Psyllid ID: psy2960

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-----
Protein Sequence
MKQVKGLFMNVFKTYQAGSLRFISSKKLVFHEFGEPAKVVNVVEEELLKVMSTELCTYISLLDTSARGFSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHccccEEEEcccccHHHHccccccHHHHHHHHHHHHHHHccHHHHHHcccccccccccEEEEEEcccccccccEEEEEEccccccccEEEEEEEEEccccHHHHHHccccccccccccccccEEEEEEEEEcccccccccccEEEEccccccccccEEEcccccEEEccccccHHHHHcccccHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHccccEEEcHHHHHHHHHHcccccccEEEEccccHHHHHHHHccccccEEEEEEcccccccccccccHHccccEEEEEEccccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccEEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHcccccccccccEHHHcccccccEEEEEcEEccccccccccHHHHHHHHHHHccHHEEEEEEEcccccHHEEEEEccccccccccEEEEEEEEEEEcHHHHHHHHccccccccccccccccEEEEEEEEcccccccccccEEEEccccccccEcEEEEEHHHEEEEcccccHHHHHHccHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHHccEEEEEEccHHHHHHHHHHHHHHccccEEcHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHccccccEEEEccccccccEEEcHHHHHHHccEEEEccHHHHHcccHHHHHHHHHHHHHHHHHHccccEcEEcccccHHHHHHHHHHHHHcccEEEEEEEEEccc
Coil and Loop (DISEMBL)
MKQVKGLFMNVFKTYQAGSLRFISSKKlvfhefgepakvVNVVEEELLKVMSTELCTYISLLDTSARGFSYLANKLvynqhgtplRVVTVENETLNSVQKHEVVVKMLVapvnpadintiqgvypikptlpavpgfegvGEVVEvgsdvsslavgdhvipdtqhlgtwrnygkfnhdvlMKVPKDIalteisgitsnpctayrmlkdynslspgdvviqngansacgQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSlgadyvftEEELRNisrdasipkpklalncvggnsaTNLLRTLVSKGVMvtyggmsrepvqiptsafifkdiTLRGHWMTRWQKENKESAERKSMMNELTEMMRTgklaapahkFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ
Flexible Loop (DISEMBL)
MKQVKGLFMNVFKTYQAGSLRFISSKKLVFHEFGEPAKVVNVVEEELLKVMSTELCTYISLLDTSARGFSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRnisrdasipkpkLALNCVGGNSATNLLRTLVSKGVMVTYGGmsrepvqiptsaFIFKDITLRGHWMtrwqkenkesaeRKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTmsiqgksgvKYYIDFRQ
Low Complexity Region (SEG)
MKQVKGLFMNVFKTYQAGSLRFISSKKLVFHEFGEPAkvvnvveeellkvMSTELCTYISLLDTSARGFSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFegvgevvevgsdvssLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ
Disordered region (IsUnstruct)
****KGLFMNVFKTYQAGSLRFISSKKLVFHEFGEPAKVVNVVEEELLKVMSTELCTYISLLDTSARGFSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRW**************************AAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYID***
Disordered Region (DISOPRED)
****KGLFMNVFKTYQAGSLRFISSKKLVFHEFGEPAKVVNVVEEE*************************LANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ
Disordered Region (DISEMBL)
MKQVKGLFMNVFKTYQAGSLRFISSKKLVFHEFGEPAKVVNVVEEELLKVMSTELCTYISLLDTSARGFSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQK*********SMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ
Disordered Region (DISPRO)
**QVKGLFMNVFKTYQAGSLRFISSKKLVFHEFGEPAKVVNVVEEELLKVMSTELCTYISLLDTSARGFSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooohhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKQVKGLFMNVFKTYQAGSLRFISSKKLVFHEFGEPAKVVNVVEEELLKVMSTELCTYISLLDTSARGFSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	405	2.2.26 [Sep-21-2011]
Q9V6U9	357	Probable trans-2-enoyl-Co	yes	N/A	0.832	0.943	0.501	2e-93
Q9Z311	373	Trans-2-enoyl-CoA reducta	yes	N/A	0.767	0.833	0.529	1e-90
Q9DCS3	373	Trans-2-enoyl-CoA reducta	yes	N/A	0.767	0.833	0.523	1e-88
Q9BV79	373	Trans-2-enoyl-CoA reducta	yes	N/A	0.767	0.833	0.517	5e-88
Q6GQN8	377	Trans-2-enoyl-CoA reducta	yes	N/A	0.775	0.832	0.496	4e-85
Q7YS70	373	Trans-2-enoyl-CoA reducta	yes	N/A	0.762	0.828	0.495	3e-81
Q28GQ2	350	Trans-2-enoyl-CoA reducta	yes	N/A	0.8	0.925	0.478	8e-80
O45903	344	Probable trans-2-enoyl-Co	yes	N/A	0.720	0.848	0.494	2e-77
Q8LCU7	375	Probable trans-2-enoyl-Co	yes	N/A	0.790	0.853	0.436	2e-72
Q54YT4	350	Trans-2-enoyl-CoA reducta	yes	N/A	0.785	0.908	0.425	1e-68

>sp|Q9V6U9|MECR_DROME Probable trans-2-enoyl-CoA reductase, mitochondrial OS=Drosophila melanogaster GN=CG16935 PE=3 SV=2

 Score =  343 bits (879), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 170/339 (50%), Positives = 215/339 (63%), Gaps = 2/339 (0%)

Query: 66  ARGFSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYP 125
           +R  S +A  L Y QHG P  V+ +  + L   + ++V+VK+L AP+NPADINTIQG YP
Sbjct: 16  SRQMSVVAKSLKYTQHGEPQEVLQLVEDKLPDPKDNQVLVKILAAPINPADINTIQGKYP 75

Query: 126 IKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKD 185
           +KP  PAV G E V EV+ VG  V     G HVIP    LGTW  +  +  D L+ V K 
Sbjct: 76  VKPKFPAVGGNECVAEVICVGDKVKGFEAGQHVIPLASGLGTWTTHAVYKEDQLLIVSKK 135

Query: 186 IALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIV 245
           + L E +  T NP TAYRMLKD+  L PGD VIQNGANSA GQ V Q+ R WG+ ++ IV
Sbjct: 136 VGLAEAATSTVNPTTAYRMLKDFVQLCPGDTVIQNGANSAVGQAVHQLCRAWGINSVGIV 195

Query: 246 RNRDDIDKLKSYLKSLGADYVFTEEELR--NISRDASIPKPKLALNCVGGNSATNLLRTL 303
           R+R +I +LK  L+ LGA  V TE E+R  +I +   + KP+LA NCVGG SAT + R L
Sbjct: 196 RDRPEIAELKQMLQCLGATEVLTEAEIRTSDIFKSGKLKKPRLAFNCVGGKSATEVSRHL 255

Query: 304 VSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMM 363
            + GV+VTYGGMSREPV + T   IFKDI  RG WMTRW KEN  S ER  M  E+ E+M
Sbjct: 256 DNGGVLVTYGGMSREPVTVATGPLIFKDIAFRGFWMTRWSKENYSSPERSKMFKEIFELM 315

Query: 364 RTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYID 402
             GK  AP H+ V L  F++A    +S +G +G KY +D
Sbjct: 316 EQGKFVAPNHEMVPLAKFKDAAAAALSFKGFTGKKYILD 354

Catalyzes the reduction of trans-2-enoyl-CoA to acyl-CoA. May have a role in the mitochondrial synthesis of fatty acids.
Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: 3EC: 8

>sp|Q9Z311|MECR_RAT Trans-2-enoyl-CoA reductase, mitochondrial OS=Rattus norvegicus GN=Mecr PE=2 SV=1

 Score =  333 bits (855), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 169/319 (52%), Positives = 214/319 (67%), Gaps = 8/319 (2%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
           LVY  HG P +V+ ++N  L +V+  +V VKML AP+NP+DIN IQG Y + P LPAV G
Sbjct: 46  LVYGNHGDPAKVIQLKNLELTAVEGSDVHVKMLAAPINPSDINMIQGNYGLLPKLPAVGG 105

Query: 136 FEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGIT 195
            EGVG+V+ VGS VS L  GD VIP    LGTWR    F+ + L+ VPKDI L   + + 
Sbjct: 106 NEGVGQVIAVGSSVSGLKPGDWVIPANAGLGTWRTEAVFSEEALIGVPKDIPLQSAATLG 165

Query: 196 SNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK 255
            NPCTAYRML D+  L PGD VIQN +NS  GQ VIQIA   GLKTIN++R+R DI KL 
Sbjct: 166 VNPCTAYRMLVDFEQLQPGDSVIQNASNSGVGQAVIQIASALGLKTINVIRDRPDIKKLT 225

Query: 256 SYLKSLGADYVFTEEELR-----NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMV 310
             LK LGADYV TEEELR     NI +D  +P P+LALNCVGG S+T LLR L   G MV
Sbjct: 226 DRLKDLGADYVLTEEELRMPETKNIFKD--LPLPRLALNCVGGKSSTELLRHLAPGGTMV 283

Query: 311 TYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA 370
           TYGGM+++PV    S  IFKD+ LRG W+++W+K N    E K ++  L  ++R G+L A
Sbjct: 284 TYGGMAKQPVTASVSMLIFKDLKLRGFWLSQWKK-NHSPDEFKELILILCNLIRQGQLTA 342

Query: 371 PAHKFVTLKNFQEALMNTM 389
           PA   + L+++Q+AL  +M
Sbjct: 343 PAWSGIPLQDYQQALEASM 361

Catalyzes the reduction of trans-2-enoyl-CoA to acyl-CoA with chain length from C6 to C16 in an NADPH-dependent manner with preference to medium chain length substrate. May have a role in the mitochondrial synthesis of fatty acids.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|Q9DCS3|MECR_MOUSE Trans-2-enoyl-CoA reductase, mitochondrial OS=Mus musculus GN=Mecr PE=2 SV=2

 Score =  327 bits (838), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 167/319 (52%), Positives = 212/319 (66%), Gaps = 8/319 (2%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
           LVY  HG P +VV ++N  L +V+  +V V+ML AP+NP+DIN IQG Y + P LPAV G
Sbjct: 46  LVYGNHGDPAKVVQLKNLELTAVEGSDVHVRMLAAPINPSDINMIQGNYGLLPKLPAVGG 105

Query: 136 FEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGIT 195
            EGVG+V+ VGS VS+L  GD VIP    LGTWR    F+ + L+ +PKDI L   + + 
Sbjct: 106 NEGVGQVIAVGSSVSALKPGDWVIPANAGLGTWRTEAVFSEEALIGIPKDIPLQSAATLG 165

Query: 196 SNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK 255
            NPCTAYRML D+  L PGD VIQN +NS  GQ VIQIA    LKTIN+VR+R DI KL 
Sbjct: 166 VNPCTAYRMLVDFEQLQPGDSVIQNASNSGVGQAVIQIASALRLKTINVVRDRPDIKKLT 225

Query: 256 SYLKSLGADYVFTEEELR-----NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMV 310
             LK LGADYV TEEELR      I +D  +P P+LALNCVGG S+T LLR L   G MV
Sbjct: 226 DRLKDLGADYVLTEEELRMPETKTIFKD--LPLPRLALNCVGGKSSTELLRHLAPGGTMV 283

Query: 311 TYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA 370
           TYGGM+++PV    S  IFKD+ LRG W+++W+K N    E K ++  L  ++R G+L A
Sbjct: 284 TYGGMAKQPVTASVSLLIFKDLKLRGFWLSQWKK-NHSPDEFKELILTLCNLIRQGRLTA 342

Query: 371 PAHKFVTLKNFQEALMNTM 389
           P+   V L+ +Q+AL  +M
Sbjct: 343 PSCSEVPLQGYQQALEASM 361

Catalyzes the reduction of trans-2-enoyl-CoA to acyl-CoA with chain length from C6 to C16 in an NADPH-dependent manner with preference to medium chain length substrate. May have a role in the mitochondrial synthesis of fatty acids.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|Q9BV79|MECR_HUMAN Trans-2-enoyl-CoA reductase, mitochondrial OS=Homo sapiens GN=MECR PE=1 SV=2

 Score =  325 bits (832), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 165/319 (51%), Positives = 215/319 (67%), Gaps = 8/319 (2%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
           LVY  HG P +VV ++N  L +V+  +V VKML AP+NP+DIN IQG Y   P LPAV G
Sbjct: 46  LVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGFLPELPAVGG 105

Query: 136 FEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGIT 195
            EGV +VV VGS+V+ L  GD VIP    LGTWR    F+ + L++VP DI L   + + 
Sbjct: 106 NEGVAQVVAVGSNVTGLKPGDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLG 165

Query: 196 SNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK 255
            NPCTAYRML D+  L PGD VIQN +NS  GQ VIQIA   GL+TIN+VR+R DI KL 
Sbjct: 166 VNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLS 225

Query: 256 SYLKSLGADYVFTEEELR-----NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMV 310
             LKSLGA++V TEEELR     N  +D  +P+P+LALNCVGG S+T LLR L   G MV
Sbjct: 226 DRLKSLGAEHVITEEELRRPEMKNFFKD--MPQPRLALNCVGGKSSTELLRQLARGGTMV 283

Query: 311 TYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA 370
           TYGGM+++PV    S  IFKD+ LRG W+++W+K++    + K ++  L +++R G+L A
Sbjct: 284 TYGGMAKQPVVASVSLLIFKDLKLRGFWLSQWKKDHSPD-QFKELILTLCDLIRRGQLTA 342

Query: 371 PAHKFVTLKNFQEALMNTM 389
           PA   V L+++Q AL  +M
Sbjct: 343 PACSQVPLQDYQSALEASM 361

Catalyzes the reduction of trans-2-enoyl-CoA to acyl-CoA with chain length from C6 to C16 in an NADPH-dependent manner with preference to medium chain length substrate. May have a role in the mitochondrial synthesis of fatty acids.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|Q6GQN8|MECR_DANRE Trans-2-enoyl-CoA reductase, mitochondrial OS=Danio rerio GN=mecr PE=2 SV=2

 Score =  315 bits (807), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 158/318 (49%), Positives = 210/318 (66%), Gaps = 4/318 (1%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
           L+Y  HG P +VV +E+  L  V    V+VKML AP+NP+D+N +QG Y I P LPAV G
Sbjct: 48  LLYRNHGEPSQVVQLESLDLPQVGAECVLVKMLAAPINPSDLNMLQGTYAILPELPAVGG 107

Query: 136 FEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGIT 195
            EGV +V+EVG  V +L VGD VIP    +GTWR       D L+ +PKDI +   + + 
Sbjct: 108 NEGVAQVMEVGDKVKTLKVGDWVIPKDAGIGTWRTAAVLKADDLVTLPKDIPVLSAATLG 167

Query: 196 SNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK 255
            NPCTAYRML D+  L  GD VIQN ANS  GQ VIQIA   G+ TIN++R+R D+ +L 
Sbjct: 168 VNPCTAYRMLTDFEELKAGDTVIQNAANSGVGQAVIQIAAAKGIHTINVIRDRPDLRQLS 227

Query: 256 SYLKSLGADYVFTEEELRNISRD---ASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTY 312
             L ++GA +V TEE LR         S P+PKLALN VGG SAT LLR L S G +VTY
Sbjct: 228 DRLTAMGATHVITEETLRRPEMKELFKSCPRPKLALNGVGGKSATELLRHLQSGGSLVTY 287

Query: 313 GGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAER-KSMMNELTEMMRTGKLAAP 371
           GGM+++PV +P SA IFKD+ +RG W+T+W+++N+   E  + M++EL  ++R GKL+AP
Sbjct: 288 GGMAKQPVTVPVSALIFKDVRVRGFWVTQWKRDNRHDDEALRHMLDELCILIRAGKLSAP 347

Query: 372 AHKFVTLKNFQEALMNTM 389
               V L++F++AL N M
Sbjct: 348 ICTQVQLQDFRKALENAM 365

Catalyzes the reduction of trans-2-enoyl-CoA to acyl-CoA. May have a role in the mitochondrial synthesis of fatty acids.

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|Q7YS70|MECR_BOVIN Trans-2-enoyl-CoA reductase, mitochondrial OS=Bos taurus GN=MECR PE=1 SV=1

 Score =  302 bits (773), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 155/313 (49%), Positives = 205/313 (65%), Gaps = 4/313 (1%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
           LVY  HG P +VV ++N  L +V    V VKML AP+NP+DIN IQG Y + P LPAV G
Sbjct: 46  LVYGHHGDPAKVVELKNLELAAVGGSHVHVKMLAAPINPSDINMIQGNYGLLPQLPAVGG 105

Query: 136 FEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGIT 195
            EGVG+VV VGS V+ +  GD VIP    LGTWR    F  + L+ VP DI L   + + 
Sbjct: 106 NEGVGQVVAVGSGVTGVKPGDWVIPANPGLGTWRTEAVFGEEELITVPSDIPLQSAATLG 165

Query: 196 SNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK 255
            NPCTAYRML D+  L P D +IQN +NS  GQ VIQIA   GL+TIN++R+  D+ KL 
Sbjct: 166 VNPCTAYRMLVDFERLRPRDSIIQNASNSGVGQAVIQIAAARGLRTINVLRDTPDLQKLT 225

Query: 256 SYLKSLGADYVFTEEELRNISRDA---SIPKPKLALNCVGGNSATNLLRTLVSKGVMVTY 312
             LK+LGA++V TEEELR     +    +P+P+LALNCVGG S+T LLR L   G MVTY
Sbjct: 226 DTLKNLGANHVVTEEELRKPEMKSFFKDVPQPRLALNCVGGKSSTELLRHLAPGGTMVTY 285

Query: 313 GGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPA 372
           GGM+++PV    S  IFKD+ LRG W+++W+K++    + K ++  L +++R G+L APA
Sbjct: 286 GGMAKQPVIASVSQLIFKDLKLRGFWLSQWKKDHSPD-QFKELILTLCDLIRRGQLTAPA 344

Query: 373 HKFVTLKNFQEAL 385
              V L+++  AL
Sbjct: 345 CSEVPLQDYLCAL 357

Catalyzes the reduction of trans-2-enoyl-CoA to acyl-CoA with chain length from C6 to C16 in an NADPH-dependent manner with preference to medium chain length substrate. May have a role in the mitochondrial synthesis of fatty acids.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|Q28GQ2|MECR_XENTR Trans-2-enoyl-CoA reductase, mitochondrial OS=Xenopus tropicalis GN=mecr PE=2 SV=1

 Score =  297 bits (761), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 158/330 (47%), Positives = 219/330 (66%), Gaps = 6/330 (1%)

Query: 67  RGFSYLANK-LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYP 125
           R FS LA + LVY +HG PL+V+ ++N  +     +EV VKML AP+NP+DIN +QG Y 
Sbjct: 10  RPFSSLAARGLVYEKHGEPLQVLRLKNVNITHPADNEVRVKMLAAPINPSDINMVQGTYA 69

Query: 126 IKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKD 185
           + P LPAV G EGVG VVE+G  VSS+  GD V+P    LGTW     F+ D L++VP D
Sbjct: 70  LLPQLPAVGGNEGVGVVVEIGRHVSSMRPGDWVVPVDAGLGTWCTEAVFSEDSLVRVPSD 129

Query: 186 IALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIV 245
           I +   + ++ NPCTAYR+L D+ +L PGD +IQN +NS  GQ VIQIA   G+ TIN+V
Sbjct: 130 IPVAGAATVSVNPCTAYRLLSDFETLRPGDTIIQNASNSGVGQAVIQIATSLGITTINVV 189

Query: 246 RNRDDIDKLKSYLKSLGADYVFTEEELRNIS-RD--ASIPKPKLALNCVGGNSATNLLRT 302
           R+R+D+  L   L+ LGAD+V TEE+LR    +D   + P+P+LALNCVGG S T +LR 
Sbjct: 190 RDREDLSSLIQRLRDLGADHVITEEQLRKPEMKDLFKNCPRPRLALNCVGGKSTTEMLRH 249

Query: 303 LVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERK--SMMNELT 360
           L   G MVTYGGMS++PV +P SA IFK++ L G W+T+W+KE  ++   +   M+ +L 
Sbjct: 250 LDYGGTMVTYGGMSKQPVTVPVSALIFKNVKLCGFWVTQWKKERAQTDREEIVKMIRDLC 309

Query: 361 EMMRTGKLAAPAHKFVTLKNFQEALMNTMS 390
           +++R GKL  P      L++F  AL ++ +
Sbjct: 310 DLIRRGKLVPPPSTQRPLEDFSRALQDSQT 339

Catalyzes the reduction of trans-2-enoyl-CoA to acyl-CoA. May have a role in the mitochondrial synthesis of fatty acids (By similarity). Functions in pronephros development, regulating late differentiation of all pronephric tubule segments.

Xenopus tropicalis (taxid: 8364)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|O45903|MECR1_CAEEL Probable trans-2-enoyl-CoA reductase 1, mitochondrial OS=Caenorhabditis elegans GN=W09H1.5 PE=3 SV=1

 Score =  290 bits (741), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 146/295 (49%), Positives = 192/295 (65%), Gaps = 3/295 (1%)

Query: 75  KLVYNQHGTPLRVVTVENETL-NSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAV 133
           +LVY  +  P   + ++  T+ +     +V+V+ + AP+NPAD+N IQGVYP+KP LPAV
Sbjct: 19  QLVYEGYRNPPEAIQLKTVTIADKPSADQVLVQWIAAPINPADLNQIQGVYPVKPALPAV 78

Query: 134 PGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISG 193
            G EG G+V+ VGS+VSS+ VGDHVIPD   LGTWR  G    + L  +   +++   + 
Sbjct: 79  GGNEGFGKVISVGSNVSSIKVGDHVIPDRSGLGTWRELGLHQENDLFPIDNTLSMEYAAT 138

Query: 194 ITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDK 253
              NP TAYRMLKD+  L  GD V QNGANSA G++VIQI R  G+KT+N+VR+RD++++
Sbjct: 139 FQVNPPTAYRMLKDFIDLKKGDTVAQNGANSAVGKHVIQICRILGIKTVNVVRSRDNLEE 198

Query: 254 LKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYG 313
           L   LK LGAD V T+EEL   SR    P  KLALNCVGG S+  L   L   G MVTYG
Sbjct: 199 LVKELKDLGADEVITQEEL--YSRKKKFPGVKLALNCVGGRSSLFLASLLDHGGCMVTYG 256

Query: 314 GMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL 368
           GMS++PV  PT   IFKDI+LRG WM+RW    K   +R  M  EL   M++G++
Sbjct: 257 GMSKQPVDCPTGPLIFKDISLRGFWMSRWYDIQKSPEKRHEMYQELAGWMKSGEI 311

Catalyzes the reduction of trans-2-enoyl-CoA to acyl-CoA. May have a role in the mitochondrial synthesis of fatty acids.

Caenorhabditis elegans (taxid: 6239)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|Q8LCU7|MECR_ARATH Probable trans-2-enoyl-CoA reductase, mitochondrial OS=Arabidopsis thaliana GN=At3g45770 PE=1 SV=1

 Score =  273 bits (697), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 142/325 (43%), Positives = 207/325 (63%), Gaps = 5/325 (1%)

Query: 73  ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPA 132
           +  +VY +HG+P  V  + N     V++++V VKM+ AP+NP+DIN I+GVYP++P +PA
Sbjct: 45  SKAIVYEEHGSPDSVTRLVNLPPVEVKENDVCVKMIAAPINPSDINRIEGVYPVRPPVPA 104

Query: 133 VPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEIS 192
           V G+EGVGEV  VGS+V+  + GD VIP     GTW+ Y      V  K+ K+  +   +
Sbjct: 105 VGGYEGVGEVYAVGSNVNGFSPGDWVIPSPPSSGTWQTYVVKEESVWHKIDKECPMEYAA 164

Query: 193 GITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDID 252
            IT NP TA RML+D+ +L+ GD V+QNGA S  GQ VIQ+AR  G+ TIN++R+R   D
Sbjct: 165 TITVNPLTALRMLEDFVNLNSGDSVVQNGATSIVGQCVIQLARLRGISTINLIRDRAGSD 224

Query: 253 KLKSYLKSLGADYVFTEEEL--RNI-SRDASIPKPKLALNCVGGNSATNLLRTLVSKGVM 309
           + +  LK+LGAD VF+E +L  +N+ S   ++P+P L  NCVGGN+A+ +L+ L   G M
Sbjct: 225 EAREQLKALGADEVFSESQLNVKNVKSLLGNLPEPALGFNCVGGNAASLVLKYLREGGTM 284

Query: 310 VTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLA 369
           VTYGGMS++P+ + T++FIFKD+ LRG W+  W    K   E + M++ L  + R GKL 
Sbjct: 285 VTYGGMSKKPITVSTTSFIFKDLALRGFWLQSWLSMGK-VKECREMIDYLLGLARDGKLK 343

Query: 370 APAHKFVTLKNFQEALMNTMSIQGK 394
               + V  + F  AL   +   G+
Sbjct: 344 Y-ETELVPFEEFPVALDKALGKLGR 367

Catalyzes the reduction of trans-2-enoyl-CoA to acyl-CoA. May have a role in the mitochondrial synthesis of fatty acids.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

>sp|Q54YT4|MECR_DICDI Trans-2-enoyl-CoA reductase, mitochondrial OS=Dictyostelium discoideum GN=mecr PE=3 SV=1

 Score =  260 bits (665), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 141/331 (42%), Positives = 203/331 (61%), Gaps = 13/331 (3%)

Query: 81  HGTPLRVVTVENETL-NSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGV 139
           HG+P   + +ENE + + +   +V+V+ML AP+NPAD+N IQG Y     +  V G EGV
Sbjct: 25  HGSPSTALKIENENITDKISNKDVLVEMLHAPINPADLNIIQGTYGTNVQVGGVAGMEGV 84

Query: 140 GEVVEVGSDVSSLAVGDHVIPD-TQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNP 198
           G V +VGS V+ L   D V+P   QH G+WR+ G ++   L KVP DI    +S I+ NP
Sbjct: 85  GVVKKVGSGVTGLKENDLVVPSMKQHFGSWRSKGVWSEQQLFKVPSDIPTEYLSTISINP 144

Query: 199 CTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL 258
            TAY +L D+  L  GDV+IQN +NS  G +VIQ+A+  G+KTIN++R+  + +     L
Sbjct: 145 TTAYLLLNDFVKLQQGDVIIQNASNSMVGLSVIQLAKARGIKTINVIRDGSEFEDNVQRL 204

Query: 259 KSLGADYVFTEEELRNISRD---ASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGM 315
           K LG D V +EE +R  +     + +P PKLALN VGG SAT L R L   G +VTYGGM
Sbjct: 205 KQLGGDIVVSEEYVRTPAFRKLISDLPSPKLALNAVGGQSATELSRILADNGTLVTYGGM 264

Query: 316 SREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTG--KLAAPAH 373
           SREPV IPTS  IF++I +RG W+ +W +++ +S E++S+ + + +++R    KL    H
Sbjct: 265 SREPVTIPTSQLIFRNIQIRGFWLNKWFEQHTDS-EKQSVYDAIFDLIRKKQFKLLIEKH 323

Query: 374 KFVTLKNFQEALMNTMSIQGKSGVKYYIDFR 404
           KF     F +AL+ +   Q   G K  +D +
Sbjct: 324 KF---SEFDQALLKSQ--QSGHGRKIVLDLQ 349

Catalyzes the reduction of trans-2-enoyl-CoA to acyl-CoA. May have a role in the mitochondrial synthesis of fatty acids.

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
91089675	360	PREDICTED: similar to zinc binding dehyd	0.819	0.922	0.568	1e-109
332374884	365	unknown [Dendroctonus ponderosae]	0.812	0.901	0.540	1e-105
193629721	367	PREDICTED: probable trans-2-enoyl-CoA re	0.812	0.896	0.558	1e-103
383865671	370	PREDICTED: probable trans-2-enoyl-CoA re	0.809	0.886	0.536	1e-103
340709598	370	PREDICTED: probable trans-2-enoyl-CoA re	0.814	0.891	0.515	1e-101
350401046	370	PREDICTED: probable trans-2-enoyl-CoA re	0.814	0.891	0.515	1e-101
328781995	370	PREDICTED: probable trans-2-enoyl-CoA re	0.809	0.886	0.524	1e-101
157104018	353	zinc binding dehydrogenase [Aedes aegypt	0.832	0.954	0.528	1e-100
198460068	356	GA24989 [Drosophila pseudoobscura pseudo	0.839	0.955	0.523	1e-100
380028296	330	PREDICTED: probable trans-2-enoyl-CoA re	0.8	0.981	0.530	1e-100

>gi|91089675|ref|XP_974428.1| PREDICTED: similar to zinc binding dehydrogenase [Tribolium castaneum] gi|270012629|gb|EFA09077.1| hypothetical protein TcasGA2_TC006794 [Tribolium castaneum]

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/334 (56%), Positives = 242/334 (72%), Gaps = 2/334 (0%)

Query: 73  ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPA 132
           A KLVY +HG P++VV   NE +   +  EVV+KML APVNPADINTIQG YP +P LPA
Sbjct: 27  ATKLVYAEHGDPIKVVHTANEPIPKPKDDEVVIKMLAAPVNPADINTIQGKYPSRPPLPA 86

Query: 133 VPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEIS 192
           VPG EGVGEVV VG  V+ L  GD V+P    LGTWR +   + + ++KVPK + L E +
Sbjct: 87  VPGNEGVGEVVSVGQGVNDLKEGDRVVPLVNALGTWRTHTVVSKNNVLKVPKKLGLVEAA 146

Query: 193 GITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDID 252
            +T NPCTA+RML+D+  L PGD VIQNGANSACGQNVIQI R WGL+++NIVR+R  ID
Sbjct: 147 TLTVNPCTAFRMLRDFVDLKPGDTVIQNGANSACGQNVIQICRAWGLRSVNIVRDRAGID 206

Query: 253 KLKSYLKSLGADYVFTEEELR--NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMV 310
           +L+ +L++LGA++V TEEELR   I +   + KPKLALNCVGG +A  ++R L   G MV
Sbjct: 207 ELRCFLQNLGANHVLTEEELRKTEIFKSGKLEKPKLALNCVGGQNALEVMRHLDKGGTMV 266

Query: 311 TYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA 370
           TYGGMSREPV +PTSA IFKD+ +RG WMT W K+N +S +R  M  EL  MM T +L  
Sbjct: 267 TYGGMSREPVTVPTSALIFKDLRIRGFWMTDWTKQNADSVDRFEMFEELISMMTTNELQG 326

Query: 371 PAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR 404
           PA K V+ + ++EALMNTM+I+G  G KY ++F+
Sbjct: 327 PAFKMVSFEQYKEALMNTMTIKGMIGKKYILEFK 360

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374884|gb|AEE62583.1| unknown [Dendroctonus ponderosae]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 179/331 (54%), Positives = 242/331 (73%), Gaps = 2/331 (0%)

Query: 75  KLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVP 134
           KL+Y+++G PL+VV +    L   Q  EVVVK+LVAPVNPADINTIQG YP KP LPAVP
Sbjct: 34  KLLYSEYGDPLKVVNLSPAELRDPQPDEVVVKLLVAPVNPADINTIQGKYPSKPALPAVP 93

Query: 135 GFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGI 194
           G EGVG+V++VG++V  L  GDHV+P  Q+LGTW+ +   + D+++KVP+ + + E + +
Sbjct: 94  GNEGVGQVIKVGANVKDLVEGDHVVPLRQNLGTWQTHLVLSKDIVLKVPQKLGVIEAATL 153

Query: 195 TSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKL 254
           T NPCTAYRML+D+  L PGD VIQNG+NSACGQ +IQI R WG++TINI+R+R ++  L
Sbjct: 154 TVNPCTAYRMLRDFTELKPGDSVIQNGSNSACGQYIIQICRSWGIRTINIIRDRPNVSDL 213

Query: 255 KSYLKSLGADYVFTEEELR--NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTY 312
           K+YL +LGA +V TEEELR  +I +   I KPKLALNCVGG +A    R L +   MVTY
Sbjct: 214 KAYLTNLGATHVLTEEELRTTDIFKSGQINKPKLALNCVGGKNALECSRHLQNGSPMVTY 273

Query: 313 GGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPA 372
           GGMSREP+ +PT+A IFKD+  RG WMTRW ++N  S +R  M +EL  MM + +L  P+
Sbjct: 274 GGMSREPLSVPTAALIFKDLQFRGFWMTRWSEKNATSIDRFEMYSELISMMTSNELHGPS 333

Query: 373 HKFVTLKNFQEALMNTMSIQGKSGVKYYIDF 403
           ++ V   N++EAL+NT++++G  G KY + F
Sbjct: 334 YELVDFHNYKEALINTLTVKGMIGKKYLLKF 364

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193629721|ref|XP_001949333.1| PREDICTED: probable trans-2-enoyl-CoA reductase, mitochondrial-like [Acyrthosiphon pisum]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 187/335 (55%), Positives = 249/335 (74%), Gaps = 6/335 (1%)

Query: 75  KLVYNQHGTPLRVVTVENETL-NSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAV 133
           K+VY ++G P++VV++  +TL + +   +V+VKM+VAPVNPADINTIQGVYP+KP LPA 
Sbjct: 34  KIVYEEYGDPMKVVSLVEQTLPDKLDDEQVLVKMIVAPVNPADINTIQGVYPVKPPLPAT 93

Query: 134 PGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISG 193
            G+EG+G+V+ VGS V +L  GD VIP    +GTW   G F+  +L KV KD  +  +S 
Sbjct: 94  GGYEGIGDVLAVGSGVKNLCPGDRVIP-VGAMGTWCTAGVFDSKLLRKVSKDTNVYALSS 152

Query: 194 ITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD--DI 251
           ITSNPCTAYRML D+ SL+  DV+IQNGANSACGQN+IQ+A  +G  T+NI+RNR   D+
Sbjct: 153 ITSNPCTAYRMLHDFVSLNKNDVIIQNGANSACGQNIIQLANIFGYTTVNIIRNRPEPDL 212

Query: 252 DKLKSYLKSLGADYVFTEEELR--NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVM 309
           + LK+ LK LGA YV TEEELR  ++ R   +PKP+L +N +GG S+T +LRTL + GVM
Sbjct: 213 ENLKNLLKCLGASYVLTEEELRTTDLFRSGVLPKPRLGINNIGGKSSTEVLRTLNNGGVM 272

Query: 310 VTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLA 369
           VTYGGMSREPV +PT++FIFKDI LRG WMTRW+KEN  + +   M +EL + M+ GKL 
Sbjct: 273 VTYGGMSREPVIVPTASFIFKDIQLRGFWMTRWRKENANTEQYNQMYDELLQFMKDGKLV 332

Query: 370 APAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR 404
           APA+K + L +F+EAL NT+S +G  G KY++D +
Sbjct: 333 APAYKTLPLNSFKEALKNTISSKGFIGHKYFLDLQ 367

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865671|ref|XP_003708296.1| PREDICTED: probable trans-2-enoyl-CoA reductase, mitochondrial-like [Megachile rotundata]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 177/330 (53%), Positives = 237/330 (71%), Gaps = 2/330 (0%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
           L Y ++G P+ V+ +  +T+N  + ++V VK L+APVNPADINTIQG YP KP LPA+PG
Sbjct: 38  LFYKEYGEPVDVLHITTQTINQPESNQVSVKWLLAPVNPADINTIQGKYPSKPPLPAIPG 97

Query: 136 FEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGIT 195
            EGVGEV+ VG +V  L+VGD VIP+  +LGTWR +  +  + LMKVPKD+   E S + 
Sbjct: 98  NEGVGEVIAVGPNVKDLSVGDRVIPNGVNLGTWRTHANYKSEELMKVPKDVGTIEASMLN 157

Query: 196 SNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK 255
            NPCTAYRMLKD+ +L PGD VIQNG NSA GQ VIQ+ + W  K++N+VR+R +I +LK
Sbjct: 158 VNPCTAYRMLKDFVALGPGDTVIQNGGNSAVGQMVIQLCKAWNFKSVNVVRDRPNITELK 217

Query: 256 SYLKSLGADYVFTEEELR--NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYG 313
           +YL +LGAD VFTE+E+R   I ++  +P PKLALNC+ G +A  ++R L   G+MVTYG
Sbjct: 218 NYLINLGADEVFTEDEIRKTQIFKNKKLPPPKLALNCICGQNALEIMRHLSHGGIMVTYG 277

Query: 314 GMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAH 373
           GMSREP+ +PTSA IFKDITL+G WMT W K N  S ER++M  +L  + R  K+ AP H
Sbjct: 278 GMSREPITVPTSALIFKDITLKGFWMTAWTKANMNSKERENMFTQLGILFRDKKMKAPPH 337

Query: 374 KFVTLKNFQEALMNTMSIQGKSGVKYYIDF 403
           K V    +QEA++N +++ G+ GVKY +D 
Sbjct: 338 KLVPFCQYQEAVINALNMNGRIGVKYILDM 367

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709598|ref|XP_003393392.1| PREDICTED: probable trans-2-enoyl-CoA reductase, mitochondrial-like [Bombus terrestris]

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 171/332 (51%), Positives = 236/332 (71%), Gaps = 2/332 (0%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
           L Y ++G P+ V+ V  +++N  + ++V VK L+APVNPADINTIQG YP KP LPA+PG
Sbjct: 38  LFYKEYGEPVDVLHVTTQSINQPENNQVSVKWLLAPVNPADINTIQGKYPSKPPLPAIPG 97

Query: 136 FEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGIT 195
            EGVGE++ +GS+V  L +GD VIP+  HLGTWR +  +  + L+KVPK++ + E S + 
Sbjct: 98  NEGVGEIIAIGSNVKYLNIGDRVIPNGTHLGTWRTHANYTVEELLKVPKEVGVVEASMLN 157

Query: 196 SNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK 255
            NPCTAYRMLKD+  L PGD VIQNG NSA GQ +IQ+ + W  K+++++R+R +I++LK
Sbjct: 158 VNPCTAYRMLKDFVELKPGDTVIQNGGNSAVGQMIIQLCKIWNYKSVSVIRDRPNIEELK 217

Query: 256 SYLKSLGADYVFTEEELR--NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYG 313
           +YL SLGAD + TE+E+R   I +   +P PKLALNC+ G +A  +LR L   G+MVTYG
Sbjct: 218 NYLTSLGADEILTEDEIRKTQIFKSKKLPSPKLALNCICGQNALEVLRHLAHGGIMVTYG 277

Query: 314 GMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAH 373
           GMSREP+ +PTSA IFKDITL+G WMT W K N  S ER+ M +EL  + +  +L AP H
Sbjct: 278 GMSREPLTVPTSALIFKDITLKGFWMTAWTKVNMNSKEREKMFSELGALFKDKRLKAPPH 337

Query: 374 KFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ 405
           K V    +QEA++N +   G++GVKY +D  +
Sbjct: 338 KLVPFCQYQEAVINALHTDGRTGVKYILDMTK 369

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401046|ref|XP_003486037.1| PREDICTED: probable trans-2-enoyl-CoA reductase, mitochondrial-like [Bombus impatiens]

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 171/332 (51%), Positives = 236/332 (71%), Gaps = 2/332 (0%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
           L Y ++G P+ V+ V  +++N  + ++V VK L+APVNPADINTIQG YP KP LPA+PG
Sbjct: 38  LFYKEYGEPVDVLHVTTQSINQPENNQVSVKWLLAPVNPADINTIQGKYPSKPPLPAIPG 97

Query: 136 FEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGIT 195
            EGVGE++ +GS+V  L +GD VIP+  HLGTWR +  +  + L+KVPK++ + E S + 
Sbjct: 98  NEGVGEIIAIGSNVKYLNIGDRVIPNGTHLGTWRTHANYTVEELLKVPKEVGVVEASMLN 157

Query: 196 SNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK 255
            NPCTAYRMLKD+  L PGD VIQNG NSA GQ +IQ+ + W  K+++++R+R +I++LK
Sbjct: 158 VNPCTAYRMLKDFVKLKPGDTVIQNGGNSAVGQMIIQLCKIWNYKSVSVIRDRPNIEELK 217

Query: 256 SYLKSLGADYVFTEEELR--NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYG 313
           +YL SLGAD + TE+E+R   I +   +P PKLALNC+ G +A  +LR L   G+MVTYG
Sbjct: 218 NYLTSLGADEILTEDEIRKTQIFKTKKLPSPKLALNCICGQNALEVLRHLAHGGIMVTYG 277

Query: 314 GMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAH 373
           GMSREP+ +PTSA IFKDITL+G WMT W K N  S ER+ M +EL  + +  +L AP H
Sbjct: 278 GMSREPLTVPTSALIFKDITLKGFWMTAWTKVNMNSKEREKMFSELGALFKDKRLKAPPH 337

Query: 374 KFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ 405
           K V    +QEA++N +   G++GVKY +D  +
Sbjct: 338 KLVPFCQYQEAVINALHTDGRTGVKYILDMTK 369

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328781995|ref|XP_395130.4| PREDICTED: probable trans-2-enoyl-CoA reductase, mitochondrial-like [Apis mellifera]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 173/330 (52%), Positives = 230/330 (69%), Gaps = 2/330 (0%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
           L Y ++G P  V+ V  + +N  + +EV VK L+APVNPADINTIQG YP KP LPA+PG
Sbjct: 38  LFYKEYGEPADVLHVTTQPINQPENNEVSVKWLLAPVNPADINTIQGKYPSKPPLPAIPG 97

Query: 136 FEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGIT 195
            EGVGEV+ +GS+V  L+VGD VIP+  +LGTWR Y  +  + LMKVPK+I   E S + 
Sbjct: 98  NEGVGEVIAIGSNVKHLSVGDRVIPNGTNLGTWRTYANYTSEELMKVPKEIGTIEASMLN 157

Query: 196 SNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK 255
            NPCTAYRMLKD+  L PGD +IQNG NSA GQ VIQ+ + W  K++++VR+R +I +LK
Sbjct: 158 VNPCTAYRMLKDFVELKPGDTIIQNGGNSAVGQMVIQLCKEWNYKSVSVVRDRPNIQELK 217

Query: 256 SYLKSLGADYVFTEEELR--NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYG 313
           ++L SLGAD + TE E+R   I +   +P PKLALNC+ G +A  + R L   G+M+TYG
Sbjct: 218 NHLSSLGADEILTENEIRKTQIFKSKKLPSPKLALNCICGQNALEISRHLAHGGIMITYG 277

Query: 314 GMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAH 373
           GMSREP+ +P SA IFKDIT +G WMT W K+N +S ER++M  EL  + +  KL AP H
Sbjct: 278 GMSREPLTVPISALIFKDITFKGFWMTAWTKKNMDSIERQNMFRELGALFKNKKLKAPLH 337

Query: 374 KFVTLKNFQEALMNTMSIQGKSGVKYYIDF 403
           K V    +QEA++N +   G++GVKY +D 
Sbjct: 338 KLVPFHQYQEAVINALHTDGRTGVKYILDM 367

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157104018|ref|XP_001648220.1| zinc binding dehydrogenase [Aedes aegypti] gi|108880436|gb|EAT44661.1| AAEL003995-PA [Aedes aegypti]

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/339 (52%), Positives = 228/339 (67%), Gaps = 2/339 (0%)

Query: 67  RGFSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPI 126
           R  S +A+ L Y++ G P +V+ V+ ET+      EV++K L AP+NPADINTIQG YP+
Sbjct: 15  RHMSVVASVLRYSEFGDPAKVIQVQQETVADPSNGEVLIKTLGAPINPADINTIQGKYPV 74

Query: 127 KPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDI 186
           KP  PAV G E VGEVV +G  V  L VGD V+P    LGTWR++  +    LMKVP  I
Sbjct: 75  KPQFPAVGGNECVGEVVAIGGQVGGLKVGDRVVPFATGLGTWRSHALYKESNLMKVPNSI 134

Query: 187 ALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVR 246
              E + IT NPCTAYRMLKD+ SL  GD VIQNGANSACGQ VIQ+ R WG+  + IVR
Sbjct: 135 GTVEAATITVNPCTAYRMLKDFVSLKAGDTVIQNGANSACGQAVIQLCRAWGVDCVGIVR 194

Query: 247 NRDDIDKLKSYLKSLGADYVFTEEELRN--ISRDASIPKPKLALNCVGGNSATNLLRTLV 304
           +R +  KL+ YLK LGA  + TEEELR   I +D    KPKLALNCVGG +A  + R L 
Sbjct: 195 DRPEFSKLRDYLKDLGAAEILTEEELRTTKIFKDGLFKKPKLALNCVGGKNALEVSRHLD 254

Query: 305 SKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMR 364
           ++G+MVTYGGMSREPV +PT++ IFKD+   G WMTRW KEN ++ +R  M +EL E++ 
Sbjct: 255 NQGIMVTYGGMSREPVTVPTASLIFKDLQFSGFWMTRWTKENAQNPKRAEMFSELFELIG 314

Query: 365 TGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF 403
            G L APAH+ +   +++ A+ N +SIQG  G KY   F
Sbjct: 315 KGVLKAPAHELIAFTDYKTAVTNALSIQGFVGKKYIFTF 353

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198460068|ref|XP_002138778.1| GA24989 [Drosophila pseudoobscura pseudoobscura] gi|198136893|gb|EDY69336.1| GA24989 [Drosophila pseudoobscura pseudoobscura]

 Score =  372 bits (955), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 179/342 (52%), Positives = 228/342 (66%), Gaps = 2/342 (0%)

Query: 66  ARGFSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYP 125
            R  S +A  L Y QHG P  V+ +  + L   +  +V+V++L AP+NPADINTIQG YP
Sbjct: 15  CRQMSVVAKSLKYTQHGEPQDVLKLVEDQLADPKDKQVLVRILAAPINPADINTIQGKYP 74

Query: 126 IKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKD 185
           +KP  PAV G E VGEV+ VG +V  L  G+HVIP    LGTW  YG +N + LM VPK 
Sbjct: 75  VKPKFPAVAGNEFVGEVICVGENVKGLQAGEHVIPLATGLGTWTTYGLYNQNQLMTVPKK 134

Query: 186 IALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIV 245
           + L E + +T NPCTAYRMLKD+  LSPGD VIQNGANSA GQ V Q+ R WG+ +I IV
Sbjct: 135 VGLAEAATVTVNPCTAYRMLKDFVKLSPGDTVIQNGANSAVGQAVHQLCRAWGINSIGIV 194

Query: 246 RNRDDIDKLKSYLKSLGADYVFTEEELR--NISRDASIPKPKLALNCVGGNSATNLLRTL 303
           R+R +I +LK  L+ LGA  V TE E+R  +I +   + +PKLA NCVGG SAT + R L
Sbjct: 195 RDRPEICELKQLLECLGATAVLTEAEIRTSDIFKTGKVKRPKLAFNCVGGKSATEVSRHL 254

Query: 304 VSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMM 363
             +GVMVTYGGMSREPV + T   IFKDI  RG WMTRW KEN ++ ERK M  EL E+M
Sbjct: 255 DDRGVMVTYGGMSREPVTVATGPLIFKDIAFRGFWMTRWSKENYDAPERKQMFKELFELM 314

Query: 364 RTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ 405
             GK  AP H+ V L+ F++A    +S +G +G K+ ++ R+
Sbjct: 315 EQGKFVAPTHEMVPLEKFKDAAAAALSFKGFTGKKFILNMRE 356

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028296|ref|XP_003697842.1| PREDICTED: probable trans-2-enoyl-CoA reductase, mitochondrial-like [Apis florea]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/326 (53%), Positives = 229/326 (70%), Gaps = 2/326 (0%)

Query: 80  QHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGV 139
           ++G P  V+ V  + +N  + +EV VK L+APVNPADINTIQG YP KP LPA+PG EGV
Sbjct: 2   KYGEPADVLHVTTQPINQPENNEVSVKWLLAPVNPADINTIQGKYPSKPPLPAIPGNEGV 61

Query: 140 GEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPC 199
           GEV+ +GS+V  L+VGD VIP+  +LGTWR Y  +  + LMKVPK+I   E S +  NPC
Sbjct: 62  GEVIAIGSNVKHLSVGDRVIPNGTNLGTWRTYANYTSEELMKVPKEIGTIEASMLNVNPC 121

Query: 200 TAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK 259
           TAYRMLKD+  L PGD VIQNG NSA GQ VIQ+ + W  K++++VR+R +I +LK++L 
Sbjct: 122 TAYRMLKDFVKLKPGDTVIQNGGNSAVGQMVIQLCKVWDYKSVSVVRDRPNIQELKNHLS 181

Query: 260 SLGADYVFTEEELR--NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSR 317
           SLGAD +FTE E+R   I +   +P PKLALNC+ G +A  + R L   G+M+TYGGMSR
Sbjct: 182 SLGADEIFTENEIRKTQIFKSKKLPSPKLALNCICGQNALEVSRHLAHGGIMITYGGMSR 241

Query: 318 EPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVT 377
           EP+ +P SA IFKDIT +G WMT W K+N +S ER++M  EL  + +  KL AP HK V 
Sbjct: 242 EPLTVPISALIFKDITFKGFWMTAWTKKNMDSIERQNMFRELGALFKNKKLKAPLHKLVP 301

Query: 378 LKNFQEALMNTMSIQGKSGVKYYIDF 403
              +QEA++N +   G++GVKY +D 
Sbjct: 302 FHQYQEAVLNALHTDGRTGVKYILDM 327

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	405
FB|FBgn0033883	357	CG16935 [Drosophila melanogast	0.832	0.943	0.480	3.7e-80
RGD|3208	373	Mecr "mitochondrial trans-2-en	0.767	0.833	0.498	1.9e-74
UNIPROTKB|Q9Z311	373	Mecr "Trans-2-enoyl-CoA reduct	0.767	0.833	0.498	1.9e-74
UNIPROTKB|Q9BV79	373	MECR "Trans-2-enoyl-CoA reduct	0.767	0.833	0.489	4.6e-73
MGI|MGI:1349441	373	Mecr "mitochondrial trans-2-en	0.767	0.833	0.492	9.6e-73
UNIPROTKB|Q28GQ2	350	mecr "Trans-2-enoyl-CoA reduct	0.8	0.925	0.445	2.9e-71
ZFIN|ZDB-GENE-050417-399	377	mecr "mitochondrial trans-2-en	0.775	0.832	0.471	1.3e-70
UNIPROTKB|E2R1T2	367	MECR "Uncharacterized protein"	0.795	0.877	0.466	3.3e-70
UNIPROTKB|Q7YS70	373	MECR "Trans-2-enoyl-CoA reduct	0.762	0.828	0.463	4e-67
WB|WBGene00012375	344	mecr-1 [Caenorhabditis elegans	0.755	0.889	0.450	4.1e-65

FB|FBgn0033883 CG16935 [Drosophila melanogaster (taxid:7227)]

 Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
 Identities = 163/339 (48%), Positives = 207/339 (61%)

Query:    66 ARGFSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYP 125
             +R  S +A  L Y QHG P  V+ +  + L   + ++V+VK+L AP+NPADINTIQG YP
Sbjct:    16 SRQMSVVAKSLKYTQHGEPQEVLQLVEDKLPDPKDNQVLVKILAAPINPADINTIQGKYP 75

Query:   126 IKPTLPAVPGFXXXXXXXXXXXXXXXLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKD 185
             +KP  PAV G                   G HVIP    LGTW  +  +  D L+ V K 
Sbjct:    76 VKPKFPAVGGNECVAEVICVGDKVKGFEAGQHVIPLASGLGTWTTHAVYKEDQLLIVSKK 135

Query:   186 IALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIV 245
             + L E +  T NP TAYRMLKD+  L PGD VIQNGANSA GQ V Q+ R WG+ ++ IV
Sbjct:   136 VGLAEAATSTVNPTTAYRMLKDFVQLCPGDTVIQNGANSAVGQAVHQLCRAWGINSVGIV 195

Query:   246 RNRDDIDKLKSYLKSLGADYVFTEEELR--NISRDASIPKPKLALNCVGGNSATNLLRTL 303
             R+R +I +LK  L+ LGA  V TE E+R  +I +   + KP+LA NCVGG SAT + R L
Sbjct:   196 RDRPEIAELKQMLQCLGATEVLTEAEIRTSDIFKSGKLKKPRLAFNCVGGKSATEVSRHL 255

Query:   304 VSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMM 363
              + GV+VTYGGMSREPV + T   IFKDI  RG WMTRW KEN  S ER  M  E+ E+M
Sbjct:   256 DNGGVLVTYGGMSREPVTVATGPLIFKDIAFRGFWMTRWSKENYSSPERSKMFKEIFELM 315

Query:   364 RTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYID 402
               GK  AP H+ V L  F++A    +S +G +G KY +D
Sbjct:   316 EQGKFVAPNHEMVPLAKFKDAAAAALSFKGFTGKKYILD 354

GO:0008270 "zinc ion binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=ISS

GO:0019166 "trans-2-enoyl-CoA reductase (NADPH) activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005875 "microtubule associated complex" evidence=IDA

RGD|3208 Mecr "mitochondrial trans-2-enoyl-CoA reductase" [Rattus norvegicus (taxid:10116)]

 Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
 Identities = 159/319 (49%), Positives = 202/319 (63%)

Query:    76 LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
             LVY  HG P +V+ ++N  L +V+  +V VKML AP+NP+DIN IQG Y + P LPAV G
Sbjct:    46 LVYGNHGDPAKVIQLKNLELTAVEGSDVHVKMLAAPINPSDINMIQGNYGLLPKLPAVGG 105

Query:   136 FXXXXXXXXXXXXXXXLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGIT 195
                             L  GD VIP    LGTWR    F+ + L+ VPKDI L   + + 
Sbjct:   106 NEGVGQVIAVGSSVSGLKPGDWVIPANAGLGTWRTEAVFSEEALIGVPKDIPLQSAATLG 165

Query:   196 SNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK 255
              NPCTAYRML D+  L PGD VIQN +NS  GQ VIQIA   GLKTIN++R+R DI KL 
Sbjct:   166 VNPCTAYRMLVDFEQLQPGDSVIQNASNSGVGQAVIQIASALGLKTINVIRDRPDIKKLT 225

Query:   256 SYLKSLGADYVFTEEELR-----NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMV 310
               LK LGADYV TEEELR     NI +D  +P P+LALNCVGG S+T LLR L   G MV
Sbjct:   226 DRLKDLGADYVLTEEELRMPETKNIFKD--LPLPRLALNCVGGKSSTELLRHLAPGGTMV 283

Query:   311 TYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA 370
             TYGGM+++PV    S  IFKD+ LRG W+++W+K N    E K ++  L  ++R G+L A
Sbjct:   284 TYGGMAKQPVTASVSMLIFKDLKLRGFWLSQWKK-NHSPDEFKELILILCNLIRQGQLTA 342

Query:   371 PAHKFVTLKNFQEALMNTM 389
             PA   + L+++Q+AL  +M
Sbjct:   343 PAWSGIPLQDYQQALEASM 361

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005102 "receptor binding" evidence=IDA

GO:0005739 "mitochondrion" evidence=IEA;ISO;IDA

GO:0006631 "fatty acid metabolic process" evidence=IEA;ISO;ISS

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0019166 "trans-2-enoyl-CoA reductase (NADPH) activity" evidence=IEA;ISO;ISS

UNIPROTKB|Q9Z311 Mecr "Trans-2-enoyl-CoA reductase, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
 Identities = 159/319 (49%), Positives = 202/319 (63%)

Query:    76 LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
             LVY  HG P +V+ ++N  L +V+  +V VKML AP+NP+DIN IQG Y + P LPAV G
Sbjct:    46 LVYGNHGDPAKVIQLKNLELTAVEGSDVHVKMLAAPINPSDINMIQGNYGLLPKLPAVGG 105

Query:   136 FXXXXXXXXXXXXXXXLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGIT 195
                             L  GD VIP    LGTWR    F+ + L+ VPKDI L   + + 
Sbjct:   106 NEGVGQVIAVGSSVSGLKPGDWVIPANAGLGTWRTEAVFSEEALIGVPKDIPLQSAATLG 165

Query:   196 SNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK 255
              NPCTAYRML D+  L PGD VIQN +NS  GQ VIQIA   GLKTIN++R+R DI KL 
Sbjct:   166 VNPCTAYRMLVDFEQLQPGDSVIQNASNSGVGQAVIQIASALGLKTINVIRDRPDIKKLT 225

Query:   256 SYLKSLGADYVFTEEELR-----NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMV 310
               LK LGADYV TEEELR     NI +D  +P P+LALNCVGG S+T LLR L   G MV
Sbjct:   226 DRLKDLGADYVLTEEELRMPETKNIFKD--LPLPRLALNCVGGKSSTELLRHLAPGGTMV 283

Query:   311 TYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA 370
             TYGGM+++PV    S  IFKD+ LRG W+++W+K N    E K ++  L  ++R G+L A
Sbjct:   284 TYGGMAKQPVTASVSMLIFKDLKLRGFWLSQWKK-NHSPDEFKELILILCNLIRQGQLTA 342

Query:   371 PAHKFVTLKNFQEALMNTM 389
             PA   + L+++Q+AL  +M
Sbjct:   343 PAWSGIPLQDYQQALEASM 361

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q9BV79 MECR "Trans-2-enoyl-CoA reductase, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
 Identities = 156/319 (48%), Positives = 203/319 (63%)

Query:    76 LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
             LVY  HG P +VV ++N  L +V+  +V VKML AP+NP+DIN IQG Y   P LPAV G
Sbjct:    46 LVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGFLPELPAVGG 105

Query:   136 FXXXXXXXXXXXXXXXLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGIT 195
                             L  GD VIP    LGTWR    F+ + L++VP DI L   + + 
Sbjct:   106 NEGVAQVVAVGSNVTGLKPGDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLG 165

Query:   196 SNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK 255
              NPCTAYRML D+  L PGD VIQN +NS  GQ VIQIA   GL+TIN+VR+R DI KL 
Sbjct:   166 VNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLS 225

Query:   256 SYLKSLGADYVFTEEELR-----NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMV 310
               LKSLGA++V TEEELR     N  +D  +P+P+LALNCVGG S+T LLR L   G MV
Sbjct:   226 DRLKSLGAEHVITEEELRRPEMKNFFKD--MPQPRLALNCVGGKSSTELLRQLARGGTMV 283

Query:   311 TYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA 370
             TYGGM+++PV    S  IFKD+ LRG W+++W+K++    + K ++  L +++R G+L A
Sbjct:   284 TYGGMAKQPVVASVSLLIFKDLKLRGFWLSQWKKDHSPD-QFKELILTLCDLIRRGQLTA 342

Query:   371 PAHKFVTLKNFQEALMNTM 389
             PA   V L+++Q AL  +M
Sbjct:   343 PACSQVPLQDYQSALEASM 361

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0019166 "trans-2-enoyl-CoA reductase (NADPH) activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

MGI|MGI:1349441 Mecr "mitochondrial trans-2-enoyl-CoA reductase" [Mus musculus (taxid:10090)]

 Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
 Identities = 157/319 (49%), Positives = 199/319 (62%)

Query:    76 LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
             LVY  HG P +VV ++N  L +V+  +V V+ML AP+NP+DIN IQG Y + P LPAV G
Sbjct:    46 LVYGNHGDPAKVVQLKNLELTAVEGSDVHVRMLAAPINPSDINMIQGNYGLLPKLPAVGG 105

Query:   136 FXXXXXXXXXXXXXXXLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGIT 195
                             L  GD VIP    LGTWR    F+ + L+ +PKDI L   + + 
Sbjct:   106 NEGVGQVIAVGSSVSALKPGDWVIPANAGLGTWRTEAVFSEEALIGIPKDIPLQSAATLG 165

Query:   196 SNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK 255
              NPCTAYRML D+  L PGD VIQN +NS  GQ VIQIA    LKTIN+VR+R DI KL 
Sbjct:   166 VNPCTAYRMLVDFEQLQPGDSVIQNASNSGVGQAVIQIASALRLKTINVVRDRPDIKKLT 225

Query:   256 SYLKSLGADYVFTEEELR-----NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMV 310
               LK LGADYV TEEELR      I +D  +P P+LALNCVGG S+T LLR L   G MV
Sbjct:   226 DRLKDLGADYVLTEEELRMPETKTIFKD--LPLPRLALNCVGGKSSTELLRHLAPGGTMV 283

Query:   311 TYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA 370
             TYGGM+++PV    S  IFKD+ LRG W+++W+K N    E K ++  L  ++R G+L A
Sbjct:   284 TYGGMAKQPVTASVSLLIFKDLKLRGFWLSQWKK-NHSPDEFKELILTLCNLIRQGRLTA 342

Query:   371 PAHKFVTLKNFQEALMNTM 389
             P+   V L+ +Q+AL  +M
Sbjct:   343 PSCSEVPLQGYQQALEASM 361

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005102 "receptor binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005829 "cytosol" evidence=ISO

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=ISO

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016922 "ligand-dependent nuclear receptor binding" evidence=ISO

GO:0019166 "trans-2-enoyl-CoA reductase (NADPH) activity" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|Q28GQ2 mecr "Trans-2-enoyl-CoA reductase, mitochondrial" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
 Identities = 147/330 (44%), Positives = 207/330 (62%)

Query:    67 RGFSYLANK-LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYP 125
             R FS LA + LVY +HG PL+V+ ++N  +     +EV VKML AP+NP+DIN +QG Y 
Sbjct:    10 RPFSSLAARGLVYEKHGEPLQVLRLKNVNITHPADNEVRVKMLAAPINPSDINMVQGTYA 69

Query:   126 IKPTLPAVPGFXXXXXXXXXXXXXXXLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKD 185
             + P LPAV G                +  GD V+P    LGTW     F+ D L++VP D
Sbjct:    70 LLPQLPAVGGNEGVGVVVEIGRHVSSMRPGDWVVPVDAGLGTWCTEAVFSEDSLVRVPSD 129

Query:   186 IALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIV 245
             I +   + ++ NPCTAYR+L D+ +L PGD +IQN +NS  GQ VIQIA   G+ TIN+V
Sbjct:   130 IPVAGAATVSVNPCTAYRLLSDFETLRPGDTIIQNASNSGVGQAVIQIATSLGITTINVV 189

Query:   246 RNRDDIDKLKSYLKSLGADYVFTEEELRNIS-RDA--SIPKPKLALNCVGGNSATNLLRT 302
             R+R+D+  L   L+ LGAD+V TEE+LR    +D   + P+P+LALNCVGG S T +LR 
Sbjct:   190 RDREDLSSLIQRLRDLGADHVITEEQLRKPEMKDLFKNCPRPRLALNCVGGKSTTEMLRH 249

Query:   303 LVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERK--SMMNELT 360
             L   G MVTYGGMS++PV +P SA IFK++ L G W+T+W+KE  ++   +   M+ +L 
Sbjct:   250 LDYGGTMVTYGGMSKQPVTVPVSALIFKNVKLCGFWVTQWKKERAQTDREEIVKMIRDLC 309

Query:   361 EMMRTGKLAAPAHKFVTLKNFQEALMNTMS 390
             +++R GKL  P      L++F  AL ++ +
Sbjct:   310 DLIRRGKLVPPPSTQRPLEDFSRALQDSQT 339

GO:0039020 "pronephric nephron tubule development" evidence=IMP

ZFIN|ZDB-GENE-050417-399 mecr "mitochondrial trans-2-enoyl-CoA reductase" [Danio rerio (taxid:7955)]

 Score = 715 (256.8 bits), Expect = 1.3e-70, P = 1.3e-70
 Identities = 150/318 (47%), Positives = 199/318 (62%)

Query:    76 LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
             L+Y  HG P +VV +E+  L  V    V+VKML AP+NP+D+N +QG Y I P LPAV G
Sbjct:    48 LLYRNHGEPSQVVQLESLDLPQVGAECVLVKMLAAPINPSDLNMLQGTYAILPELPAVGG 107

Query:   136 FXXXXXXXXXXXXXXXLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGIT 195
                             L VGD VIP    +GTWR       D L+ +PKDI +   + + 
Sbjct:   108 NEGVAQVMEVGDKVKTLKVGDWVIPKDAGIGTWRTAAVLKADDLVTLPKDIPVLSAATLG 167

Query:   196 SNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK 255
              NPCTAYRML D+  L  GD VIQN ANS  GQ VIQIA   G+ TIN++R+R D+ +L 
Sbjct:   168 VNPCTAYRMLTDFEELKAGDTVIQNAANSGVGQAVIQIAAAKGIHTINVIRDRPDLRQLS 227

Query:   256 SYLKSLGADYVFTEEELRNISRDA---SIPKPKLALNCVGGNSATNLLRTLVSKGVMVTY 312
               L ++GA +V TEE LR         S P+PKLALN VGG SAT LLR L S G +VTY
Sbjct:   228 DRLTAMGATHVITEETLRRPEMKELFKSCPRPKLALNGVGGKSATELLRHLQSGGSLVTY 287

Query:   313 GGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAER-KSMMNELTEMMRTGKLAAP 371
             GGM+++PV +P SA IFKD+ +RG W+T+W+++N+   E  + M++EL  ++R GKL+AP
Sbjct:   288 GGMAKQPVTVPVSALIFKDVRVRGFWVTQWKRDNRHDDEALRHMLDELCILIRAGKLSAP 347

Query:   372 AHKFVTLKNFQEALMNTM 389
                 V L++F++AL N M
Sbjct:   348 ICTQVQLQDFRKALENAM 365

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0019166 "trans-2-enoyl-CoA reductase (NADPH) activity" evidence=IEA

GO:0039020 "pronephric nephron tubule development" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

UNIPROTKB|E2R1T2 MECR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
 Identities = 154/330 (46%), Positives = 204/330 (61%)

Query:    65 SARGFSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVY 124
             SA   S     L+Y  HG P +VV ++N  L +V   +V VKML AP+NP+DIN IQG Y
Sbjct:    28 SAPAESSRVRALIYGHHGDPAKVVELKNLELAAVGGSDVHVKMLAAPINPSDINMIQGNY 87

Query:   125 PIKPTLPAVPGFXXXXXXXXXXXXXXXLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPK 184
              + P LPAV G                +  GD VIP    LGTWR    F+ + L+ VP 
Sbjct:    88 GLLPKLPAVGGNEGVGQVVAVGGSVTGVKPGDWVIPANAGLGTWRTEAVFSEEALIGVPS 147

Query:   185 DIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINI 244
             DI L   + +  NPCTAYRML D+  L PGD VIQN +NS  GQ VIQIA   GL+TIN+
Sbjct:   148 DIPLQSAATLGVNPCTAYRMLMDFEQLQPGDWVIQNASNSGVGQAVIQIAAALGLRTINV 207

Query:   245 VRNRDDIDKLKSYLKSLGADYVFTEEELR-----NISRDASIPKPKLALNCVGGNSATNL 299
             VR+R D+ +L   LKSLGA++V TEEELR     N  +D  +P+P+LALNCVGG S+T L
Sbjct:   208 VRDRPDLQELTDRLKSLGAEHVLTEEELRKHEMKNFFKD--MPQPRLALNCVGGKSSTEL 265

Query:   300 LRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNEL 359
             LR L   G MVTYGGM+++PV    S  IFKD+ LRG W+++W+K++   A+ K ++  L
Sbjct:   266 LRHLAPGGTMVTYGGMAKQPVIASVSQLIFKDLKLRGFWLSQWKKDHSP-AQFKELILTL 324

Query:   360 TEMMRTGKLAAPAHKFVTLKNFQEALMNTM 389
               ++  G+L APA   V L++++ AL  +M
Sbjct:   325 CGLIGRGQLTAPACSEVPLQDYERALEASM 354

GO:0019166 "trans-2-enoyl-CoA reductase (NADPH) activity" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q7YS70 MECR "Trans-2-enoyl-CoA reductase, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
 Identities = 145/313 (46%), Positives = 193/313 (61%)

Query:    76 LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
             LVY  HG P +VV ++N  L +V    V VKML AP+NP+DIN IQG Y + P LPAV G
Sbjct:    46 LVYGHHGDPAKVVELKNLELAAVGGSHVHVKMLAAPINPSDINMIQGNYGLLPQLPAVGG 105

Query:   136 FXXXXXXXXXXXXXXXLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGIT 195
                             +  GD VIP    LGTWR    F  + L+ VP DI L   + + 
Sbjct:   106 NEGVGQVVAVGSGVTGVKPGDWVIPANPGLGTWRTEAVFGEEELITVPSDIPLQSAATLG 165

Query:   196 SNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK 255
              NPCTAYRML D+  L P D +IQN +NS  GQ VIQIA   GL+TIN++R+  D+ KL 
Sbjct:   166 VNPCTAYRMLVDFERLRPRDSIIQNASNSGVGQAVIQIAAARGLRTINVLRDTPDLQKLT 225

Query:   256 SYLKSLGADYVFTEEELRNISRDA---SIPKPKLALNCVGGNSATNLLRTLVSKGVMVTY 312
               LK+LGA++V TEEELR     +    +P+P+LALNCVGG S+T LLR L   G MVTY
Sbjct:   226 DTLKNLGANHVVTEEELRKPEMKSFFKDVPQPRLALNCVGGKSSTELLRHLAPGGTMVTY 285

Query:   313 GGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPA 372
             GGM+++PV    S  IFKD+ LRG W+++W+K++    + K ++  L +++R G+L APA
Sbjct:   286 GGMAKQPVIASVSQLIFKDLKLRGFWLSQWKKDHSPD-QFKELILTLCDLIRRGQLTAPA 344

Query:   373 HKFVTLKNFQEAL 385
                V L+++  AL
Sbjct:   345 CSEVPLQDYLCAL 357

GO:0019166 "trans-2-enoyl-CoA reductase (NADPH) activity" evidence=IDA

GO:0006631 "fatty acid metabolic process" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISS

GO:0006633 "fatty acid biosynthetic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

WB|WBGene00012375 mecr-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 140/311 (45%), Positives = 184/311 (59%)

Query:    59 ISLLDTSARGFSYLANKLVYNQHGTPLRVVTVENETL-NSVQKHEVVVKMLVAPVNPADI 117
             +SL     R  S    +LVY  +  P   + ++  T+ +     +V+V+ + AP+NPAD+
Sbjct:     5 LSLRSALQRAAS--TRQLVYEGYRNPPEAIQLKTVTIADKPSADQVLVQWIAAPINPADL 62

Query:   118 NTIQGVYPIKPTLPAVPGFXXXXXXXXXXXXXXXLAVGDHVIPDTQHLGTWRNYGKFNHD 177
             N IQGVYP+KP LPAV G                + VGDHVIPD   LGTWR  G    +
Sbjct:    63 NQIQGVYPVKPALPAVGGNEGFGKVISVGSNVSSIKVGDHVIPDRSGLGTWRELGLHQEN 122

Query:   178 VLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHW 237
              L  +   +++   +    NP TAYRMLKD+  L  GD V QNGANSA G++VIQI R  
Sbjct:   123 DLFPIDNTLSMEYAATFQVNPPTAYRMLKDFIDLKKGDTVAQNGANSAVGKHVIQICRIL 182

Query:   238 GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSAT 297
             G+KT+N+VR+RD++++L   LK LGAD V T+EEL   SR    P  KLALNCVGG S+ 
Sbjct:   183 GIKTVNVVRSRDNLEELVKELKDLGADEVITQEEL--YSRKKKFPGVKLALNCVGGRSSL 240

Query:   298 NLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMN 357
              L   L   G MVTYGGMS++PV  PT   IFKDI+LRG WM+RW    K   +R  M  
Sbjct:   241 FLASLLDHGGCMVTYGGMSKQPVDCPTGPLIFKDISLRGFWMSRWYDIQKSPEKRHEMYQ 300

Query:   358 ELTEMMRTGKL 368
             EL   M++G++
Sbjct:   301 ELAGWMKSGEI 311

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0008340 "determination of adult lifespan" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6GQN8	MECR_DANRE	1, ., 3, ., 1, ., 3, 8	0.4968	0.7753	0.8328	yes	N/A
Q6CIR6	ETR1_KLULA	1, ., 3, ., 1, ., 3, 8	0.3374	0.7456	0.7905	yes	N/A
Q9Z311	MECR_RAT	1, ., 3, ., 1, ., 3, 8	0.5297	0.7679	0.8337	yes	N/A
Q6BV30	ETR2_DEBHA	1, ., 3, ., 1, ., 3, 8	0.3867	0.6888	0.7209	yes	N/A
Q6CBE4	ETR1_YARLI	1, ., 3, ., 1, ., 3, 8	0.3919	0.7506	0.8085	yes	N/A
O45903	MECR1_CAEEL	1, ., 3, ., 1, ., 3, 8	0.4949	0.7209	0.8488	yes	N/A
Q9V6U9	MECR_DROME	1, ., 3, ., 1, ., 3, 8	0.5014	0.8320	0.9439	yes	N/A
Q9BV79	MECR_HUMAN	1, ., 3, ., 1, ., 3, 8	0.5172	0.7679	0.8337	yes	N/A
P38071	ETR1_YEAST	1, ., 3, ., 1, ., 3, 8	0.3284	0.7703	0.8210	yes	N/A
Q7YS70	MECR_BOVIN	1, ., 3, ., 1, ., 3, 8	0.4952	0.7629	0.8284	yes	N/A
Q757U3	ETR1_ASHGO	1, ., 3, ., 1, ., 3, 8	0.3314	0.7950	0.8563	yes	N/A
Q54YT4	MECR_DICDI	1, ., 3, ., 1, ., 3, 8	0.4259	0.7851	0.9085	yes	N/A
Q10488	ETR1_SCHPO	1, ., 3, ., 1, ., 3, 8	0.3521	0.8370	0.9112	yes	N/A
Q9DCS3	MECR_MOUSE	1, ., 3, ., 1, ., 3, 8	0.5235	0.7679	0.8337	yes	N/A
Q28GQ2	MECR_XENTR	1, ., 3, ., 1, ., 3, 8	0.4787	0.8	0.9257	yes	N/A
Q8LCU7	MECR_ARATH	1, ., 3, ., 1, ., 3, 8	0.4369	0.7901	0.8533	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.3.1	0.921
3rd Layer	1.3.1.38	0.914

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	405
cd08290	341	cd08290, ETR, 2-enoyl thioester reductase (ETR)	1e-159
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	4e-99
cd08292	324	cd08292, ETR_like_2, 2-enoyl thioester reductase (	1e-60
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	3e-60
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	3e-44
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	1e-40
cd08291	324	cd08291, ETR_like_1, 2-enoyl thioester reductase (	3e-38
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	7e-37
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	5e-36
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	2e-31
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	8e-31
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	2e-30
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	8e-29
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	1e-28
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	2e-27
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	8e-25
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	8e-25
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	4e-24
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	3e-23
cd08275	337	cd08275, MDR3, Medium chain dehydrogenases/reducta	4e-23
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	7e-23
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	1e-22
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	6e-22
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	7e-21
cd08250	329	cd08250, Mgc45594_like, Mgc45594 gene product and	9e-21
smart00829	287	smart00829, PKS_ER, Enoylreductase	1e-20
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	1e-20
TIGR02824	325	TIGR02824, quinone_pig3, putative NAD(P)H quinone	4e-20
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	1e-19
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	3e-19
cd05195	293	cd05195, enoyl_red, enoyl reductase of polyketide	4e-19
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	3e-17
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	3e-17
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	1e-16
cd08251	303	cd08251, polyketide_synthase, polyketide synthase	2e-16
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	5e-16
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	9e-16
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	3e-15
cd05288	329	cd05288, PGDH, Prostaglandin dehydrogenases	3e-15
pfam08240	108	pfam08240, ADH_N, Alcohol dehydrogenase GroES-like	5e-15
cd08247	352	cd08247, AST1_like, AST1 is a cytoplasmic protein	5e-15
cd08248	350	cd08248, RTN4I1, Human Reticulon 4 Interacting Pro	1e-14
cd08274	350	cd08274, MDR9, Medium chain dehydrogenases/reducta	8e-14
cd05280	325	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putativ	2e-13
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	6e-13
cd08252	336	cd08252, AL_MDR, Arginate lyase and other MDR fami	1e-12
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	2e-12
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	6e-12
cd08289	326	cd08289, MDR_yhfp_like, Yhfp putative quinone oxid	8e-12
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	1e-11
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	1e-11
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	2e-11
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	2e-11
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	2e-11
cd08244	324	cd08244, MDR_enoyl_red, Possible enoyl reductase	2e-11
cd08294	329	cd08294, leukotriene_B4_DH_like, 13-PGR is a bifun	5e-11
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	1e-10
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	1e-10
cd08270	305	cd08270, MDR4, Medium chain dehydrogenases/reducta	1e-10
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	1e-10
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	2e-10
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	4e-10
cd08246	393	cd08246, crotonyl_coA_red, crotonyl-CoA reductase	4e-10
TIGR01751	398	TIGR01751, crot-CoA-red, crotonyl-CoA reductase	8e-10
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	1e-09
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	1e-09
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	3e-09
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	5e-09
TIGR03989	369	TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa	5e-09
TIGR02825	325	TIGR02825, B4_12hDH, leukotriene B4 12-hydroxydehy	6e-09
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	7e-09
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	1e-08
TIGR02818	368	TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat	1e-08
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	1e-08
COG2130	340	COG2130, COG2130, Putative NADP-dependent oxidored	2e-08
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	2e-08
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	3e-08
TIGR02823	323	TIGR02823, oxido_YhdH, putative quinone oxidoreduc	4e-08
PRK10754	327	PRK10754, PRK10754, quinone oxidoreductase, NADPH-	1e-07
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	1e-07
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	2e-07
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	2e-07
cd08299	373	cd08299, alcohol_DH_class_I_II_IV, class I, II, IV	4e-07
PLN02514	357	PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase	8e-07
cd08243	320	cd08243, quinone_oxidoreductase_like_1, Quinone ox	2e-06
TIGR02817	336	TIGR02817, adh_fam_1, zinc-binding alcohol dehydro	2e-06
cd08286	345	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase	3e-06
cd05281	341	cd05281, TDH, Threonine dehydrogenase	5e-06
pfam13602	129	pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenas	9e-06
PRK05396	341	PRK05396, tdh, L-threonine 3-dehydrogenase; Valida	2e-05
cd08288	324	cd08288, MDR_yhdh, Yhdh putative quinone oxidoredu	2e-05
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	6e-05
PRK09422	338	PRK09422, PRK09422, ethanol-active dehydrogenase/a	8e-05
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	1e-04
PLN02740	381	PLN02740, PLN02740, Alcohol dehydrogenase-like	1e-04
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	1e-04
cd08256	350	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD	1e-04
cd08287	345	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase	3e-04
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	4e-04
PLN03154	348	PLN03154, PLN03154, putative allyl alcohol dehydro	0.004
cd08301	369	cd08301, alcohol_DH_plants, Plant alcohol dehydrog	0.004

>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR)

 Score =  451 bits (1163), Expect = e-159
 Identities = 180/341 (52%), Positives = 226/341 (66%), Gaps = 16/341 (4%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKH-EVVVKMLVAPVNPADINTIQGVYPIKPT----L 130
           LVY +HG P  V+ +E+  +       EV+VKML AP+NPADIN IQGVYPIKP      
Sbjct: 4   LVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEP 63

Query: 131 PAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTE 190
           PAV G EGVGEVV+VGS V SL  GD VIP    LGTWR +     D L+KVP D+   +
Sbjct: 64  PAVGGNEGVGEVVKVGSGVKSLKPGDWVIPLRPGLGTWRTHAVVPADDLIKVPNDVDPEQ 123

Query: 191 ISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD 250
            + ++ NPCTAYR+L+D+  L PGD VIQNGANSA GQ VIQ+A+  G+KTIN+VR+R D
Sbjct: 124 AATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPD 183

Query: 251 IDKLKSYLKSLGADYVFTEEEL-----RNISRDASIPKPKLALNCVGGNSATNLLRTLVS 305
           +++LK  LK+LGAD+V TEEEL       + + A   +PKLALNCVGG SAT L R L  
Sbjct: 184 LEELKERLKALGADHVLTEEELRSLLATELLKSAPGGRPKLALNCVGGKSATELARLLSP 243

Query: 306 KGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRT 365
            G MVTYGGMS +PV +PTS  IFKDITLRG W+TRW  +     E++ M+ EL E++R 
Sbjct: 244 GGTMVTYGGMSGQPVTVPTSLLIFKDITLRGFWLTRW-LKRANPEEKEDMLEELAELIRE 302

Query: 366 GKLAAPAHKFVT---LKNFQEALMNTMSIQGKSGVKYYIDF 403
           GKL AP  + VT   L+ F++AL N +   G  G K  +  
Sbjct: 303 GKLKAPPVEKVTDDPLEEFKDALANALK--GGGGGKQVLVM 341

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score =  297 bits (763), Expect = 4e-99
 Identities = 135/325 (41%), Positives = 183/325 (56%), Gaps = 11/325 (3%)

Query: 76  LVYNQHGTPLR-VVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVP 134
           +VY Q G PL  V+ + +  +      EV+V+ML AP+NP+D+ TI G Y  +P LPAVP
Sbjct: 1   VVYTQFGEPLPLVLELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVP 60

Query: 135 GFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGI 194
           G EGVG VVEVGS VS L VG  V+P     GTW+ Y     D L+ VP  I+  + + +
Sbjct: 61  GNEGVGVVVEVGSGVSGLLVGQRVLP-LGGEGTWQEYVVAPADDLIPVPDSISDEQAAML 119

Query: 195 TSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKL 254
             NP TA+ ML +Y  L PGD VIQN ANSA G+ +IQ+A+  G KTIN+VR  + ++  
Sbjct: 120 YINPLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVE-- 177

Query: 255 KSYLKSLGADYVFTEEELRNISRDASIPKPK---LALNCVGGNSATNLLRTLVSKGVMVT 311
              LK+LGAD V          R           LAL+ VGG SAT L R+L   G +V 
Sbjct: 178 --ELKALGADEVIDSSPEDLAQRVKEATGGAGARLALDAVGGESATRLARSLRPGGTLVN 235

Query: 312 YGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAP 371
           YG +S EPV  P S FIFKDIT+RG W+ +W   +     ++    E+ +++  G L  P
Sbjct: 236 YGLLSGEPVPFPRSVFIFKDITVRGFWLRQW-LHSATKEAKQETFAEVIKLVEAGVLTTP 294

Query: 372 AHKFVTLKNFQEALMNTMSIQGKSG 396
                 L++F+EA+       G+ G
Sbjct: 295 VGAKFPLEDFEEAVAAAEQ-PGRGG 318

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|176252 cd08292, ETR_like_2, 2-enoyl thioester reductase (ETR) like proteins, child 2

 Score =  199 bits (507), Expect = 1e-60
 Identities = 110/326 (33%), Positives = 162/326 (49%), Gaps = 17/326 (5%)

Query: 77  VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGF 136
           V+ Q G P  V+ +      +    EV+V+  ++P++  D+ TI+G Y  KP LPA+ G 
Sbjct: 5   VHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGS 64

Query: 137 EGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITS 196
           E VG V  VG  V  L VG  V     H GTW  Y     D L+ +P  I+    + + +
Sbjct: 65  EAVGVVDAVGEGVKGLQVGQRVAVAPVH-GTWAEYFVAPADGLVPLPDGISDEVAAQLIA 123

Query: 197 NPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKS 256
            P +A  ML D+  + PG  +IQN A  A G+ V  +A   G+  IN+VR    + +   
Sbjct: 124 MPLSAL-MLLDFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAE--- 179

Query: 257 YLKSLGADYVF-TE-----EELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMV 310
            L++LG   V  TE     +++R  +  A I    +AL+ VGG  A  LL  L   G +V
Sbjct: 180 -LRALGIGPVVSTEQPGWQDKVREAAGGAPI---SVALDSVGGKLAGELLSLLGEGGTLV 235

Query: 311 TYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA 370
           ++G MS EP+QI +   IFK  T+RG W  RW +E      RK M+ EL  +   G+L  
Sbjct: 236 SFGSMSGEPMQISSGDLIFKQATVRGFWGGRWSQEMSV-EYRKRMIAELLTLALKGQLLL 294

Query: 371 PAHKFVTLKNFQEALMNTMSIQGKSG 396
           P      L +  +A   +M   G++G
Sbjct: 295 PVEAVFDLGDAAKAAAASM-RPGRAG 319

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score =  197 bits (503), Expect = 3e-60
 Identities = 95/333 (28%), Positives = 146/333 (43%), Gaps = 23/333 (6%)

Query: 73  ANKLVYNQHGTP--LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTL 130
              +V  + G P  L+VV V           EV+V++  A VNP D+   QG+ P    L
Sbjct: 1   MKAVVVEEFGGPEVLKVVEVPEPEPG---PGEVLVRVKAAGVNPIDVLVRQGLAPPVRPL 57

Query: 131 PAVPGFEGVGEVVEVGSDVSSLAVGDHVI--PDTQHLGTWRNYGKFNHDVLMKVPKDIAL 188
           P +PG E  G VV VGS V+   VGD V         G +  Y     D L+ +P  ++ 
Sbjct: 58  PFIPGSEAAGVVVAVGSGVTGFKVGDRVAALGGVGRDGGYAEYVVVPADWLVPLPDGLSF 117

Query: 189 TEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR 248
            E + +     TA+  L D   L PG+ V+ +GA    G   IQ+A+  G   + +V + 
Sbjct: 118 EEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSS 177

Query: 249 DDIDKLKSYLKSLGADYVF--TEEELRNISRDASIPKP-KLALNCVGGNSATNLLRTLVS 305
           + ++     LK LGAD+V    EE+     R+ +  K   + L+ VGG++    L  L  
Sbjct: 178 EKLE----LLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVGGDTFAASLAALAP 233

Query: 306 KGVMVTYGGMS-REPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMR 364
            G +V+ G +S   PV +     + K +TLRG  +     E          + EL +++ 
Sbjct: 234 GGRLVSIGALSGGPPVPLNLLPLLGKRLTLRGVTLGSRDPE-----ALAEALAELFDLLA 288

Query: 365 TGKLAAPAHKFVTLKNFQEA---LMNTMSIQGK 394
           +GKL     +   L     A   L+      GK
Sbjct: 289 SGKLKPVIDRVYPLAEAPAAAAHLLLERRTTGK 321

Length = 326

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  154 bits (391), Expect = 3e-44
 Identities = 75/267 (28%), Positives = 113/267 (42%), Gaps = 30/267 (11%)

Query: 102 EVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPD 161
           EV+V++  A +   D++  +G YP  P LP + G EG G VVEVG  V+ + VGD V+  
Sbjct: 1   EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVL 60

Query: 162 TQ----------------------HLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPC 199
                                     G +  Y     D L+ +P  ++L E + +     
Sbjct: 61  PNLGCGTCELCRELCPGGGILGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLA 120

Query: 200 TAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK 259
           TAY  L+    L PGD V+  GA    G    Q+A+  G + I   R+ + ++      K
Sbjct: 121 TAYHALRRAGVLKPGDTVLVLGA-GGVGLLAAQLAKAAGARVIVTDRSDEKLEL----AK 175

Query: 260 SLGADYVF--TEEELRNISRDASIPKPKLALNCVGGNSATNL-LRTLVSKGVMVTYGGMS 316
            LGAD+V    EE+L    R        + ++ VGG       LR L   G +V  GG S
Sbjct: 176 ELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTS 235

Query: 317 REPVQIPTSAFIFKDITLRGHWMTRWQ 343
             P        +FK++T+ G      +
Sbjct: 236 GGPPLDDLRRLLFKELTIIGSTGGTRE 262

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score =  146 bits (370), Expect = 1e-40
 Identities = 86/315 (27%), Positives = 140/315 (44%), Gaps = 15/315 (4%)

Query: 76  LVYNQHGTP--LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAV 133
           +V  + G P  L +  V  E        EV +++  A VN  D+  IQG Y +KP LP V
Sbjct: 4   VVCKELGGPEDLVLEEVPPE---PGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFV 60

Query: 134 PGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISG 193
           PG E  G V  VG  V+   VGD V+  T   G +          +  +P  ++  E + 
Sbjct: 61  PGSEVAGVVEAVGEGVTGFKVGDRVVALTGQ-GGFAEEVVVPAAAVFPLPDGLSFEEAAA 119

Query: 194 ITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDK 253
           +     TAY  L     L PG+ V+  GA    G   +Q+A+  G + I    +    +K
Sbjct: 120 LPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSE---EK 176

Query: 254 LKSYLKSLGADYV--FTEEELRNISRDASIPK-PKLALNCVGGNSATNLLRTLVSKGVMV 310
           L    ++LGAD+V  + + +LR   +  +  +   +  + VGG+     LR+L   G ++
Sbjct: 177 LA-LARALGADHVIDYRDPDLRERVKALTGGRGVDVVYDPVGGDVFEASLRSLAWGGRLL 235

Query: 311 TYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA 370
             G  S E  QIP +  + K+I++ G +   + +   E       + EL +++  GK+  
Sbjct: 236 VIGFASGEIPQIPANLLLLKNISVVGVYWGAYARREPELLRA--NLAELFDLLAEGKIRP 293

Query: 371 PAHKFVTLKNFQEAL 385
                  L+   EAL
Sbjct: 294 HVSAVFPLEQAAEAL 308

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176251 cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1

 Score =  139 bits (353), Expect = 3e-38
 Identities = 80/302 (26%), Positives = 137/302 (45%), Gaps = 29/302 (9%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQK--HEVVVKMLVAPVNPADINTIQGVYPIKPTLPAV 133
           L+  ++G PL V  +        +    EV++K+  AP+NP+D+  ++G Y     LP  
Sbjct: 4   LLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVP 63

Query: 134 PGFEGVGEVVEVG-SDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEIS 192
           PGFEG G VV  G   ++   +G  V       GT+  Y   +    + +P  ++  + +
Sbjct: 64  PGFEGSGTVVAAGGGPLAQSLIGKRVAFLAGSYGTYAEYAVADAQQCLPLPDGVSFEQGA 123

Query: 193 GITSNPCTAYRML---KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD 249
               NP TA  ML   ++         V+   A SA G+ ++++ +  G+K INIVR ++
Sbjct: 124 SSFVNPLTALGMLETAREEG----AKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKE 179

Query: 250 DIDKLKSYLKSLGADYVFT------EEELRNISRDASIPKPKLALNCVGGNSATNLLRTL 303
            +D     LK +GA+YV         E+L+ +          +  + VGG     +L  +
Sbjct: 180 QVDL----LKKIGAEYVLNSSDPDFLEDLKELIAKL---NATIFFDAVGGGLTGQILLAM 232

Query: 304 VSKGVMVTYGGMSREPVQIPTSAF--IFKDITLRGHWMTRW-QKENKESAE--RKSMMNE 358
                +  YG +S +  + P      IFK+ ++ G W+T W QK   E  +  +K +  E
Sbjct: 233 PYGSTLYVYGYLSGKLDE-PIDPVDLIFKNKSIEGFWLTTWLQKLGPEVVKKLKKLVKTE 291

Query: 359 LT 360
           L 
Sbjct: 292 LK 293

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  136 bits (345), Expect = 7e-37
 Identities = 85/317 (26%), Positives = 134/317 (42%), Gaps = 19/317 (5%)

Query: 77  VYNQHGTP--LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVP 134
            ++Q G P  LR+  +           EV++++    +N AD    +G Y   P LPA  
Sbjct: 5   RFHQFGGPEVLRIEELPVPAP---GAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARL 61

Query: 135 GFEGVGEVVEVGSDVSSLAVGDHVI----PDTQHLGTWRNYGKFNHDVLMKVPKDIALTE 190
           G+E  G V  VG+ V+  AVGD V      D    GT+  Y       ++K+P  ++  E
Sbjct: 62  GYEAAGVVEAVGAGVTGFAVGDRVSVIPAADLGQYGTYAEYALVPAAAVVKLPDGLSFVE 121

Query: 191 ISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD 250
            + +     TAY  L +   L PGD V+   A+S+ G   IQIA   G   I   R  + 
Sbjct: 122 AAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEK 181

Query: 251 IDKLKSYLKSLGADYVFTEEELRNISRDASIPKPK---LALNCVGGNSATNLLRTLVSKG 307
               +  L +LGA +V   +E   ++    I   K   +  + VGG     L   L   G
Sbjct: 182 ----RDALLALGAAHVIVTDEEDLVAEVLRITGGKGVDVVFDPVGGPQFAKLADALAPGG 237

Query: 308 VMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGK 367
            +V YG +S EP   P  A + K +T RG+ +        +   R+  +  + + + +G 
Sbjct: 238 TLVVYGALSGEPTPFPLKAALKKSLTFRGYSLDEI---TLDPEARRRAIAFILDGLASGA 294

Query: 368 LAAPAHKFVTLKNFQEA 384
           L     +     +  EA
Sbjct: 295 LKPVVDRVFPFDDIVEA 311

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score =  133 bits (338), Expect = 5e-36
 Identities = 76/320 (23%), Positives = 126/320 (39%), Gaps = 38/320 (11%)

Query: 76  LVYNQHGTP--LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYP--IKPTLP 131
           +  +++G P  L +  V           EV+VK+  A VNP D+   +G+       TLP
Sbjct: 4   VRIHEYGGPEVLELADVPTPEPGP---GEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLP 60

Query: 132 AVPGFEGVGEVVEVGSDVSSLAVGDHVI--PDTQHLGTWRNYGKFNHDVLMKVPKDIALT 189
            +PG +  G VV VG  V+   VGD V         G +  Y     D L   P +++  
Sbjct: 61  LIPGHDVAGVVVAVGPGVTGFKVGDEVFGMTPFTRGGAYAEYVVVPADELALKPANLSFE 120

Query: 190 EISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD 249
           E + +     TA++ L +   L  G  V+ +GA    G   +Q+A+  G + I      +
Sbjct: 121 EAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAAN 180

Query: 250 DIDKLKSYLKSLGA----DYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVS 305
                  +L+SLGA    DY   + E                L+ VGG +    L  +  
Sbjct: 181 -----ADFLRSLGADEVIDYTKGDFERAAAPGGV-----DAVLDTVGGETLARSLALVKP 230

Query: 306 KGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRT 365
            G +V+           P +    K   +R  ++  + + + E       + EL E++  
Sbjct: 231 GGRLVS-------IAGPPPAEQAAKRRGVRAGFV--FVEPDGE------QLAELAELVEA 275

Query: 366 GKLAAPAHKFVTLKNFQEAL 385
           GKL     +   L++  EA 
Sbjct: 276 GKLRPVVDRVFPLEDAAEAH 295

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score =  121 bits (306), Expect = 2e-31
 Identities = 88/351 (25%), Positives = 133/351 (37%), Gaps = 75/351 (21%)

Query: 77  VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGF 136
           V  + G PL +  V           EV++K+    V   D++  +G +P+   LP +PG 
Sbjct: 8   VLKKFGQPLEIEEVPVPEP---GPGEVLIKVEACGVCHTDLHVAKGDWPVPK-LPLIPGH 63

Query: 137 EGVGEVVEVGSDVSSLAVGDHV---------------------------IPDTQHLGTWR 169
           E VG VVEVG  V+ L VGD V                           I      G + 
Sbjct: 64  EIVGTVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITGYTTDGGYA 123

Query: 170 NYGKFNHDVLMKVPKDIALTEISGITSNPC---TAYRMLKDYNSLSPGDVVIQNGANSAC 226
            Y       ++K+P+ + L E + +    C   T YR LK  N + PG  V   GA    
Sbjct: 124 EYVVVPARYVVKIPEGLDLAEAAPLL---CAGITTYRALKKAN-VKPGKWVAVVGA-GGL 178

Query: 227 GQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKP-- 284
           G   +Q A+  G + I I R+    +KL+   K LGAD+V         S D+   +   
Sbjct: 179 GHMAVQYAKAMGAEVIAITRSE---EKLE-LAKKLGADHVIN-------SSDSDALEAVK 227

Query: 285 ---KLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV-QIPTSAFIFKDITLRGHW-M 339
                 ++ VG  +    L+ L   G +V  G     P+  +P    I K+I++ G    
Sbjct: 228 EIADAIIDTVGPATLEPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVG 287

Query: 340 TRWQKENKESAERKSMMNELTEMMR---TGKLAAPAHKFVTLKNFQEALMN 387
           TR                +L E +     GK+     + + L    EA   
Sbjct: 288 TRA---------------DLEEALDFAAEGKIKPEILETIPLDEINEAYER 323

Length = 339

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score =  120 bits (302), Expect = 8e-31
 Identities = 87/346 (25%), Positives = 141/346 (40%), Gaps = 63/346 (18%)

Query: 76  LVYNQHGTP-LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVP 134
           LV+ + G   L+V  V++         EV++++ +A VNP D N I     +KP +P +P
Sbjct: 4   LVFEKSGIENLKVEDVKDPKPGP---GEVLIRVKMAGVNPVDYNVIN-AVKVKP-MPHIP 58

Query: 135 GFEGVGEVVEVGSDVSSLAVGDHV--------------IPDTQHL------------GTW 168
           G E  G V EVG  V  +  GD V              +   + L            G +
Sbjct: 59  GAEFAGVVEEVGDHVKGVKKGDRVVVYNRVFDGTCDMCLSGNEMLCRNGGIIGVVSNGGY 118

Query: 169 RNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQ 228
             Y       L K+P  I+    + +     TAY  LK    L PG+ V+  GA+   G 
Sbjct: 119 AEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHALKTAG-LGPGETVVVFGASGNTGI 177

Query: 229 NVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT----EEELRNISRDASIPKP 284
             +Q+A+  G + I + R        K +LK  GAD V      EE+++ I++ A +   
Sbjct: 178 FAVQLAKMMGAEVIAVSR--------KDWLKEFGADEVVDYDEVEEKVKEITKMADV--- 226

Query: 285 KLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQK 344
              +N +G +     L  L   G +VT+G ++   V++  S    K I++ G        
Sbjct: 227 --VINSLGSSFWDLSLSVLGRGGRLVTFGTLTGGEVKLDLSDLYSKQISIIG-------- 276

Query: 345 ENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMS 390
               +   +  + EL ++     L     K   L+  +EAL    S
Sbjct: 277 ---STGGTRKELLELVKIA--KDLKVKVWKTFKLEEAKEALKELFS 317

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score =  118 bits (299), Expect = 2e-30
 Identities = 84/332 (25%), Positives = 131/332 (39%), Gaps = 48/332 (14%)

Query: 97  SVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGD 156
                EV+VK+    +NP D       Y   P+ PA+ G +  G VVEVGS V+   VGD
Sbjct: 23  KPGPDEVLVKVKAVALNPVDWKHQ--DYGFIPSYPAILGCDFAGTVVEVGSGVTRFKVGD 80

Query: 157 HVI-------PDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTA----YRML 205
            V        P+    G ++ Y   + D+  K+P +I+  E + +     TA    ++ L
Sbjct: 81  RVAGFVHGGNPNDPRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKL 140

Query: 206 K------DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIV--RNRDDIDKLKSY 257
                    +  S G  V+  G +S+ G   IQ+A+  G K I     +N D        
Sbjct: 141 GLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTASPKNFD-------L 193

Query: 258 LKSLGADYVF------TEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVT 311
           +KSLGAD VF        E++R  +      K + AL+C+    +  L    + +     
Sbjct: 194 VKSLGADAVFDYHDPDVVEDIRAATGG----KLRYALDCISTPESAQLCAEALGRSGGGK 249

Query: 312 YGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNE-LTEMMRTGKLAA 370
              +   P +      +     L          E  E  E   +  + L E++  GKL  
Sbjct: 250 LVSLLPVPEETEPRKGVKVKFVLGYTVF----GEIPEDREFGEVFWKYLPELLEEGKLKP 305

Query: 371 PAHKFV--TLKNFQEALMNTMSIQGK-SGVKY 399
              + V   L+  QE L   +  +GK SG K 
Sbjct: 306 HPVRVVEGGLEGVQEGL--DLLRKGKVSGEKL 335

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  114 bits (288), Expect = 8e-29
 Identities = 85/330 (25%), Positives = 135/330 (40%), Gaps = 37/330 (11%)

Query: 75  KLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVP 134
           ++V  + G P  V+ V    L      EVVVK+  + V+ AD+   +G+YP +P LP  P
Sbjct: 3   EVVVTRRGGP-EVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTP 61

Query: 135 GFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGI 194
           G++ VG V  +GS V+   VGD V   T+ +G    Y   +   L+ VP+ +   E   +
Sbjct: 62  GYDLVGRVDALGSGVTGFEVGDRVAALTR-VGGNAEYINLDAKYLVPVPEGVDAAEAVCL 120

Query: 195 TSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKL 254
             N  TAY+ML     +  G  V+ +GA+   GQ ++++A   G +       R+     
Sbjct: 121 VLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGAEVYGTASERNH---- 176

Query: 255 KSYLKSLGA---DY---VFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGV 308
            + L+ LGA   DY    +    L     D          + VGG S       L   G 
Sbjct: 177 -AALRELGATPIDYRTKDWLPAMLTPGGVDV-------VFDGVGGESYEESYAALAPGGT 228

Query: 309 MVTYG-------GMSREPVQIPTSAFIFKDITLRGHWMTR-------WQKENKESAERKS 354
           +V YG       G           A + K   L+     R       W+   ++    + 
Sbjct: 229 LVCYGGNSSLLQGRRSLAALGSLLARLAK---LKLLPTGRRATFYYVWRDRAEDPKLFRQ 285

Query: 355 MMNELTEMMRTGKLAAPAHKFVTLKNFQEA 384
            + EL +++  GK+     K + L    EA
Sbjct: 286 DLTELLDLLAKGKIRPKIAKRLPLSEVAEA 315

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  113 bits (286), Expect = 1e-28
 Identities = 88/327 (26%), Positives = 136/327 (41%), Gaps = 41/327 (12%)

Query: 77  VYNQHGTPLRVVTVENETLN-SVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTL----P 131
           VY ++G+P  ++ +E E    + +  EV+VK+  A VNP D    +G  P K  L    P
Sbjct: 2   VYTRYGSPEVLLLLEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRG--PPKLLLGRPFP 59

Query: 132 AVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHL--GTWRNYGKFNHDVLMKVPKDIALT 189
            +PG +  GEVV VGS V+   VGD V         G    Y       L K P+ ++  
Sbjct: 60  PIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPPKGGGALAEYVVAPESGLAKKPEGVSFE 119

Query: 190 EISGITSNPCTAYRMLKDYNSLSPGD-VVIQNGANSACGQNVIQIARHWGLKTINIV--R 246
           E + +     TA + L+D   + PG  V+I NGA+   G   +QIA+  G     +   R
Sbjct: 120 EAAALPVAGLTALQALRDAGKVKPGQRVLI-NGASGGVGTFAVQIAKALGAHVTGVCSTR 178

Query: 247 NRDDIDKLKSYLKSLGADYVF--TEEELRNISRDASIPKPKLALNCVGGN--SATNLLRT 302
           N +        ++SLGAD V   T E+   ++      K  +  + VG +  S       
Sbjct: 179 NAE-------LVRSLGADEVIDYTTEDFVALTAGG--EKYDVIFDAVGNSPFSLYRASLA 229

Query: 303 LVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQ----KENKESAERKSMMNE 358
           L   G  V+ GG     + +     +   +   G    R +    K N E       + +
Sbjct: 230 LKPGGRYVSVGGGPSGLLLVLLLLPLT--LGGGGR---RLKFFLAKPNAE------DLEQ 278

Query: 359 LTEMMRTGKLAAPAHKFVTLKNFQEAL 385
           L E++  GKL         L++  EA 
Sbjct: 279 LAELVEEGKLKPVIDSVYPLEDAPEAY 305

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score =  110 bits (277), Expect = 2e-27
 Identities = 77/319 (24%), Positives = 132/319 (41%), Gaps = 30/319 (9%)

Query: 77  VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGF 136
            Y++ G P  V+ + +  + +    EV+V++  + VNP D     G YP  P LP VPG 
Sbjct: 5   RYHEFGAP-DVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGS 63

Query: 137 EGVGEVVEVGSDVSSLAVGDHV-IPDTQHLGTWRNYGKF---NHDVLMKVPKDIALTEIS 192
           +G G V  VG  V  L VGD V + +           ++     D L+ +P  ++  + +
Sbjct: 64  DGAGVVEAVGEGVDGLKVGDRVWLTNLGWGRRQGTAAEYVVVPADQLVPLPDGVSFEQGA 123

Query: 193 GITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDID 252
            +     TAYR L        G+ V+ +G + A G   +Q+AR  G + I    + +  +
Sbjct: 124 ALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASSAEGAE 183

Query: 253 KLKSYLKSLGADYVF--TEEELRNISRDASIPK-PKLALNCVGGNSATNLLRTLVSKGVM 309
                ++  GAD VF    E+L +    A+  +   + +  +   +    L  L   G +
Sbjct: 184 L----VRQAGADAVFNYRAEDLADRILAATAGQGVDVIIEVLANVNLAKDLDVLAPGGRI 239

Query: 310 VTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL- 368
           V YG        IP +  + K+ ++RG  +     E + +A        +   +  G L 
Sbjct: 240 VVYGSGGLRGT-IPINPLMAKEASIRGVLLYTATPEERAAAAE-----AIAAGLADGALR 293

Query: 369 -----------AAPAHKFV 376
                      AA AH+ V
Sbjct: 294 PVIAREYPLEEAAAAHEAV 312

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score =  103 bits (260), Expect = 8e-25
 Identities = 79/341 (23%), Positives = 130/341 (38%), Gaps = 49/341 (14%)

Query: 76  LVYNQHGTP--LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAV 133
           +V   HG P  L    +           EV+V++  A +N  D+   +G+  IK  LP +
Sbjct: 4   VVIRGHGGPEVLEYGDLPEPEPG---PDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHI 60

Query: 134 PGFEGVGEVVEVGSDVSSLAVGDHV--------------------------IPDTQHLGT 167
            G +G G V  VG  V+++  G  V                          I      G 
Sbjct: 61  LGSDGAGVVEAVGPGVTNVKPGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGEHVDGG 120

Query: 168 WRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACG 227
           +  Y       L+ +P +++  E +       TA+ ML     L PG+ V+ +GA S  G
Sbjct: 121 YAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVG 180

Query: 228 QNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEEELRNISRD-ASIPKP 284
              IQIA+ +G   I    + D +++     K LGADYV    +E+     R+       
Sbjct: 181 SAAIQIAKLFGATVIATAGSEDKLER----AKELGADYVIDYRKEDFVREVRELTGKRGV 236

Query: 285 KLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQK 344
            + +  VG  +    L++L   G +VT G  +     I      ++ +++ G  M     
Sbjct: 237 DVVVEHVGAATWEKSLKSLARGGRLVTCGATTGYEAPIDLRHVFWRQLSILGSTMGTK-- 294

Query: 345 ENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEAL 385
                AE    ++E   ++  GKL         L+   EA 
Sbjct: 295 -----AE----LDEALRLVFRGKLKPVIDSVFPLEEAAEAH 326

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  103 bits (258), Expect = 8e-25
 Identities = 84/325 (25%), Positives = 130/325 (40%), Gaps = 34/325 (10%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
            V  + G  L++   E E        EV+VK+  A +NP D   I    P   + P VPG
Sbjct: 4   WVLPKPGAALQLTLEEIEIPGP-GAGEVLVKVHAAGLNPVDWKVIAWGPP-AWSYPHVPG 61

Query: 136 FEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKF------NHDVLMKVPKDIALT 189
            +G G VV VG+ V+   VGD V     +  +    G F      +   ++ +P  ++  
Sbjct: 62  VDGAGVVVAVGAKVTGWKVGDRVA----YHASLARGGSFAEYTVVDARAVLPLPDSLSFE 117

Query: 190 EISGITSNPC---TAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIV- 245
           E + +   PC   TAY+ L     +  G  ++  G     G   +Q+A+  GL+ I    
Sbjct: 118 EAAAL---PCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGLRVITTCS 174

Query: 246 -RNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPK---LALNCVGGNSATNLLR 301
            RN +       Y+KSLGAD+V    +     R   I   +     L+ VGG +A  L  
Sbjct: 175 KRNFE-------YVKSLGADHVIDYNDEDVCERIKEITGGRGVDAVLDTVGGETAAALAP 227

Query: 302 TLVSKGVMVTYGGMSREPVQIP-TSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELT 360
           TL   G +V   G        P T A    ++ L          +     + +    EL 
Sbjct: 228 TLAFNGHLVCIQGRPDASPDPPFTRALSVHEVALGAAHD---HGDPAAWQDLRYAGEELL 284

Query: 361 EMMRTGKLAAPAHKFVTLKNFQEAL 385
           E++  GKL     + +  +   EAL
Sbjct: 285 ELLAAGKLEPLVIEVLPFEQLPEAL 309

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score =  101 bits (254), Expect = 4e-24
 Identities = 76/321 (23%), Positives = 126/321 (39%), Gaps = 32/321 (9%)

Query: 76  LVYNQHGTP--LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAV 133
           +  ++ G P  L    V           EV+V+     VN  D     G+YP+   LP V
Sbjct: 3   VRIHKTGGPEVLEYEDVPVPEPGP---GEVLVRNTAIGVNFIDTYFRSGLYPLP--LPFV 57

Query: 134 PGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISG 193
            G EG G V  VG  V+   VGD V       G +  Y       L+K+P  I+    + 
Sbjct: 58  LGVEGAGVVEAVGPGVTGFKVGDRVAYAGP-PGAYAEYRVVPASRLVKLPDGISDETAAA 116

Query: 194 ITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDK 253
           +     TA+ +L++   + PGD V+ + A    G  + Q A+  G   I  V      +K
Sbjct: 117 LLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTV---SSEEK 173

Query: 254 LKSYLKSLGADYVF--TEEEL----RNISRDASIPKPKLALNCVGGNSATNLLRTLVSKG 307
            +   ++ GAD+V    +E+     R I+    +    +  + VG ++    L +L  +G
Sbjct: 174 AE-LARAAGADHVINYRDEDFVERVREITGGRGVD---VVYDGVGKDTFEGSLDSLRPRG 229

Query: 308 VMVTYGGMSREPVQIPTSAFIFKDITL-R---GHWMTRWQKENKESAERKSMMNELTEMM 363
            +V++G  S               + L R    H++           E  +   EL + +
Sbjct: 230 TLVSFGNASGPVPPFDLLRLSKGSLFLTRPSLFHYIAT-------REELLARAAELFDAV 282

Query: 364 RTGKLAAPAHKFVTLKNFQEA 384
            +GKL     K   L +  +A
Sbjct: 283 ASGKLKVEIGKRYPLADAAQA 303

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score = 98.9 bits (247), Expect = 3e-23
 Identities = 82/338 (24%), Positives = 137/338 (40%), Gaps = 54/338 (15%)

Query: 77  VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGF 136
           + ++   PL++  V +         EV++K+  A V   D+   +G +P +   P + G 
Sbjct: 5   ILHKPNKPLQIEEVPDPE---PGPGEVLIKVKAAGVCYRDLLFWKGFFP-RGKYPLILGH 60

Query: 137 EGVGEVVEVGSDVSSLAVGDHVIP----------------------------DTQHLGTW 168
           E VG V EVG  V     GD VI                             +    G +
Sbjct: 61  EIVGTVEEVGEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLCRNRAEYGEEVD--GGF 118

Query: 169 RNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQ 228
             Y K     L+K+P +++    +       TA   LK    +  GD V+  GA    G 
Sbjct: 119 AEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHALK-RAGVKKGDTVLVTGAGGGVGI 177

Query: 229 NVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDA-SIPKPKLA 287
           + IQ+A+  G + I + R+ +   KLK  LK LGADYV         S D   +    + 
Sbjct: 178 HAIQLAKALGARVIAVTRSPE---KLK-ILKELGADYVIDG---SKFSEDVKKLGGADVV 230

Query: 288 LNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENK 347
           +  VG  +    LR+L   G +V  G ++ +P  +     I K+I + G           
Sbjct: 231 IELVGSPTIEESLRSLNKGGRLVLIGNVTPDPAPLRPGLLILKEIRIIGS---------- 280

Query: 348 ESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEAL 385
             +  K+ + E  ++++ GK+     + V+L++  EAL
Sbjct: 281 -ISATKADVEEALKLVKEGKIKPVIDRVVSLEDINEAL 317

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|176236 cd08275, MDR3, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 98.8 bits (247), Expect = 4e-23
 Identities = 81/335 (24%), Positives = 125/335 (37%), Gaps = 48/335 (14%)

Query: 85  LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVE 144
           L  + VE E L      EV V++    +N AD+   QG+Y   P  P VPGFE  G V  
Sbjct: 11  LDKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEA 70

Query: 145 VGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRM 204
           VG  V    VGD V+  T+  G +        D +  +P  ++  E +    N  TAY  
Sbjct: 71  VGEGVKDFKVGDRVMGLTRF-GGYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYA 129

Query: 205 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD 264
           L +  +L PG  V+ + A    G    Q+ +   +  + +V       K ++ LK  G  
Sbjct: 130 LFELGNLRPGQSVLVHSAAGGVGLAAGQLCKT--VPNVTVVGTASA-SKHEA-LKENGVT 185

Query: 265 YVFTE------EELRNISRDASIPKP-KLALNCVGGNSATNLLRTLVSKGVMVTYGG--- 314
           +V         EE++ IS     P+   + L+ +GG         L   G +V YG    
Sbjct: 186 HVIDYRTQDYVEEVKKIS-----PEGVDIVLDALGGEDTRKSYDLLKPMGRLVVYGAANL 240

Query: 315 MSREPVQIPTSAFIFKDITLRGHWMTRWQK-------ENK------------ESAERKSM 355
           ++ E       A           W  R +        ENK            E      +
Sbjct: 241 VTGEKRSWFKLA---------KKWWNRPKVDPMKLISENKSVLGFNLGWLFEERELLTEV 291

Query: 356 MNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMS 390
           M++L ++   GK+          +   EA+    S
Sbjct: 292 MDKLLKLYEEGKIKPKIDSVFPFEEVGEAMRRLQS 326

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 98.0 bits (245), Expect = 7e-23
 Identities = 84/365 (23%), Positives = 130/365 (35%), Gaps = 67/365 (18%)

Query: 77  VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGF 136
           V      P  V  V           EV+VK+  + V   D++   G +P+KP LP + G 
Sbjct: 6   VEEFGEKPYEVKDVPVPE---PGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGH 62

Query: 137 EGVGEVVEVGSDVSSLAVGDHV-IP--------------------DTQHL------GTWR 169
           EG G VV VG  VS L VGD V +                       Q        GT+ 
Sbjct: 63  EGAGVVVAVGPGVSGLKVGDRVGVKWLYDACGKCEYCRTGDETLCPNQKNSGYTVDGTFA 122

Query: 170 NYGKFNHDVLMKVPKDIALTEISGITSNPC---TAYRMLKDYNSLSPGDVVIQNGANSAC 226
            Y   +   +  +P  ++  + + +    C   T Y+ LK    L PGD V+ +GA    
Sbjct: 123 EYAIADARYVTPIPDGLSFEQAAPLL---CAGVTVYKALKKAG-LKPGDWVVISGAGGGL 178

Query: 227 GQNVIQIARHWGLKTINIVRNRDDI--DKLKSYLKSLGADYVF---TEEELRNISRDASI 281
           G   +Q A+  GL+ I I     D+  +KL+   K LGAD        +++  +      
Sbjct: 179 GHLGVQYAKAMGLRVIAI-----DVGDEKLE-LAKELGADAFVDFKKSDDVEAVKELTGG 232

Query: 282 PKPKLALNCVGGNSATNL-LRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMT 340
                 +      +A    L  L   G +V  G      + +     + + IT+ G  + 
Sbjct: 233 GGAHAVVVTAVSAAAYEQALDYLRPGGTLVCVGLPPGGFIPLDPFDLVLRGITIVGSLVG 292

Query: 341 RWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEAL--MNTMSIQGKSGVK 398
             Q            + E  E    GK+         L++  E    M    I G    +
Sbjct: 293 TRQ-----------DLQEALEFAARGKVKPHIQVV-PLEDLNEVFEKMEEGKIAG----R 336

Query: 399 YYIDF 403
             +DF
Sbjct: 337 VVVDF 341

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score = 97.4 bits (243), Expect = 1e-22
 Identities = 87/343 (25%), Positives = 134/343 (39%), Gaps = 64/343 (18%)

Query: 77  VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGF 136
           +        R+  V +       K EVV+K+  A +   D+  +QG YP +   P + G 
Sbjct: 5   ILPGFKQGYRIEEVPDPKPG---KDEVVIKVNYAGLCYRDLLQLQGFYP-RMKYPVILGH 60

Query: 137 EGVGEVVEVGSDVSSLAVGDHV-----IPD--------------------TQHL-GTWRN 170
           E VG V EVG +V     GD V      PD                     + L G +  
Sbjct: 61  EVVGTVEEVGENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGEELDGFFAE 120

Query: 171 YGKFNHDVLMKVPKDIALTEISGITSNPC---TAYRMLKDYNSLSPGDVVIQNGANSACG 227
           Y K     L+KVP +++  E + I   PC     YR L+    +  G+ V+  GA    G
Sbjct: 121 YAKVKVTSLVKVPPNVS-DEGAVIV--PCVTGMVYRGLRRAG-VKKGETVLVTGAGGGVG 176

Query: 228 QNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE----EELRNISRDASIPK 283
            + IQ+A+  G K I +  +      +  Y     ADYV       EE++ I   A I  
Sbjct: 177 IHAIQVAKALGAKVIAVTSSESKAKIVSKY-----ADYVIVGSKFSEEVKKIG-GADI-- 228

Query: 284 PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV-QIPTSAFIFKDITLRGHWMTRW 342
               +  VG  +    LR+L   G ++  G +   P   +     I KDI + GH     
Sbjct: 229 ---VIETVGTPTLEESLRSLNMGGKIIQIGNVDPSPTYSLRLGYIILKDIEIIGH----- 280

Query: 343 QKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEAL 385
                 SA ++ +   L +++  GK+       V+L    +AL
Sbjct: 281 -----ISATKRDVEEAL-KLVAEGKIKPVIGAEVSLSEIDKAL 317

Length = 334

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 95.3 bits (238), Expect = 6e-22
 Identities = 72/291 (24%), Positives = 111/291 (38%), Gaps = 49/291 (16%)

Query: 80  QHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGV 139
             G  L  + +  E +      EV+V++    +N  D+  + G YP     P +P  +G 
Sbjct: 7   SGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGA 66

Query: 140 GEVVEVGSDVSSLAVGDHVIP--DTQHL------------------GTWRNYGKFNHDVL 179
           GEVV VG  V+   VGD V+P      L                  G    Y     + L
Sbjct: 67  GEVVAVGEGVTRFKVGDRVVPTFFPNWLDGPPTAEDEASALGGPIDGVLAEYVVLPEEGL 126

Query: 180 MKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGD-VVIQ-NGANSACGQNVIQIARHW 237
           ++ P  ++  E + +     TA+  L     L PGD V++Q  G  S      +Q A+  
Sbjct: 127 VRAPDHLSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLFA---LQFAKAA 183

Query: 238 GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNC------- 290
           G + I    + D  +KL+   K+LGAD+V       N        +  L L         
Sbjct: 184 GARVI-ATSSSD--EKLER-AKALGADHVI------NYRTTPDWGEEVLKLTGGRGVDHV 233

Query: 291 --VGGNSATNL---LRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRG 336
             VGG     L   ++ +   GV+   G +S     +     + K  TLRG
Sbjct: 234 VEVGG--PGTLAQSIKAVAPGGVISLIGFLSGFEAPVLLLPLLTKGATLRG 282

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score = 92.1 bits (230), Expect = 7e-21
 Identities = 72/271 (26%), Positives = 117/271 (43%), Gaps = 25/271 (9%)

Query: 77  VYNQHGTP--LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVP 134
           V  + G P  L +  V           EV++++  A VN AD+   QG+YP  P    + 
Sbjct: 5   VIKEPGGPEVLELGEVPKPAPGP---GEVLIRVAAAGVNRADLLQRQGLYPPPPGASDIL 61

Query: 135 GFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKF---NHDVLMKVPKDIALTEI 191
           G E  G VV VG  V+   VGD V       G    Y ++       L+ VP+ ++L E 
Sbjct: 62  GLEVAGVVVAVGPGVTGWKVGDRVCALLAGGG----YAEYVVVPAGQLLPVPEGLSLVEA 117

Query: 192 SGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDI 251
           + +     TA++ L     L  G+ V+ +G  S  G   IQ+A+  G + I    +    
Sbjct: 118 AALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGARVIATAGSE--- 174

Query: 252 DKLKSYLKSLGADYVFT------EEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVS 305
           +KL+   ++LGAD           EE++  +    +    + L+ VGG+     LR L  
Sbjct: 175 EKLE-ACRALGADVAINYRTEDFAEEVKEATGGRGVD---VILDMVGGDYLARNLRALAP 230

Query: 306 KGVMVTYGGMSREPVQIPTSAFIFKDITLRG 336
            G +V  G +     ++  +  + K +TL G
Sbjct: 231 DGRLVLIGLLGGAKAELDLAPLLRKRLTLTG 261

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members

 Score = 91.9 bits (229), Expect = 9e-21
 Identities = 79/285 (27%), Positives = 119/285 (41%), Gaps = 37/285 (12%)

Query: 101 HEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIP 160
            EV+VK     +N +DIN   G Y      P   GFEGVGEVV VG  V+   VGD V  
Sbjct: 31  GEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVTDFKVGDAVA- 89

Query: 161 DTQHLGTWRNYGKFNHDVLMKVP--KDIALT-EISGITSNPCTAYRMLKDYNSLSPGDVV 217
            T   G +  Y        + VP  K   L   +SG+     TA   L++   +  G+ V
Sbjct: 90  -TMSFGAFAEYQVVPARHAVPVPELKPEVLPLLVSGL-----TASIALEEVGEMKSGETV 143

Query: 218 IQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV--FTEEELRNI 275
           +   A    GQ  +Q+A+  G   I    +    D+   +LKSLG D    +  E+L  +
Sbjct: 144 LVTAAAGGTGQFAVQLAKLAGCHVIGTCSS----DEKAEFLKSLGCDRPINYKTEDLGEV 199

Query: 276 SRDASIPKPK---LALNCVGGNSATNLLRTLVSKGVMVTYGGMSR-------EPVQIPT- 324
            +      PK   +    VGG      +  L  KG ++  G +S         PV+  T 
Sbjct: 200 LKKEY---PKGVDVVYESVGGEMFDTCVDNLALKGRLIVIGFISGYQSGTGPSPVKGATL 256

Query: 325 -SAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL 368
               + K  ++RG ++  + K   +  +R      L ++ + GKL
Sbjct: 257 PPKLLAKSASVRGFFLPHYAKLIPQHLDR------LLQLYQRGKL 295

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|214840 smart00829, PKS_ER, Enoylreductase

 Score = 90.9 bits (227), Expect = 1e-20
 Identities = 53/179 (29%), Positives = 82/179 (45%), Gaps = 21/179 (11%)

Query: 105 VKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQH 164
           +++  A +N  D+    G+YP      AV G E  G V  VG  V+ LAVGD V+     
Sbjct: 1   IEVRAAGLNFRDVLIALGLYPG----EAVLGGECAGVVTRVGPGVTGLAVGDRVMGLAP- 55

Query: 165 LGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGD-VVIQNGAN 223
            G +      +  +++ +P   +  E + +     TAY  L D   L PG+ V+I   A 
Sbjct: 56  -GAFATRVVTDARLVVPIPDGWSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAA- 113

Query: 224 SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG--ADYVFTEEELRNISRDAS 280
              GQ  IQ+ARH G +      + +  D    +L++LG   D++F+       SRD S
Sbjct: 114 GGVGQAAIQLARHLGAEVFATAGSPEKRD----FLRALGIPDDHIFS-------SRDLS 161

Enoylreductase in Polyketide synthases. Length = 287

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score = 91.5 bits (228), Expect = 1e-20
 Identities = 87/329 (26%), Positives = 135/329 (41%), Gaps = 74/329 (22%)

Query: 82  GTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYP--IKPTLPAVPGFEGV 139
           G PLR+  V           +V+V++  A V  +D++ I GV+   +   LP   G E  
Sbjct: 10  GKPLRLEDVPVPEP---GPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENA 66

Query: 140 GEVVEVGSDVSSLAVGDHVI--P-------------DTQH--------LGTWRNYGKF-- 174
           G V EVGS V  L  GD V+  P             +  +        +GT   + ++  
Sbjct: 67  GWVEEVGSGVDGLKEGDPVVVHPPWGCGTCRYCRRGEENYCENARFPGIGTDGGFAEYLL 126

Query: 175 -NHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNS-LSPGDVVIQNGANSACGQNVIQ 232
                L+K+P+ +   E + +     TAY  +K     L PG  V+  G     G   +Q
Sbjct: 127 VPSRRLVKLPRGLDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGV-GGLGHIAVQ 185

Query: 233 IARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-----TEEELRNI--SRDASIPKPK 285
           I R     T+ I  +R + + LK   + LGAD+V        EE+R +   R A      
Sbjct: 186 ILRALTPATV-IAVDRSE-EALK-LAERLGADHVLNASDDVVEEVRELTGGRGADA---- 238

Query: 286 LALNCVGGNSATNLLRTLVSKG---VMVTYGGMSREPVQIPTSAFIFKDITLRG-HWMTR 341
             ++ VG +    L   L++KG   V+V YGG      ++PTS  +  +I++ G  W TR
Sbjct: 239 -VIDFVGSDETLALAAKLLAKGGRYVIVGYGG----HGRLPTSDLVPTEISVIGSLWGTR 293

Query: 342 WQKENKESAERKSMMNELTEMMRTGKLAA 370
                           EL E++    LA 
Sbjct: 294 ---------------AELVEVVA---LAE 304

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|234027 TIGR02824, quinone_pig3, putative NAD(P)H quinone oxidoreductase, PIG3 family

 Score = 90.0 bits (224), Expect = 4e-20
 Identities = 66/261 (25%), Positives = 111/261 (42%), Gaps = 9/261 (3%)

Query: 79  NQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEG 138
            + G P  +V VE   L   +  EV++++  A VN  D+    G YP  P    + G E 
Sbjct: 7   TEPGGPEVLVLVE-VPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEV 65

Query: 139 VGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNP 198
            GEVV VG  VS   VGD V       G +  Y       ++ VP+ ++L E + +    
Sbjct: 66  AGEVVAVGEGVSRWKVGDRVCALVAG-GGYAEYVAVPAGQVLPVPEGLSLVEAAALPETF 124

Query: 199 CTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL 258
            T +  L     L  G+ V+ +G  S  G   IQ+A+ +G +      + +         
Sbjct: 125 FTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCA----AC 180

Query: 259 KSLGADYV--FTEEELRNISRDASIPK-PKLALNCVGGNSATNLLRTLVSKGVMVTYGGM 315
           ++LGAD    + EE+   + +  +  K   + L+ VGG+     ++ L   G +V  G  
Sbjct: 181 EALGADIAINYREEDFVEVVKAETGGKGVDVILDIVGGSYLNRNIKALALDGRIVQIGFQ 240

Query: 316 SREPVQIPTSAFIFKDITLRG 336
                ++     + K +T+ G
Sbjct: 241 GGRKAELDLGPLLAKRLTITG 261

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized [Unknown function, Enzymes of unknown specificity]. Length = 325

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 88.8 bits (221), Expect = 1e-19
 Identities = 50/196 (25%), Positives = 82/196 (41%), Gaps = 16/196 (8%)

Query: 76  LVYNQHGTP--LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAV 133
           LV    G P    +  V           +V+V++  + VNP D    +G    +P LPA+
Sbjct: 4   LVLESFGGPEVFELREV---PRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAI 60

Query: 134 PGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHL----GTWRNYGKFNHDVLMKVPKDIALT 189
            G +  G V  VG  V+   VGD V      L    G+   Y   +  +L   P ++++ 
Sbjct: 61  LGCDVAGVVEAVGEGVTRFRVGDEVYGCAGGLGGLQGSLAEYAVVDARLLALKPANLSMR 120

Query: 190 EISGITSNPCTAYRMLKDYNSLSPGD-VVIQNGANSACGQNVIQIARHWGLKTINIVRNR 248
           E + +     TA+  L D  ++  G  V+I  GA    G   +Q+A+  G +      + 
Sbjct: 121 EAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGV-GHVAVQLAKAAGARVYATASSE 179

Query: 249 DDIDKLKSYLKSLGAD 264
                  ++ +SLGAD
Sbjct: 180 K-----AAFARSLGAD 190

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 87.8 bits (218), Expect = 3e-19
 Identities = 59/227 (25%), Positives = 95/227 (41%), Gaps = 15/227 (6%)

Query: 97  SVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGD 156
           + ++++V++K+  A VN AD    QG YP  P    + G E  G V +VGSDV     GD
Sbjct: 25  APKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRFKEGD 84

Query: 157 HVIPDTQHL---GTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSP 213
            V+     L   G +  Y   +   +M +P+     E + I     TA+++LK +  +  
Sbjct: 85  RVMA----LLPGGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKK 140

Query: 214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY----VFTE 269
           G  V+ +   S  G    Q+A  +G  TI    + + +D  K     +   Y     F  
Sbjct: 141 GQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKKLAAIILIRYPDEEGFAP 200

Query: 270 EELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMS 316
           +  +            L L+CVGG+  +     L   G  + YG M 
Sbjct: 201 KVKKLTGEKGV----NLVLDCVGGSYLSETAEVLAVDGKWIVYGFMG 243

Length = 334

>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase

 Score = 86.9 bits (216), Expect = 4e-19
 Identities = 73/308 (23%), Positives = 123/308 (39%), Gaps = 36/308 (11%)

Query: 101 HEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIP 160
            EV V++  A +N  D+    G+ P   T     G E  G V  VGS V+ L VGD V+ 
Sbjct: 1   DEVEVEVKAAGLNFRDVLVALGLLPGDET---PLGLECSGIVTRVGSGVTGLKVGDRVM- 56

Query: 161 DTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVV-IQ 219
                G +  + + +  +++K+P  ++  E + +     TAY  L D   L  G+ V I 
Sbjct: 57  -GLAPGAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIH 115

Query: 220 NGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG--ADYVFTEEELRNISR 277
             A    GQ  IQ+A+H G +    V + +     + +L+ LG   D++F+       SR
Sbjct: 116 AAA-GGVGQAAIQLAQHLGAEVFATVGSEEK----REFLRELGGPVDHIFS-------SR 163

Query: 278 DASIPK----------PKLALNCVGGNSATNLLRTLVSKGVMVTYG-GMSREPVQIPTSA 326
           D S               + LN + G       R L   G  V  G        ++    
Sbjct: 164 DLSFADGILRATGGRGVDVVLNSLSGELLRASWRCLAPFGRFVEIGKRDILSNSKLGMRP 223

Query: 327 FIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALM 386
           F+ ++++     + +  +E  E    + ++ E+ E++  G L  P    V     +    
Sbjct: 224 FL-RNVSFSSVDLDQLARERPELL--RELLREVLELLEAGVL-KPLPPTVVPSASEIDAF 279

Query: 387 NTMSIQGK 394
             M   GK
Sbjct: 280 RLMQ-SGK 286

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 293

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score = 82.3 bits (204), Expect = 3e-17
 Identities = 85/338 (25%), Positives = 129/338 (38%), Gaps = 78/338 (23%)

Query: 77  VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGF 136
           VY + G PL +  V +          VVV++    V  +D +  QG +    TLP VPG 
Sbjct: 5   VYEEFGEPLEIREVPDPE---PPPDGVVVEVEACGVCRSDWHGWQG-HDPDVTLPHVPGH 60

Query: 137 EGVGEVVEVGSDVSSLAVGDHVI---------------------PDTQHLGTWRNYGKF- 174
           E  G VVEVG DVS   VGD V                            G     G F 
Sbjct: 61  EFAGVVVEVGEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQPGFTHP-GSFA 119

Query: 175 ------NHDV-LMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACG 227
                   DV L+++P D+     +G+     TA+R L     + PG+ V  +G     G
Sbjct: 120 EYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGV-G 178

Query: 228 QNVIQIARHWGLKTINIVRNRDDI--DKLKSYLKSLGADYVF--TEEE-----LRNISR- 277
            + + IA   G + I +     DI  DKL    + LGA      +E E     +R+++  
Sbjct: 179 LSAVMIASALGARVIAV-----DIDDDKL-ELARELGAVATVNASEVEDVAAAVRDLTGG 232

Query: 278 --DASIPKPKLALNCVGGNSAT--NLLRTLVSKGVMVTYGGMSREP--VQIPTSAFIFKD 331
               S+     AL    G   T  N + +L  +G  V  G    E   V +P    + ++
Sbjct: 233 GAHVSVD----AL----GIPETCRNSVASLRKRGRHVQVGLTLGEEAGVALPMDRVVARE 284

Query: 332 ITLRG-HWMTRWQKENKESAERKSMMNELTEMMRTGKL 368
           + + G H M   + +             +  ++ +GKL
Sbjct: 285 LEIVGSHGMPAHRYD------------AMLALIASGKL 310

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score = 81.9 bits (203), Expect = 3e-17
 Identities = 76/351 (21%), Positives = 132/351 (37%), Gaps = 71/351 (20%)

Query: 81  HGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPI-----------KPT 129
            G PL  V ++          EV+VK+    V  +D++   G Y +              
Sbjct: 9   PGKPLEEVEIDTPKP---PGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVK 65

Query: 130 LPAVPGFEGVGEVVEVGSDVSSLAVGDHVI---------------------PDTQHLGTW 168
           LP V G E VGEVV VG D + + VGD V+                        + LG +
Sbjct: 66  LPLVLGHEIVGEVVAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRALGIF 125

Query: 169 RNYGKFNHDVLMKVPK---DIALTEISGITSNPC---TAYRMLKDYNSLSPGDVVIQNGA 222
           ++ G +   V++   +   D    + +   +  C   TAY  +K    L   + V+  GA
Sbjct: 126 QD-GGYAEYVIVPHSRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGA 184

Query: 223 NSACGQNVIQIARHWGLKTINIVRNRDDID--KLKSYLKSLGADYVFTEEELRNISRDAS 280
               G   + + +  G   I +V    DID  KL++     GAD V    +     R   
Sbjct: 185 -GGLGLMALALLKALGPANIIVV----DIDEAKLEAAKA-AGADVVVNGSDPDAAKRIIK 238

Query: 281 IP--KPKLALNCVGGNSATNLLRTLVSKG---VMV-TYGGMSREPVQIPTSAFIFKDITL 334
                    ++ V  ++  +L   +++KG   V+V  +GG       +P      + +T+
Sbjct: 239 AAGGGVDAVIDFVNNSATASLAFDILAKGGKLVLVGLFGG----EATLPLPLLPLRALTI 294

Query: 335 RGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEAL 385
           +G ++   ++           + EL  + + GKL         L +  +AL
Sbjct: 295 QGSYVGSLEE-----------LRELVALAKAGKLKPIPLTERPLSDVNDAL 334

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score = 80.0 bits (198), Expect = 1e-16
 Identities = 66/270 (24%), Positives = 105/270 (38%), Gaps = 43/270 (15%)

Query: 102 EVVVKMLVAPVNPADINTIQG-VYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIP 160
           EV+VK+  A V  +D++ + G V  +   LP   G E  G VVEVG+ V++  VGD V  
Sbjct: 28  EVLVKVKAAGVCHSDLHILDGGVPTLTK-LPLTLGHEIAGTVVEVGAGVTNFKVGDRVAV 86

Query: 161 --------------------DTQHL------GTWRNYGKFNHDVLMKVPKDIALTEISGI 194
                                 Q +      G +  Y       L+ VP  +   + +  
Sbjct: 87  PAVIPCGACALCRRGRGNLCLNQGMPGLGIDGGFAEYIVVPARALVPVPDGVPFAQAAVA 146

Query: 195 TSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKL 254
           T    T Y  +     + PG+ V+  G     G N +QIA+  G   I +     DI + 
Sbjct: 147 TDAVLTPYHAVVRAGEVKPGETVLVIGL-GGLGLNAVQIAKAMGAAVIAV-----DIKEE 200

Query: 255 KSYL-KSLGADYVFTEEELRNISRDASIPKPKL--ALNCVGGNSATNLLRTLVSKG---V 308
           K  L K LGAD V    +     + A+          + VG        +  V  G   V
Sbjct: 201 KLELAKELGADEVLNSLDDSPKDKKAAGLGGGFDVIFDFVGTQPTFEDAQKAVKPGGRIV 260

Query: 309 MVTYGGMSREPVQIPTSAFIFKDITLRGHW 338
           +V   G+ R+ + +  S  I +++ + G +
Sbjct: 261 VV---GLGRDKLTVDLSDLIARELRIIGSF 287

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176213 cd08251, polyketide_synthase, polyketide synthase

 Score = 78.6 bits (194), Expect = 2e-16
 Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 12/182 (6%)

Query: 102 EVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPD 161
           EV +++    +N  D+  ++G+YP  P  P  PGFE  G V  VG  V+ LAVGD VI  
Sbjct: 9   EVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAG 68

Query: 162 T-QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQN 220
           T + +G          D +++ P  ++  E   +     T          L+ G+ ++  
Sbjct: 69  TGESMGGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAFAR-AGLAKGEHILIQ 127

