I~L~   52 (577)
T 4gz9_A            4 FRSDKCGGTIKIENPGYLTSPGYPHS----YHPSEKCEWLIQAPEPYQRIMIN   52 (577)
T ss_dssp             ---CCSSEEEECSSCEEEECTTTTTC----CCSSCEEEEEEECSSTTCCEEEE
T ss_pred             cccCCCCCEEEcCCCEEEeCCCCCCC----CCCCCeEEEEEEECCCCcEEEEE
Confidence            66776653322 334766 9999877    9999999999999988 677663

>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding domain, angiogenesis, developmental protein, differentiation; HET: NAG FUC; 2.00A {Homo sapiens} SCOP: b.18.1.2 b.18.1.2 b.23.1.1

Probab=93.14  E-value=0.034  Score=55.15  Aligned_cols=47  Identities=17%  Similarity=0.168  Sum_probs=34.0

Q ss_pred             hccCCCCcccCccccccc-cCCCCCCCCCCCCCCCCcEEEEcccCCCccccc
Q psy2949         291 LYKCPKNYYQGFDIQGFY-STSGPIPDLGYLPTGSGWFYKIGGPSDDRKIMD  341 (367)
Q Consensus       291 ~Y~C~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~r~~~~  341 (367)
                      +|....|........|.+ +|++|..    ||++.+|.|.|.+|.+.||.|-
T Consensus         5 ~~~~~~Cg~~~~~~~G~i~SP~yP~~----Yp~~~~C~w~I~~~~g~~I~l~   52 (450)
T 2qqm_A            5 FKRGPECSQNYTTPSGVIKSPGFPEK----YPNSLECTYIVFAPKMSEIILE   52 (450)
T ss_dssp             ----CTTCEEECSSEEEEECTTTTSC----CCSSCEEEEEEECGGGCCEEEE
T ss_pred             eccCCCCCCeEeCCcEEEeCCCCCcC----CCCCCeEEEEEEeCCCCEEEEE
Confidence            344445554444456766 9999876    9999999999999999998774

>2w15_A Zinc metalloproteinase BAP1; hydrolase inhibitor complex, metal-binding, zinc-depending, metalloprotease, metalloproteinase/inhibitor complex; HET: WR2; 1.05A {Bothrops asper} PDB: 2w12_A* 2w13_A* 2w14_A* 1nd1_A 3gbo_A

Probab=92.73  E-value=0.034  Score=49.10  Aligned_cols=18  Identities=33%  Similarity=0.608  Sum_probs=15.9

Q ss_pred             cchhHHHHHhhhcccccc
Q psy2949         105 KGKIQHEILHSLGFWHEH  122 (367)
Q Consensus       105 ~g~i~HEigHALG~~HEh  122 (367)
                      ..+++|||||.||+.|..
T Consensus       137 a~~~AHElGH~lG~~HD~  154 (202)
T 2w15_A          137 AVTMAHELGHNLGIHHDT  154 (202)
T ss_dssp             HHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHhhhcCCccCC
Confidence            368999999999999964

>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}

Probab=92.66  E-value=0.034  Score=53.31  Aligned_cols=36  Identities=22%  Similarity=0.184  Sum_probs=30.1

Q ss_pred             ccccccc-cCCCCCCCCCCCCCCCCcEEEEcccCCCccccc
Q psy2949         302 FDIQGFY-STSGPIPDLGYLPTGSGWFYKIGGPSDDRKIMD  341 (367)
Q Consensus       302 ~~~~g~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~r~~~~  341 (367)
                      ....|.+ ||++|..    ||++.+|.|.|.+|++.||.+-
T Consensus         6 t~~~G~i~SP~yP~~----Yp~n~~C~W~I~~~~g~~I~l~   42 (361)
T 4aqb_A            6 NNMFGQIQSPGYPDS----YPSDSEVTWNITVPDGFRIKLY   42 (361)
T ss_dssp             ESSEEEEECTTTTSC----CCSSEEEEEEEECCTTEEEEEE
T ss_pred             eCCeEEEeCCCCCCC----CCCCCeEEEEEEECCCCEEEEE
Confidence            3445666 9999977    9999999999999999998763

>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}

Probab=92.53  E-value=0.06  Score=49.59  Aligned_cols=36  Identities=22%  Similarity=0.208  Sum_probs=30.2

Q ss_pred             ccccccc-cCCCCCCCCCCCCCCCCcEEEEcccCCCccccc
Q psy2949         302 FDIQGFY-STSGPIPDLGYLPTGSGWFYKIGGPSDDRKIMD  341 (367)
Q Consensus       302 ~~~~g~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~r~~~~  341 (367)
                      ....|.+ +|++|..    +|.+.+|.|.|.+|.+.||.+-
T Consensus       172 ~~~~G~i~SP~yP~~----Yp~~~~C~w~i~~~~g~~i~l~  208 (278)
T 3dem_A          172 TQRTGVITSPDFPNP----YPKSSECLYTIELEEGFMVNLQ  208 (278)
T ss_dssp             CSSEEEEESTTTTSC----CCSSCEEEEEEECCTTCCEEEE
T ss_pred             cCCccceeCCCCCCC----CCCcCeEEEEEEeCCCcEEEEE
Confidence            3456766 8999876    9999999999999999998764

>1bud_A Protein (acutolysin A); metalloproteinase, snake venom, MMP, toxin; 1.90A {Deinagkistrodon acutus} SCOP: d.92.1.9 PDB: 1bsw_A

Probab=92.52  E-value=0.038  Score=48.60  Aligned_cols=19  Identities=32%  Similarity=0.544  Sum_probs=16.3

Q ss_pred             cchhHHHHHhhhccccccc
Q psy2949         105 KGKIQHEILHSLGFWHEHT  123 (367)
Q Consensus       105 ~g~i~HEigHALG~~HEh~  123 (367)
                      ..+++|||||.||+.|...
T Consensus       134 a~~~AHElGH~lG~~HD~~  152 (197)
T 1bud_A          134 AITLAHEMAHNLGVSHDEG  152 (197)
T ss_dssp             HHHHHHHHHHHTTCCCCCT
T ss_pred             HHHHHHHHhhhcCCccCCC
Confidence            4689999999999999653

>4axq_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi; 1.40A {Archaeoglobus fulgidus} PDB: 2xhq_A 3zvs_A 4a3w_A*

Probab=92.45  E-value=0.04  Score=47.30  Aligned_cols=15  Identities=47%  Similarity=0.603  Sum_probs=14.1

Q ss_pred             chhHHHHHhhhcccc
Q psy2949         106 GKIQHEILHSLGFWH  120 (367)
Q Consensus       106 g~i~HEigHALG~~H  120 (367)
                      .+++||+||.||+.|
T Consensus       116 k~~~HElGH~lGL~H  130 (163)
T 4axq_A          116 KEAVHEIGHVLGLKH  130 (163)
T ss_dssp             HHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHcCCCC
Confidence            579999999999999

>1qua_A Acutolysin-C, hemorrhagin III; metalloprotease, hemorrhagic toxin, snake venom proteinase; 2.20A {Deinagkistrodon acutus} SCOP: d.92.1.9

Probab=92.44  E-value=0.039  Score=48.49  Aligned_cols=18  Identities=33%  Similarity=0.547  Sum_probs=15.9

Q ss_pred             cchhHHHHHhhhcccccc
Q psy2949         105 KGKIQHEILHSLGFWHEH  122 (367)
Q Consensus       105 ~g~i~HEigHALG~~HEh  122 (367)
                      ..+++|||||.||+.|..
T Consensus       136 a~~~AHElGH~lG~~HD~  153 (197)
T 1qua_A          136 AVTMAHELGHNLGMNHDG  153 (197)
T ss_dssp             HHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHhcCCCCCC
Confidence            368999999999999964

>1atl_A Atrolysin C; metalloendopeptidase, hydrolase-hydrolase inhibitor complex; HET: 0QI; 1.80A {Crotalus atrox} SCOP: d.92.1.9 PDB: 1htd_A 1dth_A* 3aig_A* 2aig_P* 4aig_A* 1iag_A

Probab=92.40  E-value=0.04  Score=48.67  Aligned_cols=17  Identities=35%  Similarity=0.573  Sum_probs=15.5

Q ss_pred             chhHHHHHhhhcccccc
Q psy2949         106 GKIQHEILHSLGFWHEH  122 (367)
Q Consensus       106 g~i~HEigHALG~~HEh  122 (367)
                      .+++|||||.||+.|..
T Consensus       138 ~~~AHElGHnlG~~HD~  154 (202)
T 1atl_A          138 VTMAHELGHNLGMEHDG  154 (202)
T ss_dssp             HHHHHHHHHHTTCCCCC
T ss_pred             EEehhhhccccCceeCC
Confidence            68999999999999965

>1kuf_A Atrolysin E, metalloproteinase; alpha/beta protein, hydrolase; 1.35A {Protobothrops mucrosquamatus} SCOP: d.92.1.9 PDB: 1kui_A 1kuk_A 1kug_A 1wni_A

Probab=92.38  E-value=0.04  Score=48.72  Aligned_cols=19  Identities=32%  Similarity=0.543  Sum_probs=16.3

Q ss_pred             cchhHHHHHhhhccccccc
Q psy2949         105 KGKIQHEILHSLGFWHEHT  123 (367)
Q Consensus       105 ~g~i~HEigHALG~~HEh~  123 (367)
                      ..+++|||||.||+.|...
T Consensus       139 a~~~AHElGH~lG~~HD~~  157 (203)
T 1kuf_A          139 AVTMTHELGHNLGMEHDDK  157 (203)
T ss_dssp             HHHHHHHHHHHTTCCCCCT
T ss_pred             HHHHHHHhhhhcCCCCCCC
Confidence            3689999999999999653

>1yp1_A FII; FII hydrolase; 1.90A {Deinagkistrodon acutus}

Probab=92.29  E-value=0.042  Score=48.53  Aligned_cols=19  Identities=32%  Similarity=0.550  Sum_probs=16.3

Q ss_pred             cchhHHHHHhhhccccccc
Q psy2949         105 KGKIQHEILHSLGFWHEHT  123 (367)
Q Consensus       105 ~g~i~HEigHALG~~HEh~  123 (367)
                      ..+++|||||.||+.|...
T Consensus       136 a~~~AHElGH~lG~~HD~~  154 (202)
T 1yp1_A          136 AVVMAHELGHNLGMLHDDG  154 (202)
T ss_dssp             HHHHHHHHHHHTTCCCCCT
T ss_pred             HHHHHHHHHHhcCCCCCCC
Confidence            3689999999999999653

>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A*

Probab=92.11  E-value=0.045  Score=48.81  Aligned_cols=17  Identities=41%  Similarity=0.559  Sum_probs=15.4

Q ss_pred             cchhHHHHHhhhccccc
Q psy2949         105 KGKIQHEILHSLGFWHE  121 (367)
Q Consensus       105 ~g~i~HEigHALG~~HE  121 (367)
                      ..+++|||||.||+.|.
T Consensus       142 a~~~AHElGHnlG~~HD  158 (217)
T 3b8z_A          142 AFTVAHEIGHLLGLSHD  158 (217)
T ss_dssp             HHHHHHHHHHHTTCCCT
T ss_pred             hhhhHhhhhhhcCCcCC
Confidence            36999999999999996

>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1

Probab=91.76  E-value=0.058  Score=50.05  Aligned_cols=36  Identities=28%  Similarity=0.287  Sum_probs=30.1

Q ss_pred             ccccccc-cCCCCCCCCCCCCCCCCcEEEEcccCCCccccc
Q psy2949         302 FDIQGFY-STSGPIPDLGYLPTGSGWFYKIGGPSDDRKIMD  341 (367)
Q Consensus       302 ~~~~g~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~r~~~~  341 (367)
                      ....|.+ +|++|..    +|.+.+|.|.|.+|.+.||.+-
T Consensus       171 ~~~~G~i~SP~yP~~----Yp~~~~C~w~I~~~~g~~I~l~  207 (286)
T 1nt0_A          171 TGRSGFLSSPEYPQP----YPKLSSCAYNIRLEEGFSITLD  207 (286)
T ss_dssp             CSSSEEEECTTTTSC----CCSSCEEEEEEECCSSCEEEEE
T ss_pred             cCCceEEeCCCCCCC----CCCCCEEEEEEECCCceEEEEE
Confidence            3445666 8888875    9999999999999999999875

>1nt0_A MAsp2, mannose-binding protein associated serine proteas; CUB domain, EGF like domain., hydrolase, sugar binding protein; HET: NAG EDO; 2.70A {Rattus norvegicus} SCOP: b.23.1.1 b.23.1.1 g.3.11.1

Probab=91.41  E-value=0.092  Score=48.67  Aligned_cols=35  Identities=14%  Similarity=0.084  Sum_probs=29.3

Q ss_pred             cccccc-cCCCCCCCCCCCCCCCCcEEEEcccCCCccccc
Q psy2949         303 DIQGFY-STSGPIPDLGYLPTGSGWFYKIGGPSDDRKIMD  341 (367)
Q Consensus       303 ~~~g~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~r~~~~  341 (367)
                      ...|.+ +|++|.+    ||++.+|.|.|.+|.+.||.|-
T Consensus         6 ~~~G~i~SP~yP~~----Yp~~~~C~w~I~~p~g~~I~L~   41 (286)
T 1nt0_A            6 PVFGRLVSPGFPEK----YGNHQDRSWTLTAPPGFRLRLY   41 (286)
T ss_dssp             CCEEEEECTTTTSC----CCSSCCEEEEEECCTTEEEEEE
T ss_pred             CCCceEeCCCCCcc----CcCCCcEEEEEEcCCCCEEEEE
Confidence            345655 8999876    9999999999999999998764

>2ddf_A ADAM 17; hydrolase; HET: INN CIT; 1.70A {Homo sapiens} PDB: 2fv5_A* 3l0v_A* 3kme_A* 3l0t_A* 3kmc_A* 3le9_A* 3lea_A* 3lgp_A* 3o64_A* 3ewj_A* 3edz_A* 3e8r_A* 2fv9_A* 1zxc_A* 2oi0_A* 3b92_A* 2a8h_A* 1bkc_A* 3cki_A 1bkc_I* ...