Query: 221 GANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT------EEELRN 274
            A    G   +Q+AR  G   I    + D  DKL+ YLK LG  +V        EEE+  
Sbjct: 128 TATGGTGLMAVQLARLKG-AEIYATASSD--DKLE-YLKQLGVPHVINYVEEDFEEEIMR 183

Query: 275 IS 276
           ++
Sbjct: 184 LT 185

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 303

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score = 78.1 bits (193), Expect = 5e-16
 Identities = 72/311 (23%), Positives = 111/311 (35%), Gaps = 54/311 (17%)

Query: 101 HEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHV-- 158
            EV++K+    V   D++  +G +      P VPG E VGEVVEVG+ V    VGD V  
Sbjct: 25  GEVLIKIEACGVCHTDLHAAEGDWG-GSKYPLVPGHEIVGEVVEVGAGVEGRKVGDRVGV 83

Query: 159 -------------------------IPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISG 193
                                           G +  Y   + +  + +P  + L + + 
Sbjct: 84  GWLVGSCGRCEYCRRGLENLCQKAVNTGYTTQGGYAEYMVADAEYTVLLPDGLPLAQAAP 143

Query: 194 ITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDK 253
           +     T Y  L+D     PG+ V   G     G   +Q AR  G +T+ I R     DK
Sbjct: 144 LLCAGITVYSALRDAG-PRPGERVAVLGI-GGLGHLAVQYARAMGFETVAITR---SPDK 198

Query: 254 LKSYLKSLGAD-YVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTY 312
            +   + LGAD  V +  EL   +         + L  V   +A       + +G  +  
Sbjct: 199 -RELARKLGADEVVDSGAELDEQAAAGGA---DVILVTVVSGAAAEAALGGLRRGGRIVL 254

Query: 313 GGMSREPVQIPTSA-FIFKDITLRGHWMTRWQKENKE----SAERK----------SMMN 357
            G+   P   P     I K  ++ G      + + +E    +AE K             N
Sbjct: 255 VGLPESPPFSPDIFPLIMKRQSIAG-STHGGRADLQEALDFAAEGKVKPMIETFPLDQAN 313

Query: 358 ELTEMMRTGKL 368
           E  E M  G +
Sbjct: 314 EAYERMEKGDV 324

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score = 77.6 bits (192), Expect = 9e-16
 Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 5/83 (6%)

Query: 77  VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGF 136
           V ++ G PL +  VE   L+     EV+V++  A +  +D++ + G  P    LPAV G 
Sbjct: 5   VLHEVGKPLEIEEVE---LDDPGPGEVLVRIAAAGLCHSDLHVVTGDLPA--PLPAVLGH 59

Query: 137 EGVGEVVEVGSDVSSLAVGDHVI 159
           EG G V EVG  V+ +  GDHV+
Sbjct: 60  EGAGVVEEVGPGVTGVKPGDHVV 82

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score = 75.9 bits (187), Expect = 3e-15
 Identities = 73/364 (20%), Positives = 127/364 (34%), Gaps = 66/364 (18%)

Query: 84  PLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVV 143
               V +E          +V++++    +  +D++  +G  P  P    + G E VGEVV
Sbjct: 9   GGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGHEFVGEVV 68

Query: 144 EVGSDVSSLAVGDHVIPD-------------------------------TQHLGTWRNYG 172
           EVG  V    VGD V+ +                                   G +  Y 
Sbjct: 69  EVG-VVRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYV 127

Query: 173 KFNHD-VLMKVPKDI-----ALTEISGITSNPCTAYRMLKDY-NSLSPGDVVIQNGANSA 225
           +   D  L K+P  I     ALTE         TAY    +       G VV+  GA   
Sbjct: 128 RVPADFNLAKLPDGIDEEAAALTEPLA------TAYHGHAERAAVRPGGTVVVV-GA-GP 179

Query: 226 CGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPK 285
            G   I +A+  G   + IV +R   ++L+   ++ GAD V    E    +    +   +
Sbjct: 180 IGLLAIALAKLLGASVV-IVVDRSP-ERLELAKEAGGADVVVNPSEDDAGAEILELTGGR 237

Query: 286 ---LALNCVGGNSATNLLRTLVSKGVMVTYGGMS-REPVQIPTSAFIFKDITLRGHWMTR 341
              + +  VG   A +     +  G  V   G+   E + +P    + K++TLRG     
Sbjct: 238 GADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLRP- 296

Query: 342 WQKENKESAERKSMMNELTEMMRTGKLAAPA--HKFVTLKNFQEALMNTMSIQGKSGVKY 399
                      +       +++ +GK+         + L +  EA     + + +  +K 
Sbjct: 297 ---------SGREDFERALDLLASGKIDPEKLITHRLPLDDAAEAYE-LFADRKEEAIKV 346

Query: 400 YIDF 403
            +  
Sbjct: 347 VLKP 350

Length = 350

>gnl|CDD|176190 cd05288, PGDH, Prostaglandin dehydrogenases

 Score = 75.6 bits (187), Expect = 3e-15
 Identities = 78/340 (22%), Positives = 118/340 (34%), Gaps = 73/340 (21%)

Query: 85  LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFE-----GV 139
             +V V    L   +  EV+V+ L   V+P     +      K   P V   E     GV
Sbjct: 20  FELVEVPLPEL---KDGEVLVRTLYLSVDPYMRGWMSDA---KSYSPPVQLGEPMRGGGV 73

Query: 140 GEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHD---VLMKVPKDIALTEIS---- 192
           GEVVE  S      VGD V         W+ Y     D    L K+   + L   +    
Sbjct: 74  GEVVESRSP--DFKVGDLVS----GFLGWQEY--AVVDGASGLRKLDPSLGLPLSAYLGV 125

Query: 193 -GITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDI 251
            G+T    TAY  L +     PG+ V+ + A  A G  V QIA+  G + + I       
Sbjct: 126 LGMTG--LTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIA---GSD 180

Query: 252 DKLKSYLKS-LGADYVFTEEELRNISRDASIPKPKLALNC----------VGG---NSAT 297
           +K + +L   LG D          I+         L              VGG   ++A 
Sbjct: 181 EKCR-WLVEELGFDAA--------INYKTPDLAEALKEAAPDGIDVYFDNVGGEILDAAL 231

Query: 298 NLLRT---LVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRG----HWMTRWQKENKESA 350
            LL     +   G +  Y        +   +  I K +T++G     +  R+ +      
Sbjct: 232 TLLNKGGRIALCGAISQYNATEPPGPKNLGN-IITKRLTMQGFIVSDYADRFPE------ 284

Query: 351 ERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMS 390
                + EL + +  GKL         L+N  EA +   +
Sbjct: 285 ----ALAELAKWLAEGKLKYREDVVEGLENAPEAFLGLFT 320

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain

 Score = 70.4 bits (173), Expect = 5e-15
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 101 HEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVI 159
            EV+V++  A +  +D++  +G  P    LP + G EG G V EVG  V+ L VGD V+
Sbjct: 2   GEVLVRVKAAGICGSDLHIYRGEPP-PVKLPLILGHEGAGIVEEVGPGVTGLKVGDRVV 59

This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108

>gnl|CDD|176209 cd08247, AST1_like, AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

 Score = 75.4 bits (186), Expect = 5e-15
 Identities = 80/359 (22%), Positives = 145/359 (40%), Gaps = 51/359 (14%)

Query: 74  NKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAV 133
             L +  + +PL + T++    N  + +E+VVK+  A +NP D+                
Sbjct: 2   KALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKG 61

Query: 134 PGFEGVGEVVEVGSDVSS-LAVGDHVIPDTQHL----GTWRNY----GKFNHDVLMKVPK 184
            G +  G +V+VGS+V+S   VGD V     H     GT   Y     K +   + + P+
Sbjct: 62  LGRDYSGVIVKVGSNVASEWKVGDEVCGIYPHPYGGQGTLSQYLLVDPKKDKKSITRKPE 121

Query: 185 DIALTEISGITSNPCTAYRMLKDYNS-LSPGDVVIQNGANSACGQNVIQIA-RHWGLKTI 242
           +I+L E +       TAY++L+D    L P   V+  G +++ G+  IQ+A  H+ + T+
Sbjct: 122 NISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTV 181

Query: 243 NIVRNRDDIDKLKSYLKSLGADY----------VFTEEELRNISRDASIPKPKLALNCVG 292
               +    +      K LGAD+             +  L N+       K  L L+CVG
Sbjct: 182 VGTCSSRSAE----LNKKLGADHFIDYDAHSGVKLLKPVLENVKGQG---KFDLILDCVG 234

Query: 293 GN----SATNLLRTLVSKGVMVT--------YGGMSREPVQIPTSAF--IFKDITLRG-H 337
           G        ++L+     G  VT        Y   +      P++    +F  + L   +
Sbjct: 235 GYDLFPHINSILKPKSKNGHYVTIVGDYKANYKKDTFNSWDNPSANARKLFGSLGLWSYN 294

Query: 338 WMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEAL--MNTMSIQGK 394
           +       N +       + +  E++  GK+  P       ++++EA   + +   +GK
Sbjct: 295 YQFFLLDPNADW------IEKCAELIADGKVKPPIDSVYPFEDYKEAFERLKSNRAKGK 347

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 352

>gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1

 Score = 74.2 bits (183), Expect = 1e-14
 Identities = 71/317 (22%), Positives = 113/317 (35%), Gaps = 43/317 (13%)

Query: 101 HEVVVKMLVAPVNPADINTIQG--------------VYPIKPTLPAVPGFEGVGEVVEVG 146
           ++V++K+  A VNP D+    G                      P   G +  G VV++G
Sbjct: 30  NQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRDCSGVVVDIG 89

Query: 147 SDVSSLAVGDHVI--PDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRM 204
           S V S  +GD V         GT   Y     + + K PK+++  E + +     TA+  
Sbjct: 90  SGVKSFEIGDEVWGAVPPWSQGTHAEYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSA 149

Query: 205 LKDYNSLSP----GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS 260
           L +   L+P    G  V+  G +   G   IQ+ + WG          D I      +KS
Sbjct: 150 LVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST-DAIPL----VKS 204

Query: 261 LGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVT--------- 311
           LGAD V                K  + L+ VGG++    L+ L   G  VT         
Sbjct: 205 LGADDVIDYNNEDFEEELTERGKFDVILDTVGGDTEKWALKLLKKGGTYVTLVSPLLKNT 264

Query: 312 -YGGMSREPVQIPTSAFIFKDITLRGHWMTRWQK--ENKESAERKSMMNELTEMMRTGKL 368
              G+      +  SA       ++        +      S    S ++EL +++  GK+
Sbjct: 265 DKLGL---VGGMLKSAVDLLKKNVKSLLKGSHYRWGFFSPSG---SALDELAKLVEDGKI 318

Query: 369 AAPAHKFVTLKNFQEAL 385
                K    +   EA 
Sbjct: 319 KPVIDKVFPFEEVPEAY 335

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 350

>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 71.6 bits (176), Expect = 8e-14
 Identities = 67/300 (22%), Positives = 121/300 (40%), Gaps = 56/300 (18%)

Query: 81  HGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVY---------------- 124
           HG   ++V  ++  + +    EV++++    VN  DINT +G Y                
Sbjct: 9   HGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEA 68

Query: 125 -----PIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQ-------------HLG 166
                 +    P + G + VG VV VG  V +  +G+ V+ D               ++G
Sbjct: 69  GWWGGTLS--FPRIQGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPADIDYIG 126

Query: 167 TWRN-----YGKFNHDVLMKVPKDIALTEISGITSNPC---TAYRMLKDYNSLSPGDVVI 218
           + R+     Y     +    V   ++  E++     PC   TA  ML +   +  G+ V+
Sbjct: 127 SERDGGFAEYTVVPAENAYPVNSPLSDVELATF---PCSYSTAENML-ERAGVGAGETVL 182

Query: 219 QNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRD 278
             GA+   G  ++Q+A+  G   I +       + +++    LGAD V   +    ++  
Sbjct: 183 VTGASGGVGSALVQLAKRRGAIVIAVA-GAAKEEAVRA----LGADTVILRDAP-LLADA 236

Query: 279 ASIPKPKL--ALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRG 336
            ++    +    + VGG    +LLR L   G  VT G ++   V++       KD+TL G
Sbjct: 237 KALGGEPVDVVADVVGGPLFPDLLRLLRPGGRYVTAGAIAGPVVELDLRTLYLKDLTLFG 296

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350

>gnl|CDD|176183 cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases

 Score = 70.3 bits (173), Expect = 2e-13
 Identities = 63/252 (25%), Positives = 106/252 (42%), Gaps = 34/252 (13%)

Query: 79  NQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEG 138
              G  L + T+  + L    + +V++++  + +N  D     G   +    P  PG + 
Sbjct: 9   QDGGVSLFLRTLPLDDLP---EGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDA 65

Query: 139 VGEVVEVGSDVSSLAVGDHVIPDTQHLG--TWRNYGKFNH---DVLMKVPKDIALTEISG 193
            G VV   SD      GD V+     LG  T   + ++     D ++ +P+ ++L E   
Sbjct: 66  AGTVVS--SDDPRFREGDEVLVTGYDLGMNTDGGFAEYVRVPADWVVPLPEGLSLREAMI 123

Query: 194 ITSNPCTA----YRMLKDYNSLSP--GDVVIQNGANSACGQNVIQIARHWGLKTINIVRN 247
           + +   TA    +R+    N  +P  G V++  GA    G   + I    G   + +   
Sbjct: 124 LGTAGFTAALSVHRLED--NGQTPEDGPVLV-TGATGGVGSIAVAILAKLGYTVVALTGK 180

Query: 248 RDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKL------ALNCVGGNSATNLLR 301
            +  D    YLKSLGA  V   E+L + S+     KP L      A++ VGG+   NLL+
Sbjct: 181 EEQAD----YLKSLGASEVLDREDLLDESK-----KPLLKARWAGAIDTVGGDVLANLLK 231

Query: 302 TLVSKGVMVTYG 313
                GV+ + G
Sbjct: 232 QTKYGGVVASCG 243

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score = 69.2 bits (170), Expect = 6e-13
 Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 5/81 (6%)

Query: 80  QHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGV 139
           + G PL +  V+   L+  +  EV+V++    V   D +T+ G  P     PAV G EG 
Sbjct: 10  EAGKPLEIEEVD---LDPPRAGEVLVRITATGVCHTDAHTLSGDDPEG--FPAVLGHEGA 64

Query: 140 GEVVEVGSDVSSLAVGDHVIP 160
           G V  VG  V+S+  GDHVI 
Sbjct: 65  GIVEAVGEGVTSVKPGDHVIL 85

Length = 366

>gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members

 Score = 68.3 bits (168), Expect = 1e-12
 Identities = 47/178 (26%), Positives = 78/178 (43%), Gaps = 21/178 (11%)

Query: 101 HEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVI- 159
            +++V++    VNP D     G  P  P  P + G++  G V  VGS+V+   VGD V  
Sbjct: 31  RDLLVRVEAVSVNPVDTKVRAGGAP-VPGQPKILGWDASGVVEAVGSEVTLFKVGDEVYY 89

Query: 160 ---PDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGI--TSNPCTAYRMLKDYNSLSPG 214
                    G+   Y   +  ++   PK ++  E + +  TS   TA+  L D   +S  
Sbjct: 90  AGDITRP--GSNAEYQLVDERIVGHKPKSLSFAEAAALPLTS--LTAWEALFDRLGISED 145

Query: 215 D------VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV 266
                  ++I  GA    G   IQ+A+     T+    +R +     +++K LGAD+V
Sbjct: 146 AENEGKTLLIIGGAGGV-GSIAIQLAKQLTGLTVIATASRPES---IAWVKELGADHV 199

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 336

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score = 67.5 bits (166), Expect = 2e-12
 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
            V  + G P  +  VE   L+  +  EV+V+++   +   D+    G  P    LPAV G
Sbjct: 6   AVVREPGGPFVLEDVE---LDDPRPDEVLVRIVATGICHTDLVVRDGGLPT--PLPAVLG 60

Query: 136 FEGVGEVVEVGSDVSSLAVGDHVI 159
            EG G V  VGS V+ L  GDHV+
Sbjct: 61  HEGAGVVEAVGSAVTGLKPGDHVV 84

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 66.1 bits (162), Expect = 6e-12
 Identities = 56/230 (24%), Positives = 88/230 (38%), Gaps = 47/230 (20%)

Query: 84  PLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVV 143
           PLR+  V           EV++K+    V   D++ ++G  P  P LP +PG E VG V 
Sbjct: 16  PLRLTEVPVPEPGP---GEVLIKVEACGVCRTDLHIVEGDLP-PPKLPLIPGHEIVGRVE 71

Query: 144 EVGSDVSSLAVGDHV----------------------IPDTQHLGTWRN-----YGKFNH 176
            VG  V+  +VGD V                        + +  G   +     Y   + 
Sbjct: 72  AVGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGYTVDGGYAEYMVADE 131

Query: 177 DVLMKVPKDIALTEI-----SGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVI 231
                +P+D    E      +GI       YR LK    L PG  +   G  ++     +
Sbjct: 132 RFAYPIPEDYDDEEAAPLLCAGI-----IGYRALKLAG-LKPGQRLGLYGFGAS-AHLAL 184

Query: 232 QIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASI 281
           QIAR+ G +     R+ +  +      + LGAD+    ++L     DA+I
Sbjct: 185 QIARYQGAEVFAFTRSGEHQE----LARELGADWAGDSDDLPPEPLDAAI 230

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|176249 cd08289, MDR_yhfp_like, Yhfp putative quinone oxidoreductases

 Score = 65.4 bits (160), Expect = 8e-12
 Identities = 75/274 (27%), Positives = 120/274 (43%), Gaps = 29/274 (10%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
           LV  +    + V +V+N TL+ + + +V++++  + VN  D         I    P +PG
Sbjct: 4   LVVEKDEDDVSV-SVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPG 62

Query: 136 FEGVGEVVEVGSDVSSLAVGDHVIPD-----TQHLGTWRNYGKFNHDVLMKVPKDIALTE 190
            +  G VVE  S+      GD VI         H G +  Y +   + ++ +PK + L E
Sbjct: 63  IDLAGTVVE--SNDPRFKPGDEVIVTSYDLGVSHHGGYSEYARVPAEWVVPLPKGLTLKE 120

Query: 191 ISGITSNPCTA----YRMLKDYNSLSP--GDVVIQNGANSACGQNVIQIARHWGLKTINI 244
              + +   TA    +R+ +  N L+P  G V++  GA    G   + I    G + +  
Sbjct: 121 AMILGTAGFTAALSIHRLEE--NGLTPEQGPVLVT-GATGGVGSLAVSILAKLGYEVVAS 177

Query: 245 VRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLA--LNCVGGNSATNLLRT 302
               D  D    YLK LGA  V   EEL+  S    + K + A  ++ VGG +   LL T
Sbjct: 178 TGKADAAD----YLKKLGAKEVIPREELQEESIKP-LEKQRWAGAVDPVGGKTLAYLLST 232

Query: 303 LVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRG 336
           L   G  V   G++    ++ T+ F F    LRG
Sbjct: 233 LQYGGS-VAVSGLT-GGGEVETTVFPF---ILRG 261

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 326

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score = 64.9 bits (159), Expect = 1e-11
 Identities = 73/279 (26%), Positives = 104/279 (37%), Gaps = 59/279 (21%)

Query: 102 EVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHV--- 158
           EV+VK+    +  +DI    G     P  P V G E  G V EVGS V  LAVGD V   
Sbjct: 26  EVLVKVKACGICGSDIPRYLGTGAYHP--PLVLGHEFSGTVEEVGSGVDDLAVGDRVAVN 83

Query: 159 --IP---------DTQHLGTWRNY------GKFNHDV------LMKVPKDI-----ALTE 190
             +P             L +  +Y      G F   V      L+K+P  +     A+ E
Sbjct: 84  PLLPCGKCEYCKKGEYSLCSNYDYIGSRRDGAFAEYVSVPARNLIKIPDHVDYEEAAMIE 143

Query: 191 ISGITSNPCT----AYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVR 246
                  P      A R+      ++ GD V+  GA    G   IQ  +  G K +  V 
Sbjct: 144 -------PAAVALHAVRLAG----ITLGDTVVVIGA-GTIGLLAIQWLKILGAKRVIAV- 190

Query: 247 NRDDIDKLK-SYLKSLGADYVF--TEEELRNISRDASIPKPKLALNCVGGNSATNLLRTL 303
              DID  K +  + LGAD      EE++  +          L +   G  +       L
Sbjct: 191 ---DIDDEKLAVARELGADDTINPKEEDVEKVRELTEGRGADLVIEAAGSPATIEQALAL 247

Query: 304 VSKGVMVTYGGMSREPVQIPTSAF---IFKDITLRGHWM 339
              G  V   G+    V +   AF   + K++T++G W 
Sbjct: 248 ARPGGKVVLVGIPYGDVTLSEEAFEKILRKELTIQGSWN 286

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 99  QKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHV 158
           + +EV +KML   V   DI  I+G        P + G EG G V  VG  V++L  GD V
Sbjct: 26  KANEVRIKMLATSVCHTDILAIEGFKA--TLFPVILGHEGAGIVESVGEGVTNLKPGDKV 83

Query: 159 IP 160
           IP
Sbjct: 84  IP 85

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 83/371 (22%), Positives = 141/371 (38%), Gaps = 87/371 (23%)

Query: 77  VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGF 136
           V      PL +  +        ++ E+++++    V  +D++ ++G  P  P  P V G 
Sbjct: 5   VLKGPNPPLTIEEIPVPR---PKEGEILIRVAACGVCHSDLHVLKGELPFPP--PFVLGH 59

Query: 137 EGVGEVVEVGSDVSS---LAVGDHVI------------------------------PDTQ 163
           E  GEVVEVG +V +   L+VGD V+                                T 
Sbjct: 60  EISGEVVEVGPNVENPYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTL 119

Query: 164 HLGTWRNYGKFNHDVLM------------------KVPKDIALTEISGITSNPCTAYRML 205
           + GT R +      V M                   +P+ +  TE + +     TAY  L
Sbjct: 120 YDGTTRLFRLDGGPVYMYSMGGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYGAL 179

Query: 206 KDYNSLSPGD---VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG 262
           K    + PG+   V+   G  S+     IQ+A+ +G   I  V  RD  +KL    K LG
Sbjct: 180 KHAADVRPGETVAVIGVGGVGSSA----IQLAKAFGASPIIAVDVRD--EKLAK-AKELG 232

Query: 263 ADYVF--TEEELRNISRDASIPK-PKLALNCVGGNSATNLLRTLVSKG---VMVTYGGMS 316
           A +     +E+     R+ +  +   + +  +G      L   +V  G   V+V      
Sbjct: 233 ATHTVNAAKEDAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVVGLAPGG 292

Query: 317 REPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL---AAPAH 373
               +IP +  + + I + G +  R +++          + EL  +  +GKL   A   H
Sbjct: 293 AT-AEIPITRLVRRGIKIIGSYGARPRQD----------LPELVGLAASGKLDPEALVTH 341

Query: 374 KFVTLKNFQEA 384
           K+  L+   EA
Sbjct: 342 KY-KLEEINEA 351

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 5/79 (6%)

Query: 82  GTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGE 141
           G PL +  +E   +   +  EV +K++   V   D++ I G  P    LP + G EG G 
Sbjct: 10  GKPLSIEEIE---VAPPKAGEVRIKVVATGVCHTDLHVIDGKLPTP--LPVILGHEGAGI 64

Query: 142 VVEVGSDVSSLAVGDHVIP 160
           V  +G  V++L  GD VIP
Sbjct: 65  VESIGPGVTTLKPGDKVIP 83

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 66/281 (23%), Positives = 110/281 (39%), Gaps = 51/281 (18%)

Query: 100 KHEVVVKMLVAPVNPADINTIQG-VYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHV 158
             EV++K+  A +  +D++  +G   P++   P V G E  G +VEVG DV    VGD V
Sbjct: 26  PGEVLIKVAAAGICGSDLHIYKGDYDPVET--PVVLGHEFSGTIVEVGPDVEGWKVGDRV 83

Query: 159 IPDTQHLGTWRNY----GKFNHD-----------------VLM------KVPKDIALTEI 191
           + +T      R      G +N                   VL+      ++P++++L   
Sbjct: 84  VSETTFSTCGRCPYCRRGDYNLCPHRKGIGTQADGGFAEYVLVPEESLHELPENLSLEA- 142

Query: 192 SGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDI 251
           + +T     A   + + + + PGD V+  G     G    Q+A+  G  T+ +V    D 
Sbjct: 143 AALTEPLAVAVHAVAERSGIRPGDTVVVFGP-GPIGLLAAQVAKLQG-ATVVVVGTEKDE 200

Query: 252 DKLKSYLKSLGADYVFTEEELRNISRDASIPK-------PKLALNCVGGNSATNLLRTLV 304
            +L    K LGAD V   EE       A +           + + C G   A      L+
Sbjct: 201 VRLD-VAKELGADAVNGGEEDL-----AELVNEITDGDGADVVIECSGAVPALEQALELL 254

Query: 305 SKG---VMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRW 342
            KG   V V   G     + +     I K++++ G   +  
Sbjct: 255 RKGGRIVQVGIFGPLAASIDVERI--IQKELSVIGSRSSTP 293

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|176206 cd08244, MDR_enoyl_red, Possible enoyl reductase

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 60/231 (25%), Positives = 91/231 (39%), Gaps = 15/231 (6%)

Query: 102 EVVVKMLVAPVNPADINTIQGV--YPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVI 159
           +V + +  A V+  D     G    P  P LP VPG E  G V  VG  V    +G  V+
Sbjct: 29  QVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDPAWLGRRVV 88

Query: 160 PDTQHLGTWRNYGKF---NHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDV 216
                      Y +    + D L  VP  + L     +  +  TA  +L D  +L+PGDV
Sbjct: 89  --AHTGRAGGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTALGLL-DLATLTPGDV 145

Query: 217 VIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV--FTEEELRN 274
           V+   A    G  ++Q+A+  G   +               +++LGAD    +T  +  +
Sbjct: 146 VLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTAL----VRALGADVAVDYTRPDWPD 201

Query: 275 ISRDA-SIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPT 324
             R+A       + L+ VGG      L  L   G  +TYG  S E   +  
Sbjct: 202 QVREALGGGGVTVVLDGVGGAIGRAALALLAPGGRFLTYGWASGEWTALDE 252

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176254 cd08294, leukotriene_B4_DH_like, 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

 Score = 63.1 bits (154), Expect = 5e-11
 Identities = 78/318 (24%), Positives = 124/318 (38%), Gaps = 53/318 (16%)

Query: 93  ETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL 152
           E L  ++  EV+ + L   V+P         Y  +           V +V+E  S  S  
Sbjct: 26  EELPPLKDGEVLCEALFLSVDP-----YMRPYSKRLNEGDTMIGTQVAKVIE--SKNSKF 78

Query: 153 AVGDHVIPDTQHLGTWRNYGKFN---HDVLMKVP----KDIALTEISGITSNP-CTAYRM 204
            VG  V+      G WR +   +      L K+P     D+  +   G+   P  TAY  
Sbjct: 79  PVGTIVV---ASFG-WRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFG 134

Query: 205 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD 264
           L +      G+ V+ NGA  A G  V QIA+  G K I    + D +    ++LK LG D
Sbjct: 135 LLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKV----AWLKELGFD 190

Query: 265 YVFT------EEELRNISRDASIPKPKLALNC----VGGNSATNLLRTLVSKGVMVTYGG 314
            VF       EE L+  + D         ++C    VGG  ++ +L  +   G +   G 
Sbjct: 191 AVFNYKTVSLEEALKEAAPD--------GIDCYFDNVGGEFSSTVLSHMNDFGRVAVCGS 242

Query: 315 MS--REPVQIPTSAF----IFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL 368
           +S   +             IFK + + G  + RWQ    E+      + +L + ++ GKL
Sbjct: 243 ISTYNDKEPKKGPYVQETIIFKQLKMEGFIVYRWQDRWPEA------LKQLLKWIKEGKL 296

Query: 369 AAPAHKFVTLKNFQEALM 386
               H     +N  +A +
Sbjct: 297 KYREHVTEGFENMPQAFI 314

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 58.9 bits (143), Expect = 1e-10
 Identities = 30/120 (25%), Positives = 51/120 (42%), Gaps = 13/120 (10%)

Query: 227 GQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT------EEELRNISRDAS 280
           G   +Q+A+  G   + I  +R + +KL+   K LGAD+V         E +R ++    
Sbjct: 3   GLAAVQLAKALGAARV-IAVDRSE-EKLE-LAKELGADHVINYRDEDFVERVRELTGGRG 59

Query: 281 IPKPKLALNCVGGNSATN-LLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWM 339
                + ++CVG  +     L  L   G +V  G     PV  P    + K++T+ G   
Sbjct: 60  ---VDVVIDCVGAPATLEQALELLRPGGRVVVVGLPGGAPVPFPLRDLLLKELTILGSLG 116

Length = 131

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 62.1 bits (152), Expect = 1e-10
 Identities = 59/287 (20%), Positives = 100/287 (34%), Gaps = 77/287 (26%)

Query: 101 HEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHV-- 158
            +V +K+    V  +D++T++  +      P VPG E VG VV VGS V+   VGD V  
Sbjct: 25  DDVDIKITYCGVCHSDLHTLRNEWG-PTKYPLVPGHEIVGIVVAVGSKVTKFKVGDRVGV 83

Query: 159 --------------------------------IPDTQHLGTWRNYGKFNHDVLMKVPKDI 186
                                              T   G + ++   +   + K+P+ +
Sbjct: 84  GCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHIVVDERFVFKIPEGL 143

Query: 187 ALTEIS-----GITSNPCTAYRMLKDYNSLSPGDVV-------IQNGANSACGQNVIQIA 234
                +     GI     T Y  LK    + PG  V       +        G   ++ A
Sbjct: 144 DSAAAAPLLCAGI-----TVYSPLKRNG-VGPGKRVGVVGIGGL--------GHLAVKFA 189

Query: 235 RHWGLKTINIVRN---RDDIDKLKSYLKSLGAD-YVFTEEELRNISRDASIPKPKLALNC 290
           +  G +     R+   ++D          LGAD ++ T++         S+    L ++ 
Sbjct: 190 KALGAEVTAFSRSPSKKEDA-------LKLGADEFIATKDPEAMKKAAGSL---DLIIDT 239

Query: 291 VGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRG 336
           V  +      L  L   G +V   G   EP+ +P    IF   ++ G
Sbjct: 240 VSASHDLDPYLSLLKPGGTLVLV-GAPEEPLPVPPFPLIFGRKSVAG 285

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176231 cd08270, MDR4, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 62/268 (23%), Positives = 102/268 (38%), Gaps = 25/268 (9%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPA--V 133
           LV +    PLR+   E         HE +V++    +N  ++             P   V
Sbjct: 4   LVVD-PDAPLRLRLGEVPDP-QPAPHEALVRVAAISLNRGELKFAA-------ERPDGAV 54

Query: 134 PGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISG 193
           PG++  G V    +D S  AVG  V+     +G W          L  +P  ++  + + 
Sbjct: 55  PGWDAAGVVERAAADGSGPAVGARVV-GLGAMGAWAELVAVPTGWLAVLPDGVSFAQAAT 113

Query: 194 ITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDK 253
           +     TA R L+    L  G  V+  GA+   G+  +Q+A   G   + +V +    + 
Sbjct: 114 LPVAGVTALRALRRGGPLL-GRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEG 172

Query: 254 LKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYG 313
           L+     LGA      E +   S  +  P   L ++ VGG      L  L   G +V+ G
Sbjct: 173 LRE----LGA-----AEVVVGGSELSGAPV-DLVVDSVGGPQLARALELLAPGGTVVSVG 222

Query: 314 GMSREPVQIPTSAFIFK--DITLRGHWM 339
             S EP     +AF+       L   ++
Sbjct: 223 SSSGEPAVFNPAAFVGGGGGRRLYTFFL 250

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 305

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 61.9 bits (151), Expect = 1e-10
 Identities = 70/305 (22%), Positives = 106/305 (34%), Gaps = 81/305 (26%)

Query: 82  GTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGE 141
           G PL +V  +   +      EV++K+    V  +D    +G  P   + P VPG E VG 
Sbjct: 10  GGPLELVERD---VPLPGPGEVLIKVEACGVCHSDAFVKEGAMP-GLSYPRVPGHEVVGR 65

Query: 142 VVEVGSDVSSLAVGDHV---------------------------IPDTQHLGTWRNYGKF 174
           +  VG  VS   VGD V                           +      G +  Y   
Sbjct: 66  IDAVGEGVSRWKVGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVTRDGGYAEYMLA 125

Query: 175 NHDVLMKVPKDIALTEI-----SGITSNPCTAYRMLKDYNSL-----SPGDVVIQNGANS 224
             + L ++P D+   E      +G+T+           +N+L      PGD+V   G   
Sbjct: 126 PAEALARIPDDLDAAEAAPLLCAGVTT-----------FNALRNSGAKPGDLVAVQGI-G 173

Query: 225 ACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YVFTEEELRNISRDASIPK 283
             G   +Q A   G +T+ I R  D         + LGA  Y+           D S   
Sbjct: 174 GLGHLAVQYAAKMGFRTVAISRGSD----KADLARKLGAHHYI-----------DTSKED 218

Query: 284 PKLALNCVGGNS-----ATN------LLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDI 332
              AL  +GG       A N      L+  L  +G ++   G + EPV +     I    
Sbjct: 219 VAEALQELGGAKLILATAPNAKAISALVGGLAPRGKLLIL-GAAGEPVAVSPLQLIMGRK 277

Query: 333 TLRGH 337
           ++ G 
Sbjct: 278 SIHGW 282

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score = 61.4 bits (150), Expect = 2e-10
 Identities = 72/273 (26%), Positives = 111/273 (40%), Gaps = 56/273 (20%)

Query: 102 EVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHV--I 159
           EV+V++    +  +D++   G  P   + P + G E  GEVVEVG  V+ L VGD V   
Sbjct: 26  EVLVRVKRVGICGSDLHIYHGRNPFA-SYPRILGHELSGEVVEVGEGVAGLKVGDRVVVD 84

Query: 160 PDTQHLGT---WRNYGKFN----HDVL-----------MKVP------------KDIALT 189
           P     G     R  G+ N      VL           + VP               AL 
Sbjct: 85  P-YISCGECYACRK-GRPNCCENLQVLGVHRDGGFAEYIVVPADALLVPEGLSLDQAALV 142

Query: 190 EISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD 249
           E   I ++     R       ++ GD V+  GA    G  VIQ+A+  G +   IV + D
Sbjct: 143 EPLAIGAH--AVRRA-----GVTAGDTVLVVGAGPI-GLGVIQVAKARGARV--IVVDID 192

Query: 250 DIDKLKSYLKSLGADYVF------TEEELRNISRDASIPKPKLALNCVGGNSATNLLRTL 303
           D ++L+ + + LGAD             LR ++         + ++  G  ++      L
Sbjct: 193 D-ERLE-FARELGADDTINVGDEDVAARLRELTDG---EGADVVIDATGNPASMEEAVEL 247

Query: 304 VSKGVMVTYGGMSREPVQIPTSAFIFKDITLRG 336
           V+ G  V   G+S+ PV  P   F  K++T+ G
Sbjct: 248 VAHGGRVVLVGLSKGPVTFPDPEFHKKELTILG 280

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score = 60.6 bits (148), Expect = 4e-10
 Identities = 66/253 (26%), Positives = 96/253 (37%), Gaps = 67/253 (26%)

Query: 131 PAVPGFEGVGEVVEVGSDVSSLAVGDHV-----IPDTQ---------HL----------- 165
           P V G E  G VV VGS V+ L VGD V     +P            +L           
Sbjct: 55  PMVLGHESAGTVVAVGSGVTHLKVGDRVAIEPGVPCRTCEFCKSGRYNLCPDMRFAATPP 114

Query: 166 --GTWRNYGKFNH--DVLMKVPKDIALTEIS-------GITSNPCT-AYRMLKDYNSLSP 213
             GT   Y   NH  D   K+P +++L E +       G+ +  C  A         + P
Sbjct: 115 VDGTLCRY--VNHPADFCHKLPDNVSLEEGALVEPLSVGVHA--CRRA--------GVRP 162

Query: 214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK-SYLKSLGADYVF----- 267
           GD V+  GA    G     +A+ +G   + +     DID  +  + K LGA +       
Sbjct: 163 GDTVLVFGA-GPIGLLTAAVAKAFGATKVVVT----DIDPSRLEFAKELGATHTVNVRTE 217

Query: 268 -TEEELRNISRDASIPKPKLALNCVGGNSATNL-LRTLVSKG--VMVTYGGMSREPVQIP 323
            T E    I+       P + + C G  S     +      G  V+V   GM +  V +P
Sbjct: 218 DTPESAEKIAELLGGKGPDVVIECTGAESCIQTAIYATRPGGTVVLV---GMGKPEVTLP 274

Query: 324 TSAFIFKDITLRG 336
            SA   ++I +RG
Sbjct: 275 LSAASLREIDIRG 287

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|176208 cd08246, crotonyl_coA_red, crotonyl-CoA reductase

 Score = 60.9 bits (148), Expect = 4e-10
 Identities = 56/223 (25%), Positives = 92/223 (41%), Gaps = 46/223 (20%)

Query: 81  HGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKP---------TLP 131
           +G P + + +E+  +  +   EV+V ++ A VN  ++    G  P+             P
Sbjct: 23  YGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALG-EPVSTFAARQRRGRDEP 81

Query: 132 -AVPGFEGVGEVVEVGSDVSSLAVGDHVI---------------------PDTQHLGTWR 169
             + G +  G V  VG  V +  VGD V+                     P  +  G   
Sbjct: 82  YHIGGSDASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRIWGYET 141

Query: 170 NYGKF-------NHDVLMKVPKDIALTEISGITSNPCTAYRMLKDY--NSLSPGDVVIQN 220
           NYG F          ++ K PK ++  E +       TAYRML  +  N++ PGD V+  
Sbjct: 142 NYGSFAQFALVQATQLMPK-PKHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIW 200

Query: 221 GANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA 263
           GA+   G   IQ+AR  G   + +V + +  +    Y ++LGA
Sbjct: 201 GASGGLGSMAIQLARAAGANPVAVVSSEEKAE----YCRALGA 239

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 393

>gnl|CDD|188164 TIGR01751, crot-CoA-red, crotonyl-CoA reductase

 Score = 59.8 bits (145), Expect = 8e-10
 Identities = 60/226 (26%), Positives = 91/226 (40%), Gaps = 43/226 (19%)

Query: 80  QHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQG--VYPI-------KPTL 130
           + G P + + +E   +  +   EV+V ++ A VN  ++    G  V          K  L
Sbjct: 17  RDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGKLDL 76

Query: 131 P-AVPGFEGVGEVVEVGSDVSSLAVGDHVI----------PDTQHLGT--------W--- 168
           P  + G +  G V  VG  V+   VGD V+          PD +            W   
Sbjct: 77  PFHIIGSDASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRDGDPMLSSEQRIWGYE 136

Query: 169 RNYGKFNHDVLMK----VPKDIALT--EISGITSNPCTAYRMLKDY--NSLSPGDVVIQN 220
            N+G F    L+K    +PK   LT  E +       TAYR L  +   ++ PGD V+  
Sbjct: 137 TNFGSFAEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPAAVKPGDNVLIW 196

Query: 221 GANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV 266
           GA    G    Q+AR  G   + +V + +       Y +SLGA+ V
Sbjct: 197 GAAGGLGSYATQLARAGGGNPVAVVSSPEK----AEYCRSLGAEAV 238

The enzyme modelled by This model is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae. Length = 398

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score = 59.5 bits (145), Expect = 1e-09
 Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 4/79 (5%)

Query: 82  GTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGE 141
           G PL +  VE   +   +  EV +K+L   V   D  T+ G  P +   P + G EG G 
Sbjct: 12  GKPLSIEEVE---VAPPKAGEVRIKILATGVCHTDAYTLSGADP-EGLFPVILGHEGAGI 67

Query: 142 VVEVGSDVSSLAVGDHVIP 160
           V  VG  V+S+  GDHVIP
Sbjct: 68  VESVGEGVTSVKPGDHVIP 86

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 67/284 (23%), Positives = 107/284 (37%), Gaps = 55/284 (19%)

Query: 102 EVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPD 161
           EV++++  + +  +D++     +        +PG E  G VV VG  V+   VGD V+  
Sbjct: 26  EVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFRVGDRVMV- 84

Query: 162 TQHLG----------TWRN--------YGKFNHD------------VLMKVPKDI----- 186
             H             W          YG +N D             L+ +P D+     
Sbjct: 85  -YHYVGCGACRNCRRGWMQLCTSKRAAYG-WNRDGGHAEYMLVPEKTLIPLPDDLSFADG 142

Query: 187 -ALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIV 245
             L    G      TAY  L+    +S  D V+  GA    G   + +AR  G + +  V
Sbjct: 143 ALLLCGIG------TAYHALR-RVGVSGRDTVLVVGAGPV-GLGALMLARALGAEDVIGV 194

Query: 246 RNRDDIDKLKSYLKSLGADYVFT--EEELRNISRDASIPKPKLALNCVGGNSATNL-LRT 302
              D   +     K+LGAD+V    +++++ I    S     +A+ C G  +A  L L  
Sbjct: 195 ---DPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNTAARRLALEA 251

Query: 303 LVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHW-MTRWQKE 345
           +   G +V   G   E     ++  I K  TL G W  +    E
Sbjct: 252 VRPWGRLV-LVGEGGELTIEVSNDLIRKQRTLIGSWYFSVPDME 294

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 76/298 (25%), Positives = 116/298 (38%), Gaps = 51/298 (17%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
           +V+   G P  V   E          + +VK+  A +  +D++  +G   I  T   V G
Sbjct: 4   VVF--KG-PGDVRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRG--HIPSTPGFVLG 58

Query: 136 FEGVGEVVEVGSDVSSLAVGDHVI-PDTQHLG---------TWR--------NYGKFNHD 177
            E VGEVVEVG +V +L VGD V+ P T   G         + R          G  N D
Sbjct: 59  HEFVGEVVEVGPEVRTLKVGDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSPNLD 118

Query: 178 --------------VLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGAN 223
                          L+K+P  ++      +     T Y   K    + PGD V   G  
Sbjct: 119 GAQAEYVRVPFADGTLLKLPDGLSDEAALLLGDILPTGYFGAKRA-QVRPGDTVAVIGC- 176

Query: 224 SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL---KSLGADYV-FTEEELRNISRDA 279
              G   +  A+  G   +        +D +   L    +LGA+ + F + E     R+A
Sbjct: 177 GPVGLCAVLSAQVLGAARV-FA-----VDPVPERLERAAALGAEPINFEDAEPVERVREA 230

Query: 280 SIPK-PKLALNCVGGNSATNLLRTLVSK-GVMVTYGGMSREPVQIPTSAFIFKDITLR 335
           +  +   + L  VGG +A +L   LV   GV+ + G  + E    P      K++TLR
Sbjct: 231 TEGRGADVVLEAVGGAAALDLAFDLVRPGGVISSVGVHTAEEFPFPGLDAYNKNLTLR 288

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score = 57.4 bits (139), Expect = 5e-09
 Identities = 32/76 (42%), Positives = 43/76 (56%), Gaps = 5/76 (6%)

Query: 84  PLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVV 143
           PL +  VE   L+     EV+VK+  A +  +D++ I G  P +P LP   G E  G VV
Sbjct: 20  PLVIEEVE---LDPPGPGEVLVKIAAAGLCHSDLSVINGDRP-RP-LPMALGHEAAGVVV 74

Query: 144 EVGSDVSSLAVGDHVI 159
           EVG  V+ L VGDHV+
Sbjct: 75  EVGEGVTDLEVGDHVV 90

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family

 Score = 56.9 bits (138), Expect = 5e-09
 Identities = 57/242 (23%), Positives = 92/242 (38%), Gaps = 65/242 (26%)

Query: 82  GTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGE 141
           G P  V  +E   L+  +  EV+VK++ + +  +D + + G  P+ P  P + G EG G 
Sbjct: 11  GQPWEVEEIE---LDDPKAGEVLVKLVASGLCHSDEHLVTGDLPM-PRYPILGGHEGAGV 66

Query: 142 VVEVGSDVSSLAVGDHV---------------------------------IPDTQH---- 164
           V +VG  V+ +  GDHV                                 I D  +    
Sbjct: 67  VTKVGPGVTGVKPGDHVVLSFIPACGRCRWCSTGLQNLCDLGAALLTGSQISDGTYRFHA 126

Query: 165 ----------LGTWRNYGKFNHDVLMKVPKDIALTEIS----GITSNPCTAYRMLKDYNS 210
                     LGT+  Y       ++K+  DI L +      G+ +   +A  +      
Sbjct: 127 DGQDVGQMCLLGTFSEYTVVPEASVVKIDDDIPLDKACLVGCGVPTGWGSAVNI----AD 182

Query: 211 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDID-KLKSYLKSLGADYVFTE 269
           + PGD V+  G     G N +Q A   G + +  V   D ++ K +  LK  GA + F  
Sbjct: 183 VRPGDTVVVMGI-GGVGINAVQGAAVAGARKVIAV---DPVEFKREQALK-FGATHAFAS 237

Query: 270 EE 271
            E
Sbjct: 238 ME 239

This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369

>gnl|CDD|131872 TIGR02825, B4_12hDH, leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

 Score = 56.9 bits (137), Expect = 6e-09
 Identities = 71/280 (25%), Positives = 116/280 (41%), Gaps = 35/280 (12%)

Query: 137 EGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNY----GKFNHDVLMKVPKDIALTEIS 192
           + V  VVE  S   +L  G  V+      G W ++    GK    +L + P  + L+   
Sbjct: 63  QQVARVVE--SKNVALPKGTIVL---ASPG-WTSHSISDGKDLEKLLTEWPDTLPLSLAL 116

Query: 193 GITSNP-CTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDI 251
           G    P  TAY  L +   +  G+ V+ N A  A G  V QIA+  G K +    + + +
Sbjct: 117 GTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKV 176

Query: 252 DKLKSYLKSLGADYVF---TEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGV 308
                YLK LG D  F   T + L    + AS        + VGG  +  ++  +   G 
Sbjct: 177 A----YLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGR 232

Query: 309 MVTYGGMSRE------PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEM 362
           +   G +S        P   P    I++++ + G  + RWQ E ++ A     + EL + 
Sbjct: 233 IAICGAISTYNRTGPLPPGPPPEIVIYQELRMEGFIVNRWQGEVRQKA-----LKELLKW 287

Query: 363 MRTGKLAAPAHKFVT--LKNFQEALMNTMSIQ--GKSGVK 398
           +  GK+     ++V    +N   A M  +  +  GK+ VK
Sbjct: 288 VLEGKIQ--YKEYVIEGFENMPAAFMGMLKGENLGKTIVK 325

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. Length = 325

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score = 56.4 bits (137), Expect = 7e-09
 Identities = 63/296 (21%), Positives = 110/296 (37%), Gaps = 62/296 (20%)

Query: 85  LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVE 144
           +R+  V           EV+VK+    +   D+  I+G +      P + G E  GE+VE
Sbjct: 12  VRLEEVPVPEPGP---GEVLVKVRACGICGTDVKKIRGGHT-DLKPPRILGHEIAGEIVE 67

Query: 145 VGSDVSSLAVGD-----HVIP---------DTQHL-GTWRNYGK---------------- 173
           VG  V+   VGD       +P           +++   ++ +G                 
Sbjct: 68  VGDGVTGFKVGDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGNLYDGGFAEYVRVPAWA 127

Query: 174 FNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQI 233
                ++K+P +++  E + +    C      +    + PGD V+  GA    G     +
Sbjct: 128 VKRGGVLKLPDNVSFEEAALVEPLAC-CINAQRKAG-IKPGDTVLVIGA-GPIGLLHAML 184

Query: 234 ARHWGLKTINIV-RNRDDIDKLKSYLKSLGADYVF--TEEELRNISR--------DASIP 282
           A+  G + + +   N   ++      K LGADY     EE+L    R        D  I 
Sbjct: 185 AKASGARKVIVSDLNEFRLEF----AKKLGADYTIDAAEEDLVEKVRELTDGRGADVVIV 240

Query: 283 KPKLALNCVGGNSATNLLRTLVSK-GVMVTYGGMSR-EPVQIPTSAFIFKDITLRG 336
                    G   A      LV K G ++ +GG+ +   V I  +   +++IT+ G
Sbjct: 241 -------ATGSPEAQAQALELVRKGGRILFFGGLPKGSTVNIDPNLIHYREITITG 289

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score = 56.0 bits (136), Expect = 1e-08
 Identities = 54/251 (21%), Positives = 86/251 (34%), Gaps = 62/251 (24%)

Query: 129 TLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPD-TQHLGT--WRNYGKFNHDV------- 178
           T P   G E  G VVEVGS V+   VGD V+ + T   GT      G +N          
Sbjct: 63  TAPVTLGHEFSGVVVEVGSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGFIGL 122

Query: 179 -----------------LMKVPKDI-----ALTEISGITSNPCT-AYRMLKDYNSLSPGD 215
                            + K+P ++     AL E       P   A+  ++      PGD
Sbjct: 123 GGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALVE-------PLAVAWHAVRRSG-FKPGD 174

Query: 216 VVIQNGANSACGQNVIQIARHWGLKTINIV---RNRDDIDKLKSYLKSLGADYVF----- 267
             +  GA    G   I   +  G   I +      R      +   + LGA  V      
Sbjct: 175 TALVLGA-GPIGLLTILALKAAGASKIIVSEPSEAR------RELAEELGATIVLDPTEV 227

Query: 268 -TEEELRNISRDASIPKPKLALNCVGGNSATNL-LRTLVSKGVMVTYGGMSREPVQIPTS 325
               E+R ++    +    ++ +C G  +  +  +  L  +G  V      + P+    +
Sbjct: 228 DVVAEVRKLTGGGGV---DVSFDCAGVQATLDTAIDALRPRGTAVNVAIWEK-PISFNPN 283

Query: 326 AFIFKDITLRG 336
             + K+ TL G
Sbjct: 284 DLVLKEKTLTG 294

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 4/79 (5%)

Query: 82  GTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGE 141
           G PL++  V+   +   QK EV+V+++   V   D  T+ G  P +   P + G EG G 
Sbjct: 11  GQPLKIEEVD---VEMPQKGEVLVRIVATGVCHTDAFTLSGADP-EGVFPVILGHEGAGI 66

Query: 142 VVEVGSDVSSLAVGDHVIP 160
           V  VG  V+S+ VGDHVIP
Sbjct: 67  VEAVGEGVTSVKVGDHVIP 85

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score = 55.6 bits (135), Expect = 1e-08
 Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
           LVY   G  L V  V           EV++K+    +   D++  +G +   P  P VPG
Sbjct: 4   LVYEGPGE-LEVEEVPVPEP---GPDEVLIKVAACGICGTDLHIYEGEFGAAP--PLVPG 57

Query: 136 FEGVGEVVEVGSDVSSLAVGDHVIPD 161
            E  G VV VGS V+   VGD V  D
Sbjct: 58  HEFAGVVVAVGSKVTGFKVGDRVAVD 83

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|225041 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only]

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 42/165 (25%), Positives = 67/165 (40%), Gaps = 18/165 (10%)

Query: 102 EVVVKMLVAPVNPA------DINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVG 155
           +V+++ L   ++P       D  +     P++     V G   V +VV   S+      G
Sbjct: 41  QVLLRTLYLSLDPYMRGRMSDAPSY--APPVELGEVMVGG--TVAKVVA--SNHPGFQPG 94

Query: 156 DHVIPDTQHLGTWRNYGKFNHDVLMKV-PKDIALTEISGITSNP-CTAYRMLKDYNSLSP 213
           D V+      G W+ Y   + + L K+ P    L+   G+   P  TAY  L D      
Sbjct: 95  DIVV---GVSG-WQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKA 150

Query: 214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL 258
           G+ V+ + A  A G  V QIA+  G + + I    +  D L   L
Sbjct: 151 GETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEEL 195

Length = 340

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 72/317 (22%), Positives = 119/317 (37%), Gaps = 37/317 (11%)

Query: 83  TPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTI-QGVYP-IKPTLPAVPGFEGVG 140
            P R    E+    +    +V+V++    V  +D+    QG    + P  P  PG EG G
Sbjct: 3   GPGRFEVEEHP-RPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWG 61

Query: 141 EVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCT 200
            VV +G  V  LAVGD V   +   G +  Y   + D  + +P    L   +        
Sbjct: 62  RVVALGPGVRGLAVGDRVAGLSG--GAFAEYDLADADHAVPLP--SLLDGQAFPGEPLGC 117

Query: 201 AYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS 260
           A  + +    +  G  V   GA    G   +Q+A   G + +  +  R     L    + 
Sbjct: 118 ALNVFRRGW-IRAGKTVAVIGAGFI-GLLFLQLAAAAGARRVIAIDRRPARLALA---RE 172

Query: 261 LGADYVFTEEELRNISRDASIPKPKLA---LNCVGGNSATNLLRTLVS-KGVMVTYGGMS 316
           LGA  V T++    + R   +     A   +  VG     +L   LV+ +G +V +G   
Sbjct: 173 LGATEVVTDDSEAIVERVRELTGGAGADVVIEAVGHQWPLDLAGELVAERGRLVIFGYHQ 232

Query: 317 REPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKS-----MMNELTEMMRTGKLAAP 371
             P  +P   + +K I L              + ER        M E  +++  G+L   
Sbjct: 233 DGPRPVPFQTWNWKGIDL------------INAVERDPRIGLEGMREAVKLIADGRLDLG 280

Query: 372 A---HKFVTLKNFQEAL 385
           +   H+F  L+   +A 
Sbjct: 281 SLLTHEF-PLEELGDAF 296

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 67/293 (22%), Positives = 106/293 (36%), Gaps = 69/293 (23%)

Query: 102 EVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSS------LAVG 155
            V+V++ +A V  +D++T+ G  P  P LP + G EGVG VV +G  V++      L VG
Sbjct: 27  AVLVRVRLAGVCGSDVHTVAGRRPRVP-LPIILGHEGVGRVVALGGGVTTDVAGEPLKVG 85

Query: 156 DHVI---------------------PDTQHLGT------WRNYGKF-NHDVL------MK 181
           D V                       + +  G           G +  H  L      ++
Sbjct: 86  DRVTWSVGAPCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLSGGYAEHIYLPPGTAIVR 145

Query: 182 VPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKT 241
           VP ++     +       T    L     +  GD V+  GA    G   +  A+  G + 
Sbjct: 146 VPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGA-GPLGLYAVAAAKLAGARR 204

Query: 242 INIVRNRDDIDKLKSYLK---SLGADYV-----FTEEELRNISRDASIPKP-KLALNCVG 292
           + IV     ID     L+     GAD         + + R I RD +  +   + +   G
Sbjct: 205 V-IV-----IDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGADVVIEASG 258

Query: 293 GNSAT----NLLR---TLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHW 338
             +A      LLR   T V  G  V   G     V +     + K++T+ G  
Sbjct: 259 HPAAVPEGLELLRRGGTYVLVG-SVAPAG----TVPLDPERIVRKNLTIIGVH 306

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|234026 TIGR02823, oxido_YhdH, putative quinone oxidoreductase, YhdH/YhfP family

 Score = 54.1 bits (131), Expect = 4e-08
 Identities = 65/273 (23%), Positives = 111/273 (40%), Gaps = 44/273 (16%)

Query: 87  VVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVG 146
              VE   L+ + + +V++K+  + +N  D   I G   +  + P +PG +  G VV   
Sbjct: 13  SAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS-- 70

Query: 147 SDVSSLAVGDHVIPD-----TQHLGTWRNYGKFNHDVLMKVPKDIALTE-----ISGITS 196
           S+      GD VI         H G +  Y +   D L+ +P+ ++L E      +G T+
Sbjct: 71  SEDPRFREGDEVIVTGYGLGVSHDGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTA 130

Query: 197 NPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKS 256
                  + ++  +   G V++  GA    G   + I    G + +      ++ D    
Sbjct: 131 ALSV-MALERNGLTPEDGPVLV-TGATGGVGSLAVAILSKLGYEVVASTGKAEEED---- 184

Query: 257 YLKSLGADYVFTEEELRNISRDASIPKPKL--------ALNCVGGNSATNLLRTLVSKGV 308
           YLK LGA  V        I R+   P  K         A++ VGG++  N+L  L   G 
Sbjct: 185 YLKELGASEV--------IDREDLSPPGKPLEKERWAGAVDTVGGHTLANVLAQLKYGGA 236

Query: 309 MVTYG---GMSREPVQIPTSA--FIFKDITLRG 336
           +   G   G       +PT+   FI + ++L G
Sbjct: 237 VAACGLAGGP-----DLPTTVLPFILRGVSLLG 264

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc [Unknown function, Enzymes of unknown specificity]. Length = 323

>gnl|CDD|182701 PRK10754, PRK10754, quinone oxidoreductase, NADPH-dependent; Provisional

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 46/174 (26%), Positives = 76/174 (43%), Gaps = 2/174 (1%)

Query: 72  LANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLP 131
           +A ++ +++HG P  V+     T     ++EV V+     +N  D     G+YP  P+LP
Sbjct: 1   MAKRIEFHKHGGP-EVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYP-PPSLP 58

Query: 132 AVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEI 191
           +  G E  G V +VGS V  + VGD V+     LG + +      D    +P  I+  + 
Sbjct: 59  SGLGTEAAGVVSKVGSGVKHIKVGDRVVYAQSALGAYSSVHNVPADKAAILPDAISFEQA 118

Query: 192 SGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIV 245
           +       T Y +L+    + P +  + + A    G    Q A+  G K I  V
Sbjct: 119 AASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTV 172

Length = 327

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 14/124 (11%)

Query: 130 LPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALT 189
           LP  PG+  VG VVEVGS V+    GD V       G          ++L+ +P  +   
Sbjct: 20  LPLPPGYSSVGRVVEVGSGVTGFKPGDRVF----CFGPHAERVVVPANLLVPLPDGLPPE 75

Query: 190 EISGI-TSNPCTAYRMLKDYNSLSPGD--VVIQNGANSACGQNVIQIARHWGLKTINIVR 246
                 T+   TA   ++D      G+   V+  G     G    Q+A+  G + + +  
Sbjct: 76  R--AALTALAATALNGVRDAE-PRLGERVAVVGLG---LVGLLAAQLAKAAGAREV-VGV 128

Query: 247 NRDD 250
           + D 
Sbjct: 129 DPDA 132

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 6/95 (6%)

Query: 77  VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGF 136
           VY   G  + V  V +  +      + +V++    +  +D++  +G    +P    V G 
Sbjct: 5   VYGGPGN-VAVEDVPDPKI--EHPTDAIVRITTTAICGSDLHMYRGRTGAEP--GLVLGH 59

Query: 137 EGVGEVVEVGSDVSSLAVGDHV-IPDTQHLGTWRN 170
           E +GEV EVGS V SL VGD V +P     G  RN
Sbjct: 60  EAMGEVEEVGSAVESLKVGDRVVVPFNVACGRCRN 94

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
           LVY   G  + +  V +  +     H+ +V++    +  +D++  +G  P       + G
Sbjct: 4   LVYLGPGK-IGLEEVPDPKIQG--PHDAIVRVTATSICGSDLHIYRGGVPGAKH-GMILG 59

Query: 136 FEGVGEVVEVGSDVSSLAVGDHVI 159
            E VGEVVEVGSDV  L  GD V 
Sbjct: 60  HEFVGEVVEVGSDVKRLKPGDRVS 83

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 101 HEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIP 160
           HEV +K++   +  +D + + G        P + G E  G V  VG  V+++  GD VIP
Sbjct: 33  HEVRIKIVATGICRSDDHVVSGKLVTP--FPVILGHEAAGIVESVGEGVTTVKPGDKVIP 90

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373

>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase

 Score = 50.2 bits (120), Expect = 8e-07
 Identities = 28/65 (43%), Positives = 37/65 (56%), Gaps = 1/65 (1%)

Query: 94  TLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLA 153
           TL      +VV+K++   +   D++ I+    +    P VPG E VGEVVEVGSDVS   
Sbjct: 28  TLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGMS-NYPMVPGHEVVGEVVEVGSDVSKFT 86

Query: 154 VGDHV 158
           VGD V
Sbjct: 87  VGDIV 91

Length = 357

>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 12/175 (6%)

Query: 102 EVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPD 161
            V++++    +N ++I T QG  P     P V G E VGEV E      +   G  V   
Sbjct: 29  WVLIRVKAFGLNRSEIFTRQGHSP-SVKFPRVLGIEAVGEVEEAPG--GTFTPGQRVATA 85

Query: 162 TQHLGTWRN-----YGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDV 216
              +G   +     Y    ++ +  +  D++  E++ +     TA+  L     L PGD 
Sbjct: 86  MGGMGRTFDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDT 145

Query: 217 VIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE 271
           ++  G  S+ G   +++A+  G       R+     +  + LK LGAD V  ++ 
Sbjct: 146 LLIRGGTSSVGLAALKLAKALGATVTATTRS----PERAALLKELGADEVVIDDG 196

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320

>gnl|CDD|234024 TIGR02817, adh_fam_1, zinc-binding alcohol dehydrogenase family protein

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 59/286 (20%), Positives = 115/286 (40%), Gaps = 34/286 (11%)

Query: 101 HEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVI- 159
            +++V++    VNP D      + P +   P + G++  G VV VG +V+    GD V  
Sbjct: 30  RDLLVEVKAISVNPVDTKVRARMAP-EAGQPKILGWDAAGVVVAVGDEVTLFKPGDEVWY 88

Query: 160 -PDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPG---- 214
             D    G+   +   +  ++   PK ++  E + +     TA+ +L D   ++      
Sbjct: 89  AGDIDRPGSNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRLGINDPVAGD 148

Query: 215 -DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELR 273
              ++  G     G  +IQ+AR     T+    +R +    + ++  LGA +V       
Sbjct: 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPES---QEWVLELGAHHVI------ 199

Query: 274 NISRDASIPKPKLALNCVGGNSATN--------LLRTLVSKGVMVTYGGMSREPVQIPTS 325
           + S+       KL L  V    +          ++  L  +G       +  +P ++  S
Sbjct: 200 DHSKPLKAQLEKLGLEAVSYVFSLTHTDQHFKEIVELLAPQGRF----ALIDDPAELDIS 255

Query: 326 AFIFKDITLRGHW---MTRWQKENKESAERKSMMNELTEMMRTGKL 368
            F  K I+L  HW    TR   +  +  E+  ++N +  ++  GK+
Sbjct: 256 PFKRKSISL--HWEFMFTRSMFQTADMIEQHHLLNRVARLVDAGKI 299

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model [Energy metabolism, Fermentation]. Length = 336

>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like

 Score = 48.4 bits (116), Expect = 3e-06
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 6/85 (7%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYP-IKPTLPAVP 134
           LVY+  G  +        T+      + +VKML   +   D++ ++G  P + P    + 
Sbjct: 4   LVYHGPGK-ISWEDRPKPTIQE--PTDAIVKMLKTTICGTDLHILKGDVPTVTPGR--IL 58

Query: 135 GFEGVGEVVEVGSDVSSLAVGDHVI 159
           G EGVG V EVGS V++  VGD V+
Sbjct: 59  GHEGVGVVEEVGSAVTNFKVGDRVL 83

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score = 47.6 bits (114), Expect = 5e-06
 Identities = 85/353 (24%), Positives = 134/353 (37%), Gaps = 92/353 (26%)

Query: 97  SVQKHEVVVKMLVAPVNPADINTIQGVYP--------IKPTLPAVPGFEGVGEVVEVGSD 148
                EV++K+L A +   D++    +Y         IKP  P + G E  GEVVEVG  
Sbjct: 22  KPGPGEVLIKVLAASICGTDVH----IYEWDEWAQSRIKP--PLIFGHEFAGEVVEVGEG 75

Query: 149 VSSLAVGD---------------------HVIPDTQHLGTWRN-----YGKFNHDVLMKV 182
           V+ + VGD                     HV  +T+ LG   +     Y     + L K 
Sbjct: 76  VTRVKVGDYVSAETHIVCGKCYQCRTGNYHVCQNTKILGVDTDGCFAEYVVVPEENLWKN 135

Query: 183 PKDIALTEISGITSNPC-----TAYRMLKDYNSLSPGDVVIQNGANSACGQ---NVIQIA 234
            KDI   EI+ I   P      T          +S   V+I     + CG      I +A
Sbjct: 136 DKDIPP-EIASI-QEPLGNAVHTVLA-----GDVSGKSVLI-----TGCGPIGLMAIAVA 183

Query: 235 RHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEEELRNISRDASIPKPKLALNCVG 292
           +  G   + I  + +         K +GAD V    EE++  +          + L   G
Sbjct: 184 KAAGASLV-IASDPN--PYRLELAKKMGADVVINPREEDVVEVKSVTDGTGVDVVLEMSG 240

Query: 293 GNSATNLLRTLVSKGVMVTYGGMSREPVQIP-TSAFIFKDITLRG-----HWMTRWQKEN 346
              A       ++ G  V+  G+   PV I   +  IFK +T++G      + T W +  
Sbjct: 241 NPKAIEQGLKALTPGGRVSILGLPPGPVDIDLNNLVIFKGLTVQGITGRKMFET-WYQ-- 297

Query: 347 KESAERKSMMNELTEMMRTGKLA-AP--AHKFVTLKNFQEALMNTMSIQGKSG 396
                       ++ ++++GK+  +P   HK   L++F+EA    M   GK G
Sbjct: 298 ------------VSALLKSGKVDLSPVITHKL-PLEDFEEA-FELM-RSGKCG 335

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|222256 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase

 Score = 44.7 bits (106), Expect = 9e-06
 Identities = 30/128 (23%), Positives = 49/128 (38%), Gaps = 22/128 (17%)

Query: 261 LGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV 320
           LGAD V       +     +     + L+ VGG +    L  L   G +V+ GG    P 
Sbjct: 1   LGADEVIDYTT-EDFEEATAGEGVDVVLDTVGGETLLRALLALKPGGRLVSIGG----PD 55

Query: 321 QIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL------------ 368
            + + A       +RG ++           E  + + EL E++  GKL            
Sbjct: 56  LLLSVAAKAGGRGVRGVFLF-----PVSPGEAGADLAELAELVEAGKLRPVIDRVFPLEE 110

Query: 369 AAPAHKFV 376
           AA AH+++
Sbjct: 111 AAEAHRYL 118

Length = 129

>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated

 Score = 46.0 bits (110), Expect = 2e-05
 Identities = 19/33 (57%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 126 IKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHV 158
           I    P V G E VGEVVEVGS+V+   VGD V
Sbjct: 55  IPV--PMVVGHEFVGEVVEVGSEVTGFKVGDRV 85

Length = 341

>gnl|CDD|176248 cd08288, MDR_yhdh, Yhdh putative quinone oxidoreductases

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 64/281 (22%), Positives = 110/281 (39%), Gaps = 39/281 (13%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
           LV  +         +     + + + +V V++  + +N  D   I G   I  T P VPG
Sbjct: 4   LVLEKDDGGTSA-ELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPG 62

Query: 136 FEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRN-----YGKFNHDVLMKVPKDIALTE 190
            +  G VVE  S       GD V+     +G           +   D L+ +P+ ++  +
Sbjct: 63  IDLAGTVVE--SSSPRFKPGDRVVLTGWGVGERHWGGYAQRARVKADWLVPLPEGLSARQ 120

Query: 191 ISGITSNPCTAYRMLK----DYNSLSPGD-VVIQNGANSACGQNVIQIARHWGLKTINIV 245
              I +   TA  ML     + + ++PGD  V+  GA    G   + +    G + +   
Sbjct: 121 AMAIGTAGFTA--MLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGYEVVAST 178

Query: 246 RNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKL--------ALNCVGGNSAT 297
              ++ D    YL+SLGA  +        I R       +         A++ VGG++  
Sbjct: 179 GRPEEAD----YLRSLGASEI--------IDRAELSEPGRPLQKERWAGAVDTVGGHTLA 226

Query: 298 NLLRTLVSKGVMVTYGGMSREPVQIPTSA--FIFKDITLRG 336
           N+L      G  V   G++     +PT+   FI + +TL G
Sbjct: 227 NVLAQTRYGGA-VAACGLAGGA-DLPTTVMPFILRGVTLLG 265

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 324

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score = 44.4 bits (106), Expect = 6e-05
 Identities = 13/25 (52%), Positives = 17/25 (68%)

Query: 135 GFEGVGEVVEVGSDVSSLAVGDHVI 159
           G E +G V EVG +V +L VGD V+
Sbjct: 59  GHEFMGVVEEVGPEVRNLKVGDRVV 83

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 58/213 (27%), Positives = 84/213 (39%), Gaps = 42/213 (19%)

Query: 86  RVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEV 145
               V  +TL  ++  E +VKM    V   D++   G +  K     + G EG+G V EV
Sbjct: 11  TGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGDKTGR--ILGHEGIGIVKEV 68

Query: 146 GSDVSSLAVGDHVIPDTQHLG----------------TWRNYGKFNHDVLM--------- 180
           G  V+SL VGD V       G                + +N G +  D  M         
Sbjct: 69  GPGVTSLKVGDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAG-YTVDGGMAEQCIVTAD 127

Query: 181 ---KVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARH- 236
              KVP+ +   + S IT    T Y+ +K    + PG  +   GA    G   +Q A++ 
Sbjct: 128 YAVKVPEGLDPAQASSITCAGVTTYKAIKVSG-IKPGQWIAIYGA-GGLGNLALQYAKNV 185

Query: 237 WGLKTINIVRNRDDI--DKLKSYLKSLGADYVF 267
           +  K I +     DI  DKL    K +GAD   
Sbjct: 186 FNAKVIAV-----DINDDKLA-LAKEVGADLTI 212

Length = 338

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 7/61 (11%)

Query: 102 EVVVKMLVAPVNPADINTIQGVYPIKP---TLPAVPGFEGVGEVVEVGSDVSSLAVGDHV 158
           + +V+        +D++T+ G  P +     L    G E VG V EVGS+V     GD V
Sbjct: 26  DAIVRPTAVAPCTSDVHTVWGGAPGERHGMIL----GHEAVGVVEEVGSEVKDFKPGDRV 81

Query: 159 I 159
           I
Sbjct: 82  I 82

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 3/79 (3%)

Query: 82  GTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGE 141
           G PL +  +    ++  QK EV +K+L   +   D++  +G    +   P + G E  G 
Sbjct: 20  GEPLVMEEIR---VDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGI 76

Query: 142 VVEVGSDVSSLAVGDHVIP 160
           V  VG  V  L  GDHVIP
Sbjct: 77  VESVGEGVEDLKAGDHVIP 95

Length = 381

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 5/76 (6%)

Query: 85  LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQ--GVYPIKPTLPAVPGFEGVGEV 142
           LRV              EV V++    +  +D++  Q  G   ++   P V G E  G V
Sbjct: 9   LRVEERPAPEP---GPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVV 65

Query: 143 VEVGSDVSSLAVGDHV 158
             VG  V+ LA G  V
Sbjct: 66  EAVGPGVTGLAPGQRV 81

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 56/213 (26%), Positives = 82/213 (38%), Gaps = 51/213 (23%)

Query: 101 HEVVVKMLVAPVNPADINTIQG--------VYP--IKPTLPAVPGFEGVGEVVEVGSDVS 150
            E++VK+    +   DI    G          P  +KP  P +PG E VG VVE+G    
Sbjct: 25  GEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKP--PMIPGHEFVGRVVELGEGAE 82

Query: 151 S--LAVGDHVIPDTQHLGTWR----NYGKF----NHDVL---------M----------- 180
              + VGD VI + Q +  W     N G++     HD+          M           
Sbjct: 83  ERGVKVGDRVISE-QIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGMAEYMRFPKEAI 141

Query: 181 --KVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWG 238
             KVP DI   +   I    C  + +  D  ++   DVV+  GA    G  +I  AR   
Sbjct: 142 VHKVPDDIPPEDAILIEPLACALHAV--DRANIKFDDVVVLAGAGP-LGLGMIGAARLKN 198

Query: 239 LKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE 271
            K + ++   D  D+  +  +  GAD V    E
Sbjct: 199 PKKLIVL---DLKDERLALARKFGADVVLNPPE 228

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350

>gnl|CDD|176247 cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 4/75 (5%)

Query: 85  LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVE 144
           +RV  V +  +   +  + V++++   V  +D+   +GV P +   PA  G E VG V E
Sbjct: 12  IRVEEVPDPVI--EEPTDAVIRVVATCVCGSDLWPYRGVSPTRA--PAPIGHEFVGVVEE 67

Query: 145 VGSDVSSLAVGDHVI 159
           VGS+V+S+  GD VI
Sbjct: 68  VGSEVTSVKPGDFVI 82

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 78/341 (22%), Positives = 127/341 (37%), Gaps = 73/341 (21%)

Query: 100 KHEVVVKMLVAPVNPADINTIQ----GVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVG 155
             EV++K+L   +   D++           IKP  P V G E  GEVV +G  V  + VG
Sbjct: 23  PGEVLIKVLATSICGTDVHIYNWDEWAQSRIKP--PQVVGHEVAGEVVGIGPGVEGIKVG 80

Query: 156 DHVIPDTQ--------------HL------------GTWRNYGKFNHDVLMKVPKDIALT 189
           D+V  +T               H+            G +  Y       + K PK I   
Sbjct: 81  DYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGCFAEYAVVPAQNIWKNPKSIP-P 139

Query: 190 EISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD 249
           E + I      A   +     +S   V++  GA    G   I +A+  G   + +     
Sbjct: 140 EYATIQEPLGNAVHTVLAGP-ISGKSVLV-TGA-GPIGLMAIAVAKASGAYPVIVS---- 192

Query: 250 DIDKLKSYL-KSLGADY---VFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVS 305
           D ++ +  L K +GA Y    F E+ ++ ++         + L   G   A       V+
Sbjct: 193 DPNEYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDVFLEMSGAPKALEQGLQAVT 252

Query: 306 KGVMVTYGGMSREPVQIP-TSAFIFKDITLRG----HWMTRWQKENKESAERKSMMNELT 360
            G  V+  G+    V I  T+  IFK +T+ G    H    W                ++
Sbjct: 253 PGGRVSLLGLPPGKVTIDFTNKVIFKGLTIYGITGRHMFETWYT--------------VS 298

Query: 361 EMMRTGKL-AAP--AHKFVTLKNFQEA--LMNTMSIQGKSG 396
            ++++GKL   P   HKF     F++   LM +    G++G
Sbjct: 299 RLIQSGKLDLDPIITHKF-KFDKFEKGFELMRS----GQTG 334

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|215606 PLN03154, PLN03154, putative allyl alcohol dehydrogenase; Provisional

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 57/223 (25%), Positives = 91/223 (40%), Gaps = 26/223 (11%)

Query: 131 PAVPG--FEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYG--KFNHDVLMKVP--K 184
           P VPG   EG G    V SD  +   GD +      +  W  Y   + + + L K+    
Sbjct: 73  PFVPGQRIEGFGVSKVVDSDDPNFKPGDLI----SGITGWEEYSLIRSSDNQLRKIQLQD 128

Query: 185 DIALTEISGITSNP-CTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTIN 243
           DI L+   G+      TAY    +  S   GD V  + A+ A GQ V Q+A+  G   + 
Sbjct: 129 DIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVG 188

Query: 244 IVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPK--PK---LALNCVGGNSATN 298
              +   +D LK+    LG D  F  +E  ++  DA++ +  P+   +  + VGG+    
Sbjct: 189 SAGSSQKVDLLKN---KLGFDEAFNYKEEPDL--DAALKRYFPEGIDIYFDNVGGDMLDA 243

Query: 299 LLRTLVSKGVMVTYGGMSREPVQIPTS-----AFIFKDITLRG 336
            L  +   G +   G +S   +            I K I ++G
Sbjct: 244 ALLNMKIHGRIAVCGMVSLNSLSASQGIHNLYNLISKRIRMQG 286

Length = 348

>gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 99  QKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHV 158
           Q  EV +K+L   +   D+   +      P  P + G E  G V  VG  V+ L  GDHV
Sbjct: 26  QAMEVRIKILHTSLCHTDVYFWEAKGQT-PLFPRILGHEAAGIVESVGEGVTDLKPGDHV 84

Query: 159 IP 160
           +P
Sbjct: 85  LP 86

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	405
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	100.0
KOG1202|consensus	2376		100.0
KOG1197|consensus	336		100.0
KOG0025|consensus	354		100.0
KOG0024|consensus	354		100.0
KOG0023|consensus	360		100.0
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	100.0
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	100.0
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	100.0
PLN02740	381	Alcohol dehydrogenase-like	100.0
PLN02586	360	probable cinnamyl alcohol dehydrogenase	100.0
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	100.0
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	100.0
PLN02827	378	Alcohol dehydrogenase-like	100.0
PLN02178	375	cinnamyl-alcohol dehydrogenase	100.0
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	100.0
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	100.0
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	100.0
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	100.0
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	100.0
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	100.0
PLN02514	357	cinnamyl-alcohol dehydrogenase	100.0
KOG0022|consensus	375		100.0
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	100.0
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	100.0
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	100.0
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	100.0
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	100.0
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	100.0
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	100.0
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	100.0
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	100.0
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	100.0
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	100.0
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	100.0
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	100.0
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	100.0
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	100.0
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	100.0
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	100.0
PTZ00354	334	alcohol dehydrogenase; Provisional	100.0
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	100.0
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	100.0
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	100.0
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	100.0
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	100.0
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	100.0
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	100.0
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	100.0
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	100.0
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	100.0
KOG1198|consensus	347		100.0
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	100.0
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	100.0
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	100.0
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	100.0
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	100.0
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	100.0
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	100.0
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	100.0
PRK10083	339	putative oxidoreductase; Provisional	100.0
PRK13771	334	putative alcohol dehydrogenase; Provisional	100.0
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	100.0
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	100.0
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	100.0
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	100.0
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	100.0
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	100.0
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	100.0
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	100.0
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	100.0
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	100.0
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	100.0
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	100.0
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	100.0
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	100.0
cd08252	336	AL_MDR Arginate lyase and other MDR family members	100.0
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	100.0
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	100.0
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	100.0
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	100.0
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	100.0
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	100.0
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	100.0
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	100.0
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	100.0
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	100.0
COG2130	340	Putative NADP-dependent oxidoreductases [General f	100.0
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	100.0
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	100.0
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	100.0
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	100.0
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	100.0
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	100.0
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	100.0
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	100.0
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	100.0
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	100.0
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	100.0
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	100.0
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	100.0
PLN02702	364	L-idonate 5-dehydrogenase	100.0
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	100.0
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	100.0
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	100.0
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	100.0
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	100.0
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	100.0
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	100.0
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	100.0
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	100.0
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	100.0
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	100.0
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	100.0
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	100.0
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	100.0
KOG1196|consensus	343		100.0
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.97
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	99.78
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	99.72
PF13602	127	ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ	99.53
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.37
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	99.34
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.5
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.35
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.2
PF11017	314	DUF2855: Protein of unknown function (DUF2855); In	98.16
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.07
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.01
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	97.98
PRK08324	681	short chain dehydrogenase; Validated	97.94
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.92
PLN02494	477	adenosylhomocysteinase	97.85
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.78
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	97.75
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.75
PRK12742	237	oxidoreductase; Provisional	97.73
KOG1205|consensus	282		97.69
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	97.61
PLN03209	576	translocon at the inner envelope of chloroplast su	97.59
PRK08339	263	short chain dehydrogenase; Provisional	97.55
PRK06198	260	short chain dehydrogenase; Provisional	97.55
PRK12939	250	short chain dehydrogenase; Provisional	97.53
PRK07109	334	short chain dehydrogenase; Provisional	97.53
PRK06139	330	short chain dehydrogenase; Provisional	97.53
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.51
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.46
PTZ00075	476	Adenosylhomocysteinase; Provisional	97.46
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	97.42
COG0300	265	DltE Short-chain dehydrogenases of various substra	97.39
PRK12828	239	short chain dehydrogenase; Provisional	97.39
PRK07806	248	short chain dehydrogenase; Provisional	97.39
PRK05993	277	short chain dehydrogenase; Provisional	97.36
PRK07904	253	short chain dehydrogenase; Provisional	97.34
PRK07576	264	short chain dehydrogenase; Provisional	97.32
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	97.32
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.24
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	97.23
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.23
PRK06182	273	short chain dehydrogenase; Validated	97.23
PRK06128	300	oxidoreductase; Provisional	97.2
PRK05693	274	short chain dehydrogenase; Provisional	97.2
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	97.2
PRK07832	272	short chain dehydrogenase; Provisional	97.19
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	97.18
PRK05866	293	short chain dehydrogenase; Provisional	97.18
PRK08085	254	gluconate 5-dehydrogenase; Provisional	97.17
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.16
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	97.16
PRK09072	263	short chain dehydrogenase; Provisional	97.15
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.13
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.13
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.13
PRK07478	254	short chain dehydrogenase; Provisional	97.12
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	97.11
PRK05867	253	short chain dehydrogenase; Provisional	97.1
PRK07831	262	short chain dehydrogenase; Provisional	97.08
PRK05872	296	short chain dehydrogenase; Provisional	97.07
PRK09291	257	short chain dehydrogenase; Provisional	97.06
PRK08265	261	short chain dehydrogenase; Provisional	97.06
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	97.05
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.04
PRK12747	252	short chain dehydrogenase; Provisional	97.02
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	97.01
PRK07814	263	short chain dehydrogenase; Provisional	97.01
PRK06949	258	short chain dehydrogenase; Provisional	96.99
PRK08862	227	short chain dehydrogenase; Provisional	96.98
PRK07523	255	gluconate 5-dehydrogenase; Provisional	96.98
PRK07326	237	short chain dehydrogenase; Provisional	96.97
PRK08267	260	short chain dehydrogenase; Provisional	96.97
PRK09186	256	flagellin modification protein A; Provisional	96.96
PRK07985	294	oxidoreductase; Provisional	96.96
PRK12938	246	acetyacetyl-CoA reductase; Provisional	96.95
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	96.94
PRK06172	253	short chain dehydrogenase; Provisional	96.93
PRK07062	265	short chain dehydrogenase; Provisional	96.91
PRK06194	287	hypothetical protein; Provisional	96.91
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	96.9
PRK06500	249	short chain dehydrogenase; Provisional	96.87
PRK08628	258	short chain dehydrogenase; Provisional	96.87
PRK06181	263	short chain dehydrogenase; Provisional	96.86
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	96.86
PRK07677	252	short chain dehydrogenase; Provisional	96.86
PRK05854	313	short chain dehydrogenase; Provisional	96.85
PRK05876	275	short chain dehydrogenase; Provisional	96.85
PRK06914	280	short chain dehydrogenase; Provisional	96.84
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	96.84
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	96.84
PRK12937	245	short chain dehydrogenase; Provisional	96.83
PRK08589	272	short chain dehydrogenase; Validated	96.82
PRK07890	258	short chain dehydrogenase; Provisional	96.81
PRK07791	286	short chain dehydrogenase; Provisional	96.81
PRK08213	259	gluconate 5-dehydrogenase; Provisional	96.8
PRK07035	252	short chain dehydrogenase; Provisional	96.79
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	96.79
PRK07454	241	short chain dehydrogenase; Provisional	96.79
PRK07060	245	short chain dehydrogenase; Provisional	96.78
PRK08277	278	D-mannonate oxidoreductase; Provisional	96.77
PRK12829	264	short chain dehydrogenase; Provisional	96.77
KOG1201|consensus	300		96.77
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	96.76
PRK07063	260	short chain dehydrogenase; Provisional	96.74
PRK07097	265	gluconate 5-dehydrogenase; Provisional	96.74
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	96.74
PRK08643	256	acetoin reductase; Validated	96.73
PRK06701	290	short chain dehydrogenase; Provisional	96.72
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	96.72
PRK08340	259	glucose-1-dehydrogenase; Provisional	96.72
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	96.7
PRK08303	305	short chain dehydrogenase; Provisional	96.7
PRK06196	315	oxidoreductase; Provisional	96.7
COG2910	211	Putative NADH-flavin reductase [General function p	96.69
PRK06114	254	short chain dehydrogenase; Provisional	96.68
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	96.68
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	96.68
PLN02780	320	ketoreductase/ oxidoreductase	96.68
PRK06057	255	short chain dehydrogenase; Provisional	96.67
PRK06484	520	short chain dehydrogenase; Validated	96.67
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	96.66
PRK07453	322	protochlorophyllide oxidoreductase; Validated	96.65
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	96.64
PRK06125	259	short chain dehydrogenase; Provisional	96.62
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	96.62
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.62
PRK09242	257	tropinone reductase; Provisional	96.62
PRK07825	273	short chain dehydrogenase; Provisional	96.61
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.61
PRK06940	275	short chain dehydrogenase; Provisional	96.59
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.59
PRK07774	250	short chain dehydrogenase; Provisional	96.58
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	96.58
PRK06138	252	short chain dehydrogenase; Provisional	96.58
PRK06720	169	hypothetical protein; Provisional	96.58
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	96.57
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	96.57
PRK08017	256	oxidoreductase; Provisional	96.57
PRK08703	239	short chain dehydrogenase; Provisional	96.56
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	96.55
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	96.54
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	96.54
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.54
PRK06124	256	gluconate 5-dehydrogenase; Provisional	96.52
PRK08263	275	short chain dehydrogenase; Provisional	96.51
PRK07775	274	short chain dehydrogenase; Provisional	96.51
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	96.5
PRK06484	520	short chain dehydrogenase; Validated	96.49
PRK07024	257	short chain dehydrogenase; Provisional	96.49
PRK08177	225	short chain dehydrogenase; Provisional	96.49
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	96.49
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	96.48
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	96.48
PRK10538	248	malonic semialdehyde reductase; Provisional	96.46
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	96.46
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	96.44
PRK06197	306	short chain dehydrogenase; Provisional	96.44
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.44
CHL00194	317	ycf39 Ycf39; Provisional	96.44
PRK05875	276	short chain dehydrogenase; Provisional	96.43
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.43
PRK12743	256	oxidoreductase; Provisional	96.41
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	96.41
PRK06180	277	short chain dehydrogenase; Provisional	96.41
PRK07102	243	short chain dehydrogenase; Provisional	96.41
PRK05650	270	short chain dehydrogenase; Provisional	96.41
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.4
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	96.38
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	96.37
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.36
PRK08278	273	short chain dehydrogenase; Provisional	96.35
PRK06483	236	dihydromonapterin reductase; Provisional	96.35
PRK07074	257	short chain dehydrogenase; Provisional	96.35
PRK12367	245	short chain dehydrogenase; Provisional	96.35
PRK06841	255	short chain dehydrogenase; Provisional	96.35
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	96.34
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	96.32
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.31
PLN02253	280	xanthoxin dehydrogenase	96.31
KOG0725|consensus	270		96.3
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.29
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.27
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	96.24
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	96.23
PRK12746	254	short chain dehydrogenase; Provisional	96.21
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	96.18
PRK08251	248	short chain dehydrogenase; Provisional	96.16
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	96.16
PRK12548	289	shikimate 5-dehydrogenase; Provisional	96.16
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	96.14
PRK09135	249	pteridine reductase; Provisional	96.14
PRK12935	247	acetoacetyl-CoA reductase; Provisional	96.13
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	96.13
PLN02240	352	UDP-glucose 4-epimerase	96.12
PRK05599	246	hypothetical protein; Provisional	96.11
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.11
PRK07069	251	short chain dehydrogenase; Validated	96.11
PRK09134	258	short chain dehydrogenase; Provisional	96.1
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	96.1
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.1
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	96.07
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	96.05
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	96.03
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.03
PRK08226	263	short chain dehydrogenase; Provisional	96.03
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	96.02
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	96.02
PRK07067	257	sorbitol dehydrogenase; Provisional	96.02
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	96.01
PRK06482	276	short chain dehydrogenase; Provisional	95.99
TIGR02415	254	23BDH acetoin reductases. One member of this famil	95.99
PRK08936	261	glucose-1-dehydrogenase; Provisional	95.99
PRK05717	255	oxidoreductase; Validated	95.98
PRK06719	157	precorrin-2 dehydrogenase; Validated	95.98
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	95.97
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	95.97
PRK07201	657	short chain dehydrogenase; Provisional	95.96
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	95.95
PRK05855	582	short chain dehydrogenase; Validated	95.92
PRK08264	238	short chain dehydrogenase; Validated	95.9
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	95.89
PRK13940	414	glutamyl-tRNA reductase; Provisional	95.88
PRK10675	338	UDP-galactose-4-epimerase; Provisional	95.88
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	95.88
PRK06398	258	aldose dehydrogenase; Validated	95.87
PRK12744	257	short chain dehydrogenase; Provisional	95.87
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	95.86
PRK07577	234	short chain dehydrogenase; Provisional	95.85
PRK14967	223	putative methyltransferase; Provisional	95.83
PRK06953	222	short chain dehydrogenase; Provisional	95.82
KOG1209|consensus	289		95.81
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.78
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.78
PRK07402	196	precorrin-6B methylase; Provisional	95.77
PRK06947	248	glucose-1-dehydrogenase; Provisional	95.76
PRK04148	134	hypothetical protein; Provisional	95.71
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	95.71
PF13561	241	adh_short_C2: Enoyl-(Acyl carrier protein) reducta	95.71
PRK06123	248	short chain dehydrogenase; Provisional	95.71
PRK12827	249	short chain dehydrogenase; Provisional	95.69
PRK05884	223	short chain dehydrogenase; Provisional	95.67
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	95.67
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	95.66
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	95.65
PRK07856	252	short chain dehydrogenase; Provisional	95.59
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	95.59
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	95.58
PRK08309	177	short chain dehydrogenase; Provisional	95.53
PRK08618	325	ornithine cyclodeaminase; Validated	95.52
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	95.51
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	95.51
PRK06179	270	short chain dehydrogenase; Provisional	95.5
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	95.48
KOG1610|consensus	322		95.47
PRK08219	227	short chain dehydrogenase; Provisional	95.44
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	95.44
PRK06523	260	short chain dehydrogenase; Provisional	95.43
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	95.43
PRK11207	197	tellurite resistance protein TehB; Provisional	95.4
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	95.38
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	95.34
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.33
KOG1208|consensus	314		95.31
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.29
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	95.26
PRK07023	243	short chain dehydrogenase; Provisional	95.24
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	95.23
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.23
KOG1502|consensus	327		95.22
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.19
KOG1200|consensus	256		95.17
KOG1207|consensus	245		95.16
PRK06101	240	short chain dehydrogenase; Provisional	95.1
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	95.1
TIGR00438	188	rrmJ cell division protein FtsJ.	95.08
PLN00016	378	RNA-binding protein; Provisional	95.07
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	95.04
KOG1210|consensus	331		95.03
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	94.99
PLN02896	353	cinnamyl-alcohol dehydrogenase	94.99
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	94.97
PRK07578	199	short chain dehydrogenase; Provisional	94.94
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	94.94
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	94.92
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	94.9
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.87
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	94.86
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	94.81
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	94.8
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	94.8
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	94.79
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	94.79
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	94.78
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	94.76
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	94.71
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	94.71
PLN02653	340	GDP-mannose 4,6-dehydratase	94.7
PLN02244	340	tocopherol O-methyltransferase	94.69
PLN02928	347	oxidoreductase family protein	94.67
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	94.65
PRK12824	245	acetoacetyl-CoA reductase; Provisional	94.61
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.6
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	94.55
PLN02214	342	cinnamoyl-CoA reductase	94.55
PLN00015	308	protochlorophyllide reductase	94.54
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	94.52
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	94.52
PLN02366	308	spermidine synthase	94.47
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	94.43
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	94.41
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.39
PLN02695	370	GDP-D-mannose-3',5'-epimerase	94.38
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	94.37
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	94.32
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	94.31
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	94.3
PF08659	181	KR: KR domain; InterPro: IPR013968 This domain is	94.3
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	94.28
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	94.28
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	94.28
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	94.27
PRK07041	230	short chain dehydrogenase; Provisional	94.26
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	94.24
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	94.22
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	94.05
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	94.04
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	93.98
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	93.97
PRK08300	302	acetaldehyde dehydrogenase; Validated	93.93
KOG1252|consensus	362		93.93
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	93.92
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	93.89
PRK01581	374	speE spermidine synthase; Validated	93.89
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.88
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.87
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	93.84
KOG4169|consensus	261		93.84
PRK07574	385	formate dehydrogenase; Provisional	93.81
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	93.81
PLN00198	338	anthocyanidin reductase; Provisional	93.8
PLN02650	351	dihydroflavonol-4-reductase	93.78
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.76
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	93.75
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	93.74
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	93.73
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	93.71
PRK00811	283	spermidine synthase; Provisional	93.71
COG4122	219	Predicted O-methyltransferase [General function pr	93.7
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	93.63
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	93.63
PRK10901	427	16S rRNA methyltransferase B; Provisional	93.62
COG1028	251	FabG Dehydrogenases with different specificities (	93.61
PRK00048	257	dihydrodipicolinate reductase; Provisional	93.6
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	93.58
KOG1014|consensus	312		93.54
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.51
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	93.47
PRK13255	218	thiopurine S-methyltransferase; Reviewed	93.47
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	93.44
PLN03139	386	formate dehydrogenase; Provisional	93.42
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	93.42
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	93.37
PRK13243	333	glyoxylate reductase; Reviewed	93.34
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	93.34
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	93.31
PRK07340	304	ornithine cyclodeaminase; Validated	93.28
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	93.23
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	93.21
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	93.2
PRK08317	241	hypothetical protein; Provisional	93.2
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.19
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	93.19
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	93.17
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	93.14

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=3.2e-59  Score=430.95  Aligned_cols=307  Identities=26%  Similarity=0.398  Sum_probs=277.1

Q ss_pred             ccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCC
Q psy2960          70 SYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDV  149 (405)
Q Consensus        70 ~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v  149 (405)
                      |++|||+++.++++|   ++++++|.|+|+++||+|+|+|||+|++|+|.+.|.++.. .+|++||||.+|+|+++|++|
T Consensus         1 ~~~mkA~~~~~~~~p---l~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~~-~~P~ipGHEivG~V~~vG~~V   76 (339)
T COG1064           1 MMTMKAAVLKKFGQP---LEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVP-KLPLIPGHEIVGTVVEVGEGV   76 (339)
T ss_pred             CcceEEEEEccCCCC---ceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCCC-CCCccCCcceEEEEEEecCCC
Confidence            578999999999998   8999999999999999999999999999999999999875 599999999999999999999


Q ss_pred             CCCCCCCEEEe-cC--------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHH
Q psy2960         150 SSLAVGDHVIP-DT--------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAY  202 (405)
Q Consensus       150 ~~~~~GdrV~~-~~--------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~  202 (405)
                      ++|++||||.. +.                          ..+|+|+||+++++++++++|+++++++||.+.|++.|.|
T Consensus        77 ~~~k~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~~gy~~~GGyaeyv~v~~~~~~~iP~~~d~~~aApllCaGiT~y  156 (339)
T COG1064          77 TGLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITGYTTDGGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTY  156 (339)
T ss_pred             ccCCCCCEEEecCccCCCCCCccccCcccccCCCccccceeecCcceeEEEEchHHeEECCCCCChhhhhhhhcCeeeEe
Confidence            99999999987 31                          2369999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-Hhhhc
Q psy2960         203 RMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDA  279 (405)
Q Consensus       203 ~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t  279 (405)
                      .+|+. .+++||++|+|+|+ ||+|++++|+|+++|++|+++.+++++    ++.++++|++++++..+  ..+ +++. 
T Consensus       157 ~alk~-~~~~pG~~V~I~G~-GGlGh~avQ~Aka~ga~Via~~~~~~K----~e~a~~lGAd~~i~~~~~~~~~~~~~~-  229 (339)
T COG1064         157 RALKK-ANVKPGKWVAVVGA-GGLGHMAVQYAKAMGAEVIAITRSEEK----LELAKKLGADHVINSSDSDALEAVKEI-  229 (339)
T ss_pred             eehhh-cCCCCCCEEEEECC-cHHHHHHHHHHHHcCCeEEEEeCChHH----HHHHHHhCCcEEEEcCCchhhHHhHhh-
Confidence            99988 89999999999999 799999999999999999999877554    78999999999999753  222 4332 


Q ss_pred             CCCCCcEEEECCCchhHHHHHHhcccCCEEEEEeccC-CCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHH
Q psy2960         280 SIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMS-REPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNE  358 (405)
Q Consensus       280 ~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~  358 (405)
                          +|++||+++...+..++++|+++|+++.+|... .....++...++.+++++.|+..++           ..++++
T Consensus       230 ----~d~ii~tv~~~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~-----------~~d~~e  294 (339)
T COG1064         230 ----ADAIIDTVGPATLEPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGT-----------RADLEE  294 (339)
T ss_pred             ----CcEEEECCChhhHHHHHHHHhcCCEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecCC-----------HHHHHH
Confidence                899999999666678999999999999999764 3334566777888999999999876           456889


Q ss_pred             HHHHHHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEec
Q psy2960         359 LTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       359 ~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                      ++++..+|+++|.+.+.++++|+++||+.|.  +++..|++||++.
T Consensus       295 ~l~f~~~g~Ikp~i~e~~~l~~in~A~~~m~--~g~v~gR~Vi~~~  338 (339)
T COG1064         295 ALDFAAEGKIKPEILETIPLDEINEAYERME--KGKVRGRAVIDMS  338 (339)
T ss_pred             HHHHHHhCCceeeEEeeECHHHHHHHHHHHH--cCCeeeEEEecCC
Confidence            9999999999998778999999999999999  9999999999875

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=100.00  E-value=7.9e-57  Score=425.25  Aligned_cols=320  Identities=27%  Similarity=0.395  Sum_probs=284.0

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||++++.+++.|.. +++++.|.|+|++|||||||+|+|||+.|++.+.|..+...++|+++|.|++|+|+++|++|++|
T Consensus         1 mka~~~~~~g~~~~-l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~   79 (326)
T COG0604           1 MKAVVVEEFGGPEV-LKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGF   79 (326)
T ss_pred             CeEEEEeccCCCce-eEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCc
Confidence            78999999999866 99999999999999999999999999999999999744334689999999999999999999999


Q ss_pred             CCCCEEEecC-C-CCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHH
Q psy2960         153 AVGDHVIPDT-Q-HLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNV  230 (405)
Q Consensus       153 ~~GdrV~~~~-~-~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~a  230 (405)
                      ++||||+... . ..|+|+||+.++++.++++|+++|+++||+++++++|||+++....++++|++|||+||+|+||+++
T Consensus        80 ~~GdrV~~~~~~~~~G~~AEy~~v~a~~~~~~P~~ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~a  159 (326)
T COG0604          80 KVGDRVAALGGVGRDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAA  159 (326)
T ss_pred             CCCCEEEEccCCCCCCcceeEEEecHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHH
Confidence            9999999983 2 4699999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCC
Q psy2960         231 IQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKG  307 (405)
Q Consensus       231 iqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G  307 (405)
                      +|+||++|+.+++++++.++    .+.++++|+|+++++++  +.+ ++++|+++++|+|+|++|++.+..++++|+++|
T Consensus       160 iQlAk~~G~~~v~~~~s~~k----~~~~~~lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D~vG~~~~~~~l~~l~~~G  235 (326)
T COG0604         160 IQLAKALGATVVAVVSSSEK----LELLKELGADHVINYREEDFVEQVRELTGGKGVDVVLDTVGGDTFAASLAALAPGG  235 (326)
T ss_pred             HHHHHHcCCcEEEEecCHHH----HHHHHhcCCCEEEcCCcccHHHHHHHHcCCCCceEEEECCCHHHHHHHHHHhccCC
Confidence            99999999888888866543    45889999999999754  777 999999999999999999999999999999999


Q ss_pred             EEEEEeccC-CCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHHH
Q psy2960         308 VMVTYGGMS-REPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALM  386 (405)
Q Consensus       308 ~~v~~g~~~-~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~  386 (405)
                      +++.+|... .....++...++.+.++..++.....   .  ++...+.++++.+++++|.+++.+..+||+++..+|..
T Consensus       236 ~lv~ig~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~---~--~~~~~~~~~~l~~~~~~g~l~~~i~~~~~l~e~~~a~a  310 (326)
T COG0604         236 RLVSIGALSGGPPVPLNLLPLLGKRLTLRGVTLGSR---D--PEALAEALAELFDLLASGKLKPVIDRVYPLAEAPAAAA  310 (326)
T ss_pred             EEEEEecCCCCCccccCHHHHhhccEEEEEecceec---c--hHHHHHHHHHHHHHHHcCCCcceeccEechhhhHHHHH
Confidence            999999776 34445566667778888888876643   1  25667889999999999999999999999999777777


Q ss_pred             HHhhhcCCCCceEEEEe
Q psy2960         387 NTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       387 ~~~~~~~~~~gKvvl~~  403 (405)
                      +... .+++.||+||++
T Consensus       311 ~~~~-~~~~~GKvvl~~  326 (326)
T COG0604         311 HLLL-ERRTTGKVVLKV  326 (326)
T ss_pred             HHHc-ccCCcceEEEeC
Confidence            6662 248899999975

>KOG1202|consensus

Probab=100.00  E-value=1.2e-58  Score=461.93  Aligned_cols=347  Identities=18%  Similarity=0.189  Sum_probs=312.0

Q ss_pred             cchhhhhhhhhccceeeeecchhhhhhhhCCcccchhHHHHHHHhhhcccccceeeccccccCCcccceeEEEEccCCCC
Q psy2960           5 KGLFMNVFKTYQAGSLRFISSKKLVFHEFGEPAKVVNVVEEELLKVMSTELCTYISLLDTSARGFSYLANKLVYNQHGTP   84 (405)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~   84 (405)
                      |||++|||++|+||||||+.......+.+ ..+.+.++.++|+++|                                  
T Consensus      1384 ~DLv~NvyrdGaWGs~RHl~le~~~~~~~-~ehAfvntLtrGDlsS---------------------------------- 1428 (2376)
T KOG1202|consen 1384 KDLVMNVYRDGAWGSFRHLKLEEDKPELP-VEHAFVNTLTRGDLSS---------------------------------- 1428 (2376)
T ss_pred             hhhhhhhhhcCcccceeeeEecccCCCcc-hHHHHHHHhhhccccc----------------------------------
Confidence            79999999999999999998654333333 2255788888888888                                  


Q ss_pred             ccceEeeeecCC---CCCCCeEEEEEEEeecChhhhhhhcccCCCC------CCCCCCCccceEEEEEEEcCCCCCCCCC
Q psy2960          85 LRVVTVENETLN---SVQKHEVVVKMLVAPVNPADINTIQGVYPIK------PTLPAVPGFEGVGEVVEVGSDVSSLAVG  155 (405)
Q Consensus        85 ~~~l~~~~~~~p---~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~------~~~p~~lG~E~~G~V~~vG~~v~~~~~G  155 (405)
                         ++|.+.|..   +..++.-+.-|.|+.||++|++.+.|+++..      ....+++|.||+|+-..          |
T Consensus      1429 ---lrWies~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGRd~~----------G 1495 (2376)
T KOG1202|consen 1429 ---LRWIESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGRDAS----------G 1495 (2376)
T ss_pred             ---eeeeecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccccCC----------C
Confidence               888888875   4578889999999999999999999987643      13448999999998665          9


Q ss_pred             CEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHH
Q psy2960         156 DHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIAR  235 (405)
Q Consensus       156 drV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~  235 (405)
                      .|||++.+ --++++.+.++.+++|.+|++|+++||+++|+.|.||||||..++..++|+++|||+++||||++||.+|.
T Consensus      1496 rRvM~mvp-AksLATt~l~~rd~lWevP~~WTleeAstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiAL 1574 (2376)
T KOG1202|consen 1496 RRVMGMVP-AKSLATTVLASRDFLWEVPSKWTLEEASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIAL 1574 (2376)
T ss_pred             cEEEEeee-hhhhhhhhhcchhhhhhCCcccchhhcccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHHH
Confidence            99999954 47899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEE
Q psy2960         236 HWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTY  312 (405)
Q Consensus       236 ~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~  312 (405)
                      +.||+||+|++|.|++++.+..++++...++.|++|  |++ ++..|+|+|+|+|+|++..+.++++++||+.+|||.++
T Consensus      1575 a~G~~VFTTVGSaEKRefL~~rFPqLqe~~~~NSRdtsFEq~vl~~T~GrGVdlVLNSLaeEkLQASiRCLa~~GRFLEI 1654 (2376)
T KOG1202|consen 1575 AHGCTVFTTVGSAEKREFLLKRFPQLQETNFANSRDTSFEQHVLWHTKGRGVDLVLNSLAEEKLQASIRCLALHGRFLEI 1654 (2376)
T ss_pred             HcCCEEEEecCcHHHHHHHHHhchhhhhhcccccccccHHHHHHHHhcCCCeeeehhhhhHHHHHHHHHHHHhcCeeeee
Confidence            999999999999999999999999999999999987  888 99999999999999999999999999999999999999


Q ss_pred             eccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHHhhhc
Q psy2960         313 GGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQ  392 (405)
Q Consensus       313 g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~  392 (405)
                      |+.+-+..+...+..+.||.++||+.+++.+....  +++.+....+.+.|++|.++|+++++|+-+++++|||+|.  +
T Consensus      1655 GKfDLSqNspLGMavfLkNvsfHGiLLDsvmege~--e~~~ev~~Lv~eGIksGvV~PL~ttvF~~~qvE~AFRfMa--s 1730 (2376)
T KOG1202|consen 1655 GKFDLSQNSPLGMAVFLKNVSFHGILLDSVMEGEE--EMWREVAALVAEGIKSGVVRPLPTTVFHGQQVEDAFRFMA--S 1730 (2376)
T ss_pred             cceecccCCcchhhhhhcccceeeeehhhhhcCcH--HHHHHHHHHHHhhhccCceeccccccccHHHHHHHHHHHh--c
Confidence            99887777667788899999999999999887553  6667777777888889999999999999999999999999  9


Q ss_pred             CCCCceEEEEec
Q psy2960         393 GKSGVKYYIDFR  404 (405)
Q Consensus       393 ~~~~gKvvl~~~  404 (405)
                      |+|+||||+++.
T Consensus      1731 GKHIGKVvikvr 1742 (2376)
T KOG1202|consen 1731 GKHIGKVVIKVR 1742 (2376)
T ss_pred             cCccceEEEEEc
Confidence            999999999985

>KOG1197|consensus

Probab=100.00  E-value=1.2e-55  Score=379.93  Aligned_cols=327  Identities=22%  Similarity=0.279  Sum_probs=295.4

Q ss_pred             CCcccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEc
Q psy2960          67 RGFSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVG  146 (405)
Q Consensus        67 ~~~~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG  146 (405)
                      +..|+..|.+++++.|.. ++++|++.|.|+|.|+|.+||..|+|+|+.|.+.+.|-+. .++.|++||.|++|+|+++|
T Consensus         3 ~~~p~~~k~i~v~e~Ggy-dvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~-~~plPytpGmEaaGvVvAvG   80 (336)
T KOG1197|consen    3 AASPPLLKCIVVTEFGGY-DVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYD-PAPLPYTPGMEAAGVVVAVG   80 (336)
T ss_pred             CCCCchheEEEEeccCCc-ceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccC-CCCCCcCCCcccceEEEEec
Confidence            356888999999999987 7899999999999999999999999999999999999884 35789999999999999999


Q ss_pred             CCCCCCCCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHH
Q psy2960         147 SDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSAC  226 (405)
Q Consensus       147 ~~v~~~~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~v  226 (405)
                      ++|+++++||||+... ..|.|+|++.+|...+.++|+.+++++||++...++|||.-+++..+++||++||||.|+|||
T Consensus        81 ~gvtdrkvGDrVayl~-~~g~yaee~~vP~~kv~~vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGV  159 (336)
T KOG1197|consen   81 EGVTDRKVGDRVAYLN-PFGAYAEEVTVPSVKVFKVPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGV  159 (336)
T ss_pred             CCccccccccEEEEec-cchhhheeccccceeeccCCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccH
Confidence            9999999999999884 679999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeCh--hhHHH-HhhhcCCCCCcEEEECCCchhHHHHHHhc
Q psy2960         227 GQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-ISRDASIPKPKLALNCVGGNSATNLLRTL  303 (405)
Q Consensus       227 G~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~--~d~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l  303 (405)
                      |++++|++++.|+.++++++++++    ++.+++.|++|.+++  +|+.. +.++|+|+|+|+++|++|.+.+..++.+|
T Consensus       160 Glll~Ql~ra~~a~tI~~asTaeK----~~~akenG~~h~I~y~~eD~v~~V~kiTngKGVd~vyDsvG~dt~~~sl~~L  235 (336)
T KOG1197|consen  160 GLLLCQLLRAVGAHTIATASTAEK----HEIAKENGAEHPIDYSTEDYVDEVKKITNGKGVDAVYDSVGKDTFAKSLAAL  235 (336)
T ss_pred             HHHHHHHHHhcCcEEEEEeccHHH----HHHHHhcCCcceeeccchhHHHHHHhccCCCCceeeeccccchhhHHHHHHh
Confidence            999999999999999999988654    789999999999986  56766 99999999999999999999999999999


Q ss_pred             ccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHH
Q psy2960         304 VSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQE  383 (405)
Q Consensus       304 ~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~  383 (405)
                      ++.|.++.+|..++...+++...+-.|.+++..-.+..+   ...+.++.....+++.++.+|.+++.+.++|||+++.+
T Consensus       236 k~~G~mVSfG~asgl~~p~~l~~ls~k~l~lvrpsl~gY---i~g~~el~~~v~rl~alvnsg~lk~~I~~~ypls~vad  312 (336)
T KOG1197|consen  236 KPMGKMVSFGNASGLIDPIPLNQLSPKALQLVRPSLLGY---IDGEVELVSYVARLFALVNSGHLKIHIDHVYPLSKVAD  312 (336)
T ss_pred             ccCceEEEeccccCCCCCeehhhcChhhhhhccHhhhcc---cCCHHHHHHHHHHHHHHhhcCccceeeeeecchHHHHH
Confidence            999999999987776666776666667776654333322   22346777788999999999999999999999999999


Q ss_pred             HHHHHhhhcCCCCceEEEEecC
Q psy2960         384 ALMNTMSIQGKSGVKYYIDFRQ  405 (405)
Q Consensus       384 A~~~~~~~~~~~~gKvvl~~~~  405 (405)
                      |+..++  +.+..||+++.+.+
T Consensus       313 A~~die--srktvGkvlLlp~~  332 (336)
T KOG1197|consen  313 AHADIE--SRKTVGKVLLLPGP  332 (336)
T ss_pred             HHHHHH--hhhccceEEEeCCc
Confidence            999999  89999999998753

>KOG0025|consensus

Probab=100.00  E-value=1.4e-50  Score=354.86  Aligned_cols=339  Identities=53%  Similarity=0.854  Sum_probs=309.7

Q ss_pred             cccCCcccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEE
Q psy2960          64 TSARGFSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVV  143 (405)
Q Consensus        64 ~~~~~~~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~  143 (405)
                      .+...++...|++++.++|+|.+++++.+.++|+...++|+||..|+.|||+|+..++|.||..|++|.+-|.|++|+|+
T Consensus        11 ssa~q~~~~~kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv   90 (354)
T KOG0025|consen   11 SSASQMPARSKALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVV   90 (354)
T ss_pred             ccccccccccceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEE
Confidence            34456788899999999999999999999999998888899999999999999999999999999999999999999999


Q ss_pred             EEcCCCCCCCCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCC
Q psy2960         144 EVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGAN  223 (405)
Q Consensus       144 ~vG~~v~~~~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~  223 (405)
                      .+|+++++|++||+|+......|.|++|.+.+++.++++++.++++.||++.+..+|||..|.+.-++++||+|.-.||.
T Consensus        91 ~vGs~vkgfk~Gd~VIp~~a~lGtW~t~~v~~e~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNgan  170 (354)
T KOG0025|consen   91 AVGSNVKGFKPGDWVIPLSANLGTWRTEAVFSESDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGAN  170 (354)
T ss_pred             EecCCcCccCCCCeEeecCCCCccceeeEeecccceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcc
Confidence            99999999999999999988889999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH--Hhhh-cCCCCCcEEEECCCchhHHHHH
Q psy2960         224 SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN--ISRD-ASIPKPKLALNCVGGNSATNLL  300 (405)
Q Consensus       224 G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~--i~~~-t~g~g~Dvvld~~g~~~~~~~~  300 (405)
                      ++||++.+|+|+++|.+-+-++|+++..++..+.++.+||++|+..+++..  .++. ....++.+.|||+|+.......
T Consensus       171 S~VG~~ViQlaka~GiktinvVRdR~~ieel~~~Lk~lGA~~ViTeeel~~~~~~k~~~~~~~prLalNcVGGksa~~ia  250 (354)
T KOG0025|consen  171 SGVGQAVIQLAKALGIKTINVVRDRPNIEELKKQLKSLGATEVITEEELRDRKMKKFKGDNPRPRLALNCVGGKSATEIA  250 (354)
T ss_pred             cHHHHHHHHHHHHhCcceEEEeecCccHHHHHHHHHHcCCceEecHHHhcchhhhhhhccCCCceEEEeccCchhHHHHH
Confidence            999999999999999999999999999999999999999999998765432  2222 3456789999999999999999


Q ss_pred             HhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhh
Q psy2960         301 RTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKN  380 (405)
Q Consensus       301 ~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~  380 (405)
                      +.|.+||+++.+|+.+..+.+++...+++|+++++|+|+..|......|++..++++++.+++++|+|+.......+|++
T Consensus       251 r~L~~GgtmvTYGGMSkqPv~~~ts~lIFKdl~~rGfWvt~W~~~~~~pe~~~~~i~~~~~l~~~G~i~~~~~e~v~L~~  330 (354)
T KOG0025|consen  251 RYLERGGTMVTYGGMSKQPVTVPTSLLIFKDLKLRGFWVTRWKKEHKSPEERKEMIDELCDLYRRGKLKAPNCEKVPLAD  330 (354)
T ss_pred             HHHhcCceEEEecCccCCCcccccchheeccceeeeeeeeehhhccCCcHHHHHHHHHHHHHHHcCeeccccceeeechh
Confidence            99999999999999999999999999999999999999999998887778999999999999999999998888899999


Q ss_pred             HHHHHHHHhhhcCCCCceEEEEe
Q psy2960         381 FQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       381 ~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      ...|++...+ .-...||-+|.+
T Consensus       331 ~~tald~~L~-~~~~~~Kq~i~~  352 (354)
T KOG0025|consen  331 HKTALDAALS-KFGKSGKQIIVL  352 (354)
T ss_pred             hhHHHHHHHH-HhccCCceEEEe
Confidence            8888876552 223335666654

>KOG0024|consensus

Probab=100.00  E-value=1.2e-50  Score=362.46  Aligned_cols=311  Identities=22%  Similarity=0.299  Sum_probs=267.1

Q ss_pred             ccceeEEEEccCCCCccceEeeeecCCCC-CCCeEEEEEEEeecChhhhhhhcccCCCC--CCCCCCCccceEEEEEEEc
Q psy2960          70 SYLANKLVYNQHGTPLRVVTVENETLNSV-QKHEVVVKMLVAPVNPADINTIQGVYPIK--PTLPAVPGFEGVGEVVEVG  146 (405)
Q Consensus        70 ~~~~~a~~~~~~g~~~~~l~~~~~~~p~~-~~~eVlVkv~a~gi~~~D~~~~~g~~~~~--~~~p~~lG~E~~G~V~~vG  146 (405)
                      ..+|+|+++.++++    +++++.|.|++ .|+||+|++.++|||++|+|++.......  .+.|+++|||.+|+|+++|
T Consensus         2 ~~~~~A~vl~g~~d----i~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG   77 (354)
T KOG0024|consen    2 AADNLALVLRGKGD----IRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVG   77 (354)
T ss_pred             CcccceeEEEccCc----eeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhc
Confidence            35799999999988    89999999987 99999999999999999999997543322  3579999999999999999


Q ss_pred             CCCCCCCCCCEEEecC---------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHH
Q psy2960         147 SDVSSLAVGDHVIPDT---------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPC  199 (405)
Q Consensus       147 ~~v~~~~~GdrV~~~~---------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~  199 (405)
                      +.|+++++||||+.-+                           +.+|++++|++.++++|+++||++|++++|.+. +++
T Consensus        78 ~~Vk~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~atpp~~G~la~y~~~~~dfc~KLPd~vs~eeGAl~e-PLs  156 (354)
T KOG0024|consen   78 DEVKHLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFCATPPVDGTLAEYYVHPADFCYKLPDNVSFEEGALIE-PLS  156 (354)
T ss_pred             ccccccccCCeEEecCCCccccchhhhCcccccCCccccccCCCcCCceEEEEEechHheeeCCCCCchhhccccc-chh
Confidence            9999999999999653                           236999999999999999999999999999998 599


Q ss_pred             HHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh------HH
Q psy2960         200 TAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE------LR  273 (405)
Q Consensus       200 ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d------~~  273 (405)
                      +++||.+. +++++|++|||.|| |++|+.+...|+++||..++++   +-.+.|++.++++|++.+.+...      +.
T Consensus       157 V~~HAcr~-~~vk~Gs~vLV~GA-GPIGl~t~l~Aka~GA~~VVi~---d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~  231 (354)
T KOG0024|consen  157 VGVHACRR-AGVKKGSKVLVLGA-GPIGLLTGLVAKAMGASDVVIT---DLVANRLELAKKFGATVTDPSSHKSSPQELA  231 (354)
T ss_pred             hhhhhhhh-cCcccCCeEEEECC-cHHHHHHHHHHHHcCCCcEEEe---ecCHHHHHHHHHhCCeEEeeccccccHHHHH
Confidence            99999976 99999999999999 9999999999999999888887   56678899999999999886432      22


Q ss_pred             H-HhhhcCCCCCcEEEECCCchhHH-HHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHH
Q psy2960         274 N-ISRDASIPKPKLALNCVGGNSAT-NLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAE  351 (405)
Q Consensus       274 ~-i~~~t~g~g~Dvvld~~g~~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~  351 (405)
                      + +.+..+...+|+.|||+|.+... .++..++++|+++..| ......+++..+...|++++.|++-+.          
T Consensus       232 ~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg-~g~~~~~fpi~~v~~kE~~~~g~fry~----------  300 (354)
T KOG0024|consen  232 ELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVLVG-MGAEEIQFPIIDVALKEVDLRGSFRYC----------  300 (354)
T ss_pred             HHHHhhccccCCCeEEEccCchHHHHHHHHHhccCCEEEEec-cCCCccccChhhhhhheeeeeeeeeec----------
Confidence            3 44444445699999999987765 5799999999977776 455567788888899999999988653          


Q ss_pred             HHHHHHHHHHHHHcCccc--CCcceeeehhhHHHHHHHHhhhcCC-CCceEEEEec
Q psy2960         352 RKSMMNELTEMMRTGKLA--APAHKFVTLKNFQEALMNTMSIQGK-SGVKYYIDFR  404 (405)
Q Consensus       352 ~~~~~~~~~~~~~~g~l~--~~~~~~~~~~~~~~A~~~~~~~~~~-~~gKvvl~~~  404 (405)
                       ...+..+++++++|++.  +++++.|+++++.+||+.+.  .++ ..-|++|+.+
T Consensus       301 -~~~y~~ai~li~sGki~~k~lIT~r~~~~~~~eAf~~~~--~~~~~~iKv~i~~~  353 (354)
T KOG0024|consen  301 -NGDYPTAIELVSSGKIDVKPLITHRYKFDDADEAFETLQ--HGEEGVIKVIITGP  353 (354)
T ss_pred             -cccHHHHHHHHHcCCcCchhheecccccchHHHHHHHHH--hCcCCceEEEEeCC
Confidence             34588899999999976  56899999999999999998  444 3679988764

>KOG0023|consensus

Probab=100.00  E-value=6.2e-50  Score=356.91  Aligned_cols=314  Identities=21%  Similarity=0.320  Sum_probs=270.7

Q ss_pred             CCcccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEc
Q psy2960          67 RGFSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVG  146 (405)
Q Consensus        67 ~~~~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG  146 (405)
                      ...|.++++|.+..+++. ..+++.+++.|+++++||+|+|.|||||++|+|.+.|.++. ..+|.++|||.+|+|+++|
T Consensus         4 ~~~p~k~~g~~~~~~~G~-l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~-s~~PlV~GHEiaG~VvkvG   81 (360)
T KOG0023|consen    4 MSIPEKQFGWAARDPSGV-LSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGL-SKYPLVPGHEIAGVVVKVG   81 (360)
T ss_pred             ccCchhhEEEEEECCCCC-CCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCc-ccCCccCCceeeEEEEEEC
Confidence            457899999999999875 23677999999999999999999999999999999999998 6899999999999999999


Q ss_pred             CCCCCCCCCCEEEecC----------------------------------CCCCcccceEeecccceEEcCCCCChhhhc
Q psy2960         147 SDVSSLAVGDHVIPDT----------------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEIS  192 (405)
Q Consensus       147 ~~v~~~~~GdrV~~~~----------------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa  192 (405)
                      ++|++|++||||-.=.                                  ...|+|++|+++++.++++||+++.++.||
T Consensus        82 s~V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t~~g~~~DGt~~~ggf~~~~~v~~~~a~kIP~~~pl~~aA  161 (360)
T KOG0023|consen   82 SNVTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFTYNGVYHDGTITQGGFQEYAVVDEVFAIKIPENLPLASAA  161 (360)
T ss_pred             CCcccccccCeeeeeEEeccccCccccccCCcccCCceeEeccccccCCCCccCccceeEEEeeeeEEECCCCCChhhcc
Confidence            9999999999996321                                  134779999999999999999999999999


Q ss_pred             cCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChh-h
Q psy2960         193 GITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE-E  271 (405)
Q Consensus       193 ~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~-d  271 (405)
                      .+.|++.|+|.+|.. .++.||++|.|.|+ ||+|.+++|+||++|.+|+++.++..+   +.+.++.||||..++.. |
T Consensus       162 PlLCaGITvYspLk~-~g~~pG~~vgI~Gl-GGLGh~aVq~AKAMG~rV~vis~~~~k---keea~~~LGAd~fv~~~~d  236 (360)
T KOG0023|consen  162 PLLCAGITVYSPLKR-SGLGPGKWVGIVGL-GGLGHMAVQYAKAMGMRVTVISTSSKK---KEEAIKSLGADVFVDSTED  236 (360)
T ss_pred             chhhcceEEeehhHH-cCCCCCcEEEEecC-cccchHHHHHHHHhCcEEEEEeCCchh---HHHHHHhcCcceeEEecCC
Confidence            999999999999987 78999999999999 669999999999999999999877533   45777889999998765 3


Q ss_pred             --HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhcc
Q psy2960         272 --LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKE  348 (405)
Q Consensus       272 --~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~  348 (405)
                        +-+ +.+.|+ .++|-|.+- ....+..++++++++|++|.+|.+.. +..++...+..+.+++.|+..++       
T Consensus       237 ~d~~~~~~~~~d-g~~~~v~~~-a~~~~~~~~~~lk~~Gt~V~vg~p~~-~~~~~~~~lil~~~~I~GS~vG~-------  306 (360)
T KOG0023|consen  237 PDIMKAIMKTTD-GGIDTVSNL-AEHALEPLLGLLKVNGTLVLVGLPEK-PLKLDTFPLILGRKSIKGSIVGS-------  306 (360)
T ss_pred             HHHHHHHHHhhc-Ccceeeeec-cccchHHHHHHhhcCCEEEEEeCcCC-cccccchhhhcccEEEEeecccc-------
Confidence              333 555543 245555544 34455678999999999999996554 77788888889999999999887       


Q ss_pred             HHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEec
Q psy2960         349 SAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       349 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                          +...++++++.++|.+++ +.+..+++++++||+.|+  +++..++.||++.
T Consensus       307 ----~ket~E~Ldf~a~~~ik~-~IE~v~~~~v~~a~erm~--kgdV~yRfVvD~s  355 (360)
T KOG0023|consen  307 ----RKETQEALDFVARGLIKS-PIELVKLSEVNEAYERME--KGDVRYRFVVDVS  355 (360)
T ss_pred             ----HHHHHHHHHHHHcCCCcC-ceEEEehhHHHHHHHHHH--hcCeeEEEEEEcc
Confidence                455788999999999997 567899999999999999  9999999999874

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=100.00  E-value=2.8e-50  Score=363.36  Aligned_cols=310  Identities=25%  Similarity=0.297  Sum_probs=272.0

Q ss_pred             cceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCC
Q psy2960          71 YLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVS  150 (405)
Q Consensus        71 ~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~  150 (405)
                      +++|++++.++++|   ++++++.+++|++||||||+.|+|+|++|.+..+|..|.  .+|.+||||++|+|++||++|+
T Consensus         1 mk~~aAV~~~~~~P---l~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~--~~P~vLGHEgAGiVe~VG~gVt   75 (366)
T COG1062           1 MKTRAAVAREAGKP---LEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPE--GFPAVLGHEGAGIVEAVGEGVT   75 (366)
T ss_pred             CCceEeeeecCCCC---eEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCCC--CCceecccccccEEEEecCCcc
Confidence            46899999999998   999999999999999999999999999999999999887  4999999999999999999999


Q ss_pred             CCCCCCEEEecC-----------------------------------------------CCCCcccceEeecccceEEcC
Q psy2960         151 SLAVGDHVIPDT-----------------------------------------------QHLGTWRNYGKFNHDVLMKVP  183 (405)
Q Consensus       151 ~~~~GdrV~~~~-----------------------------------------------~~~G~~a~~~~v~~~~~~~iP  183 (405)
                      +++|||+|+..+                                               ...++|+||.++++..+++++
T Consensus        76 ~vkpGDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~  155 (366)
T COG1062          76 SVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKID  155 (366)
T ss_pred             ccCCCCEEEEcccCCCCCCchhhCCCcccccchhhhcccccccCCceeeecCCcceeeeeccccchhheeecccceEECC
Confidence            999999999653                                               012599999999999999999


Q ss_pred             CCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC
Q psy2960         184 KDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA  263 (405)
Q Consensus       184 ~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~  263 (405)
                      ++.+++.++.+.|...|.+.+..+.+++++|++|.|.|. |++|++++|-|+..||..++.+   +..+.++++++++|+
T Consensus       156 ~~~p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~Gl-GgVGlaaI~gA~~agA~~IiAv---D~~~~Kl~~A~~fGA  231 (366)
T COG1062         156 PDAPLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGL-GGVGLAAIQGAKAAGAGRIIAV---DINPEKLELAKKFGA  231 (366)
T ss_pred             CCCCccceEEEeeeeccChHHhhhcccCCCCCeEEEEec-cHhHHHHHHHHHHcCCceEEEE---eCCHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999 9999999999999999888888   445678999999999


Q ss_pred             cEEeChhh---HHH-HhhhcCCCCCcEEEECCCchhH-HHHHHhcccCCEEEEEeccC-CCCcccCcccccccCeEEEEE
Q psy2960         264 DYVFTEEE---LRN-ISRDASIPKPKLALNCVGGNSA-TNLLRTLVSKGVMVTYGGMS-REPVQIPTSAFIFKDITLRGH  337 (405)
Q Consensus       264 ~~v~~~~d---~~~-i~~~t~g~g~Dvvld~~g~~~~-~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~k~~~~~g~  337 (405)
                      ++++|+.+   ..+ +.++|++ |+|++|||+|+... .+++.++.++|+.+.+|-.. ....+++..++... .++.|+
T Consensus       232 T~~vn~~~~~~vv~~i~~~T~g-G~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~~~~~i~~~~~~lv~g-r~~~Gs  309 (366)
T COG1062         232 THFVNPKEVDDVVEAIVELTDG-GADYAFECVGNVEVMRQALEATHRGGTSVIIGVAGAGQEISTRPFQLVTG-RVWKGS  309 (366)
T ss_pred             ceeecchhhhhHHHHHHHhcCC-CCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCCCCceeecChHHeecc-ceEEEE
Confidence            99999864   445 8888866 99999999998655 56899999999999999653 33345666666655 999999


Q ss_pred             ecchhhhhhccHHHHHHHHHHHHHHHHcCcccC--CcceeeehhhHHHHHHHHhhhcCCCCceEEEE
Q psy2960         338 WMTRWQKENKESAERKSMMNELTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYID  402 (405)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~  402 (405)
                      +++.-..        +.++.+++++..+|++..  .+++.++|+|++|||+.|.  +|+.+ |-||.
T Consensus       310 ~~G~~~p--------~~diP~lv~~y~~Gkl~~d~lvt~~~~Le~INeaf~~m~--~G~~I-R~Vi~  365 (366)
T COG1062         310 AFGGARP--------RSDIPRLVDLYMAGKLPLDRLVTHTIPLEDINEAFDLMH--EGKSI-RSVIR  365 (366)
T ss_pred             eecCCcc--------ccchhHHHHHHHcCCCchhHHhhccccHHHHHHHHHHHh--CCcee-eEEec
Confidence            9876322        456899999999999875  4889999999999999999  78766 44443

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=100.00  E-value=1.8e-48  Score=378.24  Aligned_cols=311  Identities=21%  Similarity=0.296  Sum_probs=264.4

Q ss_pred             eeEEEEccCCCC-----ccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcC
Q psy2960          73 ANKLVYNQHGTP-----LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGS  147 (405)
Q Consensus        73 ~~a~~~~~~g~~-----~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~  147 (405)
                      |||+++.++|.+     .+.+++++.|.|+|+++||+|||.++|||++|++.+.|.++.  .+|.++|||++|+|+++|+
T Consensus         1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~~--~~p~i~GhE~~G~V~~vG~   78 (371)
T cd08281           1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRPR--PLPMALGHEAAGVVVEVGE   78 (371)
T ss_pred             CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCCC--CCCccCCccceeEEEEeCC
Confidence            899999998864     256899999999999999999999999999999999987653  5689999999999999999


Q ss_pred             CCCCCCCCCEEEecCC-----------------------------------------------CCCcccceEeecccceE
Q psy2960         148 DVSSLAVGDHVIPDTQ-----------------------------------------------HLGTWRNYGKFNHDVLM  180 (405)
Q Consensus       148 ~v~~~~~GdrV~~~~~-----------------------------------------------~~G~~a~~~~v~~~~~~  180 (405)
                      +++++++||||++.+.                                               ..|+|+||+.++++.++
T Consensus        79 ~v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~g~G~~aey~~v~~~~~~  158 (371)
T cd08281          79 GVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEINHHLGVSAFAEYAVVSRRSVV  158 (371)
T ss_pred             CCCcCCCCCEEEEccCCCCCCCccccCCCcccccCccccccccccccCcccccccCcccccccCcccceeeEEecccceE
Confidence            9999999999986321                                               02689999999999999


Q ss_pred             EcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCcchHHHHHHHH
Q psy2960         181 KVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLK  259 (405)
Q Consensus       181 ~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~~~~~~~~~~~  259 (405)
                      ++|+++++++|++++++++|||+++...+++++|++|||+|+ |++|++++|+|+.+|++ |+++.++    +++++.++
T Consensus       159 ~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~-G~vG~~a~~lak~~G~~~Vi~~~~~----~~r~~~a~  233 (371)
T cd08281         159 KIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGL-GGVGLSALLGAVAAGASQVVAVDLN----EDKLALAR  233 (371)
T ss_pred             ECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEEcCC----HHHHHHHH
Confidence            999999999999999999999999887789999999999986 99999999999999995 6666533    45688899


Q ss_pred             HcCCcEEeChhh--HHH-HhhhcCCCCCcEEEECCCch-hHHHHHHhcccCCEEEEEeccCC-CCcccCcccccccCeEE
Q psy2960         260 SLGADYVFTEEE--LRN-ISRDASIPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSR-EPVQIPTSAFIFKDITL  334 (405)
Q Consensus       260 ~lg~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~k~~~~  334 (405)
                      ++|+++++++.+  +.+ +++.+++ ++|+||||+|.. .+..++++++++|+++.+|.... ....++...++.+++++
T Consensus       234 ~~Ga~~~i~~~~~~~~~~i~~~~~~-g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i  312 (371)
T cd08281         234 ELGATATVNAGDPNAVEQVRELTGG-GVDYAFEMAGSVPALETAYEITRRGGTTVTAGLPDPEARLSVPALSLVAEERTL  312 (371)
T ss_pred             HcCCceEeCCCchhHHHHHHHHhCC-CCCEEEECCCChHHHHHHHHHHhcCCEEEEEccCCCCceeeecHHHHhhcCCEE
Confidence            999999998653  445 7777766 899999999974 55678999999999999996543 23455666778899999


Q ss_pred             EEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccC--CcceeeehhhHHHHHHHHhhhcCCCCceEEE
Q psy2960         335 RGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYI  401 (405)
Q Consensus       335 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl  401 (405)
                      .|++...+.        ..+.+.++++++++|++++  .++++|+|+|+++||+.+.  +++..+|+|+
T Consensus       313 ~g~~~~~~~--------~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~--~~~~~~~vi~  371 (371)
T cd08281         313 KGSYMGSCV--------PRRDIPRYLALYLSGRLPVDKLLTHRLPLDEINEGFDRLA--AGEAVRQVIL  371 (371)
T ss_pred             EEEecCCCC--------hHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHh--CCCceeeeeC
Confidence            998876432        1345778889999999975  4789999999999999999  8888888764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=100.00  E-value=6.5e-48  Score=372.71  Aligned_cols=310  Identities=17%  Similarity=0.215  Sum_probs=263.3

Q ss_pred             ceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCC
Q psy2960          72 LANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSS  151 (405)
Q Consensus        72 ~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~  151 (405)
                      |||++++++++.+   +++++.|.|+|+++||+|||.++|||++|++.+.|.++.  .+|.++|||++|+|+++|+++++
T Consensus         1 ~mka~~~~~~~~~---~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~~--~~p~i~G~e~~G~V~~vG~~v~~   75 (358)
T TIGR03451         1 TVRGVIARSKGAP---VELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIND--EFPFLLGHEAAGVVEAVGEGVTD   75 (358)
T ss_pred             CcEEEEEccCCCC---CEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCccc--cCCcccccceEEEEEEeCCCCcc
Confidence            6999999999876   788999999999999999999999999999999887543  56899999999999999999999


Q ss_pred             CCCCCEEEecC---------------------------------------CCCCcccceEeecccceEEcCCCCChhhhc
Q psy2960         152 LAVGDHVIPDT---------------------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEIS  192 (405)
Q Consensus       152 ~~~GdrV~~~~---------------------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa  192 (405)
                      |++||||++.+                                       ...|+|+||+.+++..++++|+++++++|+
T Consensus        76 ~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~aa  155 (358)
T TIGR03451        76 VAPGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTDGTELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAAG  155 (358)
T ss_pred             cCCCCEEEEccCCCCCCChHHhCcCcccCcCccccccccccccCcccccccccccccceEEEehhheEECCCCCChhHhh
Confidence            99999998621                                       024899999999999999999999999999


Q ss_pred             cCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCcchHHHHHHHHHcCCcEEeChhh
Q psy2960         193 GITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEEE  271 (405)
Q Consensus       193 ~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d  271 (405)
                      .+++++.|||+++...+++++|++|||+|+ |++|++++|+|+.+|++ ++++.++    +++++.++++|+++++++++
T Consensus       156 ~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~-g~vG~~a~~~ak~~G~~~Vi~~~~~----~~~~~~~~~~Ga~~~i~~~~  230 (358)
T TIGR03451       156 LLGCGVMAGLGAAVNTGGVKRGDSVAVIGC-GGVGDAAIAGAALAGASKIIAVDID----DRKLEWAREFGATHTVNSSG  230 (358)
T ss_pred             hhcccchhhHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC----HHHHHHHHHcCCceEEcCCC
Confidence            999999999999887789999999999986 99999999999999997 6665433    44688889999999998653


Q ss_pred             --HHH-HhhhcCCCCCcEEEECCCch-hHHHHHHhcccCCEEEEEeccCCC-CcccCcccccccCeEEEEEecchhhhhh
Q psy2960         272 --LRN-ISRDASIPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSRE-PVQIPTSAFIFKDITLRGHWMTRWQKEN  346 (405)
Q Consensus       272 --~~~-i~~~t~g~g~Dvvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~k~~~~~g~~~~~~~~~~  346 (405)
                        +.+ +.+.+++.++|+||||+|++ ....++++++++|+++.+|..... ...++...++.+++++.+++.....   
T Consensus       231 ~~~~~~i~~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---  307 (358)
T TIGR03451       231 TDPVEAIRALTGGFGADVVIDAVGRPETYKQAFYARDLAGTVVLVGVPTPDMTLELPLLDVFGRGGALKSSWYGDCL---  307 (358)
T ss_pred             cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCCceeeccHHHHhhcCCEEEEeecCCCC---
Confidence              445 88888888999999999974 566789999999999999965332 2345555677899999988653211   


Q ss_pred             ccHHHHHHHHHHHHHHHHcCcccC--CcceeeehhhHHHHHHHHhhhcCCCCceEEEE
Q psy2960         347 KESAERKSMMNELTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYID  402 (405)
Q Consensus       347 ~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~  402 (405)
                           ..+.++++++++++|++++  .++++|+++|+++||+.+.  +++.. |++|.
T Consensus       308 -----~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~--~~~~~-k~~~~  357 (358)
T TIGR03451       308 -----PERDFPMLVDLYLQGRLPLDAFVTERIGLDDVEEAFDKMH--AGDVL-RSVVE  357 (358)
T ss_pred             -----cHHHHHHHHHHHHcCCCCchheEEEEecHHHHHHHHHHHh--CCCcc-eeEEe
Confidence                 1345788999999999976  4789999999999999998  77665 77775

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PLN02740 Alcohol dehydrogenase-like

Probab=100.00  E-value=1e-47  Score=374.08  Aligned_cols=314  Identities=20%  Similarity=0.280  Sum_probs=262.1

Q ss_pred             cccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCC
Q psy2960          69 FSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSD  148 (405)
Q Consensus        69 ~~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~  148 (405)
                      -|.+||++++.+++++   +.+++.|.|+|+++||+|||.++|||++|++.+.|.++....+|.++|||++|+|+++|++
T Consensus         7 ~~~~mka~~~~~~~~~---~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~   83 (381)
T PLN02740          7 KVITCKAAVAWGPGEP---LVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEG   83 (381)
T ss_pred             cceeeEEEEEecCCCC---cEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeCCC
Confidence            3678999999998865   7788999999999999999999999999999999876543467999999999999999999


Q ss_pred             CCCCCCCCEEEecCC--------------------------------------------------CCCcccceEeecccc
Q psy2960         149 VSSLAVGDHVIPDTQ--------------------------------------------------HLGTWRNYGKFNHDV  178 (405)
Q Consensus       149 v~~~~~GdrV~~~~~--------------------------------------------------~~G~~a~~~~v~~~~  178 (405)
                      +++|++||||++.+.                                                  ..|+|+||+.++.+.
T Consensus        84 v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~  163 (381)
T PLN02740         84 VEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSAC  163 (381)
T ss_pred             CCcCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEehHH
Confidence            999999999987521                                                  148999999999999


Q ss_pred             eEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCcchHHHHHH
Q psy2960         179 LMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSY  257 (405)
Q Consensus       179 ~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~~~~~~~~~  257 (405)
                      ++++|+++++++++.+++++.|||+++...+++++|++|||+|+ |++|++++|+|+.+|++ |+++.++    +++++.
T Consensus       164 ~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~-G~vG~~a~q~ak~~G~~~Vi~~~~~----~~r~~~  238 (381)
T PLN02740        164 VVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGL-GAVGLAVAEGARARGASKIIGVDIN----PEKFEK  238 (381)
T ss_pred             eEECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHCCCCcEEEEcCC----hHHHHH
Confidence            99999999999999999999999999877789999999999997 99999999999999995 7666543    346888


Q ss_pred             HHHcCCcEEeChhh----HHH-HhhhcCCCCCcEEEECCCch-hHHHHHHhcccC-CEEEEEeccCCC-CcccCcccccc
Q psy2960         258 LKSLGADYVFTEEE----LRN-ISRDASIPKPKLALNCVGGN-SATNLLRTLVSK-GVMVTYGGMSRE-PVQIPTSAFIF  329 (405)
Q Consensus       258 ~~~lg~~~v~~~~d----~~~-i~~~t~g~g~Dvvld~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~-~~~~~~~~~~~  329 (405)
                      ++++|+++++++++    +.+ +++.+++ ++|+||||+|+. .+..++++++++ |+++.+|..... ...++...+ .
T Consensus       239 a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~-g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~~~~~~~~~~~-~  316 (381)
T PLN02740        239 GKEMGITDFINPKDSDKPVHERIREMTGG-GVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKMLPLHPMEL-F  316 (381)
T ss_pred             HHHcCCcEEEecccccchHHHHHHHHhCC-CCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCCceecccHHHH-h
Confidence            99999999998643    455 7777766 899999999974 567789999996 999999965432 122332223 3


Q ss_pred             cCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccC--CcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         330 KDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       330 k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      +++++.|++...+..        ...+.++++++.+|.+++  .++++|+|+|+++||+.+.  +++. .|++|++
T Consensus       317 ~~~~i~g~~~~~~~~--------~~~~~~~~~~~~~g~i~~~~~it~~~~l~e~~~A~~~~~--~~~~-~k~~~~~  381 (381)
T PLN02740        317 DGRSITGSVFGDFKG--------KSQLPNLAKQCMQGVVNLDGFITHELPFEKINEAFQLLE--DGKA-LRCLLHL  381 (381)
T ss_pred             cCCeEEEEecCCCCc--------HHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHH--CCCc-eeEEEeC
Confidence            788999987654321        234788999999999875  4789999999999999998  6665 5999874

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=100.00  E-value=1.8e-47  Score=369.27  Aligned_cols=311  Identities=18%  Similarity=0.295  Sum_probs=261.3

Q ss_pred             CcccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcC
Q psy2960          68 GFSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGS  147 (405)
Q Consensus        68 ~~~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~  147 (405)
                      ..|++++++.+.+..+.   +++.++|.|+|+++||+|||.++|||++|++.+.|.++. ..+|.++|||++|+|+++|+
T Consensus         8 ~~~~~~~~~~~~~~~~~---l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~-~~~p~i~GhE~~G~V~~vG~   83 (360)
T PLN02586          8 EHPQKAFGWAARDPSGV---LSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGF-TRYPIVPGHEIVGIVTKLGK   83 (360)
T ss_pred             hchhheeEEEecCCCCC---ceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCC-CCCCccCCcceeEEEEEECC
Confidence            46788888888776554   778899999999999999999999999999999887653 35789999999999999999


Q ss_pred             CCCCCCCCCEEEecCC----------------------------------CCCcccceEeecccceEEcCCCCChhhhcc
Q psy2960         148 DVSSLAVGDHVIPDTQ----------------------------------HLGTWRNYGKFNHDVLMKVPKDIALTEISG  193 (405)
Q Consensus       148 ~v~~~~~GdrV~~~~~----------------------------------~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~  193 (405)
                      +|++|++||||+..+.                                  .+|+|+||++++++.++++|+++++++|++
T Consensus        84 ~v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~  163 (360)
T PLN02586         84 NVKKFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNYGGYSDMIVVDQHFVLRFPDNLPLDAGAP  163 (360)
T ss_pred             CCCccCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCCCccceEEEEchHHeeeCCCCCCHHHhhh
Confidence            9999999999974210                                  158999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHH
Q psy2960         194 ITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELR  273 (405)
Q Consensus       194 ~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~  273 (405)
                      +++++.|+|+++.....+++|++|||.|+ |++|++++|+|+.+|+++++++.+.++   +.+.++++|+++++++++..
T Consensus       164 l~~~~~ta~~al~~~~~~~~g~~VlV~G~-G~vG~~avq~Ak~~Ga~vi~~~~~~~~---~~~~~~~~Ga~~vi~~~~~~  239 (360)
T PLN02586        164 LLCAGITVYSPMKYYGMTEPGKHLGVAGL-GGLGHVAVKIGKAFGLKVTVISSSSNK---EDEAINRLGADSFLVSTDPE  239 (360)
T ss_pred             hhcchHHHHHHHHHhcccCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCcch---hhhHHHhCCCcEEEcCCCHH
Confidence            99999999999977667889999999887 999999999999999998887755432   34566789999999876533


Q ss_pred             HHhhhcCCCCCcEEEECCCch-hHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHH
Q psy2960         274 NISRDASIPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAER  352 (405)
Q Consensus       274 ~i~~~t~g~g~Dvvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~  352 (405)
                      .+.+.++  ++|+|||++|.. .+..++++++++|+++.+|... .+..++...++.++..+.+++.+.           
T Consensus       240 ~~~~~~~--~~D~vid~~g~~~~~~~~~~~l~~~G~iv~vG~~~-~~~~~~~~~~~~~~~~i~g~~~~~-----------  305 (360)
T PLN02586        240 KMKAAIG--TMDYIIDTVSAVHALGPLLGLLKVNGKLITLGLPE-KPLELPIFPLVLGRKLVGGSDIGG-----------  305 (360)
T ss_pred             HHHhhcC--CCCEEEECCCCHHHHHHHHHHhcCCcEEEEeCCCC-CCCccCHHHHHhCCeEEEEcCcCC-----------
Confidence            3555553  699999999975 4567899999999999998543 234556666677888888877543           


Q ss_pred             HHHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         353 KSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       353 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      .+.++++++++++|++++.+ ++|+|+|+++||+.+.  +++..||+||++
T Consensus       306 ~~~~~~~~~li~~g~i~~~~-~~~~l~~~~~A~~~~~--~~~~~gkvvi~~  353 (360)
T PLN02586        306 IKETQEMLDFCAKHNITADI-ELIRMDEINTAMERLA--KSDVRYRFVIDV  353 (360)
T ss_pred             HHHHHHHHHHHHhCCCCCcE-EEEeHHHHHHHHHHHH--cCCCcEEEEEEc
Confidence            23478899999999999765 6899999999999999  888889999986

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=100.00  E-value=1.7e-47  Score=365.09  Aligned_cols=316  Identities=24%  Similarity=0.419  Sum_probs=266.8

Q ss_pred             eeEEEEccCCCCc--cceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCC
Q psy2960          73 ANKLVYNQHGTPL--RVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVS  150 (405)
Q Consensus        73 ~~a~~~~~~g~~~--~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~  150 (405)
                      ||++++++++.|.  +.+++.+.|.|+|+++||+||+.++|+|++|++.+.|.++....+|.++|||++|+|+++|++++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~   80 (324)
T cd08291           1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGPL   80 (324)
T ss_pred             CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCcc
Confidence            7899999988642  34788899999999999999999999999999999987654446789999999999999999999


Q ss_pred             C-CCCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEe-CCCcHHHH
Q psy2960         151 S-LAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQN-GANSACGQ  228 (405)
Q Consensus       151 ~-~~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~-ga~G~vG~  228 (405)
                      + |++||+|++....+|+|+||+.++++.++++|+++++++|+++++.++|||..+ ..+.. ++++++|+ +++|++|+
T Consensus        81 ~~~~vGd~V~~~~~~~g~~a~~~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~-~~~~~-~~~~vlv~~~g~g~vG~  158 (324)
T cd08291          81 AQSLIGKRVAFLAGSYGTYAEYAVADAQQCLPLPDGVSFEQGASSFVNPLTALGML-ETARE-EGAKAVVHTAAASALGR  158 (324)
T ss_pred             ccCCCCCEEEecCCCCCcchheeeecHHHeEECCCCCCHHHHhhhcccHHHHHHHH-Hhhcc-CCCcEEEEccCccHHHH
Confidence            6 999999998743249999999999999999999999999999999999997554 44555 66777776 78899999


Q ss_pred             HHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChh--hHHH-HhhhcCCCCCcEEEECCCchhHHHHHHhccc
Q psy2960         229 NVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVS  305 (405)
Q Consensus       229 ~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~--d~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~  305 (405)
                      +++|+|+.+|+++++++++.    ++++.++++|++++++++  ++.+ +++.+.++++|++|||+|+......++++++
T Consensus       159 ~a~q~a~~~G~~vi~~~~~~----~~~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~~d~vid~~g~~~~~~~~~~l~~  234 (324)
T cd08291         159 MLVRLCKADGIKVINIVRRK----EQVDLLKKIGAEYVLNSSDPDFLEDLKELIAKLNATIFFDAVGGGLTGQILLAMPY  234 (324)
T ss_pred             HHHHHHHHcCCEEEEEeCCH----HHHHHHHHcCCcEEEECCCccHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHhhCC
Confidence            99999999999998887553    457888899999999865  4555 8888888899999999999888888999999


Q ss_pred             CCEEEEEeccCCCCc-ccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHH
Q psy2960         306 KGVMVTYGGMSREPV-QIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEA  384 (405)
Q Consensus       306 ~G~~v~~g~~~~~~~-~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A  384 (405)
                      +|+++.+|....... .++...++.+++++.+++...+....     ..+.++++.++++ |.+++.++++|+++|+.+|
T Consensus       235 ~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~i~~~~~l~~~~~a  308 (324)
T cd08291         235 GSTLYVYGYLSGKLDEPIDPVDLIFKNKSIEGFWLTTWLQKL-----GPEVVKKLKKLVK-TELKTTFASRYPLALTLEA  308 (324)
T ss_pred             CCEEEEEEecCCCCcccCCHHHHhhcCcEEEEEEHHHhhccc-----CHHHHHHHHHHHh-CccccceeeEEcHHHHHHH
Confidence            999999996544332 24455667899999999876653211     2456788888888 9999989999999999999


Q ss_pred             HHHHhhhcCCCCceEEEE
Q psy2960         385 LMNTMSIQGKSGVKYYID  402 (405)
Q Consensus       385 ~~~~~~~~~~~~gKvvl~  402 (405)
                      |+.+.  +++..||++|.
T Consensus       309 ~~~~~--~~~~~Gkvv~~  324 (324)
T cd08291         309 IAFYS--KNMSTGKKLLI  324 (324)
T ss_pred             HHHHH--hCCCCCeEEeC
Confidence            99999  88899999873

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=100.00  E-value=2.3e-47  Score=366.43  Aligned_cols=305  Identities=24%  Similarity=0.294  Sum_probs=258.2

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      |||+++++++.    +++++.|.|+|+++||+|||.++|||++|++.+.|.++....+|.++|||++|+|+++|++|+++
T Consensus         1 mka~~~~~~~~----l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~   76 (339)
T cd08239           1 MRGAVFPGDRT----VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHF   76 (339)
T ss_pred             CeEEEEecCCc----eEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccC
Confidence            79999987654    89999999999999999999999999999999877643222358999999999999999999999


Q ss_pred             CCCCEEEecCC---------------------------CCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHH
Q psy2960         153 AVGDHVIPDTQ---------------------------HLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRML  205 (405)
Q Consensus       153 ~~GdrV~~~~~---------------------------~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al  205 (405)
                      ++||||+..+.                           ..|+|+||+.++.+.++++|+++++++|+++++++.|||+++
T Consensus        77 ~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~g~~~~G~~ae~~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l  156 (339)
T cd08239          77 RVGDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGWNRDGGHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTAYHAL  156 (339)
T ss_pred             CCCCEEEECCCCCCCCChhhhCcCcccCcCcccccccCCCCcceeEEEechHHeEECCCCCCHHHhhhhcchHHHHHHHH
Confidence            99999987531                           258999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCcchHHHHHHHHHcCCcEEeChhhH-HH-HhhhcCCC
Q psy2960         206 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEEEL-RN-ISRDASIP  282 (405)
Q Consensus       206 ~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~-~~-i~~~t~g~  282 (405)
                      .. .++++|++|||+|+ |++|++++|+|+.+|++ ++++.++    +++++.++++|+++++++++. .+ +.+.+++.
T Consensus       157 ~~-~~~~~g~~vlV~G~-G~vG~~~~~~ak~~G~~~vi~~~~~----~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~  230 (339)
T cd08239         157 RR-VGVSGRDTVLVVGA-GPVGLGALMLARALGAEDVIGVDPS----PERLELAKALGADFVINSGQDDVQEIRELTSGA  230 (339)
T ss_pred             Hh-cCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC----HHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCC
Confidence            65 78999999999987 99999999999999999 7776543    345788899999999986532 33 77777778


Q ss_pred             CCcEEEECCCchhH-HHHHHhcccCCEEEEEeccCCCCcccCc-ccccccCeEEEEEecchhhhhhccHHHHHHHHHHHH
Q psy2960         283 KPKLALNCVGGNSA-TNLLRTLVSKGVMVTYGGMSREPVQIPT-SAFIFKDITLRGHWMTRWQKENKESAERKSMMNELT  360 (405)
Q Consensus       283 g~Dvvld~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~-~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  360 (405)
                      ++|+||||+|+... ..++++++++|+++.+|.....  .++. ..++.+++++.|++..+           .+.+++++
T Consensus       231 ~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~--~~~~~~~~~~~~~~i~g~~~~~-----------~~~~~~~~  297 (339)
T cd08239         231 GADVAIECSGNTAARRLALEAVRPWGRLVLVGEGGEL--TIEVSNDLIRKQRTLIGSWYFS-----------VPDMEECA  297 (339)
T ss_pred             CCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCCCCc--ccCcHHHHHhCCCEEEEEecCC-----------HHHHHHHH
Confidence            99999999998766 5789999999999999964332  2332 34667999999987643           23578889


Q ss_pred             HHHHcCcccC--CcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         361 EMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       361 ~~~~~g~l~~--~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      +++++|.+++  .++++|+++++++||+.+.  +++ .||+||++
T Consensus       298 ~~~~~g~i~~~~~i~~~~~l~~~~~a~~~~~--~~~-~gKvvi~~  339 (339)
T cd08239         298 EFLARHKLEVDRLVTHRFGLDQAPEAYALFA--QGE-SGKVVFVF  339 (339)
T ss_pred             HHHHcCCCChhHeEEEEecHHHHHHHHHHHH--cCC-ceEEEEeC
Confidence            9999999875  4788999999999999988  665 79999975

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN02827 Alcohol dehydrogenase-like

Probab=100.00  E-value=9.6e-47  Score=366.40  Aligned_cols=310  Identities=19%  Similarity=0.273  Sum_probs=260.2

Q ss_pred             cceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCC
Q psy2960          71 YLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVS  150 (405)
Q Consensus        71 ~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~  150 (405)
                      ..||++++.++++.   +++++.|.|+|+++||+|||.++|||++|++.+.|..    .+|.++|||++|+|+++|++|+
T Consensus        11 ~~mka~~~~~~~~~---~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~----~~p~i~GhE~~G~V~~vG~~v~   83 (378)
T PLN02827         11 ITCRAAVAWGAGEA---LVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA----LFPRIFGHEASGIVESIGEGVT   83 (378)
T ss_pred             ceeEEEEEecCCCC---ceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCC----CCCeeecccceEEEEEcCCCCc
Confidence            45999999987654   8889999999999999999999999999999987742    3578999999999999999999


Q ss_pred             CCCCCCEEEecCC-----------------------------------------------CCCcccceEeecccceEEcC
Q psy2960         151 SLAVGDHVIPDTQ-----------------------------------------------HLGTWRNYGKFNHDVLMKVP  183 (405)
Q Consensus       151 ~~~~GdrV~~~~~-----------------------------------------------~~G~~a~~~~v~~~~~~~iP  183 (405)
                      +|++||||++.+.                                               ..|+|+||+.+++..++++|
T Consensus        84 ~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~G~~aeyv~v~~~~~~~iP  163 (378)
T PLN02827         84 EFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYHYCAVSSFSEYTVVHSGCAVKVD  163 (378)
T ss_pred             ccCCCCEEEEecCCCCCCChhhhCcCcccccCccccccccccCCCcccccccCcccccccccccceeeEEechhheEECC
Confidence            9999999997531                                               12799999999999999999


Q ss_pred             CCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC
Q psy2960         184 KDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA  263 (405)
Q Consensus       184 ~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~  263 (405)
                      +++++++++.+++++.|+|+++...+++++|++|||+|+ |++|++++|+|+++|++++++++.   .+++++.++++|+
T Consensus       164 ~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~-G~vG~~~iqlak~~G~~~vi~~~~---~~~~~~~a~~lGa  239 (378)
T PLN02827        164 PLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGL-GTVGLSVAQGAKLRGASQIIGVDI---NPEKAEKAKTFGV  239 (378)
T ss_pred             CCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECC---CHHHHHHHHHcCC
Confidence            999999999999999999998877788999999999987 999999999999999975554432   2446788899999


Q ss_pred             cEEeChh----hHHH-HhhhcCCCCCcEEEECCCch-hHHHHHHhcccC-CEEEEEeccCCCCcccCc-ccccccCeEEE
Q psy2960         264 DYVFTEE----ELRN-ISRDASIPKPKLALNCVGGN-SATNLLRTLVSK-GVMVTYGGMSREPVQIPT-SAFIFKDITLR  335 (405)
Q Consensus       264 ~~v~~~~----d~~~-i~~~t~g~g~Dvvld~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~-~~~~~k~~~~~  335 (405)
                      +++++++    ++.+ +++.+++ ++|+||||+|.. .+..++++++++ |+++.+|..... ..++. ..++.+++++.
T Consensus       240 ~~~i~~~~~~~~~~~~v~~~~~~-g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~~-~~~~~~~~~~~~~~~i~  317 (378)
T PLN02827        240 TDFINPNDLSEPIQQVIKRMTGG-GADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAK-PEVSAHYGLFLSGRTLK  317 (378)
T ss_pred             cEEEcccccchHHHHHHHHHhCC-CCCEEEECCCChHHHHHHHHhhccCCCEEEEECCcCCC-ccccccHHHHhcCceEE
Confidence            9999864    3445 7777765 899999999986 567789999998 999999965332 23332 34667999999


Q ss_pred             EEecchhhhhhccHHHHHHHHHHHHHHHHcCcccC--CcceeeehhhHHHHHHHHhhhcCCCCceEEEEec
Q psy2960         336 GHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       336 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                      |++...+.        ....++++++++++|++++  .++++|+|+++++||+.+.  +++. +|+||+++
T Consensus       318 g~~~~~~~--------~~~~~~~~~~~~~~g~i~~~~~i~~~~~le~~~~A~~~~~--~~~~-~k~vi~~~  377 (378)
T PLN02827        318 GSLFGGWK--------PKSDLPSLVDKYMNKEIMIDEFITHNLSFDEINKAFELMR--EGKC-LRCVIHMP  377 (378)
T ss_pred             eeecCCCc--------hhhhHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHH--CCCc-eEEEEEec
Confidence            98865431        1234778899999999998  6889999999999999998  7765 79999886

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=3.1e-46  Score=361.90  Aligned_cols=308  Identities=19%  Similarity=0.332  Sum_probs=255.1

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      .|+..+...+.+ ..+...+++.|+|+++||+|||.++|||++|++.+.|.++. ..+|.++|||++|+|+++|+++++|
T Consensus         5 ~~a~~~~~~~~~-~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~-~~~p~i~GhE~aG~Vv~vG~~v~~~   82 (375)
T PLN02178          5 NKAFGWAANDES-GVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGF-SRYPIIPGHEIVGIATKVGKNVTKF   82 (375)
T ss_pred             ceeEEEEEccCC-CCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCC-CCCCcccCceeeEEEEEECCCCCcc
Confidence            344444444433 23778889999999999999999999999999999987643 2568999999999999999999999


Q ss_pred             CCCCEEEecC----------------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcH
Q psy2960         153 AVGDHVIPDT----------------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNP  198 (405)
Q Consensus       153 ~~GdrV~~~~----------------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~  198 (405)
                      ++||||+..+                                  ...|+|+||+.++++.++++|+++++++|+++++++
T Consensus        83 ~vGdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~ls~~~aa~l~~~~  162 (375)
T PLN02178         83 KEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVVDHRFVLSIPDGLPSDSGAPLLCAG  162 (375)
T ss_pred             CCCCEEEEcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCCCccccEEEEchHHeEECCCCCCHHHcchhhccc
Confidence            9999997421                                  015899999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcC-CCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhh
Q psy2960         199 CTAYRMLKDYNS-LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISR  277 (405)
Q Consensus       199 ~ta~~al~~~~~-~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~  277 (405)
                      .|+|+++..... .++|++|+|.|+ |++|++++|+|+++|++++++.++.+   ++.+.++++|+++++++++...+.+
T Consensus       163 ~ta~~al~~~~~~~~~g~~VlV~G~-G~vG~~avq~Ak~~Ga~Vi~~~~~~~---~~~~~a~~lGa~~~i~~~~~~~v~~  238 (375)
T PLN02178        163 ITVYSPMKYYGMTKESGKRLGVNGL-GGLGHIAVKIGKAFGLRVTVISRSSE---KEREAIDRLGADSFLVTTDSQKMKE  238 (375)
T ss_pred             hHHHHHHHHhCCCCCCCCEEEEEcc-cHHHHHHHHHHHHcCCeEEEEeCChH---HhHHHHHhCCCcEEEcCcCHHHHHH
Confidence            999999876433 368999999987 99999999999999999888875532   3467788999999998765323655


Q ss_pred             hcCCCCCcEEEECCCch-hHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHH
Q psy2960         278 DASIPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMM  356 (405)
Q Consensus       278 ~t~g~g~Dvvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~  356 (405)
                      .++  ++|+||||+|.. .+..++++++++|+++.+|... .+..++...++.+++++.|++...           .+.+
T Consensus       239 ~~~--~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~~-~~~~~~~~~~~~~~~~i~g~~~~~-----------~~~~  304 (375)
T PLN02178        239 AVG--TMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLPE-KPLDLPIFPLVLGRKMVGGSQIGG-----------MKET  304 (375)
T ss_pred             hhC--CCcEEEECCCcHHHHHHHHHhhcCCCEEEEEccCC-CCCccCHHHHHhCCeEEEEeCccC-----------HHHH
Confidence            553  699999999987 5577899999999999998643 334566667778999999987643           2347


Q ss_pred             HHHHHHHHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         357 NELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       357 ~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      .++++++++|++++.+ ++|||+|+++||+.+.  +++..||+|+++
T Consensus       305 ~~~~~l~~~g~i~~~i-~~~~l~~~~~A~~~~~--~~~~~gkvvi~~  348 (375)
T PLN02178        305 QEMLEFCAKHKIVSDI-ELIKMSDINSAMDRLA--KSDVRYRFVIDV  348 (375)
T ss_pred             HHHHHHHHhCCCcccE-EEEeHHHHHHHHHHHH--cCCCceEEEEEe
Confidence            8889999999999876 6799999999999999  888889999986

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=100.00  E-value=8.9e-46  Score=352.95  Aligned_cols=321  Identities=32%  Similarity=0.487  Sum_probs=274.4

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||++++++++.+.+.+++.+.|.|.+.++||+|||.++++|++|++.+.|.++..+..|.++|||++|+|+++|++++++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~   80 (324)
T cd08292           1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGL   80 (324)
T ss_pred             CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCC
Confidence            78999998876545588999999999999999999999999999999988765434568899999999999999999999


Q ss_pred             CCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHH
Q psy2960         153 AVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQ  232 (405)
Q Consensus       153 ~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiq  232 (405)
                      ++||+|++.. ..|+|++|+.++...++++|++++++++++++++++|||+++.. +++++|++|||+|++|++|++++|
T Consensus        81 ~~Gd~V~~~~-~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~~~~-~~~~~g~~vlI~g~~g~ig~~~~~  158 (324)
T cd08292          81 QVGQRVAVAP-VHGTWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLSALMLLDF-LGVKPGQWLIQNAAGGAVGKLVAM  158 (324)
T ss_pred             CCCCEEEecc-CCCcceeEEEEchHHeEECCCCCCHHHhhhccccHHHHHHHHHh-hCCCCCCEEEEcccccHHHHHHHH
Confidence            9999999883 35999999999999999999999999999999999999999855 899999999999999999999999


Q ss_pred             HHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEE
Q psy2960         233 IARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVM  309 (405)
Q Consensus       233 la~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~  309 (405)
                      +|+++|+++++++++.++    .+.++++|+++++++++  +.. +.+.+.+.++|+||||+|+.....++++++++|++
T Consensus       159 ~a~~~G~~v~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g~~~~~~~~~~l~~~g~~  234 (324)
T cd08292         159 LAAARGINVINLVRRDAG----VAELRALGIGPVVSTEQPGWQDKVREAAGGAPISVALDSVGGKLAGELLSLLGEGGTL  234 (324)
T ss_pred             HHHHCCCeEEEEecCHHH----HHHHHhcCCCEEEcCCCchHHHHHHHHhCCCCCcEEEECCCChhHHHHHHhhcCCcEE
Confidence            999999999999866543    45566789999988753  555 88888889999999999998888889999999999


Q ss_pred             EEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHHh
Q psy2960         310 VTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTM  389 (405)
Q Consensus       310 v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~  389 (405)
                      +.+|........++....+.+++++.++....+..... |....+.++++++++.+|.+++.+.++|+++++.+||+.+.
T Consensus       235 v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~g~i~~~~~~~~~~~~~~~a~~~~~  313 (324)
T cd08292         235 VSFGSMSGEPMQISSGDLIFKQATVRGFWGGRWSQEMS-VEYRKRMIAELLTLALKGQLLLPVEAVFDLGDAAKAAAASM  313 (324)
T ss_pred             EEEecCCCCCCcCCHHHHhhCCCEEEEEEcHHhhhhcC-HHHHHHHHHHHHHHHHCCCccCccccEecHHHHHHHHHHHH
Confidence            99986433333344444567999999998765443221 24456778999999999999976788999999999999998


Q ss_pred             hhcCCCCceEEEE
Q psy2960         390 SIQGKSGVKYYID  402 (405)
Q Consensus       390 ~~~~~~~gKvvl~  402 (405)
                        ++...+|++++
T Consensus       314 --~~~~~~kvvv~  324 (324)
T cd08292         314 --RPGRAGKVLLR  324 (324)
T ss_pred             --cCCCCceEEeC
Confidence              77888999873

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=100.00  E-value=8.1e-46  Score=359.08  Aligned_cols=309  Identities=23%  Similarity=0.305  Sum_probs=254.4

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||++++...+.+   +++++.|.|+|+++||+|||.++|||++|++.+.|.++. ..+|.++|||++|+|+++|++|++|
T Consensus         2 ~~a~~~~~~~~~---l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~-~~~p~i~GhE~~G~V~~vG~~v~~~   77 (368)
T TIGR02818         2 SRAAVAWAAGQP---LKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPE-GVFPVILGHEGAGIVEAVGEGVTSV   77 (368)
T ss_pred             ceEEEEecCCCC---eEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCC-CCCCeeeccccEEEEEEECCCCccC
Confidence            889999888765   889999999999999999999999999999999987654 3578999999999999999999999


Q ss_pred             CCCCEEEecCC-----------------------------------------------CCCcccceEeecccceEEcCCC
Q psy2960         153 AVGDHVIPDTQ-----------------------------------------------HLGTWRNYGKFNHDVLMKVPKD  185 (405)
Q Consensus       153 ~~GdrV~~~~~-----------------------------------------------~~G~~a~~~~v~~~~~~~iP~~  185 (405)
                      ++||||++.+.                                               ..|+|+||+.++...++++|++
T Consensus        78 ~~GdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~  157 (368)
T TIGR02818        78 KVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSKDGQPIYHYMGCSTFSEYTVVPEISLAKINPA  157 (368)
T ss_pred             CCCCEEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCccccccCCCcccccccCccceeeEEechhheEECCCC
Confidence            99999987521                                               1269999999999999999999


Q ss_pred             CChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHcCCc
Q psy2960         186 IALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGAD  264 (405)
Q Consensus       186 ~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~lg~~  264 (405)
                      +++++|+++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+++|+ +|+++.++    +++++.++++|++
T Consensus       158 l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~-G~iG~~a~q~Ak~~G~~~Vi~~~~~----~~~~~~a~~~Ga~  232 (368)
T TIGR02818       158 APLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGL-GGIGLSVIQGARMAKASRIIAIDIN----PAKFELAKKLGAT  232 (368)
T ss_pred             CCHHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC----HHHHHHHHHhCCC
Confidence            9999999999999999999987789999999999986 9999999999999999 57766543    4568888999999


Q ss_pred             EEeChhh----HHH-HhhhcCCCCCcEEEECCCch-hHHHHHHhcccC-CEEEEEeccCC-CCcccCcccccccCeEEEE
Q psy2960         265 YVFTEEE----LRN-ISRDASIPKPKLALNCVGGN-SATNLLRTLVSK-GVMVTYGGMSR-EPVQIPTSAFIFKDITLRG  336 (405)
Q Consensus       265 ~v~~~~d----~~~-i~~~t~g~g~Dvvld~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~k~~~~~g  336 (405)
                      +++++++    +.+ +++.+++ ++|++|||+|+. ....++++++++ |+++.+|.... ....+....++ ++..+.+
T Consensus       233 ~~i~~~~~~~~~~~~v~~~~~~-g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g  310 (368)
T TIGR02818       233 DCVNPNDYDKPIQEVIVEITDG-GVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQEISTRPFQLV-TGRVWRG  310 (368)
T ss_pred             eEEcccccchhHHHHHHHHhCC-CCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEeccCCCCcccccHHHHh-ccceEEE
Confidence            9998652    445 7777775 899999999975 456789999886 99999996432 22233333333 3445677


Q ss_pred             EecchhhhhhccHHHHHHHHHHHHHHHHcCcccC--CcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         337 HWMTRWQKENKESAERKSMMNELTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      +......        ....+.++++++++|++++  .++++|+|+|+++||+.+.  +++ ..|++|++
T Consensus       311 ~~~~~~~--------~~~~~~~~~~~~~~g~i~~~~~it~~~~l~~~~~A~~~~~--~~~-~~k~~v~~  368 (368)
T TIGR02818       311 SAFGGVK--------GRTELPGIVEQYMKGEIALDDFVTHTMPLEDINEAFDLMH--EGK-SIRTVIHY  368 (368)
T ss_pred             eeccCCC--------cHHHHHHHHHHHHCCCCCchhheeEEecHHHHHHHHHHHh--CCC-ceeEEeeC
Confidence            6543211        1235788999999999864  4789999999999999998  665 47999874

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=100.00  E-value=8.9e-46  Score=359.34  Aligned_cols=309  Identities=19%  Similarity=0.272  Sum_probs=258.9

Q ss_pred             cceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCC
Q psy2960          71 YLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVS  150 (405)
Q Consensus        71 ~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~  150 (405)
                      ++||++++.+++++   +++++.|.|+|+++||+|||.++|||++|++.+.|..+. ..+|.++|||++|+|+++|++|+
T Consensus         1 ~~~ka~~~~~~~~~---~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~   76 (369)
T cd08301           1 ITCKAAVAWEAGKP---LVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQT-PLFPRILGHEAAGIVESVGEGVT   76 (369)
T ss_pred             CccEEEEEecCCCC---cEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCC-CCCCcccccccceEEEEeCCCCC
Confidence            37999999988765   889999999999999999999999999999999987653 36789999999999999999999


Q ss_pred             CCCCCCEEEecCC------------------------------------------------CCCcccceEeecccceEEc
Q psy2960         151 SLAVGDHVIPDTQ------------------------------------------------HLGTWRNYGKFNHDVLMKV  182 (405)
Q Consensus       151 ~~~~GdrV~~~~~------------------------------------------------~~G~~a~~~~v~~~~~~~i  182 (405)
                      +|++||||++.+.                                                ..|+|+||+.++...++++
T Consensus        77 ~~~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~i  156 (369)
T cd08301          77 DLKPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIYHFVGTSTFSEYTVVHVGCVAKI  156 (369)
T ss_pred             ccccCCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccccCCcceeeeeccccceeEEEEecccEEEC
Confidence            9999999987521                                                1378999999999999999


Q ss_pred             CCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHc
Q psy2960         183 PKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSL  261 (405)
Q Consensus       183 P~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~l  261 (405)
                      |+++++++|+++++++.|||+++...+++++|++|||+|+ |++|++++|+|+.+|+ +++++.++    +++++.++++
T Consensus       157 P~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~-g~vG~~a~q~ak~~G~~~vi~~~~~----~~~~~~~~~~  231 (369)
T cd08301         157 NPEAPLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGL-GAVGLAVAEGARIRGASRIIGVDLN----PSKFEQAKKF  231 (369)
T ss_pred             CCCCCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC----HHHHHHHHHc
Confidence            9999999999999999999999888789999999999986 9999999999999999 67777644    3457888999


Q ss_pred             CCcEEeChhh----HHH-HhhhcCCCCCcEEEECCCch-hHHHHHHhcccC-CEEEEEeccCC-CCcccCcccccccCeE
Q psy2960         262 GADYVFTEEE----LRN-ISRDASIPKPKLALNCVGGN-SATNLLRTLVSK-GVMVTYGGMSR-EPVQIPTSAFIFKDIT  333 (405)
Q Consensus       262 g~~~v~~~~d----~~~-i~~~t~g~g~Dvvld~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~k~~~  333 (405)
                      |++.++++.+    +.+ +++.+++ ++|++|||+|+. ....++++++++ |+++.+|.... ...+++...+ .++++
T Consensus       232 Ga~~~i~~~~~~~~~~~~v~~~~~~-~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~-~~~~~  309 (369)
T cd08301         232 GVTEFVNPKDHDKPVQEVIAEMTGG-GVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVFSTHPMNL-LNGRT  309 (369)
T ss_pred             CCceEEcccccchhHHHHHHHHhCC-CCCEEEECCCChHHHHHHHHHhhcCCCEEEEECcCCCCcccccCHHHH-hcCCe
Confidence            9999988643    444 7777765 899999999975 456789999996 99999996543 2233433333 37899


Q ss_pred             EEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccC--CcceeeehhhHHHHHHHHhhhcCCCCceEEE
Q psy2960         334 LRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYI  401 (405)
Q Consensus       334 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl  401 (405)
                      +.|++...+.        ....++++++++.+|.+++  .++++|+++|+++||+.+.  +++. .|++|
T Consensus       310 i~g~~~~~~~--------~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~A~~~~~--~~~~-~k~~~  368 (369)
T cd08301         310 LKGTLFGGYK--------PKTDLPNLVEKYMKKELELEKFITHELPFSEINKAFDLLL--KGEC-LRCIL  368 (369)
T ss_pred             EEEEecCCCC--------hHHHHHHHHHHHHcCCCCcHHheeeeecHHHHHHHHHHHH--CCCc-eeEEe
Confidence            9998765432        1345788899999998765  4789999999999999999  7775 48887

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=7.4e-46  Score=353.87  Aligned_cols=298  Identities=18%  Similarity=0.197  Sum_probs=250.1

Q ss_pred             EEEccCCCCc-cceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCCCC
Q psy2960          76 LVYNQHGTPL-RVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAV  154 (405)
Q Consensus        76 ~~~~~~g~~~-~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~~  154 (405)
                      +.+.++|.+. ..+++++.|.|+|+++||+|||.++|||++|++.+.|.++.. .+|.++|||++|+|+++|+++++|++
T Consensus         2 ~~~~~~g~~~~~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~~-~~p~i~G~e~~G~V~~vG~~v~~~~~   80 (329)
T TIGR02822         2 WEVERPGPIEDGPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVH-RPRVTPGHEVVGEVAGRGADAGGFAV   80 (329)
T ss_pred             eeeecCCcCCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCCC-CCCccCCcceEEEEEEECCCCcccCC
Confidence            5666676553 458999999999999999999999999999999999976542 35789999999999999999999999


Q ss_pred             CCEEEecC---------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHh
Q psy2960         155 GDHVIPDT---------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKD  207 (405)
Q Consensus       155 GdrV~~~~---------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~  207 (405)
                      ||||+..+                           ..+|+|+||+.++...++++|+++++++++.+++++.|||+++..
T Consensus        81 Gd~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~~~~~aa~l~~~~~ta~~~~~~  160 (329)
T TIGR02822        81 GDRVGIAWLRRTCGVCRYCRRGAENLCPASRYTGWDTDGGYAEYTTVPAAFAYRLPTGYDDVELAPLLCAGIIGYRALLR  160 (329)
T ss_pred             CCEEEEcCccCcCCCChHHhCcCcccCCCcccCCcccCCcceeEEEeccccEEECCCCCCHHHhHHHhccchHHHHHHHh
Confidence            99997421                           124899999999999999999999999999999999999999965


Q ss_pred             hcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEE
Q psy2960         208 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLA  287 (405)
Q Consensus       208 ~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvv  287 (405)
                       +++++|++|||+|+ |++|++++|+|+.+|++++++++++    ++++.++++|+++++++.+..       ..++|++
T Consensus       161 -~~~~~g~~VlV~G~-g~iG~~a~~~a~~~G~~vi~~~~~~----~~~~~a~~~Ga~~vi~~~~~~-------~~~~d~~  227 (329)
T TIGR02822       161 -ASLPPGGRLGLYGF-GGSAHLTAQVALAQGATVHVMTRGA----AARRLALALGAASAGGAYDTP-------PEPLDAA  227 (329)
T ss_pred             -cCCCCCCEEEEEcC-CHHHHHHHHHHHHCCCeEEEEeCCh----HHHHHHHHhCCceeccccccC-------cccceEE
Confidence             89999999999998 9999999999999999988887553    357899999999998754311       2468999


Q ss_pred             EECCCc-hhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcC
Q psy2960         288 LNCVGG-NSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTG  366 (405)
Q Consensus       288 ld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  366 (405)
                      +++.+. ..+..++++++++|+++.+|........++...++.+++++.+++...           ...+.++++++++|
T Consensus       228 i~~~~~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~-----------~~~~~~~~~l~~~g  296 (329)
T TIGR02822       228 ILFAPAGGLVPPALEALDRGGVLAVAGIHLTDTPPLNYQRHLFYERQIRSVTSNT-----------RADAREFLELAAQH  296 (329)
T ss_pred             EECCCcHHHHHHHHHhhCCCcEEEEEeccCccCCCCCHHHHhhCCcEEEEeecCC-----------HHHHHHHHHHHHhC
Confidence            988875 444678999999999999996433223455556677899999886432           23467788999999


Q ss_pred             cccCCcceeeehhhHHHHHHHHhhhcCCCCceEEE
Q psy2960         367 KLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYI  401 (405)
Q Consensus       367 ~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl  401 (405)
                      ++++ ++++|+|+|+++||+.+.  +++..||+||
T Consensus       297 ~i~~-i~~~~~l~~~~~A~~~~~--~~~~~Gkvvl  328 (329)
T TIGR02822       297 GVRV-TTHTYPLSEADRALRDLK--AGRFDGAAVL  328 (329)
T ss_pred             CCee-EEEEEeHHHHHHHHHHHH--cCCCceEEEe
Confidence            9985 578999999999999999  8999999987

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=100.00  E-value=1.1e-45  Score=358.44  Aligned_cols=309  Identities=23%  Similarity=0.329  Sum_probs=255.0

Q ss_pred             ceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCC
Q psy2960          72 LANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSS  151 (405)
Q Consensus        72 ~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~  151 (405)
                      +||++++..++++   +++++.|.|+|+++||+|||.++|||++|++.+.|.++. ..+|.++|||++|+|+++|+++++
T Consensus         2 ~~~a~~~~~~~~~---~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~-~~~p~v~G~E~~G~V~~vG~~v~~   77 (368)
T cd08300           2 TCKAAVAWEAGKP---LSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPE-GLFPVILGHEGAGIVESVGEGVTS   77 (368)
T ss_pred             cceEEEEecCCCC---cEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCcc-CCCCceeccceeEEEEEeCCCCcc
Confidence            6899998887765   889999999999999999999999999999999987654 367999999999999999999999


Q ss_pred             CCCCCEEEecCC-----------------------------------------------CCCcccceEeecccceEEcCC
Q psy2960         152 LAVGDHVIPDTQ-----------------------------------------------HLGTWRNYGKFNHDVLMKVPK  184 (405)
Q Consensus       152 ~~~GdrV~~~~~-----------------------------------------------~~G~~a~~~~v~~~~~~~iP~  184 (405)
                      |++||||++.+.                                               ..|+|+||+.+++..++++|+
T Consensus        78 ~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~  157 (368)
T cd08300          78 VKPGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGKPIYHFMGTSTFSEYTVVAEISVAKINP  157 (368)
T ss_pred             CCCCCEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCccccccCCcccccccccccceeEEEEchhceEeCCC
Confidence            999999986521                                               136899999999999999999


Q ss_pred             CCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHcCC
Q psy2960         185 DIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGA  263 (405)
Q Consensus       185 ~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~lg~  263 (405)
                      ++++++|+++++++.|||+++...+++++|++|||+|+ |++|++++|+|+.+|+ +++++.++    +++++.++++|+
T Consensus       158 ~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~-G~vG~~a~~~ak~~G~~~vi~~~~~----~~~~~~~~~lGa  232 (368)
T cd08300         158 EAPLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGL-GAVGLAVIQGAKAAGASRIIGIDIN----PDKFELAKKFGA  232 (368)
T ss_pred             CCChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCC----HHHHHHHHHcCC
Confidence            99999999999999999999877789999999999986 9999999999999999 47766544    345788899999


Q ss_pred             cEEeChhh----HHH-HhhhcCCCCCcEEEECCCch-hHHHHHHhcccC-CEEEEEeccCC-CCcccCcccccccCeEEE
Q psy2960         264 DYVFTEEE----LRN-ISRDASIPKPKLALNCVGGN-SATNLLRTLVSK-GVMVTYGGMSR-EPVQIPTSAFIFKDITLR  335 (405)
Q Consensus       264 ~~v~~~~d----~~~-i~~~t~g~g~Dvvld~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~k~~~~~  335 (405)
                      ++++++++    +.+ +.+.+++ ++|+||||+|+. ....++++++++ |+++.+|.... .....+...+. ++.++.
T Consensus       233 ~~~i~~~~~~~~~~~~v~~~~~~-g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~  310 (368)
T cd08300         233 TDCVNPKDHDKPIQQVLVEMTDG-GVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQEISTRPFQLV-TGRVWK  310 (368)
T ss_pred             CEEEcccccchHHHHHHHHHhCC-CCcEEEECCCChHHHHHHHHhhccCCCeEEEEccCCCCCccccCHHHHh-hcCeEE
Confidence            99998643    555 7777776 899999999974 567789999886 99999996532 22222222232 345666


Q ss_pred             EEecchhhhhhccHHHHHHHHHHHHHHHHcCcccC--CcceeeehhhHHHHHHHHhhhcCCCCceEEEE
Q psy2960         336 GHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYID  402 (405)
Q Consensus       336 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~  402 (405)
                      ++....+.        ..+.+.++++++++|++++  .++++|+|+|+++||+.+.  +++. .|++|+
T Consensus       311 g~~~~~~~--------~~~~~~~~~~~~~~g~l~~~~~i~~~~~le~~~~A~~~~~--~~~~-~k~~~~  368 (368)
T cd08300         311 GTAFGGWK--------SRSQVPKLVEDYMKGKIKVDEFITHTMPLDEINEAFDLMH--AGKS-IRTVVK  368 (368)
T ss_pred             EEEecccC--------cHHHHHHHHHHHHcCCCChhhceeeeEcHHHHHHHHHHHh--CCCC-ceeeeC
Confidence            66554321        1345778899999999986  3789999999999999998  6664 699875

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=100.00  E-value=1.5e-45  Score=354.23  Aligned_cols=302  Identities=18%  Similarity=0.241  Sum_probs=247.1

Q ss_pred             cceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhc-ccCCC-CCCCCCCCccceEEEEEEEcCC
Q psy2960          71 YLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQ-GVYPI-KPTLPAVPGFEGVGEVVEVGSD  148 (405)
Q Consensus        71 ~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~-g~~~~-~~~~p~~lG~E~~G~V~~vG~~  148 (405)
                      -.+++++++++++    +++++.|.| ++++||||||.++|||++|++.+. |..+. ...+|.++|||++|+|+++  +
T Consensus         3 ~~~~~~~~~~~~~----~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~   75 (343)
T PRK09880          3 VKTQSCVVAGKKD----VAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--D   75 (343)
T ss_pred             ccceEEEEecCCc----eEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--c
Confidence            3578999998877    889999997 689999999999999999999875 44322 2357999999999999999  7


Q ss_pred             CCCCCCCCEEEecC-------------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCc
Q psy2960         149 VSSLAVGDHVIPDT-------------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSN  197 (405)
Q Consensus       149 v~~~~~GdrV~~~~-------------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~  197 (405)
                      +++|++||||+..+                               ..+|+|+||++++++.++++|+++++++++. ..+
T Consensus        76 v~~~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~-~~~  154 (343)
T PRK09880         76 SSGLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRFFGSAMYFPHVDGGFTRYKVVDTAQCIPYPEKADEKVMAF-AEP  154 (343)
T ss_pred             CccCCCCCEEEECCCCCCcCChhhcCCChhhCCCcceeecccccCCCCCceeeeEEechHHeEECCCCCCHHHHHh-hcH
Confidence            89999999998531                               1259999999999999999999999987664 457


Q ss_pred             HHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH
Q psy2960         198 PCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN  274 (405)
Q Consensus       198 ~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~  274 (405)
                      +.+||+++.. ....+|++|||+|+ |++|++++|+|+++|++ ++++.++    +++++.++++|+++++|+++  +.+
T Consensus       155 ~~~a~~al~~-~~~~~g~~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~----~~~~~~a~~lGa~~vi~~~~~~~~~  228 (343)
T PRK09880        155 LAVAIHAAHQ-AGDLQGKRVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVS----PRSLSLAREMGADKLVNPQNDDLDH  228 (343)
T ss_pred             HHHHHHHHHh-cCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCC----HHHHHHHHHcCCcEEecCCcccHHH
Confidence            7899999976 56678999999997 99999999999999995 5555533    45688999999999998754  333


Q ss_pred             HhhhcCCCCCcEEEECCCch-hHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHH
Q psy2960         275 ISRDASIPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERK  353 (405)
Q Consensus       275 i~~~t~g~g~Dvvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~  353 (405)
                      +.+.  ..++|+||||+|++ ....++++++++|+++.+|... ....++...++.|++++.+++..            .
T Consensus       229 ~~~~--~g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~-~~~~~~~~~~~~k~~~i~g~~~~------------~  293 (343)
T PRK09880        229 YKAE--KGYFDVSFEVSGHPSSINTCLEVTRAKGVMVQVGMGG-APPEFPMMTLIVKEISLKGSFRF------------T  293 (343)
T ss_pred             Hhcc--CCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCC-CCCccCHHHHHhCCcEEEEEeec------------c
Confidence            2222  23699999999985 4567899999999999999532 23456666777899999998642            2


Q ss_pred             HHHHHHHHHHHcCcccC--CcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         354 SMMNELTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       354 ~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      +.++++++++++|++++  .++++|+++|+++||+.+.  +++..||++|.+
T Consensus       294 ~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~--~~~~~gKvvl~~  343 (343)
T PRK09880        294 EEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALIFAG--DKTQAAKVQLVF  343 (343)
T ss_pred             ccHHHHHHHHHcCCCCchhheEEEEEHHHHHHHHHHHh--cCCCceEEEEeC
Confidence            34788999999999986  4779999999999999998  777889999874

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=3.4e-45  Score=353.33  Aligned_cols=309  Identities=21%  Similarity=0.288  Sum_probs=260.6

Q ss_pred             cceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCC
Q psy2960          71 YLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVS  150 (405)
Q Consensus        71 ~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~  150 (405)
                      +.++++++++++++   ++++++|.|+|+++||+|||.++|||++|++.+.|.++. ..+|.++|||++|+|+++|++++
T Consensus         8 ~~~~~~~~~~~~~~---~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~E~~G~Vv~vG~~v~   83 (357)
T PLN02514          8 KKTTGWAARDPSGH---LSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGM-SNYPMVPGHEVVGEVVEVGSDVS   83 (357)
T ss_pred             ceEEEEEEecCCCC---ceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCc-CCCCccCCceeeEEEEEECCCcc
Confidence            34899999999876   889999999999999999999999999999999887643 25689999999999999999999


Q ss_pred             CCCCCCEEEecC----------------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCC
Q psy2960         151 SLAVGDHVIPDT----------------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITS  196 (405)
Q Consensus       151 ~~~~GdrV~~~~----------------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~  196 (405)
                      +|++||+|+..+                                  ...|+|+||+.++...++++|+++++++|+++++
T Consensus        84 ~~~~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~  163 (357)
T PLN02514         84 KFTVGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQGGFASAMVVDQKFVVKIPEGMAPEQAAPLLC  163 (357)
T ss_pred             cccCCCEEEEcCccccCCCChhHhCCCcccCCCccccccccccCCccCCCccccEEEEchHHeEECCCCCCHHHhhhhhh
Confidence            999999997421                                  0248999999999999999999999999999999


Q ss_pred             cHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHh
Q psy2960         197 NPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNIS  276 (405)
Q Consensus       197 ~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~  276 (405)
                      ++.|||+++......++|++|+|+|+ |++|++++|+|+++|+++++++++++   ++...++++|+++++++.+...+.
T Consensus       164 ~~~ta~~al~~~~~~~~g~~vlV~G~-G~vG~~av~~Ak~~G~~vi~~~~~~~---~~~~~~~~~Ga~~~i~~~~~~~~~  239 (357)
T PLN02514        164 AGVTVYSPLSHFGLKQSGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSDK---KREEALEHLGADDYLVSSDAAEMQ  239 (357)
T ss_pred             hHHHHHHHHHHcccCCCCCeEEEEcc-cHHHHHHHHHHHHCCCeEEEEeCCHH---HHHHHHHhcCCcEEecCCChHHHH
Confidence            99999999987666789999999976 99999999999999999888875543   233455679999888765433355


Q ss_pred             hhcCCCCCcEEEECCCch-hHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHH
Q psy2960         277 RDASIPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSM  355 (405)
Q Consensus       277 ~~t~g~g~Dvvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~  355 (405)
                      +.+  .++|++|||+|.. ....++++++++|+++.+|.... ...++...++.+++++.|++...           ...
T Consensus       240 ~~~--~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~-~~~~~~~~~~~~~~~i~g~~~~~-----------~~~  305 (357)
T PLN02514        240 EAA--DSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINT-PLQFVTPMLMLGRKVITGSFIGS-----------MKE  305 (357)
T ss_pred             Hhc--CCCcEEEECCCchHHHHHHHHHhccCCEEEEECCCCC-CCcccHHHHhhCCcEEEEEecCC-----------HHH
Confidence            554  3699999999964 55678999999999999996532 34555666778999999987654           234


Q ss_pred             HHHHHHHHHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEec
Q psy2960         356 MNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       356 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                      ++++++++++|.+++.+ ++|+++|+.+||+.+.  +++..||+||+++
T Consensus       306 ~~~~~~~~~~g~l~~~i-~~~~l~~~~~A~~~~~--~~~~~gk~v~~~~  351 (357)
T PLN02514        306 TEEMLEFCKEKGLTSMI-EVVKMDYVNTAFERLE--KNDVRYRFVVDVA  351 (357)
T ss_pred             HHHHHHHHHhCCCcCcE-EEEcHHHHHHHHHHHH--cCCCceeEEEEcc
Confidence            78889999999998765 6899999999999999  8888899999875

>KOG0022|consensus

Probab=100.00  E-value=7.2e-46  Score=329.20  Aligned_cols=313  Identities=21%  Similarity=0.257  Sum_probs=272.0

Q ss_pred             ccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCC
Q psy2960          70 SYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDV  149 (405)
Q Consensus        70 ~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v  149 (405)
                      +.++||++..++++|   |.++++..++|+.+||+||+.++++|++|.+.+.|..+. ..+|+++|||++|+|+.+|.+|
T Consensus         5 vI~CKAAV~w~a~~P---L~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~~-~~fP~IlGHEaaGIVESvGegV   80 (375)
T KOG0022|consen    5 VITCKAAVAWEAGKP---LVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDPE-GLFPVILGHEAAGIVESVGEGV   80 (375)
T ss_pred             ceEEeEeeeccCCCC---eeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCCcc-ccCceEecccceeEEEEecCCc
Confidence            568999999999999   999999999999999999999999999999999998654 4789999999999999999999


Q ss_pred             CCCCCCCEEEecC------------------------------------------------CCCCcccceEeecccceEE
Q psy2960         150 SSLAVGDHVIPDT------------------------------------------------QHLGTWRNYGKFNHDVLMK  181 (405)
Q Consensus       150 ~~~~~GdrV~~~~------------------------------------------------~~~G~~a~~~~v~~~~~~~  181 (405)
                      +++++||+|+...                                                ....+|+||.+++...+.+
T Consensus        81 ~~vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~k  160 (375)
T KOG0022|consen   81 TTVKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVAK  160 (375)
T ss_pred             cccCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEeecceeEe
Confidence            9999999999763                                                0124899999999999999


Q ss_pred             cCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc
Q psy2960         182 VPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL  261 (405)
Q Consensus       182 iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l  261 (405)
                      |++...++.++.+.|...|+|.|..+.++++||++|.|.|. |+||+++++-||+.||..|+.+   +-.+.+.+.++++
T Consensus       161 Id~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGL-G~VGLav~~Gaka~GAsrIIgv---DiN~~Kf~~ak~f  236 (375)
T KOG0022|consen  161 IDPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGL-GGVGLAVAMGAKAAGASRIIGV---DINPDKFEKAKEF  236 (375)
T ss_pred             cCCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEec-chHHHHHHHhHHhcCcccEEEE---ecCHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999 9999999999999999777777   4445678999999


Q ss_pred             CCcEEeChhh----HHH-HhhhcCCCCCcEEEECCCchhH-HHHHHhcccC-CEEEEEeccC-CCCcccCcccccccCeE
Q psy2960         262 GADYVFTEEE----LRN-ISRDASIPKPKLALNCVGGNSA-TNLLRTLVSK-GVMVTYGGMS-REPVQIPTSAFIFKDIT  333 (405)
Q Consensus       262 g~~~v~~~~d----~~~-i~~~t~g~g~Dvvld~~g~~~~-~~~~~~l~~~-G~~v~~g~~~-~~~~~~~~~~~~~k~~~  333 (405)
                      |+.+.+|+.|    ..+ +.++|+ .|+|+-+||+|+..+ .+++.+..++ |.-+.+|-.. +...++.++.++ .+.+
T Consensus       237 GaTe~iNp~d~~~~i~evi~EmTd-gGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l~-~GR~  314 (375)
T KOG0022|consen  237 GATEFINPKDLKKPIQEVIIEMTD-GGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQLV-TGRT  314 (375)
T ss_pred             CcceecChhhccccHHHHHHHHhc-CCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcccccchhhhc-cccE
Confidence            9999999876    345 888886 799999999999766 4678888888 9999999643 444566666666 5888


Q ss_pred             EEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccC--CcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         334 LRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       334 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      +.|+.++.|..        +..+..+++...+++++.  .+++.+||+++++||+.|.  +|+.. +.||.+
T Consensus       315 ~~Gs~FGG~K~--------~~~iP~lV~~y~~~~l~ld~~ITh~l~f~~In~AF~ll~--~Gksi-R~vl~~  375 (375)
T KOG0022|consen  315 WKGSAFGGFKS--------KSDIPKLVKDYMKKKLNLDEFITHELPFEEINKAFDLLH--EGKSI-RCVLWM  375 (375)
T ss_pred             EEEEecccccc--------hhhhhHHHHHHHhCccchhhhhhcccCHHHHHHHHHHHh--CCceE-EEEEeC
Confidence            89888877532        555778888888888764  4999999999999999999  88876 777653

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=100.00  E-value=4.1e-45  Score=351.30  Aligned_cols=317  Identities=22%  Similarity=0.265  Sum_probs=257.3

Q ss_pred             ccceeEEEEccC--CCCc-cceEeeee---cCC-CCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCcc--ceEE
Q psy2960          70 SYLANKLVYNQH--GTPL-RVVTVENE---TLN-SVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGF--EGVG  140 (405)
Q Consensus        70 ~~~~~a~~~~~~--g~~~-~~l~~~~~---~~p-~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~--E~~G  140 (405)
                      +.++|.|++.+.  |.|. +.+++++.   +.| ++++|||||||.|+++|+.|.....+..+ ....|+++|+  |++|
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~-~~~~p~~~G~~~~~~G   84 (348)
T PLN03154          6 VVENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHD-SYLPPFVPGQRIEGFG   84 (348)
T ss_pred             cccceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCC-CCCCCcCCCCeeEeeE
Confidence            455788888543  2222 45777774   666 35899999999999999999865443222 1235889998  8899


Q ss_pred             EEEEEcCCCCCCCCCCEEEecCCCCCcccceEeecccc--eEE--cCCCCChh-hhccCCCcHHHHHHHHHhhcCCCCCC
Q psy2960         141 EVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDV--LMK--VPKDIALT-EISGITSNPCTAYRMLKDYNSLSPGD  215 (405)
Q Consensus       141 ~V~~vG~~v~~~~~GdrV~~~~~~~G~~a~~~~v~~~~--~~~--iP~~~s~~-~Aa~~~~~~~ta~~al~~~~~~~~g~  215 (405)
                      +|..+|+++++|++||||+++    |+|+||+.++...  +++  +|++++++ +||+++++++|||+++...+++++|+
T Consensus        85 ~v~~vg~~v~~~~~Gd~V~~~----~~~aey~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~  160 (348)
T PLN03154         85 VSKVVDSDDPNFKPGDLISGI----TGWEEYSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGD  160 (348)
T ss_pred             EEEEEecCCCCCCCCCEEEec----CCcEEEEEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCC
Confidence            999999999999999999876    7899999998853  544  59999997 78899999999999998888999999


Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHH-HcCCcEEeChh---hHHH-HhhhcCCCCCcEEEEC
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGADYVFTEE---ELRN-ISRDASIPKPKLALNC  290 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~-~lg~~~v~~~~---d~~~-i~~~t~g~g~Dvvld~  290 (405)
                      +|||+|++|++|++++|+|+++|++++++++++    ++++.++ ++|++++++++   ++.+ +++.++ .++|++|||
T Consensus       161 ~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~----~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~-~gvD~v~d~  235 (348)
T PLN03154        161 SVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSS----QKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFP-EGIDIYFDN  235 (348)
T ss_pred             EEEEecCccHHHHHHHHHHHHcCCEEEEEcCCH----HHHHHHHHhcCCCEEEECCCcccHHHHHHHHCC-CCcEEEEEC
Confidence            999999999999999999999999998887554    3467776 79999999864   4555 777764 589999999


Q ss_pred             CCchhHHHHHHhcccCCEEEEEeccCCCCcc-----cCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHc
Q psy2960         291 VGGNSATNLLRTLVSKGVMVTYGGMSREPVQ-----IPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRT  365 (405)
Q Consensus       291 ~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~-----~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (405)
                      +|+.....++++++++|+++.+|........     .+...++.+++++.|++...+.      ....+.++++++++++
T Consensus       236 vG~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~------~~~~~~~~~~~~l~~~  309 (348)
T PLN03154        236 VGGDMLDAALLNMKIHGRIAVCGMVSLNSLSASQGIHNLYNLISKRIRMQGFLQSDYL------HLFPQFLENVSRYYKQ  309 (348)
T ss_pred             CCHHHHHHHHHHhccCCEEEEECccccCCCCCCCCcccHHHHhhccceEEEEEHHHHH------HHHHHHHHHHHHHHHC
Confidence            9998888899999999999999965432211     2344567799999998865432      1234568889999999


Q ss_pred             CcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEec
Q psy2960         366 GKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       366 g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                      |++++.+..+|+|+++++||+.++  +++..||+||++.
T Consensus       310 G~l~~~~~~~~~L~~~~~A~~~l~--~g~~~GKvVl~~~  346 (348)
T PLN03154        310 GKIVYIEDMSEGLESAPAALVGLF--SGKNVGKQVIRVA  346 (348)
T ss_pred             CCccCceecccCHHHHHHHHHHHH--cCCCCceEEEEec
Confidence            999988778999999999999999  8999999999875

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=100.00  E-value=7.6e-45  Score=349.14  Aligned_cols=326  Identities=55%  Similarity=0.878  Sum_probs=278.6

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCC-CeEEEEEEEeecChhhhhhhcccCCCCCC----CCCCCccceEEEEEEEcC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQK-HEVVVKMLVAPVNPADINTIQGVYPIKPT----LPAVPGFEGVGEVVEVGS  147 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~-~eVlVkv~a~gi~~~D~~~~~g~~~~~~~----~p~~lG~E~~G~V~~vG~  147 (405)
                      ||+|.+.+++.+.+.+.+++.|.|+|.+ +||+||+.++|+|++|++.+.|..+....    +|.++|||++|+|+++|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~   80 (341)
T cd08290           1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGS   80 (341)
T ss_pred             CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCC
Confidence            8999999998765568999999999888 99999999999999999999887653323    678999999999999999


Q ss_pred             CCCCCCCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHH
Q psy2960         148 DVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACG  227 (405)
Q Consensus       148 ~v~~~~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG  227 (405)
                      +++.|++||+|++.....|+|++|+.++.+.++++|+++++++++++++.++|||+++...+.+++|++|||+|++|++|
T Consensus        81 ~v~~~~~Gd~V~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg  160 (341)
T cd08290          81 GVKSLKPGDWVIPLRPGLGTWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVG  160 (341)
T ss_pred             CCCCCCCCCEEEecCCCCccchheEeccHHHeEeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHH
Confidence            99999999999988544699999999999999999999999999999999999999998878899999999999999999


Q ss_pred             HHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChh-----hHHH-HhhhcCCCCCcEEEECCCchhHHHHHH
Q psy2960         228 QNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE-----ELRN-ISRDASIPKPKLALNCVGGNSATNLLR  301 (405)
Q Consensus       228 ~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~-----d~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~  301 (405)
                      ++++|+|+++|+++++++++.++.+++.+.++++|++++++++     ++.. +...+.+ ++|++|||+|+......++
T Consensus       161 ~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~-~~d~vld~~g~~~~~~~~~  239 (341)
T cd08290         161 QAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVLTEEELRSLLATELLKSAPGG-RPKLALNCVGGKSATELAR  239 (341)
T ss_pred             HHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccccccHHHHHHHHcCC-CceEEEECcCcHhHHHHHH
Confidence            9999999999999999997764334567788899999998765     3444 6666666 8999999999988888899


Q ss_pred             hcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhh-hhccHHHHHHHHHHHHHHHHcCcccCCcceee---e
Q psy2960         302 TLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQK-ENKESAERKSMMNELTEMMRTGKLAAPAHKFV---T  377 (405)
Q Consensus       302 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~---~  377 (405)
                      +++++|+++.+|........++...++.+++++.++....+.. ..  |....+.+..+++++.+|.+.+.+..++   +
T Consensus       240 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  317 (341)
T cd08290         240 LLSPGGTMVTYGGMSGQPVTVPTSLLIFKDITLRGFWLTRWLKRAN--PEEKEDMLEELAELIREGKLKAPPVEKVTDDP  317 (341)
T ss_pred             HhCCCCEEEEEeccCCCCcccCHHHHhhCCceEEEEecHHHHhhcC--HHHHHHHHHHHHHHHHcCCccCCcccccccCC
Confidence            9999999999985443333444445577999999998765432 22  2455667889999999999998776777   9


Q ss_pred             hhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         378 LKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       378 ~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      ++++++||+.+.  +++..||+|+++
T Consensus       318 ~~~~~~a~~~~~--~~~~~~k~v~~~  341 (341)
T cd08290         318 LEEFKDALANAL--KGGGGGKQVLVM  341 (341)
T ss_pred             HHHHHHHHHHHh--hcCCCCeEEEeC
Confidence            999999999998  888999999874

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=100.00  E-value=1.2e-44  Score=350.82  Aligned_cols=309  Identities=21%  Similarity=0.299  Sum_probs=257.3

Q ss_pred             cceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCC
Q psy2960          71 YLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVS  150 (405)
Q Consensus        71 ~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~  150 (405)
                      +.||++++.+.+++   +++++.|.|.++++||+|||.++|+|++|++.+.|.++  ..+|.++|||++|+|+++|++++
T Consensus         1 ~~~ka~~~~~~~~~---~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~--~~~p~i~G~e~~G~V~~vG~~v~   75 (365)
T cd08277           1 IKCKAAVAWEAGKP---LVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA--TLFPVILGHEGAGIVESVGEGVT   75 (365)
T ss_pred             CccEEEEEccCCCC---cEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC--CCCCeecccceeEEEEeeCCCCc
Confidence            36899999987765   88999999999999999999999999999999998765  35789999999999999999999


Q ss_pred             CCCCCCEEEecCC----------------------------------------------CCCcccceEeecccceEEcCC
Q psy2960         151 SLAVGDHVIPDTQ----------------------------------------------HLGTWRNYGKFNHDVLMKVPK  184 (405)
Q Consensus       151 ~~~~GdrV~~~~~----------------------------------------------~~G~~a~~~~v~~~~~~~iP~  184 (405)
                      ++++||||++.+.                                              ..|+|+||+.++...++++|+
T Consensus        76 ~~~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~  155 (365)
T cd08277          76 NLKPGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHFLGTSTFSQYTVVDENYVAKIDP  155 (365)
T ss_pred             cCCCCCEEEECCCCCCCCCchhcCcCcccCcCccccccccccCCccccccCCcccccccccccceeeEEEchhheEECCC
Confidence            9999999987521                                              147899999999999999999


Q ss_pred             CCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCcchHHHHHHHHHcCC
Q psy2960         185 DIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGA  263 (405)
Q Consensus       185 ~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~~~~~~~~~~~~lg~  263 (405)
                      ++++++|+++++++.|||+++...+++++|++|||+|+ |++|++++|+|+++|++ ++++.++    +++++.++++|+
T Consensus       156 ~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~-g~vG~~~~~~a~~~G~~~Vi~~~~~----~~~~~~~~~~ga  230 (365)
T cd08277         156 AAPLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGL-GAVGLSAIMGAKIAGASRIIGVDIN----EDKFEKAKEFGA  230 (365)
T ss_pred             CCCHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCC----HHHHHHHHHcCC
Confidence            99999999999999999999877789999999999986 99999999999999994 6666543    445788899999


Q ss_pred             cEEeChhh----HHH-HhhhcCCCCCcEEEECCCch-hHHHHHHhcccC-CEEEEEeccCCCCcccCcccccccCeEEEE
Q psy2960         264 DYVFTEEE----LRN-ISRDASIPKPKLALNCVGGN-SATNLLRTLVSK-GVMVTYGGMSREPVQIPTSAFIFKDITLRG  336 (405)
Q Consensus       264 ~~v~~~~d----~~~-i~~~t~g~g~Dvvld~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g  336 (405)
                      +++++.++    +.+ +++.++ +++|+||||+|+. .+..++++++++ |+++.+|.......+++...++ +++++.|
T Consensus       231 ~~~i~~~~~~~~~~~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~i~g  308 (365)
T cd08277         231 TDFINPKDSDKPVSEVIREMTG-GGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPGAELSIRPFQLI-LGRTWKG  308 (365)
T ss_pred             CcEeccccccchHHHHHHHHhC-CCCCEEEECCCChHHHHHHHHhcccCCCEEEEEcCCCccccccCHhHHh-hCCEEEe
Confidence            99998653    344 777776 6899999999964 456789999885 9999999654333344444454 3889998


Q ss_pred             EecchhhhhhccHHHHHHHHHHHHHHHHcCccc--CCcceeeehhhHHHHHHHHhhhcCCCCceEEEE
Q psy2960         337 HWMTRWQKENKESAERKSMMNELTEMMRTGKLA--APAHKFVTLKNFQEALMNTMSIQGKSGVKYYID  402 (405)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~--~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~  402 (405)
                      ++.+.+..        ...+++++++++++.++  +.++++|+++|+++||+.+.  +++ ..|++|+
T Consensus       309 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~--~~~-~~k~~i~  365 (365)
T cd08277         309 SFFGGFKS--------RSDVPKLVSKYMNKKFDLDELITHVLPFEEINKGFDLMK--SGE-CIRTVIT  365 (365)
T ss_pred             eecCCCCh--------HHHHHHHHHHHHCCCcChhHheeeEEchhhHHHHHHHHH--CCC-CceEeeC
Confidence            87765321        23477889999998766  45789999999999999988  666 5698874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=100.00  E-value=1.3e-44  Score=352.31  Aligned_cols=308  Identities=19%  Similarity=0.232  Sum_probs=244.0

Q ss_pred             ceeEEEEccCCCCccceEeeeecCCCCC-------CCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEE
Q psy2960          72 LANKLVYNQHGTPLRVVTVENETLNSVQ-------KHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVE  144 (405)
Q Consensus        72 ~~~a~~~~~~g~~~~~l~~~~~~~p~~~-------~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~  144 (405)
                      -||++++.++++    +++++.|.|+|+       +|||||||.++|||++|++++.|.++.  .+|.++|||++|+|++
T Consensus         2 ~mka~v~~~~~~----~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~~--~~p~i~GhE~~G~V~~   75 (393)
T TIGR02819         2 GNRGVVYLGPGK----VEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTTA--PTGLVLGHEITGEVIE   75 (393)
T ss_pred             CceEEEEecCCc----eeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCCC--CCCccccceeEEEEEE
Confidence            489999998876    888999999874       689999999999999999999886543  5689999999999999


Q ss_pred             EcCCCCCCCCCCEEEecC------------------------------------CCCCcccceEeeccc--ceEEcCCCC
Q psy2960         145 VGSDVSSLAVGDHVIPDT------------------------------------QHLGTWRNYGKFNHD--VLMKVPKDI  186 (405)
Q Consensus       145 vG~~v~~~~~GdrV~~~~------------------------------------~~~G~~a~~~~v~~~--~~~~iP~~~  186 (405)
                      +|++|++|++||||+..+                                    ..+|+|+||+.++..  .++++|+++
T Consensus        76 vG~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~l~~vP~~~  155 (393)
T TIGR02819        76 KGRDVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGWVGGQSEYVMVPYADFNLLKFPDRD  155 (393)
T ss_pred             EcCccccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccCCCCCceEEEEEechhhCceEECCCcc
Confidence            999999999999997631                                    014899999999964  799999987


Q ss_pred             Ch----hhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcC
Q psy2960         187 AL----TEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG  262 (405)
Q Consensus       187 s~----~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg  262 (405)
                      +.    .+++++.+++.|+|+++.. +++++|++|||.|+ |++|++++|+|+++|++++++++.   .+++++.++++|
T Consensus       156 ~~~~~~~~~a~l~~~~~ta~~a~~~-~~~~~g~~VlV~G~-G~iG~~aiqlAk~~Ga~~vi~~d~---~~~r~~~a~~~G  230 (393)
T TIGR02819       156 QALEKIRDLTMLSDIFPTGYHGAVT-AGVGPGSTVYIAGA-GPVGLAAAASAQLLGAAVVIVGDL---NPARLAQARSFG  230 (393)
T ss_pred             cccccccceeeeccHHHHHHHHHHh-cCCCCCCEEEEECC-CHHHHHHHHHHHHcCCceEEEeCC---CHHHHHHHHHcC
Confidence            54    4567888889999999865 78999999999766 999999999999999998776533   355789999999


Q ss_pred             CcEEeChh--hHHH-HhhhcCCCCCcEEEECCCch---------------hHHHHHHhcccCCEEEEEeccCC-CCccc-
Q psy2960         263 ADYVFTEE--ELRN-ISRDASIPKPKLALNCVGGN---------------SATNLLRTLVSKGVMVTYGGMSR-EPVQI-  322 (405)
Q Consensus       263 ~~~v~~~~--d~~~-i~~~t~g~g~Dvvld~~g~~---------------~~~~~~~~l~~~G~~v~~g~~~~-~~~~~-  322 (405)
                      ++.+.+.+  ++.+ +.+.+++.++|++|||+|.+               .+..++++++++|+++.+|.... ..... 
T Consensus       231 a~~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~~~~~~~~~~  310 (393)
T TIGR02819       231 CETVDLSKDATLPEQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLYVTEDPGAVD  310 (393)
T ss_pred             CeEEecCCcccHHHHHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeecCCccccccc
Confidence            98654432  3555 77888888999999999985               46778999999999999996532 21111 


Q ss_pred             ----------CcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccC--Ccc-eeeehhhHHHHHHHHh
Q psy2960         323 ----------PTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA--PAH-KFVTLKNFQEALMNTM  389 (405)
Q Consensus       323 ----------~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~-~~~~~~~~~~A~~~~~  389 (405)
                                .....+.+++++.+....           ..+.+.++++++++|++++  .++ ++|+|+|+++||+.+.
T Consensus       311 ~~~~~~~~~i~~~~~~~~~~~i~g~~~~-----------~~~~~~~~~~~~~~g~i~~~~~i~~~~~~l~~~~~a~~~~~  379 (393)
T TIGR02819       311 AAAKTGSLSIRFGLGWAKSHSFHTGQTP-----------VMKYNRNLMQAILHDRVQIAKAVNVTVISLDDAPEGYAEFD  379 (393)
T ss_pred             ccccccccccchHHhhccCceEEeccCC-----------hhhhHHHHHHHHHcCCCCHHHceecceecHHHHHHHHHHHh
Confidence                      122233445555542110           0123467899999999875  355 7899999999999998


Q ss_pred             hhcCCCCceEEEEec
Q psy2960         390 SIQGKSGVKYYIDFR  404 (405)
Q Consensus       390 ~~~~~~~gKvvl~~~  404 (405)
                        +++ .+|++|+++
T Consensus       380 --~~~-~~Kvvi~~~  391 (393)
T TIGR02819       380 --AGA-AKKFVIDPH  391 (393)
T ss_pred             --hCC-ceEEEEeCC
Confidence              664 589999874

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=2.7e-44  Score=346.14  Aligned_cols=310  Identities=21%  Similarity=0.231  Sum_probs=250.5

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCC-CCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSV-QKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSS  151 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~-~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~  151 (405)
                      ||++++++++.    +++.+.|.|+| +++||+|||.++|+|++|++...+...  ..+|.++|||++|+|+++|+++++
T Consensus         1 Mka~~~~~~~~----~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~~--~~~p~i~G~e~~G~V~~vG~~v~~   74 (347)
T PRK10309          1 MKSVVNDTDGI----VRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNGA--HYYPITLGHEFSGYVEAVGSGVDD   74 (347)
T ss_pred             CceEEEeCCCc----eEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCCC--CCCCcccccceEEEEEEeCCCCCC
Confidence            78999998765    88999999997 699999999999999999975432111  135789999999999999999999


Q ss_pred             CCCCCEEEecC--------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHH
Q psy2960         152 LAVGDHVIPDT--------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRML  205 (405)
Q Consensus       152 ~~~GdrV~~~~--------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al  205 (405)
                      |++||||++.+                          ...|+|+||+.++++.++++|+++++++|+.++ .+.++++++
T Consensus        75 ~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~lP~~~s~~~aa~~~-~~~~~~~~~  153 (347)
T PRK10309         75 LHPGDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGSRRDGGNAEYIVVKRKNLFALPTDMPIEDGAFIE-PITVGLHAF  153 (347)
T ss_pred             CCCCCEEEECCCcCCCCCcchhCcCcccCCCcceeccCCCCccceeEEeehHHeEECcCCCCHHHhhhhh-HHHHHHHHH
Confidence            99999999753                          125899999999999999999999999999875 456678886


Q ss_pred             HhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcE-EEEecCCcchHHHHHHHHHcCCcEEeChhhH-HH-HhhhcCCC
Q psy2960         206 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKT-INIVRNRDDIDKLKSYLKSLGADYVFTEEEL-RN-ISRDASIP  282 (405)
Q Consensus       206 ~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v-~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~-~~-i~~~t~g~  282 (405)
                       ....+++|++|||+|+ |++|++++|+|+.+|+++ +++.++    +++++.++++|+++++++++. .+ +.+.+.+.
T Consensus       154 -~~~~~~~g~~vlV~G~-g~vG~~~~~~a~~~G~~~v~~~~~~----~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~  227 (347)
T PRK10309        154 -HLAQGCEGKNVIIIGA-GTIGLLAIQCAVALGAKSVTAIDIN----SEKLALAKSLGAMQTFNSREMSAPQIQSVLREL  227 (347)
T ss_pred             -HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCC----HHHHHHHHHcCCceEecCcccCHHHHHHHhcCC
Confidence             4478899999999986 999999999999999985 555433    345778899999999986532 23 77777777


Q ss_pred             CCc-EEEECCCch-hHHHHHHhcccCCEEEEEeccCCCCcccC---cccccccCeEEEEEecchhhhhhccHHHHHHHHH
Q psy2960         283 KPK-LALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIP---TSAFIFKDITLRGHWMTRWQKENKESAERKSMMN  357 (405)
Q Consensus       283 g~D-vvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~---~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~  357 (405)
                      ++| ++|||+|++ .+..++++++++|+++.+|.... +.+++   ...++.+++++.|++.+.....      ..+.++
T Consensus       228 ~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~-~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~------~~~~~~  300 (347)
T PRK10309        228 RFDQLILETAGVPQTVELAIEIAGPRAQLALVGTLHH-DLHLTSATFGKILRKELTVIGSWMNYSSPW------PGQEWE  300 (347)
T ss_pred             CCCeEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCC-CcccChhhhhHHhhcCcEEEEEeccccCCc------chhHHH
Confidence            898 999999985 55778999999999999996542 22222   2356679999999876421110      124577


Q ss_pred             HHHHHHHcCccc--CCcceeeehhhHHHHHHHHhhhcCCCCceEEEEec
Q psy2960         358 ELTEMMRTGKLA--APAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       358 ~~~~~~~~g~l~--~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                      ++++++++|+++  +.++++|+|+|+++||+.+.  +++..||+|++++
T Consensus       301 ~~~~~~~~g~i~~~~~i~~~~~l~~~~~A~~~~~--~~~~~gKvvv~~~  347 (347)
T PRK10309        301 TASRLLTERKLSLEPLIAHRGSFESFAQAVRDLA--GNPMPGKVLLQIP  347 (347)
T ss_pred             HHHHHHHcCCCCchhheEEEeeHHHHHHHHHHHh--cCCcceEEEEeCC
Confidence            888999999985  55889999999999999999  7888899999874

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=100.00  E-value=3.1e-44  Score=344.50  Aligned_cols=312  Identities=21%  Similarity=0.233  Sum_probs=254.6

Q ss_pred             eeEEEEccCCCCccceEeeeecC----CCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccce--EEEEEEEc
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETL----NSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEG--VGEVVEVG  146 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~----p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~--~G~V~~vG  146 (405)
                      +|+|....+.  .+.+++.+.|+    |+|++|||||||+|+|||+.|++...|..+....+|+++|+++  .|++..+|
T Consensus         8 ~~~~~~~~~~--~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v~   85 (338)
T cd08295           8 LKAYVTGFPK--ESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVD   85 (338)
T ss_pred             EecCCCCCCC--ccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEEe
Confidence            4555533333  35699999988    8899999999999999999999999885432124578899865  45666688


Q ss_pred             CCCCCCCCCCEEEecCCCCCcccceEeecc-cceEEcC-CCCChh-hhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCC
Q psy2960         147 SDVSSLAVGDHVIPDTQHLGTWRNYGKFNH-DVLMKVP-KDIALT-EISGITSNPCTAYRMLKDYNSLSPGDVVIQNGAN  223 (405)
Q Consensus       147 ~~v~~~~~GdrV~~~~~~~G~~a~~~~v~~-~~~~~iP-~~~s~~-~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~  223 (405)
                      +++++|++||+|+++    |+|+||+++++ ..++++| ++++++ ++++++++++|||+++.+.+++++|++|||+|++
T Consensus        86 ~~v~~~~vGd~V~~~----g~~aey~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~  161 (338)
T cd08295          86 SGNPDFKVGDLVWGF----TGWEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAAS  161 (338)
T ss_pred             cCCCCCCCCCEEEec----CCceeEEEecchhceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCc
Confidence            999999999999977    78999999999 7999995 678887 7999999999999999888899999999999999


Q ss_pred             cHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH-cCCcEEeChh---hHHH-HhhhcCCCCCcEEEECCCchhHHH
Q psy2960         224 SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADYVFTEE---ELRN-ISRDASIPKPKLALNCVGGNSATN  298 (405)
Q Consensus       224 G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~-lg~~~v~~~~---d~~~-i~~~t~g~g~Dvvld~~g~~~~~~  298 (405)
                      |++|++++|+|+.+|+++++++++++    +.+.+++ +|+++++++.   ++.+ +.+.++ .++|++||++|+.....
T Consensus       162 G~vG~~aiqlAk~~G~~Vi~~~~~~~----~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~-~gvd~v~d~~g~~~~~~  236 (338)
T cd08295         162 GAVGQLVGQLAKLKGCYVVGSAGSDE----KVDLLKNKLGFDDAFNYKEEPDLDAALKRYFP-NGIDIYFDNVGGKMLDA  236 (338)
T ss_pred             cHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHhcCCceeEEcCCcccHHHHHHHhCC-CCcEEEEECCCHHHHHH
Confidence            99999999999999999998886643    4677777 9999999853   4555 676664 78999999999988888


Q ss_pred             HHHhcccCCEEEEEeccCCCCc-----ccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcc
Q psy2960         299 LLRTLVSKGVMVTYGGMSREPV-----QIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAH  373 (405)
Q Consensus       299 ~~~~l~~~G~~v~~g~~~~~~~-----~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~  373 (405)
                      ++++++++|+++.+|.......     ..+...++.+++++.+++...+.      +...+.++++++++++|++++.+.
T Consensus       237 ~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~------~~~~~~~~~~~~l~~~g~l~~~~~  310 (338)
T cd08295         237 VLLNMNLHGRIAACGMISQYNLEWPEGVRNLLNIIYKRVKIQGFLVGDYL------HRYPEFLEEMSGYIKEGKLKYVED  310 (338)
T ss_pred             HHHHhccCcEEEEecccccCCCCCCCCccCHHHHhhccceeeEEEehhhH------HHHHHHHHHHHHHHHCCCeEceee
Confidence            9999999999999985433211     12234456688888887654321      223456888999999999998777


Q ss_pred             eeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         374 KFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       374 ~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      ..|+++++++||+.+.  +++..||+|+++
T Consensus       311 ~~~~l~~~~~A~~~~~--~~~~~GkvVl~~  338 (338)
T cd08295         311 IADGLESAPEAFVGLF--TGSNIGKQVVKV  338 (338)
T ss_pred             cccCHHHHHHHHHHHh--cCCCCceEEEEC
Confidence            7899999999999999  888899999874

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=100.00  E-value=3.5e-44  Score=339.30  Aligned_cols=294  Identities=18%  Similarity=0.204  Sum_probs=238.2

Q ss_pred             ceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecC-hhhhhhhcccCCCC--CCCCCCCccceEEEEEEEcCC
Q psy2960          72 LANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVN-PADINTIQGVYPIK--PTLPAVPGFEGVGEVVEVGSD  148 (405)
Q Consensus        72 ~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~-~~D~~~~~g~~~~~--~~~p~~lG~E~~G~V~~vG~~  148 (405)
                      +||++++.+++.    +++++.|.|+|+++||||||.++||| ++|++.+.|.++..  ..+|.++|||++|+|+++|++
T Consensus         1 ~~ka~~~~~~~~----l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~   76 (308)
T TIGR01202         1 KTQAIVLSGPNQ----IELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPD   76 (308)
T ss_pred             CceEEEEeCCCe----EEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCC
Confidence            588999987664    89999999999999999999999996 79999998876532  257999999999999999999


Q ss_pred             CCCCCCCCEEEecCC--------CCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEe
Q psy2960         149 VSSLAVGDHVIPDTQ--------HLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQN  220 (405)
Q Consensus       149 v~~~~~GdrV~~~~~--------~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~  220 (405)
                      + +|++||||+....        ..|+|+||+.++++.++++|++++++. ++++ .+.|||+++.. . ..+|++|||+
T Consensus        77 v-~~~vGdrV~~~~~~c~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~-a~~~-~~~~a~~~~~~-~-~~~~~~vlV~  151 (308)
T TIGR01202        77 T-GFRPGDRVFVPGSNCYEDVRGLFGGASKRLVTPASRVCRLDPALGPQG-ALLA-LAATARHAVAG-A-EVKVLPDLIV  151 (308)
T ss_pred             C-CCCCCCEEEEeCccccccccccCCcccceEEcCHHHceeCCCCCCHHH-Hhhh-HHHHHHHHHHh-c-ccCCCcEEEE
Confidence            8 6999999986321        259999999999999999999999864 5554 57899999965 3 3468999999


Q ss_pred             CCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCCchh-HHHH
Q psy2960         221 GANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNS-ATNL  299 (405)
Q Consensus       221 ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~~~-~~~~  299 (405)
                      |+ |++|++++|+|+++|++++++++..   +++++.+.+   ..++|+++.       .+.++|+||||+|++. +..+
T Consensus       152 G~-G~vG~~a~q~ak~~G~~~v~~~~~~---~~rl~~a~~---~~~i~~~~~-------~~~g~Dvvid~~G~~~~~~~~  217 (308)
T TIGR01202       152 GH-GTLGRLLARLTKAAGGSPPAVWETN---PRRRDGATG---YEVLDPEKD-------PRRDYRAIYDASGDPSLIDTL  217 (308)
T ss_pred             CC-CHHHHHHHHHHHHcCCceEEEeCCC---HHHHHhhhh---ccccChhhc-------cCCCCCEEEECCCCHHHHHHH
Confidence            86 9999999999999999987776432   344554443   345554321       2468999999999865 5778


Q ss_pred             HHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccC--Ccceeee
Q psy2960         300 LRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA--PAHKFVT  377 (405)
Q Consensus       300 ~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~  377 (405)
                      +++++++|+++.+|... .+..++...++.|++++.++....           .+.++++++++++|++++  .++++||
T Consensus       218 ~~~l~~~G~iv~~G~~~-~~~~~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~~l~~~g~i~~~~~it~~~~  285 (308)
T TIGR01202       218 VRRLAKGGEIVLAGFYT-EPVNFDFVPAFMKEARLRIAAEWQ-----------PGDLHAVRELIESGALSLDGLITHQRP  285 (308)
T ss_pred             HHhhhcCcEEEEEeecC-CCcccccchhhhcceEEEEecccc-----------hhHHHHHHHHHHcCCCChhhccceeec
Confidence            99999999999999643 334566666778899998865432           345888999999999986  4789999


Q ss_pred             hhhHHHHHHHHhhhcCCCCceEEEE
Q psy2960         378 LKNFQEALMNTMSIQGKSGVKYYID  402 (405)
Q Consensus       378 ~~~~~~A~~~~~~~~~~~~gKvvl~  402 (405)
                      |+|+++||+.+.  ++...+|++|+
T Consensus       286 l~~~~~A~~~~~--~~~~~~Kv~~~  308 (308)
T TIGR01202       286 ASDAAEAYMTAF--SDPDCLKMILD  308 (308)
T ss_pred             HHHHHHHHHHHh--cCcCceEEEeC
Confidence            999999999888  66778999974

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=100.00  E-value=5.8e-44  Score=343.99  Aligned_cols=304  Identities=19%  Similarity=0.257  Sum_probs=253.2

Q ss_pred             EEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCCCCC
Q psy2960          76 LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVG  155 (405)
Q Consensus        76 ~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~~G  155 (405)
                      ++++++|++   +++++.|.|.|+++||+|||.++|||++|++.+.+.+.....+|.++|||++|+|+++|++++.+ +|
T Consensus         2 ~~~~~~g~~---~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~G   77 (349)
T TIGR03201         2 WMMTEPGKP---MVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IG   77 (349)
T ss_pred             ceEecCCCC---ceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CC
Confidence            456677764   78899999999999999999999999999998754332223568999999999999999999887 99


Q ss_pred             CEEEecC--------------------------CCCCcccceEeecccceEEcCC------CCChhhhccCCCcHHHHHH
Q psy2960         156 DHVIPDT--------------------------QHLGTWRNYGKFNHDVLMKVPK------DIALTEISGITSNPCTAYR  203 (405)
Q Consensus       156 drV~~~~--------------------------~~~G~~a~~~~v~~~~~~~iP~------~~s~~~Aa~~~~~~~ta~~  203 (405)
                      |||+..+                          ...|+|+||+.++.+.++++|+      ++++++++++++++.|+|+
T Consensus        78 drV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~G~~ae~~~v~~~~~~~ip~~~~~~~~~~~~~~a~~~~~~~ta~~  157 (349)
T TIGR03201        78 KAVIVPAVIPCGECELCKTGRGTICRAQKMPGNDMQGGFASHIVVPAKGLCVVDEARLAAAGLPLEHVSVVADAVTTPYQ  157 (349)
T ss_pred             CEEEECCCCCCCCChhhhCcCcccCCCCCccCcCCCCcccceEEechHHeEECCcccccccCCCHHHhhhhcchHHHHHH
Confidence            9998631                          0258999999999999999999      8999999999999999999


Q ss_pred             HHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChh-----hHHH-Hhh
Q psy2960         204 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE-----ELRN-ISR  277 (405)
Q Consensus       204 al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~-----d~~~-i~~  277 (405)
                      ++.. .++++|++|+|+|+ |++|++++|+|+++|++++++.++    +++++.++++|+++++++.     ++.+ +++
T Consensus       158 a~~~-~~~~~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~~~~----~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~  231 (349)
T TIGR03201       158 AAVQ-AGLKKGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAIDID----PEKLEMMKGFGADLTLNPKDKSAREVKKLIKA  231 (349)
T ss_pred             HHHh-cCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEcCC----HHHHHHHHHhCCceEecCccccHHHHHHHHHh
Confidence            9975 78999999999999 999999999999999998887644    3457888999999998753     3444 777


Q ss_pred             hcCCCCCc----EEEECCCchhH-HHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHH
Q psy2960         278 DASIPKPK----LALNCVGGNSA-TNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAER  352 (405)
Q Consensus       278 ~t~g~g~D----vvld~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~  352 (405)
                      .|++.|+|    +||||+|+... ..++++++++|+++.+|.... ...++...++.++.++.|.+...           
T Consensus       232 ~t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G~~~~-~~~~~~~~~~~~~~~~~g~~~~~-----------  299 (349)
T TIGR03201       232 FAKARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVVGYTMA-KTEYRLSNLMAFHARALGNWGCP-----------  299 (349)
T ss_pred             hcccCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEECcCCC-CcccCHHHHhhcccEEEEEecCC-----------
Confidence            88888887    89999998655 467999999999999996532 23455556667788888877432           


Q ss_pred             HHHHHHHHHHHHcCcccCC-cceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         353 KSMMNELTEMMRTGKLAAP-AHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       353 ~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      .+.++++++++++|++++. +.+.|+|+++++||+.+.  +++..||+++++
T Consensus       300 ~~~~~~~~~~i~~g~i~~~~~i~~~~l~~~~~A~~~~~--~~~~~~k~~~~~  349 (349)
T TIGR03201       300 PDRYPAALDLVLDGKIQLGPFVERRPLDQIEHVFAAAH--HHKLKRRAILTP  349 (349)
T ss_pred             HHHHHHHHHHHHcCCCCcccceEEecHHHHHHHHHHHH--cCCccceEEecC
Confidence            2357889999999999763 445799999999999999  888899999864

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08293 PTGR2 Prostaglandin reductase

Probab=100.00  E-value=2.3e-43  Score=339.48  Aligned_cols=302  Identities=21%  Similarity=0.289  Sum_probs=239.2

Q ss_pred             cceEeeeecCCCCC-CCeEEEEEEEeecChhhhhhhcccC--CCCCCCCCCCccceEEEEEEEcCCCCCCCCCCEEEecC
Q psy2960          86 RVVTVENETLNSVQ-KHEVVVKMLVAPVNPADINTIQGVY--PIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDT  162 (405)
Q Consensus        86 ~~l~~~~~~~p~~~-~~eVlVkv~a~gi~~~D~~~~~g~~--~~~~~~p~~lG~E~~G~V~~vG~~v~~~~~GdrV~~~~  162 (405)
                      +.+++.+.|.|+|. +|||||||+|+|||+.|........  .....+|.++|||++|+|+++|++|++|++||||+++.
T Consensus        21 ~~~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~  100 (345)
T cd08293          21 ENFRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSFN  100 (345)
T ss_pred             cceEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEecC
Confidence            66899999999874 9999999999999999964332111  11124678999999999999999999999999999872


Q ss_pred             CCCCcccceEeecccceEEcCCCCChhh----hccCCCcHHHHHHHHHhhcCCCCC--CEEEEeCCCcHHHHHHHHHHHH
Q psy2960         163 QHLGTWRNYGKFNHDVLMKVPKDIALTE----ISGITSNPCTAYRMLKDYNSLSPG--DVVIQNGANSACGQNVIQIARH  236 (405)
Q Consensus       163 ~~~G~~a~~~~v~~~~~~~iP~~~s~~~----Aa~~~~~~~ta~~al~~~~~~~~g--~~VLI~ga~G~vG~~aiqla~~  236 (405)
                         ++|+||++++++.++++|+++++++    +++++.+++|||+++.+.+++++|  ++|||+|++|++|++++|+|++
T Consensus       101 ---~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~  177 (345)
T cd08293         101 ---WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRL  177 (345)
T ss_pred             ---CCceeEEEecHHHeEEcCccccccchhHHhhhcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHH
Confidence               6899999999999999999865443    567788999999999887889887  9999999999999999999999


Q ss_pred             cCC-cEEEEecCCcchHHHHHHHHH-cCCcEEeChh--hHHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEE
Q psy2960         237 WGL-KTINIVRNRDDIDKLKSYLKS-LGADYVFTEE--ELRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVT  311 (405)
Q Consensus       237 ~G~-~v~~~~~~~~~~~~~~~~~~~-lg~~~v~~~~--d~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~  311 (405)
                      +|+ ++++++++++    +.+.+++ +|++++++++  ++.+ +++.++ +++|++|||+|+.....++++++++|+++.
T Consensus       178 ~G~~~Vi~~~~s~~----~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~-~gvd~vid~~g~~~~~~~~~~l~~~G~iv~  252 (345)
T cd08293         178 LGCSRVVGICGSDE----KCQLLKSELGFDAAINYKTDNVAERLRELCP-EGVDVYFDNVGGEISDTVISQMNENSHIIL  252 (345)
T ss_pred             cCCCEEEEEcCCHH----HHHHHHHhcCCcEEEECCCCCHHHHHHHHCC-CCceEEEECCCcHHHHHHHHHhccCCEEEE
Confidence            999 7888876543    4566665 9999999865  3555 777775 789999999999888889999999999999


Q ss_pred             EeccCCC--CcccCc------cc-ccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHH
Q psy2960         312 YGGMSRE--PVQIPT------SA-FIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQ  382 (405)
Q Consensus       312 ~g~~~~~--~~~~~~------~~-~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~  382 (405)
                      +|.....  +...+.      .. ...+++++.++.....      +....+.++++.+++++|.+++.+...+++++++
T Consensus       253 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~g~i~~~~~~~~~l~~~~  326 (345)
T cd08293         253 CGQISQYNKDVPYPPPLPEATEAILKERNITRERFLVLNY------KDKFEEAIAQLSQWVKEGKLKVKETVYEGLENAG  326 (345)
T ss_pred             EeeeecccCccCccccccchhHHHhhhcceEEEEEEeecc------HhHHHHHHHHHHHHHHCCCccceeEEeecHHHHH
Confidence            9853211  111110      11 1234555544432221      1334566888999999999998766678999999


Q ss_pred             HHHHHHhhhcCCCCceEEEEe
Q psy2960         383 EALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       383 ~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      +||+.+.  +++..||+|+++
T Consensus       327 ~A~~~~~--~~~~~gkvvl~~  345 (345)
T cd08293         327 EAFQSMM--NGGNIGKQIVKV  345 (345)
T ss_pred             HHHHHHh--cCCCCCeEEEEC
Confidence            9999999  888899999975

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=100.00  E-value=1.4e-43  Score=338.67  Aligned_cols=308  Identities=24%  Similarity=0.332  Sum_probs=253.3

Q ss_pred             ceeEEEEccC--CCC-ccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCC
Q psy2960          72 LANKLVYNQH--GTP-LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSD  148 (405)
Q Consensus        72 ~~~a~~~~~~--g~~-~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~  148 (405)
                      +||+|++.++  |++ .+.+++++.|.|+|++|||||||.++|||+.|.....+  +  ..+|.++|+|++|+|++   .
T Consensus         2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~~--~--~~~p~v~G~e~~G~V~~---~   74 (329)
T cd08294           2 KAKTWVLKKHFDGKPKESDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSKR--L--NEGDTMIGTQVAKVIES---K   74 (329)
T ss_pred             CceEEEEecCCCCCCCccceEEEecCCCCCCCCcEEEEEEEEecCHHHhccccc--C--CCCCcEecceEEEEEec---C
Confidence            5999999993  443 26799999999999999999999999999988653221  1  13588999999999985   5


Q ss_pred             CCCCCCCCEEEecCCCCCcccceEeeccc---ceEEcCCCCC--h---hhhccCCCcHHHHHHHHHhhcCCCCCCEEEEe
Q psy2960         149 VSSLAVGDHVIPDTQHLGTWRNYGKFNHD---VLMKVPKDIA--L---TEISGITSNPCTAYRMLKDYNSLSPGDVVIQN  220 (405)
Q Consensus       149 v~~~~~GdrV~~~~~~~G~~a~~~~v~~~---~~~~iP~~~s--~---~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~  220 (405)
                      +++|++||||++.    ++|++|+.++.+   .++++|++++  +   ..+++++++++|||+++...+++++|++|||+
T Consensus        75 ~~~~~~Gd~V~~~----~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~  150 (329)
T cd08294          75 NSKFPVGTIVVAS----FGWRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVN  150 (329)
T ss_pred             CCCCCCCCEEEee----CCeeeEEEECCccccceEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEe
Confidence            5789999999976    589999999999   9999999998  2   33357889999999999888999999999999


Q ss_pred             CCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChh--hHHH-HhhhcCCCCCcEEEECCCchhHH
Q psy2960         221 GANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIPKPKLALNCVGGNSAT  297 (405)
Q Consensus       221 ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~--d~~~-i~~~t~g~g~Dvvld~~g~~~~~  297 (405)
                      |++|++|++++|+|+.+|+++++++++++    +.+.++++|++++++++  ++.+ +++.++ +++|++||++|++...
T Consensus       151 ga~g~vG~~aiqlA~~~G~~vi~~~~s~~----~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~-~gvd~vld~~g~~~~~  225 (329)
T cd08294         151 GAAGAVGSLVGQIAKIKGCKVIGCAGSDD----KVAWLKELGFDAVFNYKTVSLEEALKEAAP-DGIDCYFDNVGGEFSS  225 (329)
T ss_pred             cCccHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHcCCCEEEeCCCccHHHHHHHHCC-CCcEEEEECCCHHHHH
Confidence            99999999999999999999998886643    47888899999999875  3555 776665 7899999999998888


Q ss_pred             HHHHhcccCCEEEEEeccCCCCc------ccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCC
Q psy2960         298 NLLRTLVSKGVMVTYGGMSREPV------QIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAP  371 (405)
Q Consensus       298 ~~~~~l~~~G~~v~~g~~~~~~~------~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~  371 (405)
                      .++++++++|+++.+|.......      ......+..+++++.+++...+.      ....+.++++++++++|.+++.
T Consensus       226 ~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~~~~l~~~g~i~~~  299 (329)
T cd08294         226 TVLSHMNDFGRVAVCGSISTYNDKEPKKGPYVQETIIFKQLKMEGFIVYRWQ------DRWPEALKQLLKWIKEGKLKYR  299 (329)
T ss_pred             HHHHhhccCCEEEEEcchhccCCCCCCcCcccHHHHhhhcceEEEEEhhhhH------HHHHHHHHHHHHHHHCCCCcCC
Confidence            89999999999999985322111      11223455688899887654321      2335678889999999999987


Q ss_pred             cceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         372 AHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       372 ~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      +..+|+++++++||+.+.  +++..||+|+++
T Consensus       300 ~~~~~~l~~~~~A~~~~~--~~~~~gkvvv~~  329 (329)
T cd08294         300 EHVTEGFENMPQAFIGML--KGENTGKAIVKV  329 (329)
T ss_pred             cccccCHHHHHHHHHHHH--cCCCCCeEEEeC
Confidence            777899999999999999  889999999974

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=100.00  E-value=1.2e-43  Score=342.20  Aligned_cols=304  Identities=21%  Similarity=0.319  Sum_probs=254.1

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhccc-CCC---------CCCCCCCCccceEEEE
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGV-YPI---------KPTLPAVPGFEGVGEV  142 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~-~~~---------~~~~p~~lG~E~~G~V  142 (405)
                      ||++++++++.    +++++.|.|+|+++||+||+.++++|++|++.+.+. ...         ...+|.++|||++|+|
T Consensus         1 mka~~~~~~~~----l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V   76 (351)
T cd08233           1 MKAARYHGRKD----IRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVV   76 (351)
T ss_pred             CceEEEecCCc----eEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEE
Confidence            78999998764    889999999999999999999999999999876542 111         0136899999999999


Q ss_pred             EEEcCCCCCCCCCCEEEecCC---------------------------CCCcccceEeecccceEEcCCCCChhhhccCC
Q psy2960         143 VEVGSDVSSLAVGDHVIPDTQ---------------------------HLGTWRNYGKFNHDVLMKVPKDIALTEISGIT  195 (405)
Q Consensus       143 ~~vG~~v~~~~~GdrV~~~~~---------------------------~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~  195 (405)
                      +++|+++++|++||+|++...                           ..|+|++|+.++...++++|+++++++|+.+ 
T Consensus        77 ~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~-  155 (351)
T cd08233          77 VEVGSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGFIGLGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALV-  155 (351)
T ss_pred             EEeCCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCceeccCCCCCceeeEEEechHHeEECcCCCCHHHhhhc-
Confidence            999999999999999997321                           1589999999999999999999999999876 


Q ss_pred             CcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHcCCcEEeChhh--H
Q psy2960         196 SNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--L  272 (405)
Q Consensus       196 ~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~  272 (405)
                      .++.|||+++ ..+++++|++|||+|+ |++|++++|+|+.+|+ +++++.+++    ++.+.++++|++.++++++  +
T Consensus       156 ~~~~ta~~~l-~~~~~~~g~~vlI~g~-g~vG~~a~q~a~~~G~~~v~~~~~~~----~~~~~~~~~ga~~~i~~~~~~~  229 (351)
T cd08233         156 EPLAVAWHAV-RRSGFKPGDTALVLGA-GPIGLLTILALKAAGASKIIVSEPSE----ARRELAEELGATIVLDPTEVDV  229 (351)
T ss_pred             cHHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCH----HHHHHHHHhCCCEEECCCccCH
Confidence            6788999999 5689999999999986 8999999999999999 566665443    3467778899999998754  5


Q ss_pred             HH-HhhhcCCCCCcEEEECCCc-hhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHH
Q psy2960         273 RN-ISRDASIPKPKLALNCVGG-NSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESA  350 (405)
Q Consensus       273 ~~-i~~~t~g~g~Dvvld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~  350 (405)
                      .+ +++.++++++|++|||+|+ .....++++++++|+++.+|... .+..++...++.+++++.+++...         
T Consensus       230 ~~~l~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~g~~~~~---------  299 (351)
T cd08233         230 VAEVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPRGTAVNVAIWE-KPISFNPNDLVLKEKTLTGSICYT---------  299 (351)
T ss_pred             HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCCCEEEEEccCC-CCCccCHHHHHhhCcEEEEEeccC---------
Confidence            55 8888878889999999986 45677899999999999999654 344566666778999999986532         


Q ss_pred             HHHHHHHHHHHHHHcCcccC--CcceeeehhhH-HHHHHHHhhhcCCCC-ceEEE
Q psy2960         351 ERKSMMNELTEMMRTGKLAA--PAHKFVTLKNF-QEALMNTMSIQGKSG-VKYYI  401 (405)
Q Consensus       351 ~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~-~~A~~~~~~~~~~~~-gKvvl  401 (405)
                        .+.++++++++++|++++  .++++|+++|+ ++||+.+.  +++.. ||+||
T Consensus       300 --~~~~~~~~~~~~~g~l~~~~~i~~~~~l~e~~~~a~~~~~--~~~~~~~k~v~  350 (351)
T cd08233         300 --REDFEEVIDLLASGKIDAEPLITSRIPLEDIVEKGFEELI--NDKEQHVKILV  350 (351)
T ss_pred             --cchHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHH--hCCCCceEEEe
Confidence              345788999999999964  46789999996 79999998  77774 99987

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=100.00  E-value=9.3e-44  Score=349.27  Aligned_cols=312  Identities=16%  Similarity=0.159  Sum_probs=248.7

Q ss_pred             cceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhh-cccCC-C----CCCCCCCCccceEEEEEE
Q psy2960          71 YLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTI-QGVYP-I----KPTLPAVPGFEGVGEVVE  144 (405)
Q Consensus        71 ~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~-~g~~~-~----~~~~p~~lG~E~~G~V~~  144 (405)
                      |+||++++.+++.    +++++.|.|+|+++||+|||.++|||++|++.+ .|... .    ...+|.++|||++|+|++
T Consensus         1 m~~~a~~~~~~~~----l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~   76 (410)
T cd08238           1 MKTKAWRMYGKGD----LRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILK   76 (410)
T ss_pred             CCcEEEEEEcCCc----eEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEE
Confidence            5699999998875    899999999999999999999999999999976 45421 1    124688999999999999


Q ss_pred             EcCCCC-CCCCCCEEEecCC---------------CCCcccceEeeccc----ceEEcCCCCChhhhccCCCc--HHHHH
Q psy2960         145 VGSDVS-SLAVGDHVIPDTQ---------------HLGTWRNYGKFNHD----VLMKVPKDIALTEISGITSN--PCTAY  202 (405)
Q Consensus       145 vG~~v~-~~~~GdrV~~~~~---------------~~G~~a~~~~v~~~----~~~~iP~~~s~~~Aa~~~~~--~~ta~  202 (405)
                      +|++|+ +|++||||++.+.               .+|+|+||+.++.+    .++++|+++++++|+.+...  ..+++
T Consensus        77 vG~~v~~~~~vGdrV~~~~~~~c~~~~~c~~~g~~~~G~~aey~~v~~~~~~~~~~~lP~~l~~~~aal~epl~~~~~~~  156 (410)
T cd08238          77 VGKKWQGKYKPGQRFVIQPALILPDGPSCPGYSYTYPGGLATYHIIPNEVMEQDCLLIYEGDGYAEASLVEPLSCVIGAY  156 (410)
T ss_pred             eCCCccCCCCCCCEEEEcCCcCCCCCCCCCCccccCCCcceEEEEecHHhccCCeEECCCCCCHHHHhhcchHHHHHHHh
Confidence            999998 6999999987521               25999999999987    68999999999999876321  12244


Q ss_pred             HHH--------HhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC---cEEEEecCCcchHHHHHHHHHc--------CC
Q psy2960         203 RML--------KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL---KTINIVRNRDDIDKLKSYLKSL--------GA  263 (405)
Q Consensus       203 ~al--------~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~---~v~~~~~~~~~~~~~~~~~~~l--------g~  263 (405)
                      .++        ...+++++|++|+|+|++|++|++++|+|+++|+   +++++.++    +++++.++++        |+
T Consensus       157 ~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~----~~r~~~a~~~~~~~~~~~Ga  232 (410)
T cd08238         157 TANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVN----DERLARAQRLFPPEAASRGI  232 (410)
T ss_pred             hhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCC----HHHHHHHHHhccccccccCc
Confidence            332        2457889999999999889999999999999864   57766543    4457788887        77


Q ss_pred             c-EEeChh---hHHH-HhhhcCCCCCcEEEECCCc-hhHHHHHHhcccCCEEEEEeccCCC--CcccCcccccccCeEEE
Q psy2960         264 D-YVFTEE---ELRN-ISRDASIPKPKLALNCVGG-NSATNLLRTLVSKGVMVTYGGMSRE--PVQIPTSAFIFKDITLR  335 (405)
Q Consensus       264 ~-~v~~~~---d~~~-i~~~t~g~g~Dvvld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~--~~~~~~~~~~~k~~~~~  335 (405)
                      + .+++++   ++.+ +++.|++.++|++||++|. ..+..++++++++|+++.++.....  ..+++...++.+++++.
T Consensus       233 ~~~~i~~~~~~~~~~~v~~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g~~~~~~~~~~~~~~~~~~~~~i~  312 (410)
T cd08238         233 ELLYVNPATIDDLHATLMELTGGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAGPVDKNFSAPLNFYNVHYNNTHYV  312 (410)
T ss_pred             eEEEECCCccccHHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEccCCCCccccccHHHhhhcCcEEE
Confidence            6 567753   4555 8888888899999999986 5556789999999998887643211  23456667778999999


Q ss_pred             EEecchhhhhhccHHHHHHHHHHHHHHHHcCcccC--CcceeeehhhHHHHHHHHhhhcCCCCceEEEEec
Q psy2960         336 GHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       336 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                      |++...           .+.++++++++++|++++  .++++|+|+++++||+.+.   ++..||+||.++
T Consensus       313 g~~~~~-----------~~~~~~~~~li~~g~i~~~~~it~~~~l~~~~~A~~~~~---~~~~gKvvl~~~  369 (410)
T cd08238         313 GTSGGN-----------TDDMKEAIDLMAAGKLNPARMVTHIGGLNAAAETTLNLP---GIPGGKKLIYTQ  369 (410)
T ss_pred             EeCCCC-----------HHHHHHHHHHHHcCCCchhhcEEEEecHHHHHHHHHHhh---ccCCceEEEECC
Confidence            987532           245788999999999997  4789999999999999987   356799999874

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08230 glucose_DH Glucose dehydrogenase

Probab=100.00  E-value=1.2e-43  Score=342.53  Aligned_cols=306  Identities=22%  Similarity=0.273  Sum_probs=236.7

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCC--CCCCCCCccceEEEEEEEcCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIK--PTLPAVPGFEGVGEVVEVGSDVS  150 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~--~~~p~~lG~E~~G~V~~vG~~v~  150 (405)
                      ||+++++..+.  + +++++.|.|+|+++||||||.|+|||++|++.+.|.++..  ..+|.++|||++|+|+++|++ +
T Consensus         1 mka~~~~~~~~--~-l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~   76 (355)
T cd08230           1 MKAIAVKPGKP--G-VRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-S   76 (355)
T ss_pred             CceeEecCCCC--C-CeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-C
Confidence            68899986443  2 8899999999999999999999999999999999875432  235789999999999999999 9


Q ss_pred             CCCCCCEEEecCC-----------------------------CCCcccceEeecccceEEcCCCCChhhhccCCCcHHHH
Q psy2960         151 SLAVGDHVIPDTQ-----------------------------HLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTA  201 (405)
Q Consensus       151 ~~~~GdrV~~~~~-----------------------------~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta  201 (405)
                      .|++||||+..+.                             .+|+|+||++++++.++++|++++ + ++++..++.++
T Consensus        77 ~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~g~~~~~G~~aey~~~~~~~~~~~P~~~~-~-~a~~~~p~~~~  154 (355)
T cd08230          77 GLSPGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYTERGIKGLHGFMREYFVDDPEYLVKVPPSLA-D-VGVLLEPLSVV  154 (355)
T ss_pred             CCCCCCEEEeccccCCCcChhhhCcCcccCCCcceeccCcCCCCccceeEEEeccccEEECCCCCC-c-ceeecchHHHH
Confidence            9999999986421                             248899999999999999999999 4 44444566655


Q ss_pred             HHHHHh------hcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHH
Q psy2960         202 YRMLKD------YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNI  275 (405)
Q Consensus       202 ~~al~~------~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i  275 (405)
                      +.++..      ..++++|++|||+|+ |++|++++|+|+++|++++++.++. ..+++++.++++|++.+ ++.+.. +
T Consensus       155 ~~a~~~~~~~~~~~~~~~g~~vlI~G~-G~vG~~a~q~ak~~G~~vi~~~~~~-~~~~~~~~~~~~Ga~~v-~~~~~~-~  230 (355)
T cd08230         155 EKAIEQAEAVQKRLPTWNPRRALVLGA-GPIGLLAALLLRLRGFEVYVLNRRD-PPDPKADIVEELGATYV-NSSKTP-V  230 (355)
T ss_pred             HHHHHHHhhhhhhcccCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEecCC-CCHHHHHHHHHcCCEEe-cCCccc-h
Confidence            554432      123679999999997 9999999999999999988887542 13556889999999975 543311 1


Q ss_pred             hhhcCCCCCcEEEECCCch-hHHHHHHhcccCCEEEEEeccCC-CCcccC----cccccccCeEEEEEecchhhhhhccH
Q psy2960         276 SRDASIPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSR-EPVQIP----TSAFIFKDITLRGHWMTRWQKENKES  349 (405)
Q Consensus       276 ~~~t~g~g~Dvvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~----~~~~~~k~~~~~g~~~~~~~~~~~~~  349 (405)
                      .+.....++|+||||+|++ .+..++++++++|+++.+|.... ...+++    ...++.|++++.|++...        
T Consensus       231 ~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~--------  302 (355)
T cd08230         231 AEVKLVGEFDLIIEATGVPPLAFEALPALAPNGVVILFGVPGGGREFEVDGGELNRDLVLGNKALVGSVNAN--------  302 (355)
T ss_pred             hhhhhcCCCCEEEECcCCHHHHHHHHHHccCCcEEEEEecCCCCCccccChhhhhhhHhhcCcEEEEecCCc--------
Confidence            1111245899999999975 45778999999999999996544 233344    245677999999986543        


Q ss_pred             HHHHHHHHHHHHHHHcCc------ccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         350 AERKSMMNELTEMMRTGK------LAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       350 ~~~~~~~~~~~~~~~~g~------l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                         .+.++++++++.++.      +++.++++|+++|+++||+.+.  ++.  +|+||++
T Consensus       303 ---~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~--~~~--~K~v~~~  355 (355)
T cd08230         303 ---KRHFEQAVEDLAQWKYRWPGVLERLITRRVPLEEFAEALTEKP--DGE--IKVVIEW  355 (355)
T ss_pred             ---hhhHHHHHHHHHhcccccccchHHheeeeecHHHHHHHHHhcc--cCC--eEEEeeC
Confidence               123566677777665      5666889999999999999887  543  5999975

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=100.00  E-value=1.5e-43  Score=339.77  Aligned_cols=297  Identities=17%  Similarity=0.211  Sum_probs=232.8

Q ss_pred             ceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCC---CCCCCCCCccceEEEEEEEcCC
Q psy2960          72 LANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPI---KPTLPAVPGFEGVGEVVEVGSD  148 (405)
Q Consensus        72 ~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~---~~~~p~~lG~E~~G~V~~vG~~  148 (405)
                      ..|+++++++++    +++++.|.|+ +++||||||.++|||++|++.+.|.++.   ...+|.++|||++|+|+++|.+
T Consensus         2 ~~~~~~~~~~~~----~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~   76 (341)
T cd08237           2 INQVYRLVRPKF----FEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG   76 (341)
T ss_pred             cccceEEeccce----EEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC
Confidence            467888988876    8999999995 9999999999999999999999987532   1357999999999999998764


Q ss_pred             CCCCCCCCEEEecCC-----------------------CCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHH
Q psy2960         149 VSSLAVGDHVIPDTQ-----------------------HLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRML  205 (405)
Q Consensus       149 v~~~~~GdrV~~~~~-----------------------~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al  205 (405)
                        .|++||||+..+.                       .+|+|+||+++++++++++|+++++++||.+. +++++|+++
T Consensus        77 --~~~vGdrV~~~~~~~~~~~~~~~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~vP~~l~~~~aa~~~-~~~~a~~a~  153 (341)
T cd08237          77 --TYKVGTKVVMVPNTPVEKDEIIPENYLPSSRFRSSGYDGFMQDYVFLPPDRLVKLPDNVDPEVAAFTE-LVSVGVHAI  153 (341)
T ss_pred             --ccCCCCEEEECCCCCchhcccchhccCCCcceeEecCCCceEEEEEEchHHeEECCCCCChHHhhhhc-hHHHHHHHH
Confidence              7999999987531                       24889999999999999999999999887554 888899998


Q ss_pred             Hhh--cCCCCCCEEEEeCCCcHHHHHHHHHHHH-cCC-cEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCC
Q psy2960         206 KDY--NSLSPGDVVIQNGANSACGQNVIQIARH-WGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASI  281 (405)
Q Consensus       206 ~~~--~~~~~g~~VLI~ga~G~vG~~aiqla~~-~G~-~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g  281 (405)
                      ...  +.+++|++|||.|+ |++|++++|+|+. +|+ +++++..+    +++++.++..+++..++  ++      +..
T Consensus       154 ~~~~~~~~~~g~~VlV~G~-G~vGl~~~~~a~~~~g~~~vi~~~~~----~~k~~~a~~~~~~~~~~--~~------~~~  220 (341)
T cd08237         154 SRFEQIAHKDRNVIGVWGD-GNLGYITALLLKQIYPESKLVVFGKH----QEKLDLFSFADETYLID--DI------PED  220 (341)
T ss_pred             HHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHhcCCCcEEEEeCc----HhHHHHHhhcCceeehh--hh------hhc
Confidence            642  45789999999997 9999999999986 564 66666543    34567777766654332  11      113


Q ss_pred             CCCcEEEECCCch----hHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHH
Q psy2960         282 PKPKLALNCVGGN----SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMN  357 (405)
Q Consensus       282 ~g~Dvvld~~g~~----~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~  357 (405)
                      .++|+||||+|+.    .+..++++++++|+++.+|... .+..++...++.|++++.|++...           .+.++
T Consensus       221 ~g~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G~~~-~~~~~~~~~~~~k~~~i~g~~~~~-----------~~~~~  288 (341)
T cd08237         221 LAVDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMGVSE-YPVPINTRMVLEKGLTLVGSSRST-----------REDFE  288 (341)
T ss_pred             cCCcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEeecC-CCcccCHHHHhhCceEEEEecccC-----------HHHHH
Confidence            3699999999953    4567899999999999999532 334556666778999999986432           23477


Q ss_pred             HHHHHHHcC-----cccCCcceeeehh---hHHHHHHHHhhhcCCCCceEEEEec
Q psy2960         358 ELTEMMRTG-----KLAAPAHKFVTLK---NFQEALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       358 ~~~~~~~~g-----~l~~~~~~~~~~~---~~~~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                      ++++++++|     .+++.++++|+++   ++.+||+.+.  ++ ..||+||+++
T Consensus       289 ~~~~~~~~~~~~~~~l~~~i~~~~~l~~l~~~~~a~~~~~--~~-~~gKvvi~~~  340 (341)
T cd08237         289 RAVELLSRNPEVAEYLRKLVGGVFPVRSINDIHRAFESDL--TN-SWGKTVMEWE  340 (341)
T ss_pred             HHHHHHHhCCcccCChHHHhccccccccHHHHHHHHHHHh--hc-CcceEEEEee
Confidence            888999998     5667788999985   5666666555  33 6899999875

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=100.00  E-value=3.6e-43  Score=335.36  Aligned_cols=294  Identities=22%  Similarity=0.316  Sum_probs=242.8

Q ss_pred             cceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCCCCCCEEEecCCCC
Q psy2960          86 RVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHL  165 (405)
Q Consensus        86 ~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~~GdrV~~~~~~~  165 (405)
                      +.+++.+.|.|+|++|||||||.|+|||+.|..   |.++.. ..|.++|.|++|+|+++|+   +|++||||+++    
T Consensus        17 ~~l~~~~~~~p~~~~~evlv~v~a~~~n~~~~~---g~~~~~-~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~----   85 (325)
T TIGR02825        17 SDFELKTVELPPLNNGEVLLEALFLSVDPYMRV---AAKRLK-EGDTMMGQQVARVVESKNV---ALPKGTIVLAS----   85 (325)
T ss_pred             CceEEEeccCCCCCCCcEEEEEEEEecCHHHhc---ccCcCC-CCCcEecceEEEEEEeCCC---CCCCCCEEEEe----
Confidence            568899999999999999999999999997653   433322 3478999999999999774   69999999986    


Q ss_pred             CcccceEeecccceEEc----CCCCChhhh-ccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc
Q psy2960         166 GTWRNYGKFNHDVLMKV----PKDIALTEI-SGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK  240 (405)
Q Consensus       166 G~~a~~~~v~~~~~~~i----P~~~s~~~A-a~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~  240 (405)
                      ++|++|+.++.+.++++    |+++++++| ++++++++|||+++...+++++|++|||+|++|++|++++|+|+..|++
T Consensus        86 ~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~  165 (325)
T TIGR02825        86 PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCK  165 (325)
T ss_pred             cCceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCE
Confidence            47999999999988887    999999997 7899999999999988899999999999999999999999999999999


Q ss_pred             EEEEecCCcchHHHHHHHHHcCCcEEeChhh---HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEeccC
Q psy2960         241 TINIVRNRDDIDKLKSYLKSLGADYVFTEEE---LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMS  316 (405)
Q Consensus       241 v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d---~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~~  316 (405)
                      +++++++.    ++.+.++++|+++++++++   +.+ +...+ ++++|++|||+|++....++++++++|+++.+|...
T Consensus       166 Vi~~~~s~----~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~-~~gvdvv~d~~G~~~~~~~~~~l~~~G~iv~~G~~~  240 (325)
T TIGR02825       166 VVGAAGSD----EKVAYLKKLGFDVAFNYKTVKSLEETLKKAS-PDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAIS  240 (325)
T ss_pred             EEEEeCCH----HHHHHHHHcCCCEEEeccccccHHHHHHHhC-CCCeEEEEECCCHHHHHHHHHHhCcCcEEEEecchh
Confidence            99888654    3478888999999998753   344 44444 568999999999988888999999999999998543


Q ss_pred             CC----Ccc--cCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHHhh
Q psy2960         317 RE----PVQ--IPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMS  390 (405)
Q Consensus       317 ~~----~~~--~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~  390 (405)
                      ..    ...  .....+..+++++.++....+..     +...+.++++++++++|++++.+..+|+++++++||+.+. 
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~-  314 (325)
T TIGR02825       241 TYNRTGPLPPGPPPEIVIYQELRMEGFIVNRWQG-----EVRQKALKELLKWVLEGKIQYKEYVIEGFENMPAAFMGML-  314 (325)
T ss_pred             hcccCCCCCCCcchHHHhhhcceEeEEEehhhhh-----hhhHHHHHHHHHHHHCCCcccceeccccHHHHHHHHHHHh-
Confidence            21    111  11233456788888876543211     2335678899999999999988778899999999999999 


Q ss_pred             hcCCCCceEEEE
Q psy2960         391 IQGKSGVKYYID  402 (405)
Q Consensus       391 ~~~~~~gKvvl~  402 (405)
                       +++..||+|++
T Consensus       315 -~~~~~gkvVv~  325 (325)
T TIGR02825       315 -KGENLGKTIVK  325 (325)
T ss_pred             -cCCCCCeEEeC
Confidence             88999999974

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=100.00  E-value=1.2e-42  Score=340.19  Aligned_cols=317  Identities=20%  Similarity=0.296  Sum_probs=265.1

Q ss_pred             CcccceeEEEEc--cCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCC----------CCCCCCCc
Q psy2960          68 GFSYLANKLVYN--QHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIK----------PTLPAVPG  135 (405)
Q Consensus        68 ~~~~~~~a~~~~--~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~----------~~~p~~lG  135 (405)
                      .+|.+||++++.  ++|.+...+++++.|.|.++++||+|||.++|||++|++...|. +..          ...+.++|
T Consensus         8 ~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~-~~~~~~~~~~~~~~~~~~~~G   86 (393)
T cd08246           8 VVPEKMYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGE-PVSTFAARQRRGRDEPYHIGG   86 (393)
T ss_pred             cCchhhhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCC-CccccccccccCCCCCccccc
Confidence            378999999986  34555445889999999999999999999999999999988774 110          01235899


Q ss_pred             cceEEEEEEEcCCCCCCCCCCEEEecCC---------------------------CCCcccceEeecccceEEcCCCCCh
Q psy2960         136 FEGVGEVVEVGSDVSSLAVGDHVIPDTQ---------------------------HLGTWRNYGKFNHDVLMKVPKDIAL  188 (405)
Q Consensus       136 ~E~~G~V~~vG~~v~~~~~GdrV~~~~~---------------------------~~G~~a~~~~v~~~~~~~iP~~~s~  188 (405)
                      ||++|+|+++|++++.+++||+|++.+.                           ..|+|++|+.++...++++|+++++
T Consensus        87 ~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~g~~a~y~~v~~~~l~~iP~~l~~  166 (393)
T cd08246          87 SDASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRIWGYETNYGSFAQFALVQATQLMPKPKHLSW  166 (393)
T ss_pred             cceEEEEEEeCCCCCcCCCCCEEEEeccccccCcccccccccccccccccccccCCCCcceeEEEechHHeEECCCCCCH
Confidence            9999999999999999999999998641                           2489999999999999999999999


Q ss_pred             hhhccCCCcHHHHHHHHHhh--cCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE
Q psy2960         189 TEISGITSNPCTAYRMLKDY--NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV  266 (405)
Q Consensus       189 ~~Aa~~~~~~~ta~~al~~~--~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v  266 (405)
                      ++++.+++++.|||+++...  +++++|++|+|+|++|++|++++++|+++|++++++++++    ++++.++++|++++
T Consensus       167 ~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~----~~~~~~~~~G~~~~  242 (393)
T cd08246         167 EEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSE----EKAEYCRALGAEGV  242 (393)
T ss_pred             HHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCH----HHHHHHHHcCCCEE
Confidence            99999999999999998754  6889999999999999999999999999999998887543    45778889999998


Q ss_pred             eChhh------------------------HHH-HhhhcCCC-CCcEEEECCCchhHHHHHHhcccCCEEEEEeccCCCCc
Q psy2960         267 FTEEE------------------------LRN-ISRDASIP-KPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV  320 (405)
Q Consensus       267 ~~~~d------------------------~~~-i~~~t~g~-g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~  320 (405)
                      ++.++                        +.+ +.+++++. ++|++|||+|+.....++++++++|+++.+|.......
T Consensus       243 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~  322 (393)
T cd08246         243 INRRDFDHWGVLPDVNSEAYTAWTKEARRFGKAIWDILGGREDPDIVFEHPGRATFPTSVFVCDRGGMVVICAGTTGYNH  322 (393)
T ss_pred             EcccccccccccccccchhhhhhhhccchHHHHHHHHhCCCCCCeEEEECCchHhHHHHHHHhccCCEEEEEcccCCCCC
Confidence            87521                        334 77788877 89999999998877889999999999999986543333


Q ss_pred             ccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHHhhhcC-CCCceE
Q psy2960         321 QIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQG-KSGVKY  399 (405)
Q Consensus       321 ~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~-~~~gKv  399 (405)
                      .++...++.++.++.+.+...           .+.+.+++++++++.+.+.++++|+++++++||+.+.  ++ +..||+
T Consensus       323 ~~~~~~l~~~~~~i~g~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~a~~~~~--~~~~~~gkv  389 (393)
T cd08246         323 TYDNRYLWMRQKRIQGSHFAN-----------DREAAEANRLVMKGRIDPCLSKVFSLDETPDAHQLMH--RNQHHVGNM  389 (393)
T ss_pred             CCcHHHHhhheeEEEecccCc-----------HHHHHHHHHHHHcCCceeeeeEEEeHHHHHHHHHHHH--hCccccceE
Confidence            445555667888888876543           2346778899999999877889999999999999999  88 788999


Q ss_pred             EEE
Q psy2960         400 YID  402 (405)
Q Consensus       400 vl~  402 (405)
                      |+-
T Consensus       390 vv~  392 (393)
T cd08246         390 AVL  392 (393)
T ss_pred             EEe
Confidence            874

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=100.00  E-value=1.1e-42  Score=336.88  Aligned_cols=308  Identities=22%  Similarity=0.310  Sum_probs=253.2

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCC-
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSS-  151 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~-  151 (405)
                      .|++++.++++.   +++++.|.|.|+++||+|||.++++|++|++...|.++. ..+|.++|||++|+|+++|+++++ 
T Consensus         1 ~ka~~~~~~~~~---l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~   76 (361)
T cd08231           1 ARAAVLTGPGKP---LEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPR-VPLPIILGHEGVGRVVALGGGVTTD   76 (361)
T ss_pred             CeEEEEcCCCCC---CEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCC-CCCCcccccCCceEEEEeCCCcccc
Confidence            378999998854   899999999999999999999999999999999987653 357899999999999999999986 


Q ss_pred             -----CCCCCEEEecCC---------------------------------CCCcccceEeeccc-ceEEcCCCCChhhhc
Q psy2960         152 -----LAVGDHVIPDTQ---------------------------------HLGTWRNYGKFNHD-VLMKVPKDIALTEIS  192 (405)
Q Consensus       152 -----~~~GdrV~~~~~---------------------------------~~G~~a~~~~v~~~-~~~~iP~~~s~~~Aa  192 (405)
                           |++||+|++.+.                                 ..|+|++|+.++++ .++++|+++++++|+
T Consensus        77 ~~~~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~~lP~~~~~~~aa  156 (361)
T cd08231          77 VAGEPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLSGGYAEHIYLPPGTAIVRVPDNVPDEVAA  156 (361)
T ss_pred             ccCCccCCCCEEEEcccCCCCCChhHhCcCccccccchhccccccccCCCCCcccceEEEecCCCceEECCCCCCHHHHH
Confidence                 999999987621                                 25899999999996 799999999999999


Q ss_pred             cCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHcCCcEEeChhh
Q psy2960         193 GITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEEE  271 (405)
Q Consensus       193 ~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d  271 (405)
                      +++++++|||+++......++|++|||+|+ |++|++++|+|+.+|+ +++++++++    ++.+.++++|++.++++++
T Consensus       157 ~~~~~~~ta~~al~~~~~~~~g~~vlI~g~-g~vG~~~~~lak~~G~~~v~~~~~~~----~~~~~~~~~g~~~vi~~~~  231 (361)
T cd08231         157 PANCALATVLAALDRAGPVGAGDTVVVQGA-GPLGLYAVAAAKLAGARRVIVIDGSP----ERLELAREFGADATIDIDE  231 (361)
T ss_pred             HhcCHHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCH----HHHHHHHHcCCCeEEcCcc
Confidence            999999999999988777779999999985 9999999999999999 777776443    3467788999999987643


Q ss_pred             -----HHH-HhhhcCCCCCcEEEECCCc-hhHHHHHHhcccCCEEEEEeccCC-CCcccCcccccccCeEEEEEecchhh
Q psy2960         272 -----LRN-ISRDASIPKPKLALNCVGG-NSATNLLRTLVSKGVMVTYGGMSR-EPVQIPTSAFIFKDITLRGHWMTRWQ  343 (405)
Q Consensus       272 -----~~~-i~~~t~g~g~Dvvld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~k~~~~~g~~~~~~~  343 (405)
                           +.. +.+.+++.++|++|||+|+ .....++++++++|+++.+|.... ....++...++.+++++.+++..+  
T Consensus       232 ~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  309 (361)
T cd08231         232 LPDPQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELLRRGGTYVLVGSVAPAGTVPLDPERIVRKNLTIIGVHNYD--  309 (361)
T ss_pred             cccHHHHHHHHHHhCCCCCcEEEECCCChHHHHHHHHHhccCCEEEEEcCCCCCCccccCHHHHhhcccEEEEcccCC--
Confidence                 123 7788888899999999987 456678999999999999996542 123344334577899999987543  


Q ss_pred             hhhccHHHHHHHHHHHHHHHHcC----cccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         344 KENKESAERKSMMNELTEMMRTG----KLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~g----~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                               .+.++++++++.++    .+.+.++++|+++++++||+.+.  ++. .+|+||++
T Consensus       310 ---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~--~~~-~~k~vi~~  361 (361)
T cd08231         310 ---------PSHLYRAVRFLERTQDRFPFAELVTHRYPLEDINEALELAE--SGT-ALKVVIDP  361 (361)
T ss_pred             ---------chhHHHHHHHHHhccCcCCchhheeeeeeHHHHHHHHHHHH--cCC-ceEEEeCC
Confidence                     12245566666665    34455788999999999999988  666 48999864

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=100.00  E-value=1.1e-41  Score=326.06  Aligned_cols=324  Identities=22%  Similarity=0.312  Sum_probs=272.1

Q ss_pred             ceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCC
Q psy2960          72 LANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSS  151 (405)
Q Consensus        72 ~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~  151 (405)
                      ||||+++.+++.+ ..+.+.+.+.|++.++||+|||.++|+|+.|+....|.++.....|.++|||++|+|+++|+++++
T Consensus         1 ~m~a~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~   79 (334)
T PTZ00354          1 MMRAVTLKGFGGV-DVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKR   79 (334)
T ss_pred             CcEEEEEEecCCC-cceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCC
Confidence            6999999988865 347788888888999999999999999999999998876543455779999999999999999999


Q ss_pred             CCCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHH
Q psy2960         152 LAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVI  231 (405)
Q Consensus       152 ~~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~ai  231 (405)
                      +++||+|+++. .+|+|++|+.++.+.++++|+++++++++.+++++.|||+++...+.+++|++|||+|++|++|++++
T Consensus        80 ~~~Gd~V~~~~-~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~  158 (334)
T PTZ00354         80 FKEGDRVMALL-PGGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAA  158 (334)
T ss_pred             CCCCCEEEEec-CCCceeeEEEecHHHcEeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHH
Confidence            99999999883 35899999999999999999999999999999999999999988889999999999999999999999


Q ss_pred             HHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh---HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCC
Q psy2960         232 QIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE---LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKG  307 (405)
Q Consensus       232 qla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d---~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G  307 (405)
                      ++|+.+|+++++++++.    ++.+.++++|++++++..+   +.. +.+.+++.++|++|||+|++....++++++++|
T Consensus       159 ~~a~~~g~~v~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~l~~~g  234 (334)
T PTZ00354        159 QLAEKYGAATIITTSSE----EKVDFCKKLAAIILIRYPDEEGFAPKVKKLTGEKGVNLVLDCVGGSYLSETAEVLAVDG  234 (334)
T ss_pred             HHHHHcCCEEEEEeCCH----HHHHHHHHcCCcEEEecCChhHHHHHHHHHhCCCCceEEEECCchHHHHHHHHHhccCC
Confidence            99999999988876553    3467778899998887642   445 777887889999999999888888999999999