Probab=91.24  E-value=0.063  Score=49.11  Aligned_cols=18  Identities=28%  Similarity=0.331  Sum_probs=15.6

Q ss_pred             chhHHHHHhhhccccccc
Q psy2949         106 GKIQHEILHSLGFWHEHT  123 (367)
Q Consensus       106 g~i~HEigHALG~~HEh~  123 (367)
                      .+++|||||.||+.|...
T Consensus       184 ~~~AHElGHnlG~~HD~~  201 (257)
T 2ddf_A          184 LVTTHELGHNFGAEHDPD  201 (257)
T ss_dssp             HHHHHHHHHHTTCCCCCT
T ss_pred             eeeeeehhhhcCcccCCC
Confidence            479999999999999753

>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1

Probab=91.19  E-value=0.048  Score=43.58  Aligned_cols=22  Identities=14%  Similarity=-0.064  Sum_probs=19.3

Q ss_pred             CCCCCCcEEEEcccCCCccccc
Q psy2949         320 LPTGSGWFYKIGGPSDDRKIMD  341 (367)
Q Consensus       320 ~~~~~~c~~~~~~~~~~r~~~~  341 (367)
                      +|++.+|.|.|.+|.+.||.+-
T Consensus        24 Yp~~~~C~w~I~~~~g~~I~l~   45 (116)
T 1spp_B           24 DRQKNLCTWTILMKPDQKVRMA   45 (116)
T ss_dssp             SSCCSEEEEEEECCTTCEEEEE
T ss_pred             CcCCCCEEEEEEeCCCCEEEEE
Confidence            6778999999999999998763

>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins, spermadhesins, CUB domain architecture, complex (seminal plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1

Probab=90.99  E-value=0.093  Score=41.40  Aligned_cols=22  Identities=0%  Similarity=0.013  Sum_probs=19.4

Q ss_pred             CCCCCCcEEEEcccCCCccccc
Q psy2949         320 LPTGSGWFYKIGGPSDDRKIMD  341 (367)
Q Consensus       320 ~~~~~~c~~~~~~~~~~r~~~~  341 (367)
                      ||++.+|.|.|.+|.+.||.+-
T Consensus        21 Yp~~~~C~w~I~~~~g~~I~l~   42 (109)
T 1spp_A           21 KGPKTECVWTLQVDPKYKLLVS   42 (109)
T ss_dssp             CSSCSEEEEEEECCTTSEEEEE
T ss_pred             CCCCCcEEEEEEcCCCCEEEEE
Confidence            7778999999999999998764

>2v4b_A Adamts-1; zymogen, protease, hydrolase, metalloprotease, heparin-binding, metalloproteinase, metzincin, glycoprotein metal-binding; 2.00A {Homo sapiens} PDB: 2jih_A 3q2g_A* 3q2h_A*

Probab=90.93  E-value=0.07  Score=50.05  Aligned_cols=19  Identities=21%  Similarity=0.240  Sum_probs=16.3

Q ss_pred             ccchhHHHHHhhhcccccc
Q psy2949         104 LKGKIQHEILHSLGFWHEH  122 (367)
Q Consensus       104 ~~g~i~HEigHALG~~HEh  122 (367)
                      ...+++|||||.||+.|.-
T Consensus       143 ~a~t~AHElGHnlG~~HD~  161 (300)
T 2v4b_A          143 AAFTTAHELGHVFNMPHDD  161 (300)
T ss_dssp             HHHHHHHHHHHHTTCCCTT
T ss_pred             ceehhhhhhhhhcCCcCCC
Confidence            3479999999999999963

>1r55_A ADAM 33; metalloprotease, inhibitor, asthma, hydrolase; HET: NAG MAN 097; 1.58A {Homo sapiens} SCOP: d.92.1.9 PDB: 1r54_A*

Probab=90.80  E-value=0.075  Score=47.36  Aligned_cols=18  Identities=44%  Similarity=0.682  Sum_probs=15.9

Q ss_pred             cchhHHHHHhhhcccccc
Q psy2949         105 KGKIQHEILHSLGFWHEH  122 (367)
Q Consensus       105 ~g~i~HEigHALG~~HEh  122 (367)
                      ..+++|||||.||+.|.-
T Consensus       137 a~~~AHElGHnlG~~HD~  154 (214)
T 1r55_A          137 AATMAHEIGHSLGLSHDP  154 (214)
T ss_dssp             HHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHhcCCcCCC
Confidence            368999999999999965

>3dem_A Complement factor MAsp-3; complement system, innate immunity, calcium binding sites, C pathway, EGF-like domain, glycoprotein, hydrolase; HET: NAG; 2.30A {Homo sapiens}

Probab=90.65  E-value=0.088  Score=48.42  Aligned_cols=35  Identities=23%  Similarity=0.219  Sum_probs=29.0

Q ss_pred             cccccc-cCCCCCCCCCCCCCCCCcEEEEcccCCCccccc
Q psy2949         303 DIQGFY-STSGPIPDLGYLPTGSGWFYKIGGPSDDRKIMD  341 (367)
Q Consensus       303 ~~~g~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~r~~~~  341 (367)
                      ...|.+ +|++|..    ||++.+|.|.|.+|.+.||.+-
T Consensus         7 ~~~G~i~SP~yP~~----Yp~~~~C~w~I~~~~g~~I~L~   42 (278)
T 3dem_A            7 NMFGQIQSPGYPDS----YPSDSEVTWNITVPDGFRIKLY   42 (278)
T ss_dssp             CCEEEEECTTTTSC----CCSSEEEEEEEECCTTEEEEEE
T ss_pred             cCCceEeCCCCCCC----CcCCCcEEEEEEECCCCEEEEE
Confidence            345665 8999876    8999999999999999988763

>4dd8_A Disintegrin and metalloproteinase domain-containi 8; batimastat, inflammation, alpha/beta motif, metalloproteinas allergic asthma, tumorigenesis; HET: BAT; 2.10A {Homo sapiens}

Probab=90.63  E-value=0.079  Score=46.98  Aligned_cols=18  Identities=33%  Similarity=0.586  Sum_probs=15.9

Q ss_pred             chhHHHHHhhhccccccc
Q psy2949         106 GKIQHEILHSLGFWHEHT  123 (367)
Q Consensus       106 g~i~HEigHALG~~HEh~  123 (367)
                      .+++|||||.||+.|.-.
T Consensus       135 ~~~AHElGH~lG~~HD~~  152 (208)
T 4dd8_A          135 CTMAHEMGHNLGMDHDEN  152 (208)
T ss_dssp             HHHHHHHHHHTTCCCGGG
T ss_pred             HHHHHHHHHHcCCcCCCC
Confidence            579999999999999754

>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding domain, developmental protein, differentiation, glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}

Probab=90.57  E-value=0.11  Score=51.67  Aligned_cols=35  Identities=17%  Similarity=0.147  Sum_probs=29.6

Q ss_pred             cccccc-cCCCCCCCCCCCCCCCCcEEEEcccCCCccccc
Q psy2949         303 DIQGFY-STSGPIPDLGYLPTGSGWFYKIGGPSDDRKIMD  341 (367)
Q Consensus       303 ~~~g~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~r~~~~  341 (367)
                      ...|.+ +|++|.+    ||++.+|.|.|.+|.+.||.|-
T Consensus        14 ~~~G~i~SP~yP~~----Yp~~~~C~w~I~~~~g~~I~L~   49 (460)
T 2qqo_A           14 SPNGTIESPGFPEK----YPHNLDCTFTILAKPKMEIILQ   49 (460)
T ss_dssp             SSEEEEECTTTTSC----CCSSCEEEEEEECCTTCEEEEE
T ss_pred             CCceEEeCCCCCCC----CCCCCEEEEEEEcCCCCEEEEE
Confidence            345766 9999876    9999999999999999998764

>2rjp_A Adamts-4; metalloprotease domain, aggrecanase, cleavage on PAIR of basic residues, extracellular matrix, glycoprotein, hydrolase, metal-binding; HET: 886; 2.80A {Homo sapiens} PDB: 3b2z_A

Probab=90.44  E-value=0.082  Score=49.98  Aligned_cols=18  Identities=17%  Similarity=0.331  Sum_probs=15.9

Q ss_pred             cchhHHHHHhhhcccccc
Q psy2949         105 KGKIQHEILHSLGFWHEH  122 (367)
Q Consensus       105 ~g~i~HEigHALG~~HEh  122 (367)
                      ..+++|||||.||+.|..
T Consensus       144 a~t~AHElGHnlGm~HD~  161 (316)
T 2rjp_A          144 AFTAAHQLGHVFNMLHDN  161 (316)
T ss_dssp             HHHHHHHHHHHTTCCCTT
T ss_pred             HHHHHHHHHhhcCccCCC
Confidence            369999999999999963

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens}

Probab=90.29  E-value=0.14  Score=50.76  Aligned_cols=35  Identities=17%  Similarity=0.148  Sum_probs=29.3

Q ss_pred             cccccc-cCCCCCCCCCCCCCCCCcEEEEcccCCCccccc
Q psy2949         303 DIQGFY-STSGPIPDLGYLPTGSGWFYKIGGPSDDRKIMD  341 (367)
Q Consensus       303 ~~~g~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~r~~~~  341 (367)
                      ...|.+ +|++|..    +|++.+|.|.|.+|.+.||.|-
T Consensus         7 ~~~G~i~SP~yP~~----Y~~~~~C~w~I~~~~g~~i~L~   42 (457)
T 3kq4_B            7 ESTGTIQSPGHPNV----YPHGINCTWHILVQPNHLIHLM   42 (457)
T ss_dssp             SSEEECCCSSTTSC----CCSSCCCEEEEECCSSEEEEEC
T ss_pred             cCCEEEeCCCCCCC----CCCCCcEEEEEEcCCCCEEEEE
Confidence            345655 8888876    8999999999999999998764

>2rjq_A Adamts-5; metalloprotease domain, aggrecanase, cleavage on PAIR of BAS residues, extracellular matrix, glycoprotein, hydrolase, ME binding; HET: NAG BAT; 2.60A {Homo sapiens}

Probab=90.17  E-value=0.088  Score=51.02  Aligned_cols=18  Identities=39%  Similarity=0.536  Sum_probs=16.0

Q ss_pred             cchhHHHHHhhhcccccc
Q psy2949         105 KGKIQHEILHSLGFWHEH  122 (367)
Q Consensus       105 ~g~i~HEigHALG~~HEh  122 (367)
                      ..+++|||||.||+.|..
T Consensus       144 a~~~AHElGHnlGm~HD~  161 (378)
T 2rjq_A          144 AFTVAHEIGHLLGLSHDD  161 (378)
T ss_dssp             HHHHHHHHHHHTTCCCTT
T ss_pred             hhhhhhhhhhhcCccCCC
Confidence            469999999999999964

>4aqb_A Mannan-binding lectin serine protease 1; blood clotting, mannan-binding protein, complement, ficolins complement pathway, mannose- binding lectin; HET: NAG BMA MAN; 4.20A {Homo sapiens}

Probab=90.11  E-value=0.17  Score=48.33  Aligned_cols=42  Identities=19%  Similarity=0.077  Sum_probs=33.1

Q ss_pred             CCcccCccccccc-cCCCCCCCCCCCCCCCCcEEEEcccCCCccccc
Q psy2949         296 KNYYQGFDIQGFY-STSGPIPDLGYLPTGSGWFYKIGGPSDDRKIMD  341 (367)
Q Consensus       296 ~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~r~~~~  341 (367)
                      .|........|.+ +|++|.+    +|++.+|.|.|.+|.+.||.+-
T Consensus       166 ~c~~~~~~~~G~i~SP~yP~~----Yp~~~~C~w~i~~~~g~~i~l~  208 (361)
T 4aqb_A          166 CSDNLFTQRTGVITSPDFPNP----YPKSSECLYTIELEEGFMVNLQ  208 (361)
T ss_dssp             CCCCCBCSSEEEEESTTTTSC----CCSSCEEEEEEECCTTCEEEEE
T ss_pred             cccceEeCCCcEEecCCCCCC----CCCCceeeEEeeeccCcEEEEE
Confidence            3434444556766 8999876    9999999999999999998874

>3p24_A BFT-3; metzincins, metalloendopeptidase, hydrolase; HET: PG4; 1.80A {Bacteroides fragilis}

Probab=90.02  E-value=0.37  Score=46.46  Aligned_cols=17  Identities=41%  Similarity=0.599  Sum_probs=15.0

Q ss_pred             chhHHHHHhhhcccccc
Q psy2949         106 GKIQHEILHSLGFWHEH  122 (367)
Q Consensus       106 g~i~HEigHALG~~HEh  122 (367)
                      .+++||+||+||+.|..
T Consensus       344 ~v~AHELGH~LGL~HD~  360 (397)
T 3p24_A          344 GVMAHELGHILGANHAD  360 (397)
T ss_dssp             THHHHHHHHHTTCCCBS
T ss_pred             HHHHHHHHHhcCCCCCC
Confidence            67999999999999863

>3lmc_A Peptidase, zinc-dependent; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, MUR16; 2.00A {Methanocorpusculum labreanum}

Probab=89.87  E-value=0.1  Score=46.44  Aligned_cols=15  Identities=40%  Similarity=0.470  Sum_probs=14.2

Q ss_pred             chhHHHHHhhhcccc
Q psy2949         106 GKIQHEILHSLGFWH  120 (367)
Q Consensus       106 g~i~HEigHALG~~H  120 (367)
                      .+++||+||.||+.|
T Consensus       145 k~~~HElGH~lGL~H  159 (210)
T 3lmc_A          145 KEGAHEIGHLFGLGH  159 (210)
T ss_dssp             HHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHhcCCCC
Confidence            689999999999999

>2i47_A ADAM 17; TACE-inhibitor complex, hydrolase; HET: INN KGY; 1.90A {Homo sapiens} SCOP: d.92.1.10 PDB: 3g42_A*

Probab=89.76  E-value=0.1  Score=48.63  Aligned_cols=18  Identities=28%  Similarity=0.331  Sum_probs=15.6