Q ss_pred             EEEEEeccCCCCcc-cCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHHH
Q psy2960         308 VMVTYGGMSREPVQ-IPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALM  386 (405)
Q Consensus       308 ~~v~~g~~~~~~~~-~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~  386 (405)
                      +++.+|........ ++...++.++.++.++......... .+....+.+++++++++++.+.+.+.+.|++++++++|+
T Consensus       235 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  313 (334)
T PTZ00354        235 KWIVYGFMGGAKVEKFNLLPLLRKRASIIFSTLRSRSDEY-KADLVASFEREVLPYMEEGEIKPIVDRTYPLEEVAEAHT  313 (334)
T ss_pred             eEEEEecCCCCcccccCHHHHHhhCCEEEeeeccccchhh-hHHHHHHHHHHHHHHHHCCCccCccccEEcHHHHHHHHH
Confidence            99999854333322 4445556677788887654422111 123445667888999999999987889999999999999


Q ss_pred             HHhhhcCCCCceEEEEec
Q psy2960         387 NTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       387 ~~~~~~~~~~gKvvl~~~  404 (405)
                      .+.  +++..+|+|++++
T Consensus       314 ~~~--~~~~~~kvvv~~~  329 (334)
T PTZ00354        314 FLE--QNKNIGKVVLTVN  329 (334)
T ss_pred             HHH--hCCCCceEEEecC
Confidence            998  7788899999875

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=100.00  E-value=1.5e-41  Score=323.94  Aligned_cols=316  Identities=20%  Similarity=0.311  Sum_probs=260.7

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||++++++++++ +.+++++.|.|.++++||+||+.++|+|++|++...|.++....+|.++|||++|+|+++  +++.+
T Consensus         1 ~~a~~~~~~~~~-~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~   77 (325)
T cd05280           1 FKALVVEEQDGG-VSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRF   77 (325)
T ss_pred             CceEEEcccCCC-CcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCC
Confidence            799999998864 348999999999999999999999999999999999876544456889999999999998  56789


Q ss_pred             CCCCEEEecC-----CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcC--CCC-CCEEEEeCCCc
Q psy2960         153 AVGDHVIPDT-----QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNS--LSP-GDVVIQNGANS  224 (405)
Q Consensus       153 ~~GdrV~~~~-----~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~--~~~-g~~VLI~ga~G  224 (405)
                      ++||+|++..     ...|+|++|+.++.+.++++|+++++++|+.+++++.|||+++.....  +++ +++|+|+|++|
T Consensus        78 ~~Gd~V~~~~~~~g~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g  157 (325)
T cd05280          78 REGDEVLVTGYDLGMNTDGGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATG  157 (325)
T ss_pred             CCCCEEEEcccccCCCCCceeEEEEEEchhhEEECCCCCCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCcc
Confidence            9999999862     135899999999999999999999999999999999999999866443  353 57999999999


Q ss_pred             HHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH-HhhhcCCCCCcEEEECCCchhHHHHHHhc
Q psy2960         225 ACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCVGGNSATNLLRTL  303 (405)
Q Consensus       225 ~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l  303 (405)
                      ++|++++|+|+.+|+++++++++.    ++++.++++|++++++.++... +.+.+.++++|+||||+|++....+++++
T Consensus       158 ~vg~~~~~~a~~~g~~v~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l  233 (325)
T cd05280         158 GVGSIAVAILAKLGYTVVALTGKE----EQADYLKSLGASEVLDREDLLDESKKPLLKARWAGAIDTVGGDVLANLLKQT  233 (325)
T ss_pred             HHHHHHHHHHHHcCCEEEEEeCCH----HHHHHHHhcCCcEEEcchhHHHHHHHHhcCCCccEEEECCchHHHHHHHHhh
Confidence            999999999999999998887654    3467778999999998765433 44444456799999999998888899999


Q ss_pred             ccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHH
Q psy2960         304 VSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQE  383 (405)
Q Consensus       304 ~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~  383 (405)
                      +++|+++.+|.....+..++...++.+++++.++......     ++...+.++.+.+++..+. .+.+..+|+++++++
T Consensus       234 ~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  307 (325)
T cd05280         234 KYGGVVASCGNAAGPELTTTVLPFILRGVSLLGIDSVNCP-----MELRKQVWQKLATEWKPDL-LEIVVREISLEELPE  307 (325)
T ss_pred             cCCCEEEEEecCCCCccccccchheeeeeEEEEEEeecCc-----hhHHHHHHHHHHHHHhcCC-ccceeeEecHHHHHH
Confidence            9999999999654333344445555799999998765321     1233456777777777774 444788999999999


Q ss_pred             HHHHHhhhcCCCCceEEEEe
Q psy2960         384 ALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       384 A~~~~~~~~~~~~gKvvl~~  403 (405)
                      ||+.+.  ++++.||+|+++
T Consensus       308 a~~~~~--~~~~~gk~vv~~  325 (325)
T cd05280         308 AIDRLL--AGKHRGRTVVKI  325 (325)
T ss_pred             HHHHHh--cCCcceEEEEeC
Confidence            999999  889999999874

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=100.00  E-value=2.1e-41  Score=322.68  Aligned_cols=318  Identities=22%  Similarity=0.259  Sum_probs=267.8

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCC--CCCCCCCCccceEEEEEEEcCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPI--KPTLPAVPGFEGVGEVVEVGSDVS  150 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~p~~lG~E~~G~V~~vG~~v~  150 (405)
                      ||++++++++.+ ..+.+.+.+.|.+.++||+|++.++++|++|++...|..+.  ....|.++|||++|+|+++|++++
T Consensus         1 ~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~   79 (324)
T cd08244           1 MRAIRLHEFGPP-EVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVD   79 (324)
T ss_pred             CeEEEEcCCCCc-cceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCC
Confidence            789999887764 44777888888889999999999999999999998886532  235678999999999999999999


Q ss_pred             CCCCCCEEEecC-CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHH
Q psy2960         151 SLAVGDHVIPDT-QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQN  229 (405)
Q Consensus       151 ~~~~GdrV~~~~-~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~  229 (405)
                      .+++||+|++.. ...|+|++|+.++...++++|++++++++++++++++||| ++...+.+++|++|+|+|++|++|++
T Consensus        80 ~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~a~~~~~~~~ta~-~~~~~~~~~~~~~vlI~g~~~~~g~~  158 (324)
T cd08244          80 PAWLGRRVVAHTGRAGGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTAL-GLLDLATLTPGDVVLVTAAAGGLGSL  158 (324)
T ss_pred             CCCCCCEEEEccCCCCceeeEEEEEchHHeEeCCCCCCHHHHhhhcchHHHHH-HHHHhcCCCCCCEEEEEcCCchHHHH
Confidence            999999999873 1258999999999999999999999999999999999995 55566899999999999999999999


Q ss_pred             HHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccC
Q psy2960         230 VIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSK  306 (405)
Q Consensus       230 aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~  306 (405)
                      ++++|+.+|+++++++++++    +.+.++++|++.++++.+  +.+ +.+.++++++|+++||+|+.....++++++++
T Consensus       159 ~~~la~~~g~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~l~~~  234 (324)
T cd08244         159 LVQLAKAAGATVVGAAGGPA----KTALVRALGADVAVDYTRPDWPDQVREALGGGGVTVVLDGVGGAIGRAALALLAPG  234 (324)
T ss_pred             HHHHHHHCCCEEEEEeCCHH----HHHHHHHcCCCEEEecCCccHHHHHHHHcCCCCceEEEECCChHhHHHHHHHhccC
Confidence            99999999999988875543    356778899998887653  444 77777778999999999998888889999999


Q ss_pred             CEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHHH
Q psy2960         307 GVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALM  386 (405)
Q Consensus       307 G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~  386 (405)
                      |+++.+|.....+..++....+.+++++.++....+..     +...+.+++++++++++.+.+.++..|+++++++||+
T Consensus       235 g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~a~~  309 (324)
T cd08244         235 GRFLTYGWASGEWTALDEDDARRRGVTVVGLLGVQAER-----GGLRALEARALAEAAAGRLVPVVGQTFPLERAAEAHA  309 (324)
T ss_pred             cEEEEEecCCCCCCccCHHHHhhCCcEEEEeecccCCH-----HHHHHHHHHHHHHHHCCCccCccceEEeHHHHHHHHH
Confidence            99999996544333444445567899999887654321     3446778889999999999887889999999999999


Q ss_pred             HHhhhcCCCCceEEEEe
Q psy2960         387 NTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       387 ~~~~~~~~~~gKvvl~~  403 (405)
                      .+.  +++..||+|+++
T Consensus       310 ~~~--~~~~~~kvv~~~  324 (324)
T cd08244         310 ALE--ARSTVGKVLLLP  324 (324)
T ss_pred             HHH--cCCCCceEEEeC
Confidence            999  889999999864

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=100.00  E-value=8.9e-42  Score=334.35  Aligned_cols=319  Identities=20%  Similarity=0.290  Sum_probs=266.3

Q ss_pred             cccceeEEEEcc--CCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCC---------CCCCC-CCCcc
Q psy2960          69 FSYLANKLVYNQ--HGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPI---------KPTLP-AVPGF  136 (405)
Q Consensus        69 ~~~~~~a~~~~~--~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~---------~~~~p-~~lG~  136 (405)
                      +|.+||+|++..  +++|.+.+++.+.|.|.|+++||+||+.++++|++|++...+....         ....| .++||
T Consensus         4 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~   83 (398)
T TIGR01751         4 VPETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGS   83 (398)
T ss_pred             cchhhhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceeccc
Confidence            578899999965  7776667999999999999999999999999999999877664210         00123 37999


Q ss_pred             ceEEEEEEEcCCCCCCCCCCEEEecCC---------------------------CCCcccceEeecccceEEcCCCCChh
Q psy2960         137 EGVGEVVEVGSDVSSLAVGDHVIPDTQ---------------------------HLGTWRNYGKFNHDVLMKVPKDIALT  189 (405)
Q Consensus       137 E~~G~V~~vG~~v~~~~~GdrV~~~~~---------------------------~~G~~a~~~~v~~~~~~~iP~~~s~~  189 (405)
                      |++|+|+++|++++.+++||+|++...                           ..|+|++|+.++...++++|++++++
T Consensus        84 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~ae~~~v~~~~~~~vP~~l~~~  163 (398)
T TIGR01751        84 DASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRIWGYETNFGSFAEFALVKDYQLMPKPKHLTWE  163 (398)
T ss_pred             ceEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCccccccccccccccCCCccceEEEEechHHeEECCCCCCHH
Confidence            999999999999999999999998631                           25899999999999999999999999


Q ss_pred             hhccCCCcHHHHHHHHHh--hcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe
Q psy2960         190 EISGITSNPCTAYRMLKD--YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF  267 (405)
Q Consensus       190 ~Aa~~~~~~~ta~~al~~--~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~  267 (405)
                      +++.+++++.|||+++..  .+++++|++|+|+|++|++|++++|+|+++|++++++++++    ++.+.++++|++.++
T Consensus       164 ~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~----~~~~~~~~~g~~~~v  239 (398)
T TIGR01751       164 EAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSP----EKAEYCRELGAEAVI  239 (398)
T ss_pred             HHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCH----HHHHHHHHcCCCEEe
Confidence            999999999999999865  47889999999999999999999999999999988887543    346788889999998


Q ss_pred             Chhh------------------------HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEeccCCCCccc
Q psy2960         268 TEEE------------------------LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQI  322 (405)
Q Consensus       268 ~~~d------------------------~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~  322 (405)
                      |.++                        +.. +.+.++++++|++|||+|+..+..++++++++|+++.+|........+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~  319 (398)
T TIGR01751       240 DRNDFGHWGRLPDLNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGRATFPTSVFVCRRGGMVVICGGTTGYNHDY  319 (398)
T ss_pred             cCCCcchhhccccccccccchhhhcchhHHHHHHHHcCCCCceEEEECCcHHHHHHHHHhhccCCEEEEEccccCCCCCc
Confidence            7532                        233 667777789999999999877788899999999999999765443444


Q ss_pred             CcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEE
Q psy2960         323 PTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYID  402 (405)
Q Consensus       323 ~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~  402 (405)
                      +...++.++.++.+.....           .+.+++++++++++.+.+.++++|+++++++||+.+.  +++..||+|++
T Consensus       320 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~a~~~~~--~~~~~gkvvv~  386 (398)
T TIGR01751       320 DNRYLWMRQKRIQGSHFAN-----------LREAWEANRLVAKGRIDPTLSKVYPLEEIGQAHQDVH--RNHHQGNVAVL  386 (398)
T ss_pred             CHHHHhhcccEEEccccCc-----------HHHHHHHHHHHHCCCcccceeeEEcHHHHHHHHHHHH--cCCCCceEEEE
Confidence            4555566777777765432           1235778899999999988889999999999999999  88999999998


Q ss_pred             ec
Q psy2960         403 FR  404 (405)
Q Consensus       403 ~~  404 (405)
                      +.
T Consensus       387 ~~  388 (398)
T TIGR01751       387 VL  388 (398)
T ss_pred             eC
Confidence            75

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=1e-41  Score=326.46  Aligned_cols=302  Identities=22%  Similarity=0.318  Sum_probs=255.7

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||++++++++.+   +++++.|.|+++++||+||+.++++|++|++.+.|.++. ..+|.++|||++|+|+++|++++++
T Consensus         1 m~a~~~~~~~~~---~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~v~~vG~~v~~~   76 (333)
T cd08296           1 YKAVQVTEPGGP---LELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPG-LSYPRVPGHEVVGRIDAVGEGVSRW   76 (333)
T ss_pred             CeEEEEccCCCC---ceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCC-CCCCcccCcceeEEEEEECCCCccC
Confidence            799999988544   889999999999999999999999999999999887653 2568899999999999999999999


Q ss_pred             CCCCEEEecC---------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHH
Q psy2960         153 AVGDHVIPDT---------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRML  205 (405)
Q Consensus       153 ~~GdrV~~~~---------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al  205 (405)
                      ++||+|++.+                           ...|+|++|+.++...++++|+++++++++.++++++|||+++
T Consensus        77 ~~Gd~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~~~~~~~g~~a~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~  156 (333)
T cd08296          77 KVGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVTRDGGYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTTFNAL  156 (333)
T ss_pred             CCCCEEEeccccCCCCCChhhhCcCcccCCCCCccCcccCCcceeEEEEchhheEeCCCCCCHHHhhhhhhhhHHHHHHH
Confidence            9999998621                           1258999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCCC
Q psy2960         206 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIP  282 (405)
Q Consensus       206 ~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g~  282 (405)
                      .. .++++|++|||+| +|++|++++|+|+++|+++++++++.    ++++.++++|+++++++..  +.. +++.   .
T Consensus       157 ~~-~~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~~~----~~~~~~~~~g~~~~i~~~~~~~~~~~~~~---~  227 (333)
T cd08296         157 RN-SGAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISRGS----DKADLARKLGAHHYIDTSKEDVAEALQEL---G  227 (333)
T ss_pred             Hh-cCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeCCh----HHHHHHHHcCCcEEecCCCccHHHHHHhc---C
Confidence            76 4999999999999 69999999999999999988887543    3478888999999988653  444 5544   3


Q ss_pred             CCcEEEECCC-chhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHH
Q psy2960         283 KPKLALNCVG-GNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTE  361 (405)
Q Consensus       283 g~Dvvld~~g-~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  361 (405)
                      ++|+++|++| +.....++++++++|+++.+|... ...+++...++.+++++.++....           .+.++.+++
T Consensus       228 ~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~~-----------~~~~~~~~~  295 (333)
T cd08296         228 GAKLILATAPNAKAISALVGGLAPRGKLLILGAAG-EPVAVSPLQLIMGRKSIHGWPSGT-----------ALDSEDTLK  295 (333)
T ss_pred             CCCEEEECCCchHHHHHHHHHcccCCEEEEEecCC-CCCCcCHHHHhhcccEEEEeCcCC-----------HHHHHHHHH
Confidence            7999999987 556677899999999999999654 234455556678999999987432           234667778


Q ss_pred             HHHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEE
Q psy2960         362 MMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYID  402 (405)
Q Consensus       362 ~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~  402 (405)
                      +++++.+++. .++|+++++.+||+.+.  +++..||+||+
T Consensus       296 ~~~~~~l~~~-v~~~~~~~~~~a~~~~~--~~~~~gk~v~~  333 (333)
T cd08296         296 FSALHGVRPM-VETFPLEKANEAYDRMM--SGKARFRVVLT  333 (333)
T ss_pred             HHHhCCCCce-EEEEEHHHHHHHHHHHH--CCCCceeEEeC
Confidence            8889998876 46899999999999999  88889999885

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=9.7e-42  Score=326.88  Aligned_cols=316  Identities=19%  Similarity=0.308  Sum_probs=255.9

Q ss_pred             eEEEEccC---CCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCC
Q psy2960          74 NKLVYNQH---GTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVS  150 (405)
Q Consensus        74 ~a~~~~~~---g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~  150 (405)
                      |||++.++   +++ +.++..+.|.|+|+++||+|||.++++|+.|+..+.|..+. ..+|.++|+|++|+|+++|++++
T Consensus         1 ~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~   78 (336)
T TIGR02817         1 KAVGYKKPLPITDP-DALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPE-AGQPKILGWDAAGVVVAVGDEVT   78 (336)
T ss_pred             CceeeccccCCCCc-ccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCC-CCCCcccceeeEEEEEEeCCCCC
Confidence            57888886   554 56888999999999999999999999999999988886543 35688999999999999999999


Q ss_pred             CCCCCCEEEecC--CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCC-----CCEEEEeCCC
Q psy2960         151 SLAVGDHVIPDT--QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSP-----GDVVIQNGAN  223 (405)
Q Consensus       151 ~~~~GdrV~~~~--~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~-----g~~VLI~ga~  223 (405)
                      .|++||+|+++.  ...|+|++|+.++.+.++++|++++++++++++++++|||+++...+++++     |++|||+|++
T Consensus        79 ~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~  158 (336)
T TIGR02817        79 LFKPGDEVWYAGDIDRPGSNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGA  158 (336)
T ss_pred             CCCCCCEEEEcCCCCCCCcccceEEEcHHHcccCCCCCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCC
Confidence            999999999873  235899999999999999999999999999999999999999988888887     9999999999


Q ss_pred             cHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEEeCh-hhHHH-HhhhcCCCCCcEEEECCCc-hhHHHH
Q psy2960         224 SACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTE-EELRN-ISRDASIPKPKLALNCVGG-NSATNL  299 (405)
Q Consensus       224 G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~-~d~~~-i~~~t~g~g~Dvvld~~g~-~~~~~~  299 (405)
                      |++|++++|+|+.+ |+++++++++++    +.+.++++|+++++++ .++.. +.+. .++++|+++||+++ .....+
T Consensus       159 g~vg~~~~~~ak~~~G~~vi~~~~~~~----~~~~l~~~g~~~~~~~~~~~~~~i~~~-~~~~vd~vl~~~~~~~~~~~~  233 (336)
T TIGR02817       159 GGVGSILIQLARQLTGLTVIATASRPE----SQEWVLELGAHHVIDHSKPLKAQLEKL-GLEAVSYVFSLTHTDQHFKEI  233 (336)
T ss_pred             cHHHHHHHHHHHHhCCCEEEEEcCcHH----HHHHHHHcCCCEEEECCCCHHHHHHHh-cCCCCCEEEEcCCcHHHHHHH
Confidence            99999999999998 999999986643    4677788999999974 34545 6653 45689999999854 666788


Q ss_pred             HHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecc-hhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceee--
Q psy2960         300 LRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMT-RWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFV--  376 (405)
Q Consensus       300 ~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~--  376 (405)
                      +++++++|+++.++..    ..++...+..+++++.+..+. ......+........++++++++.+|.+++.+.+.|  
T Consensus       234 ~~~l~~~G~~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~  309 (336)
T TIGR02817       234 VELLAPQGRFALIDDP----AELDISPFKRKSISLHWEFMFTRSMFQTADMIEQHHLLNRVARLVDAGKIRTTLAETFGT  309 (336)
T ss_pred             HHHhccCCEEEEEccc----ccccchhhhhcceEEEEEEeecccccchhhhhhhHHHHHHHHHHHHCCCeeccchhccCC
Confidence            9999999999988532    123333444466777765433 111111111112356889999999999998766665  


Q ss_pred             -ehhhHHHHHHHHhhhcCCCCceEEEE
Q psy2960         377 -TLKNFQEALMNTMSIQGKSGVKYYID  402 (405)
Q Consensus       377 -~~~~~~~A~~~~~~~~~~~~gKvvl~  402 (405)
                       +++++++||+.+.  +++..||+|++
T Consensus       310 ~~~~~~~~a~~~~~--~~~~~gkvvv~  334 (336)
T TIGR02817       310 INAANLKRAHALIE--SGKARGKIVLE  334 (336)
T ss_pred             CCHHHHHHHHHHHH--cCCccceEEEe
Confidence             4799999999999  88889999875

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=100.00  E-value=6e-42  Score=328.01  Aligned_cols=310  Identities=23%  Similarity=0.320  Sum_probs=247.9

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCC-CCccceEEEEEEEcCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPA-VPGFEGVGEVVEVGSDVSS  151 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~-~lG~E~~G~V~~vG~~v~~  151 (405)
                      |+++++..++..   .++++.+.|.+.++||+|||.++|||++|++.+.|..+.. ..|. ++|||++|+|+++| .++.
T Consensus         1 m~a~~~~~~~~~---~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~~-~~~~~i~GHE~~G~V~evG-~~~~   75 (350)
T COG1063           1 MKAAVVYVGGGD---VRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFV-PPGDIILGHEFVGEVVEVG-VVRG   75 (350)
T ss_pred             CceeEEEecCCc---cccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCCC-CCCCcccCccceEEEEEec-cccC
Confidence            667777776653   3377777777899999999999999999999999976653 3344 99999999999999 7788


Q ss_pred             CCCCCEEEecC------------------C-------------CCCcccceEeecccceEE-cCCCCChhhhccCCCcHH
Q psy2960         152 LAVGDHVIPDT------------------Q-------------HLGTWRNYGKFNHDVLMK-VPKDIALTEISGITSNPC  199 (405)
Q Consensus       152 ~~~GdrV~~~~------------------~-------------~~G~~a~~~~v~~~~~~~-iP~~~s~~~Aa~~~~~~~  199 (405)
                      +++||||+..+                  .             .+|+|+||+.+|.+++++ +||++ ..+++++..++.
T Consensus        76 ~~~GdrVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G~~aEyv~vp~~~~~~~~pd~~-~~~~aal~epla  154 (350)
T COG1063          76 FKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPADFNLAKLPDGI-DEEAAALTEPLA  154 (350)
T ss_pred             CCCCCEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCCceEEEEEeccccCeecCCCCC-ChhhhhhcChhh
Confidence            99999999763                  1             248999999999765555 58888 455555556899


Q ss_pred             HHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH-cCCcEEeChhh--HHH-H
Q psy2960         200 TAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADYVFTEEE--LRN-I  275 (405)
Q Consensus       200 ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~-lg~~~v~~~~d--~~~-i  275 (405)
                      ++|++.......+++++|+|.|+ |++|++++++|+.+|+..++++   +..++|++++++ .|++.+++...  ... +
T Consensus       155 ~~~~~~a~~~~~~~~~~V~V~Ga-GpIGLla~~~a~~~Ga~~Viv~---d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~  230 (350)
T COG1063         155 TAYHGHAERAAVRPGGTVVVVGA-GPIGLLAIALAKLLGASVVIVV---DRSPERLELAKEAGGADVVVNPSEDDAGAEI  230 (350)
T ss_pred             hhhhhhhhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCceEEEe---CCCHHHHHHHHHhCCCeEeecCccccHHHHH
Confidence            99887555566777779999999 9999999999999999888888   555788999999 77777776533  334 8


Q ss_pred             hhhcCCCCCcEEEECCCchhH-HHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHH
Q psy2960         276 SRDASIPKPKLALNCVGGNSA-TNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKS  354 (405)
Q Consensus       276 ~~~t~g~g~Dvvld~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~  354 (405)
                      .+.|++.|+|++|||+|.... ..++++++++|+++.+|........++...++.|++++.|++...          ...
T Consensus       231 ~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~~~~~~~~~~~~kel~l~gs~~~~----------~~~  300 (350)
T COG1063         231 LELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLRPS----------GRE  300 (350)
T ss_pred             HHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccCCccCccCHHHHHhcccEEEeccCCC----------Ccc
Confidence            888989999999999997654 578999999999999996544432566677888999999984311          134


Q ss_pred             HHHHHHHHHHcCcccCC--cceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         355 MMNELTEMMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       355 ~~~~~~~~~~~g~l~~~--~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      .++.+++++++|++.+.  +++.++++++++||+.+.+ ......|++|++
T Consensus       301 ~~~~~~~ll~~g~i~~~~lit~~~~~~~~~~a~~~~~~-~~~~~~Kv~i~~  350 (350)
T COG1063         301 DFERALDLLASGKIDPEKLITHRLPLDDAAEAYELFAD-RKEEAIKVVLKP  350 (350)
T ss_pred             cHHHHHHHHHcCCCChhHceEeeccHHHHHHHHHHHHh-cCCCeEEEEecC
Confidence            58889999999999875  6789999999999999983 233367999864

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=100.00  E-value=1.3e-41  Score=329.50  Aligned_cols=311  Identities=24%  Similarity=0.340  Sum_probs=258.2

Q ss_pred             cceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCC
Q psy2960          71 YLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVS  150 (405)
Q Consensus        71 ~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~  150 (405)
                      ++|||+++++++.+   +++++.|.|++.++||+|||.++|+|++|++...|.++.  .+|.++|||++|+|+++|+++.
T Consensus         1 ~~~~a~~~~~~~~~---~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~~--~~p~v~G~e~~G~V~~vG~~v~   75 (365)
T cd08278           1 MKTTAAVVREPGGP---FVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLPT--PLPAVLGHEGAGVVEAVGSAVT   75 (365)
T ss_pred             CccEEeeeccCCCc---ceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCCC--CCCcccccceeEEEEEeCCCcc
Confidence            57999999997765   788999999999999999999999999999999987652  4688999999999999999999


Q ss_pred             CCCCCCEEEecC------------------------------------------------CCCCcccceEeecccceEEc
Q psy2960         151 SLAVGDHVIPDT------------------------------------------------QHLGTWRNYGKFNHDVLMKV  182 (405)
Q Consensus       151 ~~~~GdrV~~~~------------------------------------------------~~~G~~a~~~~v~~~~~~~i  182 (405)
                      ++++||+|++..                                                ...|+|++|+.+++.+++++
T Consensus        76 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~i  155 (365)
T cd08278          76 GLKPGDHVVLSFASCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKV  155 (365)
T ss_pred             cCCCCCEEEEcccCCCCChHHhCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeEEEecchhEEEC
Confidence            999999999521                                                12488999999999999999


Q ss_pred             CCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcC
Q psy2960         183 PKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG  262 (405)
Q Consensus       183 P~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg  262 (405)
                      |+++++++++.+++++.||++++...+.+++|++|||+|+ |++|++++|+|+++|++++++++.   .+.+.+.++++|
T Consensus       156 P~~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~-g~vG~~~~~la~~~G~~~v~~~~~---~~~k~~~~~~~g  231 (365)
T cd08278         156 DKDVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGA-GAVGLAAVMAAKIAGCTTIIAVDI---VDSRLELAKELG  231 (365)
T ss_pred             CCCCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHHHHcC
Confidence            9999999999999999999999988889999999999976 999999999999999975555533   234577888999


Q ss_pred             CcEEeChhh--HHH-HhhhcCCCCCcEEEECCCc-hhHHHHHHhcccCCEEEEEeccC-CCCcccCcccccccCeEEEEE
Q psy2960         263 ADYVFTEEE--LRN-ISRDASIPKPKLALNCVGG-NSATNLLRTLVSKGVMVTYGGMS-REPVQIPTSAFIFKDITLRGH  337 (405)
Q Consensus       263 ~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~-~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~k~~~~~g~  337 (405)
                      ++.++++++  +.+ +.+.+ +.++|+++||+|+ .....++++++++|+++.+|... .....++...++.+++++.++
T Consensus       232 ~~~~i~~~~~~~~~~v~~~~-~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  310 (365)
T cd08278         232 ATHVINPKEEDLVAAIREIT-GGGVDYALDTTGVPAVIEQAVDALAPRGTLALVGAPPPGAEVTLDVNDLLVSGKTIRGV  310 (365)
T ss_pred             CcEEecCCCcCHHHHHHHHh-CCCCcEEEECCCCcHHHHHHHHHhccCCEEEEeCcCCCCCccccCHHHHhhcCceEEEe
Confidence            999998653  445 77777 7789999999986 55678899999999999999643 223345555555789999988


Q ss_pred             ecchhhhhhccHHHHHHHHHHHHHHHHcCcccC-CcceeeehhhHHHHHHHHhhhcCCCCceEEEE
Q psy2960         338 WMTRWQKENKESAERKSMMNELTEMMRTGKLAA-PAHKFVTLKNFQEALMNTMSIQGKSGVKYYID  402 (405)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~-~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~  402 (405)
                      .....        ...+.++++++++++|++++ .+.+.|+++++++||+.+.  +++. .|+||+
T Consensus       311 ~~~~~--------~~~~~~~~~~~~l~~g~l~~~~~~~~~~l~~~~~a~~~~~--~~~~-~k~~~~  365 (365)
T cd08278         311 IEGDS--------VPQEFIPRLIELYRQGKFPFDKLVTFYPFEDINQAIADSE--SGKV-IKPVLR  365 (365)
T ss_pred             ecCCc--------ChHHHHHHHHHHHHcCCCChHHheEEecHHHHHHHHHHHH--CCCc-eEEEEC
Confidence            75431        11355788889999999865 3557899999999999988  6664 488874

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=100.00  E-value=1.8e-41  Score=325.54  Aligned_cols=307  Identities=23%  Similarity=0.311  Sum_probs=259.3

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCC--CCCCCCCCccceEEEEEEEcCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPI--KPTLPAVPGFEGVGEVVEVGSDVS  150 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~p~~lG~E~~G~V~~vG~~v~  150 (405)
                      ||++++++++++   +.+.+.|.|++.++||+||+.++++|++|++...|.++.  ...+|.++|+|++|+|+++|+++.
T Consensus         1 ~ka~~~~~~~~~---~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~   77 (340)
T cd05284           1 MKAARLYEYGKP---LRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVD   77 (340)
T ss_pred             CeeeEeccCCCC---ceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCC
Confidence            789999988765   888899999999999999999999999999999887652  345688999999999999999999


Q ss_pred             CCCCCCEEEecCC--------------------------CCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHH
Q psy2960         151 SLAVGDHVIPDTQ--------------------------HLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRM  204 (405)
Q Consensus       151 ~~~~GdrV~~~~~--------------------------~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~a  204 (405)
                      .|++||+|++.+.                          ..|+|++|+.++.+.++++|+++++++++++++.++|||++
T Consensus        78 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~P~~ls~~~aa~l~~~~~ta~~~  157 (340)
T cd05284          78 GLKEGDPVVVHPPWGCGTCRYCRRGEENYCENARFPGIGTDGGFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHA  157 (340)
T ss_pred             cCcCCCEEEEcCCCCCCCChHHhCcCcccCCCCcccCccCCCcceeeEEecHHHeEECCCCCCHHHhhhhcchHHHHHHH
Confidence            9999999997631                          25899999999999999999999999999999999999999


Q ss_pred             HHhh-cCCCCCCEEEEeCCCcHHHHHHHHHHHHcC-CcEEEEecCCcchHHHHHHHHHcCCcEEeChhh-HHH-HhhhcC
Q psy2960         205 LKDY-NSLSPGDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE-LRN-ISRDAS  280 (405)
Q Consensus       205 l~~~-~~~~~g~~VLI~ga~G~vG~~aiqla~~~G-~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d-~~~-i~~~t~  280 (405)
                      +... ..+.+|++|||+|+ |++|++++|+|+.+| +++++++++++    +.+.++++|+++++++++ +.. +.+.+.
T Consensus       158 l~~~~~~~~~~~~vlI~g~-~~vg~~~~~~a~~~g~~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~i~~~~~  232 (340)
T cd05284         158 VKKALPYLDPGSTVVVIGV-GGLGHIAVQILRALTPATVIAVDRSEE----ALKLAERLGADHVLNASDDVVEEVRELTG  232 (340)
T ss_pred             HHHhcccCCCCCEEEEEcC-cHHHHHHHHHHHHhCCCcEEEEeCCHH----HHHHHHHhCCcEEEcCCccHHHHHHHHhC
Confidence            9875 46889999999996 679999999999999 79988876543    366778899999998654 444 777777


Q ss_pred             CCCCcEEEECCCc-hhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHH
Q psy2960         281 IPKPKLALNCVGG-NSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNEL  359 (405)
Q Consensus       281 g~g~Dvvld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  359 (405)
                      +.++|+++||+|+ .....++++++++|+++.+|....  ..++....+.+++++.++....           ...+..+
T Consensus       233 ~~~~dvvld~~g~~~~~~~~~~~l~~~g~~i~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~  299 (340)
T cd05284         233 GRGADAVIDFVGSDETLALAAKLLAKGGRYVIVGYGGH--GRLPTSDLVPTEISVIGSLWGT-----------RAELVEV  299 (340)
T ss_pred             CCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEEcCCCC--CccCHHHhhhcceEEEEEeccc-----------HHHHHHH
Confidence            7889999999996 566778999999999999985432  2333334356899999876432           3457788


Q ss_pred             HHHHHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         360 TEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       360 ~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      ++++++|.+++ +.+.|+++++++||+.+.  +++..||+|+.+
T Consensus       300 ~~~l~~g~l~~-~~~~~~~~~~~~a~~~~~--~~~~~gkvv~~~  340 (340)
T cd05284         300 VALAESGKVKV-EITKFPLEDANEALDRLR--EGRVTGRAVLVP  340 (340)
T ss_pred             HHHHHhCCCCc-ceEEEeHHHHHHHHHHHH--cCCccceEEecC
Confidence            89999999886 567899999999999999  888999999864

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=100.00  E-value=1.8e-41  Score=323.78  Aligned_cols=320  Identities=22%  Similarity=0.286  Sum_probs=262.9

Q ss_pred             ceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCC
Q psy2960          72 LANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSS  151 (405)
Q Consensus        72 ~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~  151 (405)
                      +||++.+.++|.+ ..+++++.|.|.|+++||+|||.++|+|++|++...|.++. +.+|.++|||++|+|+.+|++++.
T Consensus         1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~vG~~v~~   78 (327)
T PRK10754          1 MAKRIEFHKHGGP-EVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPP-PSLPSGLGTEAAGVVSKVGSGVKH   78 (327)
T ss_pred             CceEEEEeccCCh-hHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCC-CCCCCccCcceEEEEEEeCCCCCC
Confidence            5999999998876 56999999999999999999999999999999998887654 246889999999999999999999


Q ss_pred             CCCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHH
Q psy2960         152 LAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVI  231 (405)
Q Consensus       152 ~~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~ai  231 (405)
                      +++||+|++.....|+|++|+.++...++++|+++++++++.+++.++|||+++...+.+++|++|+|+|++|++|++++
T Consensus        79 ~~~Gd~V~~~~~~~g~~~~~v~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~  158 (327)
T PRK10754         79 IKVGDRVVYAQSALGAYSSVHNVPADKAAILPDAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIAC  158 (327)
T ss_pred             CCCCCEEEECCCCCcceeeEEEcCHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHH
Confidence            99999998764456899999999999999999999999999999999999999988889999999999999999999999


Q ss_pred             HHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChh--hHHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCE
Q psy2960         232 QIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGV  308 (405)
Q Consensus       232 qla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~--d~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~  308 (405)
                      |+|+.+|++++++++++    .+++.++++|++++++.+  ++.+ +++.+++.++|+++||+|+.....++++++++|+
T Consensus       159 ~lak~~G~~v~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~~~~~~~~~~~~l~~~g~  234 (327)
T PRK10754        159 QWAKALGAKLIGTVGSA----QKAQRAKKAGAWQVINYREENIVERVKEITGGKKVRVVYDSVGKDTWEASLDCLQRRGL  234 (327)
T ss_pred             HHHHHcCCEEEEEeCCH----HHHHHHHHCCCCEEEcCCCCcHHHHHHHHcCCCCeEEEEECCcHHHHHHHHHHhccCCE
Confidence            99999999999887553    346777889999888764  3555 7888888899999999999888889999999999


Q ss_pred             EEEEeccCCCCcccCcccccccCeEE-EEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCC--cceeeehhhHHHHH
Q psy2960         309 MVTYGGMSREPVQIPTSAFIFKDITL-RGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAP--AHKFVTLKNFQEAL  385 (405)
Q Consensus       309 ~v~~g~~~~~~~~~~~~~~~~k~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~--~~~~~~~~~~~~A~  385 (405)
                      ++.+|........++...+..++..+ .......+..   .++...+.+..+++++.+|.+++.  +.+.|+++++++||
T Consensus       235 ~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~~~~~~~a~  311 (327)
T PRK10754        235 MVSFGNASGPVTGVNLGILNQKGSLYVTRPSLQGYIT---TREELTEASNELFSLIASGVIKVDVAEQQKFPLKDAQRAH  311 (327)
T ss_pred             EEEEccCCCCCCCcCHHHHhccCceEEecceeecccC---CHHHHHHHHHHHHHHHHCCCeeeecccCcEEcHHHHHHHH
Confidence            99998654221222222222122111 1111111111   124455667889999999999854  57899999999999


Q ss_pred             HHHhhhcCCCCceEEEE
Q psy2960         386 MNTMSIQGKSGVKYYID  402 (405)
Q Consensus       386 ~~~~~~~~~~~gKvvl~  402 (405)
                      +.+.  +++..+|+||.
T Consensus       312 ~~~~--~~~~~~~~~~~  326 (327)
T PRK10754        312 EILE--SRATQGSSLLI  326 (327)
T ss_pred             HHHH--cCCCcceEEEe
Confidence            9999  88999999986

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.8e-41  Score=326.84  Aligned_cols=310  Identities=23%  Similarity=0.361  Sum_probs=258.8

Q ss_pred             eeEEEEccCCCCccceEeee-ecCCCCCCCeEEEEEEEeecChhhhhhhcccCCC-------------------CCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVEN-ETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPI-------------------KPTLPA  132 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~-~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-------------------~~~~p~  132 (405)
                      ||++++.+++.+ ..+.+.+ .+.|.+.+++|+|||.++++|++|++...|.++.                   ...+|.
T Consensus         1 ~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~   79 (350)
T cd08274           1 MRAVLLTGHGGL-DKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPR   79 (350)
T ss_pred             CeEEEEeccCCc-cceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCc
Confidence            688888877654 3355654 5778889999999999999999999988876531                   235688


Q ss_pred             CCccceEEEEEEEcCCCCCCCCCCEEEecC------------------CCCCcccceEeecccceEEcCCCCChhhhccC
Q psy2960         133 VPGFEGVGEVVEVGSDVSSLAVGDHVIPDT------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGI  194 (405)
Q Consensus       133 ~lG~E~~G~V~~vG~~v~~~~~GdrV~~~~------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~  194 (405)
                      ++|||++|+|+++|+++++|++||||++.+                  ...|++++|+.++...++++|+++++++++++
T Consensus        80 ~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~a~l  159 (350)
T cd08274          80 IQGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPADIDYIGSERDGGFAEYTVVPAENAYPVNSPLSDVELATF  159 (350)
T ss_pred             ccCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCccccccccccCCCCCccceEEEEecHHHceeCCCCCCHHHHHhc
Confidence            999999999999999999999999999841                  12489999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--H
Q psy2960         195 TSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--L  272 (405)
Q Consensus       195 ~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~  272 (405)
                      ++++.|||+++ ..+++++|++|||+|++|++|++++|+|+++|+++++++++.     +++.++++|++.+++..+  .
T Consensus       160 ~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-----~~~~~~~~g~~~~~~~~~~~~  233 (350)
T cd08274         160 PCSYSTAENML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-----KEEAVRALGADTVILRDAPLL  233 (350)
T ss_pred             ccHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-----hhHHHHhcCCeEEEeCCCccH
Confidence            99999999998 558999999999999999999999999999999998887442     367778899987665432  2


Q ss_pred             HHHhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHH
Q psy2960         273 RNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAER  352 (405)
Q Consensus       273 ~~i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~  352 (405)
                      .+ .+.+.+.++|++|||+|++....++++++++|+++.+|........++...++.+++++.++....           
T Consensus       234 ~~-~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  301 (350)
T cd08274         234 AD-AKALGGEPVDVVADVVGGPLFPDLLRLLRPGGRYVTAGAIAGPVVELDLRTLYLKDLTLFGSTLGT-----------  301 (350)
T ss_pred             HH-HHhhCCCCCcEEEecCCHHHHHHHHHHhccCCEEEEecccCCccccCCHHHhhhcceEEEEeecCC-----------
Confidence            22 445667889999999999888889999999999999985533223455555677899999887532           


Q ss_pred             HHHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         353 KSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       353 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      .+.+.++++++.++++++.++++|+++++++||+.+.  .+...+|+|+++
T Consensus       302 ~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~a~~~~~--~~~~~~kvvi~~  350 (350)
T cd08274         302 REVFRRLVRYIEEGEIRPVVAKTFPLSEIREAQAEFL--EKRHVGKLVLVP  350 (350)
T ss_pred             HHHHHHHHHHHHCCCcccccccccCHHHHHHHHHHHh--cCCCceEEEEeC
Confidence            3457888999999999888889999999999999999  788899999864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>KOG1198|consensus

Probab=100.00  E-value=1.6e-41  Score=321.02  Aligned_cols=323  Identities=21%  Similarity=0.287  Sum_probs=250.0

Q ss_pred             ceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCC---CCCCCCccceEEE---EEEE
Q psy2960          72 LANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKP---TLPAVPGFEGVGE---VVEV  145 (405)
Q Consensus        72 ~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~---~~p~~lG~E~~G~---V~~v  145 (405)
                      +++.+.+..+.++...+..++.|+|.|.++|++|++.++++|+.|+++..|.+...+   .+|.+++.+++|+   +...
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~   83 (347)
T KOG1198|consen    4 KIRRVSLVSPPGGGEVLFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESV   83 (347)
T ss_pred             ccceEEEeccCCCcceEEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEecc
Confidence            344455544444435577789999999999999999999999999999999877655   6786666655554   4555


Q ss_pred             c-CCCCCCCCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhc------CCCCCCEEE
Q psy2960         146 G-SDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYN------SLSPGDVVI  218 (405)
Q Consensus       146 G-~~v~~~~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~------~~~~g~~VL  218 (405)
                      | ..+..+..||++... ...|+|+||++++...++++|+++++++||++|.+++|||.++...+      +.++|++||
T Consensus        84 g~~~~~~~~~g~~~~~~-~~~g~~aey~v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vL  162 (347)
T KOG1198|consen   84 GDDVVGGWVHGDAVVAF-LSSGGLAEYVVVPEKLLVKIPESLSFEEAAALPLAALTALSALFQLAPGKRSKKLSKGKSVL  162 (347)
T ss_pred             ccccccceEeeeEEeec-cCCCceeeEEEcchhhccCCCCccChhhhhcCchHHHHHHHHHHhccccccccccCCCCeEE
Confidence            5 345568888888877 45799999999999999999999999999999999999999999988      899999999


Q ss_pred             EeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCCCCCcEEEECCCchh
Q psy2960         219 QNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIPKPKLALNCVGGNS  295 (405)
Q Consensus       219 I~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~  295 (405)
                      |+||+|+||++++|+|++.|+.+++++++.+.    .++++++|+|+++|+++  ..+ +++.| +.++|+||||+|+..
T Consensus       163 v~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~----~~l~k~lGAd~vvdy~~~~~~e~~kk~~-~~~~DvVlD~vg~~~  237 (347)
T KOG1198|consen  163 VLGGSGGVGTAAIQLAKHAGAIKVVTACSKEK----LELVKKLGADEVVDYKDENVVELIKKYT-GKGVDVVLDCVGGST  237 (347)
T ss_pred             EEeCCcHHHHHHHHHHHhcCCcEEEEEcccch----HHHHHHcCCcEeecCCCHHHHHHHHhhc-CCCccEEEECCCCCc
Confidence            99999999999999999999666666666554    78999999999999877  455 77777 889999999999988


Q ss_pred             HHHHHHhcccCCEEEEEeccCCCCcccCcc----cccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCC
Q psy2960         296 ATNLLRTLVSKGVMVTYGGMSREPVQIPTS----AFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAP  371 (405)
Q Consensus       296 ~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~----~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~  371 (405)
                      ...++.++..+|+...++.......+.+..    .+........+.+..++.....  ....+.++.+.++++.|+|+|.
T Consensus       238 ~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~l~~~ie~gkikp~  315 (347)
T KOG1198|consen  238 LTKSLSCLLKGGGGAYIGLVGDELANYKLDDLWQSANGIKLYSLGLKGVNYRWLYF--VPSAEYLKALVELIEKGKIKPV  315 (347)
T ss_pred             cccchhhhccCCceEEEEeccccccccccccchhhhhhhhheeeeeeccceeeeee--cCCHHHHHHHHHHHHcCcccCC
Confidence            888889999888765555332211111111    0000011111111111111111  2235678999999999999999


Q ss_pred             cceeeehhhHHHHHHHHhhhcCCCCceEEEEec
Q psy2960         372 AHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       372 ~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                      +.+.||++++.+||+.+.  +....||+++.+.
T Consensus       316 i~~~~p~~~~~ea~~~~~--~~~~~GK~vl~~~  346 (347)
T KOG1198|consen  316 IDSVYPFSQAKEAFEKLE--KSHATGKVVLEKD  346 (347)
T ss_pred             cceeeeHHHHHHHHHHHh--hcCCcceEEEEec
Confidence            999999999999999999  8899999999874

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=100.00  E-value=9.5e-41  Score=318.06  Aligned_cols=308  Identities=42%  Similarity=0.669  Sum_probs=264.9

Q ss_pred             ceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCCCCCCEEEecCCCCC
Q psy2960          87 VVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLG  166 (405)
Q Consensus        87 ~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~~GdrV~~~~~~~G  166 (405)
                      .+++++.|.|.+.+++|+|||.++++|+.|...+.|.++..+.+|.++|||++|+|+.+|++++.+++||+|++.+ ..|
T Consensus        13 ~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~-~~g   91 (323)
T cd05282          13 VLELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLG-GEG   91 (323)
T ss_pred             eEEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeC-CCC
Confidence            5888899999999999999999999999999998887654445688999999999999999999999999999983 258


Q ss_pred             cccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEec
Q psy2960         167 TWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVR  246 (405)
Q Consensus       167 ~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~  246 (405)
                      +|++|+.++...++++|+++++++++.+++.++|||+++...+.+.+|++|||+|++|++|++++|+|+.+|++++++++
T Consensus        92 ~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~  171 (323)
T cd05282          92 TWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVR  171 (323)
T ss_pred             cceeEEecCHHHeEECCCCCCHHHHHHHhccHHHHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEec
Confidence            99999999999999999999999999999999999999988888999999999999999999999999999999999887


Q ss_pred             CCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEeccCCCCcccC
Q psy2960         247 NRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIP  323 (405)
Q Consensus       247 ~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~  323 (405)
                      +.+    +.+.++++|+++++++++  +.. +.+.+.+.++|++|||+|+.....++++++++|+++.+|........++
T Consensus       172 ~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~  247 (323)
T cd05282         172 RDE----QVEELKALGADEVIDSSPEDLAQRVKEATGGAGARLALDAVGGESATRLARSLRPGGTLVNYGLLSGEPVPFP  247 (323)
T ss_pred             ChH----HHHHHHhcCCCEEecccchhHHHHHHHHhcCCCceEEEECCCCHHHHHHHHhhCCCCEEEEEccCCCCCCCCC
Confidence            654    356778899999998753  444 7788888899999999999888888999999999999986543333444


Q ss_pred             cccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEE
Q psy2960         324 TSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYID  402 (405)
Q Consensus       324 ~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~  402 (405)
                      ...+..+++++.++....+... ..|....+.++++++++++|.+.+.+++.|+++++++||+.+.  .++..+|+|++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~a~~~~~--~~~~~~kvv~~  323 (323)
T cd05282         248 RSVFIFKDITVRGFWLRQWLHS-ATKEAKQETFAEVIKLVEAGVLTTPVGAKFPLEDFEEAVAAAE--QPGRGGKVLLT  323 (323)
T ss_pred             HHHHhhcCceEEEEEehHhhcc-CCHHHHHHHHHHHHHHHhCCCcccCccceecHHHHHHHHHHHh--cCCCCceEeeC
Confidence            4444448999999887665432 0235667789999999999999887889999999999999999  78888999874

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=100.00  E-value=1.8e-40  Score=316.36  Aligned_cols=314  Identities=24%  Similarity=0.349  Sum_probs=258.3

Q ss_pred             eEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCCC
Q psy2960          74 NKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLA  153 (405)
Q Consensus        74 ~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~  153 (405)
                      ||+++...+.| +.+++++.|.|.++++||+||+.++++|++|++.+.|.++....+|.++|||++|+|+.  +++..|+
T Consensus         1 ~a~~~~~~~~~-~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~   77 (323)
T TIGR02823         1 KALVVEKEDGK-VSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFR   77 (323)
T ss_pred             CeEEEccCCCC-cceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCC
Confidence            67888887776 56899999999999999999999999999999999887654335688999999999988  6678899


Q ss_pred             CCCEEEecCC-----CCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhh--cCCCCCC-EEEEeCCCcH
Q psy2960         154 VGDHVIPDTQ-----HLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDY--NSLSPGD-VVIQNGANSA  225 (405)
Q Consensus       154 ~GdrV~~~~~-----~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~--~~~~~g~-~VLI~ga~G~  225 (405)
                      +||+|++...     ..|++++|+.++.+.++++|+++++++++++++.+.||++++...  +++.+|+ +|+|+|++|+
T Consensus        78 ~Gd~V~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~  157 (323)
T TIGR02823        78 EGDEVIVTGYGLGVSHDGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGG  157 (323)
T ss_pred             CCCEEEEccCCCCCCCCccceEEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcH
Confidence            9999998731     258999999999999999999999999999999999999887543  3488999 9999999999


Q ss_pred             HHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcc
Q psy2960         226 CGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCVGGNSATNLLRTLV  304 (405)
Q Consensus       226 vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~  304 (405)
                      +|++++|+|+++|+++++++++.+    +.+.++++|++++++.++... +...+.+ ++|+++||+|++....++++++
T Consensus       158 vg~~~~~la~~~G~~vi~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~d~vld~~g~~~~~~~~~~l~  232 (323)
T TIGR02823       158 VGSLAVAILSKLGYEVVASTGKAE----EEDYLKELGASEVIDREDLSPPGKPLEKE-RWAGAVDTVGGHTLANVLAQLK  232 (323)
T ss_pred             HHHHHHHHHHHcCCeEEEEeCCHH----HHHHHHhcCCcEEEccccHHHHHHHhcCC-CceEEEECccHHHHHHHHHHhC
Confidence            999999999999999998886643    347778999999998765443 4445443 5999999999988888899999


Q ss_pred             cCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHH
Q psy2960         305 SKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEA  384 (405)
Q Consensus       305 ~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A  384 (405)
                      ++|+++.+|.........+...++.+++++.+++......     ....+.++.+.+++..+.+.+. .+.|+++++++|
T Consensus       233 ~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~a  306 (323)
T TIGR02823       233 YGGAVAACGLAGGPDLPTTVLPFILRGVSLLGIDSVYCPM-----ALREAAWQRLATDLKPRNLESI-TREITLEELPEA  306 (323)
T ss_pred             CCCEEEEEcccCCCCccccHHHHhhcceEEEEEeccccCc-----hhHHHHHHHHHHHhhcCCCcCc-eeeecHHHHHHH
Confidence            9999999996533333333345557899999976542111     2334567778888888888764 568999999999


Q ss_pred             HHHHhhhcCCCCceEEEEe
Q psy2960         385 LMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       385 ~~~~~~~~~~~~gKvvl~~  403 (405)
                      |+.+.  +++..+|+|+++
T Consensus       307 ~~~~~--~~~~~~k~vv~~  323 (323)
T TIGR02823       307 LEQIL--AGQHRGRTVVDV  323 (323)
T ss_pred             HHHHh--CCCccceEEEeC
Confidence            99999  889999999864

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=100.00  E-value=2.1e-40  Score=319.62  Aligned_cols=309  Identities=20%  Similarity=0.252  Sum_probs=249.2

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||++++.+++.    +.+++.|.|.+.++||+|||.++++|++|++...|.++. ..+|.++|||++|+|+++|++++++
T Consensus         1 mka~~~~~~~~----~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~-~~~~~~~G~e~~G~V~~vG~~v~~~   75 (351)
T cd08285           1 MKAFAMLGIGK----VGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPG-ERHGMILGHEAVGVVEEVGSEVKDF   75 (351)
T ss_pred             CceEEEccCCc----cEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCC-CCCCcccCcceEEEEEEecCCcCcc
Confidence            79999999875    778999999999999999999999999999988876543 3568999999999999999999999


Q ss_pred             CCCCEEEecCC-----------------------------CCCcccceEeeccc--ceEEcCCCCChhhhccCCCcHHHH
Q psy2960         153 AVGDHVIPDTQ-----------------------------HLGTWRNYGKFNHD--VLMKVPKDIALTEISGITSNPCTA  201 (405)
Q Consensus       153 ~~GdrV~~~~~-----------------------------~~G~~a~~~~v~~~--~~~~iP~~~s~~~Aa~~~~~~~ta  201 (405)
                      ++||+|++.+.                             ..|+|+||+.++.+  .++++|+++++++++.++..+.||
T Consensus        76 ~~Gd~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~~~lP~~~~~~~aa~~~~~~~ta  155 (351)
T cd08285          76 KPGDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKDGVFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMSTG  155 (351)
T ss_pred             CCCCEEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCCcceeEEEEcchhhCceEECCCCCCHHHhhhhccchhhH
Confidence            99999997421                             25899999999974  899999999999999999999999


Q ss_pred             HHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChh--hHHH-Hhhh
Q psy2960         202 YRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRD  278 (405)
Q Consensus       202 ~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~--d~~~-i~~~  278 (405)
                      |+++ ..+.+++|++|||+|+ |++|++++|+|+.+|+.+++++++.   +++.+.++++|++++++++  ++.. +.+.
T Consensus       156 ~~~~-~~~~~~~g~~vlI~g~-g~iG~~~~~lak~~G~~~v~~~~~~---~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~  230 (351)
T cd08285         156 FHGA-ELANIKLGDTVAVFGI-GPVGLMAVAGARLRGAGRIIAVGSR---PNRVELAKEYGATDIVDYKNGDVVEQILKL  230 (351)
T ss_pred             HHHH-HccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCC---HHHHHHHHHcCCceEecCCCCCHHHHHHHH
Confidence            9996 5589999999999975 9999999999999999755444332   3457888899999999865  3444 7777


Q ss_pred             cCCCCCcEEEECCCch-hHHHHHHhcccCCEEEEEeccCCC-CcccCc--ccccccCeEEEEEecchhhhhhccHHHHHH
Q psy2960         279 ASIPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSRE-PVQIPT--SAFIFKDITLRGHWMTRWQKENKESAERKS  354 (405)
Q Consensus       279 t~g~g~Dvvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~--~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~  354 (405)
                      +.+.++|+++||+|+. ....++++++++|+++.+|..... ...++.  .....+..++.+.+...          ..+
T Consensus       231 ~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----------~~~  300 (351)
T cd08285         231 TGGKGVDAVIIAGGGQDTFEQALKVLKPGGTISNVNYYGEDDYLPIPREEWGVGMGHKTINGGLCPG----------GRL  300 (351)
T ss_pred             hCCCCCcEEEECCCCHHHHHHHHHHhhcCCEEEEecccCCCceeecChhhhhhhccccEEEEeecCC----------ccc
Confidence            7778899999999975 556789999999999999865432 122221  11223455565543211          124


Q ss_pred             HHHHHHHHHHcCcccC---CcceeeehhhHHHHHHHHhhhcCC-CCceEEEEe
Q psy2960         355 MMNELTEMMRTGKLAA---PAHKFVTLKNFQEALMNTMSIQGK-SGVKYYIDF  403 (405)
Q Consensus       355 ~~~~~~~~~~~g~l~~---~~~~~~~~~~~~~A~~~~~~~~~~-~~gKvvl~~  403 (405)
                      .++++++++++|++++   ...++|+++++++||+.+.  +++ ..+|++|++
T Consensus       301 ~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~a~~~~~--~~~~~~~k~~~~~  351 (351)
T cd08285         301 RMERLASLIEYGRVDPSKLLTHHFFGFDDIEEALMLMK--DKPDDLIKPVIIF  351 (351)
T ss_pred             cHHHHHHHHHcCCCChhhceeccccCHHHHHHHHHHHh--cccCCeEEEEEeC
Confidence            5788899999999998   2345699999999999998  665 468999874

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=100.00  E-value=2.8e-40  Score=315.42  Aligned_cols=316  Identities=24%  Similarity=0.317  Sum_probs=249.8

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||||+++++|++ ..+.+++.|.|.|.++||+||+.++++|++|.....+.......+|.++|||++|+|++.  ++.++
T Consensus         1 ~~a~~~~~~~~~-~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~--~~~~~   77 (326)
T cd08289           1 FQALVVEKDEDD-VSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVES--NDPRF   77 (326)
T ss_pred             CeeEEEeccCCc-ceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEc--CCCCC
Confidence            799999998875 468889999999999999999999999999987765322112245889999999999995  45789


Q ss_pred             CCCCEEEecCC-----CCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhc--C-CCCCCEEEEeCCCc
Q psy2960         153 AVGDHVIPDTQ-----HLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYN--S-LSPGDVVIQNGANS  224 (405)
Q Consensus       153 ~~GdrV~~~~~-----~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~--~-~~~g~~VLI~ga~G  224 (405)
                      ++||+|++...     ..|+|++|+.++.+.++++|+++++++++.+++++.||++++....  . ...|++|||+|++|
T Consensus        78 ~~Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g  157 (326)
T cd08289          78 KPGDEVIVTSYDLGVSHHGGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATG  157 (326)
T ss_pred             CCCCEEEEcccccCCCCCCcceeEEEEcHHHeEECCCCCCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCc
Confidence            99999998731     3699999999999999999999999999999999999999886432  3 33578999999999


Q ss_pred             HHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhH-HH-HhhhcCCCCCcEEEECCCchhHHHHHHh
Q psy2960         225 ACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEEL-RN-ISRDASIPKPKLALNCVGGNSATNLLRT  302 (405)
Q Consensus       225 ~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~-~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~  302 (405)
                      ++|++++|+|+.+|+++++++++++    +.+.++++|++++++.++. .+ +.+.+ +.++|++|||+|+.....++++
T Consensus       158 ~vg~~~~~~a~~~g~~v~~~~~~~~----~~~~~~~~g~~~v~~~~~~~~~~~~~~~-~~~~d~vld~~g~~~~~~~~~~  232 (326)
T cd08289         158 GVGSLAVSILAKLGYEVVASTGKAD----AADYLKKLGAKEVIPREELQEESIKPLE-KQRWAGAVDPVGGKTLAYLLST  232 (326)
T ss_pred             hHHHHHHHHHHHCCCeEEEEecCHH----HHHHHHHcCCCEEEcchhHHHHHHHhhc-cCCcCEEEECCcHHHHHHHHHH
Confidence            9999999999999999998886643    4677789999999987653 33 55553 5689999999999888889999


Q ss_pred             cccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHH
Q psy2960         303 LVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQ  382 (405)
Q Consensus       303 l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~  382 (405)
                      ++++|+++.+|.......+.+...++.+++++.+++......     ....+.+..+.+.+..+.+...++++|++++++
T Consensus       233 l~~~G~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  307 (326)
T cd08289         233 LQYGGSVAVSGLTGGGEVETTVFPFILRGVNLLGIDSVECPM-----ELRRRIWRRLATDLKPTQLLNEIKQEITLDELP  307 (326)
T ss_pred             hhcCCEEEEEeecCCCCCCcchhhhhhccceEEEEEeEecCc-----hHHHHHHHHHHhhcCccccccccceEeeHHHHH
Confidence            999999999996533333333455667899999986432100     112234444444443333334468999999999


Q ss_pred             HHHHHHhhhcCCCCceEEEEe
Q psy2960         383 EALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       383 ~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      +||+.+.  +++..||+|+++
T Consensus       308 ~a~~~~~--~~~~~gkvvv~~  326 (326)
T cd08289         308 EALKQIL--QGRVTGRTVVKL  326 (326)
T ss_pred             HHHHHHh--cCcccceEEEeC
Confidence            9999999  889999999874

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=3.9e-40  Score=316.47  Aligned_cols=310  Identities=25%  Similarity=0.356  Sum_probs=261.5

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||++++.+++.  ..+++.+.|.|.|.++|++||+.++++|++|+....|.++.....|.++|||++|+|+++|++++.+
T Consensus         1 m~a~~~~~~~~--~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~   78 (341)
T cd08297           1 MKAAVVEEFGE--KPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGL   78 (341)
T ss_pred             CceEEeeccCC--CCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCC
Confidence            78999998871  3488999999999999999999999999999999888765444567789999999999999999999


Q ss_pred             CCCCEEEecC---------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHH
Q psy2960         153 AVGDHVIPDT---------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRML  205 (405)
Q Consensus       153 ~~GdrV~~~~---------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al  205 (405)
                      ++||+|+..+                           ...|++++|+.++.+.++++|++++++++++++..+.|||+++
T Consensus        79 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~lp~~~~~~~~a~l~~~~~ta~~~~  158 (341)
T cd08297          79 KVGDRVGVKWLYDACGKCEYCRTGDETLCPNQKNSGYTVDGTFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVTVYKAL  158 (341)
T ss_pred             CCCCEEEEecCCCCCCCCccccCCCcccCCCccccccccCCcceeEEEeccccEEECCCCCCHHHHHHHHcchHHHHHHH
Confidence            9999998742                           0258999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCCC
Q psy2960         206 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIP  282 (405)
Q Consensus       206 ~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g~  282 (405)
                      .. .++++|++|||+|+++++|++++++|+++|+++++++++++    +.+.++++|+++++++++  +.. +.+.++++
T Consensus       159 ~~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~----~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~  233 (341)
T cd08297         159 KK-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDE----KLELAKELGADAFVDFKKSDDVEAVKELTGGG  233 (341)
T ss_pred             Hh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHH----HHHHHHHcCCcEEEcCCCccHHHHHHHHhcCC
Confidence            77 58999999999999888999999999999999999986643    356778899999988653  445 77788788


Q ss_pred             CCcEEEECCCc-hhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHH
Q psy2960         283 KPKLALNCVGG-NSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTE  361 (405)
Q Consensus       283 g~Dvvld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  361 (405)
                      ++|+++||.++ .....++++++++|+++.+|.......+++...+..+++++.+.....           .+.++.+++
T Consensus       234 ~vd~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~  302 (341)
T cd08297         234 GAHAVVVTAVSAAAYEQALDYLRPGGTLVCVGLPPGGFIPLDPFDLVLRGITIVGSLVGT-----------RQDLQEALE  302 (341)
T ss_pred             CCCEEEEcCCchHHHHHHHHHhhcCCEEEEecCCCCCCCCCCHHHHHhcccEEEEeccCC-----------HHHHHHHHH
Confidence            99999996664 556678999999999999985543222444444557888988865432           345788889


Q ss_pred             HHHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         362 MMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       362 ~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      +++++.+++. .+.|+++++++||+.+.  .+.+.||+|+++
T Consensus       303 ~~~~~~l~~~-~~~~~~~~~~~a~~~~~--~~~~~gkvvi~~  341 (341)
T cd08297         303 FAARGKVKPH-IQVVPLEDLNEVFEKME--EGKIAGRVVVDF  341 (341)
T ss_pred             HHHcCCCcce-eEEEcHHHHHHHHHHHH--cCCccceEEEeC
Confidence            9999999864 47899999999999999  889999999875

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=3e-40  Score=320.38  Aligned_cols=308  Identities=23%  Similarity=0.347  Sum_probs=259.0

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCC-
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSS-  151 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~-  151 (405)
                      ||+|++.+++.+   +.+.+.|.|.++++||+||+.++++|++|+....|.++.  .+|.++|||++|+|+.+|+++++ 
T Consensus         1 ~~a~~~~~~~~~---~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~--~~p~~~g~e~~G~v~~vG~~~~~~   75 (367)
T cd08263           1 MKAAVLKGPNPP---LTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPF--PPPFVLGHEISGEVVEVGPNVENP   75 (367)
T ss_pred             CeeEEEecCCCC---cEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCCC--CCCcccccccceEEEEeCCCCCCC
Confidence            789999988754   788999999999999999999999999999999887754  56889999999999999999988 


Q ss_pred             --CCCCCEEEecC------------------------------------------------CCCCcccceEeecccceEE
Q psy2960         152 --LAVGDHVIPDT------------------------------------------------QHLGTWRNYGKFNHDVLMK  181 (405)
Q Consensus       152 --~~~GdrV~~~~------------------------------------------------~~~G~~a~~~~v~~~~~~~  181 (405)
                        |++||+|++.+                                                ...|+|++|+.++...+++
T Consensus        76 ~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  155 (367)
T cd08263          76 YGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLFRLDGGPVYMYSMGGLAEYAVVPATALAP  155 (367)
T ss_pred             CcCCCCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCcccccccCCCccccccCCcceeEEEechhhEEE
Confidence              99999999831                                                1258999999999999999


Q ss_pred             cCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCcchHHHHHHHHH
Q psy2960         182 VPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKS  260 (405)
Q Consensus       182 iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~~~~~~~~~~~~  260 (405)
                      +|++++++++++++++++|||+++...+.+++|++|||+| +|++|++++++|+.+|++ ++++.+++    .+.+.+++
T Consensus       156 ~P~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g-~g~vG~~~~~lak~~G~~~vi~~~~s~----~~~~~~~~  230 (367)
T cd08263         156 LPESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIG-VGGVGSSAIQLAKAFGASPIIAVDVRD----EKLAKAKE  230 (367)
T ss_pred             CCCCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCeEEEEeCCH----HHHHHHHH
Confidence            9999999999999999999999998888889999999996 599999999999999999 66665443    34577788


Q ss_pred             cCCcEEeChhh--HHH-HhhhcCCCCCcEEEECCCch-hHHHHHHhcccCCEEEEEeccCCC-CcccCcccccccCeEEE
Q psy2960         261 LGADYVFTEEE--LRN-ISRDASIPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSRE-PVQIPTSAFIFKDITLR  335 (405)
Q Consensus       261 lg~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~k~~~~~  335 (405)
                      +|++.++++++  +.. +.+.+.+.++|++|||+++. ....++++++++|+++.+|..... ...++...++.+++++.
T Consensus       231 ~g~~~v~~~~~~~~~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~  310 (367)
T cd08263         231 LGATHTVNAAKEDAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVVGLAPGGATAEIPITRLVRRGIKII  310 (367)
T ss_pred             hCCceEecCCcccHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEccCCCCCccccCHHHHhhCCeEEE
Confidence            99999998653  444 77777778899999999997 777889999999999999854321 22344444446888888


Q ss_pred             EEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCC--cceeeehhhHHHHHHHHhhhcCCCCceEEEE
Q psy2960         336 GHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGKSGVKYYID  402 (405)
Q Consensus       336 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~--~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~  402 (405)
                      +++...          ..+.+++++++++++.+++.  +++.|+++++.+||+.+.  ++++.||+||+
T Consensus       311 ~~~~~~----------~~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~a~~~~~--~~~~~g~~~~~  367 (367)
T cd08263         311 GSYGAR----------PRQDLPELVGLAASGKLDPEALVTHKYKLEEINEAYENLR--KGLIHGRAIVE  367 (367)
T ss_pred             ecCCCC----------cHHHHHHHHHHHHcCCCCcccceeEEecHHHHHHHHHHHh--cCCccceeeeC
Confidence            753221          13467888999999999874  578899999999999999  88889999974

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=5.6e-40  Score=310.33  Aligned_cols=303  Identities=21%  Similarity=0.280  Sum_probs=254.5

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||++++++.+ | ..+++++.|.|.++++||+||+.++++|+.|++...+.     ..|.++|||++|+|+++|++++.|
T Consensus         1 ~~~~~~~~~~-~-~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~-----~~~~~~g~e~~G~v~~~G~~v~~~   73 (305)
T cd08270           1 MRALVVDPDA-P-LRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAER-----PDGAVPGWDAAGVVERAAADGSGP   73 (305)
T ss_pred             CeEEEEccCC-C-ceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhccC-----CCCCcccceeEEEEEEeCCCCCCC
Confidence            6899998865 4 45888899999999999999999999999999876632     236789999999999999999999


Q ss_pred             CCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHH
Q psy2960         153 AVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQ  232 (405)
Q Consensus       153 ~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiq  232 (405)
                      ++||+|+++. ..|+|++|+.++.+.++++|+++++++++++++.+.|||+++...... +|++|+|+|++|++|+++++
T Consensus        74 ~~Gd~V~~~~-~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~~g~~~~~  151 (305)
T cd08270          74 AVGARVVGLG-AMGAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVGRFAVQ  151 (305)
T ss_pred             CCCCEEEEec-CCcceeeEEEEchHHeEECCCCCCHHHHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcHHHHHHHH
Confidence            9999999883 369999999999999999999999999999999999999999876555 69999999999999999999


Q ss_pred             HHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEE
Q psy2960         233 IARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTY  312 (405)
Q Consensus       233 la~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~  312 (405)
                      +|+.+|++++.++++.    ++.+.++++|++.+++..+     +.+ .+++|+++||+|+.....++++++++|+++.+
T Consensus       152 ~a~~~g~~v~~~~~~~----~~~~~~~~~g~~~~~~~~~-----~~~-~~~~d~vl~~~g~~~~~~~~~~l~~~G~~v~~  221 (305)
T cd08270         152 LAALAGAHVVAVVGSP----ARAEGLRELGAAEVVVGGS-----ELS-GAPVDLVVDSVGGPQLARALELLAPGGTVVSV  221 (305)
T ss_pred             HHHHcCCEEEEEeCCH----HHHHHHHHcCCcEEEeccc-----ccc-CCCceEEEECCCcHHHHHHHHHhcCCCEEEEE
Confidence            9999999999987553    3477888899876654321     112 24799999999998888899999999999999


Q ss_pred             eccCCCCcccCcccccc--cCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHHhh
Q psy2960         313 GGMSREPVQIPTSAFIF--KDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMS  390 (405)
Q Consensus       313 g~~~~~~~~~~~~~~~~--k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~  390 (405)
                      |........++...+..  ++.++.++++..       +....+.++.+.+++++|++++.+.++++++++++||+.+. 
T Consensus       222 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~~~~~-  293 (305)
T cd08270         222 GSSSGEPAVFNPAAFVGGGGGRRLYTFFLYD-------GEPLAADLARLLGLVAAGRLDPRIGWRGSWTEIDEAAEALL-  293 (305)
T ss_pred             eccCCCcccccHHHHhcccccceEEEEEccC-------HHHHHHHHHHHHHHHHCCCccceeccEEcHHHHHHHHHHHH-
Confidence            96543333344444443  689999888654       13345678889999999999987888999999999999999 


Q ss_pred             hcCCCCceEEEEe
Q psy2960         391 IQGKSGVKYYIDF  403 (405)
Q Consensus       391 ~~~~~~gKvvl~~  403 (405)
                       ++...||+|+++
T Consensus       294 -~~~~~gkvvi~~  305 (305)
T cd08270         294 -ARRFRGKAVLDV  305 (305)
T ss_pred             -cCCCCceEEEeC
Confidence             888899999875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=100.00  E-value=3.6e-40  Score=321.61  Aligned_cols=307  Identities=20%  Similarity=0.261  Sum_probs=253.2

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCC-CCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSV-QKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSS  151 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~-~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~  151 (405)
                      ||++++++++.    +++.+.|.|.| +++||+||+.+++||++|++.+.|.++. ..+|.++|||++|+|+++|+++++
T Consensus         1 m~a~~~~~~~~----~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~   75 (386)
T cd08283           1 MKALVWHGKGD----VRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPG-MKKGDILGHEFMGVVEEVGPEVRN   75 (386)
T ss_pred             CeeEEEecCCC----ceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCC-CCCCccccccceEEEEEeCCCCCC
Confidence            78999987644    88999999988 5999999999999999999999998765 356899999999999999999999


Q ss_pred             CCCCCEEEecCC----------------------------------------------CCCcccceEeeccc--ceEEcC
Q psy2960         152 LAVGDHVIPDTQ----------------------------------------------HLGTWRNYGKFNHD--VLMKVP  183 (405)
Q Consensus       152 ~~~GdrV~~~~~----------------------------------------------~~G~~a~~~~v~~~--~~~~iP  183 (405)
                      +++||+|++.+.                                              ..|+|++|+.++.+  .++++|
T Consensus        76 ~~~Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp  155 (386)
T cd08283          76 LKVGDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYSHLTGGYAGGQAEYVRVPFADVGPFKIP  155 (386)
T ss_pred             CCCCCEEEEcCcCCCCCChhhcCCCcccCCCcccccccccccccccccccccccccCCCCCeeEEEEEcccccCeEEECC
Confidence            999999987520                                              14899999999988  899999


Q ss_pred             CCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCcchHHHHHHHHHcC
Q psy2960         184 KDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLG  262 (405)
Q Consensus       184 ~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~~~~~~~~~~~~lg  262 (405)
                      +++++++|++++..++|||+++ ..+++++|++|||+|+ |++|++++++|+.+|+. ++++.++    +++.+.+++++
T Consensus       156 ~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~-G~vG~~~~~la~~~g~~~vi~~~~~----~~~~~~~~~~~  229 (386)
T cd08283         156 DDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGC-GPVGLFAARSAKLLGAERVIAIDRV----PERLEMARSHL  229 (386)
T ss_pred             CCCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCC----HHHHHHHHHcC
Confidence            9999999999999999999999 6689999999999975 99999999999999985 6666544    34577888884


Q ss_pred             CcEEeChh---hHHH-HhhhcCCCCCcEEEECCCch----------------------hHHHHHHhcccCCEEEEEeccC
Q psy2960         263 ADYVFTEE---ELRN-ISRDASIPKPKLALNCVGGN----------------------SATNLLRTLVSKGVMVTYGGMS  316 (405)
Q Consensus       263 ~~~v~~~~---d~~~-i~~~t~g~g~Dvvld~~g~~----------------------~~~~~~~~l~~~G~~v~~g~~~  316 (405)
                      ...++++.   ++.+ +.+.+.+.++|++|||+|++                      .+..++++++++|+++.+|...
T Consensus       230 ~~~vi~~~~~~~~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~~~  309 (386)
T cd08283         230 GAETINFEEVDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGVYG  309 (386)
T ss_pred             CcEEEcCCcchHHHHHHHHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcCCC
Confidence            44566643   2555 78888788899999999864                      4566889999999999998654


Q ss_pred             CCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCC--cceeeehhhHHHHHHHHhhhcCC
Q psy2960         317 REPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGK  394 (405)
Q Consensus       317 ~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~--~~~~~~~~~~~~A~~~~~~~~~~  394 (405)
                      .....++....+.+++++.+....           ..+.++++++++++|.+.+.  +++.|+++++++||+.+.  ++.
T Consensus       310 ~~~~~~~~~~~~~~~~~i~~~~~~-----------~~~~~~~~~~~l~~g~l~~~~~~~~~~~l~~~~~a~~~~~--~~~  376 (386)
T cd08283         310 GTVNKFPIGAAMNKGLTLRMGQTH-----------VQRYLPRLLELIESGELDPSFIITHRLPLEDAPEAYKIFD--KKE  376 (386)
T ss_pred             CCcCccCHHHHHhCCcEEEeccCC-----------chHHHHHHHHHHHcCCCChhHceEEEecHHHHHHHHHHHH--hCC
Confidence            323334444556788998886421           13557888899999999864  568899999999999988  665


Q ss_pred             -CCceEEEEe
Q psy2960         395 -SGVKYYIDF  403 (405)
Q Consensus       395 -~~gKvvl~~  403 (405)
                       ..+|+||++
T Consensus       377 ~~~~k~~~~~  386 (386)
T cd08283         377 DGCIKVVLKP  386 (386)
T ss_pred             CCeEEEEecC
Confidence             568999863

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=100.00  E-value=8.8e-40  Score=312.40  Aligned_cols=313  Identities=24%  Similarity=0.353  Sum_probs=261.0

Q ss_pred             ceeEEEEccCCCC-ccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCC
Q psy2960          72 LANKLVYNQHGTP-LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVS  150 (405)
Q Consensus        72 ~~~a~~~~~~g~~-~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~  150 (405)
                      .||+|++.+++.. .+.+++++.+.|.+.++|++|||.++|+|+.|++...|.++....+|.++|||++|+|+.+|++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~   80 (329)
T cd08250           1 SFRKLVVHRLSPNFREATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVT   80 (329)
T ss_pred             CceEEEeccCCCCcccCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCC
Confidence            4899999998771 256889999999999999999999999999999998887654346789999999999999999999


Q ss_pred             CCCCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHH
Q psy2960         151 SLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNV  230 (405)
Q Consensus       151 ~~~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~a  230 (405)
                      .+++||+|++..  .|+|++|+.++.+.++++|++  +.+++++++++.|||+++...+++++|++|+|+|++|++|+++
T Consensus        81 ~~~~Gd~V~~~~--~g~~~s~~~v~~~~~~~ip~~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~  156 (329)
T cd08250          81 DFKVGDAVATMS--FGAFAEYQVVPARHAVPVPEL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFA  156 (329)
T ss_pred             CCCCCCEEEEec--CcceeEEEEechHHeEECCCC--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHH
Confidence            999999999873  589999999999999999997  4578889999999999998878999999999999999999999


Q ss_pred             HHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCC
Q psy2960         231 IQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKG  307 (405)
Q Consensus       231 iqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G  307 (405)
                      +|+|+..|+++++++++.+    +.+.++++|++.+++.++  +.. +.+.. ++++|++|||+|+.....++++++++|
T Consensus       157 ~~~a~~~g~~v~~~~~~~~----~~~~~~~~g~~~v~~~~~~~~~~~~~~~~-~~~vd~v~~~~g~~~~~~~~~~l~~~g  231 (329)
T cd08250         157 VQLAKLAGCHVIGTCSSDE----KAEFLKSLGCDRPINYKTEDLGEVLKKEY-PKGVDVVYESVGGEMFDTCVDNLALKG  231 (329)
T ss_pred             HHHHHHcCCeEEEEeCcHH----HHHHHHHcCCceEEeCCCccHHHHHHHhc-CCCCeEEEECCcHHHHHHHHHHhccCC
Confidence            9999999999999886543    356678899988886543  444 55544 468999999999988888999999999


Q ss_pred             EEEEEeccCCCC----------cccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCC--ccee
Q psy2960         308 VMVTYGGMSREP----------VQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAP--AHKF  375 (405)
Q Consensus       308 ~~v~~g~~~~~~----------~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~--~~~~  375 (405)
                      +++.+|......          ..+ ....+.+++++.++.+..+..      ...+.+.++.+++.+|.+++.  +.+.
T Consensus       232 ~~v~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~  304 (329)
T cd08250         232 RLIVIGFISGYQSGTGPSPVKGATL-PPKLLAKSASVRGFFLPHYAK------LIPQHLDRLLQLYQRGKLVCEVDPTRF  304 (329)
T ss_pred             eEEEEecccCCcccCcccccccccc-cHHHhhcCceEEEEEhHHHHH------HHHHHHHHHHHHHHCCCeeeeECCccc
Confidence            999998643221          111 123466889999987654321      235668889999999998874  4567


Q ss_pred             eehhhHHHHHHHHhhhcCCCCceEEEE
Q psy2960         376 VTLKNFQEALMNTMSIQGKSGVKYYID  402 (405)
Q Consensus       376 ~~~~~~~~A~~~~~~~~~~~~gKvvl~  402 (405)
                      |+++++++||+.+.  .++..+|+|++
T Consensus       305 ~~~~~~~~a~~~~~--~~~~~~kvvv~  329 (329)
T cd08250         305 RGLESVADAVDYLY--SGKNIGKVVVE  329 (329)
T ss_pred             cCHHHHHHHHHHHH--cCCCCceEEeC
Confidence            99999999999999  78888999874

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>PRK10083 putative oxidoreductase; Provisional

Probab=100.00  E-value=7.6e-40  Score=314.23  Aligned_cols=304  Identities=18%  Similarity=0.273  Sum_probs=245.9

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||++++++++.    +.+++.|.|+|+++|++||+.++|||++|++.+.|.++. ..+|.++|||++|+|+++|++|+.+
T Consensus         1 m~a~~~~~~~~----~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v~~~   75 (339)
T PRK10083          1 MKSIVIEKPNS----LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPF-AKYPRVIGHEFFGVIDAVGEGVDAA   75 (339)
T ss_pred             CeEEEEecCCe----eEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCc-CCCCcccccceEEEEEEECCCCccC
Confidence            78999998764    889999999999999999999999999999999887654 2568999999999999999999999


Q ss_pred             CCCCEEEecC--------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHH
Q psy2960         153 AVGDHVIPDT--------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLK  206 (405)
Q Consensus       153 ~~GdrV~~~~--------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~  206 (405)
                      ++||+|+..+                          ...|+|++|+.++...++++|+++++++++ +..++.++|++. 
T Consensus        76 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~a~-~~~~~~~a~~~~-  153 (339)
T PRK10083         76 RIGERVAVDPVISCGHCYPCSIGKPNVCTSLVVLGVHRDGGFSEYAVVPAKNAHRIPDAIADQYAV-MVEPFTIAANVT-  153 (339)
T ss_pred             CCCCEEEEccccCCCCCccccCcCcccCCCCceEEEccCCcceeeEEechHHeEECcCCCCHHHHh-hhchHHHHHHHH-
Confidence            9999998421                          125899999999999999999999998876 456778888644 


Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHH-cCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCCC
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARH-WGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIP  282 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~-~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g~  282 (405)
                      ..+++++|++|+|+|+ |++|++++|+|+. +|+++++++++.   +++++.++++|+++++++++  +.+ +..  .+.
T Consensus       154 ~~~~~~~g~~vlI~g~-g~vG~~~~~~a~~~~G~~~v~~~~~~---~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~--~g~  227 (339)
T PRK10083        154 GRTGPTEQDVALIYGA-GPVGLTIVQVLKGVYNVKAVIVADRI---DERLALAKESGADWVINNAQEPLGEALEE--KGI  227 (339)
T ss_pred             HhcCCCCCCEEEEECC-CHHHHHHHHHHHHhCCCCEEEEEcCC---HHHHHHHHHhCCcEEecCccccHHHHHhc--CCC
Confidence            5589999999999995 9999999999997 699876666442   45678889999999998754  333 432  134


Q ss_pred             CCcEEEECCCc-hhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHH
Q psy2960         283 KPKLALNCVGG-NSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTE  361 (405)
Q Consensus       283 g~Dvvld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  361 (405)
                      ++|++|||+|+ .....++++++++|+++.+|.... ...++...+..+++++.+....            .+.++++++
T Consensus       228 ~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~  294 (339)
T PRK10083        228 KPTLIIDAACHPSILEEAVTLASPAARIVLMGFSSE-PSEIVQQGITGKELSIFSSRLN------------ANKFPVVID  294 (339)
T ss_pred             CCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCC-CceecHHHHhhcceEEEEEecC------------hhhHHHHHH
Confidence            56799999995 456788999999999999986432 2223333334577777765431            245788899


Q ss_pred             HHHcCcccCC--cceeeehhhHHHHHHHHhhhcC-CCCceEEEEec
Q psy2960         362 MMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQG-KSGVKYYIDFR  404 (405)
Q Consensus       362 ~~~~g~l~~~--~~~~~~~~~~~~A~~~~~~~~~-~~~gKvvl~~~  404 (405)
                      ++++|.+++.  ++++|+++++++||+.+.  ++ ...+|+|++++
T Consensus       295 ~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~--~~~~~~~kvvv~~~  338 (339)
T PRK10083        295 WLSKGLIDPEKLITHTFDFQHVADAIELFE--KDQRHCCKVLLTFA  338 (339)
T ss_pred             HHHcCCCChHHheeeeecHHHHHHHHHHHh--cCCCceEEEEEecC
Confidence            9999999873  678999999999999987  54 45699999876

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=100.00  E-value=4.2e-40  Score=315.33  Aligned_cols=305  Identities=24%  Similarity=0.345  Sum_probs=257.3

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||++++++++++   +++++.|.|++.++|++||+.++++|++|++...|.++. ..+|.++|||++|+|+++|++++.+
T Consensus         1 m~a~~~~~~~~~---~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~~g~~~~~~   76 (334)
T PRK13771          1 MKAVILPGFKQG---YRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPR-MKYPVILGHEVVGTVEEVGENVKGF   76 (334)
T ss_pred             CeeEEEcCCCCC---cEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCC-CCCCeeccccceEEEEEeCCCCccC
Confidence            789999998875   889999999999999999999999999999988887653 2567899999999999999999999


Q ss_pred             CCCCEEEecCC--------------------------CCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHH
Q psy2960         153 AVGDHVIPDTQ--------------------------HLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLK  206 (405)
Q Consensus       153 ~~GdrV~~~~~--------------------------~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~  206 (405)
                      ++||+|++...                          ..|+|++|+.++.+.++++|+++++++++.+++++.+||+++.
T Consensus        77 ~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~l~~~~~~a~~~~~  156 (334)
T PRK13771         77 KPGDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGEELDGFFAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGLR  156 (334)
T ss_pred             CCCCEEEECCCCCCcCChhhcCCCcccCccccccccccCceeeeeeecchhceEECCCCCCHHHhhcccchHHHHHHHHH
Confidence            99999998731                          1589999999999999999999999999999999999999997


Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH-HhhhcCCCCCc
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPK  285 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~D  285 (405)
                      .. .+++|++|+|+|++|++|++++|+|+.+|+++++++++.++    .+.++++ ++++++.+++.+ +.+.  + ++|
T Consensus       157 ~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~v~~~--~-~~d  227 (334)
T PRK13771        157 RA-GVKKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESK----AKIVSKY-ADYVIVGSKFSEEVKKI--G-GAD  227 (334)
T ss_pred             hc-CCCCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHHH-HHHhcCchhHHHHHHhc--C-CCc
Confidence            75 99999999999999999999999999999999888765433    4556667 777777665555 6554  2 699


Q ss_pred             EEEECCCchhHHHHHHhcccCCEEEEEeccCCCCc-ccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHH
Q psy2960         286 LALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPV-QIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMR  364 (405)
Q Consensus       286 vvld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~-~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (405)
                      +++||+|+.....++++++++|+++.+|....... .......+.+++++.+.....           .+.+++++++++
T Consensus       228 ~~ld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~  296 (334)
T PRK13771        228 IVIETVGTPTLEESLRSLNMGGKIIQIGNVDPSPTYSLRLGYIILKDIEIIGHISAT-----------KRDVEEALKLVA  296 (334)
T ss_pred             EEEEcCChHHHHHHHHHHhcCCEEEEEeccCCCCCcccCHHHHHhcccEEEEecCCC-----------HHHHHHHHHHHH
Confidence            99999999888888999999999999996433221 122333356788888864211           345788899999


Q ss_pred             cCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         365 TGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       365 ~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      +|.+++.++++|+++++++||+.+.  ++...||+++++
T Consensus       297 ~~~l~~~~~~~~~~~~~~~a~~~~~--~~~~~~kvv~~~  333 (334)
T PRK13771        297 EGKIKPVIGAEVSLSEIDKALEELK--DKSRIGKILVKP  333 (334)
T ss_pred             cCCCcceEeeeEcHHHHHHHHHHHH--cCCCcceEEEec
Confidence            9999877889999999999999999  778899999875

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=100.00  E-value=9.8e-40  Score=314.87  Aligned_cols=308  Identities=22%  Similarity=0.295  Sum_probs=255.6

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCC-----------CCCCCCCCccceEEE
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPI-----------KPTLPAVPGFEGVGE  141 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-----------~~~~p~~lG~E~~G~  141 (405)
                      ||++++..++.+   +++++.|.|++.++||+||+.++++|++|++.+.|.++.           ...+|.++|||++|+
T Consensus         1 ~~a~~~~~~~~~---~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~   77 (350)
T cd08240           1 MKAAAVVEPGKP---LEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGE   77 (350)
T ss_pred             CeeEEeccCCCC---ceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEE
Confidence            789999888765   789999999999999999999999999999998886532           224568899999999


Q ss_pred             EEEEcCCCCCCCCCCEEEecCC--------------------------CCCcccceEeecccceEEcCCCCChhhhccCC
Q psy2960         142 VVEVGSDVSSLAVGDHVIPDTQ--------------------------HLGTWRNYGKFNHDVLMKVPKDIALTEISGIT  195 (405)
Q Consensus       142 V~~vG~~v~~~~~GdrV~~~~~--------------------------~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~  195 (405)
                      |+++|++++++++||+|++++.                          ..|++++|+.++.+.++++|++++++++++++
T Consensus        78 V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~s~~~aa~l~  157 (350)
T cd08240          78 VVAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRALGIFQDGGYAEYVIVPHSRYLVDPGGLDPALAATLA  157 (350)
T ss_pred             EEeeCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCceeeeccCcceeeEEecHHHeeeCCCCCCHHHeehhh
Confidence            9999999999999999998621                          35899999999999999999999999999999


Q ss_pred             CcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCcchHHHHHHHHHcCCcEEeChhh--H
Q psy2960         196 SNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEEE--L  272 (405)
Q Consensus       196 ~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~  272 (405)
                      +.++|||+++.....+++|++|||+|+ |++|++++|+|+.+|++ ++++.++    +++++.++++|++.+++.++  +
T Consensus       158 ~~~~tA~~~~~~~~~~~~~~~vlI~g~-g~vg~~~~~~a~~~G~~~v~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~  232 (350)
T cd08240         158 CSGLTAYSAVKKLMPLVADEPVVIIGA-GGLGLMALALLKALGPANIIVVDID----EAKLEAAKAAGADVVVNGSDPDA  232 (350)
T ss_pred             chhhhHHHHHHhcccCCCCCEEEEECC-cHHHHHHHHHHHHcCCCeEEEEeCC----HHHHHHHHHhCCcEEecCCCccH
Confidence            999999999988777779999999965 99999999999999995 5555433    34567778899998887653  3


Q ss_pred             HH-HhhhcCCCCCcEEEECCCc-hhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHH
Q psy2960         273 RN-ISRDASIPKPKLALNCVGG-NSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESA  350 (405)
Q Consensus       273 ~~-i~~~t~g~g~Dvvld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~  350 (405)
                      .+ +.+.+.+ ++|++||++|. .....++++|+++|+++.+|..... ...+...+..+++++.+++...         
T Consensus       233 ~~~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~~---------  301 (350)
T cd08240         233 AKRIIKAAGG-GVDAVIDFVNNSATASLAFDILAKGGKLVLVGLFGGE-ATLPLPLLPLRALTIQGSYVGS---------  301 (350)
T ss_pred             HHHHHHHhCC-CCcEEEECCCCHHHHHHHHHHhhcCCeEEEECCCCCC-CcccHHHHhhcCcEEEEcccCC---------
Confidence            34 6666655 89999999985 5567789999999999999854432 1223333445888888876543         


Q ss_pred             HHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         351 ERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       351 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                        .+.+..+++++++|.+++.+...|+++++++||+.+.  +++..||+++++
T Consensus       302 --~~~~~~~~~ll~~~~i~~~~~~~~~~~~~~~a~~~~~--~~~~~gkvvv~~  350 (350)
T cd08240         302 --LEELRELVALAKAGKLKPIPLTERPLSDVNDALDDLK--AGKVVGRAVLKP  350 (350)
T ss_pred             --HHHHHHHHHHHHcCCCccceeeEEcHHHHHHHHHHHH--cCCccceEEecC
Confidence              2457778899999999877788999999999999999  888899999853

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.3e-39  Score=311.39  Aligned_cols=305  Identities=26%  Similarity=0.395  Sum_probs=256.6

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||++++..++++   +.+++.|.|.+.++||+|+|.++++|++|++...|.++. ...|.++|||++|+|+++|++++.+
T Consensus         1 m~a~~~~~~~~~---~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~v~~~G~~v~~~   76 (332)
T cd08259           1 MKAAILHKPNKP---LQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPR-GKYPLILGHEIVGTVEEVGEGVERF   76 (332)
T ss_pred             CeEEEEecCCCc---eEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCC-CCCCeeccccceEEEEEECCCCccC
Confidence            789999874443   888999999999999999999999999999999887664 3567899999999999999999999


Q ss_pred             CCCCEEEecCC--------------------------CCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHH
Q psy2960         153 AVGDHVIPDTQ--------------------------HLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLK  206 (405)
Q Consensus       153 ~~GdrV~~~~~--------------------------~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~  206 (405)
                      ++||+|+++..                          ..|+|++|+.++...++++|+++++++++++++++.|||+++.
T Consensus        77 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~  156 (332)
T cd08259          77 KPGDRVILYYYIPCGKCEYCLSGEENLCRNRAEYGEEVDGGFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHALK  156 (332)
T ss_pred             CCCCEEEECCCCCCcCChhhhCCCcccCCCccccccccCCeeeeEEEechhheEECCCCCCHHHHhhhccHHHHHHHHHH
Confidence            99999998741                          1589999999999999999999999999999999999999998


Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH-HhhhcCCCCCc
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPK  285 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~D  285 (405)
                      . +.+++|++|||+|++|++|++++++|+..|+++++++++.+    +.+.+.++|.+.+++.+++.+ +.+..   ++|
T Consensus       157 ~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d  228 (332)
T cd08259         157 R-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPE----KLKILKELGADYVIDGSKFSEDVKKLG---GAD  228 (332)
T ss_pred             H-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHH----HHHHHHHcCCcEEEecHHHHHHHHhcc---CCC
Confidence            7 89999999999999999999999999999999998885543    356667889888887766544 55543   799


Q ss_pred             EEEECCCchhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHc
Q psy2960         286 LALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRT  365 (405)
Q Consensus       286 vvld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (405)
                      +++||+|......++++++++|+++.+|........++......++.++.++....           .+.++++++++++
T Consensus       229 ~v~~~~g~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~  297 (332)
T cd08259         229 VVIELVGSPTIEESLRSLNKGGRLVLIGNVTPDPAPLRPGLLILKEIRIIGSISAT-----------KADVEEALKLVKE  297 (332)
T ss_pred             EEEECCChHHHHHHHHHhhcCCEEEEEcCCCCCCcCCCHHHHHhCCcEEEEecCCC-----------HHHHHHHHHHHHc
Confidence            99999999888888999999999999986543222222222334677777764211           3457788899999


Q ss_pred             CcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEE
Q psy2960         366 GKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYID  402 (405)
Q Consensus       366 g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~  402 (405)
                      |.+++.++++|+++++++||+.+.  +++..||+|++
T Consensus       298 ~~l~~~~~~~~~~~~~~~a~~~~~--~~~~~~kvv~~  332 (332)
T cd08259         298 GKIKPVIDRVVSLEDINEALEDLK--SGKVVGRIVLK  332 (332)
T ss_pred             CCCccceeEEEcHHHHHHHHHHHH--cCCcccEEEeC
Confidence            999988889999999999999999  88889999874

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=100.00  E-value=1e-39  Score=316.18  Aligned_cols=308  Identities=24%  Similarity=0.348  Sum_probs=257.3

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||||++.+++.+   +++.+.|.|+++++||+|||.++++|+.|+..+.|.++.  .+|.++|+|++|+|+++|+++..+
T Consensus         1 m~a~~~~~~~~~---~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~vG~~v~~~   75 (363)
T cd08279           1 MRAAVLHEVGKP---LEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLPA--PLPAVLGHEGAGVVEEVGPGVTGV   75 (363)
T ss_pred             CeEEEEecCCCC---ceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCCC--CCCccccccceEEEEEeCCCcccc
Confidence            799999998765   889999999999999999999999999999999887663  567899999999999999999999


Q ss_pred             CCCCEEEecC----------------------------------------------CCCCcccceEeecccceEEcCCCC
Q psy2960         153 AVGDHVIPDT----------------------------------------------QHLGTWRNYGKFNHDVLMKVPKDI  186 (405)
Q Consensus       153 ~~GdrV~~~~----------------------------------------------~~~G~~a~~~~v~~~~~~~iP~~~  186 (405)
                      ++||+|++.+                                              ...|+|++|+.++.+.++++|+++
T Consensus        76 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~  155 (363)
T cd08279          76 KPGDHVVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQLPDGTRRFTADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDI  155 (363)
T ss_pred             CCCCEEEECCCCCCCCChhhcCCCcccCcccccccccccCCCcccccccCccccccccCccceeeEEeccccEEECCCCC
Confidence            9999999842                                              135899999999999999999999


Q ss_pred             ChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCcchHHHHHHHHHcCCcE
Q psy2960         187 ALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADY  265 (405)
Q Consensus       187 s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~~~~~~~~~~~~lg~~~  265 (405)
                      ++++++.+++++.|||+++...+++++|++|||+|+ |++|++++++|+.+|++ +++++++++    +.+.++++|+++
T Consensus       156 ~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~-g~vG~a~i~lak~~G~~~Vi~~~~~~~----~~~~~~~~g~~~  230 (363)
T cd08279         156 PLDRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGC-GGVGLNAIQGARIAGASRIIAVDPVPE----KLELARRFGATH  230 (363)
T ss_pred             ChHHeehhcchhHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEEcCCHH----HHHHHHHhCCeE
Confidence            999999999999999999988889999999999965 99999999999999997 777765433    456778899999


Q ss_pred             EeChh--hHHH-HhhhcCCCCCcEEEECCCc-hhHHHHHHhcccCCEEEEEeccCC-CCcccCcccccccCeEEEEEecc
Q psy2960         266 VFTEE--ELRN-ISRDASIPKPKLALNCVGG-NSATNLLRTLVSKGVMVTYGGMSR-EPVQIPTSAFIFKDITLRGHWMT  340 (405)
Q Consensus       266 v~~~~--d~~~-i~~~t~g~g~Dvvld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~k~~~~~g~~~~  340 (405)
                      +++++  ++.. +.+.+.++++|++|||+++ .....++++++++|+++.+|.... ....++...+..++.++.++++.
T Consensus       231 vv~~~~~~~~~~l~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (363)
T cd08279         231 TVNASEDDAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKGGTAVVVGMGPPGETVSLPALELFLSEKRLQGSLYG  310 (363)
T ss_pred             EeCCCCccHHHHHHHHcCCCCCCEEEEcCCChHHHHHHHHHhhcCCeEEEEecCCCCcccccCHHHHhhcCcEEEEEEec
Confidence            98865  3444 7777777889999999995 556778999999999999985442 23344555555677787887653


Q ss_pred             hhhhhhccHHHHHHHHHHHHHHHHcCcccCC--cceeeehhhHHHHHHHHhhhcCCCCceEE
Q psy2960         341 RWQKENKESAERKSMMNELTEMMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGKSGVKYY  400 (405)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~--~~~~~~~~~~~~A~~~~~~~~~~~~gKvv  400 (405)
                      ..        ...+.+++++++++++.+++.  ++++|+++++++||+.+.  +++..+.|+
T Consensus       311 ~~--------~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~~~~  362 (363)
T cd08279         311 SA--------NPRRDIPRLLDLYRAGRLKLDELVTRRYSLDEINEAFADML--AGENARGVI  362 (363)
T ss_pred             Cc--------CcHHHHHHHHHHHHcCCCCcceeEEEEEcHHHHHHHHHHHh--cCCceeEEe
Confidence            21        124568888999999999863  678899999999999998  777665554

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=100.00  E-value=1.5e-39  Score=311.96  Aligned_cols=304  Identities=23%  Similarity=0.328  Sum_probs=250.9

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||++++++++..   ..+++.|.|.++++||+|||.++++|++|++.+.|.++.  ..|.++|||++|+|+++|++++.|
T Consensus         1 mka~~~~~~~~~---~~~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~~G~~v~~~   75 (338)
T PRK09422          1 MKAAVVNKDHTG---DVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGD--KTGRILGHEGIGIVKEVGPGVTSL   75 (338)
T ss_pred             CeEEEecCCCCC---ceEEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCC--CCCccCCcccceEEEEECCCCccC
Confidence            799999988764   237899999999999999999999999999999887653  347899999999999999999999


Q ss_pred             CCCCEEEecC---------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHH
Q psy2960         153 AVGDHVIPDT---------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRML  205 (405)
Q Consensus       153 ~~GdrV~~~~---------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al  205 (405)
                      ++||+|++.+                           ...|+|++|+.++...++++|++++++++++++.+++|||+++
T Consensus        76 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~~  155 (338)
T PRK09422         76 KVGDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAGYTVDGGMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTTYKAI  155 (338)
T ss_pred             CCCCEEEEccCCCCCCCChhhcCCCcccCCCccccCccccCcceeEEEEchHHeEeCCCCCCHHHeehhhcchhHHHHHH
Confidence            9999998621                           1158999999999999999999999999999999999999998


Q ss_pred             HhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEEeChh---hHHH-HhhhcC
Q psy2960         206 KDYNSLSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE---ELRN-ISRDAS  280 (405)
Q Consensus       206 ~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~---d~~~-i~~~t~  280 (405)
                       ..+++++|++|||+|+ |++|++++|+|+.+ |+++++++++++    +++.++++|++.+++++   ++.. +++.++
T Consensus       156 -~~~~~~~g~~vlV~g~-g~vG~~~~~la~~~~g~~v~~~~~~~~----~~~~~~~~g~~~v~~~~~~~~~~~~v~~~~~  229 (338)
T PRK09422        156 -KVSGIKPGQWIAIYGA-GGLGNLALQYAKNVFNAKVIAVDINDD----KLALAKEVGADLTINSKRVEDVAKIIQEKTG  229 (338)
T ss_pred             -HhcCCCCCCEEEEECC-cHHHHHHHHHHHHhCCCeEEEEeCChH----HHHHHHHcCCcEEecccccccHHHHHHHhcC
Confidence             5689999999999995 99999999999984 999999986654    46778899999998864   2344 666654


Q ss_pred             CCCCc-EEEECCCchhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHH
Q psy2960         281 IPKPK-LALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNEL  359 (405)
Q Consensus       281 g~g~D-vvld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  359 (405)
                        ++| +++++.+++....++++++++|+++.+|.... ...++...+..++.++.++....           .+.++.+
T Consensus       230 --~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~  295 (338)
T PRK09422        230 --GAHAAVVTAVAKAAFNQAVDAVRAGGRVVAVGLPPE-SMDLSIPRLVLDGIEVVGSLVGT-----------RQDLEEA  295 (338)
T ss_pred             --CCcEEEEeCCCHHHHHHHHHhccCCCEEEEEeeCCC-CceecHHHHhhcCcEEEEecCCC-----------HHHHHHH
Confidence              688 55666666777788999999999999985422 22334444556778887765332           2347788


Q ss_pred             HHHHHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEec
Q psy2960         360 TEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       360 ~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                      ++++++|.+.+.+ +.++++++++||+.+.  ++...||++++++
T Consensus       296 ~~l~~~g~l~~~v-~~~~~~~~~~a~~~~~--~~~~~gkvvv~~~  337 (338)
T PRK09422        296 FQFGAEGKVVPKV-QLRPLEDINDIFDEME--QGKIQGRMVIDFT  337 (338)
T ss_pred             HHHHHhCCCCccE-EEEcHHHHHHHHHHHH--cCCccceEEEecC
Confidence            8999999987654 4689999999999999  8899999999764

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=100.00  E-value=1.2e-39  Score=313.89  Aligned_cols=307  Identities=21%  Similarity=0.258  Sum_probs=252.7

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCC-CCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSV-QKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSS  151 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~-~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~  151 (405)
                      ||++++.+++.    +.+.+.|.|.| .++||+|||.++++|++|++.+.|.++. .++|.++|+|++|+|+++|+++++
T Consensus         1 ~ka~~~~~~~~----~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~~   75 (347)
T cd05278           1 MKALVYLGPGK----IGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPG-AKHGMILGHEFVGEVVEVGSDVKR   75 (347)
T ss_pred             CceEEEecCCc----eEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCC-CCCCceeccceEEEEEEECCCccc
Confidence            68999988765    78899999999 9999999999999999999999987764 366899999999999999999999


Q ss_pred             CCCCCEEEecC-----------------------------CCCCcccceEeeccc--ceEEcCCCCChhhhccCCCcHHH
Q psy2960         152 LAVGDHVIPDT-----------------------------QHLGTWRNYGKFNHD--VLMKVPKDIALTEISGITSNPCT  200 (405)
Q Consensus       152 ~~~GdrV~~~~-----------------------------~~~G~~a~~~~v~~~--~~~~iP~~~s~~~Aa~~~~~~~t  200 (405)
                      +++||+|++.+                             ...|+|++|++++.+  +++++|+++++++|++++++++|
T Consensus        76 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~~~~~~aa~l~~~~~t  155 (347)
T cd05278          76 LKPGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRIDGGQAEYVRVPYADMNLAKIPDGLPDEDALMLSDILPT  155 (347)
T ss_pred             cCCCCEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCCCeeeEEEEecchhCeEEECCCCCCHHHHhhhcchhhh
Confidence            99999999721                             125899999999997  89999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-Hh
Q psy2960         201 AYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-IS  276 (405)
Q Consensus       201 a~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~  276 (405)
                      ||+++ ...++++|++|||.|+ |++|++++|+|+.+|+ .++++.++    +.+.+.++++|++.++++++  +.+ ++
T Consensus       156 a~~~~-~~~~~~~~~~VlI~g~-g~vg~~~iqlak~~g~~~v~~~~~~----~~~~~~~~~~g~~~vi~~~~~~~~~~i~  229 (347)
T cd05278         156 GFHGA-ELAGIKPGSTVAVIGA-GPVGLCAVAGARLLGAARIIAVDSN----PERLDLAKEAGATDIINPKNGDIVEQIL  229 (347)
T ss_pred             eeehh-hhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCC----HHHHHHHHHhCCcEEEcCCcchHHHHHH
Confidence            99998 5589999999999875 9999999999999997 56666433    34467778899999987653  445 77


Q ss_pred             hhcCCCCCcEEEECCCc-hhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHH
Q psy2960         277 RDASIPKPKLALNCVGG-NSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSM  355 (405)
Q Consensus       277 ~~t~g~g~Dvvld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~  355 (405)
                      +.+++.++|++|||+|+ .....++++|+++|+++.+|..............+.+++++.+.....           .+.
T Consensus       230 ~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~  298 (347)
T cd05278         230 ELTGGRGVDCVIEAVGFEETFEQAVKVVRPGGTIANVGVYGKPDPLPLLGEWFGKNLTFKTGLVPV-----------RAR  298 (347)
T ss_pred             HHcCCCCCcEEEEccCCHHHHHHHHHHhhcCCEEEEEcCCCCCcccCccchhhhceeEEEeeccCc-----------hhH
Confidence            77777889999999998 566788999999999999985432211112223346788887754221           346


Q ss_pred             HHHHHHHHHcCcccCC--cceeeehhhHHHHHHHHhhhcCCC-CceEEEEe
Q psy2960         356 MNELTEMMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGKS-GVKYYIDF  403 (405)
Q Consensus       356 ~~~~~~~~~~g~l~~~--~~~~~~~~~~~~A~~~~~~~~~~~-~gKvvl~~  403 (405)
                      ++++.+++++|.+++.  +...|+++++++||+.+.  .++. .+|+|+++
T Consensus       299 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~~~~vv~~  347 (347)
T cd05278         299 MPELLDLIEEGKIDPSKLITHRFPLDDILKAYRLFD--NKPDGCIKVVIRP  347 (347)
T ss_pred             HHHHHHHHHcCCCChhHcEEEEecHHHHHHHHHHHh--cCCCCceEEEecC
Confidence            8888999999999864  567899999999999988  6776 78999863

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=2.1e-39  Score=310.92  Aligned_cols=304  Identities=22%  Similarity=0.347  Sum_probs=253.5

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||++++++++.    +.+.+.|.|++.++||+|||.++++|+.|+....|.++.. .+|.++|+|++|+|+.+|++++.+
T Consensus         1 ~~a~~~~~~~~----~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~-~~~~~~g~e~~G~V~~~G~~v~~~   75 (337)
T cd08261           1 MKALVCEKPGR----LEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFA-SYPRILGHELSGEVVEVGEGVAGL   75 (337)
T ss_pred             CeEEEEeCCCc----eEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCcC-CCCcccccccEEEEEEeCCCCCCC
Confidence            68999988754    8899999999999999999999999999999998876653 457899999999999999999999


Q ss_pred             CCCCEEEecC--------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHH
Q psy2960         153 AVGDHVIPDT--------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLK  206 (405)
Q Consensus       153 ~~GdrV~~~~--------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~  206 (405)
                      ++||+|++.+                          ...|+|++|+.++++ ++++|+++++++|+++ ..++++++++ 
T Consensus        76 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~-~~~~p~~~~~~~aa~~-~~~~~a~~~~-  152 (337)
T cd08261          76 KVGDRVVVDPYISCGECYACRKGRPNCCENLQVLGVHRDGGFAEYIVVPAD-ALLVPEGLSLDQAALV-EPLAIGAHAV-  152 (337)
T ss_pred             CCCCEEEECCCCCCCCChhhhCcCcccCCCCCeeeecCCCcceeEEEechh-eEECCCCCCHHHhhhh-chHHHHHHHH-
Confidence            9999999731                          125899999999999 9999999999999887 5788899888 


Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCCCC
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIPK  283 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g~g  283 (405)
                      ...++++|++|||+|+ |++|++++|+|+.+|+++++++++.+    +.+.++++|+++++++++  +.+ +.+.+.+.+
T Consensus       153 ~~~~l~~g~~vLI~g~-g~vG~~a~~lA~~~g~~v~~~~~s~~----~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~~~~  227 (337)
T cd08261         153 RRAGVTAGDTVLVVGA-GPIGLGVIQVAKARGARVIVVDIDDE----RLEFARELGADDTINVGDEDVAARLRELTDGEG  227 (337)
T ss_pred             HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEECCCHH----HHHHHHHhCCCEEecCcccCHHHHHHHHhCCCC
Confidence            6689999999999975 89999999999999999999876533    456778899999998654  445 777777788


Q ss_pred             CcEEEECCCc-hhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHH
Q psy2960         284 PKLALNCVGG-NSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEM  362 (405)
Q Consensus       284 ~Dvvld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (405)
                      +|+++||+|+ .....++++++++|+++.+|... ....++...+..+++++.+....           ..+.++++.++
T Consensus       228 vd~vld~~g~~~~~~~~~~~l~~~G~~i~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l  295 (337)
T cd08261         228 ADVVIDATGNPASMEEAVELVAHGGRVVLVGLSK-GPVTFPDPEFHKKELTILGSRNA-----------TREDFPDVIDL  295 (337)
T ss_pred             CCEEEECCCCHHHHHHHHHHHhcCCEEEEEcCCC-CCCccCHHHHHhCCCEEEEeccC-----------ChhhHHHHHHH
Confidence            9999999986 45667899999999999998543 22233333445577777765311           13457788899


Q ss_pred             HHcCcccC--CcceeeehhhHHHHHHHHhhhcC-CCCceEEEEe
Q psy2960         363 MRTGKLAA--PAHKFVTLKNFQEALMNTMSIQG-KSGVKYYIDF  403 (405)
Q Consensus       363 ~~~g~l~~--~~~~~~~~~~~~~A~~~~~~~~~-~~~gKvvl~~  403 (405)
                      +++|.+++  .+..+|+++++.+|++.+.  ++ ...+|+|+++
T Consensus       296 ~~~~~i~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~~k~v~~~  337 (337)
T cd08261         296 LESGKVDPEALITHRFPFEDVPEAFDLWE--APPGGVIKVLIEF  337 (337)
T ss_pred             HHcCCCChhhheEEEeeHHHHHHHHHHHh--cCCCceEEEEEeC
Confidence            99999997  6778999999999999998  77 4889999875

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=100.00  E-value=4.3e-39  Score=306.97  Aligned_cols=315  Identities=20%  Similarity=0.277  Sum_probs=258.6

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||+++++++|++ +.+++++.|.|+|+++||+||+.++++|++|.....|.++..+.+|.++|||++|+|++  ++++++
T Consensus         1 ~~a~~~~~~~~~-~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~   77 (324)
T cd08288           1 FKALVLEKDDGG-TSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRF   77 (324)
T ss_pred             CeeEEEeccCCC-cceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCC
Confidence            789999998876 55899999999999999999999999999999998887643334678899999999998  778889


Q ss_pred             CCCCEEEecC-----CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHh--hcCCC-CCCEEEEeCCCc
Q psy2960         153 AVGDHVIPDT-----QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKD--YNSLS-PGDVVIQNGANS  224 (405)
Q Consensus       153 ~~GdrV~~~~-----~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~--~~~~~-~g~~VLI~ga~G  224 (405)
                      ++||+|+++.     ...|+|++|+.++.+.++++|+++++++++.++++++|+++++..  ..+.. +|++|||+|++|
T Consensus        78 ~~Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g  157 (324)
T cd08288          78 KPGDRVVLTGWGVGERHWGGYAQRARVKADWLVPLPEGLSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAG  157 (324)
T ss_pred             CCCCEEEECCccCCCCCCCcceeEEEEchHHeeeCCCCCCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCc
Confidence            9999999863     125899999999999999999999999999999999999877641  13455 678999999999


Q ss_pred             HHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH-HhhhcCCCCCcEEEECCCchhHHHHHHhc
Q psy2960         225 ACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCVGGNSATNLLRTL  303 (405)
Q Consensus       225 ~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l  303 (405)
                      ++|++++|+|+++|+++++++++.+    +.+.++++|+++++++++... +...+.+ ++|.++|++++......+.++
T Consensus       158 ~vg~~~~~~A~~~G~~vi~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~  232 (324)
T cd08288         158 GVGSVAVALLARLGYEVVASTGRPE----EADYLRSLGASEIIDRAELSEPGRPLQKE-RWAGAVDTVGGHTLANVLAQT  232 (324)
T ss_pred             HHHHHHHHHHHHCCCeEEEEeCCHH----HHHHHHhcCCCEEEEcchhhHhhhhhccC-cccEEEECCcHHHHHHHHHHh
Confidence            9999999999999999999886543    467778999999998876555 5555433 589999999987677788899


Q ss_pred             ccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHH
Q psy2960         304 VSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQE  383 (405)
Q Consensus       304 ~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~  383 (405)
                      +.+|+++.+|.....+...+...++.+++++.+++......     +...+.++.+.+++.++.+.+ +.+.|+++++++
T Consensus       233 ~~~g~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~  306 (324)
T cd08288         233 RYGGAVAACGLAGGADLPTTVMPFILRGVTLLGIDSVMAPI-----ERRRAAWARLARDLDPALLEA-LTREIPLADVPD  306 (324)
T ss_pred             cCCCEEEEEEecCCCCCCcchhhhhccccEEEEEEeecccc-----hhhHHHHHHHHHHHhcCCccc-cceeecHHHHHH
Confidence            99999999996532222333344447899999986443211     223567788888999998876 578999999999


Q ss_pred             HHHHHhhhcCCCCceEEEEe
Q psy2960         384 ALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       384 A~~~~~~~~~~~~gKvvl~~  403 (405)
                      ||+.+.  +++..+|+|+++
T Consensus       307 a~~~~~--~~~~~~~vvv~~  324 (324)
T cd08288         307 AAEAIL--AGQVRGRVVVDV  324 (324)
T ss_pred             HHHHHh--cCCccCeEEEeC
Confidence            999999  899999999874

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=1.7e-39  Score=311.49  Aligned_cols=302  Identities=20%  Similarity=0.300  Sum_probs=253.1

Q ss_pred             eEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCCC
Q psy2960          74 NKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLA  153 (405)
Q Consensus        74 ~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~  153 (405)
                      |+|+++..+.-   +++.+.|.|+|.++||+||+.++++|++|++.+.|.++. ..+|.++|||++|+|+++|+++++|+
T Consensus         1 ~~~~~~~~~~~---~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~V~~vG~~v~~~~   76 (337)
T cd05283           1 KGYAARDASGK---LEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGP-TKYPLVPGHEIVGIVVAVGSKVTKFK   76 (337)
T ss_pred             CceEEecCCCC---ceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcCC-CCCCcccCcceeeEEEEECCCCcccC
Confidence            46777777643   899999999999999999999999999999999887643 35689999999999999999999999


Q ss_pred             CCCEEEec----------------------------------CCCCCcccceEeecccceEEcCCCCChhhhccCCCcHH
Q psy2960         154 VGDHVIPD----------------------------------TQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPC  199 (405)
Q Consensus       154 ~GdrV~~~----------------------------------~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~  199 (405)
                      +||+|+..                                  ....|+|++|+.++.+.++++|+++++++++.+++.+.
T Consensus        77 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~l~~~~~  156 (337)
T cd05283          77 VGDRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGI  156 (337)
T ss_pred             CCCEEEEecCCCCCCCCccccCCchhcCcchhhcccccccCCCcCCCcceeEEEechhheEECCCCCCHHHhhhhhhHHH
Confidence            99999731                                  02358999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhc
Q psy2960         200 TAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDA  279 (405)
Q Consensus       200 ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t  279 (405)
                      |||+++.. .++++|++|+|.|+ |++|++++++|+.+|+++++++++++    +.+.++++|++.+++.++....... 
T Consensus       157 ta~~~~~~-~~~~~g~~vlV~g~-g~vG~~~~~~a~~~G~~v~~~~~~~~----~~~~~~~~g~~~vi~~~~~~~~~~~-  229 (337)
T cd05283         157 TVYSPLKR-NGVGPGKRVGVVGI-GGLGHLAVKFAKALGAEVTAFSRSPS----KKEDALKLGADEFIATKDPEAMKKA-  229 (337)
T ss_pred             HHHHHHHh-cCCCCCCEEEEECC-cHHHHHHHHHHHHcCCeEEEEcCCHH----HHHHHHHcCCcEEecCcchhhhhhc-
Confidence            99999877 46999999999875 99999999999999999888875543    4677788999999876542222221 


Q ss_pred             CCCCCcEEEECCCchh-HHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHH
Q psy2960         280 SIPKPKLALNCVGGNS-ATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNE  358 (405)
Q Consensus       280 ~g~g~Dvvld~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~  358 (405)
                       +.++|+++||+|+.. ...++++++++|+++.+|..... ..++...++.+++++.+++...           .+.++.
T Consensus       230 -~~~~d~v~~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~~-----------~~~~~~  296 (337)
T cd05283         230 -AGSLDLIIDTVSASHDLDPYLSLLKPGGTLVLVGAPEEP-LPVPPFPLIFGRKSVAGSLIGG-----------RKETQE  296 (337)
T ss_pred             -cCCceEEEECCCCcchHHHHHHHhcCCCEEEEEeccCCC-CccCHHHHhcCceEEEEecccC-----------HHHHHH
Confidence             467999999999875 67889999999999999965432 2445555567999999987653           245777


Q ss_pred             HHHHHHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEE
Q psy2960         359 LTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYID  402 (405)
Q Consensus       359 ~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~  402 (405)
                      +++++++|++++. .++|+++++++||+.+.  ++++.||+|++
T Consensus       297 ~~~~~~~~~l~~~-~~~~~~~~~~~a~~~~~--~~~~~~k~v~~  337 (337)
T cd05283         297 MLDFAAEHGIKPW-VEVIPMDGINEALERLE--KGDVRYRFVLD  337 (337)
T ss_pred             HHHHHHhCCCccc-eEEEEHHHHHHHHHHHH--cCCCcceEeeC
Confidence            8899999999875 57899999999999999  89999999975

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=2.6e-39  Score=311.89  Aligned_cols=304  Identities=22%  Similarity=0.325  Sum_probs=249.6

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCC--------CCCCCCCCccceEEEEEE
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPI--------KPTLPAVPGFEGVGEVVE  144 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--------~~~~p~~lG~E~~G~V~~  144 (405)
                      ||+++++++++    +++++.|.|++.++||+||+.++|||++|++.+.|....        ...+|.++|||++|+|++
T Consensus         1 mka~~~~~~~~----~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~   76 (350)
T cd08256           1 MRAVVCHGPQD----YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVE   76 (350)
T ss_pred             CeeEEEecCCc----eEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEE
Confidence            78999988765    889999999999999999999999999999998885311        014578999999999999


Q ss_pred             EcCCCC--CCCCCCEEEecC----------------------------CCCCcccceEeeccc-ceEEcCCCCChhhhcc
Q psy2960         145 VGSDVS--SLAVGDHVIPDT----------------------------QHLGTWRNYGKFNHD-VLMKVPKDIALTEISG  193 (405)
Q Consensus       145 vG~~v~--~~~~GdrV~~~~----------------------------~~~G~~a~~~~v~~~-~~~~iP~~~s~~~Aa~  193 (405)
                      +|++++  +|++||+|++.+                            ...|+|++|+.++++ .++++|+++++++|++
T Consensus        77 vG~~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~lP~~~~~~~aa~  156 (350)
T cd08256          77 LGEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGMAEYMRFPKEAIVHKVPDDIPPEDAIL  156 (350)
T ss_pred             eCCCcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccceeeccCCCCcceeeEEcccccceEECCCCCCHHHHhh
Confidence            999999  999999999721                            135899999999988 5789999999999998


Q ss_pred             CCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChh--h
Q psy2960         194 ITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--E  271 (405)
Q Consensus       194 ~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~--d  271 (405)
                      + .++.|+|+++ ..+++++|++|+|.|+ |++|++++|+|+++|+.++.++++.   +.+.+.+.++|++++++++  +
T Consensus       157 ~-~~~~ta~~a~-~~~~~~~g~~vlI~g~-g~vG~~~~~~a~~~G~~~v~~~~~~---~~~~~~~~~~g~~~v~~~~~~~  230 (350)
T cd08256         157 I-EPLACALHAV-DRANIKFDDVVVLAGA-GPLGLGMIGAARLKNPKKLIVLDLK---DERLALARKFGADVVLNPPEVD  230 (350)
T ss_pred             h-hHHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEEcCC---HHHHHHHHHcCCcEEecCCCcC
Confidence            8 8999999998 6689999999999555 9999999999999999877666443   3456788899999998764  3


Q ss_pred             HHH-HhhhcCCCCCcEEEECCCc-hhHHHHHHhcccCCEEEEEeccCCCCcccCcccc-cccCeEEEEEecchhhhhhcc
Q psy2960         272 LRN-ISRDASIPKPKLALNCVGG-NSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAF-IFKDITLRGHWMTRWQKENKE  348 (405)
Q Consensus       272 ~~~-i~~~t~g~g~Dvvld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~-~~k~~~~~g~~~~~~~~~~~~  348 (405)
                      +.. +.+.+++.++|++|||+|+ .....++++++++|+++.+|.... ...++...+ ..+++++.+++...       
T Consensus       231 ~~~~~~~~~~~~~vdvvld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~i~~~~~~~-------  302 (350)
T cd08256         231 VVEKIKELTGGYGCDIYIEATGHPSAVEQGLNMIRKLGRFVEFSVFGD-PVTVDWSIIGDRKELDVLGSHLGP-------  302 (350)
T ss_pred             HHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEccCCC-CCccChhHhhcccccEEEEeccCc-------
Confidence            555 7778888899999999996 456678999999999999985432 222333222 24677787766432       


Q ss_pred             HHHHHHHHHHHHHHHHcCcccCC--cceeeehhhHHHHHHHHhhhcCCCCceEEE
Q psy2960         349 SAERKSMMNELTEMMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGKSGVKYYI  401 (405)
Q Consensus       349 ~~~~~~~~~~~~~~~~~g~l~~~--~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl  401 (405)
                           ..+.++++++++|.+++.  ++++|+++++++||+.++  +++..+|+|+
T Consensus       303 -----~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~--~~~~~~kvv~  350 (350)
T cd08256         303 -----YCYPIAIDLIASGRLPTDGIVTHQFPLEDFEEAFELMA--RGDDSIKVVL  350 (350)
T ss_pred             -----hhHHHHHHHHHcCCCChhHheEEEeEHHHHHHHHHHHH--hCCCceEEeC
Confidence                 246778899999999874  678999999999999999  8888899885

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=2.4e-39  Score=311.55  Aligned_cols=307  Identities=24%  Similarity=0.353  Sum_probs=258.8

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||+|++.+++.+   +.+.+.|.|.+.++||+||+.++++|++|+....|..+. ..+|.++|+|++|+|+.+|++++.+
T Consensus         1 m~a~~~~~~~~~---~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~~G~~~~~~   76 (345)
T cd08260           1 MRAAVYEEFGEP---LEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPD-VTLPHVPGHEFAGVVVEVGEDVSRW   76 (345)
T ss_pred             CeeEEEecCCCC---cEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCC-CCCCeeeccceeEEEEEECCCCccC
Confidence            799999988875   888999999999999999999999999999999887654 3568899999999999999999999


Q ss_pred             CCCCEEEec--------------------------CCCCCcccceEeeccc--ceEEcCCCCChhhhccCCCcHHHHHHH
Q psy2960         153 AVGDHVIPD--------------------------TQHLGTWRNYGKFNHD--VLMKVPKDIALTEISGITSNPCTAYRM  204 (405)
Q Consensus       153 ~~GdrV~~~--------------------------~~~~G~~a~~~~v~~~--~~~~iP~~~s~~~Aa~~~~~~~ta~~a  204 (405)
                      ++||+|++.                          ....|+|++|+.++..  .++++|+++++++++.++.+++|||++
T Consensus        77 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~  156 (345)
T cd08260          77 RVGDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQPGFTHPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRA  156 (345)
T ss_pred             CCCCEEEECCCCCCCCCccccCcCcccCCCCcccccCCCCcceeEEEcccccCceEECCCCCCHHHhhhhccchHHHHHH
Confidence            999999871                          0125899999999985  899999999999999999999999999


Q ss_pred             HHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh---HHH-HhhhcC
Q psy2960         205 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE---LRN-ISRDAS  280 (405)
Q Consensus       205 l~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d---~~~-i~~~t~  280 (405)
                      +...+++.+|++|+|+| +|++|++++|+|+.+|+++++++++.++    .+.++++|++.++++++   +.. +.+.+.
T Consensus       157 l~~~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~~~~~----~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~  231 (345)
T cd08260         157 LVHQARVKPGEWVAVHG-CGGVGLSAVMIASALGARVIAVDIDDDK----LELARELGAVATVNASEVEDVAAAVRDLTG  231 (345)
T ss_pred             HHHccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeCCHHH----HHHHHHhCCCEEEccccchhHHHHHHHHhC
Confidence            98778999999999999 5999999999999999999999866443    56667899999997653   444 666766


Q ss_pred             CCCCcEEEECCCc-hhHHHHHHhcccCCEEEEEeccCCCC--cccCcccccccCeEEEEEecchhhhhhccHHHHHHHHH
Q psy2960         281 IPKPKLALNCVGG-NSATNLLRTLVSKGVMVTYGGMSREP--VQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMN  357 (405)
Q Consensus       281 g~g~Dvvld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~--~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~  357 (405)
                      + ++|++|||+|+ .....++++++++|+++.+|......  ..++...++.+++++.++....           .+.++
T Consensus       232 ~-~~d~vi~~~g~~~~~~~~~~~l~~~g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~  299 (345)
T cd08260         232 G-GAHVSVDALGIPETCRNSVASLRKRGRHVQVGLTLGEEAGVALPMDRVVARELEIVGSHGMP-----------AHRYD  299 (345)
T ss_pred             C-CCCEEEEcCCCHHHHHHHHHHhhcCCEEEEeCCcCCCCCccccCHHHHhhcccEEEeCCcCC-----------HHHHH
Confidence            6 89999999985 55667899999999999998654332  2344444557888888876422           34577


Q ss_pred             HHHHHHHcCcccCC--cceeeehhhHHHHHHHHhhhcCCCCceEEEE
Q psy2960         358 ELTEMMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGKSGVKYYID  402 (405)
Q Consensus       358 ~~~~~~~~g~l~~~--~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~  402 (405)
                      +++++++++.+.+.  +++.|+++++++||+.+.  +++..||+|++
T Consensus       300 ~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~~~v~~  344 (345)
T cd08260         300 AMLALIASGKLDPEPLVGRTISLDEAPDALAAMD--DYATAGITVIT  344 (345)
T ss_pred             HHHHHHHcCCCChhhheeEEecHHHHHHHHHHHH--cCCCCceEEec
Confidence            88899999998864  578999999999999999  88999999875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=4.1e-39  Score=308.26  Aligned_cols=312  Identities=21%  Similarity=0.287  Sum_probs=266.9

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||||+++..+.+ +.+++++.+.|.++++|++|++.++++|++|++...|.++..+..|.++|||++|+|+++|+++.++
T Consensus         1 ~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~   79 (336)
T cd08276           1 MKAWRLSGGGGL-DNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRF   79 (336)
T ss_pred             CeEEEEeccCCC-cceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCC
Confidence            799999977543 3488888888889999999999999999999999988776544578899999999999999999999


Q ss_pred             CCCCEEEecCC--------------------CCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCC
Q psy2960         153 AVGDHVIPDTQ--------------------HLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLS  212 (405)
Q Consensus       153 ~~GdrV~~~~~--------------------~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~  212 (405)
                      ++||+|++...                    ..|+|++|+.++.+.++++|+++++.+++.+++++++||+++...+.++
T Consensus        80 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~~a~~~l~~~~~~~  159 (336)
T cd08276          80 KVGDRVVPTFFPNWLDGPPTAEDEASALGGPIDGVLAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLTAWNALFGLGPLK  159 (336)
T ss_pred             CCCCEEEEecccccccccccccccccccccccCceeeeEEEecHHHeEECCCCCCHHHhhhhhHHHHHHHHHHHhhcCCC
Confidence            99999998631                    1588999999999999999999999999999999999999998888999


Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh---HHH-HhhhcCCCCCcEEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE---LRN-ISRDASIPKPKLAL  288 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d---~~~-i~~~t~g~g~Dvvl  288 (405)
                      +|++|+|+| +|++|++++++|++.|++++++++++    ++.+.+.++|.+++++.++   +.. +.+.+++.++|+++
T Consensus       160 ~g~~vli~g-~g~~g~~~~~~a~~~G~~v~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  234 (336)
T cd08276         160 PGDTVLVQG-TGGVSLFALQFAKAAGARVIATSSSD----EKLERAKALGADHVINYRTTPDWGEEVLKLTGGRGVDHVV  234 (336)
T ss_pred             CCCEEEEEC-CcHHHHHHHHHHHHcCCEEEEEeCCH----HHHHHHHHcCCCEEEcCCcccCHHHHHHHHcCCCCCcEEE
Confidence            999999996 59999999999999999998887553    3466677789999987643   455 78888888999999


Q ss_pred             ECCCchhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcc
Q psy2960         289 NCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL  368 (405)
Q Consensus       289 d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l  368 (405)
                      ||+++.....++++++++|+++.+|.........+...++.+++++.++....           .+.++++.++++++.+
T Consensus       235 ~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~l  303 (336)
T cd08276         235 EVGGPGTLAQSIKAVAPGGVISLIGFLSGFEAPVLLLPLLTKGATLRGIAVGS-----------RAQFEAMNRAIEAHRI  303 (336)
T ss_pred             ECCChHHHHHHHHhhcCCCEEEEEccCCCCccCcCHHHHhhcceEEEEEecCc-----------HHHHHHHHHHHHcCCc
Confidence            99998888889999999999999996544333344556678999999987643           3457778889999998


Q ss_pred             cCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         369 AAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       369 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      .+.+++.|++++++++|+.+.  ++...+|+++++
T Consensus       304 ~~~~~~~~~~~~~~~a~~~~~--~~~~~~kvv~~~  336 (336)
T cd08276         304 RPVIDRVFPFEEAKEAYRYLE--SGSHFGKVVIRV  336 (336)
T ss_pred             ccccCcEEeHHHHHHHHHHHH--hCCCCceEEEeC
Confidence            877788999999999999998  788899999864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=100.00  E-value=3e-39  Score=313.63  Aligned_cols=309  Identities=19%  Similarity=0.291  Sum_probs=248.7

Q ss_pred             ceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCC
Q psy2960          72 LANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSS  151 (405)
Q Consensus        72 ~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~  151 (405)
                      +||+.++..++++   +++++.|.|++.++||+|||.++|||++|++.+.|.++.  .+|.++|||++|+|+++|++++.
T Consensus         7 ~~~a~~~~~~~~~---~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~~--~~p~v~G~e~~G~V~~vG~~v~~   81 (373)
T cd08299           7 KCKAAVLWEPKKP---FSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLVT--PFPVILGHEAAGIVESVGEGVTT   81 (373)
T ss_pred             eeEEEEEecCCCC---cEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCCC--CCCccccccceEEEEEeCCCCcc
Confidence            4889988887665   888999999999999999999999999999999987642  56899999999999999999999


Q ss_pred             CCCCCEEEecCC-----------------------------------------------CCCcccceEeecccceEEcCC
Q psy2960         152 LAVGDHVIPDTQ-----------------------------------------------HLGTWRNYGKFNHDVLMKVPK  184 (405)
Q Consensus       152 ~~~GdrV~~~~~-----------------------------------------------~~G~~a~~~~v~~~~~~~iP~  184 (405)
                      +++||+|++.+.                                               ..|+|+||+.++...++++|+
T Consensus        82 ~~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~e~~~v~~~~~~~lP~  161 (373)
T cd08299          82 VKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFTCKGKPIHHFLGTSTFSEYTVVDEIAVAKIDA  161 (373)
T ss_pred             CCCCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccccCCcccccccCCCcccceEEecccceeeCCC
Confidence            999999987520                                               248999999999999999999


Q ss_pred             CCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHcCC
Q psy2960         185 DIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGA  263 (405)
Q Consensus       185 ~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~lg~  263 (405)
                      ++++++++++++++.|||+++...+++++|++|||+|+ |++|++++++|+.+|+ +++++.++    +++++.++++|+
T Consensus       162 ~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~-g~vG~~~~~~a~~~G~~~Vi~~~~~----~~~~~~a~~lGa  236 (373)
T cd08299         162 AAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGL-GGVGLSAIMGCKAAGASRIIAVDIN----KDKFAKAKELGA  236 (373)
T ss_pred             CCChHHhheeccchHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC----HHHHHHHHHcCC
Confidence            99999999999999999999888789999999999975 9999999999999999 67777544    345788899999


Q ss_pred             cEEeChhh----HHH-HhhhcCCCCCcEEEECCCc-hhHHHHHHh-cccCCEEEEEeccCCC-CcccCcccccccCeEEE
Q psy2960         264 DYVFTEEE----LRN-ISRDASIPKPKLALNCVGG-NSATNLLRT-LVSKGVMVTYGGMSRE-PVQIPTSAFIFKDITLR  335 (405)
Q Consensus       264 ~~v~~~~d----~~~-i~~~t~g~g~Dvvld~~g~-~~~~~~~~~-l~~~G~~v~~g~~~~~-~~~~~~~~~~~k~~~~~  335 (405)
                      +++++..+    +.. +.+.+. +++|+++||+|+ ..+..++.. ++++|+++.+|..... ...++.. .+.++.++.
T Consensus       237 ~~~i~~~~~~~~~~~~v~~~~~-~~~d~vld~~g~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i~  314 (373)
T cd08299         237 TECINPQDYKKPIQEVLTEMTD-GGVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGVPPSSQNLSINPM-LLLTGRTWK  314 (373)
T ss_pred             ceEecccccchhHHHHHHHHhC-CCCeEEEECCCCcHHHHHHHHhhccCCCEEEEEccCCCCceeecCHH-HHhcCCeEE
Confidence            99998643    444 667766 589999999996 444565655 4679999999965332 2223322 234678899


Q ss_pred             EEecchhhhhhccHHHHHHHHHHHHHHHHcCccc--CCcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         336 GHWMTRWQKENKESAERKSMMNELTEMMRTGKLA--APAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       336 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~--~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      +++...+..        .+.+.++++.+.++.++  +.++++|+++++++||+.+.  +++ ..|+++++
T Consensus       315 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~a~~~~~--~~~-~~k~~~~~  373 (373)
T cd08299         315 GAVFGGWKS--------KDSVPKLVADYMAKKFNLDPLITHTLPFEKINEGFDLLR--SGK-SIRTVLTF  373 (373)
T ss_pred             EEEecCCcc--------HHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHh--CCC-cceEEEeC
Confidence            887655321        23344566666666544  44678999999999999988  555 45888764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=100.00  E-value=1.6e-39  Score=312.05  Aligned_cols=310  Identities=27%  Similarity=0.334  Sum_probs=252.9