Q ss_pred             chhHHHHHhhhccccccc
Q psy2949         106 GKIQHEILHSLGFWHEHT  123 (367)
Q Consensus       106 g~i~HEigHALG~~HEh~  123 (367)
                      .+++|||||.||+.|...
T Consensus       190 ~~~AHElGHnlGm~HD~~  207 (288)
T 2i47_A          190 LVTTHELGHNFGAEHDPD  207 (288)
T ss_dssp             HHHHHHHHHHTTCCCCCC
T ss_pred             HHHHHHHHhhcCCccCCC
Confidence            578999999999999653

>2x7m_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi; 1.50A {Methanopyrus kandleri}

Probab=89.04  E-value=0.13  Score=45.43  Aligned_cols=15  Identities=33%  Similarity=0.689  Sum_probs=14.0

Q ss_pred             chhHHHHHhhhcccc
Q psy2949         106 GKIQHEILHSLGFWH  120 (367)
Q Consensus       106 g~i~HEigHALG~~H  120 (367)
                      .+++||+||.||+.|
T Consensus       141 ~~~~HElGH~lGl~H  155 (195)
T 2x7m_A          141 KELTHELGHTFGLGH  155 (195)
T ss_dssp             HHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHhhcCCCC
Confidence            678999999999999

>2e3x_A Coagulation factor X-activating enzyme light CHAI; disintegrin, metalloproteinase, C-type lectin, hydrolase, BL clotting, toxin; HET: NAG MAN GM6; 2.91A {Daboia russellii siamensis}

Probab=88.87  E-value=0.12  Score=51.03  Aligned_cols=18  Identities=33%  Similarity=0.700  Sum_probs=16.2

Q ss_pred             chhHHHHHhhhccccccc
Q psy2949         106 GKIQHEILHSLGFWHEHT  123 (367)
Q Consensus       106 g~i~HEigHALG~~HEh~  123 (367)
                      .+++|||||.||+.|...
T Consensus       141 ~t~AHElGHnlGm~HD~~  158 (427)
T 2e3x_A          141 VIMAHELSHNLGMYHDGK  158 (427)
T ss_dssp             HHHHHHHHHTTTCCCCCT
T ss_pred             eehHHHHHHhhCCccCCC
Confidence            689999999999999764

>2ero_A VAP-1, vascular apoptosis-inducing protein 1; metalloprotease, disintegrin, calcium-binding, ADAM, SVMP, M protein, toxin; HET: NAG; 2.50A {Crotalus atrox} PDB: 2erp_A* 2erq_A*

Probab=88.85  E-value=0.13  Score=50.90  Aligned_cols=18  Identities=33%  Similarity=0.525  Sum_probs=16.2

Q ss_pred             chhHHHHHhhhccccccc
Q psy2949         106 GKIQHEILHSLGFWHEHT  123 (367)
Q Consensus       106 g~i~HEigHALG~~HEh~  123 (367)
                      .+++|||||.||+.|...
T Consensus       148 ~t~AHElGHnlG~~HD~~  165 (427)
T 2ero_A          148 IAMAHEMGHNLGMDHDKD  165 (427)
T ss_dssp             HHHHHHHHHHTTCCCCCT
T ss_pred             HHHHHHHHHhcCCccCCC
Confidence            689999999999999764

>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal fluid protein, CUB domain, X-RAY growth factor; 1.90A {Bos taurus} SCOP: b.23.1.1

Probab=88.61  E-value=0.19  Score=39.83  Aligned_cols=22  Identities=9%  Similarity=0.132  Sum_probs=19.0

Q ss_pred             CCCCCCcEEEEcccCCCccccc
Q psy2949         320 LPTGSGWFYKIGGPSDDRKIMD  341 (367)
Q Consensus       320 ~~~~~~c~~~~~~~~~~r~~~~  341 (367)
                      +|++.+|.|.|.+|.+.||.+-
T Consensus        25 y~~~~~C~w~I~~~~g~~I~l~   46 (114)
T 1sfp_A           25 YGPKTNCVWTIQMPPEYHVRVS   46 (114)
T ss_dssp             CSSCSEEEEEEECCTTCEEEEE
T ss_pred             CcCCCCEEEEEEeCCCCEEEEE
Confidence            5667999999999999998764

>2dw0_A Catrocollastatin; apoptotic toxin, SVMP, metalloproteinase, apoptosis, toxin; HET: NAG BMA MAN GM6; 2.15A {Crotalus atrox} PDB: 2dw1_A* 2dw2_A* 3dsl_A* 3hdb_A*

Probab=88.58  E-value=0.14  Score=50.56  Aligned_cols=19  Identities=32%  Similarity=0.466  Sum_probs=16.6

Q ss_pred             cchhHHHHHhhhccccccc
Q psy2949         105 KGKIQHEILHSLGFWHEHT  123 (367)
Q Consensus       105 ~g~i~HEigHALG~~HEh~  123 (367)
                      ..+++|||||.||+.|...
T Consensus       138 a~t~AHElGHnlG~~HD~~  156 (419)
T 2dw0_A          138 AVIMAHEMGHNLGINHDSG  156 (419)
T ss_dssp             HHHHHHHHHHHTTCCCCCT
T ss_pred             hhhHHHHHHHHcCCccCCC
Confidence            3689999999999999764

>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra}

Probab=87.65  E-value=0.17  Score=49.54  Aligned_cols=17  Identities=41%  Similarity=0.774  Sum_probs=15.4

Q ss_pred             chhHHHHHhhhcccccc
Q psy2949         106 GKIQHEILHSLGFWHEH  122 (367)
Q Consensus       106 g~i~HEigHALG~~HEh  122 (367)
                      .+++|||||.||+.|-.
T Consensus       141 ~t~AHElGHnlGm~HD~  157 (397)
T 3k7n_A          141 STITHELGHNLGIHHDK  157 (397)
T ss_dssp             HHHHHHHHHHTTCCCCC
T ss_pred             hhHHHHHHHHcCCccCC
Confidence            68999999999999974

>3k7l_A Atragin; SVMP, metalloprotease, hydrolase; HET: NAG; 2.50A {Naja atra}

Probab=86.94  E-value=0.2  Score=49.49  Aligned_cols=18  Identities=33%  Similarity=0.543  Sum_probs=15.8

Q ss_pred             chhHHHHHhhhccccccc
Q psy2949         106 GKIQHEILHSLGFWHEHT  123 (367)
Q Consensus       106 g~i~HEigHALG~~HEh~  123 (367)
                      .+++|||||.||+.|-..
T Consensus       146 ~t~AHElGHnlGm~HD~~  163 (422)
T 3k7l_A          146 ITMAHEMGHNLGMNHDRG  163 (422)
T ss_dssp             HHHHHHHHHHTTCCCCCS
T ss_pred             HHHHHHHHHHcCCccCCC
Confidence            679999999999999753

>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A

Probab=86.68  E-value=0.32  Score=49.68  Aligned_cols=34  Identities=15%  Similarity=0.319  Sum_probs=27.8

Q ss_pred             ccccc-cCCCCCCCCCCCCCCCCcEEEEcccCC-Cccccc
Q psy2949         304 IQGFY-STSGPIPDLGYLPTGSGWFYKIGGPSD-DRKIMD  341 (367)
Q Consensus       304 ~~g~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~-~r~~~~  341 (367)
                      ..|.+ +|++|.+    ||++.+|.|.|.+|++ +||.+-
T Consensus        14 ~~G~i~SP~yP~~----Yp~~~~C~w~I~~p~~~~~I~l~   49 (579)
T 2qqk_A           14 DAGYITSPGYPQD----YPSHQNCEWIVYAPEPNQKIVLN   49 (579)
T ss_dssp             SCEEEECTTTTSC----CCSSCCEEEEEECSSTTSEEEEE
T ss_pred             CCeEEeCCCCCCC----CcCCCEEEEEEEECCCCcEEEEE
Confidence            35666 9999876    9999999999999975 777763

>1lml_A Leishmanolysin; metalloprotease, glycoprotein; 1.86A {Leishmania major} SCOP: d.92.1.3

Probab=85.67  E-value=0.24  Score=49.67  Aligned_cols=18  Identities=33%  Similarity=0.571  Sum_probs=15.7

Q ss_pred             cchhHHHHHhhhcccccc
Q psy2949         105 KGKIQHEILHSLGFWHEH  122 (367)
Q Consensus       105 ~g~i~HEigHALG~~HEh  122 (367)
                      ..+++|||+|||||....
T Consensus       160 ~~~~~HEi~HaLGFs~~~  177 (478)
T 1lml_A          160 TRVVTHEMAHALGFSGPF  177 (478)
T ss_dssp             HHHHHHHHHHHTTCSHHH
T ss_pred             HHHHHHHHHHHHccChhH
Confidence            489999999999998754

>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease M disulfide bond, glycoprotein, secreted, transport, choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo sapiens}

Probab=85.16  E-value=0.46  Score=46.89  Aligned_cols=38  Identities=13%  Similarity=0.211  Sum_probs=30.5

Q ss_pred             cCccccccc-cCCCCCCCCCCCCCCCCcEEEEcccCCCccccc
Q psy2949         300 QGFDIQGFY-STSGPIPDLGYLPTGSGWFYKIGGPSDDRKIMD  341 (367)
Q Consensus       300 ~~~~~~g~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~r~~~~  341 (367)
                      ......|.+ +|++|.+    +|.+.+|.|.|.+|.+.||.+-
T Consensus       237 ~~~~~~G~i~SP~yP~~----Yp~~~~C~w~I~~~~~~~i~l~  275 (457)
T 3kq4_B          237 NLTTSSGTFISPNYPMP----YYHSSECYWWLKSSHGSAFELE  275 (457)
T ss_dssp             CCCSSEEEEECTTTTSC----CCSSCEEEEEECCSTTCCEEEE
T ss_pred             eEccCcceeccCCCCCC----CCCCCEEEEEEEeCCCCEEEEE
Confidence            334456666 8999876    8899999999999999998763

>4gz9_A Neuropilin-1, A5 protein; multi-domain, cell-CELL signaling, plexin, semaphorin, VEGF, glycosilated, transmembrane, signaling protein; HET: NAG BMA; 2.70A {Mus musculus} PDB: 4gza_H

Probab=84.63  E-value=0.3  Score=49.98  Aligned_cols=36  Identities=22%  Similarity=0.216  Sum_probs=29.7

Q ss_pred             ccccccc-cCCCCCCCCCCCCCCCCcEEEEcccCCCccccc
Q psy2949         302 FDIQGFY-STSGPIPDLGYLPTGSGWFYKIGGPSDDRKIMD  341 (367)
Q Consensus       302 ~~~~g~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~r~~~~  341 (367)
                      ....|.+ +|++|..    +|.+.+|.|.|.+|.+.||.+.
T Consensus       134 ~~~~G~i~SPnyP~~----Yp~n~~C~W~I~~p~g~~I~L~  170 (577)
T 4gz9_A          134 TAPTGVIKSPGFPEK----YPNSLECTYIIFAPKMSEIILE  170 (577)
T ss_dssp             CSSEEEEECTTTTSC----CCSSCEEEEEEECGGGCCEEEE
T ss_pred             cCCCccccCCCCCCC----CCCCceEEEEEEECCCCEEEEE
Confidence            3345666 8999876    9999999999999999998764

>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion, cleavag of basic residues, EGF-like domain, glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A {Homo sapiens}

Probab=83.89  E-value=0.33  Score=49.00  Aligned_cols=18  Identities=11%  Similarity=0.383  Sum_probs=15.9

Q ss_pred             cchhHHHHHhhhcccccc
Q psy2949         105 KGKIQHEILHSLGFWHEH  122 (367)
Q Consensus       105 ~g~i~HEigHALG~~HEh  122 (367)
                      ..+++|||||.||+.|--
T Consensus       135 A~t~AHELGHnLGm~HD~  152 (510)
T 3g5c_A          135 AVTLAQSLAHNIGIISDK  152 (510)
T ss_dssp             HHHHHHHHHHHHTCCCCH
T ss_pred             hHHHHHHHHHHcCCccCC
Confidence            368999999999999965

>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived antibody, developmental protein, differentiation, glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A

Probab=81.93  E-value=0.6  Score=47.66  Aligned_cols=35  Identities=17%  Similarity=0.117  Sum_probs=29.3

Q ss_pred             ccccccc-cCCCCCCCCCCCCCCCCcEEEEcccCCCcccc
Q psy2949         302 FDIQGFY-STSGPIPDLGYLPTGSGWFYKIGGPSDDRKIM  340 (367)
Q Consensus       302 ~~~~g~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~r~~~  340 (367)
                      ....|.+ +|++|..    ||++.+|.|.|.+|.+.||.+
T Consensus       132 ~~~~G~i~SP~yP~~----Yp~~~~C~w~I~~~~g~~I~l  167 (579)
T 2qqk_A          132 TSPNGTIESPGFPEK----YPHNLDCTFTILAKPKMEIIL  167 (579)
T ss_dssp             CCSEEEEECTTTTSC----CCSSCEEEEEEECCTTEEEEE
T ss_pred             ccCCceecCCCCccc----CCCCCeEEEEEEcCCCCEEEE
Confidence            3455766 8999876    999999999999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	367
d1asta_	200	d.92.1.8 (A:) Astacin {European fresh water crayfi	2e-53
d1asta_	200	d.92.1.8 (A:) Astacin {European fresh water crayfi	5e-14
d1bqqm_	174	d.92.1.11 (M:) Membrane-type matrix metalloprotein	2e-04

>d1asta_ d.92.1.8 (A:) Astacin {European fresh water crayfish (Astacus astacus) [TaxId: 6715]} Length = 200

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Astacin
domain: Astacin
species: European fresh water crayfish (Astacus astacus) [TaxId: 6715]

 Score =  173 bits (439), Expect = 2e-53
 Identities = 68/194 (35%), Positives = 100/194 (51%), Gaps = 8/194 (4%)

Query: 23  LWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCAS 82
           LW    + Y F  +  +  +++ + + +Q+L   TC+RFVPRT +  Y+    +G GC S
Sbjct: 9   LWSGGVIPYTF--AGVSGADQSAILSGMQELEEKTCIRFVPRTTESDYVEIFTSGSGCWS 66

Query: 83  PVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGH 142
            VG   I     + L    C   G I HE++H++GF+HEHTR DRD +V +  +N+ P  
Sbjct: 67  YVGR--ISGAQQVSLQANGCVYHGTIIHELMHAIGFYHEHTRMDRDNYVTINYQNVDPSM 124

Query: 143 EFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKD-GVSKTIVPLYPGAEDTM-GQRDAM 200
             N +       R  G  Y Y SIMHY   +FS   GV +TIVPL  G + T    +  M
Sbjct: 125 TSNFDIDTY--SRYVGEDYQYYSIMHYGKYSFSIQWGVLETIVPLQNGIDLTDPYDKAHM 182

Query: 201 SRVDLAKLNRLYKC 214
            + D  ++N LY  
Sbjct: 183 LQTDANQINNLYTN 196

>d1asta_ d.92.1.8 (A:) Astacin {European fresh water crayfish (Astacus astacus) [TaxId: 6715]} Length = 200

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Astacin
domain: Astacin
species: European fresh water crayfish (Astacus astacus) [TaxId: 6715]

 Score = 67.9 bits (165), Expect = 5e-14
 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 215 PKNYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKD-GVSKTIVPLYPGAEDT 273
            +N       N +       R     Y Y SIMHY   +FS   GV +TIVPL  G + T
Sbjct: 117 YQNVDPSMTSNFDIDT--YSRYVGEDYQYYSIMHYGKYSFSIQWGVLETIVPLQNGIDLT 174

Query: 274 M-GQRDAMSRVDLAKLNRLYKC 294
               +  M + D  ++N LY  
Sbjct: 175 DPYDKAHMLQTDANQINNLYTN 196

>d1bqqm_ d.92.1.11 (M:) Membrane-type matrix metalloproteinase (CDMT1-MMP) {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Membrane-type matrix metalloproteinase (CDMT1-MMP)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 17/151 (11%), Positives = 31/151 (20%), Gaps = 11/151 (7%)

Query: 24  WPDKTVYYNFEDSEFTIYE---KTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGC 80
           W    + +  ++    + E      +  A +     T +RF                   
Sbjct: 6   WQHNEITFCIQNYTPKVGEYATYEAIRKAFRVWESATPLRFREVPYAYIREGHEKQA--- 62

Query: 81  ASPVGYFPIGTGIDIFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGP 140
                   I               +G                T  D  +   V  E++  
Sbjct: 63  -----DIMIFFAEGFHGDSTPFDGEGGFLAHAYFPGPNIGGDTHFDSAEPWTVRNEDLNG 117

Query: 141 GHEFNLERRPTGSVRTFGMPYDYGSIMHYSG 171
              F +     G         D  +IM    
Sbjct: 118 NDIFLVAVHELGHALGLEHSSDPSAIMAPFY 148

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	367
d1asta_	200	Astacin {European fresh water crayfish (Astacus as	100.0
d1asta_	200	Astacin {European fresh water crayfish (Astacus as	99.78
d1hy7a_	168	Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibro	99.66
d1qiba_	161	Gelatinase A {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1bqqm_	174	Membrane-type matrix metalloproteinase (CDMT1-MMP)	99.64
d1mmqa_	166	Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9	99.61
d1hfca_	157	Fibroblast collagenase (MMP-1) {Human (Homo sapien	99.61
d1y93a1	158	Macrophage elastase (MMP-12) {Human (Homo sapiens)	99.58
d1xuca1	169	Collagenase-3 (MMP-13) {Human (Homo sapiens) [TaxI	99.57
d1i76a_	163	Neutrophil collagenase (MMP-8) {Human (Homo sapien	99.56
d1hv5a_	162	Stromelysin-3 (MMP-11) {Mouse (Mus musculus) [TaxI	99.55
d2ovxa1	159	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	99.55
d1rm8a_	169	Matrix metalloproteinase-16 (MMP-16) {Human (Homo	99.51
d1kapp2	246	Metalloprotease {Pseudomonas aeruginosa [TaxId: 28	99.5
d1g9ka2	242	Metalloprotease {Pseudomonas sp., tac ii 18 [TaxId	99.49
d1k7ia2	241	Metalloprotease {Erwinia chrysanthemi [TaxId: 556]	99.46
d1sata2	243	Metalloprotease {Serratia marcescens [TaxId: 615]}	99.41
d1c7ka_	132	Zinc protease {Streptomyces caespitosus [TaxId: 53	97.44
d2qqma3	108	Mannose-binding protein associated serine protease	96.12
d1szba1	121	Mannose-binding protein associated serine protease	95.7
d1nzia1	117	Complement C1S component {Human (Homo sapiens) [Ta	95.56
d1nt0a2	114	Mannose-binding protein associated serine protease	95.21
d1bswa_	197	Snake venom metalloprotease {Five-pace snake (Agki	93.65
d1quaa_	197	Snake venom metalloprotease {Chinese five-pace sna	93.29
d2i47a1	254	TNF-alpha converting enzyme, TACE, catalytic domai	93.18
d1atla_	200	Snake venom metalloprotease {Western diamonback ra	93.12
d1kufa_	201	Snake venom metalloprotease {Taiwan habu (Trimeres	93.03
d1r55a_	203	ADAM33 {Human (Homo sapiens) [TaxId: 9606]}	93.03
d1nd1a_	202	Snake venom metalloprotease {Terciopelo (Bothrops	92.86
d1bqqm_	174	Membrane-type matrix metalloproteinase (CDMT1-MMP)	91.39
d1sfpa_	111	Acidic seminal fluid protein (ASFP) {Cow (Bos taur	91.25
d1sppa_	109	Major seminal plasma glycoprotein PSP-I {Pig (Sus	90.23
d1sppb_	112	Major seminal plasma glycoprotein PSP-II {Pig (Sus	86.18
d1lmla_	475	Leishmanolysin {Leishmania major [TaxId: 5664]}	83.4

>d1asta_ d.92.1.8 (A:) Astacin {European fresh water crayfish (Astacus astacus) [TaxId: 6715]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Astacin
domain: Astacin
species: European fresh water crayfish (Astacus astacus) [TaxId: 6715]

Probab=100.00  E-value=5.9e-58  Score=412.19  Aligned_cols=193  Identities=33%  Similarity=0.585  Sum_probs=175.6

Q ss_pred             ccccCCCCcCCCeeEEEEcCCCCCHHHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEEecCCCCccCCCCCCCCCccccc
Q psy2949          16 LVLYQAQLWPDKTVYYNFEDSEFTIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRNTGFGCASPVGYFPIGTGIDI   95 (367)
Q Consensus        16 a~~~~~~~Wp~~~VpY~~~~~~~~~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i~~~~~gc~S~vG~~~g~q~i~~   95 (367)
                      |+..+..+||+++|||.| + +++..+++.|++||++|++.|||||++++.+.++|.|+..+.||||+||+.++.|.|+.
T Consensus         2 ai~~~~~~Wp~~~VpY~~-~-~~~~~~~~~I~~A~~~~~~~TcirF~~r~~~~~~i~~~~~~~gC~S~vG~~~g~q~~~l   79 (200)
T d1asta_           2 AILGDEYLWSGGVIPYTF-A-GVSGADQSAILSGMQELEEKTCIRFVPRTTESDYVEIFTSGSGCWSYVGRISGAQQVSL   79 (200)
T ss_dssp             EESCGGGSCGGGEEEEEE-E-SCCHHHHHHHHHHHHHHHHHSSCEEEECSSCSSEEEEESSSSSEEECSSCCSSEEEEEE
T ss_pred             CccCccccCCCCEEEEEE-C-CCCHHHHHHHHHHHHHHHhCcCceeeeCCCCCCcEEEecCCCcccccCCeECCcceEEe
Confidence            667788899999999999 4 47899999999999999999999999999999999988778999999999999999882


Q ss_pred             ccCCCcccccchhHHHHHhhhcccccccCCCCCcceEEeeCCcCCCCCcccccCCCCcccccCCcCCCCCCcCcccceec
Q psy2949          96 FLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFS  175 (367)
Q Consensus        96 ~~l~~~c~~~g~i~HEigHALG~~HEh~rpDRD~yv~I~~~ni~~~~~~nf~k~~~~~~~~~g~~YD~~SIMhY~~~~fs  175 (367)
                        .+.+|...|+|+|||||||||+|||+|||||+||.|+|+||.++...||.|++..  ..+|+||||+|||||++.+||
T Consensus        80 --~~~~c~~~g~i~HEl~HaLGf~HEh~RpDRD~yV~i~~~ni~~~~~~nF~~~~~~--~~~g~~YDy~SIMHY~~~afs  155 (200)
T d1asta_          80 --QANGCVYHGTIIHELMHAIGFYHEHTRMDRDNYVTINYQNVDPSMTSNFDIDTYS--RYVGEDYQYYSIMHYGKYSFS  155 (200)
T ss_dssp             --CTTTTCSHHHHHHHHHHHHTBCCGGGSTTGGGTEEECGGGBCTTSGGGGCCCSSE--ECCSCCCCTTCTTCCCTTTTB
T ss_pred             --CCCCcCccCccHHHHHHHhcccchhhcccccceEEEeeeccCcchhhhhhhcccc--cccccccCccchhcccccccc
Confidence              2568999999999999999999999999999999999999999999999997654  346899999999999999999


Q ss_pred             cCCC-cceeeeCCCCC-CCccCccccccHHHHHHHHHHhcC
Q psy2949         176 KDGV-SKTIVPLYPGA-EDTMGQRDAMSRVDLAKLNRLYKC  214 (367)
Q Consensus       176 ~~~~-~~ti~~~~~~~-~~~IG~r~~lS~~D~~~in~lY~C  214 (367)
                      +++. .+||+|+++.. ...+|++.+||..|+++||+||.|
T Consensus       156 ~n~~~~~Ti~~~~~~~~~~~~gqr~~lS~~Di~~in~~Y~c  196 (200)
T d1asta_         156 IQWGVLETIVPLQNGIDLTDPYDKAHMLQTDANQINNLYTN  196 (200)
T ss_dssp             TTTTTSCSEEESSTTCCCCCGGGCSSCCHHHHHHHHHHTHH
T ss_pred             cCCCCCCcceECCCCccccCcccccCCCHHHHHHHHHHhCC
Confidence            9875 58999998764 356899999999999999999987

>d1asta_ d.92.1.8 (A:) Astacin {European fresh water crayfish (Astacus astacus) [TaxId: 6715]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Astacin
domain: Astacin
species: European fresh water crayfish (Astacus astacus) [TaxId: 6715]

Probab=99.78  E-value=2.1e-20  Score=166.37  Aligned_cols=100  Identities=26%  Similarity=0.329  Sum_probs=87.1

Q ss_pred             CccCccccccHHHHHHHHHHhcCCCCcccCcccccccCCCCcccccccCCCCCCcccccccccccCCC-ceeeeeCCCCC
Q psy2949         192 DTMGQRDAMSRVDLAKLNRLYKCPKNYYQGHEFNLERRPAGSVRTFSMPYDYGSIMHYSGIAFSKDGV-SKTIVPLYPGA  270 (367)
Q Consensus       192 ~~IG~r~~lS~~D~~~in~lY~C~~nI~~g~~~Nf~~~~~~~~~~~~~pYDy~SiMhY~~~~fs~~~~-~~ti~~~~~~~  270 (367)
                      |+||..|+.++.|++....+.  .+||.++...||.+.+..  ..+++||||+|||||++.+||+++. .+||+|+++..
T Consensus        96 HaLGf~HEh~RpDRD~yV~i~--~~ni~~~~~~nF~~~~~~--~~~g~~YDy~SIMHY~~~afs~n~~~~~Ti~~~~~~~  171 (200)
T d1asta_          96 HAIGFYHEHTRMDRDNYVTIN--YQNVDPSMTSNFDIDTYS--RYVGEDYQYYSIMHYGKYSFSIQWGVLETIVPLQNGI  171 (200)
T ss_dssp             HHHTBCCGGGSTTGGGTEEEC--GGGBCTTSGGGGCCCSSE--ECCSCCCCTTCTTCCCTTTTBTTTTTSCSEEESSTTC
T ss_pred             HHhcccchhhcccccceEEEe--eeccCcchhhhhhhcccc--cccccccCccchhcccccccccCCCCCCcceECCCCc
Confidence            789999999999999866554  479999999999987654  4679999999999999999999875 68999997765


Q ss_pred             c-cccccccCCCHHHHHHHhhhccCC
Q psy2949         271 E-DTMGQRDAMSRVDLAKLNRLYKCP  295 (367)
Q Consensus       271 ~-~~~gqr~~~s~~D~~~in~~Y~C~  295 (367)
                      . ..+|||.+||+.|+++||+||+|.
T Consensus       172 ~~~~~gqr~~lS~~Di~~in~~Y~c~  197 (200)
T d1asta_         172 DLTDPYDKAHMLQTDANQINNLYTNE  197 (200)
T ss_dssp             CCCCGGGCSSCCHHHHHHHHHHTHHH
T ss_pred             cccCcccccCCCHHHHHHHHHHhCCC
Confidence            4 458999999999999999999994

>d1hy7a_ d.92.1.11 (A:) Stromelysin-1 (MMP-3) {Human (Homo sapiens), fibroblast [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Stromelysin-1 (MMP-3)
species: Human (Homo sapiens), fibroblast [TaxId: 9606]

Probab=99.66  E-value=4.3e-16  Score=133.31  Aligned_cols=100  Identities=18%  Similarity=0.053  Sum_probs=60.5

Q ss_pred             CCcCCCeeEEEEcCCC---C-CHHHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEE-ecC--CCCccCCCCCCC------
Q psy2949          22 QLWPDKTVYYNFEDSE---F-TIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRF-RNT--GFGCASPVGYFP------   88 (367)
Q Consensus        22 ~~Wp~~~VpY~~~~~~---~-~~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i-~~~--~~gc~S~vG~~~------   88 (367)
                      .||++.+|+|.| ...   . .+.+++.|++||+.|++.+||+|+++.....-+.+ ...  ...+....+..+      
T Consensus         8 pkW~~~~iTY~i-~~~~~~~~~~~~~~~i~~A~~~W~~~~~i~F~e~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (168)
T d1hy7a_           8 PKWRKTHLTYRI-VNYTPDLPKDAVDSAVEKALKVWEEVTPLTFSRLYEGEADIMISFAVREHGDFYPFDGPGNVLAHAY   86 (168)
T ss_dssp             CCCSSSEEEEEE-CCBCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECSSSCCSEEEEEECSSCSSSCCCCSSSSCCEEEC
T ss_pred             CCCCCCeEeEEE-ecCCCCCCHHHHHHHHHHHHHHHHhhcCceeEeccCCcCceEEEeeccccccccccccccccccccc
Confidence            479999999999 322   2 24578999999999999999999999844333333 221  112221111100      