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||+++++.+| + ..+++++.|.|+|+++||+||+.++++|++|+....+.++  ..+|.++|||++|+|+.+|++++.+
T Consensus         1 m~a~~~~~~~-~-~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~--~~~~~~~g~e~~G~v~~vG~~v~~~   76 (339)
T cd08249           1 QKAAVLTGPG-G-GLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGFI--PSYPAILGCDFAGTVVEVGSGVTRF   76 (339)
T ss_pred             CceEEeccCC-C-CcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeecccc--cCCCceeeeeeeEEEEEeCCCcCcC
Confidence            7899999886 3 3488999999999999999999999999999988766541  1357899999999999999999999


Q ss_pred             CCCCEEEecCC-------CCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCC----------CCCC
Q psy2960         153 AVGDHVIPDTQ-------HLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSL----------SPGD  215 (405)
Q Consensus       153 ~~GdrV~~~~~-------~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~----------~~g~  215 (405)
                      ++||+|+++..       .+|+|++|+.++.+.++++|+++++++++.+++++.|||+++....++          ++|+
T Consensus        77 ~~Gd~V~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~  156 (339)
T cd08249          77 KVGDRVAGFVHGGNPNDPRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGK  156 (339)
T ss_pred             CCCCEEEEEeccccCCCCCCCcccceEEechhheEECCCCCCHHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCC
Confidence            99999998742       248999999999999999999999999999999999999998766544          7999


Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCCCCCcEEEECCC
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIPKPKLALNCVG  292 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g  292 (405)
                      +|||+|++|++|++++++|+.+|++++++++ .+    +.+.++++|+++++++++  +.+ +++.++ +++|++||++|
T Consensus       157 ~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~~-~~----~~~~~~~~g~~~v~~~~~~~~~~~l~~~~~-~~~d~vl~~~g  230 (339)
T cd08249         157 PVLIWGGSSSVGTLAIQLAKLAGYKVITTAS-PK----NFDLVKSLGADAVFDYHDPDVVEDIRAATG-GKLRYALDCIS  230 (339)
T ss_pred             EEEEEcChhHHHHHHHHHHHHcCCeEEEEEC-cc----cHHHHHhcCCCEEEECCCchHHHHHHHhcC-CCeeEEEEeec
Confidence            9999999999999999999999999998873 33    356778899999988653  445 766664 67999999999


Q ss_pred             c-hhHHHHHHhccc--CCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhh---hhccHHHHHHHHHHHHHHHHcC
Q psy2960         293 G-NSATNLLRTLVS--KGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQK---ENKESAERKSMMNELTEMMRTG  366 (405)
Q Consensus       293 ~-~~~~~~~~~l~~--~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g  366 (405)
                      + .....+++++++  +|+++.+|......       ....+.++.......+..   ..  +......++++.++++++
T Consensus       231 ~~~~~~~~~~~l~~~~~g~~v~~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  301 (339)
T cd08249         231 TPESAQLCAEALGRSGGGKLVSLLPVPEET-------EPRKGVKVKFVLGYTVFGEIPED--REFGEVFWKYLPELLEEG  301 (339)
T ss_pred             cchHHHHHHHHHhccCCCEEEEecCCCccc-------cCCCCceEEEEEeeeeccccccc--ccchHHHHHHHHHHHHcC
Confidence            8 777889999999  99999998554322       111233333333322211   11  123345688899999999


Q ss_pred             cccCCcceeee--hhhHHHHHHHHhhhcCC-CCceEEEEe
Q psy2960         367 KLAAPAHKFVT--LKNFQEALMNTMSIQGK-SGVKYYIDF  403 (405)
Q Consensus       367 ~l~~~~~~~~~--~~~~~~A~~~~~~~~~~-~~gKvvl~~  403 (405)
                      .+.+.+...++  ++++++||+.+.  .++ ..+|+|+++
T Consensus       302 ~l~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~~kvvv~~  339 (339)
T cd08249         302 KLKPHPVRVVEGGLEGVQEGLDLLR--KGKVSGEKLVVRL  339 (339)
T ss_pred             CccCCCceecCCcHHHHHHHHHHHH--CCCccceEEEEeC
Confidence            99987777788  999999999999  788 899999874

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=100.00  E-value=4.3e-39  Score=305.92  Aligned_cols=308  Identities=22%  Similarity=0.313  Sum_probs=255.2

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||++++...+.+ ..+++.+.+.|.++++||+||+.++++|+.|++...|.++. ...|.++|||++|+|+++|.  ..+
T Consensus         1 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~vG~--~~~   76 (320)
T cd08243           1 MKAIVIEQPGGP-EVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPS-VKFPRVLGIEAVGEVEEAPG--GTF   76 (320)
T ss_pred             CeEEEEcCCCCc-cceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC-CCCCccccceeEEEEEEecC--CCC
Confidence            688899877654 34778888888899999999999999999999998886543 35678999999999999995  579


Q ss_pred             CCCCEEEecCC-----CCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHH
Q psy2960         153 AVGDHVIPDTQ-----HLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACG  227 (405)
Q Consensus       153 ~~GdrV~~~~~-----~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG  227 (405)
                      ++||+|+++..     ..|+|++|+.++...++++|+++++++++++++++.|||+++...+.+++|++|||+|++|++|
T Consensus        77 ~~Gd~V~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g  156 (320)
T cd08243          77 TPGQRVATAMGGMGRTFDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVG  156 (320)
T ss_pred             CCCCEEEEecCCCCCCCCcccceEEEcCHHHcEeCCCCCCHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHH
Confidence            99999998742     2489999999999999999999999999999999999999998888899999999999999999


Q ss_pred             HHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeCh-hhHHH-HhhhcCCCCCcEEEECCCchhHHHHHHhccc
Q psy2960         228 QNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE-EELRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVS  305 (405)
Q Consensus       228 ~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~-~d~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~  305 (405)
                      ++++|+|+++|+++++++++++    +.+.++++|++++++. .++.+ +.+.  ++++|+++||+|+.....+++++++
T Consensus       157 ~~~~~~a~~~g~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~i~~~--~~~~d~vl~~~~~~~~~~~~~~l~~  230 (320)
T cd08243         157 LAALKLAKALGATVTATTRSPE----RAALLKELGADEVVIDDGAIAEQLRAA--PGGFDKVLELVGTATLKDSLRHLRP  230 (320)
T ss_pred             HHHHHHHHHcCCEEEEEeCCHH----HHHHHHhcCCcEEEecCccHHHHHHHh--CCCceEEEECCChHHHHHHHHHhcc
Confidence            9999999999999999886643    4677788999888753 23444 6666  6789999999999888889999999


Q ss_pred             CCEEEEEeccCCCCc--ccCcccc--cccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhH
Q psy2960         306 KGVMVTYGGMSREPV--QIPTSAF--IFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNF  381 (405)
Q Consensus       306 ~G~~v~~g~~~~~~~--~~~~~~~--~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~  381 (405)
                      +|+++.+|.......  .......  +.+++++.++.....         ....++.+.++++++.+++.+++.|+++++
T Consensus       231 ~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  301 (320)
T cd08243         231 GGIVCMTGLLGGQWTLEDFNPMDDIPSGVNLTLTGSSSGDV---------PQTPLQELFDFVAAGHLDIPPSKVFTFDEI  301 (320)
T ss_pred             CCEEEEEccCCCCcccCCcchhhhhhhccceEEEecchhhh---------hHHHHHHHHHHHHCCceecccccEEcHHHH
Confidence            999999986432211  1111111  257788877764321         134678888999999999878889999999


Q ss_pred             HHHHHHHhhhcCCCCceEEE
Q psy2960         382 QEALMNTMSIQGKSGVKYYI  401 (405)
Q Consensus       382 ~~A~~~~~~~~~~~~gKvvl  401 (405)
                      ++|++.+.  +++..+|+|+
T Consensus       302 ~~a~~~~~--~~~~~~kvvv  319 (320)
T cd08243         302 VEAHAYME--SNRAFGKVVV  319 (320)
T ss_pred             HHHHHHHH--hCCCCCcEEe
Confidence            99999998  8888999886

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=100.00  E-value=3.2e-39  Score=312.83  Aligned_cols=307  Identities=21%  Similarity=0.322  Sum_probs=253.1

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      +|++++.+.+.+   +++++.|.|.++++||+||+.++++|++|++.+.|.++.  .+|.++|||++|+|+++|++++.+
T Consensus         1 ~~a~~~~~~~~~---~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~~--~~~~i~g~e~~G~V~~vG~~v~~~   75 (365)
T cd05279           1 CKAAVLWEKGKP---LSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLPT--PLPVILGHEGAGIVESIGPGVTTL   75 (365)
T ss_pred             CceeEEecCCCC---cEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCCC--CCCcccccceeEEEEEeCCCcccC
Confidence            367788877665   889999999999999999999999999999999887653  467899999999999999999999


Q ss_pred             CCCCEEEecCC-----------------------------------------------CCCcccceEeecccceEEcCCC
Q psy2960         153 AVGDHVIPDTQ-----------------------------------------------HLGTWRNYGKFNHDVLMKVPKD  185 (405)
Q Consensus       153 ~~GdrV~~~~~-----------------------------------------------~~G~~a~~~~v~~~~~~~iP~~  185 (405)
                      ++||+|++.+.                                               ..|+|++|+.++.+.++++|++
T Consensus        76 ~~Gd~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~  155 (365)
T cd05279          76 KPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHHFLGTSTFAEYTVVSEISLAKIDPD  155 (365)
T ss_pred             CCCCEEEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceeeccCCccccccccccccceEEecCCceEECCCC
Confidence            99999987521                                               1378999999999999999999


Q ss_pred             CChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE
Q psy2960         186 IALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY  265 (405)
Q Consensus       186 ~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~  265 (405)
                      +++++|+++++++.+||+++...+++++|++|||+|+ |++|++++|+|+.+|+++++++.+   .+++.+.++++|+++
T Consensus       156 ~~~~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~-g~vG~~a~~~a~~~G~~~v~~~~~---~~~~~~~~~~~g~~~  231 (365)
T cd05279         156 APLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGL-GGVGLSVIMGCKAAGASRIIAVDI---NKDKFEKAKQLGATE  231 (365)
T ss_pred             CCHHHhhHhccchhHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHHHHhCCCe
Confidence            9999999999999999999888889999999999975 999999999999999986555532   234577888999999


Q ss_pred             EeChh----hHHH-HhhhcCCCCCcEEEECCCc-hhHHHHHHhcc-cCCEEEEEeccC-CCCcccCcccccccCeEEEEE
Q psy2960         266 VFTEE----ELRN-ISRDASIPKPKLALNCVGG-NSATNLLRTLV-SKGVMVTYGGMS-REPVQIPTSAFIFKDITLRGH  337 (405)
Q Consensus       266 v~~~~----d~~~-i~~~t~g~g~Dvvld~~g~-~~~~~~~~~l~-~~G~~v~~g~~~-~~~~~~~~~~~~~k~~~~~g~  337 (405)
                      +++.+    ++.+ +.+.++ .++|++||++|. .....++++++ ++|+++.+|... .....++...+ .++.++.|.
T Consensus       232 ~v~~~~~~~~~~~~l~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~l~g~  309 (365)
T cd05279         232 CINPRDQDKPIVEVLTEMTD-GGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPPSGTEATLDPNDL-LTGRTIKGT  309 (365)
T ss_pred             ecccccccchHHHHHHHHhC-CCCcEEEECCCCHHHHHHHHHHhccCCCEEEEEecCCCCCceeeCHHHH-hcCCeEEEE
Confidence            98764    3334 677774 689999999986 56677899999 999999998543 22334444455 677888887


Q ss_pred             ecchhhhhhccHHHHHHHHHHHHHHHHcCcccC--CcceeeehhhHHHHHHHHhhhcCCCCceEEE
Q psy2960         338 WMTRWQKENKESAERKSMMNELTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYI  401 (405)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl  401 (405)
                      +...+.        ..+.+.+++++++++.+++  .++++|+++++++||+.+.  +++. .|+++
T Consensus       310 ~~~~~~--------~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~--~~~~-~~~~~  364 (365)
T cd05279         310 VFGGWK--------SKDSVPKLVALYRQKKFPLDELITHVLPFEEINDGFDLMR--SGES-IRTIL  364 (365)
T ss_pred             eccCCc--------hHhHHHHHHHHHHcCCcchhHheeeeecHHHHHHHHHHHh--CCCc-eeeee
Confidence            665432        2455788889999999885  3778999999999999988  6655 47665

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=100.00  E-value=8.7e-39  Score=306.39  Aligned_cols=319  Identities=19%  Similarity=0.283  Sum_probs=262.1

Q ss_pred             eeEEEEccCCCCcc--ceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCC
Q psy2960          73 ANKLVYNQHGTPLR--VVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVS  150 (405)
Q Consensus        73 ~~a~~~~~~g~~~~--~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~  150 (405)
                      ||++++++++++.+  .+.+++.|.|++.++||+||+.++++|++|++.+.|.++. ..+|.++|||++|+|+++|+++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~~G~~v~   79 (336)
T cd08252           1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPV-PGQPKILGWDASGVVEAVGSEVT   79 (336)
T ss_pred             CceEEecCCCCCCcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCC-CCCCcccccceEEEEEEcCCCCC
Confidence            68999999887631  4777788989999999999999999999999998887652 34678999999999999999999


Q ss_pred             CCCCCCEEEecC--CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCC-----CCEEEEeCCC
Q psy2960         151 SLAVGDHVIPDT--QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSP-----GDVVIQNGAN  223 (405)
Q Consensus       151 ~~~~GdrV~~~~--~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~-----g~~VLI~ga~  223 (405)
                      .|++||+|++..  ...|+|++|+.++...++++|+++++++++.+++++.|||+++...+.+++     |++|+|+|++
T Consensus        80 ~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~  159 (336)
T cd08252          80 LFKVGDEVYYAGDITRPGSNAEYQLVDERIVGHKPKSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGA  159 (336)
T ss_pred             CCCCCCEEEEcCCCCCCccceEEEEEchHHeeeCCCCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCC
Confidence            999999999873  246899999999999999999999999999999999999999888788887     9999999999


Q ss_pred             cHHHHHHHHHHHHcC-CcEEEEecCCcchHHHHHHHHHcCCcEEeChh-hHHH-HhhhcCCCCCcEEEECCCc-hhHHHH
Q psy2960         224 SACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGADYVFTEE-ELRN-ISRDASIPKPKLALNCVGG-NSATNL  299 (405)
Q Consensus       224 G~vG~~aiqla~~~G-~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~-d~~~-i~~~t~g~g~Dvvld~~g~-~~~~~~  299 (405)
                      |++|++++|+|+.+| +++++++++.+    +.+.++++|++++++.+ ++.. +... .++++|++|||+|+ .....+
T Consensus       160 g~vg~~~~~~a~~~G~~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~i~~~-~~~~~d~vl~~~~~~~~~~~~  234 (336)
T cd08252         160 GGVGSIAIQLAKQLTGLTVIATASRPE----SIAWVKELGADHVINHHQDLAEQLEAL-GIEPVDYIFCLTDTDQHWDAM  234 (336)
T ss_pred             chHHHHHHHHHHHcCCcEEEEEcCChh----hHHHHHhcCCcEEEeCCccHHHHHHhh-CCCCCCEEEEccCcHHHHHHH
Confidence            999999999999999 99999876543    36777889999999865 3444 5543 34689999999996 566778


Q ss_pred             HHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhh-hhhccHHHHHHHHHHHHHHHHcCcccCCcc---ee
Q psy2960         300 LRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQ-KENKESAERKSMMNELTEMMRTGKLAAPAH---KF  375 (405)
Q Consensus       300 ~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~---~~  375 (405)
                      +++++++|+++.+|...   ..++...++.+++++.+.++.... ...+.+....+.++++.+++.+|.+++.+.   ..
T Consensus       235 ~~~l~~~g~~v~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  311 (336)
T cd08252         235 AELIAPQGHICLIVDPQ---EPLDLGPLKSKSASFHWEFMFTRSMFQTPDMIEQHEILNEVADLLDAGKLKTTLTETLGP  311 (336)
T ss_pred             HHHhcCCCEEEEecCCC---CcccchhhhcccceEEEEEeeccccccccchhhHHHHHHHHHHHHHCCCEecceeeeecC
Confidence            99999999999998542   234444444688999887654311 111112344577899999999999997543   34


Q ss_pred             eehhhHHHHHHHHhhhcCCCCceEEEE
Q psy2960         376 VTLKNFQEALMNTMSIQGKSGVKYYID  402 (405)
Q Consensus       376 ~~~~~~~~A~~~~~~~~~~~~gKvvl~  402 (405)
                      ++++++++||+.+.  ++...+|++++
T Consensus       312 ~~~~~~~~a~~~~~--~~~~~~~vv~~  336 (336)
T cd08252         312 INAENLREAHALLE--SGKTIGKIVLE  336 (336)
T ss_pred             CCHHHHHHHHHHHH--cCCccceEEeC
Confidence            79999999999999  88889999874

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=100.00  E-value=7.3e-39  Score=307.89  Aligned_cols=304  Identities=23%  Similarity=0.356  Sum_probs=250.9

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||+|++++++.    +.+++.|.|++.+++|+|||.++++|+.|+.++.|.++ ....|.++|+|++|+|+++|++++.+
T Consensus         1 ~~~~~~~~~~~----~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~-~~~~~~~~g~~~~G~V~~~G~~v~~~   75 (343)
T cd08235           1 MKAAVLHGPND----VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHT-DLKPPRILGHEIAGEIVEVGDGVTGF   75 (343)
T ss_pred             CeEEEEecCCc----eEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCc-cCCCCcccccceEEEEEeeCCCCCCC
Confidence            68999988764    88999999999999999999999999999999888664 23457899999999999999999999


Q ss_pred             CCCCEEEecCC--------------------------CCCcccceEeecccc-----eEEcCCCCChhhhccCCCcHHHH
Q psy2960         153 AVGDHVIPDTQ--------------------------HLGTWRNYGKFNHDV-----LMKVPKDIALTEISGITSNPCTA  201 (405)
Q Consensus       153 ~~GdrV~~~~~--------------------------~~G~~a~~~~v~~~~-----~~~iP~~~s~~~Aa~~~~~~~ta  201 (405)
                      ++||+|++.+.                          ..|+|++|+.++...     ++++|+++++++|+.+ ..+.+|
T Consensus        76 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~~a  154 (343)
T cd08235          76 KVGDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGNLYDGGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAALV-EPLACC  154 (343)
T ss_pred             CCCCEEEEccCCCCCCChHHHCcCcccCCCcceeccCCCCcceeeEEecccccccccEEECCCCCCHHHHHhh-hHHHHH
Confidence            99999998621                          358999999999998     9999999999999876 788999


Q ss_pred             HHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-Hhh
Q psy2960         202 YRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISR  277 (405)
Q Consensus       202 ~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~  277 (405)
                      |+++.. .++++|++|||+|+ |++|++++|+|+..|++ +++++++.+    +.+.++++|.++++++++  +.+ +.+
T Consensus       155 ~~~l~~-~~~~~g~~VlV~g~-g~vg~~~~~la~~~g~~~v~~~~~s~~----~~~~~~~~g~~~~~~~~~~~~~~~i~~  228 (343)
T cd08235         155 INAQRK-AGIKPGDTVLVIGA-GPIGLLHAMLAKASGARKVIVSDLNEF----RLEFAKKLGADYTIDAAEEDLVEKVRE  228 (343)
T ss_pred             HHHHHh-cCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCHH----HHHHHHHhCCcEEecCCccCHHHHHHH
Confidence            999965 58999999999974 99999999999999999 777765543    355667889999988654  444 777


Q ss_pred             hcCCCCCcEEEECCCch-hHHHHHHhcccCCEEEEEeccCCC-CcccCcccccccCeEEEEEecchhhhhhccHHHHHHH
Q psy2960         278 DASIPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSRE-PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSM  355 (405)
Q Consensus       278 ~t~g~g~Dvvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~  355 (405)
                      .+.+.++|+++||+++. ....++++++++|+++.+|..... ...++......+++++.+++...           .+.
T Consensus       229 ~~~~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~  297 (343)
T cd08235         229 LTDGRGADVVIVATGSPEAQAQALELVRKGGRILFFGGLPKGSTVNIDPNLIHYREITITGSYAAS-----------PED  297 (343)
T ss_pred             HhCCcCCCEEEECCCChHHHHHHHHHhhcCCEEEEEeccCCCCCcccCHHHHhhCceEEEEEecCC-----------hhh
Confidence            77788899999999965 667789999999999999864332 12333344556778877765332           234


Q ss_pred             HHHHHHHHHcCcccC--CcceeeehhhHHHHHHHHhhhcCCCCceEEEE
Q psy2960         356 MNELTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYID  402 (405)
Q Consensus       356 ~~~~~~~~~~g~l~~--~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~  402 (405)
                      ++.++++++++.+++  .+..+|+++++.+|++.+.  +++ .+|+|++
T Consensus       298 ~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~a~~~~~--~~~-~~k~vi~  343 (343)
T cd08235         298 YKEALELIASGKIDVKDLITHRFPLEDIEEAFELAA--DGK-SLKIVIT  343 (343)
T ss_pred             HHHHHHHHHcCCCChHHheeeEeeHHHHHHHHHHHh--CCC-cEEEEeC
Confidence            677889999999874  3667899999999999999  888 9999974

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=8.5e-39  Score=307.19  Aligned_cols=305  Identities=20%  Similarity=0.286  Sum_probs=246.3

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCC----------CCCCCCCCCccceEEEE
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYP----------IKPTLPAVPGFEGVGEV  142 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~----------~~~~~p~~lG~E~~G~V  142 (405)
                      ||++++.++  +   +++++.|.|+++++||+|||.++++|+.|++...|...          ....+|.++|+|++|+|
T Consensus         1 m~a~~~~~~--~---~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V   75 (341)
T cd08262           1 MRAAVFRDG--P---LVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEV   75 (341)
T ss_pred             CceEEEeCC--c---eEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEE
Confidence            688998765  2   88999999999999999999999999999999887321          11235789999999999


Q ss_pred             EEEcCCCCC-CCCCCEEEecCC----------------CCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHH
Q psy2960         143 VEVGSDVSS-LAVGDHVIPDTQ----------------HLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRML  205 (405)
Q Consensus       143 ~~vG~~v~~-~~~GdrV~~~~~----------------~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al  205 (405)
                      +++|+++++ |++||+|++.+.                ..|+|++|+.++.+.++++|+++++++++ ++.++++||+++
T Consensus        76 ~~vG~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~s~~~a~-~~~~~~~a~~~~  154 (341)
T cd08262          76 VDYGPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSPEAPGGYAEYMLLSEALLLRVPDGLSMEDAA-LTEPLAVGLHAV  154 (341)
T ss_pred             EEeCCCCcCCCCCCCEEEecCCcCCCCChhhhCCCCcCCCCceeeeEEechHHeEECCCCCCHHHhh-hhhhHHHHHHHH
Confidence            999999997 999999998731                35899999999999999999999999887 667889999996


Q ss_pred             HhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhH------HHHhhhc
Q psy2960         206 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEEL------RNISRDA  279 (405)
Q Consensus       206 ~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~------~~i~~~t  279 (405)
                       ..+++++|++|||+|+ |++|++++|+|+.+|+++++++++.   +++.+.++++|+++++++++.      ..+.+.+
T Consensus       155 -~~~~~~~g~~VlI~g~-g~vg~~~~~la~~~G~~~v~~~~~~---~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~  229 (341)
T cd08262         155 -RRARLTPGEVALVIGC-GPIGLAVIAALKARGVGPIVASDFS---PERRALALAMGADIVVDPAADSPFAAWAAELARA  229 (341)
T ss_pred             -HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCC---HHHHHHHHHcCCcEEEcCCCcCHHHHHHHHHHHh
Confidence             6689999999999976 9999999999999999977776443   455778889999989885421      1234455


Q ss_pred             CCCCCcEEEECCCch-hHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHH
Q psy2960         280 SIPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNE  358 (405)
Q Consensus       280 ~g~g~Dvvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~  358 (405)
                      .+.++|++|||+|+. ....++++++++|+++.+|...... .........+++++.++....           .+.+.+
T Consensus       230 ~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~  297 (341)
T cd08262         230 GGPKPAVIFECVGAPGLIQQIIEGAPPGGRIVVVGVCMESD-NIEPALAIRKELTLQFSLGYT-----------PEEFAD  297 (341)
T ss_pred             CCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCCC-ccCHHHHhhcceEEEEEeccc-----------HHHHHH
Confidence            667899999999984 5677899999999999998543221 122222234777777654321           235778


Q ss_pred             HHHHHHcCcccCC--cceeeehhhHHHHHHHHhhhcCCCCceEEEE
Q psy2960         359 LTEMMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGKSGVKYYID  402 (405)
Q Consensus       359 ~~~~~~~g~l~~~--~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~  402 (405)
                      +++++++|.+.+.  ++++|+++++++||+.+.  +++..||+|++
T Consensus       298 ~~~l~~~g~i~~~~~i~~~~~l~~~~~a~~~~~--~~~~~~kvvv~  341 (341)
T cd08262         298 ALDALAEGKVDVAPMVTGTVGLDGVPDAFEALR--DPEHHCKILVD  341 (341)
T ss_pred             HHHHHHcCCCChHHheEEEeeHHHHHHHHHHHh--cCCCceEEEeC
Confidence            8899999999864  478999999999999999  88899999974

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=100.00  E-value=9e-39  Score=303.31  Aligned_cols=320  Identities=23%  Similarity=0.344  Sum_probs=267.9

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||++++.+++.+ ..+++.+.+.|.+.++|++||+.++++|+.|++...|.++....+|.++|||++|+|+++|+++..+
T Consensus         1 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~   79 (323)
T cd05276           1 MKAIVIKEPGGP-EVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGW   79 (323)
T ss_pred             CeEEEEecCCCc-ccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCC
Confidence            799999987765 4477888888888999999999999999999999888765444568899999999999999999999


Q ss_pred             CCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHH
Q psy2960         153 AVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQ  232 (405)
Q Consensus       153 ~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiq  232 (405)
                      ++||+|+++. ..|+|++|+.++.+.++++|++++++++++++.++.++|+++...+.+.+|++|+|+|++|++|+++++
T Consensus        80 ~~Gd~V~~~~-~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~  158 (323)
T cd05276          80 KVGDRVCALL-AGGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQ  158 (323)
T ss_pred             CCCCEEEEec-CCCceeEEEEcCHHHhccCCCCCCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHH
Confidence            9999999883 358999999999999999999999999999999999999999887899999999999999999999999


Q ss_pred             HHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEE
Q psy2960         233 IARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVM  309 (405)
Q Consensus       233 la~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~  309 (405)
                      +++..|++++.+.++.    .+.+.++++|++.+++...  +.. +.+.+.+.++|+++|+.|+.....++++++++|++
T Consensus       159 ~~~~~g~~v~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~~~~g~~  234 (323)
T cd05276         159 LAKALGARVIATAGSE----EKLEACRALGADVAINYRTEDFAEEVKEATGGRGVDVILDMVGGDYLARNLRALAPDGRL  234 (323)
T ss_pred             HHHHcCCEEEEEcCCH----HHHHHHHHcCCCEEEeCCchhHHHHHHHHhCCCCeEEEEECCchHHHHHHHHhhccCCEE
Confidence            9999999988887553    3466677889888887543  444 66677677899999999998888889999999999


Q ss_pred             EEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHHh
Q psy2960         310 VTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTM  389 (405)
Q Consensus       310 v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~  389 (405)
                      +.+|.........+...++.+++++.++........ ..+....+.+.++.+++.++.+++.+++.|+++++++|++.+.
T Consensus       235 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  313 (323)
T cd05276         235 VLIGLLGGAKAELDLAPLLRKRLTLTGSTLRSRSLE-EKAALAAAFREHVWPLFASGRIRPVIDKVFPLEEAAEAHRRME  313 (323)
T ss_pred             EEEecCCCCCCCCchHHHHHhCCeEEEeeccchhhh-ccHHHHHHHHHHHHHHHHCCCccCCcceEEcHHHHHHHHHHHH
Confidence            999865433333444445568999999876543111 1124455677888899999999887889999999999999998


Q ss_pred             hhcCCCCceEEE
Q psy2960         390 SIQGKSGVKYYI  401 (405)
Q Consensus       390 ~~~~~~~gKvvl  401 (405)
                        ++...+|+++
T Consensus       314 --~~~~~~kvv~  323 (323)
T cd05276         314 --SNEHIGKIVL  323 (323)
T ss_pred             --hCCCcceEeC
Confidence              7777889874

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=100.00  E-value=1.4e-38  Score=306.27  Aligned_cols=306  Identities=23%  Similarity=0.314  Sum_probs=252.5

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCC-CCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSV-QKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSS  151 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~-~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~  151 (405)
                      ||++++++++.    +++++.|.|+| .++||+|||.++++|++|+..+.|.++.. .+|.++|||++|+|+++|++++.
T Consensus         1 m~a~~~~~~~~----~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~~-~~~~~~g~e~~G~V~~~G~~v~~   75 (345)
T cd08286           1 MKALVYHGPGK----ISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTV-TPGRILGHEGVGVVEEVGSAVTN   75 (345)
T ss_pred             CceEEEecCCc----eeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCCC-CCCceecccceEEEEEeccCccc
Confidence            78999998775    88999999986 89999999999999999999999876542 45889999999999999999999


Q ss_pred             CCCCCEEEecCC---------------------------CCCcccceEeeccc--ceEEcCCCCChhhhccCCCcHHHHH
Q psy2960         152 LAVGDHVIPDTQ---------------------------HLGTWRNYGKFNHD--VLMKVPKDIALTEISGITSNPCTAY  202 (405)
Q Consensus       152 ~~~GdrV~~~~~---------------------------~~G~~a~~~~v~~~--~~~~iP~~~s~~~Aa~~~~~~~ta~  202 (405)
                      +++||+|++.+.                           ..|+|++|+.++.+  .++++|+++++++++.++++++|||
T Consensus        76 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~  155 (345)
T cd08286          76 FKVGDRVLISCISSCGTCGYCRKGLYSHCESGGWILGNLIDGTQAEYVRIPHADNSLYKLPEGVDEEAAVMLSDILPTGY  155 (345)
T ss_pred             cCCCCEEEECCcCCCCCChHHHCcCcccCCCcccccccccCCeeeeEEEcccccCceEECCCCCCHHHhhhccchhHHHH
Confidence            999999987531                           13889999999987  8999999999999999999999999


Q ss_pred             HHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcC-CcEEEEecCCcchHHHHHHHHHcCCcEEeChh--hHHH-Hhhh
Q psy2960         203 RMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRD  278 (405)
Q Consensus       203 ~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G-~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~--d~~~-i~~~  278 (405)
                      +++...+++++|++|||.|+ |++|++++|+|+.+| .+++++. +.   +.+.+.++++|++.+++++  ++.. +.+.
T Consensus       156 ~~~~~~~~~~~g~~vlI~g~-g~~g~~~~~~a~~~G~~~v~~~~-~~---~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~  230 (345)
T cd08286         156 ECGVLNGKVKPGDTVAIVGA-GPVGLAALLTAQLYSPSKIIMVD-LD---DNRLEVAKKLGATHTVNSAKGDAIEQVLEL  230 (345)
T ss_pred             HHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEc-CC---HHHHHHHHHhCCCceeccccccHHHHHHHH
Confidence            98777789999999999886 999999999999999 5666643 32   3456778899999999865  3444 7777


Q ss_pred             cCCCCCcEEEECCCch-hHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHH
Q psy2960         279 ASIPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMN  357 (405)
Q Consensus       279 t~g~g~Dvvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~  357 (405)
                      +.+.++|++|||+|+. ....++++++++|+++.+|.... ...++...++.+++++.+....            .+.++
T Consensus       231 ~~~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~------------~~~~~  297 (345)
T cd08286         231 TDGRGVDVVIEAVGIPATFELCQELVAPGGHIANVGVHGK-PVDLHLEKLWIKNITITTGLVD------------TNTTP  297 (345)
T ss_pred             hCCCCCCEEEECCCCHHHHHHHHHhccCCcEEEEecccCC-CCCcCHHHHhhcCcEEEeecCc------------hhhHH
Confidence            7778899999999864 44567899999999999985332 3344555556789999875432            13467


Q ss_pred             HHHHHHHcCcccCC--cceeeehhhHHHHHHHHhhhcCC--CCceEEEEe
Q psy2960         358 ELTEMMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGK--SGVKYYIDF  403 (405)
Q Consensus       358 ~~~~~~~~g~l~~~--~~~~~~~~~~~~A~~~~~~~~~~--~~gKvvl~~  403 (405)
                      ++.+++++|.+++.  ++++|+++++++||+.+.  ...  ...|+||++
T Consensus       298 ~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~--~~~~~~~~k~~~~~  345 (345)
T cd08286         298 MLLKLVSSGKLDPSKLVTHRFKLSEIEKAYDTFS--AAAKHKALKVIIDF  345 (345)
T ss_pred             HHHHHHHcCCCChHHcEEeEeeHHHHHHHHHHHh--ccCCCCeeEEEEeC
Confidence            78889999998764  578999999999999988  553  456999874

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=100.00  E-value=2e-38  Score=301.45  Aligned_cols=318  Identities=25%  Similarity=0.362  Sum_probs=268.3

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||+++++.++.+ ..+.+.+.|.|.+.+++|+|++.++++|++|+....|.++.....|.++|||++|+|+++|+++++|
T Consensus         1 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~   79 (325)
T cd08253           1 MRAIRYHEFGAP-DVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGL   79 (325)
T ss_pred             CceEEEcccCCc-ccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCC
Confidence            688888887654 4478889999999999999999999999999998888665444678899999999999999999999


Q ss_pred             CCCCEEEecCC----CCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHH
Q psy2960         153 AVGDHVIPDTQ----HLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQ  228 (405)
Q Consensus       153 ~~GdrV~~~~~----~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~  228 (405)
                      ++||+|++...    ..|++++|+.++.+.++++|+++++++++++++++.+||+++...+++++|++|+|+|++|++|+
T Consensus        80 ~~Gd~v~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~  159 (325)
T cd08253          80 KVGDRVWLTNLGWGRRQGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGH  159 (325)
T ss_pred             CCCCEEEEeccccCCCCcceeeEEEecHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHH
Confidence            99999998742    25899999999999999999999999999999999999999988889999999999999999999


Q ss_pred             HHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhccc
Q psy2960         229 NVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVS  305 (405)
Q Consensus       229 ~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~  305 (405)
                      +++++++..|+++++++++.    ++.+.++++|++++++..+  +.. +.+.+.+.++|+++||.|+......++++++
T Consensus       160 ~~~~~a~~~g~~v~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~  235 (325)
T cd08253         160 AAVQLARWAGARVIATASSA----EGAELVRQAGADAVFNYRAEDLADRILAATAGQGVDVIIEVLANVNLAKDLDVLAP  235 (325)
T ss_pred             HHHHHHHHcCCEEEEEeCCH----HHHHHHHHcCCCEEEeCCCcCHHHHHHHHcCCCceEEEEECCchHHHHHHHHhhCC
Confidence            99999999999999887654    3456677889988887543  444 6677777789999999999888888999999


Q ss_pred             CCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHH
Q psy2960         306 KGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEAL  385 (405)
Q Consensus       306 ~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~  385 (405)
                      +|+++.+|... ....++...++.++.++.+......     .+....+.++.+.+++.++.+++.++.+|+++++++++
T Consensus       236 ~g~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  309 (325)
T cd08253         236 GGRIVVYGSGG-LRGTIPINPLMAKEASIRGVLLYTA-----TPEERAAAAEAIAAGLADGALRPVIAREYPLEEAAAAH  309 (325)
T ss_pred             CCEEEEEeecC-CcCCCChhHHHhcCceEEeeehhhc-----CHHHHHHHHHHHHHHHHCCCccCccccEEcHHHHHHHH
Confidence            99999998644 2233444444567888877764321     12455667888889999999988888999999999999


Q ss_pred             HHHhhhcCCCCceEEEEe
Q psy2960         386 MNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       386 ~~~~~~~~~~~gKvvl~~  403 (405)
                      +.+.  ++...||+++++
T Consensus       310 ~~~~--~~~~~~kvv~~~  325 (325)
T cd08253         310 EAVE--SGGAIGKVVLDP  325 (325)
T ss_pred             HHHH--cCCCcceEEEeC
Confidence            9999  788899999864

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=100.00  E-value=3.5e-38  Score=298.84  Aligned_cols=317  Identities=23%  Similarity=0.293  Sum_probs=264.6

Q ss_pred             eEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCCC
Q psy2960          74 NKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLA  153 (405)
Q Consensus        74 ~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~  153 (405)
                      +|+.+..++.+ ..+.+.+.+.|.+.++||+|+|.++++|++|++...|.++.  .+|.++|||++|+|+.+|+++++++
T Consensus         1 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~--~~~~~~g~e~~G~v~~~g~~~~~~~   77 (320)
T cd05286           1 KAVRIHKTGGP-EVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL--PLPFVLGVEGAGVVEAVGPGVTGFK   77 (320)
T ss_pred             CeEEEecCCCc-cceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC--CCCccCCcceeEEEEEECCCCCCCC
Confidence            35666655544 34677788877889999999999999999999998887653  4578999999999999999999999


Q ss_pred             CCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHH
Q psy2960         154 VGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQI  233 (405)
Q Consensus       154 ~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiql  233 (405)
                      +||+|+++. ..|+|++|+.++.+.++++|+++++++++.+++.++++|+++...+++++|++|||+|++|++|++++++
T Consensus        78 ~G~~V~~~~-~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~  156 (320)
T cd05286          78 VGDRVAYAG-PPGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQW  156 (320)
T ss_pred             CCCEEEEec-CCCceeEEEEecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHH
Confidence            999999873 2589999999999999999999999999999999999999998888999999999999999999999999


Q ss_pred             HHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEE
Q psy2960         234 ARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMV  310 (405)
Q Consensus       234 a~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v  310 (405)
                      |+.+|++++++++++    ++.+.++++|++++++.++  +.. +.+.+.+.++|+++||+++.....++++++++|+++
T Consensus       157 a~~~g~~v~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~~~~~~~~~~~~l~~~g~~v  232 (320)
T cd05286         157 AKALGATVIGTVSSE----EKAELARAAGADHVINYRDEDFVERVREITGGRGVDVVYDGVGKDTFEGSLDSLRPRGTLV  232 (320)
T ss_pred             HHHcCCEEEEEcCCH----HHHHHHHHCCCCEEEeCCchhHHHHHHHHcCCCCeeEEEECCCcHhHHHHHHhhccCcEEE
Confidence            999999999987553    3467778899999887653  444 777777889999999999987788899999999999


Q ss_pred             EEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHHhh
Q psy2960         311 TYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMS  390 (405)
Q Consensus       311 ~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~  390 (405)
                      .+|........++...+..+++++.+.....+.   ..+....+.+.++.+++.++.+.+.+++.|+++++++||+.+. 
T Consensus       233 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~~~~-  308 (320)
T cd05286         233 SFGNASGPVPPFDLLRLSKGSLFLTRPSLFHYI---ATREELLARAAELFDAVASGKLKVEIGKRYPLADAAQAHRDLE-  308 (320)
T ss_pred             EEecCCCCCCccCHHHHHhcCcEEEEEehhhhc---CCHHHHHHHHHHHHHHHHCCCCcCcccceEcHHHHHHHHHHHH-
Confidence            998644322223333333688888876654433   1235566778889999999999887888999999999999999 


Q ss_pred             hcCCCCceEEEEe
Q psy2960         391 IQGKSGVKYYIDF  403 (405)
Q Consensus       391 ~~~~~~gKvvl~~  403 (405)
                       .+...+|+|+++
T Consensus       309 -~~~~~~~vv~~~  320 (320)
T cd05286         309 -SRKTTGKLLLIP  320 (320)
T ss_pred             -cCCCCceEEEeC
Confidence             788899999864

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=2.5e-38  Score=303.24  Aligned_cols=313  Identities=24%  Similarity=0.340  Sum_probs=262.7

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||++++...+.+ ..+++.+.+.|.+.+++|+|++.++++|++|++...|..+....+|.++|||++|+|+.+|++++.+
T Consensus         1 ~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~   79 (342)
T cd08266           1 MKAVVIRGHGGP-EVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNV   79 (342)
T ss_pred             CeEEEEecCCCc-cceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCC
Confidence            688998865544 3478888888889999999999999999999999988655334568899999999999999999999


Q ss_pred             CCCCEEEecCC--------------------------CCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHH
Q psy2960         153 AVGDHVIPDTQ--------------------------HLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLK  206 (405)
Q Consensus       153 ~~GdrV~~~~~--------------------------~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~  206 (405)
                      ++||+|++.+.                          ..|++++|+.++.+.++++|+++++++++++++++.+||+++.
T Consensus        80 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~~a~~~l~  159 (342)
T cd08266          80 KPGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGEHVDGGYAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLTAWHMLV  159 (342)
T ss_pred             CCCCEEEEccccccccchhhccccccccccccccccccCcceeEEEEechHHceeCCCCCCHHHHHhhhhHHHHHHHHHH
Confidence            99999998621                          2588999999999999999999999999999999999999988


Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCCCC
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIPK  283 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g~g  283 (405)
                      ...++++|++|+|+|+++++|++++++++..|++++.++++.+    +.+.+..++.+.+++..+  +.. +.+.+.+.+
T Consensus       160 ~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (342)
T cd08266         160 TRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSED----KLERAKELGADYVIDYRKEDFVREVRELTGKRG  235 (342)
T ss_pred             HhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHcCCCeEEecCChHHHHHHHHHhCCCC
Confidence            8889999999999999999999999999999999988875543    356667788887776543  434 666666678


Q ss_pred             CcEEEECCCchhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHH
Q psy2960         284 PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMM  363 (405)
Q Consensus       284 ~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (405)
                      +|+++|++|+......+++++++|+++.+|.........+....+.+++++.+.....           ...+..+.+++
T Consensus       236 ~d~~i~~~g~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l  304 (342)
T cd08266         236 VDVVVEHVGAATWEKSLKSLARGGRLVTCGATTGYEAPIDLRHVFWRQLSILGSTMGT-----------KAELDEALRLV  304 (342)
T ss_pred             CcEEEECCcHHHHHHHHHHhhcCCEEEEEecCCCCCCCcCHHHHhhcceEEEEEecCC-----------HHHHHHHHHHH
Confidence            9999999999888889999999999999986544333344334567888998877543           23577788999


Q ss_pred             HcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         364 RTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       364 ~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      +++.+++.+++.|+++++++||+.+.  ++...+|+++++
T Consensus       305 ~~~~l~~~~~~~~~~~~~~~a~~~~~--~~~~~~kvv~~~  342 (342)
T cd08266         305 FRGKLKPVIDSVFPLEEAAEAHRRLE--SREQFGKIVLTP  342 (342)
T ss_pred             HcCCcccceeeeEcHHHHHHHHHHHH--hCCCCceEEEeC
Confidence            99999888889999999999999998  778889999864

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=100.00  E-value=1.8e-38  Score=304.33  Aligned_cols=308  Identities=22%  Similarity=0.304  Sum_probs=260.1

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||++++..++++.  +.+.+.|.|.++++||+|++.++++|+.|+....|.++....+|.++|+|++|+|+.+|++++.+
T Consensus         1 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~   78 (338)
T cd08254           1 MKAWRFHKGSKGL--LVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNF   78 (338)
T ss_pred             CeeEEEecCCCCc--eEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccC
Confidence            7999999998863  67888999999999999999999999999999998776444567899999999999999999999


Q ss_pred             CCCCEEEecC--------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHH
Q psy2960         153 AVGDHVIPDT--------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLK  206 (405)
Q Consensus       153 ~~GdrV~~~~--------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~  206 (405)
                      ++||+|++.+                          ...|+|++|+.++.+.++++|+++++++++.++.+++|||+++.
T Consensus        79 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a~~~~~~~~ta~~~l~  158 (338)
T cd08254          79 KVGDRVAVPAVIPCGACALCRRGRGNLCLNQGMPGLGIDGGFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVV  158 (338)
T ss_pred             CCCCEEEECCCCCCCCChhhhCcCcccCCCCCccccccCCcceeeEEechHHeEECCCCCCHHHhhhhcchHHHHHHHHH
Confidence            9999998610                          12489999999999999999999999999999999999999998


Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCCCC
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIPK  283 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g~g  283 (405)
                      ....+++|++|||.|+ |++|++++++|+.+|+++++++++.    .+.+.++++|.+++++.++  ... + +.+.+++
T Consensus       159 ~~~~~~~~~~vli~g~-g~vG~~~~~la~~~G~~V~~~~~s~----~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~  232 (338)
T cd08254         159 RAGEVKPGETVLVIGL-GGLGLNAVQIAKAMGAAVIAVDIKE----EKLELAKELGADEVLNSLDDSPKDKK-AAGLGGG  232 (338)
T ss_pred             hccCCCCCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEcCCH----HHHHHHHHhCCCEEEcCCCcCHHHHH-HHhcCCC
Confidence            8888999999999865 8999999999999999988887553    3467778899999887653  333 5 5666788


Q ss_pred             CcEEEECCCch-hHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHH
Q psy2960         284 PKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEM  362 (405)
Q Consensus       284 ~Dvvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (405)
                      +|+++||+|.. ....++++|+++|+++.+|.... ...++...++.++.++.+++...           .+.++.+.++
T Consensus       233 ~D~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l  300 (338)
T cd08254         233 FDVIFDFVGTQPTFEDAQKAVKPGGRIVVVGLGRD-KLTVDLSDLIARELRIIGSFGGT-----------PEDLPEVLDL  300 (338)
T ss_pred             ceEEEECCCCHHHHHHHHHHhhcCCEEEEECCCCC-CCccCHHHHhhCccEEEEeccCC-----------HHHHHHHHHH
Confidence            99999999864 56678999999999999985332 23344455677888888865432           3457888899


Q ss_pred             HHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         363 MRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       363 ~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      +++|.+++. .++|+++++++|++.+.  +++..||+|+++
T Consensus       301 l~~~~l~~~-~~~~~~~~~~~a~~~~~--~~~~~~kvv~~~  338 (338)
T cd08254         301 IAKGKLDPQ-VETRPLDEIPEVLERLH--KGKVKGRVVLVP  338 (338)
T ss_pred             HHcCCCccc-ceeEcHHHHHHHHHHHH--cCCccceEEEeC
Confidence            999999876 78899999999999999  889999999875

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=3.3e-38  Score=300.30  Aligned_cols=317  Identities=21%  Similarity=0.329  Sum_probs=266.0

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||++++.+++.+ +.+++++.+.|.+.+++|+|++.++++|++|+....|.+......|.++|||++|+|+.+|+++.+|
T Consensus         1 ~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~   79 (326)
T cd08272           1 MKALVLESFGGP-EVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRF   79 (326)
T ss_pred             CeEEEEccCCCc-hheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCC
Confidence            789999988876 3478888888889999999999999999999999888655334568899999999999999999999


Q ss_pred             CCCCEEEecCC----CCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHH
Q psy2960         153 AVGDHVIPDTQ----HLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQ  228 (405)
Q Consensus       153 ~~GdrV~~~~~----~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~  228 (405)
                      ++||+|+++..    ..|+|++|+.++...++++|+++++.+++.++..+.+||+++.+.+++++|++|+|+|++|++|+
T Consensus        80 ~~Gd~V~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~  159 (326)
T cd08272          80 RVGDEVYGCAGGLGGLQGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGH  159 (326)
T ss_pred             CCCCEEEEccCCcCCCCCceeEEEEecHHHcccCCCCCCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHH
Confidence            99999998731    25899999999999999999999999999999999999999888889999999999999999999


Q ss_pred             HHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh-HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccC
Q psy2960         229 NVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE-LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSK  306 (405)
Q Consensus       229 ~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d-~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~  306 (405)
                      +++++|+.+|+++++++++ +    +.+.++++|.+.+++... +.. +.+.+.+.++|+++||+|+.....++++++++
T Consensus       160 ~~~~~a~~~g~~v~~~~~~-~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~l~~~  234 (326)
T cd08272         160 VAVQLAKAAGARVYATASS-E----KAAFARSLGADPIIYYRETVVEYVAEHTGGRGFDVVFDTVGGETLDASFEAVALY  234 (326)
T ss_pred             HHHHHHHHcCCEEEEEech-H----HHHHHHHcCCCEEEecchhHHHHHHHhcCCCCCcEEEECCChHHHHHHHHHhccC
Confidence            9999999999999988754 3    356778899988887543 444 77788788999999999998777889999999


Q ss_pred             CEEEEEeccCCCCcccCcccccccCeEEEEEecch--hhhhhccHHHHHHHHHHHHHHHHcCcccCCcc-eeeehhhHHH
Q psy2960         307 GVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTR--WQKENKESAERKSMMNELTEMMRTGKLAAPAH-KFVTLKNFQE  383 (405)
Q Consensus       307 G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~-~~~~~~~~~~  383 (405)
                      |+++.+|...  ..  .......+++++.++.+..  ...  ..+....+.++.+.+++.++.+++.++ +.|+++++++
T Consensus       235 g~~v~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~  308 (326)
T cd08272         235 GRVVSILGGA--TH--DLAPLSFRNATYSGVFTLLPLLTG--EGRAHHGEILREAARLVERGQLRPLLDPRTFPLEEAAA  308 (326)
T ss_pred             CEEEEEecCC--cc--chhhHhhhcceEEEEEcccccccc--cchhhHHHHHHHHHHHHHCCCcccccccceecHHHHHH
Confidence            9999998543  11  2222236788888877543  211  122455678899999999999987655 8999999999


Q ss_pred             HHHHHhhhcCCCCceEEEEe
Q psy2960         384 ALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       384 A~~~~~~~~~~~~gKvvl~~  403 (405)
                      +|+.+.  +++..+|+++++
T Consensus       309 ~~~~~~--~~~~~~~vv~~~  326 (326)
T cd08272         309 AHARLE--SGSARGKIVIDV  326 (326)
T ss_pred             HHHHHH--cCCcccEEEEEC
Confidence            999998  778889999874

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.9e-38  Score=302.68  Aligned_cols=298  Identities=27%  Similarity=0.396  Sum_probs=246.3

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||++++..++ + +.+++++.+.|+++++||+||+.++++|++|++...+. +. ..+|.++|||++|+|+.+|++++.|
T Consensus         1 ~~~~~~~~~~-~-~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~-~~-~~~~~~~g~e~~G~v~~vG~~v~~~   76 (325)
T cd08264           1 MKALVFEKSG-I-ENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAV-KV-KPMPHIPGAEFAGVVEEVGDHVKGV   76 (325)
T ss_pred             CeeEEeccCC-C-CceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhCC-CC-CCCCeecccceeEEEEEECCCCCCC
Confidence            7899998776 2 44888888988899999999999999999999887752 21 2357799999999999999999999


Q ss_pred             CCCCEEEecCC--------------------------CCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHH
Q psy2960         153 AVGDHVIPDTQ--------------------------HLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLK  206 (405)
Q Consensus       153 ~~GdrV~~~~~--------------------------~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~  206 (405)
                      ++||+|++.+.                          ..|+|++|+.++.+.++++|+++++++++.+++++.|||+++.
T Consensus        77 ~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~  156 (325)
T cd08264          77 KKGDRVVVYNRVFDGTCDMCLSGNEMLCRNGGIIGVVSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHALK  156 (325)
T ss_pred             CCCCEEEECCCcCCCCChhhcCCCccccCccceeeccCCCceeeEEEcCHHHceeCCCCCCHHHhhhhhhhhHHHHHHHH
Confidence            99999997521                          2589999999999999999999999999999999999999997


Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH-HhhhcCCCCCc
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPK  285 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~D  285 (405)
                      . +++++|++|+|+|++|++|++++++|+++|++++++++        .+.++++|++++++.++..+ +.+.+  +++|
T Consensus       157 ~-~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~~--------~~~~~~~g~~~~~~~~~~~~~l~~~~--~~~d  225 (325)
T cd08264         157 T-AGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVSR--------KDWLKEFGADEVVDYDEVEEKVKEIT--KMAD  225 (325)
T ss_pred             h-cCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeH--------HHHHHHhCCCeeecchHHHHHHHHHh--CCCC
Confidence            6 89999999999999999999999999999999888762        25567899999998776544 66666  6899


Q ss_pred             EEEECCCchhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHc
Q psy2960         286 LALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRT  365 (405)
Q Consensus       286 vvld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (405)
                      +|+||+|+.....++++++++|+++.+|........++...++.++.++.+...+.           .+.+.++++++..
T Consensus       226 ~vl~~~g~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~~  294 (325)
T cd08264         226 VVINSLGSSFWDLSLSVLGRGGRLVTFGTLTGGEVKLDLSDLYSKQISIIGSTGGT-----------RKELLELVKIAKD  294 (325)
T ss_pred             EEEECCCHHHHHHHHHhhccCCEEEEEecCCCCCCccCHHHHhhcCcEEEEccCCC-----------HHHHHHHHHHHHc
Confidence            99999999877889999999999999986422223445555666777887765432           2346667777754


Q ss_pred             CcccCCcceeeehhhHHHHHHHHhhhcCCCCceEE
Q psy2960         366 GKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYY  400 (405)
Q Consensus       366 g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvv  400 (405)
                      ..  ..+.+.|+++++++||+.+.  ++.+.+|++
T Consensus       295 ~~--~~~~~~~~~~~~~~a~~~~~--~~~~~~kv~  325 (325)
T cd08264         295 LK--VKVWKTFKLEEAKEALKELF--SKERDGRIL  325 (325)
T ss_pred             CC--ceeEEEEcHHHHHHHHHHHH--cCCCccccC
Confidence            43  44678999999999999998  777788763

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=100.00  E-value=1.6e-38  Score=305.62  Aligned_cols=303  Identities=24%  Similarity=0.306  Sum_probs=249.6

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCC-CCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQ-KHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSS  151 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~-~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~  151 (405)
                      ||++++.+++.    +++++.|.|+|. ++||+|++.++++|+.|++...|.++.  .+|.++|+|++|+|+++|++++.
T Consensus         1 ~~a~~~~~~~~----~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~vG~~v~~   74 (344)
T cd08284           1 MKAVVFKGPGD----VRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIPS--TPGFVLGHEFVGEVVEVGPEVRT   74 (344)
T ss_pred             CeeEEEecCCC----ceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCCC--CCCcccccceEEEEEeeCCCccc
Confidence            68999987643    889999999985 999999999999999999998887653  45789999999999999999999


Q ss_pred             CCCCCEEEecCC------------------------------CCCcccceEeeccc--ceEEcCCCCChhhhccCCCcHH
Q psy2960         152 LAVGDHVIPDTQ------------------------------HLGTWRNYGKFNHD--VLMKVPKDIALTEISGITSNPC  199 (405)
Q Consensus       152 ~~~GdrV~~~~~------------------------------~~G~~a~~~~v~~~--~~~~iP~~~s~~~Aa~~~~~~~  199 (405)
                      +++||+|++.+.                              ..|+|++|+.++..  .++++|+++++++|++++++++
T Consensus        75 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~p~~l~~~~a~~l~~~~~  154 (344)
T cd08284          75 LKVGDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSPNLDGAQAEYVRVPFADGTLLKLPDGLSDEAALLLGDILP  154 (344)
T ss_pred             cCCCCEEEEcccCCCCCChHHhCcCcccCCCCccccccccCCCCCceeEEEEcccccCceEECCCCCCHHHhhhhcCchH
Confidence            999999998531                              14899999999975  9999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHcCCcEEeCh--hhHHH-H
Q psy2960         200 TAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN-I  275 (405)
Q Consensus       200 ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~--~d~~~-i  275 (405)
                      |||+++.. +.+++|++|||+| +|++|++++|+|+.+|+ +++++.++    +++.+.++++|+. +++.  .++.. +
T Consensus       155 ta~~~~~~-~~~~~~~~vlI~g-~g~vg~~~~~~a~~~g~~~v~~~~~~----~~~~~~~~~~g~~-~~~~~~~~~~~~l  227 (344)
T cd08284         155 TGYFGAKR-AQVRPGDTVAVIG-CGPVGLCAVLSAQVLGAARVFAVDPV----PERLERAAALGAE-PINFEDAEPVERV  227 (344)
T ss_pred             HHHhhhHh-cCCccCCEEEEEC-CcHHHHHHHHHHHHcCCceEEEEcCC----HHHHHHHHHhCCe-EEecCCcCHHHHH
Confidence            99999965 7899999999997 59999999999999997 67777433    3446777889976 3443  34555 7


Q ss_pred             hhhcCCCCCcEEEECCCc-hhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHH
Q psy2960         276 SRDASIPKPKLALNCVGG-NSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKS  354 (405)
Q Consensus       276 ~~~t~g~g~Dvvld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~  354 (405)
                      .+.+++.++|++|||+|+ .....++++++++|+++.+|.........+....+.+++++.+...           ...+
T Consensus       228 ~~~~~~~~~dvvid~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~  296 (344)
T cd08284         228 REATEGRGADVVLEAVGGAAALDLAFDLVRPGGVISSVGVHTAEEFPFPGLDAYNKNLTLRFGRC-----------PVRS  296 (344)
T ss_pred             HHHhCCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEECcCCCCCccccHHHHhhcCcEEEEecC-----------Ccch
Confidence            778878899999999996 4567789999999999999965433333444455678888875421           1245


Q ss_pred             HHHHHHHHHHcCcccCC--cceeeehhhHHHHHHHHhhhcCCCCceEEEE
Q psy2960         355 MMNELTEMMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGKSGVKYYID  402 (405)
Q Consensus       355 ~~~~~~~~~~~g~l~~~--~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~  402 (405)
                      .+++++++++++.+++.  ++++|+++++++||+.+.  +++. +|+|++
T Consensus       297 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~--~~~~-~k~Vi~  343 (344)
T cd08284         297 LFPELLPLLESGRLDLEFLIDHRMPLEEAPEAYRLFD--KRKV-LKVVLD  343 (344)
T ss_pred             hHHHHHHHHHcCCCChHHhEeeeecHHHHHHHHHHHh--cCCc-eEEEec
Confidence            67888899999998863  678899999999999988  7777 999985

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=100.00  E-value=1.1e-38  Score=283.03  Aligned_cols=302  Identities=20%  Similarity=0.222  Sum_probs=247.5

Q ss_pred             cceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEc--CCCCCCCCCCEEEecCC
Q psy2960          86 RVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVG--SDVSSLAVGDHVIPDTQ  163 (405)
Q Consensus        86 ~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG--~~v~~~~~GdrV~~~~~  163 (405)
                      +.+++++.++|+|+++|||+|+.|.+++|.-.. +....+ ....|+-+|-...|-++...  ++..+|++||.|.++  
T Consensus        25 d~F~lee~~vp~p~~GqvLl~~~ylS~DPymRg-rm~d~~-SY~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~--  100 (340)
T COG2130          25 DDFRLEEVDVPEPGEGQVLLRTLYLSLDPYMRG-RMSDAP-SYAPPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGV--  100 (340)
T ss_pred             CCceeEeccCCCCCcCceEEEEEEeccCHHHee-cccCCc-ccCCCcCCCceeECCeeEEEEecCCCCCCCCCEEEec--
Confidence            459999999999999999999999999993322 222222 12457778877766444433  567789999999988  


Q ss_pred             CCCcccceEeecccceEEcCCCCCh--hhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcE
Q psy2960         164 HLGTWRNYGKFNHDVLMKVPKDIAL--TEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKT  241 (405)
Q Consensus       164 ~~G~~a~~~~v~~~~~~~iP~~~s~--~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v  241 (405)
                        .+|+||..++.+.+.++++..-+  .....+..+..|||.+|.+.++.++|++|+|.+|+|+||..+.||||..||+|
T Consensus       101 --~GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGmpG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rV  178 (340)
T COG2130         101 --SGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRV  178 (340)
T ss_pred             --ccceEEEeechhhceecCCCCCCcchHHhhcCCchHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeE
Confidence              48999999999999999865322  23355777899999999999999999999999999999999999999999999


Q ss_pred             EEEecCCcchHHHHHHHHH-cCCcEEeChh--hHHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEeccCC
Q psy2960         242 INIVRNRDDIDKLKSYLKS-LGADYVFTEE--ELRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSR  317 (405)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~-lg~~~v~~~~--d~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~~~  317 (405)
                      +.+++++|+    .+++.+ +|.|.++|++  |+.+ +.+.+ +.|+|+.||++|++.+.+.+..|+..+|++.||..+.
T Consensus       179 VGiaGg~eK----~~~l~~~lGfD~~idyk~~d~~~~L~~a~-P~GIDvyfeNVGg~v~DAv~~~ln~~aRi~~CG~IS~  253 (340)
T COG2130         179 VGIAGGAEK----CDFLTEELGFDAGIDYKAEDFAQALKEAC-PKGIDVYFENVGGEVLDAVLPLLNLFARIPVCGAISQ  253 (340)
T ss_pred             EEecCCHHH----HHHHHHhcCCceeeecCcccHHHHHHHHC-CCCeEEEEEcCCchHHHHHHHhhccccceeeeeehhh
Confidence            999988766    566666 9999999986  4666 77776 5899999999999999999999999999999997654


Q ss_pred             CCcc-c-----CcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHHhhh
Q psy2960         318 EPVQ-I-----PTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSI  391 (405)
Q Consensus       318 ~~~~-~-----~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~  391 (405)
                      .+.+ .     ....++.+.+++.|+.......     ....+.++++.+|+++|+|+...+.+-.|+++++||..|.  
T Consensus       254 YN~~~~~~gp~~l~~l~~kr~~v~Gfiv~~~~~-----~~~~e~~~~l~~wv~~GKi~~~eti~dGlEnaP~Af~gLl--  326 (340)
T COG2130         254 YNAPELPPGPRRLPLLMAKRLRVQGFIVASDYD-----QRFPEALRELGGWVKEGKIQYRETIVDGLENAPEAFIGLL--  326 (340)
T ss_pred             cCCCCCCCCcchhhHHHhhhheeEEEEechhhh-----hhhHHHHHHHHHHHHcCceeeEeeehhhhhccHHHHHHHh--
Confidence            4322 1     1234567899999998843322     2335788999999999999988877778999999999999  


Q ss_pred             cCCCCceEEEEecC
Q psy2960         392 QGKSGVKYYIDFRQ  405 (405)
Q Consensus       392 ~~~~~gKvvl~~~~  405 (405)
                      +|+..||+|+++.+
T Consensus       327 ~G~N~GK~vvKv~~  340 (340)
T COG2130         327 SGKNFGKLVVKVAD  340 (340)
T ss_pred             cCCccceEEEEecC
Confidence            99999999999853

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=100.00  E-value=6.8e-39  Score=308.90  Aligned_cols=323  Identities=23%  Similarity=0.302  Sum_probs=248.8

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCC-CCCeEEEEEEEeecChhhhhhhcccCC--------------CCCCCCCCCccc
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSV-QKHEVVVKMLVAPVNPADINTIQGVYP--------------IKPTLPAVPGFE  137 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~-~~~eVlVkv~a~gi~~~D~~~~~g~~~--------------~~~~~p~~lG~E  137 (405)
                      ||+++++++|++.+.+++++.+.|+| +++||+|||.++++|++|++...|...              ....+|.++|||
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e   80 (350)
T cd08248           1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD   80 (350)
T ss_pred             CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence            78999999888655688899999999 499999999999999999999887421              023568899999


Q ss_pred             eEEEEEEEcCCCCCCCCCCEEEecCC--CCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCC--
Q psy2960         138 GVGEVVEVGSDVSSLAVGDHVIPDTQ--HLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSP--  213 (405)
Q Consensus       138 ~~G~V~~vG~~v~~~~~GdrV~~~~~--~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~--  213 (405)
                      ++|+|+++|++++++++||||++...  ..|+|++|+.++.+.++++|+++++++++.+++.+.|||+++.+.+.+.+  
T Consensus        81 ~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~  160 (350)
T cd08248          81 CSGVVVDIGSGVKSFEIGDEVWGAVPPWSQGTHAEYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKN  160 (350)
T ss_pred             eEEEEEecCCCcccCCCCCEEEEecCCCCCccceeEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCcc
Confidence            99999999999999999999998742  35999999999999999999999999999999999999999988777754  


Q ss_pred             --CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECC
Q psy2960         214 --GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       214 --g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                        |++|+|+|++|++|++++++|+++|+++++++++ +    +.+.++++|.+++++..+.......+.+.++|++|||+
T Consensus       161 ~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~-~----~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~vd~vi~~~  235 (350)
T cd08248         161 AAGKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST-D----AIPLVKSLGADDVIDYNNEDFEEELTERGKFDVILDTV  235 (350)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc-c----hHHHHHHhCCceEEECCChhHHHHHHhcCCCCEEEECC
Confidence              9999999999999999999999999999888743 2    35677889998888765421122223356899999999


Q ss_pred             CchhHHHHHHhcccCCEEEEEeccCCCCcc-cCc-ccccccCeEEEEEecchhhhhhc----cHHHHHHHHHHHHHHHHc
Q psy2960         292 GGNSATNLLRTLVSKGVMVTYGGMSREPVQ-IPT-SAFIFKDITLRGHWMTRWQKENK----ESAERKSMMNELTEMMRT  365 (405)
Q Consensus       292 g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~-~~~-~~~~~k~~~~~g~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  365 (405)
                      |+.....++++++++|+++.+|........ ... ...+...+++.............    ......+.+.++++++++
T Consensus       236 g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  315 (350)
T cd08248         236 GGDTEKWALKLLKKGGTYVTLVSPLLKNTDKLGLVGGMLKSAVDLLKKNVKSLLKGSHYRWGFFSPSGSALDELAKLVED  315 (350)
T ss_pred             ChHHHHHHHHHhccCCEEEEecCCcccccccccccchhhhhHHHHHHHHHHHHhcCCCeeEEEECCCHHHHHHHHHHHhC
Confidence            998778889999999999999854221110 000 00000111111000000000000    001124568889999999


Q ss_pred             CcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEE
Q psy2960         366 GKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYID  402 (405)
Q Consensus       366 g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~  402 (405)
                      |.+.+.+++.|+++++.+||+.+.  +++..+|++++
T Consensus       316 g~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~~vv~~  350 (350)
T cd08248         316 GKIKPVIDKVFPFEEVPEAYEKVE--SGHARGKTVIK  350 (350)
T ss_pred             CCEecccceeecHHHHHHHHHHHh--cCCCceEEEeC
Confidence            999887889999999999999998  77778899874

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=100.00  E-value=6.1e-38  Score=301.49  Aligned_cols=308  Identities=22%  Similarity=0.261  Sum_probs=251.6

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      |||+++++++.    +.+++.|.|+++++||+||+.++++|+.|+..+.|.++  ...|.++|+|++|+|+.+|++++.|
T Consensus         1 ~~a~~~~~~~~----l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~--~~~~~~~g~~~~G~V~~~g~~v~~~   74 (343)
T cd08236           1 MKALVLTGPGD----LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGA--YHPPLVLGHEFSGTVEEVGSGVDDL   74 (343)
T ss_pred             CeeEEEecCCc----eeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCCC--CCCCcccCcceEEEEEEECCCCCcC
Confidence            78999998764    88899999999999999999999999999998888653  2457899999999999999999999


Q ss_pred             CCCCEEEecCC--------------------------CCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHH
Q psy2960         153 AVGDHVIPDTQ--------------------------HLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLK  206 (405)
Q Consensus       153 ~~GdrV~~~~~--------------------------~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~  206 (405)
                      ++||+|++++.                          ..|+|++|+.++.+.++++|+++++++++++ ..++|||+++.
T Consensus        75 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lP~~~~~~~aa~~-~~~~ta~~~l~  153 (343)
T cd08236          75 AVGDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGSRRDGAFAEYVSVPARNLIKIPDHVDYEEAAMI-EPAAVALHAVR  153 (343)
T ss_pred             CCCCEEEEcCCCCCCCChhHHCcChhhCCCcceEecccCCcccceEEechHHeEECcCCCCHHHHHhc-chHHHHHHHHH
Confidence            99999998621                          3589999999999999999999999999888 57899999996


Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCcchHHHHHHHHHcCCcEEeChhhH-HH-HhhhcCCCC
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEEEL-RN-ISRDASIPK  283 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~-~~-i~~~t~g~g  283 (405)
                       ...+++|++|||+|+ |.+|++++|+|+.+|++ +++++++++    +.+.++++|++.++++++. .. +.+.+++.+
T Consensus       154 -~~~~~~~~~vlI~g~-g~~g~~~~~lA~~~G~~~v~~~~~~~~----~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~  227 (343)
T cd08236         154 -LAGITLGDTVVVIGA-GTIGLLAIQWLKILGAKRVIAVDIDDE----KLAVARELGADDTINPKEEDVEKVRELTEGRG  227 (343)
T ss_pred             -hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHH----HHHHHHHcCCCEEecCccccHHHHHHHhCCCC
Confidence             688999999999975 99999999999999998 777765532    3566778999999876532 33 777777788


Q ss_pred             CcEEEECCCch-hHHHHHHhcccCCEEEEEeccCCCC--cccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHH
Q psy2960         284 PKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREP--VQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELT  360 (405)
Q Consensus       284 ~Dvvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~--~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  360 (405)
                      +|++|||+|+. ....++++|+++|+++.+|......  ...+...++.+++++.+++......      ...+.++++.
T Consensus       228 ~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~  301 (343)
T cd08236         228 ADLVIEAAGSPATIEQALALARPGGKVVLVGIPYGDVTLSEEAFEKILRKELTIQGSWNSYSAP------FPGDEWRTAL  301 (343)
T ss_pred             CCEEEECCCCHHHHHHHHHHhhcCCEEEEEcccCCCcccccCCHHHHHhcCcEEEEEeeccccc------cchhhHHHHH
Confidence            99999999864 5567899999999999998543221  1112233457889999887643211      1244577888


Q ss_pred             HHHHcCccc--CCcceeeehhhHHHHHHHHhhhc-CCCCceEEE
Q psy2960         361 EMMRTGKLA--APAHKFVTLKNFQEALMNTMSIQ-GKSGVKYYI  401 (405)
Q Consensus       361 ~~~~~g~l~--~~~~~~~~~~~~~~A~~~~~~~~-~~~~gKvvl  401 (405)
                      +++++|.+.  +.+..++++++++++++.+.  + ....+|+|+
T Consensus       302 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~k~v~  343 (343)
T cd08236         302 DLLASGKIKVEPLITHRLPLEDGPAAFERLA--DREEFSGKVLL  343 (343)
T ss_pred             HHHHcCCCChHHheeeeecHHHHHHHHHHHH--cCCCCeeEEeC
Confidence            999999986  44668899999999999999  6 677889875

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=100.00  E-value=9.5e-38  Score=299.95  Aligned_cols=307  Identities=20%  Similarity=0.268  Sum_probs=244.0

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhccc-CC-CCCCCCCCCccceEEEEEEEcCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGV-YP-IKPTLPAVPGFEGVGEVVEVGSDVS  150 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~-~~-~~~~~p~~lG~E~~G~V~~vG~~v~  150 (405)
                      ||++++.++++.   +++.+.|.|.|+++||+||+.++++|++|++++.+. +. ....+|.++|||++|+|+++|++++
T Consensus         1 ~~~~~~~~~~~~---~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~   77 (341)
T PRK05396          1 MKALVKLKAEPG---LWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVT   77 (341)
T ss_pred             CceEEEecCCCc---eEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCC
Confidence            689999887754   899999999999999999999999999999977653 11 1224678999999999999999999


Q ss_pred             CCCCCCEEEecCC--------------------------CCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHH
Q psy2960         151 SLAVGDHVIPDTQ--------------------------HLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRM  204 (405)
Q Consensus       151 ~~~~GdrV~~~~~--------------------------~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~a  204 (405)
                      ++++||+|++.+.                          .+|+|++|+.++.+.++++|+++++++++.+ ..+.+++++
T Consensus        78 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~iP~~l~~~~~~~~-~~~~~~~~~  156 (341)
T PRK05396         78 GFKVGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGVGVNRPGAFAEYLVIPAFNVWKIPDDIPDDLAAIF-DPFGNAVHT  156 (341)
T ss_pred             cCCCCCEEEECCCCCCCCChhhhCcChhhCCCcceeeecCCCcceeeEEechHHeEECcCCCCHHHhHhh-hHHHHHHHH
Confidence            9999999997521                          3589999999999999999999999988855 466666666


Q ss_pred             HHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcC
Q psy2960         205 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDAS  280 (405)
Q Consensus       205 l~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~  280 (405)
                      +..  ...+|++|+|+|+ |++|++++|+|+++|++ ++++.++    +++.+.++++|+++++++++  +.+ +.+.+.
T Consensus       157 ~~~--~~~~g~~vlV~~~-g~vg~~~~~la~~~G~~~v~~~~~~----~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~  229 (341)
T PRK05396        157 ALS--FDLVGEDVLITGA-GPIGIMAAAVAKHVGARHVVITDVN----EYRLELARKMGATRAVNVAKEDLRDVMAELGM  229 (341)
T ss_pred             HHc--CCCCCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCC----HHHHHHHHHhCCcEEecCccccHHHHHHHhcC
Confidence            543  3468999999875 99999999999999995 5555322    34567888999999997653  555 777887


Q ss_pred             CCCCcEEEECCCch-hHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHH
Q psy2960         281 IPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNEL  359 (405)
Q Consensus       281 g~g~Dvvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  359 (405)
                      +.++|+||||.|+. ....++++++++|+++.+|.... ...++...+..+++++.++.....          .+.+..+
T Consensus       230 ~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~~~~  298 (341)
T PRK05396        230 TEGFDVGLEMSGAPSAFRQMLDNMNHGGRIAMLGIPPG-DMAIDWNKVIFKGLTIKGIYGREM----------FETWYKM  298 (341)
T ss_pred             CCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCC-CCcccHHHHhhcceEEEEEEccCc----------cchHHHH
Confidence            88999999999865 45678999999999999985432 223334556678888887653211          2335567


Q ss_pred             HHHHHcC-cccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEec
Q psy2960         360 TEMMRTG-KLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       360 ~~~~~~g-~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                      +++++++ ++.+.+.++|+++++++||+.+.  +++ .||+|++++
T Consensus       299 ~~~~~~~~~~~~~~~~~~~l~~~~~a~~~~~--~~~-~gk~vv~~~  341 (341)
T PRK05396        299 SALLQSGLDLSPIITHRFPIDDFQKGFEAMR--SGQ-SGKVILDWD  341 (341)
T ss_pred             HHHHHcCCChhHheEEEEeHHHHHHHHHHHh--cCC-CceEEEecC
Confidence            7888888 45555778999999999999998  766 799999875

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=100.00  E-value=1.9e-37  Score=294.76  Aligned_cols=322  Identities=21%  Similarity=0.329  Sum_probs=267.1

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||++.+..++.+ ..+.+.+.+.|.+++++++|+|.++++|++|++...+.++....+|.++|||++|+|+.+|+++.++
T Consensus         1 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~   79 (325)
T TIGR02824         1 MKAIEITEPGGP-EVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRW   79 (325)
T ss_pred             CceEEEccCCCc-ccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCC
Confidence            678888876654 4477777777778999999999999999999998887665434567899999999999999999999


Q ss_pred             CCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHH
Q psy2960         153 AVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQ  232 (405)
Q Consensus       153 ~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiq  232 (405)
                      ++||+|+++. .+|++++|+.++...++++|+++++.++++++.++.|+|+++...+.+++|++|+|+|++|++|+++++
T Consensus        80 ~~Gd~V~~~~-~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~  158 (325)
T TIGR02824        80 KVGDRVCALV-AGGGYAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQ  158 (325)
T ss_pred             CCCCEEEEcc-CCCcceeEEEecHHHcEeCCCCCCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHH
Confidence            9999999973 348999999999999999999999999999999999999998888899999999999999999999999


Q ss_pred             HHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChh--hHHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEE
Q psy2960         233 IARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVM  309 (405)
Q Consensus       233 la~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~--d~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~  309 (405)
                      +|+.+|+++++++++.+    +.+.++++|.+.+++..  ++.. +.+.+.+.++|+++||+|+.....++++++++|++
T Consensus       159 ~a~~~g~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~l~~~g~~  234 (325)
T TIGR02824       159 LAKAFGARVFTTAGSDE----KCAACEALGADIAINYREEDFVEVVKAETGGKGVDVILDIVGGSYLNRNIKALALDGRI  234 (325)
T ss_pred             HHHHcCCEEEEEeCCHH----HHHHHHHcCCcEEEecCchhHHHHHHHHcCCCCeEEEEECCchHHHHHHHHhhccCcEE
Confidence            99999999998876543    35667788988887654  3444 66677677899999999988777889999999999


Q ss_pred             EEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHHh
Q psy2960         310 VTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTM  389 (405)
Q Consensus       310 v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~  389 (405)
                      +.+|........++...++.+++++.++........ ..+......+.+++++++++.+++.+++.|++++++++|+.+.
T Consensus       235 v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  313 (325)
T TIGR02824       235 VQIGFQGGRKAELDLGPLLAKRLTITGSTLRARPVA-EKAAIAAELREHVWPLLASGRVRPVIDKVFPLEDAAQAHALME  313 (325)
T ss_pred             EEEecCCCCcCCCChHHHHhcCCEEEEEehhhcchh-hhHHHHHHHHHHHHHHHHCCcccCccccEEeHHHHHHHHHHHH
Confidence            999864322224444455579999999886542111 1123445677888899999999877888999999999999998


Q ss_pred             hhcCCCCceEEEEe
Q psy2960         390 SIQGKSGVKYYIDF  403 (405)
Q Consensus       390 ~~~~~~~gKvvl~~  403 (405)
                        ++...+|+++++
T Consensus       314 --~~~~~~~~v~~~  325 (325)
T TIGR02824       314 --SGDHIGKIVLTV  325 (325)
T ss_pred             --hCCCcceEEEeC
Confidence              778899999864

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.8e-37  Score=295.36  Aligned_cols=321  Identities=27%  Similarity=0.398  Sum_probs=268.7

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||++++...+.+ ..+.+.+.+.|.+.+++++|+|.++++|+.|+....|.++....+|.++|||++|+|+.+|++++++
T Consensus         1 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~   79 (328)
T cd08268           1 MRAVRFHQFGGP-EVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGF   79 (328)
T ss_pred             CeEEEEeccCCc-ceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcC
Confidence            688888876654 4477888888889999999999999999999998887665444568899999999999999999999


Q ss_pred             CCCCEEEecCC----CCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHH
Q psy2960         153 AVGDHVIPDTQ----HLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQ  228 (405)
Q Consensus       153 ~~GdrV~~~~~----~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~  228 (405)
                      ++||+|++++.    ..|++++|+.++.+.++++|+++++++++.+++++.++|+++...+.+.++++|+|+|++|++|+
T Consensus        80 ~~Gd~V~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~  159 (328)
T cd08268          80 AVGDRVSVIPAADLGQYGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGL  159 (328)
T ss_pred             CCCCEEEeccccccCCCccceEEEEechHhcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHH
Confidence            99999998742    34899999999999999999999999999999999999999988889999999999999999999


Q ss_pred             HHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhccc
Q psy2960         229 NVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVS  305 (405)
Q Consensus       229 ~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~  305 (405)
                      +++++++..|++++.++++.+    +.+.++++|.+.+++.+.  +.. +.+.+.+.++|++++|+|+.....+++++++
T Consensus       160 ~~~~~~~~~g~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~  235 (328)
T cd08268         160 AAIQIANAAGATVIATTRTSE----KRDALLALGAAHVIVTDEEDLVAEVLRITGGKGVDVVFDPVGGPQFAKLADALAP  235 (328)
T ss_pred             HHHHHHHHcCCEEEEEcCCHH----HHHHHHHcCCCEEEecCCccHHHHHHHHhCCCCceEEEECCchHhHHHHHHhhcc
Confidence            999999999999999876543    356667789888887543  444 6667767789999999999887888999999


Q ss_pred             CCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHH
Q psy2960         306 KGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEAL  385 (405)
Q Consensus       306 ~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~  385 (405)
                      +|+++.+|........++....+.+++++.++.+..+. .  .+......++.+.+++.++.+.+.++..|+++++.+++
T Consensus       236 ~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (328)
T cd08268         236 GGTLVVYGALSGEPTPFPLKAALKKSLTFRGYSLDEIT-L--DPEARRRAIAFILDGLASGALKPVVDRVFPFDDIVEAH  312 (328)
T ss_pred             CCEEEEEEeCCCCCCCCchHHHhhcCCEEEEEeccccc-C--CHHHHHHHHHHHHHHHHCCCCcCCcccEEcHHHHHHHH
Confidence            99999998544322333333346789999988765433 1  23556677888888899999988778899999999999


Q ss_pred             HHHhhhcCCCCceEEEEe
Q psy2960         386 MNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       386 ~~~~~~~~~~~gKvvl~~  403 (405)
                      +.+.  .++..+|+|++.
T Consensus       313 ~~~~--~~~~~~~vv~~~  328 (328)
T cd08268         313 RYLE--SGQQIGKIVVTP  328 (328)
T ss_pred             HHHH--cCCCCceEEEeC
Confidence            9998  788889999863

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=100.00  E-value=1.1e-37  Score=303.26  Aligned_cols=303  Identities=21%  Similarity=0.241  Sum_probs=244.4

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCC-CCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSV-QKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSS  151 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~-~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~  151 (405)
                      ||++++.+++.    +++++.|+|++ +++||+|||.+++||++|++.+.|.++.  .+|.++|||++|+|+++|+++..
T Consensus         1 m~~~~~~~~~~----~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~~--~~p~~~g~e~~G~V~~vG~~v~~   74 (375)
T cd08282           1 MKAVVYGGPGN----VAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTGA--EPGLVLGHEAMGEVEEVGSAVES   74 (375)
T ss_pred             CceEEEecCCc----eeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCC--CCCceeccccEEEEEEeCCCCCc
Confidence            68899987754    88999999996 8999999999999999999999987663  46899999999999999999999


Q ss_pred             CCCCCEEEecCC------------------------------------CCCcccceEeeccc--ceEEcCCCCChh---h
Q psy2960         152 LAVGDHVIPDTQ------------------------------------HLGTWRNYGKFNHD--VLMKVPKDIALT---E  190 (405)
Q Consensus       152 ~~~GdrV~~~~~------------------------------------~~G~~a~~~~v~~~--~~~~iP~~~s~~---~  190 (405)
                      +++||+|++.+.                                    ..|+|++|+.++..  .++++|++++++   +
T Consensus        75 ~~~Gd~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~y~~v~~~~~~~~~lP~~~~~~~~~~  154 (375)
T cd08282          75 LKVGDRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAYGYVDMGPYGGGQAEYLRVPYADFNLLKLPDRDGAKEKDD  154 (375)
T ss_pred             CCCCCEEEEeCCCCCCCCHHHHCcCcccCCCCCcccccccccccccCCCCCeeeeEEEeecccCcEEECCCCCChhhhhh
Confidence            999999986210                                    13889999999976  899999999999   5


Q ss_pred             hccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHcCCcEEeCh
Q psy2960         191 ISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTE  269 (405)
Q Consensus       191 Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~  269 (405)
                      ++.++.++.|||+++ ..+++++|++|+|.|+ |++|++++|+|+++|+ +++++.++    +.+.+.++++|++ .+++
T Consensus       155 ~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~-g~vg~~~~~~a~~~G~~~vi~~~~~----~~~~~~~~~~g~~-~v~~  227 (375)
T cd08282         155 YLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGA-GPVGLMAAYSAILRGASRVYVVDHV----PERLDLAESIGAI-PIDF  227 (375)
T ss_pred             eeeecchHHHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC----HHHHHHHHHcCCe-Eecc
Confidence            788888999999999 6689999999999876 9999999999999998 56664322    4557888899984 4555


Q ss_pred             h--hHHH-HhhhcCCCCCcEEEECCCchh------------HHHHHHhcccCCEEEEEeccCCCC------------ccc
Q psy2960         270 E--ELRN-ISRDASIPKPKLALNCVGGNS------------ATNLLRTLVSKGVMVTYGGMSREP------------VQI  322 (405)
Q Consensus       270 ~--d~~~-i~~~t~g~g~Dvvld~~g~~~------------~~~~~~~l~~~G~~v~~g~~~~~~------------~~~  322 (405)
                      +  ++.. +.+.++ +++|+++||+|++.            +..++++++++|+++.+|......            ..+
T Consensus       228 ~~~~~~~~i~~~~~-~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~  306 (375)
T cd08282         228 SDGDPVEQILGLEP-GGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGVYVAEDPGAGDAAAKQGELSF  306 (375)
T ss_pred             CcccHHHHHHHhhC-CCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEeccCCcccccccccccCccccc
Confidence            4  3444 777776 68999999999864            567899999999999887532111            122


Q ss_pred             CcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCC--cceeeehhhHHHHHHHHhhhcCCCCceEE
Q psy2960         323 PTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGKSGVKYY  400 (405)
Q Consensus       323 ~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~--~~~~~~~~~~~~A~~~~~~~~~~~~gKvv  400 (405)
                      +...++.++.++.+....           ..+.+..++++++++++++.  ++++|+++++++||+.+.  +++ .+|+|
T Consensus       307 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~--~~~-~~kvv  372 (375)
T cd08282         307 DFGLLWAKGLSFGTGQAP-----------VKKYNRQLRDLILAGRAKPSFVVSHVISLEDAPEAYARFD--KRL-ETKVV  372 (375)
T ss_pred             cHHHHHhcCcEEEEecCC-----------chhhHHHHHHHHHcCCCChHHcEEEEeeHHHHHHHHHHHh--cCC-ceEEE
Confidence            333445566666554321           13457788899999999873  789999999999999998  777 99999


Q ss_pred             EEe
Q psy2960         401 IDF  403 (405)
Q Consensus       401 l~~  403 (405)
                      +++
T Consensus       373 v~~  375 (375)
T cd08282         373 IKP  375 (375)
T ss_pred             eCC
Confidence            863

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.7e-37  Score=296.69  Aligned_cols=313  Identities=26%  Similarity=0.352  Sum_probs=253.8

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      .|+|.+...+.+ ..+++.+.+.|.|.++||+|++.++++|++|+....|.++....+|.++|||++|+|+.+|++++.|
T Consensus         1 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~   79 (331)
T cd08273           1 NREVVVTRRGGP-EVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGF   79 (331)
T ss_pred             CeeEEEccCCCc-ccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccC
Confidence            378899988876 4588999999999999999999999999999999988765433568899999999999999999999


Q ss_pred             CCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHH
Q psy2960         153 AVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQ  232 (405)
Q Consensus       153 ~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiq  232 (405)
                      ++||+|+++. ..|+|++|+.++.+.++++|+++++++++.+++++.|||+++...+++++|++|+|+|++|++|+++++
T Consensus        80 ~~Gd~V~~~~-~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~  158 (331)
T cd08273          80 EVGDRVAALT-RVGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLE  158 (331)
T ss_pred             CCCCEEEEeC-CCcceeeEEEechHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHH
Confidence            9999999983 248999999999999999999999999999999999999999887899999999999999999999999


Q ss_pred             HHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChh--hHHHHhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEE
Q psy2960         233 IARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMV  310 (405)
Q Consensus       233 la~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~--d~~~i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v  310 (405)
                      +|+.+|++++.+++ +    .+.+.++++|++.+ +.+  ++... +. .++++|+++||+|+.....++++++++|+++
T Consensus       159 ~a~~~g~~v~~~~~-~----~~~~~~~~~g~~~~-~~~~~~~~~~-~~-~~~~~d~vl~~~~~~~~~~~~~~l~~~g~~v  230 (331)
T cd08273         159 LALLAGAEVYGTAS-E----RNHAALRELGATPI-DYRTKDWLPA-ML-TPGGVDVVFDGVGGESYEESYAALAPGGTLV  230 (331)
T ss_pred             HHHHcCCEEEEEeC-H----HHHHHHHHcCCeEE-cCCCcchhhh-hc-cCCCceEEEECCchHHHHHHHHHhcCCCEEE
Confidence            99999999988874 2    34677788997644 332  22112 22 2358999999999988888899999999999


Q ss_pred             EEeccCCCCc-ccCc--------------ccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCccee
Q psy2960         311 TYGGMSREPV-QIPT--------------SAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKF  375 (405)
Q Consensus       311 ~~g~~~~~~~-~~~~--------------~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~  375 (405)
                      .+|.....+. ....              .....+++++.+.+.  ...  ..|....+.++.+++++++|.+++.+.++
T Consensus       231 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~  306 (331)
T cd08273         231 CYGGNSSLLQGRRSLAALGSLLARLAKLKLLPTGRRATFYYVWR--DRA--EDPKLFRQDLTELLDLLAKGKIRPKIAKR  306 (331)
T ss_pred             EEccCCCCCCccccccchhhhhhhhhhhcceeccceeEEEeech--hcc--cCHHHHHHHHHHHHHHHHCCCccCCcceE
Confidence            9996543221 1110              111223444444332  211  12345567889999999999999888889


Q ss_pred             eehhhHHHHHHHHhhhcCCCCceEEE
Q psy2960         376 VTLKNFQEALMNTMSIQGKSGVKYYI  401 (405)
Q Consensus       376 ~~~~~~~~A~~~~~~~~~~~~gKvvl  401 (405)
                      |+++++++||+.+.  +++..||+|+
T Consensus       307 ~~~~~~~~a~~~~~--~~~~~gkvv~  330 (331)
T cd08273         307 LPLSEVAEAHRLLE--SGKVVGKIVL  330 (331)
T ss_pred             EcHHHHHHHHHHHH--cCCCcceEEe
Confidence            99999999999998  7888999986

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=100.00  E-value=1.9e-37  Score=298.30  Aligned_cols=305  Identities=21%  Similarity=0.270  Sum_probs=246.4

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCC-CCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSV-QKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSS  151 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~-~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~  151 (405)
                      ||++++++++.    +.+.+.|.|.| +++||+||+.++++|++|++...|.++.  ..|.++|||++|+|+++|++++.
T Consensus         1 m~~~~~~~~~~----~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~--~~~~~~g~e~~G~V~~vG~~v~~   74 (345)
T cd08287           1 MRATVIHGPGD----IRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPT--RAPAPIGHEFVGVVEEVGSEVTS   74 (345)
T ss_pred             CceeEEecCCc----eeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCCC--CCCcccccceEEEEEEeCCCCCc
Confidence            78999988765    88999999986 9999999999999999999998887653  45789999999999999999999


Q ss_pred             CCCCCEEEe-cCC-------------------------CCCcccceEeeccc--ceEEcCCCCChhhhc-----cCCCcH
Q psy2960         152 LAVGDHVIP-DTQ-------------------------HLGTWRNYGKFNHD--VLMKVPKDIALTEIS-----GITSNP  198 (405)
Q Consensus       152 ~~~GdrV~~-~~~-------------------------~~G~~a~~~~v~~~--~~~~iP~~~s~~~Aa-----~~~~~~  198 (405)
                      +++||+|++ ...                         .+|+|++|+.++..  .++++|++++++.+.     ++...+
T Consensus        75 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~lP~~l~~~~~~~~~~~~l~~~~  154 (345)
T cd08287          75 VKPGDFVIAPFAISDGTCPFCRAGFTTSCVHGGFWGAFVDGGQGEYVRVPLADGTLVKVPGSPSDDEDLLPSLLALSDVM  154 (345)
T ss_pred             cCCCCEEEeccccCCCCChhhhCcCcccCCCCCcccCCCCCceEEEEEcchhhCceEECCCCCChhhhhhhhhHhhhcHH
Confidence            999999987 211                         13899999999975  999999999983221     222578


Q ss_pred             HHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-H
Q psy2960         199 CTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-I  275 (405)
Q Consensus       199 ~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i  275 (405)
                      .|||+++. .+++++|++|+|.| +|++|++++|+|+++|+++++++++.   +.+.+.++++|++.++++++  +.+ +
T Consensus       155 ~~a~~~~~-~~~~~~g~~vlI~g-~g~vg~~~~~lak~~G~~~v~~~~~~---~~~~~~~~~~ga~~v~~~~~~~~~~~i  229 (345)
T cd08287         155 GTGHHAAV-SAGVRPGSTVVVVG-DGAVGLCAVLAAKRLGAERIIAMSRH---EDRQALAREFGATDIVAERGEEAVARV  229 (345)
T ss_pred             HHHHHHHH-hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEECCC---HHHHHHHHHcCCceEecCCcccHHHHH
Confidence            89999985 57999999999977 59999999999999999866665443   34578888999999998753  445 7


Q ss_pred             hhhcCCCCCcEEEECCCch-hHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHH
Q psy2960         276 SRDASIPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKS  354 (405)
Q Consensus       276 ~~~t~g~g~Dvvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~  354 (405)
                      .+.+++.++|+++||+|+. ....++++++++|+++.+|.... ...++....+.+++++.+...           ...+
T Consensus       230 ~~~~~~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~-----------~~~~  297 (345)
T cd08287         230 RELTGGVGADAVLECVGTQESMEQAIAIARPGGRVGYVGVPHG-GVELDVRELFFRNVGLAGGPA-----------PVRR  297 (345)
T ss_pred             HHhcCCCCCCEEEECCCCHHHHHHHHHhhccCCEEEEecccCC-CCccCHHHHHhcceEEEEecC-----------CcHH
Confidence            7778788999999999864 55678999999999999885442 334444355678999987432           1245


Q ss_pred             HHHHHHHHHHcCcccCC--cceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         355 MMNELTEMMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       355 ~~~~~~~~~~~g~l~~~--~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      .++++++++.+|.+++.  +++.|+++++++||+.+.  .+.. .|++|+.
T Consensus       298 ~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~--~~~~-~k~~~~~  345 (345)
T cd08287         298 YLPELLDDVLAGRINPGRVFDLTLPLDEVAEGYRAMD--ERRA-IKVLLRP  345 (345)
T ss_pred             HHHHHHHHHHcCCCCHHHhEEeeecHHHHHHHHHHHh--CCCc-eEEEeCC
Confidence            68889999999999863  578899999999999988  6554 4999863

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.1e-37  Score=296.79  Aligned_cols=289  Identities=21%  Similarity=0.279  Sum_probs=236.2

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||++++.+++.    +++++.|.|+++++||+|||.++++|++|++...|.++    +|.++|||++|+|+++|++   +
T Consensus         1 ~~a~~~~~~~~----~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~----~~~~~G~e~~G~Vv~~G~~---~   69 (319)
T cd08242           1 MKALVLDGGLD----LRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP----FPGVPGHEFVGIVEEGPEA---E   69 (319)
T ss_pred             CeeEEEeCCCc----EEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC----CCCccCceEEEEEEEeCCC---C
Confidence            68999988653    89999999999999999999999999999999988754    4789999999999999998   6


Q ss_pred             CCCCEEEecC---------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHH
Q psy2960         153 AVGDHVIPDT---------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRML  205 (405)
Q Consensus       153 ~~GdrV~~~~---------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al  205 (405)
                      ++||||...+                           ...|+|++|+.++.+.++++|+++++++++.+ ....++|.++
T Consensus        70 ~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~~~~~~  148 (319)
T cd08242          70 LVGKRVVGEINIACGRCEYCRRGLYTHCPNRTVLGIVDRDGAFAEYLTLPLENLHVVPDLVPDEQAVFA-EPLAAALEIL  148 (319)
T ss_pred             CCCCeEEECCCcCCCCChhhhCcCcccCCCCcccCccCCCCceEEEEEechHHeEECcCCCCHHHhhhh-hHHHHHHHHH
Confidence            7999997421                           12589999999999999999999999998864 3455566555


Q ss_pred             HhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCc
Q psy2960         206 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPK  285 (405)
Q Consensus       206 ~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~D  285 (405)
                       ...++++|++|||+| +|++|++++|+|+.+|+++++++++.    ++++.++++|++.++++++.      +.+.++|
T Consensus       149 -~~~~~~~g~~vlV~g-~g~vg~~~~q~a~~~G~~vi~~~~~~----~~~~~~~~~g~~~~~~~~~~------~~~~~~d  216 (319)
T cd08242         149 -EQVPITPGDKVAVLG-DGKLGLLIAQVLALTGPDVVLVGRHS----EKLALARRLGVETVLPDEAE------SEGGGFD  216 (319)
T ss_pred             -HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEcCCH----HHHHHHHHcCCcEEeCcccc------ccCCCCC
Confidence             568999999999997 59999999999999999988886543    45788888999988876432      3467899


Q ss_pred             EEEECCCch-hHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHH
Q psy2960         286 LALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMR  364 (405)
Q Consensus       286 vvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (405)
                      +++||+|+. ....++++++++|+++..+... ....++...+..++.++.+.+...              +++++++++
T Consensus       217 ~vid~~g~~~~~~~~~~~l~~~g~~v~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~--------------~~~~~~~~~  281 (319)
T cd08242         217 VVVEATGSPSGLELALRLVRPRGTVVLKSTYA-GPASFDLTKAVVNEITLVGSRCGP--------------FAPALRLLR  281 (319)
T ss_pred             EEEECCCChHHHHHHHHHhhcCCEEEEEcccC-CCCccCHHHheecceEEEEEeccc--------------HHHHHHHHH
Confidence            999999874 5567889999999999876432 223444455667888888875432              567788999


Q ss_pred             cCcc--cCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         365 TGKL--AAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       365 ~g~l--~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      +|++  .+.+++.|+++++++||+.+.  ++. .+|+||++
T Consensus       282 ~~~l~~~~~~~~~~~l~~~~~a~~~~~--~~~-~~k~vi~~  319 (319)
T cd08242         282 KGLVDVDPLITAVYPLEEALEAFERAA--EPG-ALKVLLRP  319 (319)
T ss_pred             cCCCChhhceEEEEeHHHHHHHHHHHh--cCC-ceEEEeCC
Confidence            9999  455789999999999999988  555 58999864

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=5.9e-37  Score=291.86  Aligned_cols=318  Identities=24%  Similarity=0.349  Sum_probs=259.7

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||++++.+++. .+.+++++.|.|++.+++|+||+.++++|++|+....|.++. ..+|.++|||++|+|+.+|++++.+
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~-~~~~~~~g~e~~G~v~~~G~~~~~~   78 (325)
T cd08271           1 MKAWVLPKPGA-ALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPA-WSYPHVPGVDGAGVVVAVGAKVTGW   78 (325)
T ss_pred             CeeEEEccCCC-cceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCC-CCCCcccccceEEEEEEeCCCCCcC
Confidence            79999999884 223999999999999999999999999999999988776532 1347789999999999999999999


Q ss_pred             CCCCEEEecCC--CCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHH
Q psy2960         153 AVGDHVIPDTQ--HLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNV  230 (405)
Q Consensus       153 ~~GdrV~~~~~--~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~a  230 (405)
                      ++||+|++...  ..|+|++|+.++.+.++++|+++++.+++.+++.+.+||+++.+.+++++|++|+|+|++|++|+++
T Consensus        79 ~~Gd~V~~~~~~~~~~~~~s~~~~~~~~~~~ip~~~~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~  158 (325)
T cd08271          79 KVGDRVAYHASLARGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFA  158 (325)
T ss_pred             CCCCEEEeccCCCCCccceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHH
Confidence            99999998731  2589999999999999999999999999999999999999998888999999999999999999999


Q ss_pred             HHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCC
Q psy2960         231 IQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKG  307 (405)
Q Consensus       231 iqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G  307 (405)
                      +++|+..|++++.++ ++    .+.+.++++|++.+++.++  +.. +.+.+.+.++|+++||+++......+++++++|
T Consensus       159 ~~~a~~~g~~v~~~~-~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~G  233 (325)
T cd08271         159 VQLAKRAGLRVITTC-SK----RNFEYVKSLGADHVIDYNDEDVCERIKEITGGRGVDAVLDTVGGETAAALAPTLAFNG  233 (325)
T ss_pred             HHHHHHcCCEEEEEE-cH----HHHHHHHHcCCcEEecCCCccHHHHHHHHcCCCCCcEEEECCCcHhHHHHHHhhccCC
Confidence            999999999998876 32    2356778899998887653  444 777777788999999999988778899999999


Q ss_pred             EEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhc--cHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHH
Q psy2960         308 VMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENK--ESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEAL  385 (405)
Q Consensus       308 ~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~  385 (405)
                      +++.++......    ....+.+++.+....+.......+  ......+.+.+++++++++.+.+.+++.|+++++.+||
T Consensus       234 ~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~a~  309 (325)
T cd08271         234 HLVCIQGRPDAS----PDPPFTRALSVHEVALGAAHDHGDPAAWQDLRYAGEELLELLAAGKLEPLVIEVLPFEQLPEAL  309 (325)
T ss_pred             EEEEEcCCCCCc----chhHHhhcceEEEEEecccccccchhhHHHHHHHHHHHHHHHHCCCeeeccceEEcHHHHHHHH
Confidence            999997543221    111223444444443322211111  11345667888999999999988778899999999999


Q ss_pred             HHHhhhcCCCCceEEEEe
Q psy2960         386 MNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       386 ~~~~~~~~~~~gKvvl~~  403 (405)
                      +.+.  ++...+|+++++
T Consensus       310 ~~~~--~~~~~~kiv~~~  325 (325)
T cd08271         310 RALK--DRHTRGKIVVTI  325 (325)
T ss_pred             HHHH--cCCccceEEEEC
Confidence            9999  788899999874

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=100.00  E-value=3.5e-37  Score=295.06  Aligned_cols=301  Identities=22%  Similarity=0.320  Sum_probs=246.0

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||++++.+++.    +++.+.|.|++.++||+||+.++++|+.|+....|.++.  .+|.++|+|++|+|+.+|++++++
T Consensus         1 ~~a~~~~~~~~----~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~--~~p~~~g~~~~G~v~~vG~~v~~~   74 (334)
T cd08234           1 MKALVYEGPGE----LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGA--APPLVPGHEFAGVVVAVGSKVTGF   74 (334)
T ss_pred             CeeEEecCCCc----eEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCC--CCCcccccceEEEEEEeCCCCCCC
Confidence            78999988774    889999999999999999999999999999999887654  368899999999999999999999


Q ss_pred             CCCCEEEecC--------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHH
Q psy2960         153 AVGDHVIPDT--------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLK  206 (405)
Q Consensus       153 ~~GdrV~~~~--------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~  206 (405)
                      ++||+|++..                          ...|+|++|+.++.+.++++|+++++.+|+.+ ..+.++++++ 
T Consensus        75 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~l-  152 (334)
T cd08234          75 KVGDRVAVDPNIYCGECFYCRRGRPNLCENLTAVGVTRNGGFAEYVVVPAKQVYKIPDNLSFEEAALA-EPLSCAVHGL-  152 (334)
T ss_pred             CCCCEEEEcCCcCCCCCccccCcChhhCCCcceeccCCCCcceeEEEecHHHcEECcCCCCHHHHhhh-hHHHHHHHHH-
Confidence            9999998721                          03589999999999999999999999999876 7888999998 


Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH-HhhhcCCCCC
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKP  284 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~  284 (405)
                      ..+++++|++|||+|+ |++|++++++|+.+|++ ++++.+++    ++.+.++++|++.++++.+... ..+.+.+.++
T Consensus       153 ~~~~~~~g~~vlI~g~-g~vg~~~~~la~~~G~~~v~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v  227 (334)
T cd08234         153 DLLGIKPGDSVLVFGA-GPIGLLLAQLLKLNGASRVTVAEPNE----EKLELAKKLGATETVDPSREDPEAQKEDNPYGF  227 (334)
T ss_pred             HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCH----HHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCC
Confidence            6689999999999975 99999999999999998 56665443    3466778899988887653222 2245556789


Q ss_pred             cEEEECCCc-hhHHHHHHhcccCCEEEEEeccCC-CCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHH
Q psy2960         285 KLALNCVGG-NSATNLLRTLVSKGVMVTYGGMSR-EPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEM  362 (405)
Q Consensus       285 Dvvld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (405)
                      |+++||+|. .....++++++++|+++.+|.... ....++...++.+++++.+.+..            .+.+++++++
T Consensus       228 d~v~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~  295 (334)
T cd08234         228 DVVIEATGVPKTLEQAIEYARRGGTVLVFGVYAPDARVSISPFEIFQKELTIIGSFIN------------PYTFPRAIAL  295 (334)
T ss_pred             cEEEECCCChHHHHHHHHHHhcCCEEEEEecCCCCCCcccCHHHHHhCCcEEEEeccC------------HHHHHHHHHH
Confidence            999999985 455678999999999999986443 12233333344478888876532            2347788899


Q ss_pred             HHcCcccCC--cceeeehhhHHHHHHHHhhhcCCCCceEEE
Q psy2960         363 MRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGKSGVKYYI  401 (405)
Q Consensus       363 ~~~g~l~~~--~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl  401 (405)
                      ++++.+++.  ++.+|+++++++|++.+.  + ...+|+|+
T Consensus       296 ~~~~~l~~~~~~~~~~~~~~~~~a~~~~~--~-~~~~k~vi  333 (334)
T cd08234         296 LESGKIDVKGLVSHRLPLEEVPEALEGMR--S-GGALKVVV  333 (334)
T ss_pred             HHcCCCChhhhEEEEecHHHHHHHHHHHh--c-CCceEEEe
Confidence            999998753  568899999999999999  7 78899986

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=100.00  E-value=4.7e-37  Score=293.51  Aligned_cols=310  Identities=24%  Similarity=0.304  Sum_probs=250.3

Q ss_pred             eeEEEEccCCC---CccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCC--CCCCCCCCccceEEEEEEEcC
Q psy2960          73 ANKLVYNQHGT---PLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPI--KPTLPAVPGFEGVGEVVEVGS  147 (405)
Q Consensus        73 ~~a~~~~~~g~---~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~p~~lG~E~~G~V~~vG~  147 (405)
                      .|+|.+++.++   +.+.+++++.|.|++.++||+||+.++|+|+.|.....+....  +...+.++|+|++|+|+++|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~   81 (329)
T cd05288           2 NRQVVLAKRPEGPPPPDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRS   81 (329)
T ss_pred             CcEEEEeccCCCCCCccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCC
Confidence            46777776542   2366999999999999999999999999999887655543211  112356899999999999996


Q ss_pred             CCCCCCCCCEEEecCCCCCcccceEeecc-cceEEcCCCCC--hhhhcc-CCCcHHHHHHHHHhhcCCCCCCEEEEeCCC
Q psy2960         148 DVSSLAVGDHVIPDTQHLGTWRNYGKFNH-DVLMKVPKDIA--LTEISG-ITSNPCTAYRMLKDYNSLSPGDVVIQNGAN  223 (405)
Q Consensus       148 ~v~~~~~GdrV~~~~~~~G~~a~~~~v~~-~~~~~iP~~~s--~~~Aa~-~~~~~~ta~~al~~~~~~~~g~~VLI~ga~  223 (405)
                      +  ++++||||+++    ++|++|+.++. +.++++|++++  +.++++ +++++.|||+++...+.+.+|++|||+|++
T Consensus        82 ~--~~~~Gd~V~~~----~~~~~~~~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~  155 (329)
T cd05288          82 P--DFKVGDLVSGF----LGWQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAA  155 (329)
T ss_pred             C--CCCCCCEEecc----cceEEEEEecchhhcEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCc
Confidence            4  79999999987    58999999999 99999999995  555555 899999999999887889999999999999


Q ss_pred             cHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH-cCCcEEeChhh--HHH-HhhhcCCCCCcEEEECCCchhHHHH
Q psy2960         224 SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADYVFTEEE--LRN-ISRDASIPKPKLALNCVGGNSATNL  299 (405)
Q Consensus       224 G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~-lg~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~~~~~  299 (405)
                      |++|++++|+|+..|+++++++++.    .+.+.+++ +|++++++.++  +.. +.+.++ +++|++|||+|+.....+
T Consensus       156 g~ig~~~~~~a~~~G~~vi~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~~-~~~d~vi~~~g~~~~~~~  230 (329)
T cd05288         156 GAVGSVVGQIAKLLGARVVGIAGSD----EKCRWLVEELGFDAAINYKTPDLAEALKEAAP-DGIDVYFDNVGGEILDAA  230 (329)
T ss_pred             chHHHHHHHHHHHcCCEEEEEeCCH----HHHHHHHhhcCCceEEecCChhHHHHHHHhcc-CCceEEEEcchHHHHHHH
Confidence            9999999999999999998887554    34667777 99999987654  444 666664 689999999999888889


Q ss_pred             HHhcccCCEEEEEeccCCCCcc-----cCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcce
Q psy2960         300 LRTLVSKGVMVTYGGMSREPVQ-----IPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHK  374 (405)
Q Consensus       300 ~~~l~~~G~~v~~g~~~~~~~~-----~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~  374 (405)
                      +++++++|+++.+|........     ++....+.+++++.++....+.      ....+.+.++.+++.+|.+++.+..
T Consensus       231 ~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~i~~~~~~  304 (329)
T cd05288         231 LTLLNKGGRIALCGAISQYNATEPPGPKNLGNIITKRLTMQGFIVSDYA------DRFPEALAELAKWLAEGKLKYREDV  304 (329)
T ss_pred             HHhcCCCceEEEEeeccCcccccccccccHHHHhhCcceEEeecchhhH------HHHHHHHHHHHHHHHCCCccccccc
Confidence            9999999999999865432211     2234456788999887764322      2335678889999999999987777


Q ss_pred             eeehhhHHHHHHHHhhhcCCCCceEEE
Q psy2960         375 FVTLKNFQEALMNTMSIQGKSGVKYYI  401 (405)
Q Consensus       375 ~~~~~~~~~A~~~~~~~~~~~~gKvvl  401 (405)
                      .++++++++||+.+.  +++..||+|+
T Consensus       305 ~~~l~~~~~a~~~~~--~~~~~gkvvv  329 (329)
T cd05288         305 VEGLENAPEAFLGLF--TGKNTGKLVV  329 (329)
T ss_pred             cccHHHHHHHHHHHh--cCCCccceeC
Confidence            899999999999998  7888899874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08251 polyketide_synthase polyketide synthase

Probab=100.00  E-value=5.9e-37  Score=288.69  Aligned_cols=297  Identities=20%  Similarity=0.294  Sum_probs=247.7

Q ss_pred             CCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCCCCCCEEEecC-CCCCcccceEe
Q psy2960          95 LNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDT-QHLGTWRNYGK  173 (405)
Q Consensus        95 ~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~~GdrV~~~~-~~~G~~a~~~~  173 (405)
                      .|.+.+++++||+.++++|+.|++...|.++..+.+|.++|+|++|+|+++|++++++++||+|+++. ...|+|++|+.
T Consensus         2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~g~~~~~~~   81 (303)
T cd08251           2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTGESMGGHATLVT   81 (303)
T ss_pred             CCCCCCCEEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecCCCCcceeeEEE
Confidence            46789999999999999999999999887654446788999999999999999999999999999874 24589999999


Q ss_pred             ecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHH
Q psy2960         174 FNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDK  253 (405)
Q Consensus       174 v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~  253 (405)
                      ++.+.++++|++++++++++++..++|||+++. .+.+++|++|+|++++|++|++++|+|+++|+++++++++.    .
T Consensus        82 ~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l~-~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~~----~  156 (303)
T cd08251          82 VPEDQVVRKPASLSFEEACALPVVFLTVIDAFA-RAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASSD----D  156 (303)
T ss_pred             ccHHHeEECCCCCCHHHHHHhHHHHHHHHHHHH-hcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCCH----H
Confidence            999999999999999999999999999999985 58999999999999999999999999999999999887553    3


Q ss_pred             HHHHHHHcCCcEEeChh--hHHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEeccCCC-CcccCcccccc
Q psy2960         254 LKSYLKSLGADYVFTEE--ELRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSRE-PVQIPTSAFIF  329 (405)
Q Consensus       254 ~~~~~~~lg~~~v~~~~--d~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~  329 (405)
                      +.+.++++|++.+++..  ++.. +.+.+.+.++|+++||+++.....++++++++|+++.+|..... ...+.... +.
T Consensus       157 ~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~-~~  235 (303)
T cd08251         157 KLEYLKQLGVPHVINYVEEDFEEEIMRLTGGRGVDVVINTLSGEAIQKGLNCLAPGGRYVEIAMTALKSAPSVDLSV-LS  235 (303)
T ss_pred             HHHHHHHcCCCEEEeCCCccHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHhccCcEEEEEeccCCCccCccChhH-hh
Confidence            46777889999998754  3555 77788888999999999988878889999999999999854321 11222222 34


Q ss_pred             cCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEE
Q psy2960         330 KDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYI  401 (405)
Q Consensus       330 k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl  401 (405)
                      +++++....+..+....  ++...+.+.++.+++++|.+++.+++.|++++++++|+.+.  +++..+|+++
T Consensus       236 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iv~  303 (303)
T cd08251         236 NNQSFHSVDLRKLLLLD--PEFIADYQAEMVSLVEEGELRPTVSRIFPFDDIGEAYRYLS--DRENIGKVVV  303 (303)
T ss_pred             cCceEEEEehHHhhhhC--HHHHHHHHHHHHHHHHCCCccCCCceEEcHHHHHHHHHHHH--hCCCcceEeC
Confidence            56666666554333222  24556778889999999999988889999999999999998  7888899874

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=5.6e-37  Score=299.04  Aligned_cols=294  Identities=19%  Similarity=0.300  Sum_probs=236.7

Q ss_pred             eEeeeecCCCCCCCeEEEEEEEeecChhhhhhhccc------CCCCCCCCCCCccceEEEEEEEcCCCCCCCCCCEEEec
Q psy2960          88 VTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGV------YPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPD  161 (405)
Q Consensus        88 l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~------~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~~GdrV~~~  161 (405)
                      +++++.|.|+++++||+||+.++|+|++|++.+.+.      ++....+|.++|||++|+|+++|++++.|++||||++.
T Consensus        39 ~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~  118 (384)
T cd08265          39 LRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGKNVKNFEKGDPVTAE  118 (384)
T ss_pred             EEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECCCCCCCCCCCEEEEC
Confidence            899999999999999999999999999999988632      12223568899999999999999999999999999862


Q ss_pred             C--------------------------CCCCcccceEeecccceEEcCCCC-------ChhhhccCCCcHHHHHHHHHhh
Q psy2960         162 T--------------------------QHLGTWRNYGKFNHDVLMKVPKDI-------ALTEISGITSNPCTAYRMLKDY  208 (405)
Q Consensus       162 ~--------------------------~~~G~~a~~~~v~~~~~~~iP~~~-------s~~~Aa~~~~~~~ta~~al~~~  208 (405)
                      +                          ...|+|++|+.++.+.++++|+++       +++ +++++.++++||+++...
T Consensus       119 ~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~g~~~~~v~v~~~~~~~lP~~~~~~~~~~~~~-~a~~~~~~~ta~~al~~~  197 (384)
T cd08265         119 EMMWCGMCRACRSGSPNHCKNLKELGFSADGAFAEYIAVNARYAWEINELREIYSEDKAFE-AGALVEPTSVAYNGLFIR  197 (384)
T ss_pred             CCCCCCCChhhhCcCcccCCCcceeeecCCCcceeeEEechHHeEECCccccccccCCCHH-HhhhhhHHHHHHHHHHhh
Confidence            1                          125899999999999999999864       444 666777899999999665


Q ss_pred             -cCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHcCCcEEeChh-----hHHH-HhhhcC
Q psy2960         209 -NSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEE-----ELRN-ISRDAS  280 (405)
Q Consensus       209 -~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~-----d~~~-i~~~t~  280 (405)
                       +++++|++|||+|+ |++|++++|+|+.+|+ +++++.+++    ++.+.++++|++++++++     ++.. +.+.+.
T Consensus       198 ~~~~~~g~~VlV~g~-g~vG~~ai~lA~~~G~~~vi~~~~~~----~~~~~~~~~g~~~~v~~~~~~~~~~~~~v~~~~~  272 (384)
T cd08265         198 GGGFRPGAYVVVYGA-GPIGLAAIALAKAAGASKVIAFEISE----ERRNLAKEMGADYVFNPTKMRDCLSGEKVMEVTK  272 (384)
T ss_pred             cCCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCH----HHHHHHHHcCCCEEEcccccccccHHHHHHHhcC
Confidence             68999999999965 9999999999999999 466665432    357888999999999865     4555 888888


Q ss_pred             CCCCcEEEECCCch--hHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHH
Q psy2960         281 IPKPKLALNCVGGN--SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNE  358 (405)
Q Consensus       281 g~g~Dvvld~~g~~--~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~  358 (405)
                      ++++|+|+||.|+.  ....++++++++|+++.+|.... ...++...+..+..++.+.+...          ....+++
T Consensus       273 g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~~~  341 (384)
T cd08265         273 GWGADIQVEAAGAPPATIPQMEKSIAINGKIVYIGRAAT-TVPLHLEVLQVRRAQIVGAQGHS----------GHGIFPS  341 (384)
T ss_pred             CCCCCEEEECCCCcHHHHHHHHHHHHcCCEEEEECCCCC-CCcccHHHHhhCceEEEEeeccC----------CcchHHH
Confidence            88999999999963  55678999999999999985432 22333344555677777765321          1235788


Q ss_pred             HHHHHHcCcccCC--cceeeehhhHHHHHHHHhhhcCCCCceEEE
Q psy2960         359 LTEMMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGKSGVKYYI  401 (405)
Q Consensus       359 ~~~~~~~g~l~~~--~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl  401 (405)
                      +++++++|.+++.  ++++|+++++++||+.+.  + ...+|+|+
T Consensus       342 ~~~ll~~g~l~~~~~~~~~~~~~~~~~a~~~~~--~-~~~~kvvv  383 (384)
T cd08265         342 VIKLMASGKIDMTKIITARFPLEGIMEAIKAAS--E-RTDGKITI  383 (384)
T ss_pred             HHHHHHcCCCChHHheEEEeeHHHHHHHHHHHh--c-CCCceEEe
Confidence            8999999999864  678899999999999966  5 46889886

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=100.00  E-value=6.8e-37  Score=294.25  Aligned_cols=300  Identities=23%  Similarity=0.307  Sum_probs=240.7

Q ss_pred             EEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcc-cCCC-CCCCCCCCccceEEEEEEEcCCCCCCC
Q psy2960          76 LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQG-VYPI-KPTLPAVPGFEGVGEVVEVGSDVSSLA  153 (405)
Q Consensus        76 ~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g-~~~~-~~~~p~~lG~E~~G~V~~vG~~v~~~~  153 (405)
                      ++++++..    +.+++.|.|.+.++||+|||.++++|+.|++.+.+ ..+. ...+|.++|+|++|+|+++|+++++|+
T Consensus         2 ~~~~~~~~----~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~   77 (343)
T cd05285           2 AVLHGPGD----LRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLK   77 (343)
T ss_pred             ceEecCCc----eeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCC
Confidence            45566543    88999999999999999999999999999987642 2211 123577899999999999999999999


Q ss_pred             CCCEEEecC---------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHH
Q psy2960         154 VGDHVIPDT---------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLK  206 (405)
Q Consensus       154 ~GdrV~~~~---------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~  206 (405)
                      +||+|++.+                           ...|+|++|+.++++.++++|+++++++|+.+ .++.+|++++ 
T Consensus        78 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~~~~~aa~~-~~~~~a~~~~-  155 (343)
T cd05285          78 VGDRVAIEPGVPCRTCEFCKSGRYNLCPDMRFAATPPVDGTLCRYVNHPADFCHKLPDNVSLEEGALV-EPLSVGVHAC-  155 (343)
T ss_pred             CCCEEEEccccCCCCChhHhCcCcccCcCccccccccCCCceeeeEEecHHHcEECcCCCCHHHhhhh-hHHHHHHHHH-
Confidence            999998621                           12589999999999999999999999999887 5788999997 


Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCcchHHHHHHHHHcCCcEEeChhh--H---HH-Hhhhc
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEEE--L---RN-ISRDA  279 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~---~~-i~~~t  279 (405)
                      ..+.+++|++|||+|+ |++|++++|+|+.+|++ ++++++++    ++.+.++++|++++++.++  +   .. +.+.+
T Consensus       156 ~~~~~~~g~~vlI~g~-g~vG~~a~~lak~~G~~~v~~~~~~~----~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~~  230 (343)
T cd05285         156 RRAGVRPGDTVLVFGA-GPIGLLTAAVAKAFGATKVVVTDIDP----SRLEFAKELGATHTVNVRTEDTPESAEKIAELL  230 (343)
T ss_pred             HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCH----HHHHHHHHcCCcEEeccccccchhHHHHHHHHh
Confidence            6689999999999876 89999999999999998 66665443    3467778899999998653  2   44 77778


Q ss_pred             CCCCCcEEEECCCch-hHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHH
Q psy2960         280 SIPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNE  358 (405)
Q Consensus       280 ~g~g~Dvvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~  358 (405)
                      .+.++|++|||.|+. ....++++++++|+++.+|.... ...++......+++++.++...            .+.++.
T Consensus       231 ~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~  297 (343)
T cd05285         231 GGKGPDVVIECTGAESCIQTAIYATRPGGTVVLVGMGKP-EVTLPLSAASLREIDIRGVFRY------------ANTYPT  297 (343)
T ss_pred             CCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCC-CCccCHHHHhhCCcEEEEeccC------------hHHHHH
Confidence            788899999999986 66788999999999999985332 2233334455677777776432            144677


Q ss_pred             HHHHHHcCccc--CCcceeeehhhHHHHHHHHhhhcCC-CCceEEE
Q psy2960         359 LTEMMRTGKLA--APAHKFVTLKNFQEALMNTMSIQGK-SGVKYYI  401 (405)
Q Consensus       359 ~~~~~~~g~l~--~~~~~~~~~~~~~~A~~~~~~~~~~-~~gKvvl  401 (405)
                      ++++++++.+.  +.+.++|+++++.+||+.+.  +++ ..+|++|
T Consensus       298 ~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~--~~~~~~~k~~~  341 (343)
T cd05285         298 AIELLASGKVDVKPLITHRFPLEDAVEAFETAA--KGKKGVIKVVI  341 (343)
T ss_pred             HHHHHHcCCCCchHhEEEEEeHHHHHHHHHHHH--cCCCCeeEEEE
Confidence            88999999875  34678899999999999998  664 5699998

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=100.00  E-value=1.3e-36  Score=291.91  Aligned_cols=293  Identities=22%  Similarity=0.317  Sum_probs=234.0

Q ss_pred             eEeeeecCCCCCCCeEEEEEEEeecChhhhhhhc-ccCC-CCCCCCCCCccceEEEEEEEcCCCCCCCCCCEEEecC---
Q psy2960          88 VTVENETLNSVQKHEVVVKMLVAPVNPADINTIQ-GVYP-IKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDT---  162 (405)
Q Consensus        88 l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~-g~~~-~~~~~p~~lG~E~~G~V~~vG~~v~~~~~GdrV~~~~---  162 (405)
                      +.+++.|.|+++++||+|||.++++|++|++... |.++ ....+|.++|+|++|+|+++|++|++|++||+|++.+   
T Consensus         9 ~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~   88 (339)
T cd08232           9 LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQRVAVNPSRP   88 (339)
T ss_pred             eEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCEEEEccCCc
Confidence            8999999999999999999999999999998763 4331 1123578999999999999999999999999998621   


Q ss_pred             ----------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCC
Q psy2960         163 ----------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPG  214 (405)
Q Consensus       163 ----------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g  214 (405)
                                                  ...|+|++|+.++.+.++++|+++++++|+. ..+++|||+++.....+ +|
T Consensus        89 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~iP~~~~~~~aa~-~~~~~~a~~~l~~~~~~-~~  166 (339)
T cd08232          89 CGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFREYLVVDASQCVPLPDGLSLRRAAL-AEPLAVALHAVNRAGDL-AG  166 (339)
T ss_pred             CCCChHHhCcCcccCccccceeeccccCCCCCceeeEEEechHHeEECcCCCCHHHhhh-cchHHHHHHHHHhcCCC-CC
Confidence                                        1258999999999999999999999999876 57888999999776666 99


Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhc-CCCCCcEEEECCC
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDA-SIPKPKLALNCVG  292 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t-~g~g~Dvvld~~g  292 (405)
                      ++|||.|+ |++|++++|+|+.+|+ +++++.+++    .+.+.++++|+++++++++.. +.+.. ...++|+++||.|
T Consensus       167 ~~VLI~g~-g~vG~~~~~lak~~G~~~v~~~~~s~----~~~~~~~~~g~~~vi~~~~~~-~~~~~~~~~~vd~vld~~g  240 (339)
T cd08232         167 KRVLVTGA-GPIGALVVAAARRAGAAEIVATDLAD----APLAVARAMGADETVNLARDP-LAAYAADKGDFDVVFEASG  240 (339)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCCH----HHHHHHHHcCCCEEEcCCchh-hhhhhccCCCccEEEECCC
Confidence            99999875 8999999999999999 566665443    335677889999999875422 22222 2356999999999


Q ss_pred             c-hhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCC
Q psy2960         293 G-NSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAP  371 (405)
Q Consensus       293 ~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~  371 (405)
                      + .....++++|+++|+++.+|... .....+...++.+++++.+....            .+.++++++++++|.+++.
T Consensus       241 ~~~~~~~~~~~L~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~i~~~  307 (339)
T cd08232         241 APAALASALRVVRPGGTVVQVGMLG-GPVPLPLNALVAKELDLRGSFRF------------DDEFAEAVRLLAAGRIDVR  307 (339)
T ss_pred             CHHHHHHHHHHHhcCCEEEEEecCC-CCccCcHHHHhhcceEEEEEecC------------HHHHHHHHHHHHcCCCCch
Confidence            6 45677899999999999998543 22233333445688888776521            2346788899999998743


Q ss_pred             --cceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         372 --AHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       372 --~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                        +.++|+++++++|++.+.  ++...||+|+++
T Consensus       308 ~~~~~~~~~~~~~~a~~~~~--~~~~~gkvvv~~  339 (339)
T cd08232         308 PLITAVFPLEEAAEAFALAA--DRTRSVKVQLSF  339 (339)
T ss_pred             hheeEEecHHHHHHHHHHHH--hCCCceeEEEeC
Confidence              578999999999999998  788899999874

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>PLN02702 L-idonate 5-dehydrogenase

Probab=100.00  E-value=1.9e-36  Score=293.52  Aligned_cols=307  Identities=22%  Similarity=0.279  Sum_probs=239.2

Q ss_pred             cceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCC--CCCCCCCCccceEEEEEEEcCC
Q psy2960          71 YLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPI--KPTLPAVPGFEGVGEVVEVGSD  148 (405)
Q Consensus        71 ~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~p~~lG~E~~G~V~~vG~~  148 (405)
                      .+|++..+..++.    +++++.|.|+++++||+|||.++++|++|++...|....  ...+|.++|||++|+|+++|++
T Consensus        16 ~~~~~~~~~~~~~----l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~   91 (364)
T PLN02702         16 EENMAAWLVGVNT----LKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSE   91 (364)
T ss_pred             cccceEEEecCCc----eEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCC
Confidence            3444444444433    888899999999999999999999999999988763211  1135789999999999999999


Q ss_pred             CCCCCCCCEEEecC---------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHH
Q psy2960         149 VSSLAVGDHVIPDT---------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTA  201 (405)
Q Consensus       149 v~~~~~GdrV~~~~---------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta  201 (405)
                      +++|++||+|++.+                           ...|+|++|+.++...++++|++++++++++. ..+.++
T Consensus        92 v~~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~g~~~~y~~v~~~~~~~~P~~l~~~~aa~~-~~~~~a  170 (364)
T PLN02702         92 VKHLVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPENVSLEEGAMC-EPLSVG  170 (364)
T ss_pred             CCCCCCCCEEEEcCCCCCCCCcchhCcCcccCCCccccCCCCCCCcccceEEcchHHeEECCCCCCHHHHhhh-hHHHHH
Confidence            99999999998621                           11589999999999999999999999999863 245558


Q ss_pred             HHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeCh----hhHHH-Hh
Q psy2960         202 YRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE----EELRN-IS  276 (405)
Q Consensus       202 ~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~----~d~~~-i~  276 (405)
                      |+++ ...++.+|++|||+|+ |++|++++|+|+.+|+++++++++.   +.+.+.++++|++.+++.    .++.+ +.
T Consensus       171 ~~~~-~~~~~~~g~~vlI~g~-g~vG~~~~~~a~~~G~~~v~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  245 (364)
T PLN02702        171 VHAC-RRANIGPETNVLVMGA-GPIGLVTMLAARAFGAPRIVIVDVD---DERLSVAKQLGADEIVLVSTNIEDVESEVE  245 (364)
T ss_pred             HHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC---HHHHHHHHHhCCCEEEecCcccccHHHHHH
Confidence            8887 5588999999999975 9999999999999999876666443   455778889999987653    23444 54


Q ss_pred             hh--cCCCCCcEEEECCCc-hhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHH
Q psy2960         277 RD--ASIPKPKLALNCVGG-NSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERK  353 (405)
Q Consensus       277 ~~--t~g~g~Dvvld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~  353 (405)
                      +.  +.++++|+||||+|+ ..+..++++++++|+++.+|.... ...........+++++.+++...            
T Consensus       246 ~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~~------------  312 (364)
T PLN02702        246 EIQKAMGGGIDVSFDCVGFNKTMSTALEATRAGGKVCLVGMGHN-EMTVPLTPAAAREVDVVGVFRYR------------  312 (364)
T ss_pred             HHhhhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCC-CCcccHHHHHhCccEEEEeccCh------------
Confidence            44  235689999999995 566788999999999999985432 22334445667889998876421            


Q ss_pred             HHHHHHHHHHHcCccc--CCcceeeeh--hhHHHHHHHHhhhcCCCCceEEEE
Q psy2960         354 SMMNELTEMMRTGKLA--APAHKFVTL--KNFQEALMNTMSIQGKSGVKYYID  402 (405)
Q Consensus       354 ~~~~~~~~~~~~g~l~--~~~~~~~~~--~~~~~A~~~~~~~~~~~~gKvvl~  402 (405)
                      ..++.++++++++.+.  +.+.++|++  +++++||+.+.  +++..+|+||.
T Consensus       313 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~a~~~~~--~~~~~~kvv~~  363 (364)
T PLN02702        313 NTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSA--RGGNAIKVMFN  363 (364)
T ss_pred             HHHHHHHHHHHcCCCCchHheEEEeccChHHHHHHHHHHh--cCCCceEEEEe
Confidence            2467788999999986  346678655  79999999998  77788999985

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=1.4e-36  Score=290.43  Aligned_cols=300  Identities=21%  Similarity=0.264  Sum_probs=245.0

Q ss_pred             eeEEEEccCCCCc-cceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCC
Q psy2960          73 ANKLVYNQHGTPL-RVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSS  151 (405)
Q Consensus        73 ~~a~~~~~~g~~~-~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~  151 (405)
                      ||++++.+++.+. +.+++.+.+.|.++++||+||+.++++|++|++...|.++. ..+|.++|||++|+|+++|+++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~-~~~~~~~g~e~~G~V~~vG~~v~~   79 (329)
T cd08298           1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPP-PKLPLIPGHEIVGRVEAVGPGVTR   79 (329)
T ss_pred             CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCC-CCCCccccccccEEEEEECCCCCC
Confidence            7899999888531 24788888888899999999999999999999999887654 356889999999999999999999


Q ss_pred             CCCCCEEEecC---------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHH
Q psy2960         152 LAVGDHVIPDT---------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRM  204 (405)
Q Consensus       152 ~~~GdrV~~~~---------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~a  204 (405)
                      +++||+|.+.+                           ...|+|++|+.++...++++|+++++.+++.+++++.|||++
T Consensus        80 ~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~  159 (329)
T cd08298          80 FSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGYTVDGGYAEYMVADERFAYPIPEDYDDEEAAPLLCAGIIGYRA  159 (329)
T ss_pred             CcCCCEEEEeccCCCCCCChhHhCcChhhCCCccccccccCCceEEEEEecchhEEECCCCCCHHHhhHhhhhhHHHHHH
Confidence            99999998621                           025899999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCC
Q psy2960         205 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKP  284 (405)
Q Consensus       205 l~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~  284 (405)
                      + +.+++++|++|||+|+ |++|++++++|++.|+++++++++.    ++.+.++++|++.+++.+..       .+.++
T Consensus       160 ~-~~~~~~~~~~vlV~g~-g~vg~~~~~la~~~g~~v~~~~~~~----~~~~~~~~~g~~~~~~~~~~-------~~~~v  226 (329)
T cd08298         160 L-KLAGLKPGQRLGLYGF-GASAHLALQIARYQGAEVFAFTRSG----EHQELARELGADWAGDSDDL-------PPEPL  226 (329)
T ss_pred             H-HhhCCCCCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEcCCh----HHHHHHHHhCCcEEeccCcc-------CCCcc
Confidence            9 7799999999999975 9999999999999999999888664    34677788999888765431       24579


Q ss_pred             cEEEECCCc-hhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHH
Q psy2960         285 KLALNCVGG-NSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMM  363 (405)
Q Consensus       285 Dvvld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (405)
                      |+++++.+. .....++++++++|+++.+|........++... +.++..+.++....           .+.++++.+++
T Consensus       227 D~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~i~~~~~~~-----------~~~~~~~~~l~  294 (329)
T cd08298         227 DAAIIFAPVGALVPAALRAVKKGGRVVLAGIHMSDIPAFDYEL-LWGEKTIRSVANLT-----------RQDGEEFLKLA  294 (329)
T ss_pred             cEEEEcCCcHHHHHHHHHHhhcCCEEEEEcCCCCCCCccchhh-hhCceEEEEecCCC-----------HHHHHHHHHHH
Confidence            999998654 455678999999999998874221111222222 34566666654321           34577888999


Q ss_pred             HcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEE
Q psy2960         364 RTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYI  401 (405)
Q Consensus       364 ~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl  401 (405)
                      +++.+++ .+++|+++++++||+.+.  +++..||+|+
T Consensus       295 ~~~~l~~-~~~~~~~~~~~~a~~~~~--~~~~~~~~v~  329 (329)
T cd08298         295 AEIPIKP-EVETYPLEEANEALQDLK--EGRIRGAAVL  329 (329)
T ss_pred             HcCCCCc-eEEEEeHHHHHHHHHHHH--cCCCcceeeC
Confidence            9999887 468999999999999999  8899999874

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1e-36  Score=288.85  Aligned_cols=294  Identities=22%  Similarity=0.268  Sum_probs=239.6

Q ss_pred             eEeeeecCCCCCCCeEEEEEEEeecChhhhhhh-cccCCCC-CCCCCCCccceEEEEEEEcCCCCCCCCCCEEEecCCCC
Q psy2960          88 VTVENETLNSVQKHEVVVKMLVAPVNPADINTI-QGVYPIK-PTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHL  165 (405)
Q Consensus        88 l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~-~g~~~~~-~~~p~~lG~E~~G~V~~vG~~v~~~~~GdrV~~~~~~~  165 (405)
                      +++++.+.|++.++||+||+.++++|+.|++.. .|..+.. +..|.++|+|++|+|+.+|++++++++||+|+++.  .
T Consensus         7 ~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~--~   84 (312)
T cd08269           7 FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVAGLS--G   84 (312)
T ss_pred             eEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEEEec--C
Confidence            889999999999999999999999999999987 7754321 23478999999999999999999999999999873  4


Q ss_pred             CcccceEeecccceEEcCCCCChhhhccCC-CcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEE
Q psy2960         166 GTWRNYGKFNHDVLMKVPKDIALTEISGIT-SNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TIN  243 (405)
Q Consensus       166 G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~-~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~  243 (405)
                      |+|++|+.++.+.++++|+++  .++ +++ .+++++++++. .+++++|++|+|+|+ |++|++++|+|+.+|++ +++
T Consensus        85 g~~~~~~~v~~~~~~~lP~~~--~~~-~~~~~~~~~a~~~~~-~~~~~~~~~vlI~g~-g~vg~~~~~la~~~g~~~v~~  159 (312)
T cd08269          85 GAFAEYDLADADHAVPLPSLL--DGQ-AFPGEPLGCALNVFR-RGWIRAGKTVAVIGA-GFIGLLFLQLAAAAGARRVIA  159 (312)
T ss_pred             CcceeeEEEchhheEECCCch--hhh-HHhhhhHHHHHHHHH-hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEE
Confidence            899999999999999999998  233 333 67889999987 689999999999975 89999999999999999 777


Q ss_pred             EecCCcchHHHHHHHHHcCCcEEeChh--hHHH-HhhhcCCCCCcEEEECCCch-hHHHHHHhcccCCEEEEEeccCCCC
Q psy2960         244 IVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREP  319 (405)
Q Consensus       244 ~~~~~~~~~~~~~~~~~lg~~~v~~~~--d~~~-i~~~t~g~g~Dvvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~  319 (405)
                      ++++.    ++.+.++++|++++++++  ++.+ +.+.+.+.++|+++||+|+. ....++++++++|+++.+|.....+
T Consensus       160 ~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~~~g~~~~~~  235 (312)
T cd08269         160 IDRRP----ARLALARELGATEVVTDDSEAIVERVRELTGGAGADVVIEAVGHQWPLDLAGELVAERGRLVIFGYHQDGP  235 (312)
T ss_pred             ECCCH----HHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCCCC
Confidence            76543    345677889999988753  4555 77888888999999999864 4567899999999999998654333