Q ss_pred             -------CCcccccc----cCCCcccccchhHHHHHhhhcccccc
Q psy2949          89 -------IGTGIDIF----LGGRVCFLKGKIQHEILHSLGFWHEH  122 (367)
Q Consensus        89 -------g~q~i~~~----~l~~~c~~~g~i~HEigHALG~~HEh  122 (367)
                             +...++..    ..........+++|||||||||.|++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~HEiGHALGL~H~~  131 (168)
T d1hy7a_          87 APGPGINGDAHFDDDEQWTKDTTGTNLFLVAAHEIGHSLGLFHSA  131 (168)
T ss_dssp             CSSSTTTTCEEEETTSCEESSSSSEEHHHHHHHHHHHHHTBCCCS
T ss_pred             cCCCCeeeeEeeccccccccccccccceeeeHhhhccccCCCcCC
Confidence                   11111100    01112222369999999999999964

>d1qiba_ d.92.1.11 (A:) Gelatinase A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Gelatinase A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=6.6e-16  Score=131.05  Aligned_cols=100  Identities=17%  Similarity=0.106  Sum_probs=60.4

Q ss_pred             CCcCCCeeEEEEcCCC---CC-HHHHHHHHHHHHHHHHcCCcEEEEcCCCC-ceEEEecCCCC-----ccCCCCCC----
Q psy2949          22 QLWPDKTVYYNFEDSE---FT-IYEKTLVENAIQDLRMHTCVRFVPRTNQD-TYLRFRNTGFG-----CASPVGYF----   87 (367)
Q Consensus        22 ~~Wp~~~VpY~~~~~~---~~-~~~~~~I~~A~~~w~~~tci~F~~~~~~~-~~I~i~~~~~g-----c~S~vG~~----   87 (367)
                      -||++.+|+|+| ...   ++ .+++++|++||+.|++.++|+|++..... +.+.+......     +....|..    
T Consensus         3 ~kW~~~~iTY~i-~~~~~~~~~~~~~~~v~~A~~~W~~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (161)
T d1qiba_           3 PKWDKNQITYRI-IGYTPDLDPETVDDAFARAFQVWSDVTPLRFSRIHDGEADIMINFGRWEHGDGYPFDGKDGLLAHAF   81 (161)
T ss_dssp             CCCSSSEEEEEE-CCCCTTSCHHHHHHHHHHHHHHHHTSSSCEEEECSSSCCSEEEEEECSCCSSSCCCCSSSSCCEEEC
T ss_pred             CCCCCCeEEEEE-ecCCCCCCHHHHHHHHHHHHHHHHhhcCcceEEccCCcCceEEEeccccccccccccCcccceeeee
Confidence            389999999999 322   22 35789999999999999999999998443 33333222111     11111110    


Q ss_pred             -C-----CCccccc-----ccCCCcccccchhHHHHHhhhcccccc
Q psy2949          88 -P-----IGTGIDI-----FLGGRVCFLKGKIQHEILHSLGFWHEH  122 (367)
Q Consensus        88 -~-----g~q~i~~-----~~l~~~c~~~g~i~HEigHALG~~HEh  122 (367)
                       .     +...++.     .....+-....+++|||||||||.|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HEiGHaLGL~H~~  127 (161)
T d1qiba_          82 APGTGVGGDSHFDDDELWSLGKGVGYSLFLVAAHEFGHAMGLEHSQ  127 (161)
T ss_dssp             CSCSTTTTCEEEETTSCEESSSSSSEEHHHHHHHHHHHHHTCCCCS
T ss_pred             cCCCCcccceeecchhcccccccccchhheeeeecccccccCCCCC
Confidence             0     0111110     000111122369999999999999975

>d1bqqm_ d.92.1.11 (M:) Membrane-type matrix metalloproteinase (CDMT1-MMP) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Membrane-type matrix metalloproteinase (CDMT1-MMP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=5.4e-16  Score=132.23  Aligned_cols=46  Identities=13%  Similarity=0.230  Sum_probs=37.7

Q ss_pred             CCCCcCCCeeEEEEcC--CCC-CHHHHHHHHHHHHHHHHcCCcEEEEcC
Q psy2949          20 QAQLWPDKTVYYNFED--SEF-TIYEKTLVENAIQDLRMHTCVRFVPRT   65 (367)
Q Consensus        20 ~~~~Wp~~~VpY~~~~--~~~-~~~~~~~I~~A~~~w~~~tci~F~~~~   65 (367)
                      ...+||+.+|+|+|..  +.+ +..+++.|++||+.|++.+||+|++..
T Consensus         2 ~G~kW~~~~ity~~~~~~~~~~~~~~~~~i~~A~~~W~~~~~i~f~~~~   50 (174)
T d1bqqm_           2 QGLKWQHNEITFCIQNYTPKVGEYATYEAIRKAFRVWESATPLRFREVP   50 (174)
T ss_dssp             CSCCCSCSEEECEECCCCTTTCHHHHHHHHHHHHHHHHHHSSCEEECCS
T ss_pred             cCCCCCCCeEEEEEeccCCCCCHHHHHHHHHHHHHHHHHhcCcceeeec
Confidence            3578999999999931  122 346789999999999999999999877

>d1mmqa_ d.92.1.11 (A:) Matrilysin (MMP-7) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Matrilysin (MMP-7)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.9e-15  Score=127.56  Aligned_cols=101  Identities=19%  Similarity=0.058  Sum_probs=62.1

Q ss_pred             CCCcCCCeeEEEEcCCC---C-CHHHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEEec--CC-CCccCCCCCC------
Q psy2949          21 AQLWPDKTVYYNFEDSE---F-TIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFRN--TG-FGCASPVGYF------   87 (367)
Q Consensus        21 ~~~Wp~~~VpY~~~~~~---~-~~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i~~--~~-~gc~S~vG~~------   87 (367)
                      ..|||..+|.|+| ...   . ..++++.|++|++.|+..+.|+|++++....-|.|..  .. ..+...-|..      
T Consensus         7 ~~kW~~~~iTY~i-~~~~~~~~~~~~~~~i~~A~~~W~~v~~i~F~~v~~~~~di~i~~~~~~~~~~~~~~~~~~~~~~~   85 (166)
T d1mmqa_           7 SPKWTSKVVTYRI-VSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGNTLAHA   85 (166)
T ss_dssp             CCCCCSSEEEEEE-CCCCTTSCHHHHHHHHHHHHHHHHHHSSCEEEECSSSCCSEEEEEECSCCSSSCCCCSSSSCCEEE
T ss_pred             CCCCCCCceEEEE-ecCCCCCCHHHHHHHHHHHHHHHhCcCCeeEEecccCCcceEEEEeccccCCcccccccceeeeec
Confidence            3489999999999 432   1 3468899999999999999999999985444455532  11 1121111110      


Q ss_pred             -------CCCcccc-----cccCCCcccccchhHHHHHhhhcccccc
Q psy2949          88 -------PIGTGID-----IFLGGRVCFLKGKIQHEILHSLGFWHEH  122 (367)
Q Consensus        88 -------~g~q~i~-----~~~l~~~c~~~g~i~HEigHALG~~HEh  122 (367)
                             .+...++     ............+++|||||||||.|++
T Consensus        86 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~v~~HEiGHaLGL~H~~  132 (166)
T d1mmqa_          86 FAPGTGLGGDAHFDEDERWTDGSSLGINFLYAATHELGHSLGMGHSS  132 (166)
T ss_dssp             CCSSSTTTTCEEEETTSCEESSSSSSEEHHHHHHHHHHHHHTBCCCS
T ss_pred             cCCCccccceEEecchhhhhccccccchhhhhhhhhhccccCCCCCC
Confidence                   0111111     0001122223369999999999999964

>d1hfca_ d.92.1.11 (A:) Fibroblast collagenase (MMP-1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Fibroblast collagenase (MMP-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=6.6e-15  Score=124.35  Aligned_cols=100  Identities=19%  Similarity=0.181  Sum_probs=60.6

Q ss_pred             CcCCCeeEEEEcC--CCCC-HHHHHHHHHHHHHHHHcCCcEEEEcCCCCce--EEEecCCCCc-------cCCCCCC---
Q psy2949          23 LWPDKTVYYNFED--SEFT-IYEKTLVENAIQDLRMHTCVRFVPRTNQDTY--LRFRNTGFGC-------ASPVGYF---   87 (367)
Q Consensus        23 ~Wp~~~VpY~~~~--~~~~-~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~--I~i~~~~~gc-------~S~vG~~---   87 (367)
                      ||++.+|+|+|..  +.++ +.++++|++||+.|++.++|+|++++....-  +.+.....++       ....+..   
T Consensus         2 rW~~~~itY~~~~~~~~~~~~~~~~~i~~A~~~W~~~~~i~F~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (157)
T d1hfca_           2 RWEQTHLTYRIENYTPDLPRADVDHAIEKAFQLWSNVTPLTFTKVSEGQADIMISFVRGDHRDNSPFDGPGGNLAHAFQP   81 (157)
T ss_dssp             CCSCSEEEEEECCCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECSSSCCSEEEEEECSSCSSSCCCCSSSSCCEEECCS
T ss_pred             CCCCCeeEEEEecCCCCCCHHHHHHHHHHHHHHHHhhcCccEEEeccCCcccceeeeccccccccccCCCcceeEEeecC
Confidence            7999999999932  1122 4678999999999999999999999843332  2232222222       1111110   


Q ss_pred             ----CCCccccc----ccCCCcccccchhHHHHHhhhcccccc
Q psy2949          88 ----PIGTGIDI----FLGGRVCFLKGKIQHEILHSLGFWHEH  122 (367)
Q Consensus        88 ----~g~q~i~~----~~l~~~c~~~g~i~HEigHALG~~HEh  122 (367)
                          ++...++.    .....+.....+++|||||||||.|.+
T Consensus        82 ~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~HEiGHaLGL~H~~  124 (157)
T d1hfca_          82 GPGIGGDAHFDEDERWTNNFREYNLHRVAAHELGHSLGLSHST  124 (157)
T ss_dssp             SSTTTTCEEEETTSCCBSSSSSCBHHHHHHHHHHHHHTCCCCS
T ss_pred             CCCeeeeEEeccccccccccccchhhhhHhhhhhhhccCCCCC
Confidence                11111220    000122223479999999999999953

>d1y93a1 d.92.1.11 (A:106-263) Macrophage elastase (MMP-12) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Macrophage elastase (MMP-12)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=7.6e-15  Score=124.08  Aligned_cols=51  Identities=12%  Similarity=0.139  Sum_probs=39.6

Q ss_pred             CCcCCCeeEEEEcCCC---C-CHHHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEE
Q psy2949          22 QLWPDKTVYYNFEDSE---F-TIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRF   73 (367)
Q Consensus        22 ~~Wp~~~VpY~~~~~~---~-~~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i   73 (367)
                      -||.+.+|+|+| ...   . ..+.+++|++|++.|+..+.|+|++.......+.+
T Consensus         2 ~kW~~~~itY~~-~~~~~~~~~~~~~~~i~~a~~~w~~~~~i~F~~~~~~~~~~~~   56 (158)
T d1y93a1           2 PVWRKHYITYRI-NNYTPDMNREDVDYAIRKAFQVWSNVTPLKFSKINTGMADILV   56 (158)
T ss_dssp             CCCSSSEEEEEE-CCCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECSSSCCSEEE
T ss_pred             CCCCCCeEEEEE-ecCCCCCCHHHHHHHHHHHHHHHHhhcCceEEecccCCcceEE
Confidence            489999999999 422   2 24568999999999999999999998844444434

>d1xuca1 d.92.1.11 (A:104-272) Collagenase-3 (MMP-13) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Collagenase-3 (MMP-13)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.7e-14  Score=123.44  Aligned_cols=46  Identities=13%  Similarity=0.148  Sum_probs=38.1

Q ss_pred             CCCCcCCCeeEEEEcCCC---CC-HHHHHHHHHHHHHHHHcCCcEEEEcCC
Q psy2949          20 QAQLWPDKTVYYNFEDSE---FT-IYEKTLVENAIQDLRMHTCVRFVPRTN   66 (367)
Q Consensus        20 ~~~~Wp~~~VpY~~~~~~---~~-~~~~~~I~~A~~~w~~~tci~F~~~~~   66 (367)
                      ...||++.+|+|.| ...   .+ ..+++.|++||+.|++.++|+|+++..
T Consensus         6 g~~kW~~~~iTY~i-~~~~~~~~~~~~~~~i~~Af~~W~~~~~i~f~ev~~   55 (169)
T d1xuca1           6 RTLKWSKMNLTYRI-VNYTPDMTHSEVEKAFKKAFKVWSDVTPLNFTRLHD   55 (169)
T ss_dssp             SBCCCSCSEEEEEE-CCCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEEESS
T ss_pred             CCCCCCCCeEEEEE-ecCCCCCCHHHHHHHHHHHHHHHHhhcCccEEEecc
Confidence            34699999999999 432   22 357899999999999999999999883

>d1i76a_ d.92.1.11 (A:) Neutrophil collagenase (MMP-8) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Neutrophil collagenase (MMP-8)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3e-14  Score=121.46  Aligned_cols=102  Identities=13%  Similarity=0.184  Sum_probs=61.2