Q ss_pred             cccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccC--CcceeeehhhHHHHHHHHhhhcCCC-C
Q psy2960         320 VQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKS-G  396 (405)
Q Consensus       320 ~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~A~~~~~~~~~~~-~  396 (405)
                      ..++......+++++.++.....       ....+.++++++++++|.+++  .+.++|+++++++|++.+.  +++. .
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~  306 (312)
T cd08269         236 RPVPFQTWNWKGIDLINAVERDP-------RIGLEGMREAVKLIADGRLDLGSLLTHEFPLEELGDAFEAAR--RRPDGF  306 (312)
T ss_pred             cccCHHHHhhcCCEEEEecccCc-------cchhhHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHH--hCCCCc
Confidence            34444455667888777653321       233567888999999999987  3568899999999999998  6655 5


Q ss_pred             ceEEE
Q psy2960         397 VKYYI  401 (405)
Q Consensus       397 gKvvl  401 (405)
                      +|++|
T Consensus       307 ~~~~~  311 (312)
T cd08269         307 IKGVI  311 (312)
T ss_pred             eEEEe
Confidence            89886

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=100.00  E-value=8.4e-37  Score=294.66  Aligned_cols=315  Identities=23%  Similarity=0.330  Sum_probs=237.2

Q ss_pred             eEEEEccCCCCccceEeeeecCCCC---CCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCC
Q psy2960          74 NKLVYNQHGTPLRVVTVENETLNSV---QKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVS  150 (405)
Q Consensus        74 ~a~~~~~~g~~~~~l~~~~~~~p~~---~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~  150 (405)
                      |++++.+++++   +++++.+.|.|   +++||+||+.++++|++|+....+........|.++|+|++|+|+++|++++
T Consensus         2 ~~~~~~~~~~~---~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~   78 (352)
T cd08247           2 KALTFKNNTSP---LTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVA   78 (352)
T ss_pred             ceEEEecCCCc---ceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccc
Confidence            68899988877   44454454443   9999999999999999999887653221112378999999999999999999


Q ss_pred             -CCCCCCEEEecCC----CCCcccceEeeccc----ceEEcCCCCChhhhccCCCcHHHHHHHHHhhc-CCCCCCEEEEe
Q psy2960         151 -SLAVGDHVIPDTQ----HLGTWRNYGKFNHD----VLMKVPKDIALTEISGITSNPCTAYRMLKDYN-SLSPGDVVIQN  220 (405)
Q Consensus       151 -~~~~GdrV~~~~~----~~G~~a~~~~v~~~----~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~-~~~~g~~VLI~  220 (405)
                       .|++||+|++...    ..|+|++|+.++..    .++++|+++++++++.+++++.|||+++...+ .+++|++|+|+
T Consensus        79 ~~~~~Gd~V~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~  158 (352)
T cd08247          79 SEWKVGDEVCGIYPHPYGGQGTLSQYLLVDPKKDKKSITRKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVL  158 (352)
T ss_pred             cCCCCCCEEEEeecCCCCCCceeeEEEEEccccccceeEECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEE
Confidence             8999999998731    25899999999988    78999999999999999999999999998877 79999999999


Q ss_pred             CCCcHHHHHHHHHHHHcC-C-cEEEEecCCcchHHHHHHHHHcCCcEEeChhh-----H-HHHhhh-cCCCCCcEEEECC
Q psy2960         221 GANSACGQNVIQIARHWG-L-KTINIVRNRDDIDKLKSYLKSLGADYVFTEEE-----L-RNISRD-ASIPKPKLALNCV  291 (405)
Q Consensus       221 ga~G~vG~~aiqla~~~G-~-~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d-----~-~~i~~~-t~g~g~Dvvld~~  291 (405)
                      |++|++|++++|+|+.+| . .++++. +.+.    .+.++++|++++++.++     + .++.+. ++++++|++|||+
T Consensus       159 ga~~~vg~~~~~~a~~~~~~~~v~~~~-~~~~----~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~d~vl~~~  233 (352)
T cd08247         159 GGSTSVGRFAIQLAKNHYNIGTVVGTC-SSRS----AELNKKLGADHFIDYDAHSGVKLLKPVLENVKGQGKFDLILDCV  233 (352)
T ss_pred             CCCchHHHHHHHHHHhcCCcceEEEEe-ChhH----HHHHHHhCCCEEEecCCCcccchHHHHHHhhcCCCCceEEEECC
Confidence            999999999999999985 4 455554 3222    34667899999987543     2 334444 4367899999999


Q ss_pred             Cc-hhHHHHHHhcc---cCCEEEEEeccCCCCcc---cC------c-ccccccCeEEEEEecchhhhhhccHHHHHHHHH
Q psy2960         292 GG-NSATNLLRTLV---SKGVMVTYGGMSREPVQ---IP------T-SAFIFKDITLRGHWMTRWQKENKESAERKSMMN  357 (405)
Q Consensus       292 g~-~~~~~~~~~l~---~~G~~v~~g~~~~~~~~---~~------~-~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~  357 (405)
                      |+ .....++++++   ++|+++.+++....+..   ++      . ...+.++.++..+.+.... ..+  .  .+.+.
T Consensus       234 g~~~~~~~~~~~l~~~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~--~~~~~  308 (352)
T cd08247         234 GGYDLFPHINSILKPKSKNGHYVTIVGDYKANYKKDTFNSWDNPSANARKLFGSLGLWSYNYQFFL-LDP--N--ADWIE  308 (352)
T ss_pred             CCHHHHHHHHHHhCccCCCCEEEEEeCCCcccccchhhhhccccchhhhhhhhhhcCCCcceEEEE-ecC--C--HHHHH
Confidence            98 45567899999   99999987633211100   00      0 0111223322222211110 011  1  25578


Q ss_pred             HHHHHHHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         358 ELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       358 ~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      .+++++.+|.+++.++++|+++++++||+.+.  +++..||+|+++
T Consensus       309 ~~~~~~~~~~l~~~~~~~~~l~~~~~a~~~~~--~~~~~gkvvi~~  352 (352)
T cd08247         309 KCAELIADGKVKPPIDSVYPFEDYKEAFERLK--SNRAKGKVVIKV  352 (352)
T ss_pred             HHHHHHhCCCeEeeeccEecHHHHHHHHHHHH--cCCCCCcEEEeC
Confidence            88899999999987889999999999999999  888999999864

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=100.00  E-value=3.4e-36  Score=285.82  Aligned_cols=319  Identities=26%  Similarity=0.383  Sum_probs=263.9

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCC-CCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQ-KHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSS  151 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~-~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~  151 (405)
                      |+++++..++.+ ..+++.+.+ |.+. +++++|++.++++|++|++...|.+......|.++|||++|+|+.+|+++..
T Consensus         1 ~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~   78 (323)
T cd08241           1 MKAVVCKELGGP-EDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTG   78 (323)
T ss_pred             CeEEEEecCCCc-ceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCC
Confidence            688888866554 347777887 7666 4999999999999999999888866443345778999999999999999999


Q ss_pred             CCCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHH
Q psy2960         152 LAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVI  231 (405)
Q Consensus       152 ~~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~ai  231 (405)
                      +++||+|+++. ..|++++|+.++.+.++++|+++++.++++++..+.+||+++.....+++|++|+|+|++|++|++++
T Consensus        79 ~~~G~~V~~~~-~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~  157 (323)
T cd08241          79 FKVGDRVVALT-GQGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAV  157 (323)
T ss_pred             CCCCCEEEEec-CCceeEEEEEcCHHHceeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHH
Confidence            99999999984 25899999999999999999999999999999999999999987789999999999999999999999


Q ss_pred             HHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChh--hHHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCE
Q psy2960         232 QIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGV  308 (405)
Q Consensus       232 qla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~--d~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~  308 (405)
                      ++|+..|++++.++++.    .+.+.++++|++.+++..  ++.+ +.+.+.+.++|.++||+|+.....++++++++|+
T Consensus       158 ~~a~~~g~~v~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~~~~g~~~~~~~~~~~~~~g~  233 (323)
T cd08241         158 QLAKALGARVIAAASSE----EKLALARALGADHVIDYRDPDLRERVKALTGGRGVDVVYDPVGGDVFEASLRSLAWGGR  233 (323)
T ss_pred             HHHHHhCCEEEEEeCCH----HHHHHHHHcCCceeeecCCccHHHHHHHHcCCCCcEEEEECccHHHHHHHHHhhccCCE
Confidence            99999999999887654    346677788988888754  3445 7777777889999999999887888999999999


Q ss_pred             EEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHH
Q psy2960         309 MVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNT  388 (405)
Q Consensus       309 ~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~  388 (405)
                      ++.+|........++....+.+++++.++.+..+....  +....+.++++.+++.++.+.+.++..|+++++.+||+.+
T Consensus       234 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (323)
T cd08241         234 LLVIGFASGEIPQIPANLLLLKNISVVGVYWGAYARRE--PELLRANLAELFDLLAEGKIRPHVSAVFPLEQAAEALRAL  311 (323)
T ss_pred             EEEEccCCCCcCcCCHHHHhhcCcEEEEEecccccchh--HHHHHHHHHHHHHHHHCCCcccccceEEcHHHHHHHHHHH
Confidence            99998533221112233345688999998765543322  2345677888999999999988788899999999999998


Q ss_pred             hhhcCCCCceEEEE
Q psy2960         389 MSIQGKSGVKYYID  402 (405)
Q Consensus       389 ~~~~~~~~gKvvl~  402 (405)
                      .  .+...+|++++
T Consensus       312 ~--~~~~~~~vvv~  323 (323)
T cd08241         312 A--DRKATGKVVLT  323 (323)
T ss_pred             H--hCCCCCcEEeC
Confidence            8  77788999864

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=100.00  E-value=2e-36  Score=289.34  Aligned_cols=302  Identities=25%  Similarity=0.328  Sum_probs=248.8

Q ss_pred             eEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCCC
Q psy2960          74 NKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLA  153 (405)
Q Consensus        74 ~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~  153 (405)
                      |+++++++|..   +++.+.|.|.+.++|++|++.++++|++|++...|.++. ..+|.++|||++|+|+++|+++++++
T Consensus         1 ~~~~~~~~~~~---~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~-~~~p~~~g~e~~G~v~~~g~~~~~~~   76 (330)
T cd08245           1 KAAVVHAAGGP---LEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGG-SKYPLVPGHEIVGEVVEVGAGVEGRK   76 (330)
T ss_pred             CeEEEecCCCC---ceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCC-CCCCcccCccceEEEEEECCCCcccc
Confidence            67888888653   899999999999999999999999999999999887643 35688999999999999999999999


Q ss_pred             CCCEEEecC---------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHH
Q psy2960         154 VGDHVIPDT---------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLK  206 (405)
Q Consensus       154 ~GdrV~~~~---------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~  206 (405)
                      +||+|+..+                           ...|+|++|+.++...++++|+++++++++.+++.+.|||+++.
T Consensus        77 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~l~~~~~ta~~~l~  156 (330)
T cd08245          77 VGDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNTGYTTQGGYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGITVYSALR  156 (330)
T ss_pred             cCCEEEEccccCCCCCChhhhCcCcccCcCccccCcccCCccccEEEEcHHHeEECCCCCCHHHhhhhhhhHHHHHHHHH
Confidence            999998421                           13589999999999999999999999999999999999999996


Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcE
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKL  286 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dv  286 (405)
                      . .++++|++|||+|+ |++|++++++|+.+|+++++++++.+    +.+.++++|++.+++..+...... . ..++|+
T Consensus       157 ~-~~~~~~~~vlI~g~-g~iG~~~~~~a~~~G~~v~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~-~-~~~~d~  228 (330)
T cd08245         157 D-AGPRPGERVAVLGI-GGLGHLAVQYARAMGFETVAITRSPD----KRELARKLGADEVVDSGAELDEQA-A-AGGADV  228 (330)
T ss_pred             h-hCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHhCCcEEeccCCcchHHh-c-cCCCCE
Confidence            6 78999999999976 78999999999999999998886643    356777889988887543222222 2 247999


Q ss_pred             EEECCCc-hhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHc
Q psy2960         287 ALNCVGG-NSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRT  365 (405)
Q Consensus       287 vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (405)
                      ++||++. .....++++++++|+++.+|.........+...++.++.++.++....           .+.++.+++++.+
T Consensus       229 vi~~~~~~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ll~~  297 (330)
T cd08245         229 ILVTVVSGAAAEAALGGLRRGGRIVLVGLPESPPFSPDIFPLIMKRQSIAGSTHGG-----------RADLQEALDFAAE  297 (330)
T ss_pred             EEECCCcHHHHHHHHHhcccCCEEEEECCCCCCccccchHHHHhCCCEEEEeccCC-----------HHHHHHHHHHHHc
Confidence            9999875 555678999999999999985433222222344666888888876542           3457778889999


Q ss_pred             CcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEE
Q psy2960         366 GKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYI  401 (405)
Q Consensus       366 g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl  401 (405)
                      +.+.+ ..+.|+++++++||+.+.  +++..+|+|+
T Consensus       298 ~~l~~-~~~~~~~~~~~~a~~~~~--~~~~~~~~v~  330 (330)
T cd08245         298 GKVKP-MIETFPLDQANEAYERME--KGDVRFRFVL  330 (330)
T ss_pred             CCCcc-eEEEEcHHHHHHHHHHHH--cCCCCcceeC
Confidence            99886 568899999999999999  8899999875

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.2e-35  Score=284.36  Aligned_cols=318  Identities=23%  Similarity=0.329  Sum_probs=257.4

Q ss_pred             eEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCCC
Q psy2960          74 NKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLA  153 (405)
Q Consensus        74 ~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~  153 (405)
                      |++.+...+.+ ..+.+.+.+.|+|.++||+||+.++++|++|++...|.++..+..|.++|||++|+|+.+|+++.+++
T Consensus         1 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~   79 (337)
T cd08275           1 RAVVLTGFGGL-DKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFK   79 (337)
T ss_pred             CeEEEcCCCCc-cceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCC
Confidence            45666665543 34778888888899999999999999999999998886654345678999999999999999999999


Q ss_pred             CCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHH
Q psy2960         154 VGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQI  233 (405)
Q Consensus       154 ~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiql  233 (405)
                      +||+|+++. ..|+|++|+.++.+.++++|+++++++++.+++++.+||+++...+++++|++|+|+|++|++|++++++
T Consensus        80 ~G~~V~~~~-~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~  158 (337)
T cd08275          80 VGDRVMGLT-RFGGYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQL  158 (337)
T ss_pred             CCCEEEEec-CCCeeeeEEEecHHHeEECCCCCCHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHH
Confidence            999999983 3589999999999999999999999999999999999999998888999999999999999999999999


Q ss_pred             HHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChh--hHHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEE
Q psy2960         234 ARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMV  310 (405)
Q Consensus       234 a~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~--d~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v  310 (405)
                      |+.+  .++.++++.+  +++++.++.+|++.+++..  ++.. +++.+ +.++|+++||+|+.....++++++++|+++
T Consensus       159 a~~~--~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~v~~~~g~~~~~~~~~~l~~~g~~v  233 (337)
T cd08275         159 CKTV--PNVTVVGTAS--ASKHEALKENGVTHVIDYRTQDYVEEVKKIS-PEGVDIVLDALGGEDTRKSYDLLKPMGRLV  233 (337)
T ss_pred             HHHc--cCcEEEEeCC--HHHHHHHHHcCCcEEeeCCCCcHHHHHHHHh-CCCceEEEECCcHHHHHHHHHhhccCcEEE
Confidence            9999  3333333322  3456777889998888764  3555 66666 468999999999988788899999999999


Q ss_pred             EEeccCCCC---c-------------ccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcce
Q psy2960         311 TYGGMSREP---V-------------QIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHK  374 (405)
Q Consensus       311 ~~g~~~~~~---~-------------~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~  374 (405)
                      .+|......   .             .+.....+.+++++.++....+....   ......+.++.+++.++.+++.+++
T Consensus       234 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  310 (337)
T cd08275         234 VYGAANLVTGEKRSWFKLAKKWWNRPKVDPMKLISENKSVLGFNLGWLFEER---ELLTEVMDKLLKLYEEGKIKPKIDS  310 (337)
T ss_pred             EEeecCCcCcccccccccccccccccccCHHHHhhcCceEEEeechhhhhCh---HHHHHHHHHHHHHHHCCCCCCceee
Confidence            998543211   1             11113446788999998765332221   1224567888999999999887888


Q ss_pred             eeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         375 FVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       375 ~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      .|++++++++++.+.  ++...+|+++++
T Consensus       311 ~~~~~~~~~~~~~~~--~~~~~~kvv~~~  337 (337)
T cd08275         311 VFPFEEVGEAMRRLQ--SRKNIGKVVLTP  337 (337)
T ss_pred             EEcHHHHHHHHHHHH--cCCCcceEEEeC
Confidence            999999999999999  788889999874

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05281 TDH Threonine dehydrogenase

Probab=100.00  E-value=6.1e-36  Score=287.40  Aligned_cols=306  Identities=23%  Similarity=0.270  Sum_probs=241.5

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccC--CCCCCCCCCCccceEEEEEEEcCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVY--PIKPTLPAVPGFEGVGEVVEVGSDVS  150 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~--~~~~~~p~~lG~E~~G~V~~vG~~v~  150 (405)
                      ||++.++.++..   +.+.+.|.|.|+++|++|||.++++|+.|++.+.+..  .....+|.++|||++|+|+.+|++++
T Consensus         1 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~   77 (341)
T cd05281           1 MKAIVKTKAGPG---AELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVT   77 (341)
T ss_pred             CcceEEecCCCc---eEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCC
Confidence            789999987753   8899999999999999999999999999998765431  11124577899999999999999999


Q ss_pred             CCCCCCEEEecCC--------------------------CCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHH
Q psy2960         151 SLAVGDHVIPDTQ--------------------------HLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRM  204 (405)
Q Consensus       151 ~~~~GdrV~~~~~--------------------------~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~a  204 (405)
                      .+++||+|++.+.                          ..|+|++|+.++.+.++++|++++++.+ +++.++.+++++
T Consensus        78 ~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~lP~~~~~~~a-~~~~~~~~a~~~  156 (341)
T cd05281          78 RVKVGDYVSAETHIVCGKCYQCRTGNYHVCQNTKILGVDTDGCFAEYVVVPEENLWKNDKDIPPEIA-SIQEPLGNAVHT  156 (341)
T ss_pred             CCCCCCEEEECCccCCCCChHHHCcCcccCcccceEeccCCCcceEEEEechHHcEECcCCCCHHHh-hhhhHHHHHHHH
Confidence            9999999988511                          3589999999999999999999998544 666788888888


Q ss_pred             HHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHHHhhhcCC
Q psy2960         205 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRNISRDASI  281 (405)
Q Consensus       205 l~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~i~~~t~g  281 (405)
                      +.  ...++|++|||+|+ |++|++++|+|+.+|+ +++++.++    +++.+.++++|++++++++.  +..+.+.+++
T Consensus       157 ~~--~~~~~g~~vlV~g~-g~vg~~~~~la~~~G~~~v~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  229 (341)
T cd05281         157 VL--AGDVSGKSVLITGC-GPIGLMAIAVAKAAGASLVIASDPN----PYRLELAKKMGADVVINPREEDVVEVKSVTDG  229 (341)
T ss_pred             HH--hcCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCC----HHHHHHHHHhCcceeeCcccccHHHHHHHcCC
Confidence            75  45679999999876 9999999999999999 56666332    34567788899999887642  2246667777


Q ss_pred             CCCcEEEECCCch-hHHHHHHhcccCCEEEEEeccCCCCcccCcc-cccccCeEEEEEecchhhhhhccHHHHHHHHHHH
Q psy2960         282 PKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTS-AFIFKDITLRGHWMTRWQKENKESAERKSMMNEL  359 (405)
Q Consensus       282 ~g~Dvvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~-~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  359 (405)
                      +++|++|||+|+. ....++++|+++|+++.+|.... ...++.. .+..+++++.++....          ..+.+.++
T Consensus       230 ~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~  298 (341)
T cd05281         230 TGVDVVLEMSGNPKAIEQGLKALTPGGRVSILGLPPG-PVDIDLNNLVIFKGLTVQGITGRK----------MFETWYQV  298 (341)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCC-CcccccchhhhccceEEEEEecCC----------cchhHHHH
Confidence            8999999999875 45678999999999999985433 2222222 3556778887765221          12346778


Q ss_pred             HHHHHcCcccC--CcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         360 TEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       360 ~~~~~~g~l~~--~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      .+++++|.+.+  .+..+++++++++||+.+.  +++ .||+|+++
T Consensus       299 ~~~l~~~~l~~~~~~~~~~~~~~~~~a~~~~~--~~~-~gk~vv~~  341 (341)
T cd05281         299 SALLKSGKVDLSPVITHKLPLEDFEEAFELMR--SGK-CGKVVLYP  341 (341)
T ss_pred             HHHHHcCCCChhHheEEEecHHHHHHHHHHHh--cCC-CceEEecC
Confidence            89999999863  4667899999999999999  788 99999864

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=100.00  E-value=1.1e-35  Score=285.48  Aligned_cols=300  Identities=20%  Similarity=0.246  Sum_probs=237.6

Q ss_pred             ccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccC--CCCCCCCCCCccceEEEEEEEcCCCCCCCCCC
Q psy2960          79 NQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVY--PIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGD  156 (405)
Q Consensus        79 ~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~--~~~~~~p~~lG~E~~G~V~~vG~~v~~~~~Gd  156 (405)
                      ++++.+   +++++.|.|.|+++||+|||.++++|+.|+.++.+..  .....+|.++|+|++|+|+++|+++++|++||
T Consensus         5 ~~~~~~---~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd   81 (340)
T TIGR00692         5 TKPGYG---AELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGD   81 (340)
T ss_pred             ccCCCC---cEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCC
Confidence            355555   8899999999999999999999999999998876541  11123577899999999999999999999999


Q ss_pred             EEEecC--------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcC
Q psy2960         157 HVIPDT--------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNS  210 (405)
Q Consensus       157 rV~~~~--------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~  210 (405)
                      +|++..                          ...|+|++|+.++.+.++++|+++++++| +++.++.+|++++.  ..
T Consensus        82 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~a-~~~~~~~~a~~~~~--~~  158 (340)
T TIGR00692        82 YVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGCFAEYAVVPAQNIWKNPKSIPPEYA-TIQEPLGNAVHTVL--AG  158 (340)
T ss_pred             EEEECCcCCCCCChhhhCcChhhCcCcceEeecCCCcceeEEEeehHHcEECcCCCChHhh-hhcchHHHHHHHHH--cc
Confidence            998731                          13589999999999999999999998655 57788899998873  46


Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCcchHHHHHHHHHcCCcEEeChh--hHHH-HhhhcCCCCCcE
Q psy2960         211 LSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIPKPKL  286 (405)
Q Consensus       211 ~~~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~--d~~~-i~~~t~g~g~Dv  286 (405)
                      +++|++|+|.|+ |++|++++|+|+.+|++ ++++ ++.   +++.+.++++|++.+++.+  ++.+ +.+.+++.++|+
T Consensus       159 ~~~g~~vlI~~~-g~vg~~a~~la~~~G~~~v~~~-~~~---~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~~~~~~~d~  233 (340)
T TIGR00692       159 PISGKSVLVTGA-GPIGLMAIAVAKASGAYPVIVS-DPN---EYRLELAKKMGATYVVNPFKEDVVKEVADLTDGEGVDV  233 (340)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEE-CCC---HHHHHHHHHhCCcEEEcccccCHHHHHHHhcCCCCCCE
Confidence            789999999875 99999999999999998 6666 332   3456778889999888764  3555 777777889999


Q ss_pred             EEECCCch-hHHHHHHhcccCCEEEEEeccCCCCcccCcc-cccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHH
Q psy2960         287 ALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTS-AFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMR  364 (405)
Q Consensus       287 vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~-~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  364 (405)
                      +|||+|++ .....+++++++|+++.+|.... ...++.. .++.+++++.+++..          ...+.+.++.++++
T Consensus       234 vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~  302 (340)
T TIGR00692       234 FLEMSGAPKALEQGLQAVTPGGRVSLLGLPPG-KVTIDFTNKVIFKGLTIYGITGR----------HMFETWYTVSRLIQ  302 (340)
T ss_pred             EEECCCCHHHHHHHHHhhcCCCEEEEEccCCC-CcccchhhhhhhcceEEEEEecC----------CchhhHHHHHHHHH
Confidence            99998864 55678999999999999985422 2222222 455677777765521          11345678889999


Q ss_pred             cCccc--CCcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         365 TGKLA--APAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       365 ~g~l~--~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      +|.++  +.+...|++++++++|+.+.  +++ .||+|+++
T Consensus       303 ~~~l~~~~~~~~~~~l~~~~~a~~~~~--~~~-~gkvvv~~  340 (340)
T TIGR00692       303 SGKLDLDPIITHKFKFDKFEKGFELMR--SGQ-TGKVILSL  340 (340)
T ss_pred             cCCCChHHheeeeeeHHHHHHHHHHHh--cCC-CceEEEeC
Confidence            99987  44678999999999999988  676 49999875

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=100.00  E-value=6.2e-36  Score=282.36  Aligned_cols=305  Identities=25%  Similarity=0.350  Sum_probs=252.3

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCC--CCCCCCCCCccceEEEEEEEcCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYP--IKPTLPAVPGFEGVGEVVEVGSDVS  150 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~~~p~~lG~E~~G~V~~vG~~v~  150 (405)
                      ||+++++.++.. ..+.+++.+.|.++++||+||+.++++|+.|++...|...  ....+|.++|||++|+|+.+|++++
T Consensus         1 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~   79 (309)
T cd05289           1 MKAVRIHEYGGP-EVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVT   79 (309)
T ss_pred             CceEEEcccCCc-cceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCC
Confidence            788999887764 3367788888889999999999999999999999887642  1234588999999999999999999


Q ss_pred             CCCCCCEEEecC--CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHH
Q psy2960         151 SLAVGDHVIPDT--QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQ  228 (405)
Q Consensus       151 ~~~~GdrV~~~~--~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~  228 (405)
                      .+++||+|+++.  ...|+|++|+.++...++++|+++++.+++.+++.+.++|+++.....+.+|++|+|+|++|++|+
T Consensus        80 ~~~~G~~V~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~  159 (309)
T cd05289          80 GFKVGDEVFGMTPFTRGGAYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGS  159 (309)
T ss_pred             CCCCCCEEEEccCCCCCCcceeEEEecHHHhccCCCCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHH
Confidence            999999999883  125899999999999999999999999999999999999999988777999999999999999999


Q ss_pred             HHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCCchhHHHHHHhcccCCE
Q psy2960         229 NVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGV  308 (405)
Q Consensus       229 ~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~  308 (405)
                      +++++|+..|+++++++++.     +.+.++++|.+++++.++..... .+.+.++|+++||+|+.....++++++++|+
T Consensus       160 ~~~~~a~~~g~~v~~~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~d~v~~~~~~~~~~~~~~~l~~~g~  233 (309)
T cd05289         160 FAVQLAKARGARVIATASAA-----NADFLRSLGADEVIDYTKGDFER-AAAPGGVDAVLDTVGGETLARSLALVKPGGR  233 (309)
T ss_pred             HHHHHHHHcCCEEEEEecch-----hHHHHHHcCCCEEEeCCCCchhh-ccCCCCceEEEECCchHHHHHHHHHHhcCcE
Confidence            99999999999999887543     35667789988888755322111 4456789999999999988889999999999


Q ss_pred             EEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHH
Q psy2960         309 MVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNT  388 (405)
Q Consensus       309 ~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~  388 (405)
                      ++.+|.......     ..+.+++++....+..        .  .+.+.++.++++++.+.+.+++.|+++++++||+.+
T Consensus       234 ~v~~g~~~~~~~-----~~~~~~~~~~~~~~~~--------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  298 (309)
T cd05289         234 LVSIAGPPPAEQ-----AAKRRGVRAGFVFVEP--------D--GEQLAELAELVEAGKLRPVVDRVFPLEDAAEAHERL  298 (309)
T ss_pred             EEEEcCCCcchh-----hhhhccceEEEEEecc--------c--HHHHHHHHHHHHCCCEEEeeccEEcHHHHHHHHHHH
Confidence            999985432111     2344677777665421        1  456888899999999987788999999999999999


Q ss_pred             hhhcCCCCceEEE
Q psy2960         389 MSIQGKSGVKYYI  401 (405)
Q Consensus       389 ~~~~~~~~gKvvl  401 (405)
                      .  .++..+|+++
T Consensus       299 ~--~~~~~~kvv~  309 (309)
T cd05289         299 E--SGHARGKVVL  309 (309)
T ss_pred             H--hCCCCCcEeC
Confidence            8  7777888874

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.9e-35  Score=279.58  Aligned_cols=275  Identities=23%  Similarity=0.347  Sum_probs=228.5

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||+|++++.+.  ..+++++.|.|++.++||+|||.++++|++|++...|.+.. ...|.++|+|++|+|+.+|++++.|
T Consensus         1 ~~~~~~~~~~~--~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~   77 (306)
T cd08258           1 MKALVKTGPGP--GNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDP-VETPVVLGHEFSGTIVEVGPDVEGW   77 (306)
T ss_pred             CeeEEEecCCC--CceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCc-CCCCeeeccceEEEEEEECCCcCcC
Confidence            67888877542  34899999999999999999999999999999998887532 2457899999999999999999999


Q ss_pred             CCCCEEEecCC---------------------------CCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHH
Q psy2960         153 AVGDHVIPDTQ---------------------------HLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRML  205 (405)
Q Consensus       153 ~~GdrV~~~~~---------------------------~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al  205 (405)
                      ++||+|++...                           ..|+|++|+.++...++++|+++++++|+ ++.++++||+++
T Consensus        78 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa-~~~~~~~a~~~l  156 (306)
T cd08258          78 KVGDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGTQADGGFAEYVLVPEESLHELPENLSLEAAA-LTEPLAVAVHAV  156 (306)
T ss_pred             CCCCEEEEccCcCCCCCCcchhCcCcccCCCCceeeecCCCceEEEEEcchHHeEECcCCCCHHHHH-hhchHHHHHHHH
Confidence            99999998631                           14899999999999999999999999887 777889999999


Q ss_pred             HhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChh--hHHH-HhhhcCCC
Q psy2960         206 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIP  282 (405)
Q Consensus       206 ~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~--d~~~-i~~~t~g~  282 (405)
                      ...+.+++|++|||.| +|++|++++|+|+.+|++++++..+.+  +++.+.++++|++++ +++  ++.. +.+.+.++
T Consensus       157 ~~~~~~~~g~~vlI~g-~g~~g~~~~~la~~~G~~v~~~~~~~~--~~~~~~~~~~g~~~~-~~~~~~~~~~l~~~~~~~  232 (306)
T cd08258         157 AERSGIRPGDTVVVFG-PGPIGLLAAQVAKLQGATVVVVGTEKD--EVRLDVAKELGADAV-NGGEEDLAELVNEITDGD  232 (306)
T ss_pred             HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEECCCCC--HHHHHHHHHhCCccc-CCCcCCHHHHHHHHcCCC
Confidence            8888999999999977 599999999999999999877743322  345677888999888 654  4555 77777778


Q ss_pred             CCcEEEECCCc-hhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHH
Q psy2960         283 KPKLALNCVGG-NSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTE  361 (405)
Q Consensus       283 g~Dvvld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  361 (405)
                      ++|++|||+|+ .....++++|+++|+++.+|........++...++.+++++.|+++++           .++++++++
T Consensus       233 ~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~-----------~~~~~~~~~  301 (306)
T cd08258         233 GADVVIECSGAVPALEQALELLRKGGRIVQVGIFGPLAASIDVERIIQKELSVIGSRSST-----------PASWETALR  301 (306)
T ss_pred             CCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccCCCCcccCHHHHhhcCcEEEEEecCc-----------hHhHHHHHH
Confidence            89999999975 455678999999999999997653334556666778999999999865           334778888


Q ss_pred             HHHcC
Q psy2960         362 MMRTG  366 (405)
Q Consensus       362 ~~~~g  366 (405)
                      ++++|
T Consensus       302 ~~~~~  306 (306)
T cd08258         302 LLASG  306 (306)
T ss_pred             HHhcC
Confidence            88765

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=100.00  E-value=5.9e-35  Score=272.85  Aligned_cols=287  Identities=23%  Similarity=0.345  Sum_probs=240.7

Q ss_pred             CeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCCCCCCEEEecCCCCCcccceEeecccceE
Q psy2960         101 HEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLM  180 (405)
Q Consensus       101 ~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~~GdrV~~~~~~~G~~a~~~~v~~~~~~  180 (405)
                      +||+||+.++++|++|++.+.|.++   .+|.++|||++|+|+++|++++.+++||+|++..  .|+|++|+.++.+.++
T Consensus         1 ~~v~i~v~~~~~~~~d~~~~~g~~~---~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~--~g~~~~~~~~~~~~~~   75 (293)
T cd05195           1 DEVEVEVKAAGLNFRDVLVALGLLP---GDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLA--PGAFATHVRVDARLVV   75 (293)
T ss_pred             CceEEEEEEEecCHHHHHHHhCCCC---CCCCccceeeeEEEEeecCCccCCCCCCEEEEEe--cCcccceEEechhheE
Confidence            5899999999999999999988652   4578999999999999999999999999999883  5899999999999999


Q ss_pred             EcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH
Q psy2960         181 KVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS  260 (405)
Q Consensus       181 ~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~  260 (405)
                      ++|+++++.+++.+++++.|+|.++.+...+++|++|+|+|++|++|++++|+|+.+|+++++++++.    ++.+.+++
T Consensus        76 ~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~----~~~~~~~~  151 (293)
T cd05195          76 KIPDSLSFEEAATLPVAYLTAYYALVDLARLQKGESVLIHAAAGGVGQAAIQLAQHLGAEVFATVGSE----EKREFLRE  151 (293)
T ss_pred             eCCCCCCHHHHhhchHHHHHHHHHHHHHhccCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeCCH----HHHHHHHH
Confidence            99999999999999999999999998888999999999999999999999999999999999887554    34566677


Q ss_pred             cC--CcEEeChhh--HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEeccCCCC-cccCcccccccCeEE
Q psy2960         261 LG--ADYVFTEEE--LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREP-VQIPTSAFIFKDITL  334 (405)
Q Consensus       261 lg--~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~-~~~~~~~~~~k~~~~  334 (405)
                      +|  ++.+++..+  +.+ +.+.+.+.++|+++||+|+.....++++++++|+++.+|...... ..+.. ..+.+++++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~-~~~~~~~~~  230 (293)
T cd05195         152 LGGPVDHIFSSRDLSFADGILRATGGRGVDVVLNSLSGELLRASWRCLAPFGRFVEIGKRDILSNSKLGM-RPFLRNVSF  230 (293)
T ss_pred             hCCCcceEeecCchhHHHHHHHHhCCCCceEEEeCCCchHHHHHHHhcccCceEEEeeccccccCCccch-hhhccCCeE
Confidence            77  677777543  445 777777889999999999987788899999999999998543321 12222 234467888


Q ss_pred             EEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEE
Q psy2960         335 RGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYI  401 (405)
Q Consensus       335 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl  401 (405)
                      ....+..+....+  ....+.+.++.++++++.+++..+..|+++++++||+.+.  .++..+|+|+
T Consensus       231 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--~~~~~~~ivv  293 (293)
T cd05195         231 SSVDLDQLARERP--ELLRELLREVLELLEAGVLKPLPPTVVPSASEIDAFRLMQ--SGKHIGKVVL  293 (293)
T ss_pred             EEEeHHHHhhhCh--HHHHHHHHHHHHHHHCCCcccCCCeeechhhHHHHHHHHh--cCCCCceecC
Confidence            8877655433222  4446678899999999999988888999999999999999  7888888874

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.3e-34  Score=275.01  Aligned_cols=306  Identities=25%  Similarity=0.321  Sum_probs=237.8

Q ss_pred             ccCCCCccc-eEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCC--CCCCCCCCccceEEEEEEEcCCCCCCCCC
Q psy2960          79 NQHGTPLRV-VTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPI--KPTLPAVPGFEGVGEVVEVGSDVSSLAVG  155 (405)
Q Consensus        79 ~~~g~~~~~-l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~p~~lG~E~~G~V~~vG~~v~~~~~G  155 (405)
                      +..+++... +.+.+.|.|+++++||+|++.++++|++|++...|.++.  ....|..+|||++|+|+++|++++++++|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~G   83 (319)
T cd08267           4 TRYGSPEVLLLLEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVG   83 (319)
T ss_pred             CCCCChhhhhhccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCC
Confidence            344444332 278889999999999999999999999999998876532  12346789999999999999999999999


Q ss_pred             CEEEecCC--CCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHH
Q psy2960         156 DHVIPDTQ--HLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQI  233 (405)
Q Consensus       156 drV~~~~~--~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiql  233 (405)
                      |+|++...  ..|+|++|+.++.+.++++|+++++++++.+++++.+||+++.....+++|++|+|+|++|++|++++++
T Consensus        84 d~V~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~l  163 (319)
T cd08267          84 DEVFGRLPPKGGGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRDAGKVKPGQRVLINGASGGVGTFAVQI  163 (319)
T ss_pred             CEEEEeccCCCCceeeEEEEechhheEECCCCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence            99998742  3589999999999999999999999999999999999999998877899999999999999999999999


Q ss_pred             HHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCCchhH--HHHHHhcccCCEEEE
Q psy2960         234 ARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSA--TNLLRTLVSKGVMVT  311 (405)
Q Consensus       234 a~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~~~~--~~~~~~l~~~G~~v~  311 (405)
                      |+.+|+++++++++     ++.+.++++|.+++++.+........+.+.++|+++||+|+...  ...+..++++|+++.
T Consensus       164 a~~~g~~v~~~~~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~~~l~~~g~~i~  238 (319)
T cd08267         164 AKALGAHVTGVCST-----RNAELVRSLGADEVIDYTTEDFVALTAGGEKYDVIFDAVGNSPFSLYRASLALKPGGRYVS  238 (319)
T ss_pred             HHHcCCEEEEEeCH-----HHHHHHHHcCCCEeecCCCCCcchhccCCCCCcEEEECCCchHHHHHHhhhccCCCCEEEE
Confidence            99999999888743     23567788999888875431111344556789999999995422  334445999999999


Q ss_pred             EeccCCCCcccC---cccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHH
Q psy2960         312 YGGMSREPVQIP---TSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNT  388 (405)
Q Consensus       312 ~g~~~~~~~~~~---~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~  388 (405)
                      +|..........   ..........+......      +  .  .+.+.+++++++++.+.+.++++|+++++++||+.+
T Consensus       239 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~~  308 (319)
T cd08267         239 VGGGPSGLLLVLLLLPLTLGGGGRRLKFFLAK------P--N--AEDLEQLAELVEEGKLKPVIDSVYPLEDAPEAYRRL  308 (319)
T ss_pred             eccccccccccccccchhhccccceEEEEEec------C--C--HHHHHHHHHHHHCCCeeeeeeeEEcHHHHHHHHHHH
Confidence            985432221111   01111122222222211      1  1  456888899999999988888999999999999999


Q ss_pred             hhhcCCCCceEEE
Q psy2960         389 MSIQGKSGVKYYI  401 (405)
Q Consensus       389 ~~~~~~~~gKvvl  401 (405)
                      .  +++..+|+++
T Consensus       309 ~--~~~~~~~vvv  319 (319)
T cd08267         309 K--SGRARGKVVI  319 (319)
T ss_pred             h--cCCCCCcEeC
Confidence            9  7788888874

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=100.00  E-value=1.4e-34  Score=270.17  Aligned_cols=233  Identities=19%  Similarity=0.213  Sum_probs=191.7

Q ss_pred             CCccceEEEEEEEcCCCC------CCCCCCEEEecCC---------------------------------CCCcccceEe
Q psy2960         133 VPGFEGVGEVVEVGSDVS------SLAVGDHVIPDTQ---------------------------------HLGTWRNYGK  173 (405)
Q Consensus       133 ~lG~E~~G~V~~vG~~v~------~~~~GdrV~~~~~---------------------------------~~G~~a~~~~  173 (405)
                      ++|||++|+|+++|++|+      ++++||||+..+.                                 .+|+|+||+.
T Consensus         1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~~~~~~~G~~aey~~   80 (280)
T TIGR03366         1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRKYGHEALDSGWPLSGGYAEHCH   80 (280)
T ss_pred             CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhhcCcccccCCccccccceeeEE
Confidence            589999999999999999      8999999976320                                 2489999999


Q ss_pred             eccc-ceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchH
Q psy2960         174 FNHD-VLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDID  252 (405)
Q Consensus       174 v~~~-~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~  252 (405)
                      +++. .++++|+++++++|+.+++++.|+|+++.. ....+|++|||+|+ |++|++++|+|+++|++++++++   ..+
T Consensus        81 v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al~~-~~~~~g~~VlV~G~-G~vG~~~~~~ak~~G~~~Vi~~~---~~~  155 (280)
T TIGR03366        81 LPAGTAIVPVPDDLPDAVAAPAGCATATVMAALEA-AGDLKGRRVLVVGA-GMLGLTAAAAAAAAGAARVVAAD---PSP  155 (280)
T ss_pred             ecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHHHh-ccCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEC---CCH
Confidence            9998 799999999999999999999999999976 56679999999987 99999999999999998444442   234


Q ss_pred             HHHHHHHHcCCcEEeChhhHHH-HhhhcCCCCCcEEEECCCchh-HHHHHHhcccCCEEEEEeccC-CCCcccCcccccc
Q psy2960         253 KLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCVGGNS-ATNLLRTLVSKGVMVTYGGMS-REPVQIPTSAFIF  329 (405)
Q Consensus       253 ~~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~Dvvld~~g~~~-~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~  329 (405)
                      ++++.++++|++.++++++..+ +.+.+.+.++|++|||+|... +..++++++++|+++.+|... ..+.+++...++.
T Consensus       156 ~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~i~~~~~~~  235 (280)
T TIGR03366       156 DRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGPVALDPEQVVR  235 (280)
T ss_pred             HHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCCCceeeCHHHHHh
Confidence            5688999999999998766545 777787889999999998765 567899999999999999653 2344566777888


Q ss_pred             cCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcC--ccc--CCcceeeehhhH
Q psy2960         330 KDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTG--KLA--APAHKFVTLKNF  381 (405)
Q Consensus       330 k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~l~--~~~~~~~~~~~~  381 (405)
                      |++++.|++...           .+.++++++++.++  ++.  +.++++||++|+
T Consensus       236 ~~~~i~g~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~it~~~~l~~~  280 (280)
T TIGR03366       236 RWLTIRGVHNYE-----------PRHLDQAVRFLAANGQRFPFEELVGKPFPLADV  280 (280)
T ss_pred             CCcEEEecCCCC-----------HHHHHHHHHHHHhhCCCCCHHHHhhcccccccC
Confidence            999999986532           23478888888874  443  457899999874

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>smart00829 PKS_ER Enoylreductase

Probab=100.00  E-value=1.5e-33  Score=262.97  Aligned_cols=281  Identities=25%  Similarity=0.377  Sum_probs=233.5

Q ss_pred             EEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCCCCCCEEEecCCCCCcccceEeecccceEEcCC
Q psy2960         105 VKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPK  184 (405)
Q Consensus       105 Vkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~  184 (405)
                      ||+.++++|++|++...|.++    .|.++|||++|+|+++|++++.+++||+|++..  .|+|++|+.++.+.++++|+
T Consensus         2 i~v~~~~i~~~d~~~~~g~~~----~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~--~g~~~~~~~~~~~~~~~~p~   75 (288)
T smart00829        2 VEVRAAGLNFRDVLIALGLLP----GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGLA--PGSFATYVRTDARLVVPIPD   75 (288)
T ss_pred             eeEEEEecCHHHHHHhcCCCC----CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEEc--CCceeeEEEccHHHeEECCC
Confidence            899999999999999988654    267899999999999999999999999999883  48999999999999999999


Q ss_pred             CCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC-
Q psy2960         185 DIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA-  263 (405)
Q Consensus       185 ~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~-  263 (405)
                      ++++++++++++++.|+|+++...+.+++|++|+|+|++|++|++++++|+.+|+++++++++.+    +++.++++|+ 
T Consensus        76 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~----~~~~~~~~g~~  151 (288)
T smart00829       76 GLSFEEAATVPVVFLTAYYALVDLARLRPGESVLIHAAAGGVGQAAIQLAQHLGAEVFATAGSPE----KRDFLRELGIP  151 (288)
T ss_pred             CCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEeCCHH----HHHHHHHcCCC
Confidence            99999999999999999999977789999999999999999999999999999999988876543    4667788998 


Q ss_pred             -cEEeChh--hHHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEeccCCC-CcccCcccccccCeEEEEEe
Q psy2960         264 -DYVFTEE--ELRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSRE-PVQIPTSAFIFKDITLRGHW  338 (405)
Q Consensus       264 -~~v~~~~--d~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~k~~~~~g~~  338 (405)
                       +.+++..  ++.+ +.+.+.++++|+++|++|+.....++++++++|+++.+|..... ...++... +.+++++.+..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~-~~~~~~~~~~~  230 (288)
T smart00829      152 DDHIFSSRDLSFADEILRATGGRGVDVVLNSLAGEFLDASLRCLAPGGRFVEIGKRDIRDNSQLGMAP-FRRNVSYHAVD  230 (288)
T ss_pred             hhheeeCCCccHHHHHHHHhCCCCcEEEEeCCCHHHHHHHHHhccCCcEEEEEcCcCCccccccchhh-hcCCceEEEEE
Confidence             7777654  3444 77777777899999999987777889999999999999854321 12233323 45788888877


Q ss_pred             cchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEE
Q psy2960         339 MTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYI  401 (405)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl  401 (405)
                      +..+. ..  +....+.+.++.++++++.+.+...+.|++++++++++.+.  .++..+|+++
T Consensus       231 ~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ivv  288 (288)
T smart00829      231 LDALE-EG--PDRIRELLAEVLELFAEGVLRPLPVTVFPISDVEDAFRYMQ--QGKHIGKVVL  288 (288)
T ss_pred             HHHhh-cC--hHHHHHHHHHHHHHHHCCCccCcCceEEcHHHHHHHHHHHh--cCCCcceEeC
Confidence            65432 11  23345567888999999998877778899999999999998  7777788874

Enoylreductase in Polyketide synthases.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=8e-32  Score=249.59  Aligned_cols=234  Identities=31%  Similarity=0.452  Sum_probs=198.3

Q ss_pred             eEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCCCCCCEEEecCC------------------
Q psy2960         102 EVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQ------------------  163 (405)
Q Consensus       102 eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~~GdrV~~~~~------------------  163 (405)
                      ||+|+|.++++|+.|++...|..+....+|.++|||++|+|+++|++++.|++||+|++...                  
T Consensus         1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~   80 (271)
T cd05188           1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRELCPGGGI   80 (271)
T ss_pred             CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHhhCCCCCE
Confidence            68999999999999999998876533456889999999999999999999999999998742                  


Q ss_pred             ----CCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC
Q psy2960         164 ----HLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL  239 (405)
Q Consensus       164 ----~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~  239 (405)
                          ..|+|++|+.++.+.++++|+++++++++.++.++.|||+++.....+++|++|||+|+++ +|++++++++..|+
T Consensus        81 ~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~  159 (271)
T cd05188          81 LGEGLDGGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGG-VGLLAAQLAKAAGA  159 (271)
T ss_pred             eccccCCcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCC
Confidence                2689999999999999999999999999999999999999998877779999999999966 99999999999999


Q ss_pred             cEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCCCCCcEEEECCCc-hhHHHHHHhcccCCEEEEEecc
Q psy2960         240 KTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIPKPKLALNCVGG-NSATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       240 ~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~-~~~~~~~~~l~~~G~~v~~g~~  315 (405)
                      +++++++++    .+.+.++++|++++++..+  ... +. .+.+.++|+++|++++ .....++++++++|+++.+|..
T Consensus       160 ~v~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~~  234 (271)
T cd05188         160 RVIVTDRSD----EKLELAKELGADHVIDYKEEDLEEELR-LTGGGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGT  234 (271)
T ss_pred             eEEEEcCCH----HHHHHHHHhCCceeccCCcCCHHHHHH-HhcCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEEccC
Confidence            998887553    3466778899988887654  333 44 5667789999999998 6667789999999999999965


Q ss_pred             CCCCcccCcccccccCeEEEEEecch
Q psy2960         316 SREPVQIPTSAFIFKDITLRGHWMTR  341 (405)
Q Consensus       316 ~~~~~~~~~~~~~~k~~~~~g~~~~~  341 (405)
                      ............+.+++++.++..+.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (271)
T cd05188         235 SGGPPLDDLRRLLFKELTIIGSTGGT  260 (271)
T ss_pred             CCCCCcccHHHHHhcceEEEEeecCC
Confidence            44332222445677999999988754

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>KOG1196|consensus

Probab=100.00  E-value=1.6e-30  Score=230.15  Aligned_cols=315  Identities=21%  Similarity=0.272  Sum_probs=241.2

Q ss_pred             ceeEEEEccC--CCCc-cceEee--eecC-CCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCc----cceEEE
Q psy2960          72 LANKLVYNQH--GTPL-RVVTVE--NETL-NSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG----FEGVGE  141 (405)
Q Consensus        72 ~~~a~~~~~~--g~~~-~~l~~~--~~~~-p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG----~E~~G~  141 (405)
                      +.++|++..+  |-|. +.+.+.  +.++ .++++++||||..|-+..|.-...+.-..+.....|+.+|    ..++|+
T Consensus         3 ~nkqvvLk~y~~g~P~~~d~~~~~~~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g~GV~k   82 (343)
T KOG1196|consen    3 TNKQVILKNYVTGFPTESDFEFTTTTVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDGFGVAK   82 (343)
T ss_pred             cccEEEEeccCCCCCccccceeeeeeecccCCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecCCceEE
Confidence            4566666652  3332 233333  3333 3569999999999999998766544432222112344444    267899


Q ss_pred             EEEEcCCCCCCCCCCEEEecCCCCCcccceEeecccc--eEEcCC--CCChhh-hccCCCcHHHHHHHHHhhcCCCCCCE
Q psy2960         142 VVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDV--LMKVPK--DIALTE-ISGITSNPCTAYRMLKDYNSLSPGDV  216 (405)
Q Consensus       142 V~~vG~~v~~~~~GdrV~~~~~~~G~~a~~~~v~~~~--~~~iP~--~~s~~~-Aa~~~~~~~ta~~al~~~~~~~~g~~  216 (405)
                      |++.  +-+++++||.|.++.    +|.||.+++...  .+++|.  +.++.. ..++..+.+|||.++++.+..++|++
T Consensus        83 Vi~S--~~~~~~~GD~v~g~~----gWeeysii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk~geT  156 (343)
T KOG1196|consen   83 VIDS--GHPNYKKGDLVWGIV----GWEEYSVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPKKGET  156 (343)
T ss_pred             EEec--CCCCCCcCceEEEec----cceEEEEecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCCCCCE
Confidence            9994  567899999999993    799999998754  344443  333332 35677789999999999999999999


Q ss_pred             EEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHH-HHcCCcEEeChhh---HHHHhhhcCCCCCcEEEECCC
Q psy2960         217 VIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVFTEEE---LRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       217 VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~-~~lg~~~v~~~~d---~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      |+|.||+|++|+.+.|+|+.+||+|++.++|+|+.    ..+ .++|.|..+|+.+   ..+..+.+-..|+|+.||.+|
T Consensus       157 v~VSaAsGAvGql~GQ~Ak~~Gc~VVGsaGS~EKv----~ll~~~~G~d~afNYK~e~~~~~aL~r~~P~GIDiYfeNVG  232 (343)
T KOG1196|consen  157 VFVSAASGAVGQLVGQFAKLMGCYVVGSAGSKEKV----DLLKTKFGFDDAFNYKEESDLSAALKRCFPEGIDIYFENVG  232 (343)
T ss_pred             EEEeeccchhHHHHHHHHHhcCCEEEEecCChhhh----hhhHhccCCccceeccCccCHHHHHHHhCCCcceEEEeccC
Confidence            99999999999999999999999999999998763    444 3679999999854   344333355789999999999


Q ss_pred             chhHHHHHHhcccCCEEEEEeccCCCCccc-----CcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCc
Q psy2960         293 GNSATNLLRTLVSKGVMVTYGGMSREPVQI-----PTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGK  367 (405)
Q Consensus       293 ~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~-----~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  367 (405)
                      +..+.+.+..|+..||++.+|..+..+.+.     +....+.|++++.|+...++.      +...+.++.+..++++|+
T Consensus       233 G~~lDavl~nM~~~gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqgflv~d~~------d~~~k~ld~l~~~ikegK  306 (343)
T KOG1196|consen  233 GKMLDAVLLNMNLHGRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQGFLVSDYL------DKYPKFLDFLLPYIKEGK  306 (343)
T ss_pred             cHHHHHHHHhhhhccceEeeeeehhccccCCccccchhhheeeeEEeeeEEeechh------hhhHHHHHHHHHHHhcCc
Confidence            999999999999999999999876443322     224567899999998876654      445678899999999999


Q ss_pred             ccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEec
Q psy2960         368 LAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       368 l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                      |+-..+..-.|++.+.||.-|.  +|+..||.++++.
T Consensus       307 I~y~edi~~Glen~P~A~vglf--~GkNvGKqiv~va  341 (343)
T KOG1196|consen  307 ITYVEDIADGLENGPSALVGLF--HGKNVGKQLVKVA  341 (343)
T ss_pred             eEEehhHHHHHhccHHHHHHHh--ccCcccceEEEee
Confidence            9987666778999999999999  9999999999874

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.97  E-value=1.4e-30  Score=242.77  Aligned_cols=259  Identities=20%  Similarity=0.286  Sum_probs=203.1

Q ss_pred             ccCCCCCCCCCCCccceEEEEEEEcCCCCCCCCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHH
Q psy2960         122 GVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTA  201 (405)
Q Consensus       122 g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta  201 (405)
                      |.+|.  ++|.++|||++|+|+++|++++++++||+|+++    +.|++|+.++.+.++++|+++++++++.+ ++++||
T Consensus        14 ~~~~~--~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~----~~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta   86 (277)
T cd08255          14 GTEKL--PLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCF----GPHAERVVVPANLLVPLPDGLPPERAALT-ALAATA   86 (277)
T ss_pred             cCccC--cCCcccCcceeEEEEEeCCCCCCCCCCCEEEec----CCcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHH
Confidence            55555  478999999999999999999999999999988    47999999999999999999999999998 789999


Q ss_pred             HHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCcchHHHHHHHHHcC-CcEEeChhhHHHHhhhc
Q psy2960         202 YRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLG-ADYVFTEEELRNISRDA  279 (405)
Q Consensus       202 ~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~~~~~~~~~~~~lg-~~~v~~~~d~~~i~~~t  279 (405)
                      |+++. .+++++|++|||+|+ |++|++++++|+++|++ ++++.+++    ++++.++++| ++.+++..+     ..+
T Consensus        87 ~~~~~-~~~~~~g~~vlI~g~-g~vg~~~i~~a~~~g~~~vi~~~~~~----~~~~~~~~~g~~~~~~~~~~-----~~~  155 (277)
T cd08255          87 LNGVR-DAEPRLGERVAVVGL-GLVGLLAAQLAKAAGAREVVGVDPDA----ARRELAEALGPADPVAADTA-----DEI  155 (277)
T ss_pred             HHHHH-hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCcEEEECCCH----HHHHHHHHcCCCccccccch-----hhh
Confidence            99986 589999999999975 99999999999999999 87776543    3466788888 565554322     123


Q ss_pred             CCCCCcEEEECCCc-hhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccH-HHHHHHHH
Q psy2960         280 SIPKPKLALNCVGG-NSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKES-AERKSMMN  357 (405)
Q Consensus       280 ~g~g~Dvvld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~-~~~~~~~~  357 (405)
                      .+.++|++|||++. .....++++++++|+++.+|..... .......+..+.+++.+..+..+....+.+ ....+.++
T Consensus       156 ~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (277)
T cd08255         156 GGRGADVVIEASGSPSALETALRLLRDRGRVVLVGWYGLK-PLLLGEEFHFKRLPIRSSQVYGIGRYDRPRRWTEARNLE  234 (277)
T ss_pred             cCCCCCEEEEccCChHHHHHHHHHhcCCcEEEEEeccCCC-ccccHHHHHhccCeEEeecccccccccccccccccccHH
Confidence            46689999999885 4556789999999999999865433 111122344466788887665432222110 11235688


Q ss_pred             HHHHHHHcCcccCCcceeeehhhHHHHHHHHhhhcC-CCCceEEE
Q psy2960         358 ELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQG-KSGVKYYI  401 (405)
Q Consensus       358 ~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~-~~~gKvvl  401 (405)
                      ++++++++|.+++.+.++|+++++++||+.+.  ++ ....|+++
T Consensus       235 ~~~~l~~~~~l~~~~~~~~~~~~~~~a~~~~~--~~~~~~~k~~~  277 (277)
T cd08255         235 EALDLLAEGRLEALITHRVPFEDAPEAYRLLF--EDPPECLKVVL  277 (277)
T ss_pred             HHHHHHHcCCccccccCccCHHHHHHHHHHHH--cCCccceeeeC
Confidence            89999999999888889999999999999998  54 45677764

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=99.78  E-value=9e-19  Score=139.42  Aligned_cols=83  Identities=34%  Similarity=0.494  Sum_probs=71.3

Q ss_pred             CCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCCCCCCEEEecC-----------------
Q psy2960         100 KHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDT-----------------  162 (405)
Q Consensus       100 ~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~~GdrV~~~~-----------------  162 (405)
                      |+||||||+++|||++|++.+.|.......+|.++|||++|+|+++|+++++|++||||++.+                 
T Consensus         1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~   80 (109)
T PF08240_consen    1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNL   80 (109)
T ss_dssp             TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGG
T ss_pred             CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcccc
Confidence            689999999999999999999995444457899999999999999999999999999999853                 


Q ss_pred             ---------CCCCcccceEeecccceEEc
Q psy2960         163 ---------QHLGTWRNYGKFNHDVLMKV  182 (405)
Q Consensus       163 ---------~~~G~~a~~~~v~~~~~~~i  182 (405)
                               ..+|+|+||+.+++++++|+
T Consensus        81 c~~~~~~g~~~~G~~aey~~v~~~~~~~v  109 (109)
T PF08240_consen   81 CPNPEVLGLGLDGGFAEYVVVPARNLVPV  109 (109)
T ss_dssp             TTTBEETTTSSTCSSBSEEEEEGGGEEEE
T ss_pred             CCCCCEeEcCCCCcccCeEEEehHHEEEC
Confidence                     23699999999999999885

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=99.72  E-value=4.9e-17  Score=133.72  Aligned_cols=113  Identities=27%  Similarity=0.472  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCCCCCcEEEECCC-chhHHHHH
Q psy2960         225 ACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIPKPKLALNCVG-GNSATNLL  300 (405)
Q Consensus       225 ~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g-~~~~~~~~  300 (405)
                      |+|++++|+|+++|++++++.++    +.+++.++++|+++++++++  +.+ +++.+++.++|+||||+| .+.+..++
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~----~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~   76 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRS----EEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAI   76 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESS----HHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHH
T ss_pred             ChHHHHHHHHHHcCCEEEEEECC----HHHHHHHHhhcccccccccccccccccccccccccceEEEEecCcHHHHHHHH
Confidence            68999999999999999988754    45689999999999998754  666 999998899999999999 56667889


Q ss_pred             HhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecch
Q psy2960         301 RTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTR  341 (405)
Q Consensus       301 ~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~  341 (405)
                      ++++++|+++.+|........++...++.+++++.|++.++
T Consensus        77 ~~l~~~G~~v~vg~~~~~~~~~~~~~~~~~~~~i~g~~~~~  117 (130)
T PF00107_consen   77 KLLRPGGRIVVVGVYGGDPISFNLMNLMFKEITIRGSWGGS  117 (130)
T ss_dssp             HHEEEEEEEEEESSTSTSEEEEEHHHHHHTTEEEEEESSGG
T ss_pred             HHhccCCEEEEEEccCCCCCCCCHHHHHhCCcEEEEEccCC
Confidence            99999999999997765666778888999999999999875

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A

Probab=99.53  E-value=5e-15  Score=121.22  Aligned_cols=124  Identities=27%  Similarity=0.373  Sum_probs=81.2

Q ss_pred             cCCcEEeChhhHHHHhhhcCCCCCcEEEECCC--chhH-HHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEE
Q psy2960         261 LGADYVFTEEELRNISRDASIPKPKLALNCVG--GNSA-TNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGH  337 (405)
Q Consensus       261 lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g--~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~  337 (405)
                      ||+++++|+++.. +   +.+.++|+||||+|  ++.. ..++++| ++|+++.++.      .........+...+...
T Consensus         1 LGAd~vidy~~~~-~---~~~~~~D~ViD~~g~~~~~~~~~~~~~l-~~G~~v~i~~------~~~~~~~~~~~~~~~~~   69 (127)
T PF13602_consen    1 LGADEVIDYRDTD-F---AGPGGVDVVIDTVGQTGESLLDASRKLL-PGGRVVSIGG------DLPSFARRLKGRSIRYS   69 (127)
T ss_dssp             CT-SEEEETTCSH-H---HTTS-EEEEEESS-CCHHHCGGGCCCTE-EEEEEEEE-S------HHHHHHHHHHCHHCEEE
T ss_pred             CCcCEEecCCCcc-c---cCCCCceEEEECCCCccHHHHHHHHHHC-CCCEEEEECC------cccchhhhhcccceEEE
Confidence            6999999887422 3   44789999999999  6555 4556888 9999999984      11111111233344444


Q ss_pred             ecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEE
Q psy2960         338 WMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYI  401 (405)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl  401 (405)
                      .+......    ....+.++++.+++++|+|+|.+.++||++++++|++.++  ++++.||+||
T Consensus        70 ~~~~~~~~----~~~~~~l~~l~~l~~~G~l~~~i~~~f~l~~~~~A~~~l~--~~~~~GKvVl  127 (127)
T PF13602_consen   70 FLFSVDPN----AIRAEALEELAELVAEGKLKPPIDRVFPLEEAPEAHERLE--SGHARGKVVL  127 (127)
T ss_dssp             CCC-H--H----HHHHHHHHHHHHHHHTTSS---EEEEEEGGGHHHHHHHHH--CT--SSEEEE
T ss_pred             EEEecCCC----chHHHHHHHHHHHHHCCCeEEeeccEECHHHHHHHHHHHH--hCCCCCeEeC
Confidence            43321100    1235669999999999999999999999999999999999  9999999997

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.37  E-value=1.3e-11  Score=119.21  Aligned_cols=175  Identities=13%  Similarity=0.101  Sum_probs=127.9

Q ss_pred             HHHHHHhhcC-CCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhc
Q psy2960         201 AYRMLKDYNS-LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDA  279 (405)
Q Consensus       201 a~~al~~~~~-~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t  279 (405)
                      .+.++.+..+ ..+|++|+|.|+ |.+|+.+++.++.+|++|+++-    ..+.+++.++.+|++.+ +.++.  +    
T Consensus       188 ~~~~i~r~t~~~l~GktVvViG~-G~IG~~va~~ak~~Ga~ViV~d----~d~~R~~~A~~~G~~~~-~~~e~--v----  255 (413)
T cd00401         188 LIDGIKRATDVMIAGKVAVVAGY-GDVGKGCAQSLRGQGARVIVTE----VDPICALQAAMEGYEVM-TMEEA--V----  255 (413)
T ss_pred             hHHHHHHhcCCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEE----CChhhHHHHHhcCCEEc-cHHHH--H----
Confidence            3455544334 368999999999 9999999999999999877753    23456788889998544 22111  2    


Q ss_pred             CCCCCcEEEECCCchhH-HHH-HHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHH
Q psy2960         280 SIPKPKLALNCVGGNSA-TNL-LRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMN  357 (405)
Q Consensus       280 ~g~g~Dvvld~~g~~~~-~~~-~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~  357 (405)
                        .++|+|++|+|.... ... +++++++|+++.+|..   +.+++...+..+++++.++..+..          ...++
T Consensus       256 --~~aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG~~---~~eId~~~L~~~el~i~g~~~~~~----------~~~~~  320 (413)
T cd00401         256 --KEGDIFVTTTGNKDIITGEHFEQMKDGAIVCNIGHF---DVEIDVKGLKENAVEVVNIKPQVD----------RYELP  320 (413)
T ss_pred             --cCCCEEEECCCCHHHHHHHHHhcCCCCcEEEEeCCC---CCccCHHHHHhhccEEEEccCCcc----------eEEcC
Confidence              257999999998765 344 8999999999999943   446777778889999998775421          01233


Q ss_pred             --HHHHHHHcCcc-c--CCccee-----eehh-hHHHHHHHHhhhcCC-CCceEEEEec
Q psy2960         358 --ELTEMMRTGKL-A--APAHKF-----VTLK-NFQEALMNTMSIQGK-SGVKYYIDFR  404 (405)
Q Consensus       358 --~~~~~~~~g~l-~--~~~~~~-----~~~~-~~~~A~~~~~~~~~~-~~gKvvl~~~  404 (405)
                        +.+.++++|++ .  +.+++.     |+|+ |+.++|+.+.  ++. ...|+++.++
T Consensus       321 ~g~aI~LLa~Grlvnl~~~~gH~~~vmd~sf~~q~l~a~~l~~--~~~~~~~kV~~~p~  377 (413)
T cd00401         321 DGRRIILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWT--NRDKYEVGVYFLPK  377 (413)
T ss_pred             CcchhhhhhCcCCCCCcccCCCccceechhHHHHHHHHHHHHh--cCCcCCCcEEECCH
Confidence              57899999998 3  446677     8899 9999999998  544 3467776653

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=99.34  E-value=3.2e-11  Score=119.40  Aligned_cols=246  Identities=15%  Similarity=0.173  Sum_probs=145.1

Q ss_pred             CeEEEEEEEe-ecChhhhhhhc-ccCCCCCCCCCCCccceEEEEEEEcCC----CCCCCCCCEEEecCCCCCcccc----
Q psy2960         101 HEVVVKMLVA-PVNPADINTIQ-GVYPIKPTLPAVPGFEGVGEVVEVGSD----VSSLAVGDHVIPDTQHLGTWRN----  170 (405)
Q Consensus       101 ~eVlVkv~a~-gi~~~D~~~~~-g~~~~~~~~p~~lG~E~~G~V~~vG~~----v~~~~~GdrV~~~~~~~G~~a~----  170 (405)
                      .+|+|+--|. +.+++|-.+.. |..-.. . .-+..   +-+|..|.+-    +..++.|..++++... ..-.+    
T Consensus        31 ~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~-~-~~v~~---~diilkV~~P~~~e~~~l~~g~~li~~l~p-~~~~~l~~~  104 (509)
T PRK09424         31 FEVVVESGAGQLASFDDAAYREAGAEIVD-G-AAVWQ---SDIILKVNAPSDDEIALLREGATLVSFIWP-AQNPELLEK  104 (509)
T ss_pred             CEEEEeCCCCcCCCCCHHHHHHCCCEEec-C-ccccc---CCEEEEeCCCCHHHHHhcCCCCEEEEEeCc-ccCHHHHHH
Confidence            5677776653 55777866554 421110 1 11222   4556666443    2468999999988532 11111    


Q ss_pred             -----eEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHh----h----------cCCCCCCEEEEeCCCcHHHHHHH
Q psy2960         171 -----YGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKD----Y----------NSLSPGDVVIQNGANSACGQNVI  231 (405)
Q Consensus       171 -----~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~----~----------~~~~~g~~VLI~ga~G~vG~~ai  231 (405)
                           ...+.-+.+-++.+.-++.  +.-+.+-...|.++..    .          ++..+|++|+|.|+ |.+|++++
T Consensus       105 l~~~~it~ia~e~vpr~sraq~~d--~lssma~IAGy~Av~~aa~~~~~~~~g~~taaG~~pg~kVlViGa-G~iGL~Ai  181 (509)
T PRK09424        105 LAARGVTVLAMDAVPRISRAQSLD--ALSSMANIAGYRAVIEAAHEFGRFFTGQITAAGKVPPAKVLVIGA-GVAGLAAI  181 (509)
T ss_pred             HHHcCCEEEEeecccccccCCCcc--cccchhhhhHHHHHHHHHHHhcccCCCceeccCCcCCCEEEEECC-cHHHHHHH
Confidence                 1111222232222221111  1111222333443322    1          13468999999999 99999999


Q ss_pred             HHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChh---------------hHHH-Hhhh-cC-CCCCcEEEECCC
Q psy2960         232 QIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEE---------------ELRN-ISRD-AS-IPKPKLALNCVG  292 (405)
Q Consensus       232 qla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~---------------d~~~-i~~~-t~-g~g~Dvvld~~g  292 (405)
                      +.|+.+|++|+++    +.++++++.++++|++.+ +|..               ++.+ ..+. ++ .+++|+||+|+|
T Consensus       182 ~~Ak~lGA~V~a~----D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag  257 (509)
T PRK09424        182 GAAGSLGAIVRAF----DTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTAL  257 (509)
T ss_pred             HHHHHCCCEEEEE----eCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCC
Confidence            9999999976666    445677899999999855 5432               1111 2222 22 257999999999


Q ss_pred             chh-------HHHHHHhcccCCEEEEEeccCCCC--cccCcccccc-cCeEEEEEecchhhhhhccHHHHHHHHHHHHHH
Q psy2960         293 GNS-------ATNLLRTLVSKGVMVTYGGMSREP--VQIPTSAFIF-KDITLRGHWMTRWQKENKESAERKSMMNELTEM  362 (405)
Q Consensus       293 ~~~-------~~~~~~~l~~~G~~v~~g~~~~~~--~~~~~~~~~~-k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (405)
                      .+.       ..++++.++++|+++.+|...+.+  .+.+...++. +++++.|++...           .+......++
T Consensus       258 ~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~Gv~n~P-----------~~~p~~As~l  326 (509)
T PRK09424        258 IPGKPAPKLITAEMVASMKPGSVIVDLAAENGGNCELTVPGEVVVTDNGVTIIGYTDLP-----------SRLPTQSSQL  326 (509)
T ss_pred             CCcccCcchHHHHHHHhcCCCCEEEEEccCCCCCcccccCccceEeECCEEEEEeCCCc-----------hhHHHHHHHH
Confidence            632       367899999999999999643333  3444455665 899999976321           1222346677


Q ss_pred             HHcCcccC
Q psy2960         363 MRTGKLAA  370 (405)
Q Consensus       363 ~~~g~l~~  370 (405)
                      +.++.++.
T Consensus       327 la~~~i~l  334 (509)
T PRK09424        327 YGTNLVNL  334 (509)
T ss_pred             HHhCCccH
Confidence            77776654

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.50  E-value=5.5e-06  Score=82.25  Aligned_cols=122  Identities=15%  Similarity=0.204  Sum_probs=83.8

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eCh---------------hhHHH-
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTE---------------EELRN-  274 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~---------------~d~~~-  274 (405)
                      .++++|+|.|+ |.+|++++++|+.+|++|+++..    +..+++.++++|++.+ ++.               +++.+ 
T Consensus       162 vp~akVlViGa-G~iGl~Aa~~ak~lGA~V~v~d~----~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~  236 (511)
T TIGR00561       162 VPPAKVLVIGA-GVAGLAAIGAANSLGAIVRAFDT----RPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAA  236 (511)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeC----CHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHH
Confidence            46799999999 99999999999999999777643    3446888889998763 232               12222 


Q ss_pred             HhhhcC--CCCCcEEEECC---Cchh----HHHHHHhcccCCEEEEEeccCCCCcccC-cccccc--cCeEEEEEe
Q psy2960         275 ISRDAS--IPKPKLALNCV---GGNS----ATNLLRTLVSKGVMVTYGGMSREPVQIP-TSAFIF--KDITLRGHW  338 (405)
Q Consensus       275 i~~~t~--g~g~Dvvld~~---g~~~----~~~~~~~l~~~G~~v~~g~~~~~~~~~~-~~~~~~--k~~~~~g~~  338 (405)
                      .++.+.  ..++|+||+|+   |...    ..+.++.+++|+.++.++...+.+.... +...+.  .++++.+..
T Consensus       237 ~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~GGn~E~t~p~~~~~~~~GV~~~gv~  312 (511)
T TIGR00561       237 EMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQGGNCEYTKPGEVYTTENQVKVIGYT  312 (511)
T ss_pred             HHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCCCCCEEEecCceEEEecCCEEEEeeC
Confidence            222222  46799999999   6432    3567899999999999986555443321 112222  247777754

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.35  E-value=3.7e-06  Score=78.08  Aligned_cols=173  Identities=17%  Similarity=0.202  Sum_probs=93.8

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc--EEEEecCCcchHHHHHHHHHcCCcEEe-ChhhHHHHhhhcCCCCCc
Q psy2960         209 NSLSPGDVVIQNGANSACGQNVIQIARHWGLK--TINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPK  285 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~--v~~~~~~~~~~~~~~~~~~~lg~~~v~-~~~d~~~i~~~t~g~g~D  285 (405)
                      +++++|++||..|+ |+ |..++++++..|..  ++++-.+++..+...+.....|.+.+- -..++..+. . ....+|
T Consensus        73 ~~~~~g~~VLDiG~-G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~-~-~~~~fD  148 (272)
T PRK11873         73 AELKPGETVLDLGS-GG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP-V-ADNSVD  148 (272)
T ss_pred             ccCCCCCEEEEeCC-CC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC-C-CCCcee
Confidence            57889999999998 55 88888889888764  666543333322222233334543321 112222211 1 134799


Q ss_pred             EEEECC------C-chhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHH
Q psy2960         286 LALNCV------G-GNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNE  358 (405)
Q Consensus       286 vvld~~------g-~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~  358 (405)
                      +|+...      . ...+..+.+.|+|+|+++..+.....+  .+  ..+.+...+.+......           ...++
T Consensus       149 ~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~--~~--~~~~~~~~~~~~~~~~~-----------~~~~e  213 (272)
T PRK11873        149 VIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGE--LP--EEIRNDAELYAGCVAGA-----------LQEEE  213 (272)
T ss_pred             EEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCC--CC--HHHHHhHHHHhccccCC-----------CCHHH
Confidence            998543      1 134567889999999999876433221  11  11112222221111110           01233


Q ss_pred             HHHHHHc-Cc--ccCCcceeeehhhHHHHHHHH--hhhcCCCCceEEEE
Q psy2960         359 LTEMMRT-GK--LAAPAHKFVTLKNFQEALMNT--MSIQGKSGVKYYID  402 (405)
Q Consensus       359 ~~~~~~~-g~--l~~~~~~~~~~~~~~~A~~~~--~~~~~~~~gKvvl~  402 (405)
                      +.+++++ |-  +.......++++++.++++.+  .  .++..++.+..
T Consensus       214 ~~~~l~~aGf~~v~i~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~  260 (272)
T PRK11873        214 YLAMLAEAGFVDITIQPKREYRIPDAREFLEDWGIA--PGRQLDGYIVS  260 (272)
T ss_pred             HHHHHHHCCCCceEEEeccceecccHHHHHHHhccc--cccccCceEEE
Confidence            4455554 32  223345678899999999988  6  55555555543

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.20  E-value=2.7e-05  Score=75.90  Aligned_cols=102  Identities=15%  Similarity=0.186  Sum_probs=73.0

Q ss_pred             HHHHHHhhcCCC-CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhc
Q psy2960         201 AYRMLKDYNSLS-PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDA  279 (405)
Q Consensus       201 a~~al~~~~~~~-~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t  279 (405)
                      +|.++....++. .|++|+|.|. |.+|..+++.++.+|++|+++-.++    .+...+...|++ +.+.   .++.   
T Consensus       198 ~~~ai~rat~~~l~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp----~ra~~A~~~G~~-v~~l---~eal---  265 (425)
T PRK05476        198 LLDGIKRATNVLIAGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDP----ICALQAAMDGFR-VMTM---EEAA---  265 (425)
T ss_pred             hHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCc----hhhHHHHhcCCE-ecCH---HHHH---
Confidence            566666543554 8999999999 9999999999999999877764332    223344455664 3332   2211   


Q ss_pred             CCCCCcEEEECCCchhHH--HHHHhcccCCEEEEEeccC
Q psy2960         280 SIPKPKLALNCVGGNSAT--NLLRTLVSKGVMVTYGGMS  316 (405)
Q Consensus       280 ~g~g~Dvvld~~g~~~~~--~~~~~l~~~G~~v~~g~~~  316 (405)
                        .++|+|++|+|.....  ..+..+++++.++.+|..+
T Consensus       266 --~~aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG~~d  302 (425)
T PRK05476        266 --ELGDIFVTATGNKDVITAEHMEAMKDGAILANIGHFD  302 (425)
T ss_pred             --hCCCEEEECCCCHHHHHHHHHhcCCCCCEEEEcCCCC
Confidence              2689999999986653  4688999999999998654

>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function

Probab=98.16  E-value=0.0006  Score=63.45  Aligned_cols=244  Identities=16%  Similarity=0.170  Sum_probs=132.9

Q ss_pred             CCCCCccceEEEEEEEcCCCCCCCCCCEEEecCCC------------CC--------------cccceEeecccceEEcC
Q psy2960         130 LPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQH------------LG--------------TWRNYGKFNHDVLMKVP  183 (405)
Q Consensus       130 ~p~~lG~E~~G~V~~vG~~v~~~~~GdrV~~~~~~------------~G--------------~~a~~~~v~~~~~~~iP  183 (405)
                      ..++|=.-+ ++|++  +.+.++.+|.||.++.+.            .+              .|.+|..+..+..+.  
T Consensus        30 wG~vPvWGf-A~Vve--S~~~~i~vGerlyGy~P~ashl~l~p~~v~~~~f~d~s~hR~~l~~~YN~Y~r~~~d~~y~--  104 (314)
T PF11017_consen   30 WGIVPVWGF-ATVVE--SRHPGIAVGERLYGYFPMASHLVLEPGKVSPGGFRDVSPHRAGLPPIYNQYLRVSADPAYD--  104 (314)
T ss_pred             CcccccceE-EEEEe--eCCCCccCccEEEeeccccceeEEeccccCCCccccChhhhCcCchhhhceeecCCCcccC--
Confidence            344454444 56666  788899999999998531            11              222333332222110  


Q ss_pred             CCCChhh-hccCCCcHHHHHHHHHhh--cCCCCCCEEEEeCCCcHHHHHHHHHHH--HcCCcEEEEecCCcchHHHHHHH
Q psy2960         184 KDIALTE-ISGITSNPCTAYRMLKDY--NSLSPGDVVIQNGANSACGQNVIQIAR--HWGLKTINIVRNRDDIDKLKSYL  258 (405)
Q Consensus       184 ~~~s~~~-Aa~~~~~~~ta~~al~~~--~~~~~g~~VLI~ga~G~vG~~aiqla~--~~G~~v~~~~~~~~~~~~~~~~~  258 (405)
                        -+.++ -+.+-..+.|.|..-.-.  -+--..+.|+|.+|++-.++..+..++  .-+.+++.+++..+     ..+.
T Consensus       105 --~~~e~~~~LlrPLf~Tsfll~d~l~~~~~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~vglTS~~N-----~~Fv  177 (314)
T PF11017_consen  105 --PEREDWQMLLRPLFITSFLLDDFLFDNDFFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKVVGLTSARN-----VAFV  177 (314)
T ss_pred             --cchhHHHHHHHHHHHHHHHHHHHhcccccCCccEEEEeccchHHHHHHHHHhhccCCCceEEEEecCcc-----hhhh
Confidence              01122 233333455555432111  112234789999999999999998888  44568888887654     4688


Q ss_pred             HHcCC-cEEeChhhHHHHhhhcCCCCCcEEEECCCchhHHHHH-HhcccCC-EEEEEeccCCCCcccCcccccccCeEEE
Q psy2960         259 KSLGA-DYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLL-RTLVSKG-VMVTYGGMSREPVQIPTSAFIFKDITLR  335 (405)
Q Consensus       259 ~~lg~-~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~~~~~~~~-~~l~~~G-~~v~~g~~~~~~~~~~~~~~~~k~~~~~  335 (405)
                      +.+|. |.|+.|+++..+..    ..--+++|..|+..+...+ +.+...= ..+.+|.........+. .+  .+.+-.
T Consensus       178 e~lg~Yd~V~~Yd~i~~l~~----~~~~v~VDfaG~~~~~~~Lh~~l~d~l~~~~~VG~th~~~~~~~~-~l--~g~~~~  250 (314)
T PF11017_consen  178 ESLGCYDEVLTYDDIDSLDA----PQPVVIVDFAGNGEVLAALHEHLGDNLVYSCLVGATHWDKVEAPA-DL--PGPRPE  250 (314)
T ss_pred             hccCCceEEeehhhhhhccC----CCCEEEEECCCCHHHHHHHHHHHhhhhhEEEEEEccCccccCccc-cC--CCCCcE
Confidence            89996 88999988665321    3446899999998776543 4444432 45666644332211100 00  011111


Q ss_pred             EEecchhhhh---hccHHHHHHHHHHHHHHHHcCcccCC-cceeeehhhHHHHHHHHhhhcCC
Q psy2960         336 GHWMTRWQKE---NKESAERKSMMNELTEMMRTGKLAAP-AHKFVTLKNFQEALMNTMSIQGK  394 (405)
Q Consensus       336 g~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~A~~~~~~~~~~  394 (405)
                      .++.......   .-.++...+.+.+..+.+.+...... +..+-+.+.++++++.+.  +|+
T Consensus       251 ~FFAp~~~~kr~~~~G~~~~~~r~~~aw~~f~~~~~~wl~~~~~~G~ea~~~~y~~l~--~G~  311 (314)
T PF11017_consen  251 FFFAPDQIDKRIKEWGAAEFFQRMAAAWKRFAADAQPWLKVEEVAGPEAVEAAYQDLL--AGK  311 (314)
T ss_pred             EEeChHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhcCcEEEEEecCHHHHHHHHHHHh--cCC
Confidence            1111111110   11123333333333333333333333 567789999999999998  665

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.07  E-value=0.00022  Score=69.07  Aligned_cols=151  Identities=16%  Similarity=0.109  Sum_probs=85.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHH-HHcCCcEEeChhhHHHHhhhcCCCCCcEEEECC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVFTEEELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~-~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                      ++.+|+|.|+ |.+|+.+++.++.+|++|+++.++.    ++++.+ ..++........+...+.+..  ..+|+||+|+
T Consensus       166 ~~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~----~~~~~l~~~~g~~v~~~~~~~~~l~~~l--~~aDvVI~a~  238 (370)
T TIGR00518       166 EPGDVTIIGG-GVVGTNAAKMANGLGATVTILDINI----DRLRQLDAEFGGRIHTRYSNAYEIEDAV--KRADLLIGAV  238 (370)
T ss_pred             CCceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCH----HHHHHHHHhcCceeEeccCCHHHHHHHH--ccCCEEEEcc
Confidence            3456999999 9999999999999999877664332    233433 345553222222222222221  3579999998


Q ss_pred             C---c--hh--HHHHHHhcccCCEEEEEeccCCCCccc------CcccccccCeEEEEEe-cchhhhhhccHHHHHHHHH
Q psy2960         292 G---G--NS--ATNLLRTLVSKGVMVTYGGMSREPVQI------PTSAFIFKDITLRGHW-MTRWQKENKESAERKSMMN  357 (405)
Q Consensus       292 g---~--~~--~~~~~~~l~~~G~~v~~g~~~~~~~~~------~~~~~~~k~~~~~g~~-~~~~~~~~~~~~~~~~~~~  357 (405)
                      +   .  +.  ....++.+++++.++.++...+.....      +.......++.+.+.. +................++
T Consensus       239 ~~~g~~~p~lit~~~l~~mk~g~vIvDva~d~GG~~e~~~~t~~d~p~~~~~Gv~~~~v~nlP~~~p~~aS~~~~~~l~~  318 (370)
T TIGR00518       239 LIPGAKAPKLVSNSLVAQMKPGAVIVDVAIDQGGCVETSRPTTHDQPTYAVHDVVHYCVANMPGAVPKTSTYALTNATMP  318 (370)
T ss_pred             ccCCCCCCcCcCHHHHhcCCCCCEEEEEecCCCCCccCCcCCCCCCCEEEECCeEEEEeCCcccccHHHHHHHHHHHHHH
Confidence            3   2  21  356788899999999998654443221      1112333566666652 2222211111122234456


Q ss_pred             HHHHHHHcCcccC
Q psy2960         358 ELTEMMRTGKLAA  370 (405)
Q Consensus       358 ~~~~~~~~g~l~~  370 (405)
                      .+..+.++|.+.+
T Consensus       319 ~l~~~~~~g~~~~  331 (370)
T TIGR00518       319 YVLELANHGWRAA  331 (370)
T ss_pred             HHHHHHhcccccc
Confidence            6667777775543

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.01  E-value=0.00011  Score=68.99  Aligned_cols=110  Identities=13%  Similarity=0.147  Sum_probs=77.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      .|.+|+|.|. |.+|+++++.++.+|++|+++.++.    .+.+.+.++|+..+ ...+..+   .  -.++|+||+|++
T Consensus       151 ~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~----~~~~~~~~~G~~~~-~~~~l~~---~--l~~aDiVI~t~p  219 (296)
T PRK08306        151 HGSNVLVLGF-GRTGMTLARTLKALGANVTVGARKS----AHLARITEMGLSPF-HLSELAE---E--VGKIDIIFNTIP  219 (296)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCH----HHHHHHHHcCCeee-cHHHHHH---H--hCCCCEEEECCC
Confidence            6899999999 9999999999999999888876543    23566778887643 3333332   2  135899999998


Q ss_pred             chhHH-HHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEE
Q psy2960         293 GNSAT-NLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRG  336 (405)
Q Consensus       293 ~~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g  336 (405)
                      ..... ..++.+++++.++.++..++. ..+  ...-.++++..+
T Consensus       220 ~~~i~~~~l~~~~~g~vIIDla~~pgg-td~--~~a~~~Gv~~~~  261 (296)
T PRK08306        220 ALVLTKEVLSKMPPEALIIDLASKPGG-TDF--EYAEKRGIKALL  261 (296)
T ss_pred             hhhhhHHHHHcCCCCcEEEEEccCCCC-cCe--eehhhCCeEEEE
Confidence            66543 457889999999999865543 222  223335555554

>TIGR00936 ahcY adenosylhomocysteinase

Probab=97.98  E-value=0.0001  Score=71.47  Aligned_cols=101  Identities=17%  Similarity=0.207  Sum_probs=72.5

Q ss_pred             HHHHHHhhcC-CCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhc
Q psy2960         201 AYRMLKDYNS-LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDA  279 (405)
Q Consensus       201 a~~al~~~~~-~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t  279 (405)
                      ++.++.+..+ ...|++|+|.|. |.+|..+++.++.+|++|+++-.++    .+...+...|+. +.+.++.  +    
T Consensus       181 ~~~~i~r~t~~~l~Gk~VvViG~-G~IG~~vA~~ak~~Ga~ViV~d~dp----~r~~~A~~~G~~-v~~leea--l----  248 (406)
T TIGR00936       181 TIDGILRATNLLIAGKTVVVAGY-GWCGKGIAMRARGMGARVIVTEVDP----IRALEAAMDGFR-VMTMEEA--A----  248 (406)
T ss_pred             HHHHHHHhcCCCCCcCEEEEECC-CHHHHHHHHHHhhCcCEEEEEeCCh----hhHHHHHhcCCE-eCCHHHH--H----
Confidence            4455544334 368999999999 9999999999999999988864332    234445566763 3332211  2    


Q ss_pred             CCCCCcEEEECCCchhHH--HHHHhcccCCEEEEEecc
Q psy2960         280 SIPKPKLALNCVGGNSAT--NLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       280 ~g~g~Dvvld~~g~~~~~--~~~~~l~~~G~~v~~g~~  315 (405)
                        .+.|+||+++|.....  ..+..+++++.++..|..
T Consensus       249 --~~aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~~  284 (406)
T TIGR00936       249 --KIGDIFITATGNKDVIRGEHFENMKDGAIVANIGHF  284 (406)
T ss_pred             --hcCCEEEECCCCHHHHHHHHHhcCCCCcEEEEECCC
Confidence              2469999999987754  368899999999999854

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK08324 short chain dehydrogenase; Validated

Probab=97.94  E-value=5.2e-05  Score=79.65  Aligned_cols=113  Identities=11%  Similarity=0.127  Sum_probs=74.7

Q ss_pred             CcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEe
Q psy2960         166 GTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIV  245 (405)
Q Consensus       166 G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~  245 (405)
                      -++++|..+++..++.+ +.|++++|......          .....+|++|||.||+|++|.++++.+...|++|+.+.
T Consensus       385 ~~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~~----------~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~  453 (681)
T PRK08324        385 EAVGRYEPLSEQEAFDI-EYWSLEQAKLQRMP----------KPKPLAGKVALVTGAAGGIGKATAKRLAAEGACVVLAD  453 (681)
T ss_pred             hhcCCccCCChhhhcce-eeehhhhhhhhcCC----------CCcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEe
Confidence            46788888888888888 88998888632111          12334789999999999999999999999999988887


Q ss_pred             cCCcchHHHHHHHHHcCC--c---EEeChhh---HHH-Hhhhc-CCCCCcEEEECCC
Q psy2960         246 RNRDDIDKLKSYLKSLGA--D---YVFTEEE---LRN-ISRDA-SIPKPKLALNCVG  292 (405)
Q Consensus       246 ~~~~~~~~~~~~~~~lg~--~---~v~~~~d---~~~-i~~~t-~g~g~Dvvld~~g  292 (405)
                      ++.+..+   .....++.  .   ...|-.+   ... +.+.. ..+++|+||++.|
T Consensus       454 r~~~~~~---~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iDvvI~~AG  507 (681)
T PRK08324        454 LDEEAAE---AAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGVDIVVSNAG  507 (681)
T ss_pred             CCHHHHH---HHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence            6654322   22223332  1   1123222   222 22211 1347999999998

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.92  E-value=0.00014  Score=65.70  Aligned_cols=103  Identities=24%  Similarity=0.246  Sum_probs=66.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe--Ch---hhHHH-Hhhhc-CCCCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TE---EELRN-ISRDA-SIPKPK  285 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~--~~---~d~~~-i~~~t-~g~g~D  285 (405)
                      +|++|+|+|++|++|..+++.+...|++|+.++++.+..++..+.....+.-+.+  |-   ++... +.+.. ...++|
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   83 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAID   83 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            4789999999999999999999999999999988765433322333333322222  22   22222 22211 124689


Q ss_pred             EEEECCCchh------------------------HHHHHHhcccCCEEEEEecc
Q psy2960         286 LALNCVGGNS------------------------ATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       286 vvld~~g~~~------------------------~~~~~~~l~~~G~~v~~g~~  315 (405)
                      .++.+.|...                        .+..+.+++++|+++.++..
T Consensus        84 ~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~  137 (238)
T PRK05786         84 GLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSM  137 (238)
T ss_pred             EEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecc
Confidence            9999887421                        22334566778999998854

>PLN02494 adenosylhomocysteinase

Probab=97.85  E-value=0.00014  Score=71.23  Aligned_cols=100  Identities=13%  Similarity=0.189  Sum_probs=72.4

Q ss_pred             HHHHHhhcCC-CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcC
Q psy2960         202 YRMLKDYNSL-SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDAS  280 (405)
Q Consensus       202 ~~al~~~~~~-~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~  280 (405)
                      +.++.+..++ -.|++|+|.|. |.+|..+++.++.+|++|+++-.+.    .+...+...|+..+ +   .+++.    
T Consensus       241 ~d~i~r~t~i~LaGKtVvViGy-G~IGr~vA~~aka~Ga~VIV~e~dp----~r~~eA~~~G~~vv-~---leEal----  307 (477)
T PLN02494        241 PDGLMRATDVMIAGKVAVICGY-GDVGKGCAAAMKAAGARVIVTEIDP----ICALQALMEGYQVL-T---LEDVV----  307 (477)
T ss_pred             HHHHHHhcCCccCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCc----hhhHHHHhcCCeec-c---HHHHH----
Confidence            4455444343 67999999999 9999999999999999987764332    22344556676532 2   22211    


Q ss_pred             CCCCcEEEECCCchhH--HHHHHhcccCCEEEEEecc
Q psy2960         281 IPKPKLALNCVGGNSA--TNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       281 g~g~Dvvld~~g~~~~--~~~~~~l~~~G~~v~~g~~  315 (405)
                       ...|++++|.|....  ...++.|++++.++.+|..
T Consensus       308 -~~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~  343 (477)
T PLN02494        308 -SEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHF  343 (477)
T ss_pred             -hhCCEEEECCCCccchHHHHHhcCCCCCEEEEcCCC
Confidence             246999999998754  4679999999999999964

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.78  E-value=0.00014  Score=68.81  Aligned_cols=109  Identities=16%  Similarity=0.198  Sum_probs=76.6

Q ss_pred             cceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCC---CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHH
Q psy2960         177 DVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSL---SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDK  253 (405)
Q Consensus       177 ~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~---~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~  253 (405)
                      ..++++|+.+..+.++... +...+++++......   -+|.+|+|.|+ |.+|..+++.++..|+..+.+++...  ++
T Consensus       139 ~~a~~~~k~vr~et~i~~~-~~sv~~~Av~~a~~~~~~l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~--~r  214 (311)
T cd05213         139 QKAIKVGKRVRTETGISRG-AVSISSAAVELAEKIFGNLKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTY--ER  214 (311)
T ss_pred             HHHHHHHHHHhhhcCCCCC-CcCHHHHHHHHHHHHhCCccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCH--HH
Confidence            4578889999988887765 455566666432221   37999999999 99999999999998876666553321  22


Q ss_pred             HHHHHHHcCCcEEeChhhHHH-HhhhcCCCCCcEEEECCCchhH
Q psy2960         254 LKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCVGGNSA  296 (405)
Q Consensus       254 ~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~Dvvld~~g~~~~  296 (405)
                      ..+.+.++|++ +.+.++..+ +.      ..|+||.|++.+..
T Consensus       215 a~~la~~~g~~-~~~~~~~~~~l~------~aDvVi~at~~~~~  251 (311)
T cd05213         215 AEELAKELGGN-AVPLDELLELLN------EADVVISATGAPHY  251 (311)
T ss_pred             HHHHHHHcCCe-EEeHHHHHHHHh------cCCEEEECCCCCch
Confidence            34677788874 444444443 32      46999999998766

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=97.75  E-value=0.00072  Score=61.92  Aligned_cols=140  Identities=16%  Similarity=0.297  Sum_probs=84.6

Q ss_pred             CCCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHH
Q psy2960         152 LAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVI  231 (405)
Q Consensus       152 ~~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~ai  231 (405)
                      +++||+++..+    +|.+|.. +...++.++++++|..+. .+.... ....+..  .+.+|++||-.|+ |. |..++
T Consensus        67 ~~~g~~~~i~p----~~~~~~~-~~~~~i~i~p~~afgtg~-h~tt~~-~l~~l~~--~~~~~~~VLDiGc-Gs-G~l~i  135 (250)
T PRK00517         67 IRIGDRLWIVP----SWEDPPD-PDEINIELDPGMAFGTGT-HPTTRL-CLEALEK--LVLPGKTVLDVGC-GS-GILAI  135 (250)
T ss_pred             EEEcCCEEEEC----CCcCCCC-CCeEEEEECCCCccCCCC-CHHHHH-HHHHHHh--hcCCCCEEEEeCC-cH-HHHHH
Confidence            56699888774    5777755 778899999999988764 221211 2333332  3568999999999 44 88777


Q ss_pred             HHHHHcCCc-EEEEecCCcchHHHHHHHHHcCC-cEEeChhhHHHHhhhcCCC-CCcEEEECCCchhH----HHHHHhcc
Q psy2960         232 QIARHWGLK-TINIVRNRDDIDKLKSYLKSLGA-DYVFTEEELRNISRDASIP-KPKLALNCVGGNSA----TNLLRTLV  304 (405)
Q Consensus       232 qla~~~G~~-v~~~~~~~~~~~~~~~~~~~lg~-~~v~~~~d~~~i~~~t~g~-g~Dvvld~~g~~~~----~~~~~~l~  304 (405)
                      .+++ .|+. ++++-.++...+...+.+...+. +.+.       +.   .+. .+|+|+.....+..    ....+.|+
T Consensus       136 ~~~~-~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~-------~~---~~~~~fD~Vvani~~~~~~~l~~~~~~~Lk  204 (250)
T PRK00517        136 AAAK-LGAKKVLAVDIDPQAVEAARENAELNGVELNVY-------LP---QGDLKADVIVANILANPLLELAPDLARLLK  204 (250)
T ss_pred             HHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCceEE-------Ec---cCCCCcCEEEEcCcHHHHHHHHHHHHHhcC
Confidence            6554 6776 55553332222222222222232 1110       10   111 58999976654433    34678899


Q ss_pred             cCCEEEEEe
Q psy2960         305 SKGVMVTYG  313 (405)
Q Consensus       305 ~~G~~v~~g  313 (405)
                      ++|+++..|
T Consensus       205 pgG~lilsg  213 (250)
T PRK00517        205 PGGRLILSG  213 (250)
T ss_pred             CCcEEEEEE
Confidence            999999876

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.75  E-value=5.8e-05  Score=77.54  Aligned_cols=123  Identities=12%  Similarity=0.070  Sum_probs=77.6

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC-----------------cchHHHHHHHHHcCCcEEeChhh-
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR-----------------DDIDKLKSYLKSLGADYVFTEEE-  271 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~-----------------~~~~~~~~~~~~lg~~~v~~~~d-  271 (405)
                      ..++|++|+|.|+ |+.|+++++.++..|++|+++-..+                 +..+.+++.++++|++..++... 
T Consensus       133 ~~~~g~~V~VIGa-GpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~  211 (564)
T PRK12771        133 APDTGKRVAVIGG-GPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVG  211 (564)
T ss_pred             CCCCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEEC
Confidence            4678999999999 9999999999999999977764221                 12355678888999987776432 


Q ss_pred             HHH-HhhhcCCCCCcEEEECCCchhHH-HHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEE
Q psy2960         272 LRN-ISRDASIPKPKLALNCVGGNSAT-NLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGH  337 (405)
Q Consensus       272 ~~~-i~~~t~g~g~Dvvld~~g~~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~  337 (405)
                      ... ....  ..++|+||+++|..... ..+.....+|.+..++..... .... .....+++.+.|.
T Consensus       212 ~~~~~~~~--~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~-~~~~-~~~~gk~v~ViGg  275 (564)
T PRK12771        212 EDITLEQL--EGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAV-GEGE-PPFLGKRVVVIGG  275 (564)
T ss_pred             CcCCHHHH--HhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHh-hccC-CcCCCCCEEEECC
Confidence            110 1111  23689999999976432 234445556665554422110 0111 2234577777773

>PRK12742 oxidoreductase; Provisional

Probab=97.73  E-value=0.0005  Score=62.10  Aligned_cols=102  Identities=13%  Similarity=0.138  Sum_probs=64.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhh-cCCCCCcEEEEC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRD-ASIPKPKLALNC  290 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~-t~g~g~Dvvld~  290 (405)
                      .|++|||+|++|++|.++++.+...|++++.+.++.+.  ...+...+++...+ .|..+.+.+.+. ....++|++|++
T Consensus         5 ~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~--~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~   82 (237)
T PRK12742          5 TGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKD--AAERLAQETGATAVQTDSADRDAVIDVVRKSGALDILVVN   82 (237)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHH--HHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCCcEEEEC
Confidence            47899999999999999999999999998877643221  11233345565433 343333221111 112468999999


Q ss_pred             CCchh--------------------------HHHHHHhcccCCEEEEEeccC
Q psy2960         291 VGGNS--------------------------ATNLLRTLVSKGVMVTYGGMS  316 (405)
Q Consensus       291 ~g~~~--------------------------~~~~~~~l~~~G~~v~~g~~~  316 (405)
                      .|...                          ....+..++++|+++.++...
T Consensus        83 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~  134 (237)
T PRK12742         83 AGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVN  134 (237)
T ss_pred             CCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence            87421                          012234456789999988643

>KOG1205|consensus

Probab=97.69  E-value=0.00048  Score=63.26  Aligned_cols=105  Identities=20%  Similarity=0.344  Sum_probs=72.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE-Ee----C---hhhHHH-Hhhh-cCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-VF----T---EEELRN-ISRD-ASIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v~----~---~~d~~~-i~~~-t~g~  282 (405)
                      .|+.|+|.|||+|+|.+++.-.-..|++++.+++..+..+...+.+++.+... ++    |   .++... +... ...+
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg   90 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFG   90 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcC
Confidence            58999999999999999999889999999999988766555547777777654 32    2   222222 2111 1257


Q ss_pred             CCcEEEECCCch--------------------------hHHHHHHhcccC--CEEEEEeccCC
Q psy2960         283 KPKLALNCVGGN--------------------------SATNLLRTLVSK--GVMVTYGGMSR  317 (405)
Q Consensus       283 g~Dvvld~~g~~--------------------------~~~~~~~~l~~~--G~~v~~g~~~~  317 (405)
                      ++|+.+|..|-.                          .+..++..|++.  |+|+.+++..+
T Consensus        91 ~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG  153 (282)
T KOG1205|consen   91 RVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAG  153 (282)
T ss_pred             CCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEecccc
Confidence            899999988732                          123445555443  99999986543

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=0.00044  Score=60.32  Aligned_cols=118  Identities=20%  Similarity=0.226  Sum_probs=79.8

Q ss_pred             hhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe-C
Q psy2960         190 EISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-T  268 (405)
Q Consensus       190 ~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~-~  268 (405)
                      ..-++.-+...|.  +.+...+++|++||=+|+  |.|..++-+|+..| +|+.+-+.++-.+...+.++.+|.+.|. .
T Consensus        51 ~gqtis~P~~vA~--m~~~L~~~~g~~VLEIGt--GsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~  125 (209)
T COG2518          51 CGQTISAPHMVAR--MLQLLELKPGDRVLEIGT--GSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVR  125 (209)
T ss_pred             CCceecCcHHHHH--HHHHhCCCCCCeEEEECC--CchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEE
Confidence            3344443444333  235578999999999998  67999999999999 7777754443334444556778885543 2


Q ss_pred             hhhHHHHhhhcCCCCCcEEEECCCchhHHH-HHHhcccCCEEEEEec
Q psy2960         269 EEELRNISRDASIPKPKLALNCVGGNSATN-LLRTLVSKGVMVTYGG  314 (405)
Q Consensus       269 ~~d~~~i~~~t~g~g~Dvvld~~g~~~~~~-~~~~l~~~G~~v~~g~  314 (405)
                      ..|-.  ..+.....+|.|+-+.+.+.... .++.|++||+++..-+
T Consensus       126 ~gDG~--~G~~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         126 HGDGS--KGWPEEAPYDRIIVTAAAPEVPEALLDQLKPGGRLVIPVG  170 (209)
T ss_pred             ECCcc--cCCCCCCCcCEEEEeeccCCCCHHHHHhcccCCEEEEEEc
Confidence            33321  11222467999998888877754 5799999999988764

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=97.59  E-value=0.00067  Score=68.41  Aligned_cols=111  Identities=15%  Similarity=0.248  Sum_probs=69.4

Q ss_pred             HHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH-----cCC------cEE-eChhh
Q psy2960         204 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-----LGA------DYV-FTEEE  271 (405)
Q Consensus       204 al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~-----lg~------~~v-~~~~d  271 (405)
                      +.-...+.+.|++|||.||+|++|..+++.+...|++|++++++.++.....+.+.+     .|.      ..+ .|-.+
T Consensus        70 ~~~~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD  149 (576)
T PLN03209         70 AIPKELDTKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEK  149 (576)
T ss_pred             ccccccccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCC
Confidence            333345677999999999999999999999999999999998775543322222222     121      111 23333


Q ss_pred             HHHHhhhcCCCCCcEEEECCCchh----------------HHHHHHhccc--CCEEEEEeccC
Q psy2960         272 LRNISRDASIPKPKLALNCVGGNS----------------ATNLLRTLVS--KGVMVTYGGMS  316 (405)
Q Consensus       272 ~~~i~~~t~g~g~Dvvld~~g~~~----------------~~~~~~~l~~--~G~~v~~g~~~  316 (405)
                      .+.+.+..  .++|+||+|+|...                ....++.+..  .|+||.++...
T Consensus       150 ~esI~~aL--ggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSig  210 (576)
T PLN03209        150 PDQIGPAL--GNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLG  210 (576)
T ss_pred             HHHHHHHh--cCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccch
Confidence            33343332  46899999987521                1123344333  36999988643

>PRK08339 short chain dehydrogenase; Provisional

Probab=97.55  E-value=0.00094  Score=61.59  Aligned_cols=81  Identities=21%  Similarity=0.360  Sum_probs=52.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc-CCcE-E--eCh---hhHHH-HhhhcCCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADY-V--FTE---EELRN-ISRDASIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l-g~~~-v--~~~---~d~~~-i~~~t~g~g~  284 (405)
                      .|+++||.|+++++|.+.++.+...|++|+.+.++.+..++..+.+++. +.+. +  .|-   ++... +.+....+++
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~i   86 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGEP   86 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCCC
Confidence            5789999999999999999999999999998876654433333333222 3221 1  232   22333 3333223568


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        87 D~lv~nag~   95 (263)
T PRK08339         87 DIFFFSTGG   95 (263)
T ss_pred             cEEEECCCC
Confidence            999999874

>PRK06198 short chain dehydrogenase; Provisional

Probab=97.55  E-value=0.0029  Score=57.98  Aligned_cols=81  Identities=19%  Similarity=0.253  Sum_probs=52.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH-Hhhhc-CCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDA-SIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t-~g~g  283 (405)
                      .+.+|+|.|++|++|...++.+...|++ |+.+.++.++.+...+.+++.+....   .|-.+   ..+ +.... .-++
T Consensus         5 ~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   84 (260)
T PRK06198          5 DGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAFGR   84 (260)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5789999999999999999999999999 77776654443333334445554322   23222   222 21110 1136


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|++|++.|.
T Consensus        85 id~li~~ag~   94 (260)
T PRK06198         85 LDALVNAAGL   94 (260)
T ss_pred             CCEEEECCCc
Confidence            8999999974

>PRK12939 short chain dehydrogenase; Provisional

Probab=97.53  E-value=0.00097  Score=60.64  Aligned_cols=81  Identities=14%  Similarity=0.101  Sum_probs=53.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t-~g~g~  284 (405)
                      ++.+++|+|++|++|...+..+...|++++.+.++.++.+...+.++..+....   .|-.+   ... +.+.. ...++
T Consensus         6 ~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   85 (250)
T PRK12939          6 AGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGL   85 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            578999999999999999999999999999887665544444444444443321   13222   222 21111 12479


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |++|.+.|.
T Consensus        86 d~vi~~ag~   94 (250)
T PRK12939         86 DGLVNNAGI   94 (250)
T ss_pred             CEEEECCCC
Confidence            999999985

>PRK07109 short chain dehydrogenase; Provisional

Probab=97.53  E-value=0.0012  Score=63.19  Aligned_cols=81  Identities=15%  Similarity=0.250  Sum_probs=55.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t-~g~g~  284 (405)
                      .+.+|+|.||+|++|.++++.+...|++|+.+.++.+..++..+.+++.|.+..   .|..|   ... +.+.. .-+++
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~i   86 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGPI   86 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCCC
Confidence            568999999999999999999999999999988776554444455556665432   23222   222 22111 12468


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |++|++.|.
T Consensus        87 D~lInnAg~   95 (334)
T PRK07109         87 DTWVNNAMV   95 (334)
T ss_pred             CEEEECCCc
Confidence            999999984

>PRK06139 short chain dehydrogenase; Provisional

Probab=97.53  E-value=0.00047  Score=65.86  Aligned_cols=80  Identities=21%  Similarity=0.332  Sum_probs=56.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Chh---hHHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEE---ELRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~---d~~~-i~~~t-~g~g~  284 (405)
                      .+++|||+|++|++|.+.++.+...|++|+.+.++.+..++..+.+++.|.+..+   |-.   +... +.+.. ..+++
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   85 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGRI   85 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence            5789999999999999999999999999999887765544445556666765322   322   2222 22111 13569


Q ss_pred             cEEEECCC
Q psy2960         285 KLALNCVG  292 (405)
Q Consensus       285 Dvvld~~g  292 (405)
                      |++|++.|
T Consensus        86 D~lVnnAG   93 (330)
T PRK06139         86 DVWVNNVG   93 (330)
T ss_pred             CEEEECCC
Confidence            99999998

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.51  E-value=0.00073  Score=58.45  Aligned_cols=92  Identities=14%  Similarity=0.239  Sum_probs=64.1

Q ss_pred             EEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe-ChhhHHHHhhhcCCCCCcEEEECCCc--
Q psy2960         217 VIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVGG--  293 (405)
Q Consensus       217 VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~-~~~d~~~i~~~t~g~g~Dvvld~~g~--  293 (405)
                      |+|.||+|.+|...++.+...|.+|++++++.++.+.      ..+.+.+. |..|.+.+.+..  .++|+|+.++|.  
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~------~~~~~~~~~d~~d~~~~~~al--~~~d~vi~~~~~~~   72 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED------SPGVEIIQGDLFDPDSVKAAL--KGADAVIHAAGPPP   72 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH------CTTEEEEESCTTCHHHHHHHH--TTSSEEEECCHSTT
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc------ccccccceeeehhhhhhhhhh--hhcchhhhhhhhhc
Confidence            7999999999999999999999999999988765322      44455442 444444344432  379999999983  


Q ss_pred             ---hhHHHHHHhcccCC--EEEEEeccC
Q psy2960         294 ---NSATNLLRTLVSKG--VMVTYGGMS  316 (405)
Q Consensus       294 ---~~~~~~~~~l~~~G--~~v~~g~~~  316 (405)
                         ......++.++..|  +++.++...
T Consensus        73 ~~~~~~~~~~~a~~~~~~~~~v~~s~~~  100 (183)
T PF13460_consen   73 KDVDAAKNIIEAAKKAGVKRVVYLSSAG  100 (183)
T ss_dssp             THHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred             ccccccccccccccccccccceeeeccc
Confidence               22334455555444  888887543

...

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.46  E-value=0.0017  Score=60.56  Aligned_cols=93  Identities=15%  Similarity=0.226  Sum_probs=66.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      .|++|+|.|. |.+|.+++..++.+|++|++..++.+    +.+.+.+.|... +...+..+   .  -.+.|+|++|++
T Consensus       150 ~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~----~~~~~~~~g~~~-~~~~~l~~---~--l~~aDiVint~P  218 (287)
T TIGR02853       150 HGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSA----DLARITEMGLIP-FPLNKLEE---K--VAEIDIVINTIP  218 (287)
T ss_pred             CCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHCCCee-ecHHHHHH---H--hccCCEEEECCC
Confidence            5899999999 99999999999999998887765532    244455666543 33333333   1  135799999997


Q ss_pred             chhHH-HHHHhcccCCEEEEEeccC
Q psy2960         293 GNSAT-NLLRTLVSKGVMVTYGGMS  316 (405)
Q Consensus       293 ~~~~~-~~~~~l~~~G~~v~~g~~~  316 (405)
                      ..... ..++.++++..++.++..+
T Consensus       219 ~~ii~~~~l~~~k~~aliIDlas~P  243 (287)
T TIGR02853       219 ALVLTADVLSKLPKHAVIIDLASKP  243 (287)
T ss_pred             hHHhCHHHHhcCCCCeEEEEeCcCC
Confidence            65543 4578889988888888544

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=97.46  E-value=0.0013  Score=64.80  Aligned_cols=91  Identities=14%  Similarity=0.241  Sum_probs=66.2

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEEC
Q psy2960         211 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNC  290 (405)
Q Consensus       211 ~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~  290 (405)
                      .-.|++|+|.|. |.+|..+++.++.+|++|+++-.++.    +...+...|+.. .+   ++++.     ...|+|+.+
T Consensus       251 ~LaGKtVgVIG~-G~IGr~vA~rL~a~Ga~ViV~e~dp~----~a~~A~~~G~~~-~~---leell-----~~ADIVI~a  316 (476)
T PTZ00075        251 MIAGKTVVVCGY-GDVGKGCAQALRGFGARVVVTEIDPI----CALQAAMEGYQV-VT---LEDVV-----ETADIFVTA  316 (476)
T ss_pred             CcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCch----hHHHHHhcCcee-cc---HHHHH-----hcCCEEEEC
Confidence            347999999999 89999999999999999877643322    222333456543 22   22321     257999999


Q ss_pred             CCchhHH--HHHHhcccCCEEEEEecc
Q psy2960         291 VGGNSAT--NLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       291 ~g~~~~~--~~~~~l~~~G~~v~~g~~  315 (405)
                      +|...+.  ..+..|++++.++.+|..
T Consensus       317 tGt~~iI~~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        317 TGNKDIITLEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             CCcccccCHHHHhccCCCcEEEEcCCC
Confidence            9976653  578999999999999865

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=97.42  E-value=0.00075  Score=60.04  Aligned_cols=78  Identities=19%  Similarity=0.295  Sum_probs=55.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC----cEEeChh---hHHH-HhhhcC-CCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA----DYVFTEE---ELRN-ISRDAS-IPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~----~~v~~~~---d~~~-i~~~t~-g~g  283 (405)
                      .++.++|.||++|+|.++++.....|++++.+.++.+.   +.+++.+++.    -..+|-.   +.+. +..+.. -+.
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~dr---L~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~   81 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEAGAKVVLAARREER---LEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGR   81 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHH---HHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCc
Confidence            45889999999999999999999999999999977654   3445556763    1223333   3333 433322 345


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|+++|..|-
T Consensus        82 iDiLvNNAGl   91 (246)
T COG4221          82 IDILVNNAGL   91 (246)
T ss_pred             ccEEEecCCC
Confidence            9999999883

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=97.39  E-value=0.00065  Score=61.90  Aligned_cols=81  Identities=20%  Similarity=0.329  Sum_probs=56.3

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH-cCCcE-Ee--Chhh---HHHHhhh--cCCC
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADY-VF--TEEE---LRNISRD--ASIP  282 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~-lg~~~-v~--~~~d---~~~i~~~--t~g~  282 (405)
                      ..+.++||+|||+|+|...+..+...|.+++.++|+.++.++..+.+.. .|... ++  |..+   ...+.+.  ..+.
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~   83 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGG   83 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCC
Confidence            4678999999999999999999999999999999887765444443332 22221 22  3222   3333322  2245


Q ss_pred             CCcEEEECCC
Q psy2960         283 KPKLALNCVG  292 (405)
Q Consensus       283 g~Dvvld~~g  292 (405)
                      .+|+.+|+.|
T Consensus        84 ~IdvLVNNAG   93 (265)
T COG0300          84 PIDVLVNNAG   93 (265)
T ss_pred             cccEEEECCC
Confidence            8999999998

>PRK12828 short chain dehydrogenase; Provisional

Probab=97.39  E-value=0.0027  Score=57.22  Aligned_cols=81  Identities=14%  Similarity=0.124  Sum_probs=53.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eCh---hhHHH-Hhhhc-CCCCCcE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTE---EELRN-ISRDA-SIPKPKL  286 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~---~d~~~-i~~~t-~g~g~Dv  286 (405)
                      +|.++||+|++|++|..+++.+...|++|+.+.++.++..+..+.....+...+ .|.   ++... +.+.. ...++|+
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~   85 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGRLDA   85 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCCcCE
Confidence            478999999999999999999988899999998765544343444444444332 232   22222 22211 1247899


Q ss_pred             EEECCCc
Q psy2960         287 ALNCVGG  293 (405)
Q Consensus       287 vld~~g~  293 (405)
                      |+.+.|.
T Consensus        86 vi~~ag~   92 (239)
T PRK12828         86 LVNIAGA   92 (239)
T ss_pred             EEECCcc
Confidence            9998873

>PRK07806 short chain dehydrogenase; Provisional

Probab=97.39  E-value=0.0034  Score=57.10  Aligned_cols=102  Identities=13%  Similarity=0.174  Sum_probs=62.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcc-hHHHHHHHHHcCCcE-E--eChhh---HHH-HhhhcC-CCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYLKSLGADY-V--FTEEE---LRN-ISRDAS-IPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~-~~~~~~~~~~lg~~~-v--~~~~d---~~~-i~~~t~-g~g  283 (405)
                      .|.++||.|++|++|...+..+...|++|+++.++.+. .+...+.++..+... .  .|..+   ... +.+... ..+
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGG   84 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            46899999999999999999998999999888765432 112222233334321 1  23222   222 222211 246


Q ss_pred             CcEEEECCCch--------------------hHHHHHHhcccCCEEEEEec
Q psy2960         284 PKLALNCVGGN--------------------SATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       284 ~Dvvld~~g~~--------------------~~~~~~~~l~~~G~~v~~g~  314 (405)
                      +|+++.+.|..                    .+..+...+.++|+++.++.
T Consensus        85 ~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS  135 (248)
T PRK07806         85 LDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS  135 (248)
T ss_pred             CcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence            89999887642                    11223444556789998875

>PRK05993 short chain dehydrogenase; Provisional

Probab=97.36  E-value=0.0023  Score=59.46  Aligned_cols=76  Identities=14%  Similarity=0.177  Sum_probs=51.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhh---HHH-Hhhhc--CCCCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEE---LRN-ISRDA--SIPKPK  285 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d---~~~-i~~~t--~g~g~D  285 (405)
                      .+++|+|.||+|++|.+.++.+...|++|+++.++.+.    ++.+.+.+.+.+ .|..|   ... +.+..  .++.+|
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~----~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id   78 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEED----VAALEAEGLEAFQLDYAEPESIAALVAQVLELSGGRLD   78 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHCCceEEEccCCCHHHHHHHHHHHHHHcCCCcc
Confidence            46799999999999999999998899999999866443    334444455433 24332   222 22211  134799


Q ss_pred             EEEECCC
Q psy2960         286 LALNCVG  292 (405)
Q Consensus       286 vvld~~g  292 (405)
                      +++++.|
T Consensus        79 ~li~~Ag   85 (277)
T PRK05993         79 ALFNNGA   85 (277)
T ss_pred             EEEECCC
Confidence            9999986

>PRK07904 short chain dehydrogenase; Provisional

Probab=97.34  E-value=0.0016  Score=59.65  Aligned_cols=84  Identities=15%  Similarity=0.122  Sum_probs=55.1

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcc-hHHHHHHHHHcCCc--EE--eChh---hHHH-Hhhhc
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDD-IDKLKSYLKSLGAD--YV--FTEE---ELRN-ISRDA  279 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~-~~~~~~~~~~lg~~--~v--~~~~---d~~~-i~~~t  279 (405)
                      .+..+.+|||.||+|++|.+.++-+... |++|+.+.++.+. .++..+.++..+..  ++  .|..   +... +.+..
T Consensus         4 ~~~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~   83 (253)
T PRK07904          4 AVGNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAF   83 (253)
T ss_pred             ccCCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHH
Confidence            3567889999999999999999877666 5899999877654 44444445555531  12  2322   2233 33333


Q ss_pred             CCCCCcEEEECCCc
Q psy2960         280 SIPKPKLALNCVGG  293 (405)
Q Consensus       280 ~g~g~Dvvld~~g~  293 (405)
                      ..+++|+++++.|.
T Consensus        84 ~~g~id~li~~ag~   97 (253)
T PRK07904         84 AGGDVDVAIVAFGL   97 (253)
T ss_pred             hcCCCCEEEEeeec
Confidence            23579999988764

>PRK07576 short chain dehydrogenase; Provisional

Probab=97.32  E-value=0.0036  Score=57.73  Aligned_cols=80  Identities=14%  Similarity=0.185  Sum_probs=52.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t-~g~g~  284 (405)
                      ++.++||.|++|++|...++.+...|++|+.+.++.+..+...+.+.+.+....   .|..+   ... +.+.. ...++
T Consensus         8 ~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~i   87 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGPI   87 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            688999999999999999999999999999988765443332233333343221   23222   222 22221 12468


Q ss_pred             cEEEECCC
Q psy2960         285 KLALNCVG  292 (405)
Q Consensus       285 Dvvld~~g  292 (405)
                      |++|++.|
T Consensus        88 D~vi~~ag   95 (264)
T PRK07576         88 DVLVSGAA   95 (264)
T ss_pred             CEEEECCC
Confidence            99999886

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.32  E-value=0.0016  Score=59.63  Aligned_cols=81  Identities=14%  Similarity=0.167  Sum_probs=55.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Chhh---HHH-Hhhh-cCCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEEE---LRN-ISRD-ASIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~d---~~~-i~~~-t~g~g~  284 (405)
                      .|.++||.|++|++|..+++.+...|++|+.+.++.+..++..+.+++.+.+..+   |-.+   ... +.+. ..-+++
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   85 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGSV   85 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999999999999998887765544555555566654322   3222   222 2211 112468


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++.|.|.
T Consensus        86 d~vi~~ag~   94 (262)
T PRK13394         86 DILVSNAGI   94 (262)
T ss_pred             CEEEECCcc
Confidence            999999874

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.24  E-value=0.0047  Score=56.12  Aligned_cols=80  Identities=16%  Similarity=0.281  Sum_probs=51.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE-E--eCh---hhHHH-Hhhh-cCCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-V--FTE---EELRN-ISRD-ASIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v--~~~---~d~~~-i~~~-t~g~g~  284 (405)
                      .+.++||.|++|++|...++.+...|++|+++.++.++.+.....+.. +.+. +  .|-   +++.. +.+. .....+
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   82 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-GGRAIAVAADVSDEADVEAAVAAALERFGSV   82 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            467999999999999999999999999999998776543333333222 2211 1  122   22222 2221 113468


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+||.+.|.
T Consensus        83 d~vi~~ag~   91 (251)
T PRK07231         83 DILVNNAGT   91 (251)
T ss_pred             CEEEECCCC
Confidence            999999874

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=97.23  E-value=0.0016  Score=60.20  Aligned_cols=104  Identities=20%  Similarity=0.275  Sum_probs=65.1

Q ss_pred             HHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc--EEeChhhHHHHhhhc
Q psy2960         202 YRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YVFTEEELRNISRDA  279 (405)
Q Consensus       202 ~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~--~v~~~~d~~~i~~~t  279 (405)
                      +..+.+.+++++|++||-.|+  |-|-.++.+|+..|++|++++-|.+..+...+.+++.|..  .-+...|+.   +. 
T Consensus        51 ~~~~~~~~~l~~G~~vLDiGc--GwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~---~~-  124 (273)
T PF02353_consen   51 LDLLCEKLGLKPGDRVLDIGC--GWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYR---DL-  124 (273)
T ss_dssp             HHHHHTTTT--TT-EEEEES---TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GG---G--
T ss_pred             HHHHHHHhCCCCCCEEEEeCC--CccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecc---cc-
Confidence            444557789999999999998  4789999999999999999998877766666777777742  122222222   12 


Q ss_pred             CCCCCcEEEE-----CCCchh----HHHHHHhcccCCEEEEE
Q psy2960         280 SIPKPKLALN-----CVGGNS----ATNLLRTLVSKGVMVTY  312 (405)
Q Consensus       280 ~g~g~Dvvld-----~~g~~~----~~~~~~~l~~~G~~v~~  312 (405)
                       ...+|.|+.     .+|.+.    +...-+.|+|+|+++.-
T Consensus       125 -~~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq  165 (273)
T PF02353_consen  125 -PGKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQ  165 (273)
T ss_dssp             ---S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEE
T ss_pred             -CCCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEE
Confidence             127888775     444332    33456899999998754

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.23  E-value=0.0018  Score=53.28  Aligned_cols=92  Identities=14%  Similarity=0.230  Sum_probs=55.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCcchHHHHHHHHHcCCc--EEeChhhHHHHhhhcCCCCCcEEEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGAD--YVFTEEELRNISRDASIPKPKLALN  289 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~~~~~~~~~~~~lg~~--~v~~~~d~~~i~~~t~g~g~Dvvld  289 (405)
                      .+.+|+|.|+ |++|.+++..+...|++ ++++.|+.++   ..+++..++..  .+...++.....     ..+|+||+
T Consensus        11 ~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~r---a~~l~~~~~~~~~~~~~~~~~~~~~-----~~~DivI~   81 (135)
T PF01488_consen   11 KGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPER---AEALAEEFGGVNIEAIPLEDLEEAL-----QEADIVIN   81 (135)
T ss_dssp             TTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHH---HHHHHHHHTGCSEEEEEGGGHCHHH-----HTESEEEE
T ss_pred             CCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHH---HHHHHHHcCccccceeeHHHHHHHH-----hhCCeEEE
Confidence            6899999999 99999999999999998 4455444333   23444445332  244455543311     24799999


Q ss_pred             CCCchhH---HHHHHhccc-CCEEEEEe
Q psy2960         290 CVGGNSA---TNLLRTLVS-KGVMVTYG  313 (405)
Q Consensus       290 ~~g~~~~---~~~~~~l~~-~G~~v~~g  313 (405)
                      |++....   ...+....+ -+.++.++
T Consensus        82 aT~~~~~~i~~~~~~~~~~~~~~v~Dla  109 (135)
T PF01488_consen   82 ATPSGMPIITEEMLKKASKKLRLVIDLA  109 (135)
T ss_dssp             -SSTTSTSSTHHHHTTTCHHCSEEEES-
T ss_pred             ecCCCCcccCHHHHHHHHhhhhceeccc
Confidence            9986533   222332222 25677765

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK06182 short chain dehydrogenase; Validated

Probab=97.23  E-value=0.0039  Score=57.72  Aligned_cols=77  Identities=19%  Similarity=0.233  Sum_probs=51.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eCh---hhHHH-Hhhh-cCCCCCcE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTE---EELRN-ISRD-ASIPKPKL  286 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~---~d~~~-i~~~-t~g~g~Dv  286 (405)
                      .+.+++|.|++|++|.+.++.+...|++|+++.++.++    ++.+...+...+ .|-   ++... +.+. ....++|+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~----l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~   77 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDK----MEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDV   77 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence            46799999999999999999998999999998866433    333333344332 232   22333 3222 12357999


Q ss_pred             EEECCCc
Q psy2960         287 ALNCVGG  293 (405)
Q Consensus       287 vld~~g~  293 (405)
                      ++++.|.
T Consensus        78 li~~ag~   84 (273)
T PRK06182         78 LVNNAGY   84 (273)
T ss_pred             EEECCCc
Confidence            9999973

>PRK06128 oxidoreductase; Provisional

Probab=97.20  E-value=0.0056  Score=57.62  Aligned_cols=103  Identities=14%  Similarity=0.182  Sum_probs=64.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcc--hHHHHHHHHHcCCcEEe---Chh---hHHH-Hhhhc-CCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD--IDKLKSYLKSLGADYVF---TEE---ELRN-ISRDA-SIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~--~~~~~~~~~~lg~~~v~---~~~---d~~~-i~~~t-~g~  282 (405)
                      .|.++||.|++|++|.+.+..+...|++|+.+..+.+.  .++..+.++..|....+   |-.   +..+ +.+.. ..+
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  133 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKELG  133 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHhC
Confidence            57899999999999999999999999999877654332  12233444455543222   322   2222 22211 124


Q ss_pred             CCcEEEECCCch---------------------------hHHHHHHhcccCCEEEEEecc
Q psy2960         283 KPKLALNCVGGN---------------------------SATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       283 g~Dvvld~~g~~---------------------------~~~~~~~~l~~~G~~v~~g~~  315 (405)
                      ++|++|++.|..                           .+..++..+.++|+++.++..
T Consensus       134 ~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~  193 (300)
T PRK06128        134 GLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSI  193 (300)
T ss_pred             CCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCc
Confidence            699999998731                           011233455678899988754

>PRK05693 short chain dehydrogenase; Provisional

Probab=97.20  E-value=0.0038  Score=57.81  Aligned_cols=74  Identities=19%  Similarity=0.243  Sum_probs=50.2

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhh---HHH-Hhhhc-CCCCCcEEE
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEE---LRN-ISRDA-SIPKPKLAL  288 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d---~~~-i~~~t-~g~g~Dvvl  288 (405)
                      +++||.||+|++|.+.++.+...|++|+++.++.+.    .+.+.+.+...+ .|..+   ... +.... ...++|+++
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi   77 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAED----VEALAAAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLI   77 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            479999999999999999999999999998865432    333344454433 34322   333 22221 135699999


Q ss_pred             ECCC
Q psy2960         289 NCVG  292 (405)
Q Consensus       289 d~~g  292 (405)
                      ++.|
T Consensus        78 ~~ag   81 (274)
T PRK05693         78 NNAG   81 (274)
T ss_pred             ECCC
Confidence            9998

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=97.20  E-value=0.0016  Score=59.65  Aligned_cols=115  Identities=16%  Similarity=0.250  Sum_probs=82.4

Q ss_pred             CCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc
Q psy2960         185 DIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD  264 (405)
Q Consensus       185 ~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~  264 (405)
                      ++++++|-      ..++..+.+..+++||++||=+|+  |=|.+++..|+..|++|++++-|.+..+...+.+++.|..
T Consensus        50 ~~tL~eAQ------~~k~~~~~~kl~L~~G~~lLDiGC--GWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~  121 (283)
T COG2230          50 DMTLEEAQ------RAKLDLILEKLGLKPGMTLLDIGC--GWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLE  121 (283)
T ss_pred             CCChHHHH------HHHHHHHHHhcCCCCCCEEEEeCC--ChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCC
Confidence            34566653      236666677799999999999999  4589999999999999999998887777667777888875


Q ss_pred             -EE-e---ChhhHHHHhhhcCCCCCcEEEE-----CCCch----hHHHHHHhcccCCEEEEEecc
Q psy2960         265 -YV-F---TEEELRNISRDASIPKPKLALN-----CVGGN----SATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       265 -~v-~---~~~d~~~i~~~t~g~g~Dvvld-----~~g~~----~~~~~~~~l~~~G~~v~~g~~  315 (405)
                       ++ +   |++++.+        .||-|+.     .+|.+    .+..+-++|+++|+++.-...
T Consensus       122 ~~v~v~l~d~rd~~e--------~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~  178 (283)
T COG2230         122 DNVEVRLQDYRDFEE--------PFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSIT  178 (283)
T ss_pred             cccEEEecccccccc--------ccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEec
Confidence             22 1   3344322        2676653     44542    234567899999999887643

>PRK07832 short chain dehydrogenase; Provisional

Probab=97.19  E-value=0.004  Score=57.60  Aligned_cols=78  Identities=14%  Similarity=0.133  Sum_probs=50.6

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE----eChhh---HHH-Hhhhc-CCCCCcE
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV----FTEEE---LRN-ISRDA-SIPKPKL  286 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v----~~~~d---~~~-i~~~t-~g~g~Dv  286 (405)
                      +++|.||+|++|.++++.+...|++|+.+.++.+..+...+.++..+...+    .|-.+   ... +.+.. ...++|+
T Consensus         2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   81 (272)
T PRK07832          2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMDV   81 (272)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence            699999999999999999999999988887665443333344444454321    23222   222 22211 1346899


Q ss_pred             EEECCCc
Q psy2960         287 ALNCVGG  293 (405)
Q Consensus       287 vld~~g~  293 (405)
                      ++++.|.
T Consensus        82 lv~~ag~   88 (272)
T PRK07832         82 VMNIAGI   88 (272)
T ss_pred             EEECCCC
Confidence            9999974

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.18  E-value=0.0059  Score=56.06  Aligned_cols=81  Identities=14%  Similarity=0.108  Sum_probs=50.3

Q ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe--C---hhhHHH-HhhhcC-CCC
Q psy2960         213 PGDVVIQNGAN--SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--T---EEELRN-ISRDAS-IPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~--G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~--~---~~d~~~-i~~~t~-g~g  283 (405)
                      .|+++||.|++  +|+|.++++.+...|++|+.+.++.+..+...+...+++...++  |   .++... +.+... .+.
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   88 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWGR   88 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcCC
Confidence            57899999997  49999999999999999988876533212222333444432332  3   222322 222211 246


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|+++++.|.
T Consensus        89 ld~lv~nAg~   98 (258)
T PRK07533         89 LDFLLHSIAF   98 (258)
T ss_pred             CCEEEEcCcc
Confidence            8999999873

>PRK05866 short chain dehydrogenase; Provisional

Probab=97.18  E-value=0.0022  Score=60.26  Aligned_cols=81  Identities=17%  Similarity=0.312  Sum_probs=53.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eCh---hhHHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTE---EELRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~---~d~~~-i~~~t-~g~g~  284 (405)
                      .+.+++|.||+|++|.+.++.+...|++|+++.++.+..++..+...+.+.+..   .|-   ++... +.... ..+++
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~i  118 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGGV  118 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            468999999999999999999988999999998775544443444444444321   232   22222 22111 12478


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |++++|.|.
T Consensus       119 d~li~~AG~  127 (293)
T PRK05866        119 DILINNAGR  127 (293)
T ss_pred             CEEEECCCC
Confidence            999999874

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=97.17  E-value=0.0077  Score=55.00  Aligned_cols=81  Identities=16%  Similarity=0.166  Sum_probs=53.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChh---hHHH-Hhhh-cCCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEE---ELRN-ISRD-ASIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~---d~~~-i~~~-t~g~g~  284 (405)
                      .|.++||+||+|++|.+.++.+...|++++.+.++.++.++..+..+..+....   .|-.   +... +.+. ....++
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   87 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGPI   87 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCCC
Confidence            578999999999999999999999999999888765443333344444343221   2322   2222 2221 113468


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        88 d~vi~~ag~   96 (254)
T PRK08085         88 DVLINNAGI   96 (254)
T ss_pred             CEEEECCCc
Confidence            999999974

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.16  E-value=0.0026  Score=57.92  Aligned_cols=80  Identities=16%  Similarity=0.228  Sum_probs=53.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eCh---hhHHH-HhhhcC-CCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTE---EELRN-ISRDAS-IPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~---~d~~~-i~~~t~-g~g~  284 (405)
                      +|+++||.|++|++|..+++.+...|++++.+.++.++.+...+..+..+....   .|-   ++..+ +..... ..++
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQL   83 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            578999999999999999999999999988887665444444444455555321   232   22223 222211 2468


Q ss_pred             cEEEECCC
Q psy2960         285 KLALNCVG  292 (405)
Q Consensus       285 Dvvld~~g  292 (405)
                      |+||++.|
T Consensus        84 d~vi~~ag   91 (253)
T PRK08217         84 NGLINNAG   91 (253)
T ss_pred             CEEEECCC
Confidence            99999987

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=97.16  E-value=0.0093  Score=52.48  Aligned_cols=100  Identities=14%  Similarity=0.171  Sum_probs=63.4

Q ss_pred             hcCCCCCCEEEEeCCCcHHHHHHHHHHHHcC--CcEEEEecCCcchHHHHHHHHHcC-CcEEe-ChhhHHH-HhhhcCCC
Q psy2960         208 YNSLSPGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLG-ADYVF-TEEELRN-ISRDASIP  282 (405)
Q Consensus       208 ~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G--~~v~~~~~~~~~~~~~~~~~~~lg-~~~v~-~~~d~~~-i~~~t~g~  282 (405)
                      ..++.+|++||-.|+ |. |..++++|+..+  .+++++-.+++..+...+.++.+| .+.+. ...|..+ +...  ..
T Consensus        35 ~l~~~~~~~vlDlG~-Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~--~~  110 (198)
T PRK00377         35 KLRLRKGDMILDIGC-GT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTI--NE  110 (198)
T ss_pred             HcCCCCcCEEEEeCC-cC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhc--CC
Confidence            368899999999999 44 999999998874  456666444333333334455666 33332 1223333 3222  24


Q ss_pred             CCcEEEECCCch----hHHHHHHhcccCCEEEE
Q psy2960         283 KPKLALNCVGGN----SATNLLRTLVSKGVMVT  311 (405)
Q Consensus       283 g~Dvvld~~g~~----~~~~~~~~l~~~G~~v~  311 (405)
                      .+|.|+...+..    .+..+.+.|+|+|+++.
T Consensus       111 ~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~  143 (198)
T PRK00377        111 KFDRIFIGGGSEKLKEIISASWEIIKKGGRIVI  143 (198)
T ss_pred             CCCEEEECCCcccHHHHHHHHHHHcCCCcEEEE
Confidence            699999865532    33456788999999985

>PRK09072 short chain dehydrogenase; Provisional

Probab=97.15  E-value=0.0057  Score=56.21  Aligned_cols=80  Identities=16%  Similarity=0.213  Sum_probs=50.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc-EEe--Ch---hhHHH-HhhhcCCCCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YVF--TE---EELRN-ISRDASIPKPK  285 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~-~v~--~~---~d~~~-i~~~t~g~g~D  285 (405)
                      ++.++||+||+|++|...+..+...|++|+++.++.+..+...... ..+.. +.+  |-   ++... +......+.+|
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id   82 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PYPGRHRWVVADLTSEAGREAVLARAREMGGIN   82 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hcCCceEEEEccCCCHHHHHHHHHHHHhcCCCC
Confidence            4789999999999999999999999999999887654332222222 12221 121  22   22222 22221135789


Q ss_pred             EEEECCCc
Q psy2960         286 LALNCVGG  293 (405)
Q Consensus       286 vvld~~g~  293 (405)
                      +++.+.|.
T Consensus        83 ~lv~~ag~   90 (263)
T PRK09072         83 VLINNAGV   90 (263)
T ss_pred             EEEECCCC
Confidence            99999874

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=97.13  E-value=0.0071  Score=54.63  Aligned_cols=81  Identities=17%  Similarity=0.250  Sum_probs=54.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Chhh---HHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~d---~~~-i~~~t-~g~g~  284 (405)
                      ++.+|||+|++|++|...++.+...|.+++.+.++.++.+...+..++.+....+   |..+   ... +.+.. .-..+
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGAL   83 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            4578999999999999999999899999988887765544444555555543322   3222   222 22211 12468


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |.++.+.|.
T Consensus        84 d~vi~~ag~   92 (246)
T PRK05653         84 DILVNNAGI   92 (246)
T ss_pred             CEEEECCCc
Confidence            999999864

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.13  E-value=0.00078  Score=67.31  Aligned_cols=91  Identities=13%  Similarity=0.106  Sum_probs=60.3

Q ss_pred             hcCCCCCCEEE----EeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc-EEeChhhH--HH-Hhhhc
Q psy2960         208 YNSLSPGDVVI----QNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YVFTEEEL--RN-ISRDA  279 (405)
Q Consensus       208 ~~~~~~g~~VL----I~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~-~v~~~~d~--~~-i~~~t  279 (405)
                      ..++++|+++|    |+|++|++|.+++|+++.+|++|+++.++..+    +...+..+.+ .++|.+..  .. +... 
T Consensus        28 l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~~----~~~~~~~~~~~~~~d~~~~~~~~~l~~~-  102 (450)
T PRK08261         28 LRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGYDVVANNDGGLT----WAAGWGDRFGALVFDATGITDPADLKAL-  102 (450)
T ss_pred             ccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCCeeeecCccccc----cccCcCCcccEEEEECCCCCCHHHHHHH-
Confidence            35778999998    99999999999999999999999998755431    1111222333 34443321  11 2211 


Q ss_pred             CCCCCcEEEECCCchhHHHHHHhcccCCEEEEEeccC
Q psy2960         280 SIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMS  316 (405)
Q Consensus       280 ~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~~  316 (405)
                                   .......++.|.++|+|+.++...
T Consensus       103 -------------~~~~~~~l~~l~~~griv~i~s~~  126 (450)
T PRK08261        103 -------------YEFFHPVLRSLAPCGRVVVLGRPP  126 (450)
T ss_pred             -------------HHHHHHHHHhccCCCEEEEEcccc
Confidence                         133455678888999999998543

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.13  E-value=0.0085  Score=59.28  Aligned_cols=153  Identities=18%  Similarity=0.236  Sum_probs=89.2

Q ss_pred             CCCccceEEEEEEEcCCCCCCCCCCEEE-ecC-------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHH
Q psy2960         132 AVPGFEGVGEVVEVGSDVSSLAVGDHVI-PDT-------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYR  203 (405)
Q Consensus       132 ~~lG~E~~G~V~~vG~~v~~~~~GdrV~-~~~-------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~  203 (405)
                      ..-|+|+++.+.+|+++++..-+|+.=+ +-.       ...|+......-=-...+++|+.+..+.+.. ..+...++.
T Consensus        90 ~~~g~ea~~hl~~V~~GldS~V~GE~qIlgQvk~a~~~a~~~g~~g~~l~~lf~~a~~~~k~v~~~t~i~-~~~~Sv~~~  168 (423)
T PRK00045         90 VHEGEEAVRHLFRVASGLDSMVLGEPQILGQVKDAYALAQEAGTVGTILNRLFQKAFSVAKRVRTETGIG-AGAVSVASA  168 (423)
T ss_pred             hcCCHHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhHhhhcCCC-CCCcCHHHH
Confidence            3579999999999999988755555432 110       0112211111000011244555444433322 224445566


Q ss_pred             HHHhhcC---CCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH-Hhhhc
Q psy2960         204 MLKDYNS---LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDA  279 (405)
Q Consensus       204 al~~~~~---~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t  279 (405)
                      ++.....   -.+|++|+|.|+ |.+|.++++.++..|++.+.+++...  +...+++..+|.+ +++..+..+ +    
T Consensus       169 Av~~a~~~~~~~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~--~ra~~la~~~g~~-~~~~~~~~~~l----  240 (423)
T PRK00045        169 AVELAKQIFGDLSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTL--ERAEELAEEFGGE-AIPLDELPEAL----  240 (423)
T ss_pred             HHHHHHHhhCCccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCH--HHHHHHHHHcCCc-EeeHHHHHHHh----
Confidence            6643221   257899999999 99999999999999985444442221  2223466777764 444444433 3    


Q ss_pred             CCCCCcEEEECCCchh
Q psy2960         280 SIPKPKLALNCVGGNS  295 (405)
Q Consensus       280 ~g~g~Dvvld~~g~~~  295 (405)
                        .++|+||+|+|.+.
T Consensus       241 --~~aDvVI~aT~s~~  254 (423)
T PRK00045        241 --AEADIVISSTGAPH  254 (423)
T ss_pred             --ccCCEEEECCCCCC
Confidence              35799999998754

>PRK07478 short chain dehydrogenase; Provisional

Probab=97.12  E-value=0.003  Score=57.72  Aligned_cols=81  Identities=21%  Similarity=0.309  Sum_probs=54.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Chh---hHHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEE---ELRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~---d~~~-i~~~t-~g~g~  284 (405)
                      .+.+++|.|++|++|.+.+..+...|++++.+.++.++.++..+.+++.+.+..+   |-.   +... +.+.. ..+.+
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGGL   84 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            4789999999999999999999899999999987765544444555555543221   322   2222 22211 12468


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        85 d~li~~ag~   93 (254)
T PRK07478         85 DIAFNNAGT   93 (254)
T ss_pred             CEEEECCCC
Confidence            999999873

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=97.11  E-value=0.0076  Score=55.97  Aligned_cols=80  Identities=15%  Similarity=0.181  Sum_probs=50.9

Q ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHcCCcEEEEecCCcchHHHH-HHHHHcCCcEE--eChhh---HHH-HhhhcC-CC
Q psy2960         213 PGDVVIQNGAN--SACGQNVIQIARHWGLKTINIVRNRDDIDKLK-SYLKSLGADYV--FTEEE---LRN-ISRDAS-IP  282 (405)
Q Consensus       213 ~g~~VLI~ga~--G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~-~~~~~lg~~~v--~~~~d---~~~-i~~~t~-g~  282 (405)
                      .|+++||.||+  +|+|.++++.+...|++|+.+.++.+ ..+++ +...+++....  .|-.|   ... +.+... .+
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~-~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~~~g   82 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEA-LKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKKDLG   82 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHH-HHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHHHcC
Confidence            47899999997  79999999999899999988765532 12222 23344554322  23222   222 222211 24


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      .+|+++++.|.
T Consensus        83 ~iDilVnnAG~   93 (274)
T PRK08415         83 KIDFIVHSVAF   93 (274)
T ss_pred             CCCEEEECCcc
Confidence            68999999883

>PRK05867 short chain dehydrogenase; Provisional

Probab=97.10  E-value=0.0029  Score=57.81  Aligned_cols=81  Identities=17%  Similarity=0.238  Sum_probs=53.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChh---hHHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEE---ELRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~---d~~~-i~~~t-~g~g~  284 (405)
                      .|+++||.|++|++|.+.++.+...|++|+.+.++.+..+...+.++..+.+..   .|-.   +..+ +.+.. ..+++
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   87 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGGI   87 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            478999999999999999999999999999888765544444444444443221   2322   2222 22211 12468


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        88 d~lv~~ag~   96 (253)
T PRK05867         88 DIAVCNAGI   96 (253)
T ss_pred             CEEEECCCC
Confidence            999999873

>PRK07831 short chain dehydrogenase; Provisional

Probab=97.08  E-value=0.0035  Score=57.62  Aligned_cols=84  Identities=18%  Similarity=0.204  Sum_probs=53.9

Q ss_pred             CCCCCCEEEEeCCCc-HHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH-cCCcEE----eChhh---HHH-Hhhhc
Q psy2960         210 SLSPGDVVIQNGANS-ACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADYV----FTEEE---LRN-ISRDA  279 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G-~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~-lg~~~v----~~~~d---~~~-i~~~t  279 (405)
                      .+..|+++||.|++| ++|.++++.+...|++|+++.++.++.+...+.+++ +|...+    .|..+   ... +.+..
T Consensus        13 ~~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~   92 (262)
T PRK07831         13 GLLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAV   92 (262)
T ss_pred             cccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHH
Confidence            345689999999986 899999999999999988877654443333333333 454333    13222   222 22211


Q ss_pred             -CCCCCcEEEECCCc
Q psy2960         280 -SIPKPKLALNCVGG  293 (405)
Q Consensus       280 -~g~g~Dvvld~~g~  293 (405)
                       ..+.+|+++++.|.
T Consensus        93 ~~~g~id~li~~ag~  107 (262)
T PRK07831         93 ERLGRLDVLVNNAGL  107 (262)
T ss_pred             HHcCCCCEEEECCCC
Confidence             12468999999984

>PRK05872 short chain dehydrogenase; Provisional

Probab=97.07  E-value=0.0019  Score=60.68  Aligned_cols=78  Identities=14%  Similarity=0.214  Sum_probs=51.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC--cEE---eChhh---HHH-HhhhcC-CC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA--DYV---FTEEE---LRN-ISRDAS-IP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~--~~v---~~~~d---~~~-i~~~t~-g~  282 (405)
                      .|+++||+|++|++|.++++.+...|++|+.+.++.++.   .+...+++.  +..   .|-.|   ... +.+... .+
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l---~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   84 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAEL---AALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFG   84 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999998887654332   233344442  211   23222   222 222211 24


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      .+|++|++.|.
T Consensus        85 ~id~vI~nAG~   95 (296)
T PRK05872         85 GIDVVVANAGI   95 (296)
T ss_pred             CCCEEEECCCc
Confidence            68999999984

>PRK09291 short chain dehydrogenase; Provisional

Probab=97.06  E-value=0.002  Score=58.95  Aligned_cols=78  Identities=18%  Similarity=0.175  Sum_probs=52.4

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhhHHHHhhhcCCCCCcEEEEC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEELRNISRDASIPKPKLALNC  290 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d~~~i~~~t~g~g~Dvvld~  290 (405)
                      +.+|||.|++|++|..+++.+...|++|++++++.+..+...+.....+....   .|..+...+.+.. ..++|++|++
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-~~~id~vi~~   80 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAA-EWDVDVLLNN   80 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHh-cCCCCEEEEC
Confidence            46899999999999999999999999999998765443333333344443211   2433433333322 2379999999


Q ss_pred             CC
Q psy2960         291 VG  292 (405)
Q Consensus       291 ~g  292 (405)
                      .|
T Consensus        81 ag   82 (257)
T PRK09291         81 AG   82 (257)
T ss_pred             CC
Confidence            87

>PRK08265 short chain dehydrogenase; Provisional

Probab=97.06  E-value=0.0041  Score=57.17  Aligned_cols=78  Identities=15%  Similarity=0.171  Sum_probs=50.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE-E--eCh---hhHHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-V--FTE---EELRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v--~~~---~d~~~-i~~~t-~g~g~  284 (405)
                      .+.+++|.|++|++|.+.+..+...|++|+.+.++.+..   .+..++++... +  .|-   ++... +.+.. ..+.+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i   81 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNG---AAVAASLGERARFIATDITDDAAIERAVATVVARFGRV   81 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            478999999999999999999999999998887664332   23333444321 1  232   22222 22211 12468


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        82 d~lv~~ag~   90 (261)
T PRK08265         82 DILVNLACT   90 (261)
T ss_pred             CEEEECCCC
Confidence            999999873

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=97.05  E-value=0.0017  Score=56.05  Aligned_cols=74  Identities=19%  Similarity=0.262  Sum_probs=51.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC---cEEeChhh------HHH-HhhhcCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA---DYVFTEEE------LRN-ISRDASIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~---~~v~~~~d------~~~-i~~~t~g~  282 (405)
                      -|.+|||.||++|+|++.++-...+|-+|+++-++.    ++++.+++.-.   ..+.|-.|      +.+ +++.  -.
T Consensus         4 tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e----~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~--~P   77 (245)
T COG3967           4 TGNTILITGGASGIGLALAKRFLELGNTVIICGRNE----ERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKE--YP   77 (245)
T ss_pred             cCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcH----HHHHHHHhcCcchheeeecccchhhHHHHHHHHHhh--CC
Confidence            488999999999999999999999999999887654    34555544321   23333222      223 3332  35


Q ss_pred             CCcEEEECCC
Q psy2960         283 KPKLALNCVG  292 (405)
Q Consensus       283 g~Dvvld~~g  292 (405)
                      ..++++|+.|
T Consensus        78 ~lNvliNNAG   87 (245)
T COG3967          78 NLNVLINNAG   87 (245)
T ss_pred             chheeeeccc
Confidence            6799999998

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.04  E-value=0.0094  Score=59.56  Aligned_cols=79  Identities=13%  Similarity=0.167  Sum_probs=52.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhh---HHH-Hhhhc-CCCCCcE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEE---LRN-ISRDA-SIPKPKL  286 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d---~~~-i~~~t-~g~g~Dv  286 (405)
                      +|+++||.|++|++|.+.++.+...|++++.+.++.. .+...+...+++...+ .|-.+   ... +.... ...++|+
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~-~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~  287 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAA-GEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDI  287 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCcc-HHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCCE
Confidence            5889999999999999999999999999988865432 2333344455665433 24322   222 22211 1246899


Q ss_pred             EEECCC
Q psy2960         287 ALNCVG  292 (405)
Q Consensus       287 vld~~g  292 (405)
                      +|++.|
T Consensus       288 vi~~AG  293 (450)
T PRK08261        288 VVHNAG  293 (450)
T ss_pred             EEECCC
Confidence            999998

>PRK12747 short chain dehydrogenase; Provisional

Probab=97.02  E-value=0.01  Score=54.13  Aligned_cols=104  Identities=13%  Similarity=0.169  Sum_probs=62.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEec-CCcchHHHHHHHHHcCCcEE---eC---hhhHHH----Hhh----
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVR-NRDDIDKLKSYLKSLGADYV---FT---EEELRN----ISR----  277 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~-~~~~~~~~~~~~~~lg~~~v---~~---~~d~~~----i~~----  277 (405)
                      .|.+++|.|++|++|.++++.+...|++++.+.+ +.+..++........+....   .|   .++...    +.+    
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQN   82 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhhh
Confidence            4789999999999999999999999999887653 32322222233333343221   12   122221    221    


Q ss_pred             hcCCCCCcEEEECCCchh--------------------------HHHHHHhcccCCEEEEEeccC
Q psy2960         278 DASIPKPKLALNCVGGNS--------------------------ATNLLRTLVSKGVMVTYGGMS  316 (405)
Q Consensus       278 ~t~g~g~Dvvld~~g~~~--------------------------~~~~~~~l~~~G~~v~~g~~~  316 (405)
                      ..+..++|+++++.|...                          +..++..+.+.|+++.++...
T Consensus        83 ~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~  147 (252)
T PRK12747         83 RTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAA  147 (252)
T ss_pred             hcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcc
Confidence            112247999999987310                          112344556779999998643

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=97.01  E-value=0.0022  Score=56.82  Aligned_cols=104  Identities=20%  Similarity=0.241  Sum_probs=64.4

Q ss_pred             HhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc--EEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHH-HhhhcCC
Q psy2960         206 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK--TINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRN-ISRDASI  281 (405)
Q Consensus       206 ~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~--v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~-i~~~t~g  281 (405)
                      .+...++||++||-.|+  |.|..++-+|+..|..  |+++-..++-.+...+.+..+|.+.| +...|... ...   .
T Consensus        65 l~~L~l~pg~~VLeIGt--GsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~---~  139 (209)
T PF01135_consen   65 LEALDLKPGDRVLEIGT--GSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPE---E  139 (209)
T ss_dssp             HHHTTC-TT-EEEEES---TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGG---G
T ss_pred             HHHHhcCCCCEEEEecC--CCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcccc---C
Confidence            34577999999999997  6689999999998863  44443332223333455556676533 22233222 222   3


Q ss_pred             CCCcEEEECCCchhHHH-HHHhcccCCEEEEEec
Q psy2960         282 PKPKLALNCVGGNSATN-LLRTLVSKGVMVTYGG  314 (405)
Q Consensus       282 ~g~Dvvld~~g~~~~~~-~~~~l~~~G~~v~~g~  314 (405)
                      ..||.|+-+.+-+.... .++.|++||+++..-.
T Consensus       140 apfD~I~v~~a~~~ip~~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  140 APFDRIIVTAAVPEIPEALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             -SEEEEEESSBBSS--HHHHHTEEEEEEEEEEES
T ss_pred             CCcCEEEEeeccchHHHHHHHhcCCCcEEEEEEc
Confidence            57999999888777754 5699999999998543

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK07814 short chain dehydrogenase; Provisional

Probab=97.01  E-value=0.0041  Score=57.21  Aligned_cols=80  Identities=15%  Similarity=0.251  Sum_probs=52.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc-EE--eChhh---HHH-Hhhh-cCCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YV--FTEEE---LRN-ISRD-ASIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~-~v--~~~~d---~~~-i~~~-t~g~g~  284 (405)
                      +|.++||.|++|++|.+.++.+...|++|+.+.++.+..++..+..+..+.. .+  .|..+   ... +.+. ...+++
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   88 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFGRL   88 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999999999999999999999999998887654433333333333432 12  23222   222 2221 112478


Q ss_pred             cEEEECCC
Q psy2960         285 KLALNCVG  292 (405)
Q Consensus       285 Dvvld~~g  292 (405)
                      |+++++.|
T Consensus        89 d~vi~~Ag   96 (263)
T PRK07814         89 DIVVNNVG   96 (263)
T ss_pred             CEEEECCC
Confidence            99999987

>PRK06949 short chain dehydrogenase; Provisional

Probab=96.99  E-value=0.0055  Score=56.00  Aligned_cols=82  Identities=18%  Similarity=0.305  Sum_probs=53.1

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc-EEe--Ch---hhHHH-Hhhh-cCCCC
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YVF--TE---EELRN-ISRD-ASIPK  283 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~-~v~--~~---~d~~~-i~~~-t~g~g  283 (405)
                      ..+++|+|.|++|++|.+++..+...|++|+++.++.++.+...+.++..+.. +++  |.   ++... +.+. .....
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   86 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAGT   86 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            35799999999999999999999999999998887655433333333333322 222  22   22222 2221 11346


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|++|++.|.
T Consensus        87 ~d~li~~ag~   96 (258)
T PRK06949         87 IDILVNNSGV   96 (258)
T ss_pred             CCEEEECCCC
Confidence            8999999983

>PRK08862 short chain dehydrogenase; Provisional

Probab=96.98  E-value=0.0045  Score=55.75  Aligned_cols=80  Identities=13%  Similarity=0.170  Sum_probs=53.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eC---hhhHHH-HhhhcC--CCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FT---EEELRN-ISRDAS--IPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~---~~d~~~-i~~~t~--g~g  283 (405)
                      .|.+++|.|+++++|.+.+..+...|++|+.+.++.+..++..+..++.+.+..   .|   .++... +.+...  +..
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   83 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNRA   83 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            578999999999999999999999999998887765554444444555554322   23   222322 222211  236


Q ss_pred             CcEEEECCC
Q psy2960         284 PKLALNCVG  292 (405)
Q Consensus       284 ~Dvvld~~g  292 (405)
                      +|+++++.|
T Consensus        84 iD~li~nag   92 (227)
T PRK08862         84 PDVLVNNWT   92 (227)
T ss_pred             CCEEEECCc
Confidence            999999986

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=96.98  E-value=0.0055  Score=56.01  Aligned_cols=81  Identities=20%  Similarity=0.203  Sum_probs=53.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChh---hHHH-Hhhh-cCCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEE---ELRN-ISRD-ASIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~---d~~~-i~~~-t~g~g~  284 (405)
                      .|.+|||.|++|++|.+.++.+...|++|+.+.++.++.++..+..++.|....   .|..   +... +.+. .....+
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   88 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGPI   88 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence            578999999999999999999988999998887665443334444444443221   1322   2222 2221 113568


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |++|++.|.
T Consensus        89 d~li~~ag~   97 (255)
T PRK07523         89 DILVNNAGM   97 (255)
T ss_pred             CEEEECCCC
Confidence            999999974

>PRK07326 short chain dehydrogenase; Provisional

Probab=96.97  E-value=0.0099  Score=53.55  Aligned_cols=81  Identities=12%  Similarity=0.207  Sum_probs=49.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe--Ch---hhHHH-Hhhhc-CCCCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TE---EELRN-ISRDA-SIPKPK  285 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~--~~---~d~~~-i~~~t-~g~g~D  285 (405)
                      ++.+|+|.||+|++|...++.+...|++|+++.++.+..++..+...+.+.-+++  |.   +++.. +.+.. ...++|
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   84 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGLD   84 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            4789999999999999999988888999998886643322222222211111122  22   22322 22221 124789


Q ss_pred             EEEECCCc
Q psy2960         286 LALNCVGG  293 (405)
Q Consensus       286 vvld~~g~  293 (405)
                      ++|++.|.
T Consensus        85 ~vi~~ag~   92 (237)
T PRK07326         85 VLIANAGV   92 (237)
T ss_pred             EEEECCCC
Confidence            99998864

>PRK08267 short chain dehydrogenase; Provisional

Probab=96.97  E-value=0.0078  Score=55.17  Aligned_cols=76  Identities=14%  Similarity=0.164  Sum_probs=48.6

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcC-Cc-EE--eChh---hHHH-HhhhcC--CCCC
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG-AD-YV--FTEE---ELRN-ISRDAS--IPKP  284 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg-~~-~v--~~~~---d~~~-i~~~t~--g~g~  284 (405)
                      +++||.||+|++|...++.+...|++|+.+.++.+..+   +....++ .. ++  .|-.   +..+ +.....  ...+
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~i   78 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLA---ALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRL   78 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHH---HHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            47999999999999999999899999999876644322   2222332 11 11  2322   2333 322211  3568


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++.|.|.
T Consensus        79 d~vi~~ag~   87 (260)
T PRK08267         79 DVLFNNAGI   87 (260)
T ss_pred             CEEEECCCC
Confidence            999999984

>PRK09186 flagellin modification protein A; Provisional

Probab=96.96  E-value=0.013  Score=53.47  Aligned_cols=80  Identities=19%  Similarity=0.274  Sum_probs=51.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHH-HcCCcE----EeChhh---HHH-Hhhhc-CCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGADY----VFTEEE---LRN-ISRDA-SIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~-~lg~~~----v~~~~d---~~~-i~~~t-~g~  282 (405)
                      .|.+|||.|++|++|...+..+...|++++.+.++.+..++..+.+. ..+...    ..|-.|   ... +.+.. ...
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~   82 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYG   82 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence            57899999999999999999999999999998876554333333332 223221    123222   322 22221 124


Q ss_pred             CCcEEEECCC
Q psy2960         283 KPKLALNCVG  292 (405)
Q Consensus       283 g~Dvvld~~g  292 (405)
                      ++|+++++.+
T Consensus        83 ~id~vi~~A~   92 (256)
T PRK09186         83 KIDGAVNCAY   92 (256)
T ss_pred             CccEEEECCc
Confidence            6899999985

>PRK07985 oxidoreductase; Provisional

Probab=96.96  E-value=0.013  Score=54.96  Aligned_cols=81  Identities=12%  Similarity=0.097  Sum_probs=50.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc--chHHHHHHHHHcCCcEE---eChh---hHHH-Hhhhc-CCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD--DIDKLKSYLKSLGADYV---FTEE---ELRN-ISRDA-SIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~--~~~~~~~~~~~lg~~~v---~~~~---d~~~-i~~~t-~g~  282 (405)
                      .|.++||.|++|++|.+.++.+...|++|+.+.++.+  ..++..+..++.|....   .|-.   +... +.+.. ..+
T Consensus        48 ~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g  127 (294)
T PRK07985         48 KDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKALG  127 (294)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            5789999999999999999999999999987654322  22223333344454321   2322   2222 22221 135


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      ++|+++++.|.
T Consensus       128 ~id~lv~~Ag~  138 (294)
T PRK07985        128 GLDIMALVAGK  138 (294)
T ss_pred             CCCEEEECCCC
Confidence            78999998873

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=96.95  E-value=0.0076  Score=54.69  Aligned_cols=81  Identities=15%  Similarity=0.165  Sum_probs=51.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc-chHHHHHHHHHcCCcEE---eChhh---HHH-Hhhhc-CCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD-DIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDA-SIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~-~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t-~g~g  283 (405)
                      .+.++||.|++|++|...++.+...|++++...+..+ ...+..+..+..+....   .|..+   ... +.+.. ..++
T Consensus         2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (246)
T PRK12938          2 SQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVGE   81 (246)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            4678999999999999999999999999888664322 22223344444555433   23222   222 22211 1247


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|+++++.|.
T Consensus        82 id~li~~ag~   91 (246)
T PRK12938         82 IDVLVNNAGI   91 (246)
T ss_pred             CCEEEECCCC
Confidence            8999999984

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.94  E-value=0.014  Score=53.63  Aligned_cols=80  Identities=11%  Similarity=0.187  Sum_probs=48.6

Q ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc-CCcE-E--eC---hhhHHH-HhhhcC-C
Q psy2960         213 PGDVVIQNGAN--SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADY-V--FT---EEELRN-ISRDAS-I  281 (405)
Q Consensus       213 ~g~~VLI~ga~--G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l-g~~~-v--~~---~~d~~~-i~~~t~-g  281 (405)
                      .|++++|.|++  +|+|.++++.....|++|+.+.++....+...+...++ +... .  .|   .++... +.+... -
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~   85 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEEV   85 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHhC
Confidence            57899999997  79999999988889999988765422112222233333 2211 1  23   222333 332221 2


Q ss_pred             CCCcEEEECCC
Q psy2960         282 PKPKLALNCVG  292 (405)
Q Consensus       282 ~g~Dvvld~~g  292 (405)
                      +.+|+++++.|
T Consensus        86 g~ld~lv~nag   96 (257)
T PRK08594         86 GVIHGVAHCIA   96 (257)
T ss_pred             CCccEEEECcc
Confidence            46899999886

>PRK06172 short chain dehydrogenase; Provisional

Probab=96.93  E-value=0.0055  Score=55.92  Aligned_cols=81  Identities=15%  Similarity=0.244  Sum_probs=54.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eCh---hhHHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTE---EELRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~---~d~~~-i~~~t-~g~g~  284 (405)
                      .+.+++|.|++|++|...++.+...|++|+.+.++.+..+...+.+.+.+....   .|.   ++... +.+.. ..+.+
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~i   85 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGRL   85 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence            578999999999999999998888999999998776554444455555554321   122   22222 22111 12468


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        86 d~li~~ag~   94 (253)
T PRK06172         86 DYAFNNAGI   94 (253)
T ss_pred             CEEEECCCC
Confidence            999999874

>PRK07062 short chain dehydrogenase; Provisional

Probab=96.91  E-value=0.0048  Score=56.74  Aligned_cols=81  Identities=12%  Similarity=0.175  Sum_probs=52.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc-CCcEE----eChhh---HHH-Hhhhc-CCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADYV----FTEEE---LRN-ISRDA-SIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l-g~~~v----~~~~d---~~~-i~~~t-~g~  282 (405)
                      .|++++|.||++++|.+.++.+...|++|+.+.++.++.+...+.+.+. +...+    .|-.+   ... +.+.. ..+
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   86 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG   86 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            5789999999999999999999999999998887755433333333332 21121    23222   222 22221 124


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      .+|+++++.|.
T Consensus        87 ~id~li~~Ag~   97 (265)
T PRK07062         87 GVDMLVNNAGQ   97 (265)
T ss_pred             CCCEEEECCCC
Confidence            68999999983

>PRK06194 hypothetical protein; Provisional

Probab=96.91  E-value=0.0045  Score=57.69  Aligned_cols=81  Identities=21%  Similarity=0.316  Sum_probs=51.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-e--Chh---hHHH-Hhhh-cCCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-F--TEE---ELRN-ISRD-ASIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~--~~~---d~~~-i~~~-t~g~g~  284 (405)
                      .+.++||.||+|++|...+..+...|++|+.+.++.+..++..+.+...+.... +  |-.   +... +... ...+++
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~i   84 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGAV   84 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            468999999999999999999989999998887654433333333333343321 2  322   2222 2211 113468


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        85 d~vi~~Ag~   93 (287)
T PRK06194         85 HLLFNNAGV   93 (287)
T ss_pred             CEEEECCCC
Confidence            999999984

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=96.90  E-value=0.0043  Score=52.58  Aligned_cols=79  Identities=22%  Similarity=0.325  Sum_probs=50.0

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC---cchHHHHHHHHHcCCcEEe---C---hhhHHH-Hhhhc-CCCC
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNR---DDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDA-SIPK  283 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~---~~~~~~~~~~~~lg~~~v~---~---~~d~~~-i~~~t-~g~g  283 (405)
                      ++|||.||++++|.+.++.+...|+.+++.++..   +..+...+.++..+....+   |   .++... +.+.. ....
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP   80 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4799999999999999988888888666666544   3333344555656643222   2   122222 22221 2457


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|++|+|.|.
T Consensus        81 ld~li~~ag~   90 (167)
T PF00106_consen   81 LDILINNAGI   90 (167)
T ss_dssp             ESEEEEECSC
T ss_pred             cccccccccc
Confidence            8999999884

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK06500 short chain dehydrogenase; Provisional

Probab=96.87  E-value=0.014  Score=52.93  Aligned_cols=78  Identities=14%  Similarity=0.133  Sum_probs=50.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t-~g~g~  284 (405)
                      +|.+|+|.||+|++|.+.++.+...|++++.+.++.+.   ..+...+++....   .|..+   ... +.... ...++
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~---~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   81 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAEGARVAITGRDPAS---LEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRL   81 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHH---HHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            57899999999999999999999999999888765432   2233345554322   13222   222 22111 13468


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        82 d~vi~~ag~   90 (249)
T PRK06500         82 DAVFINAGV   90 (249)
T ss_pred             CEEEECCCC
Confidence            999999873

>PRK08628 short chain dehydrogenase; Provisional

Probab=96.87  E-value=0.0034  Score=57.48  Aligned_cols=80  Identities=18%  Similarity=0.179  Sum_probs=52.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH-HhhhcC-CCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDAS-IPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t~-g~g~  284 (405)
                      .|.++||.||+|++|...++.+...|++++.+.++.+.. +..+.+++.+....   .|-.+   ... +.+... ..++
T Consensus         6 ~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (258)
T PRK08628          6 KDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFGRI   84 (258)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence            478999999999999999999999999999888765443 33344444454321   12222   222 222211 2478


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |++|.+.|.
T Consensus        85 d~vi~~ag~   93 (258)
T PRK08628         85 DGLVNNAGV   93 (258)
T ss_pred             CEEEECCcc
Confidence            999999983

>PRK06181 short chain dehydrogenase; Provisional

Probab=96.86  E-value=0.0027  Score=58.36  Aligned_cols=80  Identities=20%  Similarity=0.261  Sum_probs=52.8

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Chhh---HHH-Hhhhc-CCCCCc
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEEE---LRN-ISRDA-SIPKPK  285 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~d---~~~-i~~~t-~g~g~D  285 (405)
                      +.+|||.|++|++|..+++.+...|++|+++.++.++.+...+.++..+....+   |..+   ... +.+.. ...++|
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   80 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGID   80 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            468999999999999999999999999999987755444444444455543222   3222   222 22211 124689


Q ss_pred             EEEECCCc
Q psy2960         286 LALNCVGG  293 (405)
Q Consensus       286 vvld~~g~  293 (405)
                      +|+.|.|.
T Consensus        81 ~vi~~ag~   88 (263)
T PRK06181         81 ILVNNAGI   88 (263)
T ss_pred             EEEECCCc
Confidence            99999873

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=96.86  E-value=0.007  Score=58.94  Aligned_cols=110  Identities=15%  Similarity=0.173  Sum_probs=70.6

Q ss_pred             cCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc-EE-eChh
Q psy2960         193 GITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YV-FTEE  270 (405)
Q Consensus       193 ~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~-~v-~~~~  270 (405)
                      ++..+....+..+.+..++++|++||-.|+  |.|..+..+++..|++|+++.-+++.    ++.+++.... .+ +...
T Consensus       147 ~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGc--G~G~~a~~la~~~g~~V~giDlS~~~----l~~A~~~~~~l~v~~~~~  220 (383)
T PRK11705        147 TLEEAQEAKLDLICRKLQLKPGMRVLDIGC--GWGGLARYAAEHYGVSVVGVTISAEQ----QKLAQERCAGLPVEIRLQ  220 (383)
T ss_pred             CHHHHHHHHHHHHHHHhCCCCCCEEEEeCC--CccHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHHhccCeEEEEEC
Confidence            344445556666667788999999999998  57888999999999999888655443    4444433211 11 1111


Q ss_pred             hHHHHhhhcCCCCCcEEEEC-----CCch----hHHHHHHhcccCCEEEEEe
Q psy2960         271 ELRNISRDASIPKPKLALNC-----VGGN----SATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       271 d~~~i~~~t~g~g~Dvvld~-----~g~~----~~~~~~~~l~~~G~~v~~g  313 (405)
                      |.   ...  ...+|.|+..     +|..    .+....+.|+|+|+++...
T Consensus       221 D~---~~l--~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        221 DY---RDL--NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             ch---hhc--CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            22   111  2468988743     3432    2345678999999998754

>PRK07677 short chain dehydrogenase; Provisional

Probab=96.86  E-value=0.0063  Score=55.55  Aligned_cols=80  Identities=15%  Similarity=0.257  Sum_probs=51.6

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE-Ee--Ch---hhHHH-Hhhhc-CCCCCc
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-VF--TE---EELRN-ISRDA-SIPKPK  285 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v~--~~---~d~~~-i~~~t-~g~g~D  285 (405)
                      |+++||.|++|++|.+.++.+...|++++.+.++.+..++..+.+++.+... .+  |-   ++... +.+.. ..+.+|
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRID   80 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCcc
Confidence            5789999999999999999999999999888776544333333444444322 22  22   22222 22211 124689


Q ss_pred             EEEECCCc
Q psy2960         286 LALNCVGG  293 (405)
Q Consensus       286 vvld~~g~  293 (405)
                      +++++.|.
T Consensus        81 ~lI~~ag~   88 (252)
T PRK07677         81 ALINNAAG   88 (252)
T ss_pred             EEEECCCC
Confidence            99999873

>PRK05854 short chain dehydrogenase; Provisional

Probab=96.85  E-value=0.005  Score=58.37  Aligned_cols=81  Identities=17%  Similarity=0.155  Sum_probs=52.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc-C-CcE-E--eChhh---HHH-Hhhhc-CCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-G-ADY-V--FTEEE---LRN-ISRDA-SIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l-g-~~~-v--~~~~d---~~~-i~~~t-~g~  282 (405)
                      .|.+++|.||++|+|.+++..+...|++|+.++++.++.++..+.+.+. + ... +  .|-.+   ... +.+.. ...
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~   92 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR   92 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            4789999999999999999998889999999988765544444433332 2 111 1  23322   222 22211 135


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      .+|++|++.|.
T Consensus        93 ~iD~li~nAG~  103 (313)
T PRK05854         93 PIHLLINNAGV  103 (313)
T ss_pred             CccEEEECCcc
Confidence            78999998873

>PRK05876 short chain dehydrogenase; Provisional

Probab=96.85  E-value=0.0033  Score=58.41  Aligned_cols=81  Identities=15%  Similarity=0.153  Sum_probs=52.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eCh---hhHHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTE---EELRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~---~d~~~-i~~~t-~g~g~  284 (405)
                      .|.++||.|++|++|.+.+..+...|++|+.+.++.+..++..+.++..|.+..   .|-   ++... +.+.. ..+.+
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   84 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLGHV   84 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            578999999999999999999999999998887665443333344444454322   232   22222 22211 12468


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        85 d~li~nAg~   93 (275)
T PRK05876         85 DVVFSNAGI   93 (275)
T ss_pred             CEEEECCCc
Confidence            999999873

>PRK06914 short chain dehydrogenase; Provisional

Probab=96.84  E-value=0.013  Score=54.34  Aligned_cols=81  Identities=21%  Similarity=0.204  Sum_probs=52.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC--c-EE--eChhhHHH---Hhhh-cCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA--D-YV--FTEEELRN---ISRD-ASIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~--~-~v--~~~~d~~~---i~~~-t~g~g  283 (405)
                      .+.++||.||+|++|...+..+...|++|+++.++.+..+...+.....+.  . .+  .|..|.+.   +.+. ...++
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~   81 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR   81 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence            367899999999999999999888999999988775544443333443332  1 11  23333222   1111 11346


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|+++.|.|.
T Consensus        82 id~vv~~ag~   91 (280)
T PRK06914         82 IDLLVNNAGY   91 (280)
T ss_pred             eeEEEECCcc
Confidence            8999999874

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=96.84  E-value=0.02  Score=52.39  Aligned_cols=80  Identities=21%  Similarity=0.350  Sum_probs=51.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t-~g~g~  284 (405)
                      .+.++||.||+|++|.+.++.+...|++|+.+.++. ..+...+.+...+.+..   .|..+   ... +.+.. ...++
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~-~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   85 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSE-LVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFGRI   85 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCch-HHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence            478999999999999999999999999998877553 22233333344454322   23222   222 22221 12469


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        86 d~lv~nAg~   94 (260)
T PRK12823         86 DVLINNVGG   94 (260)
T ss_pred             eEEEECCcc
Confidence            999999873

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.84  E-value=0.0064  Score=56.34  Aligned_cols=81  Identities=14%  Similarity=0.157  Sum_probs=51.2

Q ss_pred             CCCEEEEeCCCc--HHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe--Ch---hhHHH-HhhhcC-CCC
Q psy2960         213 PGDVVIQNGANS--ACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TE---EELRN-ISRDAS-IPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G--~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~--~~---~d~~~-i~~~t~-g~g  283 (405)
                      .|+++||.|+++  |+|.+.++.+...|++|+.+.++.+..+...+...++|....+  |-   ++... +.+... .+.
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   85 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKWGK   85 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence            578999999986  9999999999999999988765432212222333445543322  32   22332 222211 247


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|+++++.|.
T Consensus        86 iD~lVnnAG~   95 (271)
T PRK06505         86 LDFVVHAIGF   95 (271)
T ss_pred             CCEEEECCcc
Confidence            9999999873

>PRK12937 short chain dehydrogenase; Provisional

Probab=96.83  E-value=0.011  Score=53.55  Aligned_cols=81  Identities=14%  Similarity=0.183  Sum_probs=51.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcc-hHHHHHHHHHcCCcEE-e--Chh---hHHH-Hhhhc-CCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYLKSLGADYV-F--TEE---ELRN-ISRDA-SIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~-~~~~~~~~~~lg~~~v-~--~~~---d~~~-i~~~t-~g~g  283 (405)
                      ++.++||+|++|++|...++.....|++++.+.++.+. .+...+.+...+.... +  |-.   +..+ +.+.. ..++
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFGR   83 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999999999998887755432 1223334444443222 1  222   2222 22211 1246


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|++|.+.|.
T Consensus        84 id~vi~~ag~   93 (245)
T PRK12937         84 IDVLVNNAGV   93 (245)
T ss_pred             CCEEEECCCC
Confidence            8999999873

>PRK08589 short chain dehydrogenase; Validated

Probab=96.82  E-value=0.0082  Score=55.57  Aligned_cols=80  Identities=15%  Similarity=0.190  Sum_probs=52.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE-E--eChh---hHHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-V--FTEE---ELRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v--~~~~---d~~~-i~~~t-~g~g~  284 (405)
                      .|+++||.|+++++|.+.++.+...|++|+.+.++ +..++..+.+++.+... .  .|-.   +... +.+.. ..+.+
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i   83 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGRV   83 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence            57899999999999999999888899999999876 44344444444444321 1  2322   2222 22211 12468


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        84 d~li~~Ag~   92 (272)
T PRK08589         84 DVLFNNAGV   92 (272)
T ss_pred             CEEEECCCC
Confidence            999999873

>PRK07890 short chain dehydrogenase; Provisional

Probab=96.81  E-value=0.0072  Score=55.24  Aligned_cols=81  Identities=16%  Similarity=0.215  Sum_probs=52.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE---EeChh---hHHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY---VFTEE---ELRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~---v~~~~---d~~~-i~~~t-~g~g~  284 (405)
                      ++.+|+|.||+|++|.+.+..+...|++|+.+.++.+..+...+.....+...   ..|-.   +... +.+.. .-+.+
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   83 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGRV   83 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCCc
Confidence            57899999999999999999999999999988876544333333333334321   12322   2222 22211 12468


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++.+.|.
T Consensus        84 d~vi~~ag~   92 (258)
T PRK07890         84 DALVNNAFR   92 (258)
T ss_pred             cEEEECCcc
Confidence            999998873

>PRK07791 short chain dehydrogenase; Provisional

Probab=96.81  E-value=0.01  Score=55.46  Aligned_cols=82  Identities=16%  Similarity=0.134  Sum_probs=52.0

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC---------cchHHHHHHHHHcCCcEEe---Ch---hhHHH-H
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR---------DDIDKLKSYLKSLGADYVF---TE---EELRN-I  275 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~---------~~~~~~~~~~~~lg~~~v~---~~---~d~~~-i  275 (405)
                      -.|.++||.||++++|.+.++.+...|++++++.++.         +..+...+.++..|....+   |-   ++... +
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~   83 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV   83 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence            4688999999999999999998888999998876543         2222333333344443221   32   22222 2


Q ss_pred             hhhc-CCCCCcEEEECCCc
Q psy2960         276 SRDA-SIPKPKLALNCVGG  293 (405)
Q Consensus       276 ~~~t-~g~g~Dvvld~~g~  293 (405)
                      .+.. ..+.+|+++++.|.
T Consensus        84 ~~~~~~~g~id~lv~nAG~  102 (286)
T PRK07791         84 DAAVETFGGLDVLVNNAGI  102 (286)
T ss_pred             HHHHHhcCCCCEEEECCCC
Confidence            2221 12468999999874

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=96.80  E-value=0.0078  Score=55.14  Aligned_cols=81  Identities=14%  Similarity=0.282  Sum_probs=52.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE-E--eChhh---HHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-V--FTEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v--~~~~d---~~~-i~~~t-~g~g~  284 (405)
                      +|.++||.|++|++|...++.+...|++|+.+.++.++.+...+.....+... +  .|..|   ... +.+.. ...++
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~i   90 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGHV   90 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            57899999999999999999998899999888876544333333334444321 1  23222   222 22211 12468


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++.+.|.
T Consensus        91 d~vi~~ag~   99 (259)
T PRK08213         91 DILVNNAGA   99 (259)
T ss_pred             CEEEECCCC
Confidence            999999874

>PRK07035 short chain dehydrogenase; Provisional

Probab=96.79  E-value=0.0079  Score=54.82  Aligned_cols=81  Identities=14%  Similarity=0.247  Sum_probs=52.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE-Ee--Ch---hhHHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-VF--TE---EELRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v~--~~---~d~~~-i~~~t-~g~g~  284 (405)
                      .+.+|||.|++|++|.+.++.+...|++|+.+.++.+..+...+.+.+.+... .+  |.   ++... +.+.. .-..+
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   86 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHGRL   86 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            46799999999999999999999999999988876544344444444444322 12  22   22222 22221 12358


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        87 d~li~~ag~   95 (252)
T PRK07035         87 DILVNNAAA   95 (252)
T ss_pred             CEEEECCCc
Confidence            999998873

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=96.79  E-value=0.011  Score=54.19  Aligned_cols=80  Identities=18%  Similarity=0.241  Sum_probs=52.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChh---hHHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEE---ELRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~---d~~~-i~~~t-~g~g~  284 (405)
                      .|.+|||.||+|++|.+.++.+...|++|+.+.++ +..+...+...+.+.+..   .|-.   +... +.+.. ..+++
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~i   92 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFGKI   92 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            57899999999999999999999999999988876 333333444445554321   2322   2222 22221 12468


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++.+.|.
T Consensus        93 d~li~~ag~  101 (258)
T PRK06935         93 DILVNNAGT  101 (258)
T ss_pred             CEEEECCCC
Confidence            999999873

>PRK07454 short chain dehydrogenase; Provisional

Probab=96.79  E-value=0.0079  Score=54.42  Aligned_cols=82  Identities=18%  Similarity=0.230  Sum_probs=53.1

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE-E--eChh---hHHH-Hhhhc-CCCC
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-V--FTEE---ELRN-ISRDA-SIPK  283 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v--~~~~---d~~~-i~~~t-~g~g  283 (405)
                      ..+.++||.|++|++|..++..+...|++|+++.++.++.++..+..++.+... +  .|-.   +... +.+.. ..+.
T Consensus         4 ~~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (241)
T PRK07454          4 NSMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGC   83 (241)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            346789999999999999999999999999998876554333334344444322 1  2322   2222 22211 1246


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|+++++.|.
T Consensus        84 id~lv~~ag~   93 (241)
T PRK07454         84 PDVLINNAGM   93 (241)
T ss_pred             CCEEEECCCc
Confidence            8999999984

>PRK07060 short chain dehydrogenase; Provisional

Probab=96.78  E-value=0.007  Score=54.80  Aligned_cols=78  Identities=18%  Similarity=0.253  Sum_probs=51.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhc-CCCCCcEEEEC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDA-SIPKPKLALNC  290 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t-~g~g~Dvvld~  290 (405)
                      .+.+++|+|++|++|...++.+...|++|+.+.++.++.   .+.....+...+ .|..+...+.+.. ...++|++|++
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~---~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~   84 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAAL---DRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNC   84 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEEC
Confidence            578999999999999999999999999988887664332   233334454333 3433322222211 13468999999


Q ss_pred             CCc
Q psy2960         291 VGG  293 (405)
Q Consensus       291 ~g~  293 (405)
                      .|.
T Consensus        85 ag~   87 (245)
T PRK07060         85 AGI   87 (245)
T ss_pred             CCC
Confidence            974

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=96.77  E-value=0.0086  Score=55.54  Aligned_cols=80  Identities=18%  Similarity=0.253  Sum_probs=52.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eCh---hhHHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTE---EELRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~---~d~~~-i~~~t-~g~g~  284 (405)
                      .+.+++|.|++|++|.+.+..+...|++|+.+.++.+..+...+.+.+.+....   .|.   ++... +.+.. ..+++
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i   88 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGPC   88 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            578999999999999999999999999998888765444444444444444321   122   22222 22211 12478


Q ss_pred             cEEEECCC
Q psy2960         285 KLALNCVG  292 (405)
Q Consensus       285 Dvvld~~g  292 (405)
                      |++|++.|
T Consensus        89 d~li~~ag   96 (278)
T PRK08277         89 DILINGAG   96 (278)
T ss_pred             CEEEECCC
Confidence            99999987

>PRK12829 short chain dehydrogenase; Provisional

Probab=96.77  E-value=0.011  Score=54.22  Aligned_cols=40  Identities=15%  Similarity=0.109  Sum_probs=34.7

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD  249 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~  249 (405)
                      ..-++.++||.|++|++|..++..+...|++|+.+.++.+
T Consensus         7 ~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~   46 (264)
T PRK12829          7 KPLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEA   46 (264)
T ss_pred             hccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            3357899999999999999999999999999988887644

>KOG1201|consensus

Probab=96.77  E-value=0.013  Score=53.81  Aligned_cols=78  Identities=18%  Similarity=0.347  Sum_probs=56.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc--EEeC---hhhHHH----HhhhcCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YVFT---EEELRN----ISRDASIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~--~v~~---~~d~~~----i~~~t~g~g  283 (405)
                      .|+.|||.||++|+|.+.++=...+|++++...-+.+..++-.+..++.|.-  .+.|   .++..+    +++.  -+.
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e--~G~  114 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKE--VGD  114 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHh--cCC
Confidence            6999999999999999999888889997766665555666677777777632  2223   233322    4444  347


Q ss_pred             CcEEEECCC
Q psy2960         284 PKLALNCVG  292 (405)
Q Consensus       284 ~Dvvld~~g  292 (405)
                      +|+++|.+|
T Consensus       115 V~ILVNNAG  123 (300)
T KOG1201|consen  115 VDILVNNAG  123 (300)
T ss_pred             ceEEEeccc
Confidence            999999988

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.76  E-value=0.012  Score=52.48  Aligned_cols=103  Identities=23%  Similarity=0.207  Sum_probs=63.5

Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcC--CcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCC
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPK  283 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G--~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g  283 (405)
                      ....+++|++||-.|+  |.|..+..+++..+  .+++++-.+++..+...+.+...|.+++ +-..|...  .......
T Consensus        70 ~~l~~~~g~~VLdIG~--GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~--~~~~~~~  145 (212)
T PRK13942         70 ELLDLKEGMKVLEIGT--GSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTL--GYEENAP  145 (212)
T ss_pred             HHcCCCCcCEEEEECC--cccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCccc--CCCcCCC
Confidence            4467899999999998  66888889998876  4666664443333333344445565432 11112111  0112357


Q ss_pred             CcEEEECCCchhH-HHHHHhcccCCEEEEEe
Q psy2960         284 PKLALNCVGGNSA-TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       284 ~Dvvld~~g~~~~-~~~~~~l~~~G~~v~~g  313 (405)
                      +|+|+-+...... ...++.|+++|+++..-
T Consensus       146 fD~I~~~~~~~~~~~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        146 YDRIYVTAAGPDIPKPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             cCEEEECCCcccchHHHHHhhCCCcEEEEEE
Confidence            9998765444444 45679999999988753

>PRK07063 short chain dehydrogenase; Provisional

Probab=96.74  E-value=0.01  Score=54.44  Aligned_cols=81  Identities=12%  Similarity=0.132  Sum_probs=52.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH--cCCcE-E--eCh---hhHHH-Hhhhc-CCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS--LGADY-V--FTE---EELRN-ISRDA-SIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~--lg~~~-v--~~~---~d~~~-i~~~t-~g~  282 (405)
                      .+++++|.|++|++|.++++.+...|++|+.+.++.+..++..+.++.  .+... +  .|.   ++... +.+.. ..+
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   85 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG   85 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            478999999999999999999999999999888765544433344433  23221 1  132   22222 22211 124


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      ++|+++++.|.
T Consensus        86 ~id~li~~ag~   96 (260)
T PRK07063         86 PLDVLVNNAGI   96 (260)
T ss_pred             CCcEEEECCCc
Confidence            68999999883

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=96.74  E-value=0.0083  Score=55.24  Aligned_cols=81  Identities=16%  Similarity=0.192  Sum_probs=53.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t-~g~g~  284 (405)
                      .+.+++|.|+++++|.+.+..+...|++++.+.++.++.++..+..+..|....   .|-.+   ... +.+.. .-..+
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   88 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGVI   88 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence            578999999999999999988888999998887765554444444555554322   23222   222 22211 12468


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++.+.|.
T Consensus        89 d~li~~ag~   97 (265)
T PRK07097         89 DILVNNAGI   97 (265)
T ss_pred             CEEEECCCC
Confidence            999999874

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=96.74  E-value=0.02  Score=53.05  Aligned_cols=104  Identities=17%  Similarity=0.155  Sum_probs=62.4

Q ss_pred             HHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCC
Q psy2960         203 RMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIP  282 (405)
Q Consensus       203 ~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~  282 (405)
                      .++........+.+++|.|+ |++|.+++..+...|++++++.++.++.++..+.+...|.......++.       ...
T Consensus       106 ~~l~~~~~~~~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~-------~~~  177 (270)
T TIGR00507       106 SDLERLIPLRPNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDEL-------PLH  177 (270)
T ss_pred             HHHHhcCCCccCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhh-------ccc
Confidence            33433233456889999999 8999999988888899877776554433333333333333222222110       013


Q ss_pred             CCcEEEECCCchhH---H---HHHHhcccCCEEEEEec
Q psy2960         283 KPKLALNCVGGNSA---T---NLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       283 g~Dvvld~~g~~~~---~---~~~~~l~~~G~~v~~g~  314 (405)
                      .+|+||+|++....   .   -....++++..++.+..
T Consensus       178 ~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y  215 (270)
T TIGR00507       178 RVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVY  215 (270)
T ss_pred             CccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEecc
Confidence            58999999985321   1   12355777777777753

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK08643 acetoin reductase; Validated

Probab=96.73  E-value=0.011  Score=53.99  Aligned_cols=80  Identities=14%  Similarity=0.159  Sum_probs=52.1

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Chh---hHHH-Hhhhc-CCCCCc
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEE---ELRN-ISRDA-SIPKPK  285 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~---d~~~-i~~~t-~g~g~D  285 (405)
                      |+++||.|++|++|...++.+...|++|+.+.++.+..+.....+.+.+....+   |-.   +..+ +.+.. ..+++|
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   81 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDLN   81 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            578999999999999999999999999999887655433333444444433221   222   2222 22211 124689


Q ss_pred             EEEECCCc
Q psy2960         286 LALNCVGG  293 (405)
Q Consensus       286 vvld~~g~  293 (405)
                      ++|.+.|.
T Consensus        82 ~vi~~ag~   89 (256)
T PRK08643         82 VVVNNAGV   89 (256)
T ss_pred             EEEECCCC
Confidence            99999864

>PRK06701 short chain dehydrogenase; Provisional

Probab=96.72  E-value=0.013  Score=54.81  Aligned_cols=81  Identities=12%  Similarity=0.220  Sum_probs=51.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcc-hHHHHHHHHHcCCcEEe---Chh---hHHH-Hhhhc-CCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYLKSLGADYVF---TEE---ELRN-ISRDA-SIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~-~~~~~~~~~~lg~~~v~---~~~---d~~~-i~~~t-~g~g  283 (405)
                      .|.++||.|++|++|...+..+...|++|+.+.++.+. .+...+.+...|.+..+   |-.   +... +.+.. ...+
T Consensus        45 ~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~  124 (290)
T PRK06701         45 KGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGR  124 (290)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999888899999888765432 22233333344433222   322   2222 22211 1246


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|++|.+.|.
T Consensus       125 iD~lI~~Ag~  134 (290)
T PRK06701        125 LDILVNNAAF  134 (290)
T ss_pred             CCEEEECCcc
Confidence            8999998874

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=96.72  E-value=0.0076  Score=47.37  Aligned_cols=95  Identities=17%  Similarity=0.219  Sum_probs=58.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHH-HcCCcEEEEecCCcchHHHHHHHHHcC--CcEEeChhhHHHHhhhcCCCCCcEEEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIAR-HWGLKTINIVRNRDDIDKLKSYLKSLG--ADYVFTEEELRNISRDASIPKPKLALN  289 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~-~~G~~v~~~~~~~~~~~~~~~~~~~lg--~~~v~~~~d~~~i~~~t~g~g~Dvvld  289 (405)
                      ||.+||-.|+  |.|..++.+++ ..+++++++--+++..+...+.+.+.+  ....+-..|+ . .......++|+|+.
T Consensus         1 p~~~vLDlGc--G~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~-~~~~~~~~~D~v~~   76 (112)
T PF12847_consen    1 PGGRVLDLGC--GTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-E-FDPDFLEPFDLVIC   76 (112)
T ss_dssp             TTCEEEEETT--TTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-H-GGTTTSSCEEEEEE
T ss_pred             CCCEEEEEcC--cCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-c-cCcccCCCCCEEEE
Confidence            6899999998  56999999999 478888888544433333333332222  2222222333 1 11122456999998


Q ss_pred             CC-Cch----h------HHHHHHhcccCCEEEE
Q psy2960         290 CV-GGN----S------ATNLLRTLVSKGVMVT  311 (405)
Q Consensus       290 ~~-g~~----~------~~~~~~~l~~~G~~v~  311 (405)
                      .. ...    .      +....+.|+|+|+++.
T Consensus        77 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi  109 (112)
T PF12847_consen   77 SGFTLHFLLPLDERRRVLERIRRLLKPGGRLVI  109 (112)
T ss_dssp             CSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence            77 221    1      3456789999999875

...

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=96.72  E-value=0.009  Score=54.79  Aligned_cols=78  Identities=19%  Similarity=0.253  Sum_probs=50.2

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe--Ch---hhHHH-Hhhhc-CCCCCcEEE
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TE---EELRN-ISRDA-SIPKPKLAL  288 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~--~~---~d~~~-i~~~t-~g~g~Dvvl  288 (405)
                      ++||.|+++++|.+.++.+...|++|+.+.++.+..++..+.+.+.+.-+.+  |-   ++... +.+.. ...++|+++
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~li   81 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDALV   81 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence            6999999999999999999999999988877654433333333333422222  32   22333 22221 134689999


Q ss_pred             ECCCc
Q psy2960         289 NCVGG  293 (405)
Q Consensus       289 d~~g~  293 (405)
                      ++.|.
T Consensus        82 ~naG~   86 (259)
T PRK08340         82 WNAGN   86 (259)
T ss_pred             ECCCC
Confidence            99874

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.70  E-value=0.019  Score=52.43  Aligned_cols=77  Identities=14%  Similarity=0.211  Sum_probs=48.2

Q ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc--EE--eC---hhhHHH-Hhhhc-CC
Q psy2960         213 PGDVVIQNGAN--SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YV--FT---EEELRN-ISRDA-SI  281 (405)
Q Consensus       213 ~g~~VLI~ga~--G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~--~v--~~---~~d~~~-i~~~t-~g  281 (405)
                      .|++++|.|++  +|+|.+.++.+...|++|+.+.++ ++.+   +.+.++...  ..  .|   .++..+ +.+.. ..
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~-~~~~---~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   81 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQN-DRMK---KSLQKLVDEEDLLVECDVASDESIERAFATIKERV   81 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCc-hHHH---HHHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHh
Confidence            57899999998  799999999998999999988654 2222   222333211  11  23   222332 22221 12


Q ss_pred             CCCcEEEECCCc
Q psy2960         282 PKPKLALNCVGG  293 (405)
Q Consensus       282 ~g~Dvvld~~g~  293 (405)
                      +.+|+++++.|.
T Consensus        82 g~iD~lv~nAg~   93 (252)
T PRK06079         82 GKIDGIVHAIAY   93 (252)
T ss_pred             CCCCEEEEcccc
Confidence            469999998873

>PRK08303 short chain dehydrogenase; Provisional

Probab=96.70  E-value=0.012  Score=55.65  Aligned_cols=80  Identities=18%  Similarity=0.284  Sum_probs=51.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC----------cchHHHHHHHHHcCCcEE-e--C---hhhHHH-H
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR----------DDIDKLKSYLKSLGADYV-F--T---EEELRN-I  275 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~----------~~~~~~~~~~~~lg~~~v-~--~---~~d~~~-i  275 (405)
                      .|.+++|.||++|+|.++++.+...|++|+.+.++.          +..+...+.+...|...+ +  |   .++... +
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~   86 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALV   86 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHH
Confidence            578999999999999999999999999999887653          222223334444554322 2  2   223332 2


Q ss_pred             hhhcC-CCCCcEEEECC-C
Q psy2960         276 SRDAS-IPKPKLALNCV-G  292 (405)
Q Consensus       276 ~~~t~-g~g~Dvvld~~-g  292 (405)
                      .+... .+.+|+++++. |
T Consensus        87 ~~~~~~~g~iDilVnnA~g  105 (305)
T PRK08303         87 ERIDREQGRLDILVNDIWG  105 (305)
T ss_pred             HHHHHHcCCccEEEECCcc
Confidence            22211 24689999988 5

>PRK06196 oxidoreductase; Provisional

Probab=96.70  E-value=0.0063  Score=57.71  Aligned_cols=78  Identities=19%  Similarity=0.216  Sum_probs=50.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhh---HHH-Hhhhc-CCCCCcE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEE---LRN-ISRDA-SIPKPKL  286 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d---~~~-i~~~t-~g~g~Dv  286 (405)
                      .|.+|||.||+|++|.+++..+...|++|+.+.++.++.++..+.+..  ...+ .|-.|   ... +.+.. ...++|+
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~--v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~  102 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGIDG--VEVVMLDLADLESVRAFAERFLDSGRRIDI  102 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhh--CeEEEccCCCHHHHHHHHHHHHhcCCCCCE
Confidence            578999999999999999999888999999988765433222222211  2211 23222   222 22221 1357999


Q ss_pred             EEECCC
Q psy2960         287 ALNCVG  292 (405)
Q Consensus       287 vld~~g  292 (405)
                      +|++.|
T Consensus       103 li~nAg  108 (315)
T PRK06196        103 LINNAG  108 (315)
T ss_pred             EEECCC
Confidence            999987

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.69  E-value=0.0058  Score=51.88  Aligned_cols=93  Identities=19%  Similarity=0.338  Sum_probs=58.9

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCCchh
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNS  295 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~~~  295 (405)
                      +|.|+||+|-+|...++=|+..|-+|++++++.++...+ +-..-+. ..|++...   +.+.  -.|+|+||++.|...
T Consensus         2 KIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~-~~~~i~q-~Difd~~~---~a~~--l~g~DaVIsA~~~~~   74 (211)
T COG2910           2 KIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR-QGVTILQ-KDIFDLTS---LASD--LAGHDAVISAFGAGA   74 (211)
T ss_pred             eEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc-ccceeec-ccccChhh---hHhh--hcCCceEEEeccCCC
Confidence            689999999999999999999999999999887653221 0000000 11222221   2122  358999999987531


Q ss_pred             ----------HHHHHHhcccCC--EEEEEecc
Q psy2960         296 ----------ATNLLRTLVSKG--VMVTYGGM  315 (405)
Q Consensus       296 ----------~~~~~~~l~~~G--~~v~~g~~  315 (405)
                                .+..+..|+.-|  |++.+|+.
T Consensus        75 ~~~~~~~~k~~~~li~~l~~agv~RllVVGGA  106 (211)
T COG2910          75 SDNDELHSKSIEALIEALKGAGVPRLLVVGGA  106 (211)
T ss_pred             CChhHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence                      112345555533  88888854

>PRK06114 short chain dehydrogenase; Provisional

Probab=96.68  E-value=0.015  Score=53.06  Aligned_cols=81  Identities=22%  Similarity=0.303  Sum_probs=52.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcc-hHHHHHHHHHcCCcEE-e--Ch---hhHHH-Hhhhc-CCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYLKSLGADYV-F--TE---EELRN-ISRDA-SIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~-~~~~~~~~~~lg~~~v-~--~~---~d~~~-i~~~t-~g~g  283 (405)
                      .|.++||.|+++++|.++++.+...|++++++.++.+. .++..+.+...+.... +  |-   ++... +.+.. ..+.
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~   86 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAELGA   86 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999999999999988866432 2333344444453221 1  22   22222 22211 1346


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|++|++.|.
T Consensus        87 id~li~~ag~   96 (254)
T PRK06114         87 LTLAVNAAGI   96 (254)
T ss_pred             CCEEEECCCC
Confidence            8999999984

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=96.68  E-value=0.0055  Score=56.34  Aligned_cols=77  Identities=16%  Similarity=0.252  Sum_probs=49.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc-EE--eCh---hhHHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YV--FTE---EELRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~-~v--~~~---~d~~~-i~~~t-~g~g~  284 (405)
                      +|+++||.|+++++|.+.++.+...|++|+.+.++.++.+   +...+++.. .+  .|-   ++... +.+.. ..+.+
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   81 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLA---SLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKL   81 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence            5789999999999999999999999999988876644322   222233321 11  132   22222 22221 12468


Q ss_pred             cEEEECCC
Q psy2960         285 KLALNCVG  292 (405)
Q Consensus       285 Dvvld~~g  292 (405)
                      |+++++.|
T Consensus        82 d~li~~ag   89 (263)
T PRK06200         82 DCFVGNAG   89 (263)
T ss_pred             CEEEECCC
Confidence            99999987

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=96.68  E-value=0.0093  Score=54.21  Aligned_cols=84  Identities=12%  Similarity=0.216  Sum_probs=54.8

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE--Ee--C-----hhhHHH-Hhhhc
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY--VF--T-----EEELRN-ISRDA  279 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~--v~--~-----~~d~~~-i~~~t  279 (405)
                      ...++.+|+|.|++|++|...++.+...|++|+.+.++.+..+...+.+++.+...  ++  +     .++... +....
T Consensus         8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (247)
T PRK08945          8 DLLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE   87 (247)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence            34578999999999999999999888899999998877654444444454544321  22  2     222222 21111


Q ss_pred             -CCCCCcEEEECCCc
Q psy2960         280 -SIPKPKLALNCVGG  293 (405)
Q Consensus       280 -~g~g~Dvvld~~g~  293 (405)
                       ....+|++|.+.|.
T Consensus        88 ~~~~~id~vi~~Ag~  102 (247)
T PRK08945         88 EQFGRLDGVLHNAGL  102 (247)
T ss_pred             HHhCCCCEEEECCcc
Confidence             12468999998763

>PLN02780 ketoreductase/ oxidoreductase

Probab=96.68  E-value=0.0078  Score=57.24  Aligned_cols=80  Identities=18%  Similarity=0.236  Sum_probs=52.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH-cCCcEE----eChh----hH-HHHhhhcCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADYV----FTEE----EL-RNISRDASIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~-lg~~~v----~~~~----d~-~~i~~~t~g~  282 (405)
                      .|.+++|.||++|+|.+.+......|++++.+.++.++.++..+.+++ .+...+    .|-.    +. ..+.+..++.
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~~  131 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEGL  131 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcCC
Confidence            589999999999999999988888999999988776554433333332 221111    2221    21 2244444444


Q ss_pred             CCcEEEECCC
Q psy2960         283 KPKLALNCVG  292 (405)
Q Consensus       283 g~Dvvld~~g  292 (405)
                      .+|+++++.|
T Consensus       132 didilVnnAG  141 (320)
T PLN02780        132 DVGVLINNVG  141 (320)
T ss_pred             CccEEEEecC
Confidence            5779999887

>PRK06057 short chain dehydrogenase; Provisional

Probab=96.67  E-value=0.0055  Score=56.03  Aligned_cols=78  Identities=17%  Similarity=0.177  Sum_probs=50.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhh---HHH-Hhhhc-CCCCCcE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEE---LRN-ISRDA-SIPKPKL  286 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d---~~~-i~~~t-~g~g~Dv  286 (405)
                      .|++|+|.||+|++|.+.++.....|++++++.++.+..   .+...+++...+ .|..+   ... +.+.. ...++|+
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~---~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   82 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAG---KAAADEVGGLFVPTDVTDEDAVNALFDTAAETYGSVDI   82 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHH---HHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            588999999999999999999999999999887654321   122234443222 23322   222 22211 1246899


Q ss_pred             EEECCCc
Q psy2960         287 ALNCVGG  293 (405)
Q Consensus       287 vld~~g~  293 (405)
                      ++.+.|.
T Consensus        83 vi~~ag~   89 (255)
T PRK06057         83 AFNNAGI   89 (255)
T ss_pred             EEECCCc
Confidence            9998874

>PRK06484 short chain dehydrogenase; Validated

Probab=96.67  E-value=0.01  Score=60.37  Aligned_cols=101  Identities=18%  Similarity=0.232  Sum_probs=63.9

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChh---hHHH-Hhhhc-CCCC
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEE---ELRN-ISRDA-SIPK  283 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~---d~~~-i~~~t-~g~g  283 (405)
                      ..|+++||.|+++++|.+.++.+...|++|+.+.++.+..+   +...+++....   .|-.   +... +.+.. ..+.
T Consensus       267 ~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~  343 (520)
T PRK06484        267 ESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAK---KLAEALGDEHLSVQADITDEAAVESAFAQIQARWGR  343 (520)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            36889999999999999999999999999998876543322   22233444322   2322   2222 22221 1246


Q ss_pred             CcEEEECCCch----h-----------------------HHHHHHhcccCCEEEEEecc
Q psy2960         284 PKLALNCVGGN----S-----------------------ATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       284 ~Dvvld~~g~~----~-----------------------~~~~~~~l~~~G~~v~~g~~  315 (405)
                      +|++|++.|..    .                       ...++..++++|+++.++..
T Consensus       344 id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~  402 (520)
T PRK06484        344 LDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSI  402 (520)
T ss_pred             CCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECch
Confidence            89999988741    0                       11223445667999999864

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.66  E-value=0.018  Score=54.54  Aligned_cols=101  Identities=17%  Similarity=0.232  Sum_probs=66.8

Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC--cEEEEecCCcchHHHHHHHHHcCCcEEeC-hhhHHH-HhhhcCCC
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLGADYVFT-EEELRN-ISRDASIP  282 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~--~v~~~~~~~~~~~~~~~~~~~lg~~~v~~-~~d~~~-i~~~t~g~  282 (405)
                      +...+++|++||..|+ | .|..++.+++..+.  .|+++-.+++..+...+.++..|.+.+.. ..|... ...   ..
T Consensus        74 ~~L~i~~g~~VLDIG~-G-tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~---~~  148 (322)
T PRK13943         74 EWVGLDKGMRVLEIGG-G-TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE---FA  148 (322)
T ss_pred             HhcCCCCCCEEEEEeC-C-ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc---cC
Confidence            3467889999999998 4 69999999998874  46655444333333344455677664432 223322 222   24


Q ss_pred             CCcEEEECCCchhHH-HHHHhcccCCEEEEE
Q psy2960         283 KPKLALNCVGGNSAT-NLLRTLVSKGVMVTY  312 (405)
Q Consensus       283 g~Dvvld~~g~~~~~-~~~~~l~~~G~~v~~  312 (405)
                      .+|+|+.+.+..... ..++.|+++|+++..
T Consensus       149 ~fD~Ii~~~g~~~ip~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        149 PYDVIFVTVGVDEVPETWFTQLKEGGRVIVP  179 (322)
T ss_pred             CccEEEECCchHHhHHHHHHhcCCCCEEEEE
Confidence            699999988865554 467999999998774

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=96.65  E-value=0.0046  Score=58.81  Aligned_cols=80  Identities=15%  Similarity=0.091  Sum_probs=50.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc-EE--eChhh---HHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YV--FTEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~-~v--~~~~d---~~~-i~~~t-~g~g~  284 (405)
                      .+.+++|.|++|++|..+++.+...|++|+.+.++.++.+...+.+...+.. .+  .|-.+   ... +.+.. .+..+
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i   84 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKPL   84 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCCCc
Confidence            4789999999999999999988889999999887654433222222211211 11  23222   222 22221 13469


Q ss_pred             cEEEECCC
Q psy2960         285 KLALNCVG  292 (405)
Q Consensus       285 Dvvld~~g  292 (405)
                      |++|++.|
T Consensus        85 D~li~nAg   92 (322)
T PRK07453         85 DALVCNAA   92 (322)
T ss_pred             cEEEECCc
Confidence            99999987

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=96.64  E-value=0.014  Score=53.20  Aligned_cols=80  Identities=18%  Similarity=0.197  Sum_probs=52.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE-Ee--Chh---hHHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-VF--TEE---ELRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v~--~~~---d~~~-i~~~t-~g~g~  284 (405)
                      .+.+|||.|++|++|...++.....|++++.+.++.++.+......+..+... ++  |-.   +... +.... ...++
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   82 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGGV   82 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            46799999999999999999988899999999877655444334444444332 11  322   2222 22211 12468


Q ss_pred             cEEEECCC
Q psy2960         285 KLALNCVG  292 (405)
Q Consensus       285 Dvvld~~g  292 (405)
                      |++|.+.|
T Consensus        83 d~vi~~a~   90 (258)
T PRK12429         83 DILVNNAG   90 (258)
T ss_pred             CEEEECCC
Confidence            99999887

>PRK06125 short chain dehydrogenase; Provisional

Probab=96.62  E-value=0.012  Score=54.04  Aligned_cols=79  Identities=19%  Similarity=0.298  Sum_probs=51.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc-CCc-EE--eChhh---HHHHhhhcCCCCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GAD-YV--FTEEE---LRNISRDASIPKPK  285 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l-g~~-~v--~~~~d---~~~i~~~t~g~g~D  285 (405)
                      .|.+++|.|+++++|.+.++.+...|++|+.+.++.++.++..+.+.+. +.. .+  .|-.+   ...+.+.  -..+|
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~--~g~id   83 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAE--AGDID   83 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHH--hCCCC
Confidence            4789999999999999999999899999988887655433333333332 322 12  23222   2232222  24689


Q ss_pred             EEEECCCc
Q psy2960         286 LALNCVGG  293 (405)
Q Consensus       286 vvld~~g~  293 (405)
                      +++++.|.
T Consensus        84 ~lv~~ag~   91 (259)
T PRK06125         84 ILVNNAGA   91 (259)
T ss_pred             EEEECCCC
Confidence            99999874

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=96.62  E-value=0.03  Score=51.42  Aligned_cols=81  Identities=10%  Similarity=0.064  Sum_probs=48.9

Q ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHcCCcEEEEecCCcc--hHHHHHHHHHcCCc-EE--eChh---hHHH-Hhhhc-C
Q psy2960         213 PGDVVIQNGAN--SACGQNVIQIARHWGLKTINIVRNRDD--IDKLKSYLKSLGAD-YV--FTEE---ELRN-ISRDA-S  280 (405)
Q Consensus       213 ~g~~VLI~ga~--G~vG~~aiqla~~~G~~v~~~~~~~~~--~~~~~~~~~~lg~~-~v--~~~~---d~~~-i~~~t-~  280 (405)
                      .|++++|.|++  +++|.+.+..+...|++|+.+.++.+.  .++..+.+.+.+.. ..  .|-.   +... +.+.. .
T Consensus         5 ~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~   84 (258)
T PRK07370          5 TGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQK   84 (258)
T ss_pred             CCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHHH
Confidence            57899999985  799999999999999999877644321  22233333332221 12  2322   2222 22221 1


Q ss_pred             CCCCcEEEECCCc
Q psy2960         281 IPKPKLALNCVGG  293 (405)
Q Consensus       281 g~g~Dvvld~~g~  293 (405)
                      .+.+|+++++.|.
T Consensus        85 ~g~iD~lv~nag~   97 (258)
T PRK07370         85 WGKLDILVHCLAF   97 (258)
T ss_pred             cCCCCEEEEcccc
Confidence            2469999999873

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.62  E-value=0.016  Score=52.59  Aligned_cols=103  Identities=13%  Similarity=0.181  Sum_probs=63.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc-chHHHHHHHHHcCCcE-E--eChhh---HHH-Hhhhc-CCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD-DIDKLKSYLKSLGADY-V--FTEEE---LRN-ISRDA-SIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~-~~~~~~~~~~~lg~~~-v--~~~~d---~~~-i~~~t-~g~g  283 (405)
                      .+.+|||.|++|++|.+.+.-+...|++++..+++.. .........++.+... .  .|..+   ... +.+.. .-.+
T Consensus         5 ~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (252)
T PRK06077          5 KDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYGV   84 (252)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHcCC
Confidence            3689999999999999999988899999887775432 2222233444444432 1  23222   222 22211 1247


Q ss_pred             CcEEEECCCch----------h----------------HHHHHHhcccCCEEEEEecc
Q psy2960         284 PKLALNCVGGN----------S----------------ATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       284 ~Dvvld~~g~~----------~----------------~~~~~~~l~~~G~~v~~g~~  315 (405)
                      +|++|.+.|..          .                ...++..+++.|+++.++..
T Consensus        85 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~  142 (252)
T PRK06077         85 ADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASV  142 (252)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcch
Confidence            89999999730          0                11234455678999999864

>PRK09242 tropinone reductase; Provisional

Probab=96.62  E-value=0.014  Score=53.41  Aligned_cols=81  Identities=16%  Similarity=0.230  Sum_probs=52.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc--CCcEE---eCh---hhHHH-Hhhhc-CCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL--GADYV---FTE---EELRN-ISRDA-SIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l--g~~~v---~~~---~d~~~-i~~~t-~g~  282 (405)
                      .|+++||.|++|++|...+..+...|++++.+.++.+..++..+.+...  +.+..   .|-   ++... +.+.. ..+
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   87 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD   87 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999999999999999998887655443333333333  22211   132   22222 22211 134


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      ++|+++.+.|.
T Consensus        88 ~id~li~~ag~   98 (257)
T PRK09242         88 GLHILVNNAGG   98 (257)
T ss_pred             CCCEEEECCCC
Confidence            68999999984

>PRK07825 short chain dehydrogenase; Provisional

Probab=96.61  E-value=0.0098  Score=54.98  Aligned_cols=78  Identities=14%  Similarity=0.092  Sum_probs=50.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcC-CcEE-eC---hhhHHH-HhhhcC-CCCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG-ADYV-FT---EEELRN-ISRDAS-IPKPK  285 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg-~~~v-~~---~~d~~~-i~~~t~-g~g~D  285 (405)
                      .|.++||+||+|++|...++.+...|++++.+.++.+..   .+....++ ...+ .|   .+++.. +.+... ..++|
T Consensus         4 ~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~---~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (273)
T PRK07825          4 RGKVVAITGGARGIGLATARALAALGARVAIGDLDEALA---KETAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPID   80 (273)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHH---HHHHHHhccceEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            367999999999999999998888999988887654332   22333444 2221 23   223333 222211 24689


Q ss_pred             EEEECCCc
Q psy2960         286 LALNCVGG  293 (405)
Q Consensus       286 vvld~~g~  293 (405)
                      +++++.|.
T Consensus        81 ~li~~ag~   88 (273)
T PRK07825         81 VLVNNAGV   88 (273)
T ss_pred             EEEECCCc
Confidence            99999873

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.61  E-value=0.028  Score=50.75  Aligned_cols=81  Identities=14%  Similarity=0.245  Sum_probs=50.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcc-hHHHHHHHHHcCCcEE-e--Chhh---HHH-HhhhcC-CCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYLKSLGADYV-F--TEEE---LRN-ISRDAS-IPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~-~~~~~~~~~~lg~~~v-~--~~~d---~~~-i~~~t~-g~g  283 (405)
                      .+.++||.|++|++|...+..+...|++|+++.++.++ .+...+.++..+.... +  |-.+   ... +.+... ..+
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEFGG   83 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            45799999999999999999999999999888765442 1222233333343322 2  3222   222 222111 246


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|+|+.+.|.
T Consensus        84 id~vi~~ag~   93 (248)
T PRK05557         84 VDILVNNAGI   93 (248)
T ss_pred             CCEEEECCCc
Confidence            8999999874

>PRK06940 short chain dehydrogenase; Provisional

Probab=96.59  E-value=0.031  Score=51.85  Aligned_cols=78  Identities=17%  Similarity=0.210  Sum_probs=48.6

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE-Ee--Chh---hHHH-HhhhcCCCCCcE
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-VF--TEE---ELRN-ISRDASIPKPKL  286 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v~--~~~---d~~~-i~~~t~g~g~Dv  286 (405)
                      +++++|.|+ |++|.+++..+. .|++|+.+.++.+..++..+.++..|.+. ++  |-.   +... +.+.....++|+
T Consensus         2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~   79 (275)
T PRK06940          2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVTG   79 (275)
T ss_pred             CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence            357899998 799999998875 79999998876544333334444444322 12  322   2333 332212346999


Q ss_pred             EEECCCc
Q psy2960         287 ALNCVGG  293 (405)
Q Consensus       287 vld~~g~  293 (405)
                      ++++.|.
T Consensus        80 li~nAG~   86 (275)
T PRK06940         80 LVHTAGV   86 (275)
T ss_pred             EEECCCc
Confidence            9999984

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.59  E-value=0.014  Score=52.80  Aligned_cols=81  Identities=15%  Similarity=0.249  Sum_probs=52.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Chhh---HHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~d---~~~-i~~~t-~g~g~  284 (405)
                      .+.+++|.|++|++|...+..+...|++|+.+.++.++.++..+.....+....+   |..+   ... +.+.. ..+++
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   85 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGSI   85 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCCc
Confidence            3678999999999999999988899999999887655433333344444432221   2222   222 22211 13478


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |++|.+.|.
T Consensus        86 d~vi~~ag~   94 (239)
T PRK07666         86 DILINNAGI   94 (239)
T ss_pred             cEEEEcCcc
Confidence            999998874

>PRK07774 short chain dehydrogenase; Provisional

Probab=96.58  E-value=0.014  Score=52.98  Aligned_cols=81  Identities=12%  Similarity=0.121  Sum_probs=51.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE-E--eChhh---HHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-V--FTEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v--~~~~d---~~~-i~~~t-~g~g~  284 (405)
                      .+.+++|.|++|++|...++.+...|++++.+.++.+..+...+..++.+... .  .|..+   ... +.+.. ...++
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   84 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGGI   84 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence            57899999999999999999998899999998876543323233333333221 1  23222   222 11111 12468


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+||.+.|.
T Consensus        85 d~vi~~ag~   93 (250)
T PRK07774         85 DYLVNNAAI   93 (250)
T ss_pred             CEEEECCCC
Confidence            999999983

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.58  E-value=0.01  Score=51.33  Aligned_cols=87  Identities=15%  Similarity=0.206  Sum_probs=60.2

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH-HhhhcCCCCCcEEEEC
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNC  290 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~Dvvld~  290 (405)
                      -.|.+|.|.|. |.+|+..++.++.+|++|++..++...    .......+..    ..++++ +.+      .|+|+.+
T Consensus        34 l~g~tvgIiG~-G~IG~~vA~~l~~fG~~V~~~d~~~~~----~~~~~~~~~~----~~~l~ell~~------aDiv~~~   98 (178)
T PF02826_consen   34 LRGKTVGIIGY-GRIGRAVARRLKAFGMRVIGYDRSPKP----EEGADEFGVE----YVSLDELLAQ------ADIVSLH   98 (178)
T ss_dssp             STTSEEEEEST-SHHHHHHHHHHHHTT-EEEEEESSCHH----HHHHHHTTEE----ESSHHHHHHH-------SEEEE-
T ss_pred             cCCCEEEEEEE-cCCcCeEeeeeecCCceeEEecccCCh----hhhcccccce----eeehhhhcch------hhhhhhh
Confidence            36899999999 999999999999999999999866532    1223444442    223444 332      5999998


Q ss_pred             CCc-h----hH-HHHHHhcccCCEEEEEe
Q psy2960         291 VGG-N----SA-TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       291 ~g~-~----~~-~~~~~~l~~~G~~v~~g  313 (405)
                      +.. +    .+ .+.+..|+++..||.++
T Consensus        99 ~plt~~T~~li~~~~l~~mk~ga~lvN~a  127 (178)
T PF02826_consen   99 LPLTPETRGLINAEFLAKMKPGAVLVNVA  127 (178)
T ss_dssp             SSSSTTTTTSBSHHHHHTSTTTEEEEESS
T ss_pred             hccccccceeeeeeeeeccccceEEEecc
Confidence            863 2    22 34689999999888876

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK06138 short chain dehydrogenase; Provisional

Probab=96.58  E-value=0.013  Score=53.26  Aligned_cols=80  Identities=16%  Similarity=0.222  Sum_probs=51.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE-Ee--Chhh---HHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-VF--TEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v~--~~~d---~~~-i~~~t-~g~g~  284 (405)
                      .|.+++|.||+|++|...++.+...|++++.+.++.+..+...+..+ .+... ++  |-.|   ..+ +.+.. ..+++
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i   82 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQGDVGSAEAVEALVDFVAARWGRL   82 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            46799999999999999999888889999999877554333333332 23321 11  3222   222 22111 12478


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++.+.|.
T Consensus        83 d~vi~~ag~   91 (252)
T PRK06138         83 DVLVNNAGF   91 (252)
T ss_pred             CEEEECCCC
Confidence            999999984

>PRK06720 hypothetical protein; Provisional

Probab=96.58  E-value=0.021  Score=48.89  Aligned_cols=80  Identities=19%  Similarity=0.278  Sum_probs=49.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-e--Chhh---HHH-Hhhh-cCCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-F--TEEE---LRN-ISRD-ASIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~--~~~d---~~~-i~~~-t~g~g~  284 (405)
                      .|.+++|.|+++++|.+.+......|++++.+.++.+..+...+.+.+.+.... +  |..+   +.. +.+. ...+++
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~i   94 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFSRI   94 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            578999999999999999998888999988887554332222233334443321 2  3222   222 2111 113468


Q ss_pred             cEEEECCC
Q psy2960         285 KLALNCVG  292 (405)
Q Consensus       285 Dvvld~~g  292 (405)
                      |+++++.|
T Consensus        95 DilVnnAG  102 (169)
T PRK06720         95 DMLFQNAG  102 (169)
T ss_pred             CEEEECCC
Confidence            99999877

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.57  E-value=0.013  Score=53.28  Aligned_cols=81  Identities=12%  Similarity=0.229  Sum_probs=51.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEE-ecCCcchHHHHHHHHHcCCcEE---eChhh---HHH-Hhhhc-CCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINI-VRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDA-SIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~-~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t-~g~g  283 (405)
                      +|.++||.|++|++|...+..+...|++|+.. .++.++.++..+..+..+....   .|-.+   ... +.+.. ...+
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFGR   82 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            46899999999999999999999999998775 3443333333344445554322   23222   222 22221 1246


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|++|++.|.
T Consensus        83 id~vi~~ag~   92 (250)
T PRK08063         83 LDVFVNNAAS   92 (250)
T ss_pred             CCEEEECCCC
Confidence            8999998873

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=96.57  E-value=0.022  Score=55.73  Aligned_cols=106  Identities=16%  Similarity=0.194  Sum_probs=63.1

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHH---HHHHHHHc-CCcEE-eChhhHHHHhhhcC--CC
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDK---LKSYLKSL-GADYV-FTEEELRNISRDAS--IP  282 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~---~~~~~~~l-g~~~v-~~~~d~~~i~~~t~--g~  282 (405)
                      +-..+.+|||.||+|.+|..++..+...|.+|++++++.++.+.   ..+..... +...+ .|..|.+.+.+...  +.
T Consensus        56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~  135 (390)
T PLN02657         56 KEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGD  135 (390)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCC
Confidence            44568899999999999999999998899999999876532110   01111112 33323 24333222222211  22


Q ss_pred             CCcEEEECCCchh-------------HHHHHHhcccC--CEEEEEecc
Q psy2960         283 KPKLALNCVGGNS-------------ATNLLRTLVSK--GVMVTYGGM  315 (405)
Q Consensus       283 g~Dvvld~~g~~~-------------~~~~~~~l~~~--G~~v~~g~~  315 (405)
                      ++|+|++|++...             ....++.+...  ++|+.++..
T Consensus       136 ~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~  183 (390)
T PLN02657        136 PVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAI  183 (390)
T ss_pred             CCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEEeec
Confidence            6999999987421             12234444433  478888754

>PRK08017 oxidoreductase; Provisional

Probab=96.57  E-value=0.012  Score=53.78  Aligned_cols=74  Identities=18%  Similarity=0.223  Sum_probs=50.4

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe-Chhh---HHH----HhhhcCCCCCcE
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEE---LRN----ISRDASIPKPKL  286 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~-~~~d---~~~----i~~~t~g~g~Dv  286 (405)
                      ++|||.|++|++|.+.++.+...|++++++.++.++    .+.+++.+.+.+. |..+   ...    +.+.+ +..+|.
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~----~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~-~~~~~~   77 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDD----VARMNSLGFTGILLDLDDPESVERAADEVIALT-DNRLYG   77 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH----hHHHHhCCCeEEEeecCCHHHHHHHHHHHHHhc-CCCCeE
Confidence            579999999999999999999999999888765432    4445556665442 3222   222    22222 346899


Q ss_pred             EEECCCc
Q psy2960         287 ALNCVGG  293 (405)
Q Consensus       287 vld~~g~  293 (405)
                      ++.+.|.
T Consensus        78 ii~~ag~   84 (256)
T PRK08017         78 LFNNAGF   84 (256)
T ss_pred             EEECCCC
Confidence            9988763

>PRK08703 short chain dehydrogenase; Provisional

Probab=96.56  E-value=0.01  Score=53.56  Aligned_cols=80  Identities=19%  Similarity=0.307  Sum_probs=52.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE----EeCh-----hhHHH----Hhhhc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY----VFTE-----EELRN----ISRDA  279 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~----v~~~-----~d~~~----i~~~t  279 (405)
                      +|.+|+|.|++|++|...++.+...|++|+++.++.+..+...+.+.+.+...    -.|.     +++..    +.+..
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~~   84 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEAT   84 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHHh
Confidence            46899999999999999999999999999998877654443334443333211    1221     12222    32222


Q ss_pred             CCCCCcEEEECCCc
Q psy2960         280 SIPKPKLALNCVGG  293 (405)
Q Consensus       280 ~g~g~Dvvld~~g~  293 (405)
                       +..+|++|++.|.
T Consensus        85 -~~~id~vi~~ag~   97 (239)
T PRK08703         85 -QGKLDGIVHCAGY   97 (239)
T ss_pred             -CCCCCEEEEeccc
Confidence             2468999999984

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=96.55  E-value=0.014  Score=53.44  Aligned_cols=81  Identities=19%  Similarity=0.255  Sum_probs=52.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH-Hhhh-cCCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRD-ASIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~-t~g~g~  284 (405)
                      .+.+|||.|++|++|...+..+...|++++.+.++.+..+...+..+..+.+..   .|-.+   ..+ +... ....++
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~~   89 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLGKV   89 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            479999999999999999998889999999887665443333333344443321   23222   222 2221 113468


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        90 d~li~~ag~   98 (255)
T PRK06113         90 DILVNNAGG   98 (255)
T ss_pred             CEEEECCCC
Confidence            999999873

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=96.54  E-value=0.017  Score=52.47  Aligned_cols=80  Identities=15%  Similarity=0.250  Sum_probs=52.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE-Ee--Chhh---HHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-VF--TEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v~--~~~d---~~~-i~~~t-~g~g~  284 (405)
                      ++.++||.||+|++|...++.+...|++|+.+.++.+...+..+..++.+... ++  |..+   ... +.+.. ...++
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~   81 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGPV   81 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            47899999999999999999999999999988876554333334344444322 22  2222   222 22211 12468


Q ss_pred             cEEEECCC
Q psy2960         285 KLALNCVG  292 (405)
Q Consensus       285 Dvvld~~g  292 (405)
                      |++|.+.|
T Consensus        82 d~vi~~ag   89 (250)
T TIGR03206        82 DVLVNNAG   89 (250)
T ss_pred             CEEEECCC
Confidence            99999997

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=96.54  E-value=0.034  Score=53.52  Aligned_cols=79  Identities=13%  Similarity=0.118  Sum_probs=50.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC--cEE-eChhhHHHHhhhcCCCCCcEEEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA--DYV-FTEEELRNISRDASIPKPKLALN  289 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~--~~v-~~~~d~~~i~~~t~g~g~Dvvld  289 (405)
                      .|.+|||.||+|.+|..+++.+...|.+|+++.++.+......+.. ..+.  ..+ .|-.+.+.+.+.....++|+||.
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih   81 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELL-NLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFH   81 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHH-hhcCCceEEEccCCCHHHHHHHHhhcCCCEEEE
Confidence            4789999999999999999999999999998876654322221212 1121  111 23333222333322336899999


Q ss_pred             CCC
Q psy2960         290 CVG  292 (405)
Q Consensus       290 ~~g  292 (405)
                      +.+
T Consensus        82 ~A~   84 (349)
T TIGR02622        82 LAA   84 (349)
T ss_pred             CCc
Confidence            987

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.54  E-value=0.013  Score=52.92  Aligned_cols=80  Identities=21%  Similarity=0.294  Sum_probs=49.3

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEE-ecCCcchHHHHHHHHHcCCcEEe---Chhh---HHH-Hhhhc-CCCCC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINI-VRNRDDIDKLKSYLKSLGADYVF---TEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~-~~~~~~~~~~~~~~~~lg~~~v~---~~~d---~~~-i~~~t-~g~g~  284 (405)
                      +.++||.|++|++|...+..+...|++++.+ .++.+..+...+.+...+....+   |..+   ... +.+.. ...++
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKFGKI   84 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            5789999999999999998888889999888 65544333333333333322211   3222   222 21110 12368


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+||.+.|.
T Consensus        85 d~vi~~ag~   93 (247)
T PRK05565         85 DILVNNAGI   93 (247)
T ss_pred             CEEEECCCc
Confidence            999998874

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=96.52  E-value=0.019  Score=52.48  Aligned_cols=81  Identities=19%  Similarity=0.272  Sum_probs=53.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE-E--eCh---hhHHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-V--FTE---EELRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v--~~~---~d~~~-i~~~t-~g~g~  284 (405)
                      .|.+++|.|++|++|...+..+...|++++.+.++.+..+...+.+++.|... .  .|-   ++... +.+.. ..+.+
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   89 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGRL   89 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence            58999999999999999999888899999998876544333344444445321 1  132   22222 22211 12468


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++.+.|.
T Consensus        90 d~vi~~ag~   98 (256)
T PRK06124         90 DILVNNVGA   98 (256)
T ss_pred             CEEEECCCC
Confidence            999999884

>PRK08263 short chain dehydrogenase; Provisional

Probab=96.51  E-value=0.016  Score=53.60  Aligned_cols=77  Identities=13%  Similarity=0.201  Sum_probs=48.1

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE-Ee--Ch---hhHHH-Hhhhc-CCCCCc
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-VF--TE---EELRN-ISRDA-SIPKPK  285 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v~--~~---~d~~~-i~~~t-~g~g~D  285 (405)
                      +.+|||.|++|++|..+++.+...|++|+.+.++.+..   .+....++... ++  |.   ++... +.+.. .-.++|
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   79 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALERGDRVVATARDTATL---ADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRLD   79 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHH---HHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            46899999999999999998888899998888664332   12222233221 11  22   22222 22211 124689


Q ss_pred             EEEECCCc
Q psy2960         286 LALNCVGG  293 (405)
Q Consensus       286 vvld~~g~  293 (405)
                      +++.|.|.
T Consensus        80 ~vi~~ag~   87 (275)
T PRK08263         80 IVVNNAGY   87 (275)
T ss_pred             EEEECCCC
Confidence            99999874

>PRK07775 short chain dehydrogenase; Provisional

Probab=96.51  E-value=0.014  Score=54.03  Aligned_cols=81  Identities=12%  Similarity=0.190  Sum_probs=51.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Chhh---HHH-Hhhh-cCCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEEE---LRN-ISRD-ASIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~d---~~~-i~~~-t~g~g~  284 (405)
                      +..+++|.||+|++|.+.++.+...|++|+++.++.+..+...+..+..+....+   |..+   ... +.+. ....++
T Consensus         9 ~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   88 (274)
T PRK07775          9 DRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALGEI   88 (274)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            4568999999999999999988889999988886644333223333444543221   3222   222 2221 112468


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |++|.+.|.
T Consensus        89 d~vi~~Ag~   97 (274)
T PRK07775         89 EVLVSGAGD   97 (274)
T ss_pred             CEEEECCCc
Confidence            999999874

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=96.50  E-value=0.019  Score=52.50  Aligned_cols=79  Identities=16%  Similarity=0.265  Sum_probs=51.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eCh---hhHHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTE---EELRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~---~d~~~-i~~~t-~g~g~  284 (405)
                      .|+++||.||++++|.+.++.+...|++|+.+.++.  .+...+...+.+.+..   .|-   ++... +.+.. ..+++
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~--~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i   84 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE--APETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMGHI   84 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch--HHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence            578999999999999999999999999998876442  1223344445554322   232   22333 22211 12468


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        85 D~lv~~ag~   93 (251)
T PRK12481         85 DILINNAGI   93 (251)
T ss_pred             CEEEECCCc
Confidence            999999873

>PRK06484 short chain dehydrogenase; Validated

Probab=96.49  E-value=0.016  Score=59.05  Aligned_cols=78  Identities=21%  Similarity=0.248  Sum_probs=52.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChh---hHHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEE---ELRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~---d~~~-i~~~t-~g~g~  284 (405)
                      +|+++||+|+++++|.+.++.+...|++|+.+.++.+..   .+...+++....   .|..   +... +.+.. ..+++
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   80 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERA---RERADSLGPDHHALAMDVSDEAQIREGFEQLHREFGRI   80 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence            578999999999999999999999999999887654332   233445554321   2322   2222 22221 12468


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        81 D~li~nag~   89 (520)
T PRK06484         81 DVLVNNAGV   89 (520)
T ss_pred             CEEEECCCc
Confidence            999999874

>PRK07024 short chain dehydrogenase; Provisional

Probab=96.49  E-value=0.013  Score=53.72  Aligned_cols=36  Identities=25%  Similarity=0.192  Sum_probs=31.4

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD  249 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~  249 (405)
                      +.+|||.|++|++|.+.+..+...|++++.+.++.+
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~   37 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTD   37 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            468999999999999999999889999988876543

>PRK08177 short chain dehydrogenase; Provisional

Probab=96.49  E-value=0.019  Score=51.39  Aligned_cols=75  Identities=15%  Similarity=0.154  Sum_probs=49.2

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE--eChhh---HHHHhhhcCCCCCcEEEE
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV--FTEEE---LRNISRDASIPKPKLALN  289 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v--~~~~d---~~~i~~~t~g~g~Dvvld  289 (405)
                      .+|+|.|++|++|.+.+..+...|++|+++.++.+..+    .+.+++...+  .|-.|   ...+.+.....++|+++.
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~----~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~   77 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDT----ALQALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFV   77 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchH----HHHhccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEE
Confidence            47999999999999999888889999999887765422    2223322222  23222   333333333457999999


Q ss_pred             CCCc
Q psy2960         290 CVGG  293 (405)
Q Consensus       290 ~~g~  293 (405)
                      +.|.
T Consensus        78 ~ag~   81 (225)
T PRK08177         78 NAGI   81 (225)
T ss_pred             cCcc
Confidence            8763

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.49  E-value=0.014  Score=53.69  Aligned_cols=80  Identities=13%  Similarity=0.216  Sum_probs=49.5

Q ss_pred             CCCEEEEeCC--CcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHH-HHcCCcEEe--C---hhhHHH-HhhhcC-CC
Q psy2960         213 PGDVVIQNGA--NSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVF--T---EEELRN-ISRDAS-IP  282 (405)
Q Consensus       213 ~g~~VLI~ga--~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~-~~lg~~~v~--~---~~d~~~-i~~~t~-g~  282 (405)
                      .|.++||.||  ++|+|.+.++.+...|++|+.+.+. +..++..+.+ .++|....+  |   .++... +.+... ..
T Consensus         5 ~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   83 (261)
T PRK08690          5 QGKKILITGMISERSIAYGIAKACREQGAELAFTYVV-DKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWD   83 (261)
T ss_pred             CCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCc-HHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHhC
Confidence            5789999996  5799999999999999999887543 2222333333 333432222  3   223333 222211 24


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      ++|+++++.|.
T Consensus        84 ~iD~lVnnAG~   94 (261)
T PRK08690         84 GLDGLVHSIGF   94 (261)
T ss_pred             CCcEEEECCcc
Confidence            69999999874

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.48  E-value=0.016  Score=53.20  Aligned_cols=79  Identities=14%  Similarity=0.226  Sum_probs=49.3

Q ss_pred             CCCEEEEeCCCc--HHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHH-HHcCCcEE--eCh---hhHHH-HhhhcC-CC
Q psy2960         213 PGDVVIQNGANS--ACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYV--FTE---EELRN-ISRDAS-IP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G--~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~-~~lg~~~v--~~~---~d~~~-i~~~t~-g~  282 (405)
                      .|++++|.|+++  |+|.+.++.+...|++|+.+.++ +..++..+.+ .+.|....  .|-   ++... +.+... .+
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~-~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g   85 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQS-EVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWG   85 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCc-hHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcC
Confidence            578999999986  89999998888899998887654 2222223322 33454332  232   22333 322211 24


Q ss_pred             CCcEEEECCC
Q psy2960         283 KPKLALNCVG  292 (405)
Q Consensus       283 g~Dvvld~~g  292 (405)
                      .+|+++++.|
T Consensus        86 ~iDilVnnag   95 (260)
T PRK06603         86 SFDFLLHGMA   95 (260)
T ss_pred             CccEEEEccc
Confidence            6999999887

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=96.48  E-value=0.0078  Score=55.29  Aligned_cols=77  Identities=14%  Similarity=0.194  Sum_probs=48.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE-E--eChhh---HHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-V--FTEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v--~~~~d---~~~-i~~~t-~g~g~  284 (405)
                      ++++++|.||+|++|.++++.+...|++|+.+.++.+..+   +.....+.+. .  .|-.+   ... +.+.. ..+.+
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~---~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   80 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQ---ELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGKI   80 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence            5789999999999999999999999999998876543221   1222233221 1  13222   222 22221 12468


Q ss_pred             cEEEECCC
Q psy2960         285 KLALNCVG  292 (405)
Q Consensus       285 Dvvld~~g  292 (405)
                      |+++++.|
T Consensus        81 d~li~~Ag   88 (262)
T TIGR03325        81 DCLIPNAG   88 (262)
T ss_pred             CEEEECCC
Confidence            99999986

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=96.46  E-value=0.023  Score=51.74  Aligned_cols=75  Identities=16%  Similarity=0.266  Sum_probs=47.8

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH-Hhhhc-CCCCCcEE
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDA-SIPKPKLA  287 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t-~g~g~Dvv  287 (405)
                      +|+|.|++|++|.+.+..+...|++|+.+.++.++.+   +....++.+..   .|-.+   ... +.+.. ..+++|++
T Consensus         2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~v   78 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQ---ELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVL   78 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHH---HHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            6899999999999999999999999998887644322   22223343221   23222   222 22221 12468999


Q ss_pred             EECCCc
Q psy2960         288 LNCVGG  293 (405)
Q Consensus       288 ld~~g~  293 (405)
                      +.+.|.
T Consensus        79 i~~ag~   84 (248)
T PRK10538         79 VNNAGL   84 (248)
T ss_pred             EECCCc
Confidence            998874

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.46  E-value=0.019  Score=53.23  Aligned_cols=81  Identities=15%  Similarity=0.131  Sum_probs=50.9

Q ss_pred             CCCCCEEEEeCCC--cHHHHHHHHHHHHcCCcEEEEecCCcchHHHHH-HHHHcCCcEEe--Ch---hhHHH-Hhhhc-C
Q psy2960         211 LSPGDVVIQNGAN--SACGQNVIQIARHWGLKTINIVRNRDDIDKLKS-YLKSLGADYVF--TE---EELRN-ISRDA-S  280 (405)
Q Consensus       211 ~~~g~~VLI~ga~--G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~-~~~~lg~~~v~--~~---~d~~~-i~~~t-~  280 (405)
                      .-.|+++||.|++  +|+|.+.++.+...|++|+.+.++ +...++++ ...++|....+  |-   ++... +.+.. .
T Consensus         7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~-~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   85 (272)
T PRK08159          7 LMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQG-DALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKK   85 (272)
T ss_pred             cccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCc-hHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHh
Confidence            3467899999996  799999999999999998877544 22222333 33445532222  32   22333 32221 1


Q ss_pred             CCCCcEEEECCC
Q psy2960         281 IPKPKLALNCVG  292 (405)
Q Consensus       281 g~g~Dvvld~~g  292 (405)
                      .+.+|+++++.|
T Consensus        86 ~g~iD~lv~nAG   97 (272)
T PRK08159         86 WGKLDFVVHAIG   97 (272)
T ss_pred             cCCCcEEEECCc
Confidence            346899999987

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=96.44  E-value=0.0076  Score=54.69  Aligned_cols=81  Identities=15%  Similarity=0.200  Sum_probs=52.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE-Ee--Chhh---HHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-VF--TEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v~--~~~d---~~~-i~~~t-~g~g~  284 (405)
                      .+.+|||.||+|++|...+..+...|++|+++.++.++.....+.+.+.+.+. ++  |-.+   ... +.+.. ....+
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   84 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGRL   84 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            46799999999999999999888899999999877554344444444444322 11  2222   222 22211 12468


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+|+.+.|.
T Consensus        85 d~vi~~ag~   93 (251)
T PRK12826         85 DILVANAGI   93 (251)
T ss_pred             CEEEECCCC
Confidence            999999864

>PRK06197 short chain dehydrogenase; Provisional

Probab=96.44  E-value=0.018  Score=54.23  Aligned_cols=80  Identities=24%  Similarity=0.322  Sum_probs=50.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH-c-CCcE-E--eChhh---HHH-Hhhhc-CCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-L-GADY-V--FTEEE---LRN-ISRDA-SIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~-l-g~~~-v--~~~~d---~~~-i~~~t-~g~  282 (405)
                      .|.+|+|.||+|++|.++++.+...|++++.+.++.++.++..+.+.+ . +... +  .|-.+   ... +.+.. ...
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~   94 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAYP   94 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhCC
Confidence            578999999999999999998888899998888765443322222222 1 1211 1  23323   222 22221 124


Q ss_pred             CCcEEEECCC
Q psy2960         283 KPKLALNCVG  292 (405)
Q Consensus       283 g~Dvvld~~g  292 (405)
                      ++|++|++.|
T Consensus        95 ~iD~li~nAg  104 (306)
T PRK06197         95 RIDLLINNAG  104 (306)
T ss_pred             CCCEEEECCc
Confidence            6899999987

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.44  E-value=0.046  Score=47.84  Aligned_cols=81  Identities=11%  Similarity=0.165  Sum_probs=50.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHH-HcCCcEE-eChhhHHHHhhhcCCCCCcEEEEC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGADYV-FTEEELRNISRDASIPKPKLALNC  290 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~-~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld~  290 (405)
                      .+.+++|.|++|++|.+++..+...|++++.+.++.++.+...+.+. ..+.... .+..+.+++.+..  .+.|+||.+
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~diVi~a  104 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAI--KGADVVFAA  104 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHH--hcCCEEEEC
Confidence            67899999999999999998888889988888765443222222222 1233221 2222222222221  367999998


Q ss_pred             CCchh
Q psy2960         291 VGGNS  295 (405)
Q Consensus       291 ~g~~~  295 (405)
                      ++...
T Consensus       105 t~~g~  109 (194)
T cd01078         105 GAAGV  109 (194)
T ss_pred             CCCCc
Confidence            87654

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>CHL00194 ycf39 Ycf39; Provisional

Probab=96.44  E-value=0.023  Score=53.91  Aligned_cols=94  Identities=16%  Similarity=0.247  Sum_probs=60.8

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe-ChhhHHHHhhhcCCCCCcEEEECCCch
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVGGN  294 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~-~~~d~~~i~~~t~g~g~Dvvld~~g~~  294 (405)
                      +|||.||+|-+|...++.+...|.+|.+++++.++    .......+.+.+. |..|...+.+..  .++|+|+++++..
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~----~~~l~~~~v~~v~~Dl~d~~~l~~al--~g~d~Vi~~~~~~   75 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRK----ASFLKEWGAELVYGDLSLPETLPPSF--KGVTAIIDASTSR   75 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHH----hhhHhhcCCEEEECCCCCHHHHHHHH--CCCCEEEECCCCC
Confidence            69999999999999999999999999999876432    2233344655442 333433333332  3689999987631


Q ss_pred             h-------------HHHHHHhcccCC--EEEEEecc
Q psy2960         295 S-------------ATNLLRTLVSKG--VMVTYGGM  315 (405)
Q Consensus       295 ~-------------~~~~~~~l~~~G--~~v~~g~~  315 (405)
                      .             ....++.++..|  +|+.++..
T Consensus        76 ~~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~  111 (317)
T CHL00194         76 PSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSIL  111 (317)
T ss_pred             CCCccchhhhhHHHHHHHHHHHHHcCCCEEEEeccc
Confidence            1             122345554444  88888753

>PRK05875 short chain dehydrogenase; Provisional

Probab=96.43  E-value=0.016  Score=53.61  Aligned_cols=80  Identities=14%  Similarity=0.181  Sum_probs=51.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcC--Cc-EEe--Ch---hhHHH-Hhhhc-CCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG--AD-YVF--TE---EELRN-ISRDA-SIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg--~~-~v~--~~---~d~~~-i~~~t-~g~  282 (405)
                      ++.++||.|++|++|..+++.+...|++|+.+.++.++.+...+.....+  .. .++  |-   ++... +.+.. ...
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   85 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWHG   85 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            47899999999999999999999999999988876544333333333322  11 122  32   22222 22221 134


Q ss_pred             CCcEEEECCC
Q psy2960         283 KPKLALNCVG  292 (405)
Q Consensus       283 g~Dvvld~~g  292 (405)
                      ++|++|.+.|
T Consensus        86 ~~d~li~~ag   95 (276)
T PRK05875         86 RLHGVVHCAG   95 (276)
T ss_pred             CCCEEEECCC
Confidence            6899999987

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.43  E-value=0.027  Score=48.00  Aligned_cols=95  Identities=16%  Similarity=0.186  Sum_probs=63.4

Q ss_pred             hccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcH-HHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeCh
Q psy2960         191 ISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSA-CGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE  269 (405)
Q Consensus       191 Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~-vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~  269 (405)
                      ....|+...++...+.....--.|.+|||.|+ |. +|..++..++..|++++++.++.                     
T Consensus        21 ~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~-G~~~G~~~a~~L~~~g~~V~v~~r~~---------------------   78 (168)
T cd01080          21 PGFIPCTPAGILELLKRYGIDLAGKKVVVVGR-SNIVGKPLAALLLNRNATVTVCHSKT---------------------   78 (168)
T ss_pred             CCccCChHHHHHHHHHHcCCCCCCCEEEEECC-cHHHHHHHHHHHhhCCCEEEEEECCc---------------------
Confidence            45566666666666655444458999999999 65 69999999999999866665331                     


Q ss_pred             hhHHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEec
Q psy2960         270 EELRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       270 ~d~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~  314 (405)
                      ++..+ +      ..+|+||.+++.+.+ -.-+.++++-.++.++.
T Consensus        79 ~~l~~~l------~~aDiVIsat~~~~i-i~~~~~~~~~viIDla~  117 (168)
T cd01080          79 KNLKEHT------KQADIVIVAVGKPGL-VKGDMVKPGAVVIDVGI  117 (168)
T ss_pred             hhHHHHH------hhCCEEEEcCCCCce-ecHHHccCCeEEEEccC
Confidence            11122 2      246999999998663 22245666666777763

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK12743 oxidoreductase; Provisional

Probab=96.41  E-value=0.023  Score=51.94  Aligned_cols=78  Identities=12%  Similarity=0.173  Sum_probs=50.9

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcc-hHHHHHHHHHcCCcEE---eChhh---HHH----HhhhcCCC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYLKSLGADYV---FTEEE---LRN----ISRDASIP  282 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~-~~~~~~~~~~lg~~~v---~~~~d---~~~----i~~~t~g~  282 (405)
                      +++|||.||+|++|..+++.+...|++|+.+.++... .+...+..+..|....   .|-.+   ...    +.+.  ..
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~--~~   79 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQR--LG   79 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHH--cC
Confidence            5789999999999999999999999999887654332 2233344445564322   23222   222    2222  24


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      .+|++|.+.|.
T Consensus        80 ~id~li~~ag~   90 (256)
T PRK12743         80 RIDVLVNNAGA   90 (256)
T ss_pred             CCCEEEECCCC
Confidence            68999998873

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=96.41  E-value=0.024  Score=51.48  Aligned_cols=79  Identities=16%  Similarity=0.270  Sum_probs=51.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE-E--eChh---hHHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-V--FTEE---ELRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v--~~~~---d~~~-i~~~t-~g~g~  284 (405)
                      .|+++||.|++|++|.+.+..+...|++|+.+.++..  +...+...+++... +  .|-.   +... +.+.. ...++
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   81 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEP--SETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFGHI   81 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchH--HHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999999999999999999999999988876531  23334444555322 1  2322   2332 22221 12468


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        82 d~li~~ag~   90 (248)
T TIGR01832        82 DILVNNAGI   90 (248)
T ss_pred             CEEEECCCC
Confidence            999999874

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK06180 short chain dehydrogenase; Provisional

Probab=96.41  E-value=0.0087  Score=55.55  Aligned_cols=77  Identities=13%  Similarity=0.193  Sum_probs=49.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH-cCCcE-E--eChhh---HHH-Hhhhc-CCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADY-V--FTEEE---LRN-ISRDA-SIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~-lg~~~-v--~~~~d---~~~-i~~~t-~g~g  283 (405)
                      .++++||.||+|++|.+.++.+...|++|+++.++.++    .+.+.+ .+... .  .|-.+   ... +.+.. .-++
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~----~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~   78 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAA----RADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGP   78 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHH----HHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            46789999999999999999998899999998876433    222222 22211 1  23222   222 22211 1246


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|+++++.|.
T Consensus        79 ~d~vv~~ag~   88 (277)
T PRK06180         79 IDVLVNNAGY   88 (277)
T ss_pred             CCEEEECCCc
Confidence            8999999885

>PRK07102 short chain dehydrogenase; Provisional

Probab=96.41  E-value=0.021  Score=51.72  Aligned_cols=77  Identities=18%  Similarity=0.200  Sum_probs=49.2

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE--e--Chhh---HHH-HhhhcCCCCCcE
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV--F--TEEE---LRN-ISRDASIPKPKL  286 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v--~--~~~d---~~~-i~~~t~g~g~Dv  286 (405)
                      .+++|.||+|++|...++.+...|++|+++.++.++.+...+.....+...+  +  |-.+   ... +.+.  ...+|+
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~--~~~~d~   79 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSL--PALPDI   79 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHH--hhcCCE
Confidence            5799999999999999999999999999998765543333333333222222  1  3222   222 2222  224699


Q ss_pred             EEECCCc
Q psy2960         287 ALNCVGG  293 (405)
Q Consensus       287 vld~~g~  293 (405)
                      ++.+.|.
T Consensus        80 vv~~ag~   86 (243)
T PRK07102         80 VLIAVGT   86 (243)
T ss_pred             EEECCcC
Confidence            9988763

>PRK05650 short chain dehydrogenase; Provisional

Probab=96.41  E-value=0.0098  Score=54.92  Aligned_cols=78  Identities=17%  Similarity=0.135  Sum_probs=51.3

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Ch---hhHHH-Hhhhc-CCCCCcEE
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TE---EELRN-ISRDA-SIPKPKLA  287 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~---~d~~~-i~~~t-~g~g~Dvv  287 (405)
                      +|||.||+|++|...+..+...|++|+.+.++.++.+...+.++..+.+..+   |-   ++... +.... ...++|++
T Consensus         2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~l   81 (270)
T PRK05650          2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDVI   81 (270)
T ss_pred             EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            6999999999999999988889999999887655444444444444443322   22   22222 22211 12468999


Q ss_pred             EECCCc
Q psy2960         288 LNCVGG  293 (405)
Q Consensus       288 ld~~g~  293 (405)
                      |++.|.
T Consensus        82 I~~ag~   87 (270)
T PRK05650         82 VNNAGV   87 (270)
T ss_pred             EECCCC
Confidence            999874

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.40  E-value=0.024  Score=53.48  Aligned_cols=81  Identities=15%  Similarity=0.172  Sum_probs=51.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc-chHHHHHHHHHcCCcEEe---Chh---hHHH-HhhhcCCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD-DIDKLKSYLKSLGADYVF---TEE---ELRN-ISRDASIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~-~~~~~~~~~~~lg~~~v~---~~~---d~~~-i~~~t~g~g~  284 (405)
                      .|.+++|.|+++++|.+.++.+...|++|+...++.+ ..+...+..+..|....+   |-.   +... +.+....+.+
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~g~i   90 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGLGGL   90 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHhCCC
Confidence            5789999999999999999998889999888765322 222333444444543322   222   2222 2221112479


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |++|++.|.
T Consensus        91 D~li~nAG~   99 (306)
T PRK07792         91 DIVVNNAGI   99 (306)
T ss_pred             CEEEECCCC
Confidence            999999874

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=96.38  E-value=0.067  Score=50.05  Aligned_cols=147  Identities=14%  Similarity=0.175  Sum_probs=78.3

Q ss_pred             CCCCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHH--HHHHHhhcCCCCCCEEEEeCCCcHHHH
Q psy2960         151 SLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTA--YRMLKDYNSLSPGDVVIQNGANSACGQ  228 (405)
Q Consensus       151 ~~~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta--~~al~~~~~~~~g~~VLI~ga~G~vG~  228 (405)
                      .+++|++.+..+    .|.++...+....+.+.+++.|-.+.    ...|.  ...+..  ...+|++||-.|+ |. |.
T Consensus       105 p~~~g~~~~i~p----~w~~~~~~~~~~~i~ldpg~aFgtG~----h~tt~l~l~~l~~--~~~~g~~VLDvGc-Gs-G~  172 (288)
T TIGR00406       105 PVQFGKRFWICP----SWRDVPSDEDALIIMLDPGLAFGTGT----HPTTSLCLEWLED--LDLKDKNVIDVGC-GS-GI  172 (288)
T ss_pred             CEEEcCeEEEEC----CCcCCCCCCCcEEEEECCCCcccCCC----CHHHHHHHHHHHh--hcCCCCEEEEeCC-Ch-hH
Confidence            467788877773    24444333445667777776664421    12222  222322  2458899999998 44 88


Q ss_pred             HHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHcCCcE-EeChhhHHHHhhhcCCCCCcEEEECCCchhH----HHHHHh
Q psy2960         229 NVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADY-VFTEEELRNISRDASIPKPKLALNCVGGNSA----TNLLRT  302 (405)
Q Consensus       229 ~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~lg~~~-v~~~~d~~~i~~~t~g~g~Dvvld~~g~~~~----~~~~~~  302 (405)
                      .++.+++ +|+ +++++--+....+...+.+...+... +......  .... ...++|+|+........    ....+.
T Consensus       173 lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~--~~~~-~~~~fDlVvan~~~~~l~~ll~~~~~~  248 (288)
T TIGR00406       173 LSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY--LEQP-IEGKADVIVANILAEVIKELYPQFSRL  248 (288)
T ss_pred             HHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc--cccc-cCCCceEEEEecCHHHHHHHHHHHHHH
Confidence            8877765 576 45555333222222222232233221 1110000  1111 13479999876544332    345689


Q ss_pred             cccCCEEEEEe
Q psy2960         303 LVSKGVMVTYG  313 (405)
Q Consensus       303 l~~~G~~v~~g  313 (405)
                      |+|+|.++..|
T Consensus       249 LkpgG~li~sg  259 (288)
T TIGR00406       249 VKPGGWLILSG  259 (288)
T ss_pred             cCCCcEEEEEe
Confidence            99999998876

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=96.37  E-value=0.026  Score=50.36  Aligned_cols=104  Identities=20%  Similarity=0.218  Sum_probs=64.2

Q ss_pred             HhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC--cEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCC
Q psy2960         206 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIP  282 (405)
Q Consensus       206 ~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~--~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~  282 (405)
                      .+...+++|++||-.|+  |.|..++.+++..+.  +|+++-.+++..+...+.+.++|.+.+ +-..|....  .....
T Consensus        70 ~~~l~~~~~~~VLDiG~--GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~--~~~~~  145 (215)
T TIGR00080        70 TELLELKPGMKVLEIGT--GSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQG--WEPLA  145 (215)
T ss_pred             HHHhCCCCcCEEEEECC--CccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccC--CcccC
Confidence            34467899999999998  568888889988764  466664444333333445556665433 111222110  11134


Q ss_pred             CCcEEEECCCchhH-HHHHHhcccCCEEEEEe
Q psy2960         283 KPKLALNCVGGNSA-TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       283 g~Dvvld~~g~~~~-~~~~~~l~~~G~~v~~g  313 (405)
                      .+|+|+-+...... ....+.|+++|+++..-
T Consensus       146 ~fD~Ii~~~~~~~~~~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       146 PYDRIYVTAAGPKIPEALIDQLKEGGILVMPV  177 (215)
T ss_pred             CCCEEEEcCCcccccHHHHHhcCcCcEEEEEE
Confidence            79988855444433 45679999999988753

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.36  E-value=0.13  Score=45.30  Aligned_cols=92  Identities=10%  Similarity=0.166  Sum_probs=58.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      .|.+|||.|+ |.+|...+..+...|++++++..  +..++..+.+.. +. ..+..+.+..    ..-.++|+||-|++
T Consensus         9 ~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~--~~~~~l~~l~~~-~~-i~~~~~~~~~----~~l~~adlViaaT~   79 (202)
T PRK06718          9 SNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISP--ELTENLVKLVEE-GK-IRWKQKEFEP----SDIVDAFLVIAATN   79 (202)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcC--CCCHHHHHHHhC-CC-EEEEecCCCh----hhcCCceEEEEcCC
Confidence            5789999999 99999999888889998887752  322333333333 21 1122222221    01246899999999


Q ss_pred             chhHHHHHHhcccCCEEEEEe
Q psy2960         293 GNSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       293 ~~~~~~~~~~l~~~G~~v~~g  313 (405)
                      .+.....+...+..+.++...
T Consensus        80 d~elN~~i~~~a~~~~lvn~~  100 (202)
T PRK06718         80 DPRVNEQVKEDLPENALFNVI  100 (202)
T ss_pred             CHHHHHHHHHHHHhCCcEEEC
Confidence            988876654333445566554

>PRK08278 short chain dehydrogenase; Provisional

Probab=96.35  E-value=0.02  Score=53.02  Aligned_cols=81  Identities=10%  Similarity=0.172  Sum_probs=51.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcch-------HHHHHHHHHcCCcEE---eChhh---HHH-Hhhh
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDI-------DKLKSYLKSLGADYV---FTEEE---LRN-ISRD  278 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~-------~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~  278 (405)
                      .|.++||.||+|++|...+..+...|++++++.++.+..       ++..+..+..+....   .|..+   ... +.+.
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~   84 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAKA   84 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHH
Confidence            568999999999999999999888999999988765421       111222334444322   23222   222 2221


Q ss_pred             c-CCCCCcEEEECCCc
Q psy2960         279 A-SIPKPKLALNCVGG  293 (405)
Q Consensus       279 t-~g~g~Dvvld~~g~  293 (405)
                      . ..+.+|++|++.|.
T Consensus        85 ~~~~g~id~li~~ag~  100 (273)
T PRK08278         85 VERFGGIDICVNNASA  100 (273)
T ss_pred             HHHhCCCCEEEECCCC
Confidence            1 12369999999874

>PRK06483 dihydromonapterin reductase; Provisional

Probab=96.35  E-value=0.026  Score=50.87  Aligned_cols=77  Identities=13%  Similarity=0.060  Sum_probs=50.7

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eCh---hhHHH-HhhhcC-CCCCcEE
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTE---EELRN-ISRDAS-IPKPKLA  287 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~---~d~~~-i~~~t~-g~g~Dvv  287 (405)
                      ++++||.|++|++|.+.++.+...|++|+.+.++.+..   .+..+..|...+ .|-   ++... +.+... ..++|++
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~l   78 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPA---IDGLRQAGAQCIQADFSTNAGIMAFIDELKQHTDGLRAI   78 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhH---HHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccEE
Confidence            46899999999999999999989999999987665432   333444554322 232   22222 222211 2468999


Q ss_pred             EECCCc
Q psy2960         288 LNCVGG  293 (405)
Q Consensus       288 ld~~g~  293 (405)
                      +++.|.
T Consensus        79 v~~ag~   84 (236)
T PRK06483         79 IHNASD   84 (236)
T ss_pred             EECCcc
Confidence            999873

>PRK07074 short chain dehydrogenase; Provisional

Probab=96.35  E-value=0.014  Score=53.30  Aligned_cols=80  Identities=13%  Similarity=0.102  Sum_probs=48.4

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhh---HHH-Hhhh-cCCCCCcEE
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEE---LRN-ISRD-ASIPKPKLA  287 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d---~~~-i~~~-t~g~g~Dvv  287 (405)
                      +.++||.|++|++|...+..+...|++++.+.++.+..+...+...+-....+ .|..+   ... +.+. ...+++|++
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v   81 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGPVDVL   81 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            56899999999999999998888999998888665432222222211112111 23222   222 2221 112468999


Q ss_pred             EECCCc
Q psy2960         288 LNCVGG  293 (405)
Q Consensus       288 ld~~g~  293 (405)
                      +.+.|.
T Consensus        82 i~~ag~   87 (257)
T PRK07074         82 VANAGA   87 (257)
T ss_pred             EECCCC
Confidence            999974

>PRK12367 short chain dehydrogenase; Provisional

Probab=96.35  E-value=0.014  Score=53.31  Aligned_cols=76  Identities=13%  Similarity=0.140  Sum_probs=49.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc-EEeChhhHHHHhhhcCCCCCcEEEECC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YVFTEEELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~-~v~~~~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                      .|++++|.||+|++|.+.++.+...|++|+.+.++....   .+........ ...|-.+.+++.+..  .++|+++++.
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~---~~~~~~~~~~~~~~D~~~~~~~~~~~--~~iDilVnnA   87 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINN---SESNDESPNEWIKWECGKEESLDKQL--ASLDVLILNH   87 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhh---hhhhccCCCeEEEeeCCCHHHHHHhc--CCCCEEEECC
Confidence            478999999999999999999999999999887654211   1111111111 123433433333332  3589999999


Q ss_pred             Cc
Q psy2960         292 GG  293 (405)
Q Consensus       292 g~  293 (405)
                      |.
T Consensus        88 G~   89 (245)
T PRK12367         88 GI   89 (245)
T ss_pred             cc
Confidence            74

>PRK06841 short chain dehydrogenase; Provisional

Probab=96.35  E-value=0.0095  Score=54.37  Aligned_cols=37  Identities=22%  Similarity=0.393  Sum_probs=32.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD  249 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~  249 (405)
                      .|.+|||.||+|++|...++.+...|++|+.+.++.+
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~   50 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSED   50 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            4789999999999999999999899999988876543

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.34  E-value=0.039  Score=48.85  Aligned_cols=102  Identities=15%  Similarity=0.118  Sum_probs=64.0

Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcC--CcEEEEecCCcchHHHHHHHHHcCCcE-E-eChhhHHH-HhhhcCC
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLGADY-V-FTEEELRN-ISRDASI  281 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G--~~v~~~~~~~~~~~~~~~~~~~lg~~~-v-~~~~d~~~-i~~~t~g  281 (405)
                      +...+++|++||=.|+  |.|..++.+++..+  .+++++-.+++..+...+.+...|... + +...|..+ +.   ..
T Consensus        66 ~~l~~~~~~~VLDiG~--GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~---~~  140 (205)
T PRK13944         66 ELIEPRPGMKILEVGT--GSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE---KH  140 (205)
T ss_pred             HhcCCCCCCEEEEECc--CccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc---cC
Confidence            4467889999999998  56888888888874  567776544433332334444555421 1 11222222 21   13


Q ss_pred             CCCcEEEECCCchhH-HHHHHhcccCCEEEEEe
Q psy2960         282 PKPKLALNCVGGNSA-TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       282 ~g~Dvvld~~g~~~~-~~~~~~l~~~G~~v~~g  313 (405)
                      ..+|+|+-+...... ...++.|++||+++..-
T Consensus       141 ~~fD~Ii~~~~~~~~~~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        141 APFDAIIVTAAASTIPSALVRQLKDGGVLVIPV  173 (205)
T ss_pred             CCccEEEEccCcchhhHHHHHhcCcCcEEEEEE
Confidence            479998876665444 45679999999997643

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=96.32  E-value=0.013  Score=57.31  Aligned_cols=76  Identities=17%  Similarity=0.225  Sum_probs=49.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcC--CcEE-eChhhHHHHhhhcCCCCCcEEEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG--ADYV-FTEEELRNISRDASIPKPKLALN  289 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg--~~~v-~~~~d~~~i~~~t~g~g~Dvvld  289 (405)
                      .|++|+|.||+|++|.+.+..+...|++|+++.++.++.+   +.....+  ...+ .|..|.+++.+..  .++|++|+
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~---~~~~~~~~~v~~v~~Dvsd~~~v~~~l--~~IDiLIn  251 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKIT---LEINGEDLPVKTLHWQVGQEAALAELL--EKVDILII  251 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHhhcCCCeEEEEeeCCCHHHHHHHh--CCCCEEEE
Confidence            4789999999999999999988889999998876543221   1121111  1111 2334433333332  36899999


Q ss_pred             CCCc
Q psy2960         290 CVGG  293 (405)
Q Consensus       290 ~~g~  293 (405)
                      +.|.
T Consensus       252 nAGi  255 (406)
T PRK07424        252 NHGI  255 (406)
T ss_pred             CCCc
Confidence            8873

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.31  E-value=0.037  Score=54.66  Aligned_cols=143  Identities=15%  Similarity=0.217  Sum_probs=88.2

Q ss_pred             CCCccceEEEEEEEcCCCCCCCCCCEEEec-C---------------CCCCcccceEeecccceEE---c-CCCCChhhh
Q psy2960         132 AVPGFEGVGEVVEVGSDVSSLAVGDHVIPD-T---------------QHLGTWRNYGKFNHDVLMK---V-PKDIALTEI  191 (405)
Q Consensus       132 ~~lG~E~~G~V~~vG~~v~~~~~GdrV~~~-~---------------~~~G~~a~~~~v~~~~~~~---i-P~~~s~~~A  191 (405)
                      ..-|.|+++.+.+|+++++..-+|+.-+.- .               ..++.|++++.+.. .+..   + +..+|...+
T Consensus        88 ~~~~~~a~~hl~~Va~GldS~V~GE~qI~gQvk~a~~~a~~~~~~g~~l~~lf~~a~~~~k-~vr~~t~i~~~~vSv~~~  166 (417)
T TIGR01035        88 ILTGESAVEHLFRVASGLDSMVVGETQILGQVKNAYKVAQEEKTVGKVLERLFQKAFSVGK-RVRTETDISAGAVSISSA  166 (417)
T ss_pred             hcCchHHHHHHHHHHhhhhhhhcCChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhh-hhhhhcCCCCCCcCHHHH
Confidence            357889999999999998875555543310 0               11357888887765 3222   3 222332222


Q ss_pred             ccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHcCCcEEeChh
Q psy2960         192 SGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEE  270 (405)
Q Consensus       192 a~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~  270 (405)
                      |        .-.+. +..+..+|++|+|.|+ |.+|..+++.++..|+ +++++.++.+   ...+.+..+|.. .++.+
T Consensus       167 A--------v~la~-~~~~~l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~---ra~~la~~~g~~-~i~~~  232 (417)
T TIGR01035       167 A--------VELAE-RIFGSLKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYE---RAEDLAKELGGE-AVKFE  232 (417)
T ss_pred             H--------HHHHH-HHhCCccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHH---HHHHHHHHcCCe-EeeHH
Confidence            1        11122 2234457899999999 9999999999999995 4555544322   223466677764 34444


Q ss_pred             hHHH-HhhhcCCCCCcEEEECCCchh
Q psy2960         271 ELRN-ISRDASIPKPKLALNCVGGNS  295 (405)
Q Consensus       271 d~~~-i~~~t~g~g~Dvvld~~g~~~  295 (405)
                      +..+ +      .++|+||+|++.+.
T Consensus       233 ~l~~~l------~~aDvVi~aT~s~~  252 (417)
T TIGR01035       233 DLEEYL------AEADIVISSTGAPH  252 (417)
T ss_pred             HHHHHH------hhCCEEEECCCCCC
Confidence            4433 3      25799999998654

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PLN02253 xanthoxin dehydrogenase

Probab=96.31  E-value=0.016  Score=53.86  Aligned_cols=37  Identities=19%  Similarity=0.392  Sum_probs=32.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD  249 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~  249 (405)
                      .|.++||.|++|++|.+.++.+...|++|+.+.++.+
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~   53 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDD   53 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            4789999999999999999988889999988876543

>KOG0725|consensus

Probab=96.30  E-value=0.028  Score=51.98  Aligned_cols=82  Identities=18%  Similarity=0.289  Sum_probs=55.2

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc---E---EeCh---hhHHH-Hhhhc-C
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD---Y---VFTE---EELRN-ISRDA-S  280 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~---~---v~~~---~d~~~-i~~~t-~  280 (405)
                      -.|..++|.|++.|+|.+.+..+...|++|+++.++.+..++........+..   .   +.|-   ++.++ +.... .
T Consensus         6 l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~   85 (270)
T KOG0725|consen    6 LAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEK   85 (270)
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHH
Confidence            36899999999999999999999999999999998776544444444444442   1   1222   22222 21111 1


Q ss_pred             -CCCCcEEEECCCc
Q psy2960         281 -IPKPKLALNCVGG  293 (405)
Q Consensus       281 -g~g~Dvvld~~g~  293 (405)
                       .+.+|++++..|.
T Consensus        86 ~~GkidiLvnnag~   99 (270)
T KOG0725|consen   86 FFGKIDILVNNAGA   99 (270)
T ss_pred             hCCCCCEEEEcCCc
Confidence             3568999998874

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.29  E-value=0.016  Score=55.77  Aligned_cols=92  Identities=12%  Similarity=0.067  Sum_probs=60.0

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcC-CcEEEEecCCcchHHHHHHHHHcC---C-cEEeChhhHHHHhhhcCCCCCcEEEE
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLG---A-DYVFTEEELRNISRDASIPKPKLALN  289 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G-~~v~~~~~~~~~~~~~~~~~~~lg---~-~~v~~~~d~~~i~~~t~g~g~Dvvld  289 (405)
                      .+|||.|+ |+||+.+++.+...| .+|+++.++.++.    +.+....   . ...+|-.|.+.+.++.  .++|+||+
T Consensus         2 ~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~----~~i~~~~~~~v~~~~vD~~d~~al~~li--~~~d~VIn   74 (389)
T COG1748           2 MKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKC----ARIAELIGGKVEALQVDAADVDALVALI--KDFDLVIN   74 (389)
T ss_pred             CcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHH----HHHHhhccccceeEEecccChHHHHHHH--hcCCEEEE
Confidence            47999999 999999999988888 7888888776653    2232222   2 2334554544322222  24599999


Q ss_pred             CCCchhHHHHH-HhcccCCEEEEEe
Q psy2960         290 CVGGNSATNLL-RTLVSKGVMVTYG  313 (405)
Q Consensus       290 ~~g~~~~~~~~-~~l~~~G~~v~~g  313 (405)
                      |.+.......+ .|++.+=.++.+.
T Consensus        75 ~~p~~~~~~i~ka~i~~gv~yvDts   99 (389)
T COG1748          75 AAPPFVDLTILKACIKTGVDYVDTS   99 (389)
T ss_pred             eCCchhhHHHHHHHHHhCCCEEEcc
Confidence            99987766666 4444444555554

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.27  E-value=0.045  Score=50.63  Aligned_cols=96  Identities=13%  Similarity=0.193  Sum_probs=68.6

Q ss_pred             ccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh
Q psy2960         192 SGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE  271 (405)
Q Consensus       192 a~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d  271 (405)
                      ..+||+....+..+....---.|.+|+|.|.+.-+|.-++.++...||+|+++-+..                     .+
T Consensus       136 ~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t---------------------~~  194 (286)
T PRK14175        136 TFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS---------------------KD  194 (286)
T ss_pred             CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc---------------------hh
Confidence            456777776666665532224799999999976699999999999999988775321                     11


Q ss_pred             HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEecc
Q psy2960         272 LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       272 ~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~  315 (405)
                      ..+ +      +..|+||.++|.+.+... +.++++-.++.+|..
T Consensus       195 l~~~~------~~ADIVIsAvg~p~~i~~-~~vk~gavVIDvGi~  232 (286)
T PRK14175        195 MASYL------KDADVIVSAVGKPGLVTK-DVVKEGAVIIDVGNT  232 (286)
T ss_pred             HHHHH------hhCCEEEECCCCCcccCH-HHcCCCcEEEEcCCC
Confidence            122 2      246999999998755332 568888888888843

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=96.24  E-value=0.042  Score=47.10  Aligned_cols=100  Identities=21%  Similarity=0.270  Sum_probs=68.0

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEEeChh-hHHH-HhhhcCCCCCc
Q psy2960         209 NSLSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE-ELRN-ISRDASIPKPK  285 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~-d~~~-i~~~t~g~g~D  285 (405)
                      ..++||+.++=.|+  |.|..++++|+.. .++++++-++++..+.....+.++|.+.+.--+ +..+ +.++   ..+|
T Consensus        30 L~~~~g~~l~DIGa--GtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~---~~~d  104 (187)
T COG2242          30 LRPRPGDRLWDIGA--GTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDL---PSPD  104 (187)
T ss_pred             hCCCCCCEEEEeCC--CccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCC---CCCC
Confidence            57899998888888  5688889999544 568888876655555556667788987553221 2222 3322   2689