Q ss_pred             CCCcCCCeeEEEEcC--CCC-CHHHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEEe--cCCC-CccCC------CCC--
Q psy2949          21 AQLWPDKTVYYNFED--SEF-TIYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRFR--NTGF-GCASP------VGY--   86 (367)
Q Consensus        21 ~~~Wp~~~VpY~~~~--~~~-~~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i~--~~~~-gc~S~------vG~--   86 (367)
                      ..||++.+|+|.|..  ..+ ..++++.|++|++.|+..+.|+|++++....-+.+.  .... .....      ++.  
T Consensus         6 ~~kW~~~~iTY~~~~~~~~~~~~~~~~~i~~Af~~ws~v~~i~F~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (163)
T d1i76a_           6 NPKWERTNLTYRIRNYTPQLSEAEVERAIKDAFELWSVASPLIFTRISQGEADINIAFYQRDHGDNSPFDGPNGILAHAF   85 (163)
T ss_dssp             CCCCSCSEEEEEECCCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECSSSCCSEEEEEECSCCSSSCCCCSSSSCCEEEC
T ss_pred             CCCCCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHhcccCceEEEecCCCcceEEEeeecccccccccCCcccceeecc
Confidence            468999999999932  222 245689999999999999999999998443333332  2111 11111      111  


Q ss_pred             C-----CCCcccc---cccCCCccc-ccchhHHHHHhhhcccccc
Q psy2949          87 F-----PIGTGID---IFLGGRVCF-LKGKIQHEILHSLGFWHEH  122 (367)
Q Consensus        87 ~-----~g~q~i~---~~~l~~~c~-~~g~i~HEigHALG~~HEh  122 (367)
                      .     .+...++   ......... ...+++|||||||||.|.+
T Consensus        86 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~HEiGHaLGL~H~~  130 (163)
T d1i76a_          86 QPGQGIGGDAHFDAEETWTNTSANYNLFLVAAHEFGHSLGLAHSS  130 (163)
T ss_dssp             CSSSTTTTCEEEETTSCCBSSSSSCBHHHHHHHHHHHHHTBCCCS
T ss_pred             CCCCceeeEEeeccccccccccccchheeehhhhhhhhhccCCCC
Confidence            0     0111111   000111111 2479999999999999975

>d1hv5a_ d.92.1.11 (A:) Stromelysin-3 (MMP-11) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Stromelysin-3 (MMP-11)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=1.4e-14  Score=123.75  Aligned_cols=103  Identities=17%  Similarity=0.133  Sum_probs=62.3

Q ss_pred             CCCCcCCCeeEEEEcC--CCCC-HHHHHHHHHHHHHHHHcCCcEEEEcCCCCceEEE--ecCC--CCccCC-----CCC-
Q psy2949          20 QAQLWPDKTVYYNFED--SEFT-IYEKTLVENAIQDLRMHTCVRFVPRTNQDTYLRF--RNTG--FGCASP-----VGY-   86 (367)
Q Consensus        20 ~~~~Wp~~~VpY~~~~--~~~~-~~~~~~I~~A~~~w~~~tci~F~~~~~~~~~I~i--~~~~--~gc~S~-----vG~-   86 (367)
                      ...||++.+|+|+|..  .+++ .+++++|++||+.|+..++|+|+++.+...-|.|  ....  .++.+.     ++. 
T Consensus         5 ~G~kW~~~~iTY~~~~~~~~~~~~~~~~~i~~A~~~W~~v~~i~F~ev~~~~~di~i~~~~~~~~~~~~~~~~~~~~~~~   84 (162)
T d1hv5a_           5 SGGRWEKTDLTYRILRFPWQLVREQVRQTVAEALQVWSEVTPLTFTEVHEGRADIMIDFARYWHGDNLPFDGPGGILAHA   84 (162)
T ss_dssp             ETTEEEECEEEEEECSCCTTSCHHHHHHHHHHHHHHHHTTSSCEEEECSSSBCSEEEEEECSCSSSSCCCCSSSSCCEEE
T ss_pred             cCCcCCCCeEEEEEEecCCCCCHHHHHHHHHHHHHHHhccCCceEEEeecCCCceEEEEeccccCCcccccCCCceeeee
Confidence            3459999999999932  2233 4568899999999999999999998743333444  2221  111111     111 


Q ss_pred             -CCC---C--cccc---cc--cCCCcccccchhHHHHHhhhcccccc
Q psy2949          87 -FPI---G--TGID---IF--LGGRVCFLKGKIQHEILHSLGFWHEH  122 (367)
Q Consensus        87 -~~g---~--q~i~---~~--~l~~~c~~~g~i~HEigHALG~~HEh  122 (367)
                       .++   .  ..++   ..  ....+.....+++|||||||||.|++
T Consensus        85 ~~~~~~~~~~i~~~~~~~~~~~~~~g~~~~~v~~HEiGHaLGL~H~~  131 (162)
T d1hv5a_          85 FFPKTHREGDVHFDYDETWTIGDNQGTDLLQVAAHEFGHVLGLQHTT  131 (162)
T ss_dssp             ECCTTSSSEEEEEETTSCEESSCSSSEEHHHHHHHHHHHHTTCCCCS
T ss_pred             ecCCCccccceeecchhccccccccCcchhhhhhhhhhhhccCCCCC
Confidence             011   1  1111   11  11223333579999999999999943

>d2ovxa1 d.92.1.11 (A:110-443) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.3e-14  Score=120.43  Aligned_cols=101  Identities=14%  Similarity=0.118  Sum_probs=62.1

Q ss_pred             CCCcCCCeeEEEEcC--CCC-CHHHHHHHHHHHHHHHHcCCcEEEEcC-CCCceEEEecCC-----CCccCCCCCC----
Q psy2949          21 AQLWPDKTVYYNFED--SEF-TIYEKTLVENAIQDLRMHTCVRFVPRT-NQDTYLRFRNTG-----FGCASPVGYF----   87 (367)
Q Consensus        21 ~~~Wp~~~VpY~~~~--~~~-~~~~~~~I~~A~~~w~~~tci~F~~~~-~~~~~I~i~~~~-----~gc~S~vG~~----   87 (367)
                      ..||++.+|.|+|..  ..+ .+.++++|++|++.|++.+.|+|++++ ...+.+.+....     .+|+...|..    
T Consensus         4 ~~kW~~~~lTy~i~~~~~~~~~~~~~~~i~~A~~~W~~~~~i~F~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (159)
T d2ovxa1           4 DLKWHHHNITYWIQNYSEDLPRAVIDDAFARAFALWSAVTPLTFTRVYSRDADIVIQFGVAEHGDGYPFDGKDGLLAHAF   83 (159)
T ss_dssp             SCCCSCSEEEEEECCCCTTSCHHHHHHHHHHHHHHHHTSSSCEEEECSSTTSSEEEEEECSSCSSSCCCCSSSSCCEEEC
T ss_pred             CCccCCCEEEEEEeccCCCCCHHHHHHHHHHHHHHHHccCCceEEEecCCCCceEEEEeecccCCcccCCCcccceeccc
Confidence            358999999999931  122 245688999999999999999999987 344555543321     2232222210    


Q ss_pred             ------CCCccccc-----ccCCCcccccchhHHHHHhhhccccc
Q psy2949          88 ------PIGTGIDI-----FLGGRVCFLKGKIQHEILHSLGFWHE  121 (367)
Q Consensus        88 ------~g~q~i~~-----~~l~~~c~~~g~i~HEigHALG~~HE  121 (367)
                            .+...++.     .....+-....+++|||||||||.|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~HElGHaLGL~H~  128 (159)
T d2ovxa1          84 PPGPGIQGDAHFDDDELWSLGKGQGYSLFLVAAHQFGHALGLDHS  128 (159)
T ss_dssp             CSSSTTTTCEEEETTSCEECSSSSSEEHHHHHHHHHHHHTTCCCC
T ss_pred             cCCCceeeeEeeccceeeccCCccccceeeeehhhhcccccCCCC
Confidence                  11222220     00111222236999999999999994

>d1rm8a_ d.92.1.11 (A:) Matrix metalloproteinase-16 (MMP-16) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Matrix metalloproteinase-16 (MMP-16)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.3e-13  Score=117.11  Aligned_cols=44  Identities=16%  Similarity=0.271  Sum_probs=36.4

Q ss_pred             CCcCCCeeEEEEcC--CCC-CHHHHHHHHHHHHHHHHcCCcEEEEcC
Q psy2949          22 QLWPDKTVYYNFED--SEF-TIYEKTLVENAIQDLRMHTCVRFVPRT   65 (367)
Q Consensus        22 ~~Wp~~~VpY~~~~--~~~-~~~~~~~I~~A~~~w~~~tci~F~~~~   65 (367)
                      .||++.+|.|+|..  +.+ ...++++|++|++.|++.++|+|+++.
T Consensus         2 ~kW~~~~iTy~~~~~~~~~~~~~~~~~i~~Af~~W~~~~~i~F~~v~   48 (169)
T d1rm8a_           2 QKWQHKHITYSIKNVTPKVGDPETRKAIRRAFDVWQNVTPLTFEEVP   48 (169)
T ss_dssp             CCCSSSEEEEEECCCCTTTCHHHHHHHHHHHHHHHHTTSSCEEEECC
T ss_pred             CCCCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCcceEEec
Confidence            58999999999931  122 245788999999999999999999986

>d1kapp2 d.92.1.6 (P:1-246) Metalloprotease {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Serralysin-like metalloprotease, catalytic (N-terminal) domain
domain: Metalloprotease
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.50  E-value=1.7e-13  Score=124.92  Aligned_cols=143  Identities=17%  Similarity=0.118  Sum_probs=81.6

Q ss_pred             CCHHHHHHHHHHHHHHHHcCCcEEEEcC-CCCceEEEec--CCCCc--cCCCCCC----CCCcccc-------cccCCCc
Q psy2949          38 FTIYEKTLVENAIQDLRMHTCVRFVPRT-NQDTYLRFRN--TGFGC--ASPVGYF----PIGTGID-------IFLGGRV  101 (367)
Q Consensus        38 ~~~~~~~~I~~A~~~w~~~tci~F~~~~-~~~~~I~i~~--~~~gc--~S~vG~~----~g~q~i~-------~~~l~~~  101 (367)
                      |++.++++|++||+.|+..++|+|+|++ ....-|+|..  ...+.  +++....    ++.-.++       ......+
T Consensus        88 ~s~~q~~~vr~A~~~ws~va~i~F~ev~~~~~adI~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  167 (246)
T d1kapp2          88 FSAQQQAQAKLSLQSWSDVTNIHFVDAGQGDQGDLTFGNFSSSVGGAAFAFLPDVPDALKGQSWYLINSSYSANVNPANG  167 (246)
T ss_dssp             CCHHHHHHHHHHHHHHHTTBSEEEEEEEESSCSSEEEEEECSCCSSSEEECCTTSCTTTTTEEEEECSSSCCTTTSCCTT
T ss_pred             CCHHHHHHHHHHHHHHHHhhCcceeeccCCCceEEEEEEeCCCCCCeeEeccCCCCcccccccccccccccccccCcccc
Confidence            4688999999999999999999999987 4455566632  22222  2222111    1111111       0011234


Q ss_pred             ccccchhHHHHHhhhcccccccCCCCCcceEEeeCCcCCCCCcccccCCCCcccccCCcCCCCCCcCcccceeccCCCcc
Q psy2949         102 CFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTFGMPYDYGSIMHYSGIAFSKDGVSK  181 (367)
Q Consensus       102 c~~~g~i~HEigHALG~~HEh~rpDRD~yv~I~~~ni~~~~~~nf~k~~~~~~~~~g~~YD~~SIMhY~~~~fs~~~~~~  181 (367)
                      .....|++|||||||||.|+|.....+..             ..+....      ........|||+|..........  
T Consensus       168 ~~~~~t~lHEIGHaLGL~Hp~d~~~~~~~-------------~~~~~~~------~~~d~~~~TVMSY~~~~~~~~~~--  226 (246)
T d1kapp2         168 NYGRQTLTHEIGHTLGLSHPGDYNAGEGD-------------PTYADAT------YAEDTRAYSVMSYWEEQNTGQDF--  226 (246)
T ss_dssp             SHHHHHHHHHHHHHHTCCCSSSCCTTSSC-------------CCGGGCS------STTCSTTTCTTCCSCGGGGTCBC--
T ss_pred             hhHHHHHHHHHHHhhCCCcCCCCccccCC-------------ccccccc------ccccCCcceeeccCCcCCCCccc--
Confidence            44456999999999999999976543211             0000000      11112234999996543211111  


Q ss_pred             eeeeCCCCCCCccCccccccHHHHHHHHHHh
Q psy2949         182 TIVPLYPGAEDTMGQRDAMSRVDLAKLNRLY  212 (367)
Q Consensus       182 ti~~~~~~~~~~IG~r~~lS~~D~~~in~lY  212 (367)
                                 .-+....+...||+.|..||
T Consensus       227 -----------~~~~~~tp~~~DI~AiQ~LY  246 (246)
T d1kapp2         227 -----------KGAYSSAPLLDDIAAIQKLY  246 (246)
T ss_dssp             -----------TTCCCSSCCHHHHHHHHHHH
T ss_pred             -----------cccccCCCCHHHHHHHHHhC
Confidence                       01222446778999999998

>d1g9ka2 d.92.1.6 (A:3-244) Metalloprotease {Pseudomonas sp., tac ii 18 [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Serralysin-like metalloprotease, catalytic (N-terminal) domain
domain: Metalloprotease
species: Pseudomonas sp., tac ii 18 [TaxId: 306]

Probab=99.49  E-value=2.5e-13  Score=123.40  Aligned_cols=158  Identities=16%  Similarity=0.109  Sum_probs=88.5

Q ss_pred             eeEEEEcCC--------------CCCHHHHHHHHHHHHHHHHcCCcEEEEcCC-C--CceEEEecC-C-CCc--cCCCC-
Q psy2949          28 TVYYNFEDS--------------EFTIYEKTLVENAIQDLRMHTCVRFVPRTN-Q--DTYLRFRNT-G-FGC--ASPVG-   85 (367)
Q Consensus        28 ~VpY~~~~~--------------~~~~~~~~~I~~A~~~w~~~tci~F~~~~~-~--~~~I~i~~~-~-~gc--~S~vG-   85 (367)
                      +|.|.|...              .|++.+++.|+.||+.|+..++|+|+|+.. +  ..-|+|... . .+.  +++.. 
T Consensus        55 ~itysF~~~~~~~~~~~~~~~~~~~~~~q~~~vr~A~~~ws~va~i~F~ev~~~~~~~~~i~f~~~~~~~~~~~~a~~~~  134 (242)
T d1g9ka2          55 NLTYTFLTAPPVGYASRGLGTFSQFSALQKEQAKLSLESWADVAKVTFTEGPAARGDDGHMTFANFSASNGGAAFAYLPN  134 (242)
T ss_dssp             EEEEEECSSCCTTGGGGCCCSEECCCHHHHHHHHHHHHHHHTTBSEEEEESCCCC-CCEEEEEEEECCGGGCSEEECCTT
T ss_pred             EEEEEecCCCCcccCccccCCccccCHHHHHHHHHHHHHHHhhcCCEEEEccCCCCceEEEEEEeccCCCCcEEEEeccC
Confidence            799999432              246889999999999999999999999872 2  234555322 1 111  11111 


Q ss_pred             C-CCCCcccc-------cccCCCcccccchhHHHHHhhhcccccccCCCCCcceEEeeCCcCCCCCcccccCCCCccccc
Q psy2949          86 Y-FPIGTGID-------IFLGGRVCFLKGKIQHEILHSLGFWHEHTRPDRDQFVRVLRENIGPGHEFNLERRPTGSVRTF  157 (367)
Q Consensus        86 ~-~~g~q~i~-------~~~l~~~c~~~g~i~HEigHALG~~HEh~rpDRD~yv~I~~~ni~~~~~~nf~k~~~~~~~~~  157 (367)
                      . ..+...+.       ......+.....|++|||||||||.|.|..+..+..             ..+..      ..+
T Consensus       135 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t~~HEIGHaLGL~H~~~~~~~~~~-------------~~~~~------~~~  195 (242)
T d1g9ka2         135 SSRKGESWYLINKDYQVNKTPGEGNYGRQTLTHEIGHTLGLSHPGDYNAGNGN-------------PTYRD------AVY  195 (242)
T ss_dssp             STTTTEEEEECBTTBCTTTSCCTTSHHHHHHHHHHHHHHTCCCSSCCC------------------CCGGG------CSS
T ss_pred             CCcCcccccccccccccccccccchhHHHHHHHHhhhhhccccCCCCccccCC-------------ccccc------ccc
Confidence            1 11111111       111122344457999999999999999987653310             00000      001


Q ss_pred             CCcCCCCCCcCcccceeccCCCcceeeeCCCCCCCccCccccccHHHHHHHHHHhc
Q psy2949         158 GMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYK  213 (367)
Q Consensus       158 g~~YD~~SIMhY~~~~fs~~~~~~ti~~~~~~~~~~IG~r~~lS~~D~~~in~lY~  213 (367)
                      .......|||.|....-.       ..+....  ..-+....+...|+..|..||+
T Consensus       196 ~~d~~~~SVMsY~~~~~~-------~~~~~~~--~~~~~~~tp~~~DIaAlQ~lYG  242 (242)
T d1g9ka2         196 AEDTRAYSVMSYWSEKNT-------GQVFTKT--GEGAYASAPLLDDIAAVQKLYG  242 (242)
T ss_dssp             TTCSTTTCTTCSSCGGGG-------TCCCCCT--TCCCCCSSCCHHHHHHHHHHHC
T ss_pred             cccCCCceeecCCCccCC-------ccccccc--ccccccCCCCHHHHHHHHHhcC
Confidence            112234599999765321       1111111  1123345688899999999994

>d1k7ia2 d.92.1.6 (A:18-258) Metalloprotease {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Serralysin-like metalloprotease, catalytic (N-terminal) domain
domain: Metalloprotease
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.46  E-value=4.6e-13  Score=121.66  Aligned_cols=98  Identities=17%  Similarity=0.156  Sum_probs=62.4

Q ss_pred             eeEEEEcCCC-------------CCHHHHHHHHHHHHHHHHcCCcEEEEcC-CCCceEEEec--CCCCccCCCCC-----
Q psy2949          28 TVYYNFEDSE-------------FTIYEKTLVENAIQDLRMHTCVRFVPRT-NQDTYLRFRN--TGFGCASPVGY-----   86 (367)
Q Consensus        28 ~VpY~~~~~~-------------~~~~~~~~I~~A~~~w~~~tci~F~~~~-~~~~~I~i~~--~~~gc~S~vG~-----   86 (367)
                      +|.|.| ...             |++.+|++|++||+.|+..++|+|+|++ .....|+|..  ...+.....|.     
T Consensus        58 ~ltYsF-~~~~~~~~~~~~~~~~~s~~q~~~~r~A~~~Ws~vani~F~ev~~~~~adi~~~~~~~~~~~~~~~~~~a~a~  136 (241)
T d1k7ia2          58 NLTFKF-LQSVSSIPSGDTGFVKFNAEQIEQAKLSLQSWSDVANLTFTEVTGNKSANITFGNYTRDASGNLDYGTQAYAY  136 (241)
T ss_dssp             EEEEEE-CSCCSCCTTSCBCCBCCCHHHHHHHHHHHHHHHTTBSEEEEECCTTCCCSEEEEEECBCTTSCBCCSCCEEEC
T ss_pred             EEEEEc-cCCCCccccCCcccccccHHHHHHHHHHHHHHHhhcCCEEEEecCCCcccEEEEeeecCCCCcCCCCcceeee
Confidence            699999 322             4789999999999999999999999988 3445566632  22222221111     


Q ss_pred             ------CCCCccccc-----ccCCCcccccchhHHHHHhhhcccccccCCC
Q psy2949          87 ------FPIGTGIDI-----FLGGRVCFLKGKIQHEILHSLGFWHEHTRPD  126 (367)
Q Consensus        87 ------~~g~q~i~~-----~~l~~~c~~~g~i~HEigHALG~~HEh~rpD  126 (367)
                            ..+...++.     .....+-....+++|||||||||.|+|..+.
T Consensus       137 ~p~~~~~~g~~~~~~~~~~~~~~~~g~~~~~t~~HEIGHaLGL~H~~d~~~  187 (241)
T d1k7ia2         137 YPGNYQGAGSSWYNYNQSNIRNPGSEEYGRQTFTHEIGHALGLAHPGEYNA  187 (241)
T ss_dssp             CSSSSTTTTEEEEETTSHHHHCTTTSHHHHHHHHHHHHHHHTCCCSSSCCS
T ss_pred             cCCCcccccceeeccccccccCCccchhHHHHHHHHHHHHhcCCCCCcCcc
Confidence                  011111210     0011122223699999999999999998664

>d1sata2 d.92.1.6 (A:4-246) Metalloprotease {Serratia marcescens [TaxId: 615]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Serralysin-like metalloprotease, catalytic (N-terminal) domain
domain: Metalloprotease
species: Serratia marcescens [TaxId: 615]

Probab=99.41  E-value=1.2e-12  Score=118.99  Aligned_cols=107  Identities=18%  Similarity=0.201  Sum_probs=65.3

Q ss_pred             cCCCCcCC-------CeeEEEEcCC--------------CCCHHHHHHHHHHHHHHHHcCCcEEEEcC-CCCceEEEecC
Q psy2949          19 YQAQLWPD-------KTVYYNFEDS--------------EFTIYEKTLVENAIQDLRMHTCVRFVPRT-NQDTYLRFRNT   76 (367)
Q Consensus        19 ~~~~~Wp~-------~~VpY~~~~~--------------~~~~~~~~~I~~A~~~w~~~tci~F~~~~-~~~~~I~i~~~   76 (367)
                      +....|.+       .+|.|.|...              .|++.+++.|++||+.|++.+.|+|+|+. ....-|+|...
T Consensus        38 r~~~~W~~~~~~g~~~~lTYsF~~~~~~~~~~~~~~~~~~fs~~q~~~~r~a~~~Ws~vani~F~ev~~~~~adi~~~~~  117 (243)
T d1sata2          38 RENQTWNGYKVFGQPVKLTFSFPDYKFSSTNVAGDTGLSKFSAEQQQQAKLSLQSWADVANITFTEVAAGQKANITFGNY  117 (243)
T ss_dssp             TTCCCTTCTTCCSCCEEEEEECCCCCTTCCCTTSCBSCBCCCHHHHHHHHHHHHHHHHHBSEEEEECCTTSCCSEEEEEE
T ss_pred             CCCCccCCCCCCCceeEEEEEecCCCcccccccCCcccccCCHHHHHHHHHHHHHHHhhcCcEEEEecCCCceEEEEEec
Confidence            45567853       2699999321              13588999999999999999999999987 44456666321


Q ss_pred             ---CCC-------ccCCCCCC-------CCCccccc-----ccCCCcccccchhHHHHHhhhcccccccCC
Q psy2949          77 ---GFG-------CASPVGYF-------PIGTGIDI-----FLGGRVCFLKGKIQHEILHSLGFWHEHTRP  125 (367)
Q Consensus        77 ---~~g-------c~S~vG~~-------~g~q~i~~-----~~l~~~c~~~g~i~HEigHALG~~HEh~rp  125 (367)
                         ..+       .+++....       .+...++.     .....+-....+++|||||||||.|+|.-+
T Consensus       118 ~~~~~~~~~~~~~a~a~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~t~lHEIGHaLGL~Hp~d~~  188 (243)
T d1sata2         118 SQDRPGHYDYGTQAYAFLPNTIWQGQDLGGQTWYNVNQSNVKHPATEDYGRQTFTHEIGHALGLSHPGDYN  188 (243)
T ss_dssp             CEEETTEECCSCCEEECCTTCEETTEECTTEEEEETTSHHHHCTTTCHHHHHHHHHHHHHHHTCCCSSCCC
T ss_pred             cCCCCCCCCCCcceeeecCCCcccCcccccccccccccccccCCcccchHHHHHHHHHHHHhcCCCCCCCC
Confidence               111       11122111       01111110     001112223469999999999999999644

>d1c7ka_ d.92.1.1 (A:) Zinc protease {Streptomyces caespitosus [TaxId: 53502]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Zinc protease
domain: Zinc protease
species: Streptomyces caespitosus [TaxId: 53502]

Probab=97.44  E-value=3.3e-05  Score=60.68  Aligned_cols=78  Identities=18%  Similarity=0.026  Sum_probs=44.6

Q ss_pred             CHHHHHHHHHHHHHHHH-cCCcEEEEcCCCC-ceEEEecCCCCccCCCCCCCCCccccccc-CCCcccccchhHHHHHhh
Q psy2949          39 TIYEKTLVENAIQDLRM-HTCVRFVPRTNQD-TYLRFRNTGFGCASPVGYFPIGTGIDIFL-GGRVCFLKGKIQHEILHS  115 (367)
Q Consensus        39 ~~~~~~~I~~A~~~w~~-~tci~F~~~~~~~-~~I~i~~~~~gc~S~vG~~~g~q~i~~~~-l~~~c~~~g~i~HEigHA  115 (367)
                      -+..+..|..+.+.|+. .++|++++..... .++.+. ...|....+.-. |.-.|-... -..+-....+++|||||.
T Consensus        11 A~~f~s~ia~~a~iWNssV~NV~L~~~s~~~~~~~~~~-~~~g~~a~~~g~-G~g~i~lg~q~~qgy~~~RIaaHE~GH~   88 (132)
T d1c7ka_          11 APSFQQEIANAAQIWNSSVRNVQLRAGGNADFSYYEGN-DSRGSYAQTDGH-GRGYIFLDYQQNQQYDSTRVTAHETGHV   88 (132)
T ss_dssp             CGGGHHHHHHHHHHHHHHCSSEEEEECSSCSEEEEEEC-CTTCCEEEECSS-SCEEEEEEHHHHHHSCHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHhhcCCCceEeeecCCCCeEEEEec-CCCCCcCccCCC-CcEEEEechHHhcCCCchheeeehhccc
Confidence            46788999999999977 7899999976322 222222 223322221111 111111000 012333458999999999


Q ss_pred             hcc
Q psy2949         116 LGF  118 (367)
Q Consensus       116 LG~  118 (367)
                      |||
T Consensus        89 LGL   91 (132)
T d1c7ka_          89 LGL   91 (132)
T ss_dssp             HTC
T ss_pred             cCC
Confidence            998

>d2qqma3 b.23.1.1 (A:156-263) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.001  Score=50.43  Aligned_cols=29  Identities=21%  Similarity=0.246  Sum_probs=25.9

Q ss_pred             cCCCCCCCCCCCCCCCCcEEEEcccCCCccccc
Q psy2949         309 STSGPIPDLGYLPTGSGWFYKIGGPSDDRKIMD  341 (367)
Q Consensus       309 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~r~~~~  341 (367)
                      ||++|.+    +|++.+|.|.|.+|.+.||.+-
T Consensus         5 SP~yP~~----Y~~~~~C~w~I~~p~~~~I~l~   33 (108)
T d2qqma3           5 SPGFPEK----YPNSLECTYIVFAPKMSEIILE   33 (108)
T ss_dssp             CTTTTSC----CCSSCEEEEEEECGGGCCEEEE
T ss_pred             CCCCCCC----CCCCCeEEEEEEeCCCceeeeE
Confidence            8888876    8999999999999999998764

>d1szba1 b.23.1.1 (A:3-123) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.002  Score=49.92  Aligned_cols=34  Identities=15%  Similarity=0.114  Sum_probs=29.4

Q ss_pred             ccccc-cCCCCCCCCCCCCCCCCcEEEEcccCCCccccc
Q psy2949         304 IQGFY-STSGPIPDLGYLPTGSGWFYKIGGPSDDRKIMD  341 (367)
Q Consensus       304 ~~g~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~r~~~~  341 (367)
                      ..|.+ +|++|.+    +|.+.+|.|.|.+|.+.||.+-
T Consensus         9 ~~G~i~SP~yP~~----Yp~~~~C~W~I~~p~g~~I~l~   43 (121)
T d1szba1           9 VFGRLASPGFPGE----YANDQERRWTLTAPPGYRLRLY   43 (121)
T ss_dssp             CEEEEECTTTTSC----CCSSCEEEEEEECCTTEEEEEE
T ss_pred             CCeEEeCCCCCCC----CCCCCeEEEEEEeCCCceeEEE
Confidence            45766 9999876    9999999999999999998773

>d1nzia1 b.23.1.1 (A:1-117) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.002  Score=49.58  Aligned_cols=33  Identities=18%  Similarity=0.103  Sum_probs=28.7

Q ss_pred             cccc-cCCCCCCCCCCCCCCCCcEEEEcccCCCccccc
Q psy2949         305 QGFY-STSGPIPDLGYLPTGSGWFYKIGGPSDDRKIMD  341 (367)
Q Consensus       305 ~g~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~r~~~~  341 (367)
                      .|.+ ||++|.+    +|++.+|.|.|.+|.++||.+-
T Consensus         5 ~G~i~SP~yP~~----Yp~~~~C~w~I~~p~g~~I~l~   38 (117)
T d1nzia1           5 YGEILSPNYPQA----YPSEVEKSWDIEVPEGYGIHLY   38 (117)
T ss_dssp             EEEEECTTTTSC----CCSSEEEEEEEECCTTEEEEEE
T ss_pred             EEEEeCCCCCCC----CCCCCcEEEEEEcCCCCcEEEE
Confidence            4665 8999876    9999999999999999998874

>d1nt0a2 b.23.1.1 (A:165-278) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.21  E-value=0.0042  Score=47.59  Aligned_cols=35  Identities=29%  Similarity=0.316  Sum_probs=29.7

Q ss_pred             cccccc-cCCCCCCCCCCCCCCCCcEEEEcccCCCccccc
Q psy2949         303 DIQGFY-STSGPIPDLGYLPTGSGWFYKIGGPSDDRKIMD  341 (367)
Q Consensus       303 ~~~g~~-~~~~~~~~~~~~~~~~~c~~~~~~~~~~r~~~~  341 (367)
                      ...|.+ +|++|.+    +|.+.+|.|.|.+|.+.||.+-
T Consensus         8 ~~~G~i~SP~yP~~----Y~~~~~C~w~I~~p~g~~i~l~   43 (114)
T d1nt0a2           8 GRSGFLSSPEYPQP----YPKLSSCAYNIRLEEGFSITLD   43 (114)
T ss_dssp             SSSEEEECTTTTSC----CCSSCEEEEEEECCSSCEEEEE
T ss_pred             CCCEEEECCCCCCC----CCCCCeEEEEEEeCCCCceeeE
Confidence            345766 8999876    8899999999999999998874

>d1bswa_ d.92.1.9 (A:) Snake venom metalloprotease {Five-pace snake (Agkistrodon acutus), acutolysin A [TaxId: 36307]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Reprolysin-like
domain: Snake venom metalloprotease
species: Five-pace snake (Agkistrodon acutus), acutolysin A [TaxId: 36307]

Probab=93.65  E-value=0.0096  Score=50.00  Aligned_cols=16  Identities=38%  Similarity=0.669  Sum_probs=14.3

Q ss_pred             chhHHHHHhhhccccc
Q psy2949         106 GKIQHEILHSLGFWHE  121 (367)
Q Consensus       106 g~i~HEigHALG~~HE  121 (367)
                      -+++|||||.||+.|.
T Consensus       135 ~~~AHElGH~lG~~HD  150 (197)
T d1bswa_         135 ITLAHEMAHNLGVSHD  150 (197)
T ss_dssp             HHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHhhcCCccC
Confidence            4688999999999995

>d1quaa_ d.92.1.9 (A:) Snake venom metalloprotease {Chinese five-pace snake (Agkistrodon acutus), acutolysin C [TaxId: 36307]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Reprolysin-like
domain: Snake venom metalloprotease
species: Chinese five-pace snake (Agkistrodon acutus), acutolysin C [TaxId: 36307]

Probab=93.29  E-value=0.012  Score=49.50  Aligned_cols=16  Identities=38%  Similarity=0.653  Sum_probs=14.6

Q ss_pred             chhHHHHHhhhccccc
Q psy2949         106 GKIQHEILHSLGFWHE  121 (367)
Q Consensus       106 g~i~HEigHALG~~HE  121 (367)
                      .+++|||||.||+.|.
T Consensus       137 ~~~AHElGH~lG~~HD  152 (197)
T d1quaa_         137 VTMAHELGHNLGMNHD  152 (197)
T ss_dssp             HHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHhhcCCccC
Confidence            5789999999999994

>d2i47a1 d.92.1.10 (A:220-473) TNF-alpha converting enzyme, TACE, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: TNF-alpha converting enzyme, TACE, catalytic domain
domain: TNF-alpha converting enzyme, TACE, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.18  E-value=0.013  Score=51.27  Aligned_cols=19  Identities=26%  Similarity=0.296  Sum_probs=16.5

Q ss_pred             chhHHHHHhhhcccccccC
Q psy2949         106 GKIQHEILHSLGFWHEHTR  124 (367)
Q Consensus       106 g~i~HEigHALG~~HEh~r  124 (367)
                      .+++|||||.||+.|....
T Consensus       182 ~~~AHElGH~lG~~HD~~~  200 (254)
T d2i47a1         182 LVTTHELGHNFGAEHDPDG  200 (254)
T ss_dssp             HHHHHHHHHHTTCCCCCCS
T ss_pred             HHHHHHHHhhcCCCCCCCC
Confidence            4799999999999999643

>d1atla_ d.92.1.9 (A:) Snake venom metalloprotease {Western diamonback rattlesnake (Crotalus atrox), atrolysin C [TaxId: 8730]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Reprolysin-like
domain: Snake venom metalloprotease
species: Western diamonback rattlesnake (Crotalus atrox), atrolysin C [TaxId: 8730]

Probab=93.12  E-value=0.013  Score=49.33  Aligned_cols=17  Identities=35%  Similarity=0.573  Sum_probs=15.1

Q ss_pred             chhHHHHHhhhcccccc
Q psy2949         106 GKIQHEILHSLGFWHEH  122 (367)
Q Consensus       106 g~i~HEigHALG~~HEh  122 (367)
                      .+++|||||.||+.|..
T Consensus       136 ~~~AHElGH~lG~~HD~  152 (200)
T d1atla_         136 VTMAHELGHNLGMEHDG  152 (200)
T ss_dssp             HHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHhhcCCccCC
Confidence            57899999999999953

>d1kufa_ d.92.1.9 (A:) Snake venom metalloprotease {Taiwan habu (Trimeresurus mucrosquamatus), atrolysin E [TaxId: 103944]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Reprolysin-like
domain: Snake venom metalloprotease
species: Taiwan habu (Trimeresurus mucrosquamatus), atrolysin E [TaxId: 103944]

Probab=93.03  E-value=0.014  Score=49.30  Aligned_cols=16  Identities=38%  Similarity=0.642  Sum_probs=14.5

Q ss_pred             chhHHHHHhhhccccc
Q psy2949         106 GKIQHEILHSLGFWHE  121 (367)
Q Consensus       106 g~i~HEigHALG~~HE  121 (367)
                      .+++|||||.||+.|.
T Consensus       138 ~~~AHElGH~lG~~HD  153 (201)
T d1kufa_         138 VTMTHELGHNLGMEHD  153 (201)
T ss_dssp             HHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHhcCCCCC
Confidence            5789999999999995

>d1r55a_ d.92.1.9 (A:) ADAM33 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Reprolysin-like
domain: ADAM33
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.03  E-value=0.014  Score=49.33  Aligned_cols=17  Identities=47%  Similarity=0.729  Sum_probs=15.1

Q ss_pred             chhHHHHHhhhcccccc
Q psy2949         106 GKIQHEILHSLGFWHEH  122 (367)
Q Consensus       106 g~i~HEigHALG~~HEh  122 (367)
                      .+++|||||.||+.|..
T Consensus       134 ~v~AHElGH~lG~~HD~  150 (203)
T d1r55a_         134 ATMAHEIGHSLGLSHDP  150 (203)
T ss_dssp             HHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHhcCCccCC
Confidence            58899999999999964

>d1nd1a_ d.92.1.9 (A:) Snake venom metalloprotease {Terciopelo (Bothrops asper), bap1 [TaxId: 8722]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Reprolysin-like
domain: Snake venom metalloprotease
species: Terciopelo (Bothrops asper), bap1 [TaxId: 8722]

Probab=92.86  E-value=0.015  Score=49.07  Aligned_cols=16  Identities=38%  Similarity=0.607  Sum_probs=14.5

Q ss_pred             chhHHHHHhhhccccc
Q psy2949         106 GKIQHEILHSLGFWHE  121 (367)
Q Consensus       106 g~i~HEigHALG~~HE  121 (367)
                      -+++|||||.||+.|.
T Consensus       138 ~~~AHElGH~lG~~HD  153 (202)
T d1nd1a_         138 VTMAHELGHNLGIDHD  153 (202)
T ss_dssp             HHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHhhcCCccC
Confidence            4789999999999995

>d1bqqm_ d.92.1.11 (M:) Membrane-type matrix metalloproteinase (CDMT1-MMP) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Matrix metalloproteases, catalytic domain
domain: Membrane-type matrix metalloproteinase (CDMT1-MMP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.39  E-value=0.049  Score=43.56  Aligned_cols=40  Identities=15%  Similarity=0.063  Sum_probs=27.9

Q ss_pred             ccccCCCCCCcccccccccccCCCceeeeeCCCCCccccccccCCCHHHHHHHhhhccC
Q psy2949         236 TFSMPYDYGSIMHYSGIAFSKDGVSKTIVPLYPGAEDTMGQRDAMSRVDLAKLNRLYKC  294 (367)
Q Consensus       236 ~~~~pYDy~SiMhY~~~~fs~~~~~~ti~~~~~~~~~~~gqr~~~s~~D~~~in~~Y~C  294 (367)
                      -+++|+|..|||||.-. +.                  -+.+..|+..||+.|+.||.-
T Consensus       133 GL~H~~d~~SvM~p~~~-~~------------------~~~~~~L~~~Di~~i~~LYG~  172 (174)
T d1bqqm_         133 GLEHSSDPSAIMAPFYQ-WM------------------DTENFVLPDDDRRGIQQLYGG  172 (174)
T ss_dssp             TCCCCSCTTCSSSSBCC-CC------------------CSTTCCCCHHHHTTHHHHTTT
T ss_pred             CCCCCCCCCCccCCccc-CC------------------CCCCCCCCHHHHHHHHHHhCc
Confidence            45678999999987311 10                  011235899999999999953

>d1sfpa_ b.23.1.1 (A:) Acidic seminal fluid protein (ASFP) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Acidic seminal fluid protein (ASFP)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.25  E-value=0.037  Score=41.81  Aligned_cols=22  Identities=9%  Similarity=0.132  Sum_probs=17.7

Q ss_pred             CCCCCCcEEEEcccCCCccccc
Q psy2949         320 LPTGSGWFYKIGGPSDDRKIMD  341 (367)
Q Consensus       320 ~~~~~~c~~~~~~~~~~r~~~~  341 (367)
                      ++.+.+|.|.|.+|.+.||.+-
T Consensus        22 y~~~~~C~w~I~~p~g~~I~l~   43 (111)
T d1sfpa_          22 YGPKTNCVWTIQMPPEYHVRVS   43 (111)
T ss_dssp             CSSCSEEEEEEECCTTCEEEEE
T ss_pred             CCCCCcEEEEEEcCCCceeeEE
Confidence            3345889999999999997664

>d1sppa_ b.23.1.1 (A:) Major seminal plasma glycoprotein PSP-I {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Major seminal plasma glycoprotein PSP-I
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.23  E-value=0.055  Score=40.71  Aligned_cols=18  Identities=0%  Similarity=0.102  Sum_probs=16.2

Q ss_pred             CCcEEEEcccCCCccccc
Q psy2949         324 SGWFYKIGGPSDDRKIMD  341 (367)
Q Consensus       324 ~~c~~~~~~~~~~r~~~~  341 (367)
                      .+|.|.|.+|.+.||.+-
T Consensus        25 ~~C~W~I~~p~g~~I~l~   42 (109)
T d1sppa_          25 TECVWTLQVDPKYKLLVS   42 (109)
T ss_dssp             SEEEEEEECCTTSEEEEE
T ss_pred             CcEEEEEEEccCceeEEE
Confidence            579999999999999875

>d1sppb_ b.23.1.1 (B:) Major seminal plasma glycoprotein PSP-II {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: CUB-like
superfamily: Spermadhesin, CUB domain
family: Spermadhesin, CUB domain
domain: Major seminal plasma glycoprotein PSP-II
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.18  E-value=0.13  Score=38.88  Aligned_cols=18  Identities=17%  Similarity=0.032  Sum_probs=15.6

Q ss_pred             CCcEEEEcccCCCccccc
Q psy2949         324 SGWFYKIGGPSDDRKIMD  341 (367)
Q Consensus       324 ~~c~~~~~~~~~~r~~~~  341 (367)
                      ..|.|.|.+|.+.||.|-
T Consensus        28 ~~C~W~I~~p~~~~I~l~   45 (112)
T d1sppb_          28 NLCTWTILMKPDQKVRMA   45 (112)
T ss_dssp             SEEEEEEECCTTCEEEEE
T ss_pred             CceEEEEecCCcEEEEEE
Confidence            359999999999999874

>d1lmla_ d.92.1.3 (A:) Leishmanolysin {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: Zincin-like
superfamily: Metalloproteases ("zincins"), catalytic domain
family: Leishmanolysin
domain: Leishmanolysin
species: Leishmania major [TaxId: 5664]

Probab=83.40  E-value=0.16  Score=48.44  Aligned_cols=17  Identities=35%  Similarity=0.602  Sum_probs=14.5

Q ss_pred             chhHHHHHhhhcccccc
Q psy2949         106 GKIQHEILHSLGFWHEH  122 (367)
Q Consensus       106 g~i~HEigHALG~~HEh  122 (367)
                      .+++|||+|||||....
T Consensus       161 ~~~~HEi~H~LGfs~~~  177 (475)
T d1lmla_         161 RVVTHEMAHALGFSGPF  177 (475)
T ss_dssp             HHHHHHHHHHTTCSHHH
T ss_pred             HHHHHHHHHHhccChhh
Confidence            78999999999996543