Q ss_pred             EEEECCCc---hhHHHHHHhcccCCEEEEEe
Q psy2960         286 LALNCVGG---NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       286 vvld~~g~---~~~~~~~~~l~~~G~~v~~g  313 (405)
                      .+|---|+   +.++.++..|+++|++|.-.
T Consensus       105 aiFIGGg~~i~~ile~~~~~l~~ggrlV~na  135 (187)
T COG2242         105 AIFIGGGGNIEEILEAAWERLKPGGRLVANA  135 (187)
T ss_pred             EEEECCCCCHHHHHHHHHHHcCcCCeEEEEe
Confidence            98865443   23456789999999998743

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=96.23  E-value=0.042  Score=49.47  Aligned_cols=90  Identities=18%  Similarity=0.271  Sum_probs=62.5

Q ss_pred             EEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe-ChhhHHHHhhhcCCCCCcEEEECCCc--
Q psy2960         217 VIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVGG--  293 (405)
Q Consensus       217 VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~-~~~d~~~i~~~t~g~g~Dvvld~~g~--  293 (405)
                      |+|.|++|.+|...++.+...+.+|.+.+++..  ..+.+.++..|+..+. |..|.+.+.+..  .|+|.||.+++.  
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~--~~~~~~l~~~g~~vv~~d~~~~~~l~~al--~g~d~v~~~~~~~~   76 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPS--SDRAQQLQALGAEVVEADYDDPESLVAAL--KGVDAVFSVTPPSH   76 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSH--HHHHHHHHHTTTEEEES-TT-HHHHHHHH--TTCSEEEEESSCSC
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccc--hhhhhhhhcccceEeecccCCHHHHHHHH--cCCceEEeecCcch
Confidence            799999999999999999999999999998752  3446667788997653 444444444442  489999999883  


Q ss_pred             -hhH---HHHHHhcccCC--EEE
Q psy2960         294 -NSA---TNLLRTLVSKG--VMV  310 (405)
Q Consensus       294 -~~~---~~~~~~l~~~G--~~v  310 (405)
                       ...   ...+++..+-|  +|+
T Consensus        77 ~~~~~~~~~li~Aa~~agVk~~v   99 (233)
T PF05368_consen   77 PSELEQQKNLIDAAKAAGVKHFV   99 (233)
T ss_dssp             CCHHHHHHHHHHHHHHHT-SEEE
T ss_pred             hhhhhhhhhHHHhhhccccceEE
Confidence             222   23455555544  444

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK12746 short chain dehydrogenase; Provisional

Probab=96.21  E-value=0.038  Score=50.29  Aligned_cols=81  Identities=16%  Similarity=0.209  Sum_probs=48.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEe-cCCcchHHHHHHHHHcCCcE-Ee--Chhh---HHH-Hhhh---c--
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIV-RNRDDIDKLKSYLKSLGADY-VF--TEEE---LRN-ISRD---A--  279 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~-~~~~~~~~~~~~~~~lg~~~-v~--~~~d---~~~-i~~~---t--  279 (405)
                      .+.+++|.|++|++|...++.+...|+++++.. ++.++.+...+.....+... ++  |-.|   +.. +.+.   .  
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~   84 (254)
T PRK12746          5 DGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNELQI   84 (254)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHHhcc
Confidence            467999999999999999999888999987754 43332222222333333221 12  3222   222 2222   1  


Q ss_pred             --CCCCCcEEEECCCc
Q psy2960         280 --SIPKPKLALNCVGG  293 (405)
Q Consensus       280 --~g~g~Dvvld~~g~  293 (405)
                        +..++|++|.+.|.
T Consensus        85 ~~~~~~id~vi~~ag~  100 (254)
T PRK12746         85 RVGTSEIDILVNNAGI  100 (254)
T ss_pred             ccCCCCccEEEECCCC
Confidence              12468999999874

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=96.18  E-value=0.036  Score=50.59  Aligned_cols=99  Identities=14%  Similarity=0.139  Sum_probs=60.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH-cCCcEE-eChhh-HHHHhhhcCCCCCcEEEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADYV-FTEEE-LRNISRDASIPKPKLALN  289 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~-lg~~~v-~~~~d-~~~i~~~t~g~g~Dvvld  289 (405)
                      .+.+|||.||+|.+|...++.+...|++|++++++.+...   ..... .++..+ .|..+ ...+.+.. +.++|+||.
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~---~~~~~~~~~~~~~~Dl~d~~~~l~~~~-~~~~d~vi~   91 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAK---TSLPQDPSLQIVRADVTEGSDKLVEAI-GDDSDAVIC   91 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHH---HhcccCCceEEEEeeCCCCHHHHHHHh-hcCCCEEEE
Confidence            4679999999999999999988888999998887643211   11111 123222 24333 22232221 236899999


Q ss_pred             CCCchh--------------HHHHHHhccc--CCEEEEEecc
Q psy2960         290 CVGGNS--------------ATNLLRTLVS--KGVMVTYGGM  315 (405)
Q Consensus       290 ~~g~~~--------------~~~~~~~l~~--~G~~v~~g~~  315 (405)
                      +.|...              ....++.+..  .++++.++..
T Consensus        92 ~~g~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~  133 (251)
T PLN00141         92 ATGFRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSI  133 (251)
T ss_pred             CCCCCcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccc
Confidence            877421              1233444443  3688888754

>PRK08251 short chain dehydrogenase; Provisional

Probab=96.16  E-value=0.037  Score=50.18  Aligned_cols=79  Identities=16%  Similarity=0.188  Sum_probs=49.4

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc--CCc-EE--eChhh---HHH-Hhhhc-CCCC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL--GAD-YV--FTEEE---LRN-ISRDA-SIPK  283 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l--g~~-~v--~~~~d---~~~-i~~~t-~g~g  283 (405)
                      +.++||.|++|++|...++.+...|++++.+.++.+..+.....+.+.  +.. ++  .|..+   ... +.+.. ...+
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG   81 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            568999999999999999888888999988877654433322322222  221 11  23322   222 22221 1346


Q ss_pred             CcEEEECCC
Q psy2960         284 PKLALNCVG  292 (405)
Q Consensus       284 ~Dvvld~~g  292 (405)
                      +|+++++.|
T Consensus        82 id~vi~~ag   90 (248)
T PRK08251         82 LDRVIVNAG   90 (248)
T ss_pred             CCEEEECCC
Confidence            899999987

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=96.16  E-value=0.043  Score=50.08  Aligned_cols=79  Identities=16%  Similarity=0.241  Sum_probs=50.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eCh---hhHHH-Hhhh-cCCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTE---EELRN-ISRD-ASIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~---~d~~~-i~~~-t~g~g~  284 (405)
                      .|.++||.|++|++|.+.++.+...|++|+.+.++. . +...+.+.+++.+..   .|-   ++... +.+. .....+
T Consensus         9 ~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~-~-~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   86 (253)
T PRK08993          9 EGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVE-P-TETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFGHI   86 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcc-h-HHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            478999999999999999999999999998764332 2 233344445553221   232   22332 2222 113468


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        87 D~li~~Ag~   95 (253)
T PRK08993         87 DILVNNAGL   95 (253)
T ss_pred             CEEEECCCC
Confidence            999999974

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=96.16  E-value=0.057  Score=50.51  Aligned_cols=77  Identities=12%  Similarity=0.137  Sum_probs=45.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCC---cchHHHHHHHHHcCCc---EEeChhhHHHHhhhcCCCCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNR---DDIDKLKSYLKSLGAD---YVFTEEELRNISRDASIPKPK  285 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~---~~~~~~~~~~~~lg~~---~v~~~~d~~~i~~~t~g~g~D  285 (405)
                      .+++++|.|+ ||+|.+++..+...|++ ++++.++.   ++.++..+.+.+.+..   ...+.++...+.+.  -..+|
T Consensus       125 ~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~--~~~~D  201 (289)
T PRK12548        125 KGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAE--IASSD  201 (289)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhh--hccCC
Confidence            5789999999 89999999888899997 66665554   2222222222222221   11233332222222  12469


Q ss_pred             EEEECCC
Q psy2960         286 LALNCVG  292 (405)
Q Consensus       286 vvld~~g  292 (405)
                      +++||+.
T Consensus       202 ilINaTp  208 (289)
T PRK12548        202 ILVNATL  208 (289)
T ss_pred             EEEEeCC
Confidence            9999885

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=96.14  E-value=0.035  Score=50.45  Aligned_cols=80  Identities=15%  Similarity=0.175  Sum_probs=50.8

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eCh---hhHHH-Hhhhc-CCCCCc
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTE---EELRN-ISRDA-SIPKPK  285 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~---~d~~~-i~~~t-~g~g~D  285 (405)
                      +.++||.|++|++|...+..+...|++|+++.++.+..+...+.....+....   .|.   ++... +.+.. ...++|
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   80 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGLD   80 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence            35899999999999999999888999999988765443333333333343211   232   22222 22211 134689


Q ss_pred             EEEECCCc
Q psy2960         286 LALNCVGG  293 (405)
Q Consensus       286 vvld~~g~  293 (405)
                      +||.+.|.
T Consensus        81 ~vi~~a~~   88 (255)
T TIGR01963        81 ILVNNAGI   88 (255)
T ss_pred             EEEECCCC
Confidence            99988763

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK09135 pteridine reductase; Provisional

Probab=96.14  E-value=0.027  Score=50.94  Aligned_cols=80  Identities=14%  Similarity=0.144  Sum_probs=49.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcch-HHHHHHHHHcCC-c-EE--eChhh---HHH-Hhhh-cCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDI-DKLKSYLKSLGA-D-YV--FTEEE---LRN-ISRD-ASIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~-~~~~~~~~~lg~-~-~v--~~~~d---~~~-i~~~-t~g~  282 (405)
                      .+.+|||.|++|++|..++......|++|+++.++.+.. ++....+..... . .+  .|-.+   ... +.+. ....
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   84 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAFG   84 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            467999999999999999999888999999998654321 222222222221 1 11  23333   222 2211 1124


Q ss_pred             CCcEEEECCC
Q psy2960         283 KPKLALNCVG  292 (405)
Q Consensus       283 g~Dvvld~~g  292 (405)
                      ++|+||.+.|
T Consensus        85 ~~d~vi~~ag   94 (249)
T PRK09135         85 RLDALVNNAS   94 (249)
T ss_pred             CCCEEEECCC
Confidence            6899999997

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=96.13  E-value=0.03  Score=50.73  Aligned_cols=81  Identities=17%  Similarity=0.226  Sum_probs=50.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC-cchHHHHHHHHHcCCcEE-e--Chhh---HHH-HhhhcC-CCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR-DDIDKLKSYLKSLGADYV-F--TEEE---LRN-ISRDAS-IPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~-~~~~~~~~~~~~lg~~~v-~--~~~d---~~~-i~~~t~-g~g  283 (405)
                      .+.+++|.|++|++|...+..+...|++++++.+.. +..++..+.+++.+.+.. +  |-.+   ... +.+... -..
T Consensus         5 ~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (247)
T PRK12935          5 NGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHFGK   84 (247)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            478999999999999999998888999998765432 222233344444444322 1  2222   222 222211 245


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|+++.+.|.
T Consensus        85 id~vi~~ag~   94 (247)
T PRK12935         85 VDILVNNAGI   94 (247)
T ss_pred             CCEEEECCCC
Confidence            8999999874

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=96.13  E-value=0.021  Score=60.06  Aligned_cols=117  Identities=11%  Similarity=0.116  Sum_probs=73.8

Q ss_pred             CcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEe
Q psy2960         166 GTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIV  245 (405)
Q Consensus       166 G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~  245 (405)
                      -+..+|.-+++...+.+ +.|++|+|-.-..+         . ..--.|++|||.|++|++|.+.++.+...|++|+++.
T Consensus       377 ~~~~~~~~~~~~~~f~~-eyw~~e~~kl~~~~---------~-~~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~  445 (676)
T TIGR02632       377 EAVSEYVSLPEQEAFDI-EYWPLEEAKLRRMP---------K-EKTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLAD  445 (676)
T ss_pred             hcccceecCchhhccch-hhhhhhHHhhccCC---------C-CcCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEe
Confidence            35577888888888888 88988887442111         0 1112478999999999999999999989999999887


Q ss_pred             cCCcchHHHHHHHH-HcCCcEE----eCh---hhHHH-Hhhhc-CCCCCcEEEECCCc
Q psy2960         246 RNRDDIDKLKSYLK-SLGADYV----FTE---EELRN-ISRDA-SIPKPKLALNCVGG  293 (405)
Q Consensus       246 ~~~~~~~~~~~~~~-~lg~~~v----~~~---~d~~~-i~~~t-~g~g~Dvvld~~g~  293 (405)
                      ++.+..+...+.+. ..+...+    .|-   ++... +.+.. ..+++|+++++.|.
T Consensus       446 r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~g~iDilV~nAG~  503 (676)
T TIGR02632       446 LNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAYGGVDIVVNNAGI  503 (676)
T ss_pred             CCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhcCCCcEEEECCCC
Confidence            66543222222222 1232111    232   22222 22211 13479999999984

>PLN02240 UDP-glucose 4-epimerase

Probab=96.12  E-value=0.069  Score=51.28  Aligned_cols=81  Identities=12%  Similarity=0.153  Sum_probs=48.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH----cC--CcEE-eChhhHHHHhhhcCCCCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS----LG--ADYV-FTEEELRNISRDASIPKPK  285 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~----lg--~~~v-~~~~d~~~i~~~t~g~g~D  285 (405)
                      .+.+|||.||+|.+|...++.+...|.+|+++.+.........+....    .+  ...+ .|-.+...+.+.....++|
T Consensus         4 ~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~d   83 (352)
T PLN02240          4 MGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRFD   83 (352)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCCC
Confidence            367999999999999999999888999998886433221111111211    11  2222 2333332233322234789


Q ss_pred             EEEECCCc
Q psy2960         286 LALNCVGG  293 (405)
Q Consensus       286 vvld~~g~  293 (405)
                      +|+++.+.
T Consensus        84 ~vih~a~~   91 (352)
T PLN02240         84 AVIHFAGL   91 (352)
T ss_pred             EEEEcccc
Confidence            99999863

>PRK05599 hypothetical protein; Provisional

Probab=96.11  E-value=0.029  Score=51.05  Aligned_cols=77  Identities=18%  Similarity=0.238  Sum_probs=49.4

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE--Ee--Chhh---HHH-Hhhhc-CCCCCcE
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY--VF--TEEE---LRN-ISRDA-SIPKPKL  286 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~--v~--~~~d---~~~-i~~~t-~g~g~Dv  286 (405)
                      +++|.|+++|+|.+.+.... .|++|+.+.++.++.++..+.+++.|.+.  .+  |-.|   ... +.+.. ..+++|+
T Consensus         2 ~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~   80 (246)
T PRK05599          2 SILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEISL   80 (246)
T ss_pred             eEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCCE
Confidence            68999999999999888765 59999998877655444445555555432  22  3222   222 22211 1246899


Q ss_pred             EEECCCc
Q psy2960         287 ALNCVGG  293 (405)
Q Consensus       287 vld~~g~  293 (405)
                      ++++.|.
T Consensus        81 lv~nag~   87 (246)
T PRK05599         81 AVVAFGI   87 (246)
T ss_pred             EEEecCc
Confidence            9998874

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.11  E-value=0.21  Score=44.09  Aligned_cols=92  Identities=12%  Similarity=0.091  Sum_probs=59.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      .|.+|||.|+ |.+|...++.+...|++|+++...  ..++..+.. +.|.-..+ .+++.. ..   -.++|+|+-+++
T Consensus         8 ~gk~vlVvGg-G~va~rk~~~Ll~~ga~VtVvsp~--~~~~l~~l~-~~~~i~~~-~~~~~~-~d---l~~~~lVi~at~   78 (205)
T TIGR01470         8 EGRAVLVVGG-GDVALRKARLLLKAGAQLRVIAEE--LESELTLLA-EQGGITWL-ARCFDA-DI---LEGAFLVIAATD   78 (205)
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHHCCCEEEEEcCC--CCHHHHHHH-HcCCEEEE-eCCCCH-HH---hCCcEEEEECCC
Confidence            4789999999 999999999999999998877532  223333333 33321111 122211 00   246899999999


Q ss_pred             chhHHH-HHHhcccCCEEEEEe
Q psy2960         293 GNSATN-LLRTLVSKGVMVTYG  313 (405)
Q Consensus       293 ~~~~~~-~~~~l~~~G~~v~~g  313 (405)
                      .+.... .....+..|..+.+.
T Consensus        79 d~~ln~~i~~~a~~~~ilvn~~  100 (205)
T TIGR01470        79 DEELNRRVAHAARARGVPVNVV  100 (205)
T ss_pred             CHHHHHHHHHHHHHcCCEEEEC
Confidence            876654 456666778777654

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK07069 short chain dehydrogenase; Validated

Probab=96.11  E-value=0.057  Score=48.98  Aligned_cols=78  Identities=14%  Similarity=0.190  Sum_probs=47.5

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecC-CcchHHHHHHHHHc-CCcEE----eChhh---HHH-Hhhhc-CCCCC
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRN-RDDIDKLKSYLKSL-GADYV----FTEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~-~~~~~~~~~~~~~l-g~~~v----~~~~d---~~~-i~~~t-~g~g~  284 (405)
                      +++|.|++|++|...++.+...|++|+.+.++ .+..+...+.++.. +...+    .|-.+   ... +.+.. .-+++
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   80 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGL   80 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence            38999999999999999998899999988866 33322222333322 22111    23222   222 22211 12468


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++.+.|.
T Consensus        81 d~vi~~ag~   89 (251)
T PRK07069         81 SVLVNNAGV   89 (251)
T ss_pred             cEEEECCCc
Confidence            999999873

>PRK09134 short chain dehydrogenase; Provisional

Probab=96.10  E-value=0.032  Score=51.05  Aligned_cols=81  Identities=15%  Similarity=0.204  Sum_probs=50.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcc-hHHHHHHHHHcCCcE-E--eChhh---HHH-Hhhhc-CCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYLKSLGADY-V--FTEEE---LRN-ISRDA-SIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~-~~~~~~~~~~lg~~~-v--~~~~d---~~~-i~~~t-~g~g  283 (405)
                      .+.++||.|++|++|...++.+...|++++.+.+..+. .+...+..+..+... +  .|-.|   ... +.+.. ...+
T Consensus         8 ~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~   87 (258)
T PRK09134          8 APRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAALGP   87 (258)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            46799999999999999999888999999887754322 122222333334422 1  23222   222 22211 1246


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|++|.+.|.
T Consensus        88 iD~vi~~ag~   97 (258)
T PRK09134         88 ITLLVNNASL   97 (258)
T ss_pred             CCEEEECCcC
Confidence            8999999873

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.10  E-value=0.031  Score=51.34  Aligned_cols=80  Identities=14%  Similarity=0.210  Sum_probs=48.7

Q ss_pred             CCCEEEEeCC--CcHHHHHHHHHHHHcCCcEEEEecCCcchHHHH-HHHHHcCCcEEe--Ch---hhHHH-Hhhhc-CCC
Q psy2960         213 PGDVVIQNGA--NSACGQNVIQIARHWGLKTINIVRNRDDIDKLK-SYLKSLGADYVF--TE---EELRN-ISRDA-SIP  282 (405)
Q Consensus       213 ~g~~VLI~ga--~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~-~~~~~lg~~~v~--~~---~d~~~-i~~~t-~g~  282 (405)
                      .|+++||.||  ++++|.++++.+...|++|+.+.+. +..++++ +...+++....+  |-   ++... +.+.. ..+
T Consensus         5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   83 (260)
T PRK06997          5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVG-DRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHWD   83 (260)
T ss_pred             CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccc-hHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHhC
Confidence            5789999996  5799999999988899999876432 1112222 233344533222  32   22333 22221 125


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      .+|+++++.|.
T Consensus        84 ~iD~lvnnAG~   94 (260)
T PRK06997         84 GLDGLVHSIGF   94 (260)
T ss_pred             CCcEEEEcccc
Confidence            79999998863

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.10  E-value=0.026  Score=56.95  Aligned_cols=73  Identities=19%  Similarity=0.245  Sum_probs=51.6

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH-HhhhcCCCCCcEEE
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLAL  288 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~Dvvl  288 (405)
                      .+.+|++|+|.|. |..|++++++++..|++|++.-..    +.+.+.++++|...+ ......+ +      ..+|+|+
T Consensus         8 ~~~~~~~v~V~G~-G~sG~aa~~~L~~~G~~v~~~D~~----~~~~~~l~~~g~~~~-~~~~~~~~l------~~~D~VV   75 (488)
T PRK03369          8 PLLPGAPVLVAGA-GVTGRAVLAALTRFGARPTVCDDD----PDALRPHAERGVATV-STSDAVQQI------ADYALVV   75 (488)
T ss_pred             cccCCCeEEEEcC-CHHHHHHHHHHHHCCCEEEEEcCC----HHHHHHHHhCCCEEE-cCcchHhHh------hcCCEEE
Confidence            4568999999999 999999999999999998885422    223445667787543 2221112 2      2469999


Q ss_pred             ECCCch
Q psy2960         289 NCVGGN  294 (405)
Q Consensus       289 d~~g~~  294 (405)
                      .+.|-+
T Consensus        76 ~SpGi~   81 (488)
T PRK03369         76 TSPGFR   81 (488)
T ss_pred             ECCCCC
Confidence            999864

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.07  E-value=0.043  Score=50.55  Aligned_cols=79  Identities=18%  Similarity=0.270  Sum_probs=48.6

Q ss_pred             CCCEEEEeCCCc--HHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHH-HcCCcEEe--C---hhhHHH-HhhhcC-CC
Q psy2960         213 PGDVVIQNGANS--ACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGADYVF--T---EEELRN-ISRDAS-IP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G--~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~-~lg~~~v~--~---~~d~~~-i~~~t~-g~  282 (405)
                      .|+++||.||++  |+|.++++.+...|++++.+.++ ++.+...+.+. +.+....+  |   .++... +.+... .+
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   83 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQN-DKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVWP   83 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecc-hhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhcC
Confidence            578999999975  89999999988899998877654 22222233332 23322222  3   223333 322221 24


Q ss_pred             CCcEEEECCC
Q psy2960         283 KPKLALNCVG  292 (405)
Q Consensus       283 g~Dvvld~~g  292 (405)
                      .+|+++++.|
T Consensus        84 ~iD~linnAg   93 (262)
T PRK07984         84 KFDGFVHSIG   93 (262)
T ss_pred             CCCEEEECCc
Confidence            6899999997

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=96.05  E-value=0.084  Score=49.72  Aligned_cols=31  Identities=13%  Similarity=0.216  Sum_probs=29.3

Q ss_pred             CCCEEEEeCC--CcHHHHHHHHHHHHcCCcEEE
Q psy2960         213 PGDVVIQNGA--NSACGQNVIQIARHWGLKTIN  243 (405)
Q Consensus       213 ~g~~VLI~ga--~G~vG~~aiqla~~~G~~v~~  243 (405)
                      .|+++||.|+  +.|+|.++++.+...|++|+.
T Consensus         8 ~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~   40 (303)
T PLN02730          8 RGKRAFIAGVADDNGYGWAIAKALAAAGAEILV   40 (303)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE
Confidence            5899999999  799999999999999999988

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=96.03  E-value=0.045  Score=49.33  Aligned_cols=79  Identities=13%  Similarity=0.160  Sum_probs=47.6

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc-chHHHHHHHHHcCCcE-E--eChh---hHHH-Hhhhc-CCCCCc
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD-DIDKLKSYLKSLGADY-V--FTEE---ELRN-ISRDA-SIPKPK  285 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~-~~~~~~~~~~~lg~~~-v--~~~~---d~~~-i~~~t-~g~g~D  285 (405)
                      +++||+|++|++|...+..+...|++++++.++.. ..++..+.....+... +  .|..   +... +.+.. ....+|
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPID   80 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCc
Confidence            47899999999999999999999999998886322 2222222222223221 1  1222   2222 22211 134689


Q ss_pred             EEEECCCc
Q psy2960         286 LALNCVGG  293 (405)
Q Consensus       286 vvld~~g~  293 (405)
                      +||.+.|.
T Consensus        81 ~vi~~ag~   88 (242)
T TIGR01829        81 VLVNNAGI   88 (242)
T ss_pred             EEEECCCC
Confidence            99999873

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.03  E-value=0.051  Score=49.61  Aligned_cols=78  Identities=13%  Similarity=0.190  Sum_probs=49.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eCh---hhHHH-Hhhhc-CCCCCcE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTE---EELRN-ISRDA-SIPKPKL  286 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~---~d~~~-i~~~t-~g~g~Dv  286 (405)
                      .|.+++|.|++|++|.+.++.+...|++|+.+.++.+.   ..+.++..+...+ .|-   ++... +.+.. ..+++|+
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~---~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~   82 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAEN---EAKELREKGVFTIKCDVGNRDQVKKSKEVVEKEFGRVDV   82 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHH---HHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            47899999999999999999999999999877654332   2233333333222 232   22222 22221 1246899


Q ss_pred             EEECCCc
Q psy2960         287 ALNCVGG  293 (405)
Q Consensus       287 vld~~g~  293 (405)
                      +|+|.|.
T Consensus        83 li~~ag~   89 (255)
T PRK06463         83 LVNNAGI   89 (255)
T ss_pred             EEECCCc
Confidence            9999874

>PRK08226 short chain dehydrogenase; Provisional

Probab=96.03  E-value=0.052  Score=49.71  Aligned_cols=79  Identities=19%  Similarity=0.266  Sum_probs=50.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE-E--eCh---hhHHH-Hhhh-cCCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-V--FTE---EELRN-ISRD-ASIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v--~~~---~d~~~-i~~~-t~g~g~  284 (405)
                      .+.+++|.|++|++|.+.+..+...|++|+.+.++.+ ..+..+.....+... .  .|-   ++... +.+. .....+
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~-~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i   83 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGANLILLDISPE-IEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRI   83 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH-HHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999999999999999999999999888876543 222233333334331 1  232   22222 2221 113468


Q ss_pred             cEEEECCC
Q psy2960         285 KLALNCVG  292 (405)
Q Consensus       285 Dvvld~~g  292 (405)
                      |++|.+.|
T Consensus        84 d~vi~~ag   91 (263)
T PRK08226         84 DILVNNAG   91 (263)
T ss_pred             CEEEECCC
Confidence            99999888

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=96.02  E-value=0.035  Score=50.90  Aligned_cols=35  Identities=11%  Similarity=0.249  Sum_probs=31.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN  247 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~  247 (405)
                      .|+++||.||++++|.+.+..+...|++|+.+.++
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~   41 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNS   41 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence            57899999999999999999999999998877644

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=96.02  E-value=0.075  Score=44.67  Aligned_cols=91  Identities=14%  Similarity=0.211  Sum_probs=56.8

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEEC
Q psy2960         211 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNC  290 (405)
Q Consensus       211 ~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~  290 (405)
                      .-.|++++|.|= |-+|...++.++.+|++|+++-.    .+.+.-.+..-|.+ +..   .++   .  -...|+++.+
T Consensus        20 ~l~Gk~vvV~GY-G~vG~g~A~~lr~~Ga~V~V~e~----DPi~alqA~~dGf~-v~~---~~~---a--~~~adi~vta   85 (162)
T PF00670_consen   20 MLAGKRVVVIGY-GKVGKGIARALRGLGARVTVTEI----DPIRALQAAMDGFE-VMT---LEE---A--LRDADIFVTA   85 (162)
T ss_dssp             --TTSEEEEE---SHHHHHHHHHHHHTT-EEEEE-S----SHHHHHHHHHTT-E-EE----HHH---H--TTT-SEEEE-
T ss_pred             eeCCCEEEEeCC-CcccHHHHHHHhhCCCEEEEEEC----ChHHHHHhhhcCcE-ecC---HHH---H--HhhCCEEEEC
Confidence            458999999999 99999999999999999988842    23333334444554 322   222   1  1246999999


Q ss_pred             CCchhH--HHHHHhcccCCEEEEEecc
Q psy2960         291 VGGNSA--TNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       291 ~g~~~~--~~~~~~l~~~G~~v~~g~~  315 (405)
                      +|....  .+-++.|+.+-.+..+|..
T Consensus        86 TG~~~vi~~e~~~~mkdgail~n~Gh~  112 (162)
T PF00670_consen   86 TGNKDVITGEHFRQMKDGAILANAGHF  112 (162)
T ss_dssp             SSSSSSB-HHHHHHS-TTEEEEESSSS
T ss_pred             CCCccccCHHHHHHhcCCeEEeccCcC
Confidence            998653  4668888887777776643

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=96.02  E-value=0.019  Score=52.49  Aligned_cols=77  Identities=13%  Similarity=0.172  Sum_probs=49.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-e--C---hhhHHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-F--T---EEELRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~--~---~~d~~~-i~~~t-~g~g~  284 (405)
                      .+.++||.|++|++|...++.+...|++|+.+.++.+..+   +...+++.... +  |   .++... +.+.. ....+
T Consensus         5 ~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~---~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   81 (257)
T PRK07067          5 QGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARAR---LAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGI   81 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHH---HHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4679999999999999999999999999998876644322   22223332211 1  2   222222 22211 12468


Q ss_pred             cEEEECCC
Q psy2960         285 KLALNCVG  292 (405)
Q Consensus       285 Dvvld~~g  292 (405)
                      |+++.+.|
T Consensus        82 d~li~~ag   89 (257)
T PRK07067         82 DILFNNAA   89 (257)
T ss_pred             CEEEECCC
Confidence            99999886

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=96.01  E-value=0.034  Score=50.84  Aligned_cols=79  Identities=11%  Similarity=0.113  Sum_probs=49.1

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH-cCCcE--Ee--Chhh---HHH-Hhhhc-CCCC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADY--VF--TEEE---LRN-ISRDA-SIPK  283 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~-lg~~~--v~--~~~d---~~~-i~~~t-~g~g  283 (405)
                      +++|||.|++|++|.+.+..+...|++++.+.++.+..+...+..+. .+...  .+  |-.+   ... +.+.. ...+
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~   81 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR   81 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999988999998887665433332232222 22111  12  2222   222 22211 1246


Q ss_pred             CcEEEECCC
Q psy2960         284 PKLALNCVG  292 (405)
Q Consensus       284 ~Dvvld~~g  292 (405)
                      +|+++++.|
T Consensus        82 id~vv~~ag   90 (259)
T PRK12384         82 VDLLVYNAG   90 (259)
T ss_pred             CCEEEECCC
Confidence            899999987

>PRK06482 short chain dehydrogenase; Provisional

Probab=95.99  E-value=0.019  Score=53.19  Aligned_cols=76  Identities=18%  Similarity=0.289  Sum_probs=47.8

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE-E--eChhh---HHH-Hhhhc-CCCCCcE
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-V--FTEEE---LRN-ISRDA-SIPKPKL  286 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v--~~~~d---~~~-i~~~t-~g~g~Dv  286 (405)
                      .+|||.||+|++|...++.+...|++|+++.++.+..+   +.....+... +  .|..+   ... +.+.. ...++|+
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~---~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   79 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALD---DLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDV   79 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            57999999999999999988889999999887643321   1112223221 1  23222   222 22211 1356899


Q ss_pred             EEECCCc
Q psy2960         287 ALNCVGG  293 (405)
Q Consensus       287 vld~~g~  293 (405)
                      +|.+.|.
T Consensus        80 vi~~ag~   86 (276)
T PRK06482         80 VVSNAGY   86 (276)
T ss_pred             EEECCCC
Confidence            9999873

>TIGR02415 23BDH acetoin reductases

Probab=95.99  E-value=0.052  Score=49.36  Aligned_cols=79  Identities=14%  Similarity=0.188  Sum_probs=50.2

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH-Hhhhc-CCCCCcE
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDA-SIPKPKL  286 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t-~g~g~Dv  286 (405)
                      .+++|.|++|++|...++.+...|++++.+.++.+..+...+.++..+....   .|-.+   ... +.+.. ....+|+
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~   80 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFDV   80 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            3799999999999999999999999998887664433333334444453221   13222   222 22221 1246899


Q ss_pred             EEECCCc
Q psy2960         287 ALNCVGG  293 (405)
Q Consensus       287 vld~~g~  293 (405)
                      ++++.|.
T Consensus        81 vi~~ag~   87 (254)
T TIGR02415        81 MVNNAGV   87 (254)
T ss_pred             EEECCCc
Confidence            9999874

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=95.99  E-value=0.057  Score=49.45  Aligned_cols=81  Identities=16%  Similarity=0.206  Sum_probs=51.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcc-hHHHHHHHHHcCCcEE---eChhh---HHH-Hhhh-cCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYLKSLGADYV---FTEEE---LRN-ISRD-ASIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~-~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~-t~g~g  283 (405)
                      .|.++||.|++|++|...++.+...|++++.+.++.+. .+...+.++..+....   .|-.+   ... +.+. ....+
T Consensus         6 ~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~   85 (261)
T PRK08936          6 EGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEFGT   85 (261)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999999999998887764432 1222333344443321   23222   222 2221 11246


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|+++++.|.
T Consensus        86 id~lv~~ag~   95 (261)
T PRK08936         86 LDVMINNAGI   95 (261)
T ss_pred             CCEEEECCCC
Confidence            8999999874

>PRK05717 oxidoreductase; Validated

Probab=95.98  E-value=0.038  Score=50.48  Aligned_cols=78  Identities=13%  Similarity=0.120  Sum_probs=49.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eCh---hhHHH-HhhhcC-CCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTE---EELRN-ISRDAS-IPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~---~d~~~-i~~~t~-g~g~  284 (405)
                      .|.+|+|.|++|++|..++..+...|++|+.+.++.++.   .+..+.++....   .|-   ++... +.+... .+.+
T Consensus         9 ~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i   85 (255)
T PRK05717          9 NGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERG---SKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFGRL   85 (255)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHH---HHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            478999999999999999999988999998886554322   222334443221   232   22222 222211 2368


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++.+.|.
T Consensus        86 d~li~~ag~   94 (255)
T PRK05717         86 DALVCNAAI   94 (255)
T ss_pred             CEEEECCCc
Confidence            999998874

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=95.98  E-value=0.11  Score=43.85  Aligned_cols=88  Identities=11%  Similarity=0.079  Sum_probs=56.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      .|.+|+|.|| |.+|..-++.+...|++|.++.  ++..    +.+.+++.-. +..+.+.+    .+-.++|+|+-+++
T Consensus        12 ~~~~vlVvGG-G~va~rka~~Ll~~ga~V~VIs--p~~~----~~l~~l~~i~-~~~~~~~~----~dl~~a~lViaaT~   79 (157)
T PRK06719         12 HNKVVVIIGG-GKIAYRKASGLKDTGAFVTVVS--PEIC----KEMKELPYIT-WKQKTFSN----DDIKDAHLIYAATN   79 (157)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEc--CccC----HHHHhccCcE-EEecccCh----hcCCCceEEEECCC
Confidence            6899999999 9999999988888999988773  2322    2223444211 22222222    11246799999999


Q ss_pred             chhHHHHHHhcccCCEEEEE
Q psy2960         293 GNSATNLLRTLVSKGVMVTY  312 (405)
Q Consensus       293 ~~~~~~~~~~l~~~G~~v~~  312 (405)
                      .+.....+...++.+.++..
T Consensus        80 d~e~N~~i~~~a~~~~~vn~   99 (157)
T PRK06719         80 QHAVNMMVKQAAHDFQWVNV   99 (157)
T ss_pred             CHHHHHHHHHHHHHCCcEEE
Confidence            98887665444433334443

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=95.97  E-value=0.046  Score=50.63  Aligned_cols=106  Identities=20%  Similarity=0.214  Sum_probs=61.8

Q ss_pred             HHHHHHhhc--CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCcchHHHHHHHHHcCCc-EEeChhhHHHHh
Q psy2960         201 AYRMLKDYN--SLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGAD-YVFTEEELRNIS  276 (405)
Q Consensus       201 a~~al~~~~--~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~~~~~~~~~~~~lg~~-~v~~~~d~~~i~  276 (405)
                      -+.+|.+..  ...+|++|+|.|+ ||.+.+++.-++..|+. ++++-|+.++.++..+.+.+.+.. ......+.+.  
T Consensus       111 ~~~~L~~~~~~~~~~~~~vlilGA-GGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~--  187 (283)
T COG0169         111 FLRALKEFGLPVDVTGKRVLILGA-GGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEG--  187 (283)
T ss_pred             HHHHHHhcCCCcccCCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccccccccccccccc--
Confidence            344454422  2346899999999 99999999999999975 556656555544444444444431 1111111110  


Q ss_pred             hhcCCCCCcEEEECCCchhHH------HHHHhcccCCEEEEEe
Q psy2960         277 RDASIPKPKLALNCVGGNSAT------NLLRTLVSKGVMVTYG  313 (405)
Q Consensus       277 ~~t~g~g~Dvvld~~g~~~~~------~~~~~l~~~G~~v~~g  313 (405)
                          ...+|++|||++.....      ....++++.-.+..+-
T Consensus       188 ----~~~~dliINaTp~Gm~~~~~~~~~~~~~l~~~~~v~D~v  226 (283)
T COG0169         188 ----LEEADLLINATPVGMAGPEGDSPVPAELLPKGAIVYDVV  226 (283)
T ss_pred             ----ccccCEEEECCCCCCCCCCCCCCCcHHhcCcCCEEEEec
Confidence                11489999998632111      0145666666666654

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=95.97  E-value=0.054  Score=48.96  Aligned_cols=79  Identities=9%  Similarity=0.078  Sum_probs=49.7

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEe-cCCcchHHHHHHHHHcCCcEE---eChh---hHHH-Hhhhc-CCCCCc
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIV-RNRDDIDKLKSYLKSLGADYV---FTEE---ELRN-ISRDA-SIPKPK  285 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~-~~~~~~~~~~~~~~~lg~~~v---~~~~---d~~~-i~~~t-~g~g~D  285 (405)
                      .++||.|++|++|...+..+...|++|+++. ++.++.++........+....   .|-.   +... +.+.. ...++|
T Consensus         2 ~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~id   81 (247)
T PRK09730          2 AIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEPLA   81 (247)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCCCCC
Confidence            4799999999999999999989999987754 333332333333444443221   2322   2333 33321 245789


Q ss_pred             EEEECCCc
Q psy2960         286 LALNCVGG  293 (405)
Q Consensus       286 vvld~~g~  293 (405)
                      +++.+.|.
T Consensus        82 ~vi~~ag~   89 (247)
T PRK09730         82 ALVNNAGI   89 (247)
T ss_pred             EEEECCCC
Confidence            99999984

>PRK07201 short chain dehydrogenase; Provisional

Probab=95.96  E-value=0.035  Score=58.28  Aligned_cols=80  Identities=19%  Similarity=0.254  Sum_probs=53.0

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eCh---hhHHH-Hhhhc-CCCCCc
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTE---EELRN-ISRDA-SIPKPK  285 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~---~d~~~-i~~~t-~g~g~D  285 (405)
                      |.+++|.||+|++|...+..+...|++|+.+.++.+..++..+.+...+....   .|-   ++... +.+.. ..+++|
T Consensus       371 ~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id  450 (657)
T PRK07201        371 GKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEHGHVD  450 (657)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCCCC
Confidence            67999999999999999998888999999998775544443444444443322   132   22333 22221 124689


Q ss_pred             EEEECCCc
Q psy2960         286 LALNCVGG  293 (405)
Q Consensus       286 vvld~~g~  293 (405)
                      +++++.|.
T Consensus       451 ~li~~Ag~  458 (657)
T PRK07201        451 YLVNNAGR  458 (657)
T ss_pred             EEEECCCC
Confidence            99999983

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=95.95  E-value=0.086  Score=41.96  Aligned_cols=103  Identities=22%  Similarity=0.336  Sum_probs=61.3

Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcC-CcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHH-HhhhcCCCC
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRN-ISRDASIPK  283 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G-~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~-i~~~t~g~g  283 (405)
                      ....+.++++|+-.|+  |.|..+..+++..+ .+++++-.+.+..+...+.+..++...+ +-..+... ....  ...
T Consensus        13 ~~~~~~~~~~vldlG~--G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~   88 (124)
T TIGR02469        13 SKLRLRPGDVLWDIGA--GSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDS--LPE   88 (124)
T ss_pred             HHcCCCCCCEEEEeCC--CCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhh--cCC
Confidence            3356778899999998  44999999999875 4666664333333332333444554322 11112111 1111  247


Q ss_pred             CcEEEECCCch----hHHHHHHhcccCCEEEEEe
Q psy2960         284 PKLALNCVGGN----SATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       284 ~Dvvld~~g~~----~~~~~~~~l~~~G~~v~~g  313 (405)
                      +|+|+-..+..    .+..+.+.|+++|+++.-.
T Consensus        89 ~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        89 PDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             CCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence            99999765432    3345789999999998753

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK05855 short chain dehydrogenase; Validated

Probab=95.92  E-value=0.041  Score=56.63  Aligned_cols=81  Identities=15%  Similarity=0.207  Sum_probs=53.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t-~g~g~  284 (405)
                      .+.++||.||+|++|.+.++.+...|++|+.+.++.++.++..+..++.|....   .|-.|   ... +.+.. ..+.+
T Consensus       314 ~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i  393 (582)
T PRK05855        314 SGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHGVP  393 (582)
T ss_pred             CCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            467899999999999999999989999998888765544444444445554221   23222   222 22221 13468


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus       394 d~lv~~Ag~  402 (582)
T PRK05855        394 DIVVNNAGI  402 (582)
T ss_pred             cEEEECCcc
Confidence            999999974

>PRK08264 short chain dehydrogenase; Validated

Probab=95.90  E-value=0.043  Score=49.39  Aligned_cols=72  Identities=19%  Similarity=0.293  Sum_probs=47.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHcCCc-EE--eChhh---HHHHhhhcCCCCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGAD-YV--FTEEE---LRNISRDASIPKPK  285 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~lg~~-~v--~~~~d---~~~i~~~t~g~g~D  285 (405)
                      .+.+|+|.||+|++|...++.+...|+ +|+.+.++.++    .+.   .+.. .+  .|..+   ...+.+.  -..+|
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~----~~~---~~~~~~~~~~D~~~~~~~~~~~~~--~~~id   75 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPES----VTD---LGPRVVPLQLDVTDPASVAAAAEA--ASDVT   75 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhh----hhh---cCCceEEEEecCCCHHHHHHHHHh--cCCCC
Confidence            568999999999999999999999999 88878765432    111   2222 11  23222   2222222  23589


Q ss_pred             EEEECCCc
Q psy2960         286 LALNCVGG  293 (405)
Q Consensus       286 vvld~~g~  293 (405)
                      +||.+.|.
T Consensus        76 ~vi~~ag~   83 (238)
T PRK08264         76 ILVNNAGI   83 (238)
T ss_pred             EEEECCCc
Confidence            99999886

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=95.89  E-value=0.044  Score=51.91  Aligned_cols=80  Identities=15%  Similarity=0.057  Sum_probs=48.8

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcC-CcEEEEecCCcchHHHHHHHHHcCCc-EE--eChhh---HHH-Hhhhc-CCCCC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGAD-YV--FTEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G-~~v~~~~~~~~~~~~~~~~~~~lg~~-~v--~~~~d---~~~-i~~~t-~g~g~  284 (405)
                      +.+++|.|+++|+|.+.+..+...| ++++.+.++.++.++..+.+...+.. .+  .|-.+   ... +.+.. ..+++
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~i   82 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGRPL   82 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence            6789999999999999998888889 89888876654322222222111211 11  23222   222 22221 13469


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |++|++.|.
T Consensus        83 D~lI~nAG~   91 (314)
T TIGR01289        83 DALVCNAAV   91 (314)
T ss_pred             CEEEECCCc
Confidence            999998873

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=95.88  E-value=0.082  Score=51.95  Aligned_cols=77  Identities=16%  Similarity=0.118  Sum_probs=51.1

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECC
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                      -.|.+|||.|+ |++|.+++..+...|+..+.+++....  ...+++..++...+...++...   .  -..+|+||+|+
T Consensus       179 l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~--ra~~La~~~~~~~~~~~~~l~~---~--l~~aDiVI~aT  250 (414)
T PRK13940        179 ISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIE--KAQKITSAFRNASAHYLSELPQ---L--IKKADIIIAAV  250 (414)
T ss_pred             ccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHH--HHHHHHHHhcCCeEecHHHHHH---H--hccCCEEEECc
Confidence            36789999999 999999999999999876665543222  2234455565223444444333   1  13479999999


Q ss_pred             CchhH
Q psy2960         292 GGNSA  296 (405)
Q Consensus       292 g~~~~  296 (405)
                      +.+..
T Consensus       251 ~a~~~  255 (414)
T PRK13940        251 NVLEY  255 (414)
T ss_pred             CCCCe
Confidence            98654

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=95.88  E-value=0.11  Score=49.69  Aligned_cols=77  Identities=10%  Similarity=0.076  Sum_probs=46.6

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC---cEE-eChhhHHHHhhhcCCCCCcEEEECC
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA---DYV-FTEEELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~---~~v-~~~~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                      +|||.||+|.+|...+..+...|.+|+++.+..+..........+++.   ..+ .|-.|...+.+.....++|+|+++.
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vvh~a   81 (338)
T PRK10675          2 RVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVIHFA   81 (338)
T ss_pred             eEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEEECC
Confidence            699999999999999998888899998875432221222222223322   111 2333333233322234799999987


Q ss_pred             C
Q psy2960         292 G  292 (405)
Q Consensus       292 g  292 (405)
                      +
T Consensus        82 ~   82 (338)
T PRK10675         82 G   82 (338)
T ss_pred             c
Confidence            6

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=95.88  E-value=0.068  Score=49.85  Aligned_cols=95  Identities=14%  Similarity=0.089  Sum_probs=52.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEe-cCCcchHHHHHHHHH-cCCcEEeChhhHHHHhhhcCCCCCcEEEEC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIV-RNRDDIDKLKSYLKS-LGADYVFTEEELRNISRDASIPKPKLALNC  290 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~-~~~~~~~~~~~~~~~-lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~  290 (405)
                      .+.+|+|.|+ ||+|.+++..+...|++.+.++ ++.++.+...+.+.. .+...+...++..+   .  -..+|+||+|
T Consensus       126 ~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~---~--~~~aDiVIna  199 (284)
T PRK12549        126 SLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAA---A--LAAADGLVHA  199 (284)
T ss_pred             cCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHh---h--hCCCCEEEEC
Confidence            5689999999 9999999999999999655555 333332222222211 12122222222221   1  1357999999


Q ss_pred             CCchh-----HHHHHHhcccCCEEEEEe
Q psy2960         291 VGGNS-----ATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       291 ~g~~~-----~~~~~~~l~~~G~~v~~g  313 (405)
                      +....     ..-....++++..++.+-
T Consensus       200 Tp~Gm~~~~~~~~~~~~l~~~~~v~Div  227 (284)
T PRK12549        200 TPTGMAKHPGLPLPAELLRPGLWVADIV  227 (284)
T ss_pred             CcCCCCCCCCCCCCHHHcCCCcEEEEee
Confidence            64211     000124456655555554

>PRK06398 aldose dehydrogenase; Validated

Probab=95.87  E-value=0.013  Score=53.68  Aligned_cols=36  Identities=22%  Similarity=0.319  Sum_probs=32.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      .|+++||.|++|++|.+.+..+...|++|+.+.++.
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~   40 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKE   40 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc
Confidence            478999999999999999999999999999887654

>PRK12744 short chain dehydrogenase; Provisional

Probab=95.87  E-value=0.065  Score=48.95  Aligned_cols=81  Identities=21%  Similarity=0.300  Sum_probs=49.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcc----hHHHHHHHHHcCCcE-E--eChh---hHHH-Hhhhc-C
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD----IDKLKSYLKSLGADY-V--FTEE---ELRN-ISRDA-S  280 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~----~~~~~~~~~~lg~~~-v--~~~~---d~~~-i~~~t-~  280 (405)
                      .+.++||.|++|++|.+.++.+...|++++.++++.+.    .+...+.+...+.+. .  .|-.   +... +.+.. .
T Consensus         7 ~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   86 (257)
T PRK12744          7 KGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKAA   86 (257)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHHh
Confidence            46899999999999999999999999997777643221    122222333344332 1  2322   2222 22211 1


Q ss_pred             CCCCcEEEECCCc
Q psy2960         281 IPKPKLALNCVGG  293 (405)
Q Consensus       281 g~g~Dvvld~~g~  293 (405)
                      .+++|++|++.|.
T Consensus        87 ~~~id~li~~ag~   99 (257)
T PRK12744         87 FGRPDIAINTVGK   99 (257)
T ss_pred             hCCCCEEEECCcc
Confidence            2468999999884

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=95.86  E-value=0.17  Score=40.97  Aligned_cols=94  Identities=15%  Similarity=0.310  Sum_probs=63.0

Q ss_pred             EEEeCCCcHHHHHHHHHHHHcC--CcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HH-------------------
Q psy2960         217 VIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LR-------------------  273 (405)
Q Consensus       217 VLI~ga~G~vG~~aiqla~~~G--~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~-------------------  273 (405)
                      |.|.|++|.+|..+..+.+...  .++++.+... ..+...+.++++....+.-.++  ..                   
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~-n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~   79 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGS-NIEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLSGP   79 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESS-THHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESH
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCC-CHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeCh
Confidence            6799999999999999999997  7888887643 4577788889998887753221  11                   


Q ss_pred             H-HhhhcCCCCCcEEEECCCc-hhHHHHHHhcccCCEEEE
Q psy2960         274 N-ISRDASIPKPKLALNCVGG-NSATNLLRTLVSKGVMVT  311 (405)
Q Consensus       274 ~-i~~~t~g~g~Dvvld~~g~-~~~~~~~~~l~~~G~~v~  311 (405)
                      + +.+......+|+|++++.+ .-+...+..+..+-++..
T Consensus        80 ~~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~gk~iaL  119 (129)
T PF02670_consen   80 EGLEELAEEPEVDIVVNAIVGFAGLKPTLAAIKAGKDIAL  119 (129)
T ss_dssp             HHHHHHHTHTT-SEEEE--SSGGGHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHhcCCCCCEEEEeCcccchHHHHHHHHHCCCeEEE
Confidence            1 2233333578999997755 455566777776655543

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>PRK07577 short chain dehydrogenase; Provisional

Probab=95.85  E-value=0.018  Score=51.76  Aligned_cols=72  Identities=19%  Similarity=0.249  Sum_probs=48.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc-EEeCh---hhHHH-HhhhcCCCCCcEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YVFTE---EELRN-ISRDASIPKPKLA  287 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~-~v~~~---~d~~~-i~~~t~g~g~Dvv  287 (405)
                      .+.++||.|++|++|...++.+...|++|+.+.++.+.         ..... ...|.   ++... +.+.....++|++
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~---------~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~v   72 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAID---------DFPGELFACDLADIEQTAATLAQINEIHPVDAI   72 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCccc---------ccCceEEEeeCCCHHHHHHHHHHHHHhCCCcEE
Confidence            36789999999999999999999999999998866432         11111 11232   22333 3333333368999


Q ss_pred             EECCCc
Q psy2960         288 LNCVGG  293 (405)
Q Consensus       288 ld~~g~  293 (405)
                      |.+.|.
T Consensus        73 i~~ag~   78 (234)
T PRK07577         73 VNNVGI   78 (234)
T ss_pred             EECCCC
Confidence            999874

>PRK14967 putative methyltransferase; Provisional

Probab=95.83  E-value=0.13  Score=46.14  Aligned_cols=99  Identities=12%  Similarity=0.115  Sum_probs=57.0

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEE
Q psy2960         209 NSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLA  287 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvv  287 (405)
                      ..++++++||-.|+ |. |..++.+++. |+ +++++-.+.+..+...+.+...+.+..+...|+..   ......+|+|
T Consensus        32 ~~~~~~~~vLDlGc-G~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~---~~~~~~fD~V  105 (223)
T PRK14967         32 EGLGPGRRVLDLCT-GS-GALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWAR---AVEFRPFDVV  105 (223)
T ss_pred             cccCCCCeEEEecC-CH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhh---hccCCCeeEE
Confidence            46788999999998 44 8888888875 66 55555333222222222333344432222233322   1123578999


Q ss_pred             EECCCc----------------------------hhHHHHHHhcccCCEEEEEe
Q psy2960         288 LNCVGG----------------------------NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       288 ld~~g~----------------------------~~~~~~~~~l~~~G~~v~~g  313 (405)
                      +...+-                            ..+..+.+.|+++|+++.+-
T Consensus       106 i~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~  159 (223)
T PRK14967        106 VSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQ  159 (223)
T ss_pred             EECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            865210                            01234678999999998764

>PRK06953 short chain dehydrogenase; Provisional

Probab=95.82  E-value=0.048  Score=48.67  Aligned_cols=75  Identities=19%  Similarity=0.263  Sum_probs=49.1

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE-EeChhh---HHHHhhhcCCCCCcEEEEC
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-VFTEEE---LRNISRDASIPKPKLALNC  290 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v~~~~d---~~~i~~~t~g~g~Dvvld~  290 (405)
                      ++++|+|++|++|...++.+...|++++.+.++.+.    .+.+...+... ..|-.+   ...+.+...+.++|+++.+
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~----~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~   77 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAA----LAALQALGAEALALDVADPASVAGLAWKLDGEALDAAVYV   77 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHH----HHHHHhccceEEEecCCCHHHHHHHHHHhcCCCCCEEEEC
Confidence            479999999999999999888889999888766433    23334444432 223222   2222222234579999998


Q ss_pred             CCc
Q psy2960         291 VGG  293 (405)
Q Consensus       291 ~g~  293 (405)
                      .|.
T Consensus        78 ag~   80 (222)
T PRK06953         78 AGV   80 (222)
T ss_pred             CCc
Confidence            874

>KOG1209|consensus

Probab=95.81  E-value=0.069  Score=46.56  Aligned_cols=99  Identities=16%  Similarity=0.204  Sum_probs=64.3

Q ss_pred             CCCEEEEeCC-CcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE-EeC---hhh---HHH-HhhhcCCCC
Q psy2960         213 PGDVVIQNGA-NSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-VFT---EEE---LRN-ISRDASIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga-~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v~~---~~d---~~~-i~~~t~g~g  283 (405)
                      ....|||.|+ +||+|.+.+.-....|+.|++++++.+...   ++..+.|... =+|   .++   +.. +++.+ .+.
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~---~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~-~Gk   81 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMA---QLAIQFGLKPYKLDVSKPEEVVTVSGEVRANP-DGK   81 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHh---hHHHhhCCeeEEeccCChHHHHHHHHHHhhCC-CCc
Confidence            3467999987 589999998888889999999998776532   2333555321 122   222   233 55443 456


Q ss_pred             CcEEEECCCchh-------------------------HHHH--HHhcccCCEEEEEecc
Q psy2960         284 PKLALNCVGGNS-------------------------ATNL--LRTLVSKGVMVTYGGM  315 (405)
Q Consensus       284 ~Dvvld~~g~~~-------------------------~~~~--~~~l~~~G~~v~~g~~  315 (405)
                      .|+.+|..|.+.                         ...+  -.+.+..|+|+.+|+.
T Consensus        82 ld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl  140 (289)
T KOG1209|consen   82 LDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSL  140 (289)
T ss_pred             eEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecce
Confidence            899999877431                         1112  2345788999999875

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.78  E-value=0.02  Score=48.95  Aligned_cols=97  Identities=18%  Similarity=0.238  Sum_probs=61.0

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeC-------------------hhhHHH
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT-------------------EEELRN  274 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~-------------------~~d~~~  274 (405)
                      ..+|+|.|+ |.+|+.|+.+++.+|+++++.-    ....+++....+++..+..                   ......
T Consensus        20 p~~vvv~G~-G~vg~gA~~~~~~lGa~v~~~d----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (168)
T PF01262_consen   20 PAKVVVTGA-GRVGQGAAEIAKGLGAEVVVPD----ERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYES   94 (168)
T ss_dssp             T-EEEEEST-SHHHHHHHHHHHHTT-EEEEEE----SSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHH
T ss_pred             CeEEEEECC-CHHHHHHHHHHhHCCCEEEecc----CCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHH
Confidence            378999998 9999999999999999998885    3344566666777654432                   111111


Q ss_pred             -HhhhcCCCCCcEEEECC---Cc--hh--HHHHHHhcccCCEEEEEeccCC
Q psy2960         275 -ISRDASIPKPKLALNCV---GG--NS--ATNLLRTLVSKGVMVTYGGMSR  317 (405)
Q Consensus       275 -i~~~t~g~g~Dvvld~~---g~--~~--~~~~~~~l~~~G~~v~~g~~~~  317 (405)
                       +.+..  ..+|+||.+.   +.  +.  ..+.++.|+++..++.+....+
T Consensus        95 ~f~~~i--~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~D~g  143 (168)
T PF01262_consen   95 NFAEFI--APADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISCDQG  143 (168)
T ss_dssp             HHHHHH--HH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTGGGT
T ss_pred             HHHHHH--hhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEecCC
Confidence             22221  2459988533   21  21  2456888999888988864433

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.78  E-value=0.065  Score=48.29  Aligned_cols=80  Identities=16%  Similarity=0.260  Sum_probs=49.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHH-HHHHHHHcCCcE-E--eChhh---HHH-Hhhhc-CCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDK-LKSYLKSLGADY-V--FTEEE---LRN-ISRDA-SIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~-~~~~~~~lg~~~-v--~~~~d---~~~-i~~~t-~g~g  283 (405)
                      +..+|||.|++|++|...++.+...|+++++++++.++... ........+... +  .|..+   +.. +.+.. ...+
T Consensus         5 ~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~   84 (249)
T PRK12825          5 MGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVERFGR   84 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHHcCC
Confidence            35689999999999999999999999998887766543221 222223333321 1  23222   222 22211 1247


Q ss_pred             CcEEEECCC
Q psy2960         284 PKLALNCVG  292 (405)
Q Consensus       284 ~Dvvld~~g  292 (405)
                      +|+||.+.|
T Consensus        85 id~vi~~ag   93 (249)
T PRK12825         85 IDILVNNAG   93 (249)
T ss_pred             CCEEEECCc
Confidence            899999987

>PRK07402 precorrin-6B methylase; Provisional

Probab=95.77  E-value=0.2  Score=43.85  Aligned_cols=106  Identities=18%  Similarity=0.241  Sum_probs=59.5

Q ss_pred             HHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHH-HhhhcC
Q psy2960         204 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRN-ISRDAS  280 (405)
Q Consensus       204 al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~-i~~~t~  280 (405)
                      .+.....++++++||=.|+  |.|..++.+++.. +.+++++-.+.+..+...+.+..++.+.+ +-..|..+ +.... 
T Consensus        31 ~l~~~l~~~~~~~VLDiG~--G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~-  107 (196)
T PRK07402         31 LLISQLRLEPDSVLWDIGA--GTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLA-  107 (196)
T ss_pred             HHHHhcCCCCCCEEEEeCC--CCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCC-
Confidence            3444567889999988887  5577777888765 56777775444333333344445665432 11122222 22211 


Q ss_pred             CCCCcE-EEECCCc--hhHHHHHHhcccCCEEEEEe
Q psy2960         281 IPKPKL-ALNCVGG--NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       281 g~g~Dv-vld~~g~--~~~~~~~~~l~~~G~~v~~g  313 (405)
                       ..+|. +++....  ..+..+.+.|+++|+++...
T Consensus       108 -~~~d~v~~~~~~~~~~~l~~~~~~LkpgG~li~~~  142 (196)
T PRK07402        108 -PAPDRVCIEGGRPIKEILQAVWQYLKPGGRLVATA  142 (196)
T ss_pred             -CCCCEEEEECCcCHHHHHHHHHHhcCCCeEEEEEe
Confidence             12344 4443221  33456678999999998764

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=95.76  E-value=0.074  Score=48.21  Aligned_cols=78  Identities=13%  Similarity=0.152  Sum_probs=48.1

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc-chHHHHHHHHHcCCcEEe---Ch---hhHHH-Hhhhc-CCCCCc
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD-DIDKLKSYLKSLGADYVF---TE---EELRN-ISRDA-SIPKPK  285 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~-~~~~~~~~~~~lg~~~v~---~~---~d~~~-i~~~t-~g~g~D  285 (405)
                      ++|||.|++|++|...++.....|++++.+.++.. ..+...+.++..+....+   |-   ++... +.+.. ....+|
T Consensus         3 k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   82 (248)
T PRK06947          3 KVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFGRLD   82 (248)
T ss_pred             cEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcCCCC
Confidence            57999999999999999999999999887654332 222223333444433221   22   22222 22221 124689


Q ss_pred             EEEECCC
Q psy2960         286 LALNCVG  292 (405)
Q Consensus       286 vvld~~g  292 (405)
                      ++|.+.|
T Consensus        83 ~li~~ag   89 (248)
T PRK06947         83 ALVNNAG   89 (248)
T ss_pred             EEEECCc
Confidence            9999987

>PRK04148 hypothetical protein; Provisional

Probab=95.71  E-value=0.06  Score=43.82  Aligned_cols=88  Identities=14%  Similarity=0.058  Sum_probs=55.8

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEEC
Q psy2960         211 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNC  290 (405)
Q Consensus       211 ~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~  290 (405)
                      -.++.++++.|. | .|...+..+...|.+|+++-.    .+...+.+++.+.+.+.+. =+..-.++  -.++|+|..+
T Consensus        14 ~~~~~kileIG~-G-fG~~vA~~L~~~G~~ViaIDi----~~~aV~~a~~~~~~~v~dD-lf~p~~~~--y~~a~liysi   84 (134)
T PRK04148         14 KGKNKKIVELGI-G-FYFKVAKKLKESGFDVIVIDI----NEKAVEKAKKLGLNAFVDD-LFNPNLEI--YKNAKLIYSI   84 (134)
T ss_pred             cccCCEEEEEEe-c-CCHHHHHHHHHCCCEEEEEEC----CHHHHHHHHHhCCeEEECc-CCCCCHHH--HhcCCEEEEe
Confidence            345789999999 6 887666666678999999953    3445777888877655431 01110001  2467888888


Q ss_pred             CCchhHHHH-HHhcccCC
Q psy2960         291 VGGNSATNL-LRTLVSKG  307 (405)
Q Consensus       291 ~g~~~~~~~-~~~l~~~G  307 (405)
                      -....++.. ++..++-|
T Consensus        85 rpp~el~~~~~~la~~~~  102 (134)
T PRK04148         85 RPPRDLQPFILELAKKIN  102 (134)
T ss_pred             CCCHHHHHHHHHHHHHcC
Confidence            777666654 45544444

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.71  E-value=0.078  Score=48.27  Aligned_cols=79  Identities=15%  Similarity=0.229  Sum_probs=49.0

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcc-hHHHHHHHHHcCCcE-Ee--Chhh---HHH-HhhhcC-CCCCc
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYLKSLGADY-VF--TEEE---LRN-ISRDAS-IPKPK  285 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~-~~~~~~~~~~lg~~~-v~--~~~d---~~~-i~~~t~-g~g~D  285 (405)
                      .++||.|++|++|...+..+...|++++.+.++.+. .+...+.++..+... ++  |-.+   ... +.+... .+.+|
T Consensus         3 k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   82 (256)
T PRK12745          3 PVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGRID   82 (256)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCCCC
Confidence            579999999999999999999999999888765432 222233333334321 22  3222   222 222211 24689


Q ss_pred             EEEECCCc
Q psy2960         286 LALNCVGG  293 (405)
Q Consensus       286 vvld~~g~  293 (405)
                      +++.+.|.
T Consensus        83 ~vi~~ag~   90 (256)
T PRK12745         83 CLVNNAGV   90 (256)
T ss_pred             EEEECCcc
Confidence            99999874

>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B

Probab=95.71  E-value=0.15  Score=46.06  Aligned_cols=161  Identities=16%  Similarity=0.164  Sum_probs=91.5

Q ss_pred             CCC--cHHHHHHHHHHHHcCCcEEEEecCCcchHH-HHHHHHHcCCcEEe--Ch---hhHHH----HhhhcCCCCCcEEE
Q psy2960         221 GAN--SACGQNVIQIARHWGLKTINIVRNRDDIDK-LKSYLKSLGADYVF--TE---EELRN----ISRDASIPKPKLAL  288 (405)
Q Consensus       221 ga~--G~vG~~aiqla~~~G~~v~~~~~~~~~~~~-~~~~~~~lg~~~v~--~~---~d~~~----i~~~t~g~g~Dvvl  288 (405)
                      |++  +|+|.+.++-+...|++|+.+.++.++.+. ..+...+.+.+ ++  |-   ++...    +.+.. ++.+|+++
T Consensus         1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~-~~~~D~~~~~~v~~~~~~~~~~~-~g~iD~lV   78 (241)
T PF13561_consen    1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAE-VIQCDLSDEESVEALFDEAVERF-GGRIDILV   78 (241)
T ss_dssp             STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSE-EEESCTTSHHHHHHHHHHHHHHH-CSSESEEE
T ss_pred             CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCc-eEeecCcchHHHHHHHHHHHhhc-CCCeEEEE
Confidence            455  899999999999999999999887665322 33455566755 43  32   22222    22222 26799999


Q ss_pred             ECCCch------------------------------hHHHHHHhcccCCEEEEEeccCCCCcccCc--------------
Q psy2960         289 NCVGGN------------------------------SATNLLRTLVSKGVMVTYGGMSREPVQIPT--------------  324 (405)
Q Consensus       289 d~~g~~------------------------------~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~--------------  324 (405)
                      ++.|..                              ....++..++++|.++.++...........              
T Consensus        79 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~~~~~~~~y~~sKaal~~l~  158 (241)
T PF13561_consen   79 NNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQRPMPGYSAYSASKAALEGLT  158 (241)
T ss_dssp             EEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTSBSTTTHHHHHHHHHHHHHH
T ss_pred             ecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhcccCccchhhHHHHHHHHHHH
Confidence            876421                              012334577889999999764321111000              


Q ss_pred             ----ccccc-cCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHHh
Q psy2960         325 ----SAFIF-KDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTM  389 (405)
Q Consensus       325 ----~~~~~-k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~  389 (405)
                          .++-. +++++-.+..+.......  .. ....+++.+.+.+   ..+..+....+|+.++..+|.
T Consensus       159 r~lA~el~~~~gIrVN~V~pG~i~t~~~--~~-~~~~~~~~~~~~~---~~pl~r~~~~~evA~~v~fL~  222 (241)
T PF13561_consen  159 RSLAKELAPKKGIRVNAVSPGPIETPMT--ER-IPGNEEFLEELKK---RIPLGRLGTPEEVANAVLFLA  222 (241)
T ss_dssp             HHHHHHHGGHGTEEEEEEEESSBSSHHH--HH-HHTHHHHHHHHHH---HSTTSSHBEHHHHHHHHHHHH
T ss_pred             HHHHHHhccccCeeeeeecccceeccch--hc-cccccchhhhhhh---hhccCCCcCHHHHHHHHHHHh
Confidence                22334 678888776544321110  00 1112333333332   122234458899999999887

...

>PRK06123 short chain dehydrogenase; Provisional

Probab=95.71  E-value=0.077  Score=48.06  Aligned_cols=80  Identities=14%  Similarity=0.163  Sum_probs=48.9

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC-cchHHHHHHHHHcCCcEEe---Chhh---HHH-Hhhhc-CCCCC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR-DDIDKLKSYLKSLGADYVF---TEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~-~~~~~~~~~~~~lg~~~v~---~~~d---~~~-i~~~t-~g~g~  284 (405)
                      +.++||.|++|++|...++.....|++++.+.+++ +..+...+.++..+....+   |-.+   ... +.+.. ..+.+
T Consensus         2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   81 (248)
T PRK06123          2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGRL   81 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence            46899999999999999998888999887665332 2222233334444543222   3222   222 22221 12468


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |++|.+.|.
T Consensus        82 d~li~~ag~   90 (248)
T PRK06123         82 DALVNNAGI   90 (248)
T ss_pred             CEEEECCCC
Confidence            999999874

>PRK12827 short chain dehydrogenase; Provisional

Probab=95.69  E-value=0.066  Score=48.38  Aligned_cols=81  Identities=12%  Similarity=0.154  Sum_probs=48.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcch----HHHHHHHHHcCCcEE-e--Chhh---HHH-Hhhh-cC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDI----DKLKSYLKSLGADYV-F--TEEE---LRN-ISRD-AS  280 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~----~~~~~~~~~lg~~~v-~--~~~d---~~~-i~~~-t~  280 (405)
                      .+.+++|.|++|++|...+..+...|++++.+.+.....    +...+.....+.... +  |..+   ... +.+. ..
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   84 (249)
T PRK12827          5 DSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVEE   84 (249)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            467899999999999999998889999988865422211    112223333343321 1  2222   222 2211 11


Q ss_pred             CCCCcEEEECCCc
Q psy2960         281 IPKPKLALNCVGG  293 (405)
Q Consensus       281 g~g~Dvvld~~g~  293 (405)
                      ..++|.+|.+.|.
T Consensus        85 ~~~~d~vi~~ag~   97 (249)
T PRK12827         85 FGRLDILVNNAGI   97 (249)
T ss_pred             hCCCCEEEECCCC
Confidence            2468999999874

>PRK05884 short chain dehydrogenase; Provisional

Probab=95.67  E-value=0.078  Score=47.44  Aligned_cols=72  Identities=19%  Similarity=0.217  Sum_probs=47.2

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChh---hHHH-HhhhcCCCCCcEEEEC
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEE---ELRN-ISRDASIPKPKLALNC  290 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~---d~~~-i~~~t~g~g~Dvvld~  290 (405)
                      +++|.||+|++|.+.++.+...|++++.+.++.++.   .+...+++...+ .|-.   +... +.+..  ..+|+++++
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~---~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~--~~id~lv~~   76 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDL---EVAAKELDVDAIVCDNTDPASLEEARGLFP--HHLDTIVNV   76 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHhccCcEEecCCCCHHHHHHHHHHHh--hcCcEEEEC
Confidence            589999999999999999988999999887654322   223334444333 2322   2333 33332  258999998


Q ss_pred             CC
Q psy2960         291 VG  292 (405)
Q Consensus       291 ~g  292 (405)
                      .|
T Consensus        77 ag   78 (223)
T PRK05884         77 PA   78 (223)
T ss_pred             CC
Confidence            65

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=95.67  E-value=0.034  Score=50.18  Aligned_cols=78  Identities=13%  Similarity=0.207  Sum_probs=47.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE-E--eCh---hhHHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-V--FTE---EELRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v--~~~---~d~~~-i~~~t-~g~g~  284 (405)
                      ++.++||.|++|++|...+..+...|+.++...++.++.   .+....++... +  .|-   ++... +.+.. ...++
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   81 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKL---EALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGV   81 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHH---HHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            468999999999999999999888999777665443322   22223334322 1  122   22222 22111 12468


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++.+.|.
T Consensus        82 d~vi~~ag~   90 (245)
T PRK12936         82 DILVNNAGI   90 (245)
T ss_pred             CEEEECCCC
Confidence            999999873

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.66  E-value=0.058  Score=49.41  Aligned_cols=80  Identities=16%  Similarity=0.175  Sum_probs=49.0

Q ss_pred             CCCEEEEeCC--CcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc--EE-eCh---hhHHH-Hhhhc-CCC
Q psy2960         213 PGDVVIQNGA--NSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YV-FTE---EELRN-ISRDA-SIP  282 (405)
Q Consensus       213 ~g~~VLI~ga--~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~--~v-~~~---~d~~~-i~~~t-~g~  282 (405)
                      .|++++|.|+  ++|+|.+.++.+...|++|+.+.++... +...+...+++..  .+ .|-   ++... +.+.. ...
T Consensus         6 ~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~-~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~g   84 (256)
T PRK07889          6 EGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRAL-RLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREHVD   84 (256)
T ss_pred             cCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccch-hHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            5789999999  7999999999988899999887654311 1112223334321  11 232   22222 22221 124


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      ++|+++++.|.
T Consensus        85 ~iD~li~nAG~   95 (256)
T PRK07889         85 GLDGVVHSIGF   95 (256)
T ss_pred             CCcEEEEcccc
Confidence            69999998874

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=95.65  E-value=0.071  Score=51.35  Aligned_cols=80  Identities=16%  Similarity=0.227  Sum_probs=50.0

Q ss_pred             CCCCEEEEeCCCcHHHHH--HHHHHHHcCCcEEEEecCCcchH------------HHHHHHHHcCCcEE-e--Ch---hh
Q psy2960         212 SPGDVVIQNGANSACGQN--VIQIARHWGLKTINIVRNRDDID------------KLKSYLKSLGADYV-F--TE---EE  271 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~--aiqla~~~G~~v~~~~~~~~~~~------------~~~~~~~~lg~~~v-~--~~---~d  271 (405)
                      .-|+++||.|+++++|++  .++.+ ..|++++++....+..+            ...+.+.+.|.... +  |-   ++
T Consensus        39 ~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~  117 (398)
T PRK13656         39 NGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEI  117 (398)
T ss_pred             CCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHH
Confidence            446899999999999999  45555 88999888763322211            12344556675422 2  21   22


Q ss_pred             HHH----HhhhcCCCCCcEEEECCCch
Q psy2960         272 LRN----ISRDASIPKPKLALNCVGGN  294 (405)
Q Consensus       272 ~~~----i~~~t~g~g~Dvvld~~g~~  294 (405)
                      ..+    +.+.  -+++|+++++++..
T Consensus       118 v~~lie~I~e~--~G~IDiLVnSaA~~  142 (398)
T PRK13656        118 KQKVIELIKQD--LGQVDLVVYSLASP  142 (398)
T ss_pred             HHHHHHHHHHh--cCCCCEEEECCccC
Confidence            222    3332  24699999999865

>PRK07856 short chain dehydrogenase; Provisional

Probab=95.59  E-value=0.058  Score=49.11  Aligned_cols=36  Identities=19%  Similarity=0.271  Sum_probs=32.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      .|+++||.|++|++|.+.++.+...|++++.+.++.
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~   40 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRA   40 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCh
Confidence            578999999999999999999999999999887654

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=95.59  E-value=0.27  Score=45.76  Aligned_cols=151  Identities=15%  Similarity=0.269  Sum_probs=87.3

Q ss_pred             CCCCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHH--HHHhhcCCCCCCEEEEeCCCcHHHH
Q psy2960         151 SLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYR--MLKDYNSLSPGDVVIQNGANSACGQ  228 (405)
Q Consensus       151 ~~~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~--al~~~~~~~~g~~VLI~ga~G~vG~  228 (405)
                      -.++|+|.+..+    +|.+|..-....++++.+++.|-    ......|++.  ++.+  .+++|.+||=.|+  |.|.
T Consensus       108 P~rig~~f~I~P----sw~~~~~~~~~~~i~lDPGlAFG----TG~HpTT~lcL~~Le~--~~~~g~~vlDvGc--GSGI  175 (300)
T COG2264         108 PVRIGERFVIVP----SWREYPEPSDELNIELDPGLAFG----TGTHPTTSLCLEALEK--LLKKGKTVLDVGC--GSGI  175 (300)
T ss_pred             cEEeeeeEEECC----CCccCCCCCCceEEEEccccccC----CCCChhHHHHHHHHHH--hhcCCCEEEEecC--ChhH
Confidence            467899888874    56666544356778888888664    2233444333  3433  4569999999998  4466


Q ss_pred             HHHHHHHHcCCcEEEEecCCcc-hHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECC-Cchh---HHHHHHhc
Q psy2960         229 NVIQIARHWGLKTINIVRNRDD-IDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV-GGNS---ATNLLRTL  303 (405)
Q Consensus       229 ~aiqla~~~G~~v~~~~~~~~~-~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~-g~~~---~~~~~~~l  303 (405)
                      ++|.. ..+||..+..++.++. .+..++.++..+.+......-+. ....-.+..+|+|+-.. ....   .....+++
T Consensus       176 LaIAa-~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~-~~~~~~~~~~DvIVANILA~vl~~La~~~~~~l  253 (300)
T COG2264         176 LAIAA-AKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFL-LLEVPENGPFDVIVANILAEVLVELAPDIKRLL  253 (300)
T ss_pred             HHHHH-HHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhccccc-chhhcccCcccEEEehhhHHHHHHHHHHHHHHc
Confidence            66654 4568875555544332 23334444445554311000010 11111145799988655 3322   23457889


Q ss_pred             ccCCEEEEEecc
Q psy2960         304 VSKGVMVTYGGM  315 (405)
Q Consensus       304 ~~~G~~v~~g~~  315 (405)
                      +|+|+++.-|-.
T Consensus       254 kpgg~lIlSGIl  265 (300)
T COG2264         254 KPGGRLILSGIL  265 (300)
T ss_pred             CCCceEEEEeeh
Confidence            999999998843

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=95.58  E-value=0.08  Score=48.06  Aligned_cols=35  Identities=26%  Similarity=0.249  Sum_probs=31.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN  247 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~  247 (405)
                      .++++||.|++|++|...+..+...|++++.+.++
T Consensus         7 ~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~   41 (252)
T PRK08220          7 SGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQA   41 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecc
Confidence            57899999999999999999998999999988754

>PRK08309 short chain dehydrogenase; Provisional

Probab=95.53  E-value=0.34  Score=41.71  Aligned_cols=91  Identities=12%  Similarity=0.040  Sum_probs=48.8

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE--eChhh---HHH-Hhhh-cCCCCCcEEE
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV--FTEEE---LRN-ISRD-ASIPKPKLAL  288 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v--~~~~d---~~~-i~~~-t~g~g~Dvvl  288 (405)
                      +++|.||+ |+|...++.+...|++|+++.++.+..++........+.-..  .|..|   ... +... ...+++|+++
T Consensus         2 ~vlVtGGt-G~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id~lv   80 (177)
T PRK08309          2 HALVIGGT-GMLKRVSLWLCEKGFHVSVIARREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGPFDLAV   80 (177)
T ss_pred             EEEEECcC-HHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence            58999997 555556666667899998887664332221111211111111  13332   333 3222 1234789999


Q ss_pred             ECCCchhHHHHHHhcccCC
Q psy2960         289 NCVGGNSATNLLRTLVSKG  307 (405)
Q Consensus       289 d~~g~~~~~~~~~~l~~~G  307 (405)
                      +.+-..........++..|
T Consensus        81 ~~vh~~~~~~~~~~~~~~g   99 (177)
T PRK08309         81 AWIHSSAKDALSVVCRELD   99 (177)
T ss_pred             EeccccchhhHHHHHHHHc
Confidence            9887665555444444444

>PRK08618 ornithine cyclodeaminase; Validated

Probab=95.52  E-value=0.15  Score=48.66  Aligned_cols=103  Identities=5%  Similarity=0.137  Sum_probs=64.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHH-HHHcCCcEEEEecCCc-chHHHHHHHH-HcCCcEEeChhhHHH-HhhhcCCCCCcEEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQI-ARHWGLKTINIVRNRD-DIDKLKSYLK-SLGADYVFTEEELRN-ISRDASIPKPKLAL  288 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiql-a~~~G~~v~~~~~~~~-~~~~~~~~~~-~lg~~~v~~~~d~~~-i~~~t~g~g~Dvvl  288 (405)
                      ...+++|.|+ |+.|.+.+.. +...+++.+.+.+... +.++..+.+. +++.+ +...++.++ +      ...|+|+
T Consensus       126 ~~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~------~~aDiVi  197 (325)
T PRK08618        126 DAKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTE-IYVVNSADEAI------EEADIIV  197 (325)
T ss_pred             CCcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCc-EEEeCCHHHHH------hcCCEEE
Confidence            4678999999 8999877754 4566887777775432 2222222222 23443 222334443 3      3579999


Q ss_pred             ECCCchhHHHHHHhcccCCEEEEEeccCCCCcccCc
Q psy2960         289 NCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPT  324 (405)
Q Consensus       289 d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~  324 (405)
                      .|++.....-. +.+++|-.++.+|.......+++.
T Consensus       198 ~aT~s~~p~i~-~~l~~G~hV~~iGs~~p~~~E~~~  232 (325)
T PRK08618        198 TVTNAKTPVFS-EKLKKGVHINAVGSFMPDMQELPS  232 (325)
T ss_pred             EccCCCCcchH-HhcCCCcEEEecCCCCcccccCCH
Confidence            99987655445 889999999999965443334443

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=95.51  E-value=0.054  Score=50.48  Aligned_cols=73  Identities=12%  Similarity=0.094  Sum_probs=44.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEe-cCCcchHHHHHHHHHcCCc---EEeCh-hhHHHHhhhcCCCCCcEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIV-RNRDDIDKLKSYLKSLGAD---YVFTE-EELRNISRDASIPKPKLA  287 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~-~~~~~~~~~~~~~~~lg~~---~v~~~-~d~~~i~~~t~g~g~Dvv  287 (405)
                      .|.+|+|.|+ ||.+.+++..+..+|++.+.++ ++.++.+   +.+..++..   ..+.. ++...   .  -..+|+|
T Consensus       124 ~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~---~La~~~~~~~~~~~~~~~~~~~~---~--~~~~DiV  194 (282)
T TIGR01809       124 AGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLS---RLVDLGVQVGVITRLEGDSGGLA---I--EKAAEVL  194 (282)
T ss_pred             CCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHH---HHHHHhhhcCcceeccchhhhhh---c--ccCCCEE
Confidence            5789999999 9999999999999999655444 4433322   223333221   11211 11111   1  1358999


Q ss_pred             EECCCch
Q psy2960         288 LNCVGGN  294 (405)
Q Consensus       288 ld~~g~~  294 (405)
                      |+|++..
T Consensus       195 InaTp~g  201 (282)
T TIGR01809       195 VSTVPAD  201 (282)
T ss_pred             EECCCCC
Confidence            9998753

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=95.51  E-value=0.15  Score=44.39  Aligned_cols=99  Identities=18%  Similarity=0.150  Sum_probs=60.3

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEE
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLA  287 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvv  287 (405)
                      .+++|++||-.|+  |.|..++.+++.. +++++++-.+++..+...+.+++.+.+.+ +-..+..++   .....+|+|
T Consensus        42 ~l~~g~~VLDiGc--GtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~---~~~~~fDlV  116 (187)
T PRK00107         42 YLPGGERVLDVGS--GAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEF---GQEEKFDVV  116 (187)
T ss_pred             hcCCCCeEEEEcC--CCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhC---CCCCCccEE
Confidence            4556999999998  4577777777655 56777775444433334455556665432 111222221   113479999


Q ss_pred             EECCCc---hhHHHHHHhcccCCEEEEEe
Q psy2960         288 LNCVGG---NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       288 ld~~g~---~~~~~~~~~l~~~G~~v~~g  313 (405)
                      +-....   .....+.++|+++|+++.+-
T Consensus       117 ~~~~~~~~~~~l~~~~~~LkpGG~lv~~~  145 (187)
T PRK00107        117 TSRAVASLSDLVELCLPLLKPGGRFLALK  145 (187)
T ss_pred             EEccccCHHHHHHHHHHhcCCCeEEEEEe
Confidence            964322   23345679999999998873

>PRK06179 short chain dehydrogenase; Provisional

Probab=95.50  E-value=0.021  Score=52.59  Aligned_cols=75  Identities=15%  Similarity=0.217  Sum_probs=48.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eCh---hhHHH-Hhhhc-CCCCCcE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTE---EELRN-ISRDA-SIPKPKL  286 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~---~d~~~-i~~~t-~g~g~Dv  286 (405)
                      .+.+|+|.||+|++|...++.+...|++|+++.++.+..    +.  ..+...+ .|.   +++.. +.+.. ..+.+|+
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~----~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~   76 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARA----AP--IPGVELLELDVTDDASVQAAVDEVIARAGRIDV   76 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhc----cc--cCCCeeEEeecCCHHHHHHHHHHHHHhCCCCCE
Confidence            357899999999999999999889999999888654321    11  1122222 232   23333 22221 1346899


Q ss_pred             EEECCCc
Q psy2960         287 ALNCVGG  293 (405)
Q Consensus       287 vld~~g~  293 (405)
                      +|++.|.
T Consensus        77 li~~ag~   83 (270)
T PRK06179         77 LVNNAGV   83 (270)
T ss_pred             EEECCCC
Confidence            9999984

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=95.48  E-value=0.19  Score=48.49  Aligned_cols=96  Identities=10%  Similarity=0.287  Sum_probs=65.9

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHcCCcEEeChh--hHHHHh--------------
Q psy2960         215 DVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRNIS--------------  276 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~--G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~--d~~~i~--------------  276 (405)
                      ++|.|.|++|.+|..++.+.+..  .+++++.+... ..+...+.+++++...+.-.+  ....++              
T Consensus         2 k~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~-n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~   80 (385)
T PRK05447          2 KRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGK-NVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGE   80 (385)
T ss_pred             ceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCC-CHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEECh
Confidence            57999999999999999998776  67888887443 345667888889988765322  111122              


Q ss_pred             ----hhcCCCCCcEEEECCCch-hHHHHHHhcccCCEEEE
Q psy2960         277 ----RDASIPKPKLALNCVGGN-SATNLLRTLVSKGVMVT  311 (405)
Q Consensus       277 ----~~t~g~g~Dvvld~~g~~-~~~~~~~~l~~~G~~v~  311 (405)
                          ++.....+|+|++++++. .+...+.+++.|-++.+
T Consensus        81 ~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaL  120 (385)
T PRK05447         81 EGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIAL  120 (385)
T ss_pred             hHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEE
Confidence                222224589999998774 45556777776666554

>KOG1610|consensus

Probab=95.47  E-value=0.23  Score=46.09  Aligned_cols=80  Identities=13%  Similarity=0.123  Sum_probs=56.0

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE--EeC---hhhH---HH-HhhhcCCC
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY--VFT---EEEL---RN-ISRDASIP  282 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~--v~~---~~d~---~~-i~~~t~g~  282 (405)
                      -.+.-|+|.|+.+|.|...+.-+...|.+|++.+-+.+..+......+ .+--+  .+|   ++++   .+ +++..+..
T Consensus        27 ~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~-s~rl~t~~LDVT~~esi~~a~~~V~~~l~~~  105 (322)
T KOG1610|consen   27 LSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETK-SPRLRTLQLDVTKPESVKEAAQWVKKHLGED  105 (322)
T ss_pred             cCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhc-CCcceeEeeccCCHHHHHHHHHHHHHhcccc
Confidence            356779999999999999999999999999999966555444333332 12111  122   2332   33 67777778


Q ss_pred             CCcEEEECCC
Q psy2960         283 KPKLALNCVG  292 (405)
Q Consensus       283 g~Dvvld~~g  292 (405)
                      |.--++|+.|
T Consensus       106 gLwglVNNAG  115 (322)
T KOG1610|consen  106 GLWGLVNNAG  115 (322)
T ss_pred             cceeEEeccc
Confidence            8889999998

>PRK08219 short chain dehydrogenase; Provisional

Probab=95.44  E-value=0.14  Score=45.53  Aligned_cols=76  Identities=14%  Similarity=0.159  Sum_probs=46.4

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc-CCcEE-eChhhHHHHhhhcC-CCCCcEEEEC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADYV-FTEEELRNISRDAS-IPKPKLALNC  290 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l-g~~~v-~~~~d~~~i~~~t~-g~g~Dvvld~  290 (405)
                      ..++||.||+|++|...+..+... ++|+++.++.++.++..   ... +...+ .|-.+...+.+... -.++|.+|.+
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~   78 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELA---AELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVHN   78 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHH---HHhccceEEecCCCCHHHHHHHHHhcCCCCEEEEC
Confidence            368999999999999999877766 89998887644322111   122 22211 23333222322221 1368999999


Q ss_pred             CCc
Q psy2960         291 VGG  293 (405)
Q Consensus       291 ~g~  293 (405)
                      .|.
T Consensus        79 ag~   81 (227)
T PRK08219         79 AGV   81 (227)
T ss_pred             CCc
Confidence            874

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=95.44  E-value=0.091  Score=48.86  Aligned_cols=93  Identities=17%  Similarity=0.160  Sum_probs=55.5

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHcCCcEEeCh-hhHHHHhhhcCCCCCcEEEE
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTE-EELRNISRDASIPKPKLALN  289 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~-~d~~~i~~~t~g~g~Dvvld  289 (405)
                      ..+.+|+|.|+ |++|.+++..+...|+ +++++.++.++.+.   .+..++....+.. .+..+   .  -..+|+|++
T Consensus       121 ~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~---l~~~~~~~~~~~~~~~~~~---~--~~~~DivIn  191 (278)
T PRK00258        121 LKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEE---LAKLFGALGKAELDLELQE---E--LADFDLIIN  191 (278)
T ss_pred             CCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH---HHHHhhhccceeecccchh---c--cccCCEEEE
Confidence            35789999998 9999999999999995 66666655433222   2223321110111 01111   0  245899999


Q ss_pred             CCCchhH------HHHHHhcccCCEEEEEe
Q psy2960         290 CVGGNSA------TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       290 ~~g~~~~------~~~~~~l~~~G~~v~~g  313 (405)
                      |+.....      .....+++++..++.+-
T Consensus       192 aTp~g~~~~~~~~~~~~~~l~~~~~v~Div  221 (278)
T PRK00258        192 ATSAGMSGELPLPPLPLSLLRPGTIVYDMI  221 (278)
T ss_pred             CCcCCCCCCCCCCCCCHHHcCCCCEEEEee
Confidence            9875331      11245677777777765

>PRK06523 short chain dehydrogenase; Provisional

Probab=95.43  E-value=0.014  Score=53.43  Aligned_cols=36  Identities=17%  Similarity=0.334  Sum_probs=32.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      +|++|||.|++|++|...++.+...|++|+.+.++.
T Consensus         8 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~   43 (260)
T PRK06523          8 AGKRALVTGGTKGIGAATVARLLEAGARVVTTARSR   43 (260)
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCCh
Confidence            578999999999999999999988999999887654

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=95.43  E-value=0.15  Score=45.99  Aligned_cols=106  Identities=17%  Similarity=0.243  Sum_probs=67.5

Q ss_pred             HHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCC
Q psy2960         205 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIP  282 (405)
Q Consensus       205 l~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~  282 (405)
                      +....++++|++||=.|+  |.|-.|..+++..|- +|+++--+.+..+.-.+.+.+.|...+ +...|.+.+.  ....
T Consensus        43 ~i~~~~~~~g~~vLDva~--GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP--f~D~  118 (238)
T COG2226          43 LISLLGIKPGDKVLDVAC--GTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP--FPDN  118 (238)
T ss_pred             HHHhhCCCCCCEEEEecC--CccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC--CCCC
Confidence            344456679999998886  779999999999974 566654444443434444555554321 1122222211  2245


Q ss_pred             CCcEEEECCCc-------hhHHHHHHhcccCCEEEEEec
Q psy2960         283 KPKLALNCVGG-------NSATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       283 g~Dvvld~~g~-------~~~~~~~~~l~~~G~~v~~g~  314 (405)
                      .||+|.-+.|=       ..+.+..|.|+|+|+++.+-.
T Consensus       119 sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~  157 (238)
T COG2226         119 SFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEF  157 (238)
T ss_pred             ccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEc
Confidence            78999887772       234567799999999988864

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=95.40  E-value=0.16  Score=44.59  Aligned_cols=99  Identities=16%  Similarity=0.123  Sum_probs=58.0

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEE
Q psy2960         209 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLA  287 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvv  287 (405)
                      ....++.+||-.|+  |.|..+..+|+. |++|+++--+.+..+...+.+...+...+ +...|+..   ..-...+|+|
T Consensus        26 l~~~~~~~vLDiGc--G~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~---~~~~~~fD~I   99 (197)
T PRK11207         26 VKVVKPGKTLDLGC--GNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN---LTFDGEYDFI   99 (197)
T ss_pred             cccCCCCcEEEECC--CCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh---CCcCCCcCEE
Confidence            34567789999998  458888888875 88888885554433333333334343321 11122221   1113469999


Q ss_pred             EECCCc---------hhHHHHHHhcccCCEEEEEe
Q psy2960         288 LNCVGG---------NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       288 ld~~g~---------~~~~~~~~~l~~~G~~v~~g  313 (405)
                      +.+..-         ..+....+.|+|+|.++.+.
T Consensus       100 ~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~  134 (197)
T PRK11207        100 LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA  134 (197)
T ss_pred             EEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            976431         12234568899999976554

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.38  E-value=0.12  Score=47.14  Aligned_cols=35  Identities=14%  Similarity=0.177  Sum_probs=30.0

Q ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHcCCcEEEEecC
Q psy2960         213 PGDVVIQNGAN--SACGQNVIQIARHWGLKTINIVRN  247 (405)
Q Consensus       213 ~g~~VLI~ga~--G~vG~~aiqla~~~G~~v~~~~~~  247 (405)
                      .|.+|||.|++  |++|.+.+..+...|++++.+.++
T Consensus         4 ~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~   40 (256)
T PRK12748          4 MKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWS   40 (256)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCC
Confidence            46889999998  489999998888889999888765

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=95.34  E-value=0.087  Score=50.00  Aligned_cols=78  Identities=18%  Similarity=0.174  Sum_probs=48.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC--c-EEe--ChhhHHHHhhhcCCCCCcEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA--D-YVF--TEEELRNISRDASIPKPKLA  287 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~--~-~v~--~~~d~~~i~~~t~g~g~Dvv  287 (405)
                      .|.+|||.||+|.+|...+..+...|++|++++++.+............+.  . .++  |-.+...+.+..  .++|+|
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~--~~~d~v   81 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAI--DGCETV   81 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHH--cCCCEE
Confidence            478999999999999999999999999998887665432221111111111  1 112  333322233322  258999


Q ss_pred             EECCC
Q psy2960         288 LNCVG  292 (405)
Q Consensus       288 ld~~g  292 (405)
                      +.+.|
T Consensus        82 ih~A~   86 (325)
T PLN02989         82 FHTAS   86 (325)
T ss_pred             EEeCC
Confidence            99987

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.33  E-value=0.19  Score=46.74  Aligned_cols=95  Identities=16%  Similarity=0.193  Sum_probs=60.0

Q ss_pred             CCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHH
Q psy2960         194 ITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELR  273 (405)
Q Consensus       194 ~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~  273 (405)
                      .|+........+....---.|++|+|.|++|-+|...+.++...|++|++ +.+..                    .+  
T Consensus       139 ~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv-~~~~t--------------------~~--  195 (283)
T PRK14192        139 GSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANATVTI-CHSRT--------------------QN--  195 (283)
T ss_pred             cCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEE-EeCCc--------------------hh--
Confidence            34444323333333222347999999999555999999999999995444 42211                    01  


Q ss_pred             HHhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEecc
Q psy2960         274 NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       274 ~i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~  315 (405)
                       +.+.+  +.+|+|++++|.+... ..+.++++-.++.+|..
T Consensus       196 -L~~~~--~~aDIvI~AtG~~~~v-~~~~lk~gavViDvg~n  233 (283)
T PRK14192        196 -LPELV--KQADIIVGAVGKPELI-KKDWIKQGAVVVDAGFH  233 (283)
T ss_pred             -HHHHh--ccCCEEEEccCCCCcC-CHHHcCCCCEEEEEEEe
Confidence             11111  3579999999866532 23668999899998843

>KOG1208|consensus

Probab=95.31  E-value=0.097  Score=49.42  Aligned_cols=78  Identities=15%  Similarity=0.209  Sum_probs=54.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH-cCCcEEe----Chhh------HHH-HhhhcC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADYVF----TEEE------LRN-ISRDAS  280 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~-lg~~~v~----~~~d------~~~-i~~~t~  280 (405)
                      .|.+++|.|+++|+|..++.-+...|++|+.++++.+..++..+...+ .....+.    |-.+      |.+ +.+  .
T Consensus        34 ~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~--~  111 (314)
T KOG1208|consen   34 SGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKK--K  111 (314)
T ss_pred             CCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHh--c
Confidence            568999999999999999999999999999999887554444444443 3333332    3222      233 322  2


Q ss_pred             CCCCcEEEECCC
Q psy2960         281 IPKPKLALNCVG  292 (405)
Q Consensus       281 g~g~Dvvld~~g  292 (405)
                      ....|+.|+..|
T Consensus       112 ~~~ldvLInNAG  123 (314)
T KOG1208|consen  112 EGPLDVLINNAG  123 (314)
T ss_pred             CCCccEEEeCcc
Confidence            567899999887

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.29  E-value=0.092  Score=47.65  Aligned_cols=78  Identities=12%  Similarity=0.142  Sum_probs=47.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE-Ee--Ch---hhHHH-Hhhh--cCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-VF--TE---EELRN-ISRD--ASIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v~--~~---~d~~~-i~~~--t~g~g  283 (405)
                      .+.++||.|++|++|...+..+...|++++.+.++.+..  ..+....++... ++  |-   ++... +.+.  ..+.+
T Consensus         4 ~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   81 (253)
T PRK08642          4 SEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDA--AEALADELGDRAIALQADVTDREQVQAMFATATEHFGKP   81 (253)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHH--HHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence            357899999999999999999989999998876543221  122223343221 11  22   22222 2221  11334


Q ss_pred             CcEEEECCC
Q psy2960         284 PKLALNCVG  292 (405)
Q Consensus       284 ~Dvvld~~g  292 (405)
                      +|+++.+.|
T Consensus        82 id~li~~ag   90 (253)
T PRK08642         82 ITTVVNNAL   90 (253)
T ss_pred             CeEEEECCC
Confidence            999999876

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=95.26  E-value=0.08  Score=50.21  Aligned_cols=38  Identities=21%  Similarity=0.289  Sum_probs=33.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD  250 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~  250 (405)
                      .|.+|||.||+|.+|...+..+...|.+|++++++.+.
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~   41 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTD   41 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcc
Confidence            57899999999999999999888899999988876554

>PRK07023 short chain dehydrogenase; Provisional

Probab=95.24  E-value=0.097  Score=47.33  Aligned_cols=34  Identities=18%  Similarity=0.319  Sum_probs=30.4

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRD  249 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~  249 (405)
                      ++||.|++|++|...++.+...|++++.++++.+
T Consensus         3 ~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~   36 (243)
T PRK07023          3 RAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRH   36 (243)
T ss_pred             eEEEecCCcchHHHHHHHHHhCCCEEEEEecCcc
Confidence            6999999999999999998889999998887643

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=95.23  E-value=0.11  Score=48.44  Aligned_cols=92  Identities=9%  Similarity=0.064  Sum_probs=58.2

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhc----CCCC-CcEEEE
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDA----SIPK-PKLALN  289 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t----~g~g-~Dvvld  289 (405)
                      +|||.||+|.+|...++.+...|.+|.+++++.+..       ...+...+ .|..|.+.+.+..    .-.| +|.++-
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~-------~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~   73 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSS-------AGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYL   73 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccc-------cCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEE
Confidence            489999999999999999999999999999876531       11233222 3444433332222    1245 899987


Q ss_pred             CCCch-----hHHHHHHhcccCC--EEEEEec
Q psy2960         290 CVGGN-----SATNLLRTLVSKG--VMVTYGG  314 (405)
Q Consensus       290 ~~g~~-----~~~~~~~~l~~~G--~~v~~g~  314 (405)
                      +.+..     .....++.++..|  +||.++.
T Consensus        74 ~~~~~~~~~~~~~~~i~aa~~~gv~~~V~~Ss  105 (285)
T TIGR03649        74 VAPPIPDLAPPMIKFIDFARSKGVRRFVLLSA  105 (285)
T ss_pred             eCCCCCChhHHHHHHHHHHHHcCCCEEEEeec
Confidence            77631     2223455554444  7887764

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.23  E-value=0.83  Score=40.76  Aligned_cols=92  Identities=8%  Similarity=-0.062  Sum_probs=59.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      .|.+|||.|| |.++.-=+..+...||+|.+++-  +-.++..+++ +.|.-... .+++.. ..   -.++++||-|++
T Consensus        24 ~~~~VLVVGG-G~VA~RK~~~Ll~~gA~VtVVap--~i~~el~~l~-~~~~i~~~-~r~~~~-~d---l~g~~LViaATd   94 (223)
T PRK05562         24 NKIKVLIIGG-GKAAFIKGKTFLKKGCYVYILSK--KFSKEFLDLK-KYGNLKLI-KGNYDK-EF---IKDKHLIVIATD   94 (223)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcC--CCCHHHHHHH-hCCCEEEE-eCCCCh-HH---hCCCcEEEECCC
Confidence            5789999999 99998888888889999888862  2233333333 22322222 222222 01   146899999999


Q ss_pred             chhHHHHH-HhcccCCEEEEEe
Q psy2960         293 GNSATNLL-RTLVSKGVMVTYG  313 (405)
Q Consensus       293 ~~~~~~~~-~~l~~~G~~v~~g  313 (405)
                      .+.+...+ ...+..+.++...
T Consensus        95 D~~vN~~I~~~a~~~~~lvn~v  116 (223)
T PRK05562         95 DEKLNNKIRKHCDRLYKLYIDC  116 (223)
T ss_pred             CHHHHHHHHHHHHHcCCeEEEc
Confidence            98887765 4445557666655

>KOG1502|consensus

Probab=95.22  E-value=0.1  Score=49.05  Aligned_cols=74  Identities=20%  Similarity=0.298  Sum_probs=53.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC-c---EEe--C---hhhHHHHhhhcCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA-D---YVF--T---EEELRNISRDASIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~-~---~v~--~---~~d~~~i~~~t~g~g  283 (405)
                      .+.+|+|.||+|=+|...+..+...|++|.+++|+.++ ++..+.++++.. .   .++  |   ++.+..   .  -.|
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~-~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~---a--i~g   78 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPED-EKKTEHLRKLEGAKERLKLFKADLLDEGSFDK---A--IDG   78 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcch-hhhHHHHHhcccCcccceEEeccccccchHHH---H--HhC
Confidence            57899999999999999999999999999999999876 444455666652 1   122  1   222333   2  136


Q ss_pred             CcEEEECCC
Q psy2960         284 PKLALNCVG  292 (405)
Q Consensus       284 ~Dvvld~~g  292 (405)
                      .|.||-+..
T Consensus        79 cdgVfH~As   87 (327)
T KOG1502|consen   79 CDGVFHTAS   87 (327)
T ss_pred             CCEEEEeCc
Confidence            888887664

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.19  E-value=0.18  Score=46.64  Aligned_cols=94  Identities=12%  Similarity=0.167  Sum_probs=68.1

Q ss_pred             ccCCCcHHHHHHHHHhhcCC-CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChh
Q psy2960         192 SGITSNPCTAYRMLKDYNSL-SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE  270 (405)
Q Consensus       192 a~~~~~~~ta~~al~~~~~~-~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~  270 (405)
                      ..+||+....+..|.. -++ -.|.+|+|.|.++-+|.-.+.++...|++|+..-+. .                    .
T Consensus       136 ~~~PcTp~aii~lL~~-~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~-t--------------------~  193 (285)
T PRK14189        136 LFRPCTPYGVMKMLES-IGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK-T--------------------R  193 (285)
T ss_pred             CCcCCCHHHHHHHHHH-cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC-C--------------------C
Confidence            3567776666666655 344 379999999998888999999999999988765321 1                    1


Q ss_pred             hHHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEec
Q psy2960         271 ELRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       271 d~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~  314 (405)
                      +..+ +      +..|+|+-++|.+.+... +.++++-.++.+|.
T Consensus       194 ~l~~~~------~~ADIVV~avG~~~~i~~-~~ik~gavVIDVGi  231 (285)
T PRK14189        194 DLAAHT------RQADIVVAAVGKRNVLTA-DMVKPGATVIDVGM  231 (285)
T ss_pred             CHHHHh------hhCCEEEEcCCCcCccCH-HHcCCCCEEEEccc
Confidence            1122 2      245999999998765433 88999999999984

>KOG1200|consensus

Probab=95.17  E-value=0.12  Score=44.45  Aligned_cols=74  Identities=20%  Similarity=0.309  Sum_probs=52.4

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC--cEE-e--C---hhh----HHH-HhhhcC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA--DYV-F--T---EEE----LRN-ISRDAS  280 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~--~~v-~--~---~~d----~~~-i~~~t~  280 (405)
                      ...++|.|++.|+|.+..|.....||++.+.....   ....+.++.+|.  +|. |  |   .+|    +++ ++.+  
T Consensus        14 sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~---~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~--   88 (256)
T KOG1200|consen   14 SKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDS---AAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSL--   88 (256)
T ss_pred             cceeEEecCCchHHHHHHHHHHhcCcEEEEeecch---hhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhc--
Confidence            45689999999999999999999999998886433   334566777776  444 2  1   223    233 3322  


Q ss_pred             CCCCcEEEECCCc
Q psy2960         281 IPKPKLALNCVGG  293 (405)
Q Consensus       281 g~g~Dvvld~~g~  293 (405)
                       +.+++++||.|-
T Consensus        89 -g~psvlVncAGI  100 (256)
T KOG1200|consen   89 -GTPSVLVNCAGI  100 (256)
T ss_pred             -CCCcEEEEcCcc
Confidence             378999999983

>KOG1207|consensus

Probab=95.16  E-value=0.041  Score=46.29  Aligned_cols=77  Identities=19%  Similarity=0.242  Sum_probs=51.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC---cEEeChhhHHHHhhh-cCCCCCcEEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA---DYVFTEEELRNISRD-ASIPKPKLAL  288 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~---~~v~~~~d~~~i~~~-t~g~g~Dvvl  288 (405)
                      .|..|++.|+.-|+|...++-+...|++|+++++.++.   .....++-..   ..+.|-.+++.+.+. -.-..+|-.+
T Consensus         6 aG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~---L~sLV~e~p~~I~Pi~~Dls~wea~~~~l~~v~pidgLV   82 (245)
T KOG1207|consen    6 AGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEAN---LLSLVKETPSLIIPIVGDLSAWEALFKLLVPVFPIDGLV   82 (245)
T ss_pred             cceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHH---HHHHHhhCCcceeeeEecccHHHHHHHhhcccCchhhhh
Confidence            58899999999999999999999999999999977644   3344444332   122344555443332 2223456666


Q ss_pred             ECCC
Q psy2960         289 NCVG  292 (405)
Q Consensus       289 d~~g  292 (405)
                      |..|
T Consensus        83 NNAg   86 (245)
T KOG1207|consen   83 NNAG   86 (245)
T ss_pred             ccch
Confidence            6665

>PRK06101 short chain dehydrogenase; Provisional

Probab=95.10  E-value=0.11  Score=47.00  Aligned_cols=34  Identities=26%  Similarity=0.317  Sum_probs=29.8

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      .+++|.|++|++|...+..+...|++|+.+.++.
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~   35 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQ   35 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCH
Confidence            5799999999999998888888999998887654

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=95.10  E-value=0.33  Score=43.63  Aligned_cols=103  Identities=13%  Similarity=0.191  Sum_probs=62.0

Q ss_pred             HHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc--EEEEecCC----cch-----HHHHHHHHHcCCcEEeChh
Q psy2960         202 YRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK--TINIVRNR----DDI-----DKLKSYLKSLGADYVFTEE  270 (405)
Q Consensus       202 ~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~--v~~~~~~~----~~~-----~~~~~~~~~lg~~~v~~~~  270 (405)
                      +.++.....--.+.+|+|.|+ |+.|.+++..+...|++  .+.++++.    ..+     ++..++++.++... .+ .
T Consensus        13 ~~al~~~g~~l~~~rvlvlGA-GgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~-~~-~   89 (226)
T cd05311          13 LNALKLVGKKIEEVKIVINGA-GAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK-TG-G   89 (226)
T ss_pred             HHHHHHhCCCccCCEEEEECc-hHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc-cc-C
Confidence            344444322236789999999 99999999998899997  66665443    111     12234445543221 11 1


Q ss_pred             hHHH-HhhhcCCCCCcEEEECCCchhH-HHHHHhcccCCEEEEEe
Q psy2960         271 ELRN-ISRDASIPKPKLALNCVGGNSA-TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       271 d~~~-i~~~t~g~g~Dvvld~~g~~~~-~~~~~~l~~~G~~v~~g  313 (405)
                      ++.+ +      .++|++|++++...+ ...++.++++..+..+.
T Consensus        90 ~l~~~l------~~~dvlIgaT~~G~~~~~~l~~m~~~~ivf~ls  128 (226)
T cd05311          90 TLKEAL------KGADVFIGVSRPGVVKKEMIKKMAKDPIVFALA  128 (226)
T ss_pred             CHHHHH------hcCCEEEeCCCCCCCCHHHHHhhCCCCEEEEeC
Confidence            2222 3      247999999974333 35567777777666554

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>TIGR00438 rrmJ cell division protein FtsJ

Probab=95.08  E-value=0.49  Score=41.08  Aligned_cols=96  Identities=19%  Similarity=0.174  Sum_probs=55.0

Q ss_pred             hcCCCCCCEEEEeCCCcHHHHHHHHHHHHc-C-CcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhH--HH-HhhhcCC
Q psy2960         208 YNSLSPGDVVIQNGANSACGQNVIQIARHW-G-LKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEEL--RN-ISRDASI  281 (405)
Q Consensus       208 ~~~~~~g~~VLI~ga~G~vG~~aiqla~~~-G-~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~--~~-i~~~t~g  281 (405)
                      ...+++|++||..|+ |. |..+..+++.. + .+++++--++ .   +    ...+.+.+ .|..+.  .+ +.+.+..
T Consensus        27 ~~~i~~g~~VLDiG~-Gt-G~~~~~l~~~~~~~~~v~~vDis~-~---~----~~~~i~~~~~d~~~~~~~~~l~~~~~~   96 (188)
T TIGR00438        27 FKLIKPGDTVLDLGA-AP-GGWSQVAVEQVGGKGRVIAVDLQP-M---K----PIENVDFIRGDFTDEEVLNKIRERVGD   96 (188)
T ss_pred             hcccCCCCEEEEecC-CC-CHHHHHHHHHhCCCceEEEEeccc-c---c----cCCCceEEEeeCCChhHHHHHHHHhCC
Confidence            456789999999998 44 44555555554 3 3566654332 1   1    11233322 132221  22 4455556


Q ss_pred             CCCcEEEE-CC----Cc-------------hhHHHHHHhcccCCEEEEEe
Q psy2960         282 PKPKLALN-CV----GG-------------NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       282 ~g~Dvvld-~~----g~-------------~~~~~~~~~l~~~G~~v~~g  313 (405)
                      .++|+|+. ..    |.             ..+..+.++|+++|+++...
T Consensus        97 ~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~  146 (188)
T TIGR00438        97 DKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV  146 (188)
T ss_pred             CCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence            68999995 21    21             23345678999999998754

>PLN00016 RNA-binding protein; Provisional

Probab=95.07  E-value=0.19  Score=48.89  Aligned_cols=98  Identities=14%  Similarity=0.113  Sum_probs=63.6

Q ss_pred             CCEEEEe----CCCcHHHHHHHHHHHHcCCcEEEEecCCcchHH-------HHHHHHHcCCcEEe-ChhhHHHHhhhcCC
Q psy2960         214 GDVVIQN----GANSACGQNVIQIARHWGLKTINIVRNRDDIDK-------LKSYLKSLGADYVF-TEEELRNISRDASI  281 (405)
Q Consensus       214 g~~VLI~----ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~-------~~~~~~~lg~~~v~-~~~d~~~i~~~t~g  281 (405)
                      ..+|||.    ||+|-+|...+..+...|.+|++++++.+....       +...+...|...+. |..|...+.   ..
T Consensus        52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~---~~  128 (378)
T PLN00016         52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKV---AG  128 (378)
T ss_pred             cceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhh---cc
Confidence            4689999    999999999999998999999999977543111       01122234554443 444433321   24


Q ss_pred             CCCcEEEECCCchh--HHHHHHhcccCC--EEEEEec
Q psy2960         282 PKPKLALNCVGGNS--ATNLLRTLVSKG--VMVTYGG  314 (405)
Q Consensus       282 ~g~Dvvld~~g~~~--~~~~~~~l~~~G--~~v~~g~  314 (405)
                      .++|+|+++.+.+.  ....++.++..|  +||.++.
T Consensus       129 ~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS  165 (378)
T PLN00016        129 AGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSS  165 (378)
T ss_pred             CCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            57999999987543  234456555443  7888775

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.04  E-value=0.14  Score=46.84  Aligned_cols=33  Identities=12%  Similarity=0.172  Sum_probs=29.5

Q ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHcCCcEEEEe
Q psy2960         213 PGDVVIQNGAN--SACGQNVIQIARHWGLKTINIV  245 (405)
Q Consensus       213 ~g~~VLI~ga~--G~vG~~aiqla~~~G~~v~~~~  245 (405)
                      +|.++||.|++  +++|.+.+..+...|++|+.+.
T Consensus         5 ~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~   39 (256)
T PRK12859          5 KNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTY   39 (256)
T ss_pred             CCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEe
Confidence            58899999998  4899999999999999998874

>KOG1210|consensus

Probab=95.03  E-value=0.13  Score=47.66  Aligned_cols=81  Identities=14%  Similarity=0.117  Sum_probs=53.6

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE----E-------eChhhHHH-Hhhh
Q psy2960         211 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY----V-------FTEEELRN-ISRD  278 (405)
Q Consensus       211 ~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~----v-------~~~~d~~~-i~~~  278 (405)
                      -+|-..|+|.|++.|+|++.+..++..|+.|..++++.++.   .+..+.+....    |       .+++..+. +.+.
T Consensus        30 ~k~~~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl---~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l  106 (331)
T KOG1210|consen   30 PKPRRHILITGGSSGLGLALALECKREGADVTITARSGKKL---LEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEEL  106 (331)
T ss_pred             cCccceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHH---HHHHhhhhhhhccceeeEeccccccHHHHHHHHhhh
Confidence            34558999999999999999999999999999999876553   33333333211    1       12222222 3322


Q ss_pred             cC-CCCCcEEEECCCch
Q psy2960         279 AS-IPKPKLALNCVGGN  294 (405)
Q Consensus       279 t~-g~g~Dvvld~~g~~  294 (405)
                      -. ...+|.+|.|.|..
T Consensus       107 ~~~~~~~d~l~~cAG~~  123 (331)
T KOG1210|consen  107 RDLEGPIDNLFCCAGVA  123 (331)
T ss_pred             hhccCCcceEEEecCcc
Confidence            11 24689999999853

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=94.99  E-value=0.096  Score=49.86  Aligned_cols=76  Identities=11%  Similarity=0.063  Sum_probs=45.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcC--CcEEEEecCCcchHHHHHHHHHcCC---cEE-eChhhHHHHhhhcCCCCCcE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLGA---DYV-FTEEELRNISRDASIPKPKL  286 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G--~~v~~~~~~~~~~~~~~~~~~~lg~---~~v-~~~~d~~~i~~~t~g~g~Dv  286 (405)
                      .|.+|||.||+|.+|...+..+...|  .+|+++.++.....   +....+..   ..+ .|-.|...+.+..  .++|+
T Consensus         3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~---~~~~~~~~~~~~~v~~Dl~d~~~l~~~~--~~iD~   77 (324)
T TIGR03589         3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQW---EMQQKFPAPCLRFFIGDVRDKERLTRAL--RGVDY   77 (324)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHH---HHHHHhCCCcEEEEEccCCCHHHHHHHH--hcCCE
Confidence            47899999999999999998877765  57776654432211   11222221   111 2434433333332  25899


Q ss_pred             EEECCCc
Q psy2960         287 ALNCVGG  293 (405)
Q Consensus       287 vld~~g~  293 (405)
                      ||.+.|.
T Consensus        78 Vih~Ag~   84 (324)
T TIGR03589        78 VVHAAAL   84 (324)
T ss_pred             EEECccc
Confidence            9998873

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=94.99  E-value=0.12  Score=49.65  Aligned_cols=78  Identities=15%  Similarity=0.148  Sum_probs=48.6

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc-EEe--ChhhHHHHhhhcCCCCCcEEE
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YVF--TEEELRNISRDASIPKPKLAL  288 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~-~v~--~~~d~~~i~~~t~g~g~Dvvl  288 (405)
                      ..+.+|||.|++|.+|...++.+...|.+|+++.++.+..+...+.+.. +.. .++  |-.+...+.+..  .++|+||
T Consensus         8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~--~~~d~Vi   84 (353)
T PLN02896          8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKE-GDRLRLFRADLQEEGSFDEAV--KGCDGVF   84 (353)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhcc-CCeEEEEECCCCCHHHHHHHH--cCCCEEE
Confidence            4678999999999999999999999999999887654332221111111 211 112  222322233322  2579999


Q ss_pred             ECCC
Q psy2960         289 NCVG  292 (405)
Q Consensus       289 d~~g  292 (405)
                      .+.+
T Consensus        85 h~A~   88 (353)
T PLN02896         85 HVAA   88 (353)
T ss_pred             ECCc
Confidence            9886

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=94.97  E-value=0.28  Score=44.12  Aligned_cols=101  Identities=20%  Similarity=0.235  Sum_probs=65.0

Q ss_pred             hcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC--cEEEEecCCcchHHHHHHHHHcCCcEEeC--hhhHHHHhhhcCCCC
Q psy2960         208 YNSLSPGDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLGADYVFT--EEELRNISRDASIPK  283 (405)
Q Consensus       208 ~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~--~v~~~~~~~~~~~~~~~~~~~lg~~~v~~--~~d~~~i~~~t~g~g  283 (405)
                      .+++.||++|+=.|.  |.|.+++-||++.|.  +|+..-...+..+..++.++++|....+.  ..|..   +...+..
T Consensus        89 ~~gi~pg~rVlEAGt--GSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~---~~~~~~~  163 (256)
T COG2519          89 RLGISPGSRVLEAGT--GSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVR---EGIDEED  163 (256)
T ss_pred             HcCCCCCCEEEEccc--CchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccc---ccccccc
Confidence            379999999988776  669999999998876  45554333333333445555555533221  23332   2222347


Q ss_pred             CcEEEECCCc--hhHHHHHHhcccCCEEEEEe
Q psy2960         284 PKLALNCVGG--NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       284 ~Dvvld~~g~--~~~~~~~~~l~~~G~~v~~g  313 (405)
                      +|.|+=-...  +.+..+.+.|+++|.++.+.
T Consensus       164 vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~  195 (256)
T COG2519         164 VDAVFLDLPDPWNVLEHVSDALKPGGVVVVYS  195 (256)
T ss_pred             cCEEEEcCCChHHHHHHHHHHhCCCcEEEEEc
Confidence            8987654544  45567889999999999885

>PRK07578 short chain dehydrogenase; Provisional

Probab=94.94  E-value=0.34  Score=42.29  Aligned_cols=60  Identities=17%  Similarity=0.222  Sum_probs=39.7

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChh---hHHH-HhhhcCCCCCcEEEECC
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE---ELRN-ISRDASIPKPKLALNCV  291 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~---d~~~-i~~~t~g~g~Dvvld~~  291 (405)
                      ++||.|++|++|.+.+..+... ++++.+.++.+              ....|-.   +... +.+.   .++|+++++.
T Consensus         2 ~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~--------------~~~~D~~~~~~~~~~~~~~---~~id~lv~~a   63 (199)
T PRK07578          2 KILVIGASGTIGRAVVAELSKR-HEVITAGRSSG--------------DVQVDITDPASIRALFEKV---GKVDAVVSAA   63 (199)
T ss_pred             eEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC--------------ceEecCCChHHHHHHHHhc---CCCCEEEECC
Confidence            6899999999999888777666 88888775432              1122322   2333 3222   3689999988


Q ss_pred             Cc
Q psy2960         292 GG  293 (405)
Q Consensus       292 g~  293 (405)
                      |.
T Consensus        64 g~   65 (199)
T PRK07578         64 GK   65 (199)
T ss_pred             CC
Confidence            73

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=94.94  E-value=0.18  Score=47.62  Aligned_cols=86  Identities=20%  Similarity=0.271  Sum_probs=55.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      .|.+|.|.|. |.+|...++.++.+|+++++..++.+..         -+.+......+++++.     ...|+|+.++.
T Consensus       135 ~g~tvgIvG~-G~IG~~vA~~l~afG~~V~~~~~~~~~~---------~~~~~~~~~~~l~e~l-----~~aDvvv~~lP  199 (312)
T PRK15469        135 EDFTIGILGA-GVLGSKVAQSLQTWGFPLRCWSRSRKSW---------PGVQSFAGREELSAFL-----SQTRVLINLLP  199 (312)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCC---------CCceeecccccHHHHH-----hcCCEEEECCC
Confidence            5899999999 9999999999999999998876443210         1222222222233311     23588887776


Q ss_pred             ch-hH-----HHHHHhcccCCEEEEEe
Q psy2960         293 GN-SA-----TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       293 ~~-~~-----~~~~~~l~~~G~~v~~g  313 (405)
                      .. ..     ...++.|+++..+|.+|
T Consensus       200 lt~~T~~li~~~~l~~mk~ga~lIN~a  226 (312)
T PRK15469        200 NTPETVGIINQQLLEQLPDGAYLLNLA  226 (312)
T ss_pred             CCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence            32 11     12467778877777776

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=94.92  E-value=0.038  Score=44.64  Aligned_cols=94  Identities=16%  Similarity=0.226  Sum_probs=54.8

Q ss_pred             EEEEeCCCcHHHHHHHHHHHH-cCCcEEEEecCCcc--hHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         216 VVIQNGANSACGQNVIQIARH-WGLKTINIVRNRDD--IDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~-~G~~v~~~~~~~~~--~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      +|+|+|++|-+|.+.++.+.. -+.++.+.+.+.+.  ..+-...+...+...+.-+++.+++.+     .+|++||++.
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~-----~~DVvIDfT~   76 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLE-----EADVVIDFTN   76 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTT-----H-SEEEEES-
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcc-----cCCEEEEcCC
Confidence            689999999999999999988 68888888755431  000001111111111111233333211     2799999997


Q ss_pred             chhHHHHHHhcccCCEEEEEec
Q psy2960         293 GNSATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       293 ~~~~~~~~~~l~~~G~~v~~g~  314 (405)
                      .+.....++.+.+.|.-+.+|.
T Consensus        77 p~~~~~~~~~~~~~g~~~ViGT   98 (124)
T PF01113_consen   77 PDAVYDNLEYALKHGVPLVIGT   98 (124)
T ss_dssp             HHHHHHHHHHHHHHT-EEEEE-
T ss_pred             hHHhHHHHHHHHhCCCCEEEEC
Confidence            6666677776666687777774

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=94.90  E-value=0.8  Score=40.54  Aligned_cols=93  Identities=10%  Similarity=0.120  Sum_probs=63.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      .|.+|||.|+ |.+|.-=+.+....|++++++...-  .++...+....+... +. +.+.. ..+   .++++|+-+++
T Consensus        11 ~~k~VlvvGg-G~va~rKa~~ll~~ga~v~Vvs~~~--~~el~~~~~~~~i~~-~~-~~~~~-~~~---~~~~lviaAt~   81 (210)
T COG1648          11 EGKKVLVVGG-GSVALRKARLLLKAGADVTVVSPEF--EPELKALIEEGKIKW-IE-REFDA-EDL---DDAFLVIAATD   81 (210)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCEEEEEcCCc--cHHHHHHHHhcCcch-hh-cccCh-hhh---cCceEEEEeCC
Confidence            5789999999 9999999999999999999887443  244444444433221 11 22221 111   23799999999


Q ss_pred             chhHHHH-HHhcccCCEEEEEec
Q psy2960         293 GNSATNL-LRTLVSKGVMVTYGG  314 (405)
Q Consensus       293 ~~~~~~~-~~~l~~~G~~v~~g~  314 (405)
                      .+.+... .+...+.+.++....
T Consensus        82 d~~ln~~i~~~a~~~~i~vNv~D  104 (210)
T COG1648          82 DEELNERIAKAARERRILVNVVD  104 (210)
T ss_pred             CHHHHHHHHHHHHHhCCceeccC
Confidence            9888754 577788888887764

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.87  E-value=0.32  Score=45.02  Aligned_cols=95  Identities=15%  Similarity=0.115  Sum_probs=68.8

Q ss_pred             ccCCCcHHHHHHHHHhhcCCC-CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChh
Q psy2960         192 SGITSNPCTAYRMLKDYNSLS-PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE  270 (405)
Q Consensus       192 a~~~~~~~ta~~al~~~~~~~-~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~  270 (405)
                      ..+||+....+..+.. .++. .|.+|+|.|.+.-+|.-...++...||+|++.-+..                     .
T Consensus       137 ~~~PcTp~av~~ll~~-~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T---------------------~  194 (285)
T PRK10792        137 LLRPCTPRGIMTLLER-YGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT---------------------K  194 (285)
T ss_pred             CCCCCCHHHHHHHHHH-cCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC---------------------C
Confidence            3467777767766655 3443 699999999988899999999999999887663211                     1


Q ss_pred             hHHHHhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEec
Q psy2960         271 ELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       271 d~~~i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~  314 (405)
                      +..+   .  -+..|+++.++|.+.+... +.++++-.++.+|-
T Consensus       195 ~l~~---~--~~~ADIvi~avG~p~~v~~-~~vk~gavVIDvGi  232 (285)
T PRK10792        195 NLRH---H--VRNADLLVVAVGKPGFIPG-EWIKPGAIVIDVGI  232 (285)
T ss_pred             CHHH---H--HhhCCEEEEcCCCcccccH-HHcCCCcEEEEccc
Confidence            1222   1  1246999999998776332 77899999999983

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=94.86  E-value=0.23  Score=46.26  Aligned_cols=32  Identities=25%  Similarity=0.367  Sum_probs=27.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEe
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIV  245 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~  245 (405)
                      .+++|+|.|+ ||.+.+++.-+...|++.+.++
T Consensus       126 ~~k~vlilGa-GGaarAi~~aL~~~g~~~i~i~  157 (283)
T PRK14027        126 KLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVA  157 (283)
T ss_pred             CCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEE
Confidence            4789999999 9999999988888999765555

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=94.81  E-value=0.065  Score=49.82  Aligned_cols=31  Identities=19%  Similarity=0.324  Sum_probs=28.2

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEec
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVR  246 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~  246 (405)
                      +|||.|++|.+|...++.+...|.+|+++.+
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r   31 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTS   31 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCC
Confidence            4899999999999999999999999988864

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=94.80  E-value=0.12  Score=49.45  Aligned_cols=78  Identities=12%  Similarity=0.108  Sum_probs=47.8

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcch-HHHHHHHH-Hc------CCcEE-eChhhHHHHhhhcCCCCCc
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDI-DKLKSYLK-SL------GADYV-FTEEELRNISRDASIPKPK  285 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~-~~~~~~~~-~l------g~~~v-~~~~d~~~i~~~t~g~g~D  285 (405)
                      ++|||.||+|.+|...++.+...|.+|+++.++.+.. ..+.+... ..      +...+ .|-.|...+.+...+.++|
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d   80 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKPT   80 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCCC
Confidence            4799999999999999999999999999988664311 11122111 11      12222 2333332233332234689


Q ss_pred             EEEECCC
Q psy2960         286 LALNCVG  292 (405)
Q Consensus       286 vvld~~g  292 (405)
                      +|+.+.+
T Consensus        81 ~ViH~Aa   87 (343)
T TIGR01472        81 EIYNLAA   87 (343)
T ss_pred             EEEECCc
Confidence            9999886

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=94.80  E-value=0.13  Score=47.37  Aligned_cols=33  Identities=12%  Similarity=0.201  Sum_probs=29.5

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecC
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRN  247 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~  247 (405)
                      .+++|.||++++|.+.++.+...|++|+.+.++
T Consensus         2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~   34 (267)
T TIGR02685         2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHR   34 (267)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCC
Confidence            368999999999999999999999999888654

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=94.79  E-value=0.39  Score=44.84  Aligned_cols=77  Identities=16%  Similarity=0.234  Sum_probs=42.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEe-cCCcchHHHHHHHHHcCCc-----EEeChhhHHHHhhhcCCCCCcE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIV-RNRDDIDKLKSYLKSLGAD-----YVFTEEELRNISRDASIPKPKL  286 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~-~~~~~~~~~~~~~~~lg~~-----~v~~~~d~~~i~~~t~g~g~Dv  286 (405)
                      .|.++||.|+ ||.+.+++..+...|++.+.++ ++.+..++..+++..++..     .+...++...+.+.  ...+|+
T Consensus       123 ~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~--~~~aDi  199 (288)
T PRK12749        123 KGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEA--LASADI  199 (288)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhh--cccCCE
Confidence            6789999999 8889887777777898655554 4432112222333333221     12222211112211  246899


Q ss_pred             EEECCC
Q psy2960         287 ALNCVG  292 (405)
Q Consensus       287 vld~~g  292 (405)
                      |+||+.
T Consensus       200 vINaTp  205 (288)
T PRK12749        200 LTNGTK  205 (288)
T ss_pred             EEECCC
Confidence            999885

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=94.79  E-value=0.27  Score=43.89  Aligned_cols=94  Identities=15%  Similarity=0.137  Sum_probs=56.6

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhH--HHHhhhcCCCCCcEEEE
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEEL--RNISRDASIPKPKLALN  289 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~--~~i~~~t~g~g~Dvvld  289 (405)
                      -+|.+||=.||+|  |+.+.-+|+ +|++|+++--+++..+.....+.+-|..  +|++..  +++...  +..||+|+.
T Consensus        58 l~g~~vLDvGCGg--G~Lse~mAr-~Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~--~~~FDvV~c  130 (243)
T COG2227          58 LPGLRVLDVGCGG--GILSEPLAR-LGASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASA--GGQFDVVTC  130 (243)
T ss_pred             CCCCeEEEecCCc--cHhhHHHHH-CCCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhc--CCCccEEEE
Confidence            3899999999954  565555554 5799999865544333333333344443  445432  223222  478999985


Q ss_pred             -----CCCch--hHHHHHHhcccCCEEEEE
Q psy2960         290 -----CVGGN--SATNLLRTLVSKGVMVTY  312 (405)
Q Consensus       290 -----~~g~~--~~~~~~~~l~~~G~~v~~  312 (405)
                           -+..+  .+.++.++++|+|.+..-
T Consensus       131 mEVlEHv~dp~~~~~~c~~lvkP~G~lf~S  160 (243)
T COG2227         131 MEVLEHVPDPESFLRACAKLVKPGGILFLS  160 (243)
T ss_pred             hhHHHccCCHHHHHHHHHHHcCCCcEEEEe
Confidence                 33332  334567999999987653

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=94.78  E-value=0.087  Score=47.26  Aligned_cols=77  Identities=16%  Similarity=0.216  Sum_probs=48.2

Q ss_pred             EEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc-chHHHHHHHHHcCCcE-E--eChhh---HHH-Hhhhc-CCCCCcEE
Q psy2960         217 VIQNGANSACGQNVIQIARHWGLKTINIVRNRD-DIDKLKSYLKSLGADY-V--FTEEE---LRN-ISRDA-SIPKPKLA  287 (405)
Q Consensus       217 VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~-~~~~~~~~~~~lg~~~-v--~~~~d---~~~-i~~~t-~g~g~Dvv  287 (405)
                      |||.|++|++|...+..+...|++++.+.++.+ ..+...+...+.|... +  .|-.+   ... +.+.. .-.++|+|
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   80 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPIDIL   80 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            589999999999999999889999988876642 2222334444555422 1  23222   222 22111 12468999


Q ss_pred             EECCCc
Q psy2960         288 LNCVGG  293 (405)
Q Consensus       288 ld~~g~  293 (405)
                      +.+.|.
T Consensus        81 i~~ag~   86 (239)
T TIGR01830        81 VNNAGI   86 (239)
T ss_pred             EECCCC
Confidence            998884

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=94.76  E-value=0.31  Score=42.94  Aligned_cols=35  Identities=26%  Similarity=0.223  Sum_probs=30.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      ...+|+|.|+ |++|..+++.+...|...+.+++.+
T Consensus        20 ~~~~VlviG~-GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGA-GGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEecCC
Confidence            4578999999 9999999999999999888877654

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=94.71  E-value=0.24  Score=43.95  Aligned_cols=101  Identities=21%  Similarity=0.219  Sum_probs=59.8

Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHH-HhhhcCCCCC
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRN-ISRDASIPKP  284 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~-i~~~t~g~g~  284 (405)
                      ...+++++++||-.|+  |.|..+..+++.. .+++++-.+++..+...+.+...|.+.+ +...|... ..   ....+
T Consensus        72 ~~l~~~~~~~VLeiG~--GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---~~~~f  145 (212)
T PRK00312         72 ELLELKPGDRVLEIGT--GSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP---AYAPF  145 (212)
T ss_pred             HhcCCCCCCEEEEECC--CccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC---cCCCc
Confidence            3467889999999998  4466666666664 4666665443333333344445555432 11122111 11   12468


Q ss_pred             cEEEECCCchhH-HHHHHhcccCCEEEEEe
Q psy2960         285 KLALNCVGGNSA-TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       285 Dvvld~~g~~~~-~~~~~~l~~~G~~v~~g  313 (405)
                      |+|+-...-... ....+.|+++|+++..-
T Consensus       146 D~I~~~~~~~~~~~~l~~~L~~gG~lv~~~  175 (212)
T PRK00312        146 DRILVTAAAPEIPRALLEQLKEGGILVAPV  175 (212)
T ss_pred             CEEEEccCchhhhHHHHHhcCCCcEEEEEE
Confidence            998865544444 34579999999988754

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=94.71  E-value=0.2  Score=45.10  Aligned_cols=76  Identities=17%  Similarity=0.202  Sum_probs=47.2

Q ss_pred             EEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc-chHHHHHHHHHcCCcE-E--eChh---hHHH-Hhhh-cCCCCCcEE
Q psy2960         217 VIQNGANSACGQNVIQIARHWGLKTINIVRNRD-DIDKLKSYLKSLGADY-V--FTEE---ELRN-ISRD-ASIPKPKLA  287 (405)
Q Consensus       217 VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~-~~~~~~~~~~~lg~~~-v--~~~~---d~~~-i~~~-t~g~g~Dvv  287 (405)
                      |||.|++|++|...++.+...|++++.+.++.+ ..+...+.+++.+.+. +  .|-.   +... +.+. .....+|.+
T Consensus         1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~l   80 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAYYGV   80 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            689999999999999999999999988876533 2223334444445322 1  2322   2222 2221 113468999


Q ss_pred             EECCC
Q psy2960         288 LNCVG  292 (405)
Q Consensus       288 ld~~g  292 (405)
                      +.+.|
T Consensus        81 i~~ag   85 (239)
T TIGR01831        81 VLNAG   85 (239)
T ss_pred             EECCC
Confidence            98876

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=94.70  E-value=0.089  Score=50.34  Aligned_cols=36  Identities=19%  Similarity=0.329  Sum_probs=32.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      ++.+|||.||+|.+|...++.+...|.+|+++.++.
T Consensus         5 ~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~   40 (340)
T PLN02653          5 PRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRS   40 (340)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeccc
Confidence            468999999999999999999999999999987653

>PLN02244 tocopherol O-methyltransferase

Probab=94.69  E-value=0.17  Score=48.51  Aligned_cols=98  Identities=15%  Similarity=0.183  Sum_probs=60.8

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc-EE-eChhhHHHHhhhcCCCCCcEEEE
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YV-FTEEELRNISRDASIPKPKLALN  289 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~-~v-~~~~d~~~i~~~t~g~g~Dvvld  289 (405)
                      +++++||=.|+  |.|..+..+++..|++++++.-+++..+...+.+...|.. .+ +-..|...+.  .....+|+|+.
T Consensus       117 ~~~~~VLDiGC--G~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~--~~~~~FD~V~s  192 (340)
T PLN02244        117 KRPKRIVDVGC--GIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP--FEDGQFDLVWS  192 (340)
T ss_pred             CCCCeEEEecC--CCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC--CCCCCccEEEE
Confidence            78999999998  5688888999988999998875544333333334444432 11 1111211110  11346899986


Q ss_pred             CCCc-------hhHHHHHHhcccCCEEEEEe
Q psy2960         290 CVGG-------NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       290 ~~g~-------~~~~~~~~~l~~~G~~v~~g  313 (405)
                      ....       ..+.+..+.|+|||+++...
T Consensus       193 ~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~  223 (340)
T PLN02244        193 MESGEHMPDKRKFVQELARVAAPGGRIIIVT  223 (340)
T ss_pred             CCchhccCCHHHHHHHHHHHcCCCcEEEEEE
Confidence            4432       23345679999999998865

>PLN02928 oxidoreductase family protein

Probab=94.67  E-value=0.14  Score=49.11  Aligned_cols=93  Identities=15%  Similarity=0.195  Sum_probs=56.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHH-----HHHHHcCCcEEeChhhHHH-HhhhcCCCCCcE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK-----SYLKSLGADYVFTEEELRN-ISRDASIPKPKL  286 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~-----~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~Dv  286 (405)
                      .|.+|+|.|. |.+|..+++.++.+|++|++..++........     .....+.. ......++++ +.      ..|+
T Consensus       158 ~gktvGIiG~-G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~ell~------~aDi  229 (347)
T PLN02928        158 FGKTVFILGY-GAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVD-EKGGHEDIYEFAG------EADI  229 (347)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhcccccccccccc-ccCcccCHHHHHh------hCCE
Confidence            5899999999 99999999999999999988865422100000     00000000 0011223333 22      3588


Q ss_pred             EEECCCch-h----H-HHHHHhcccCCEEEEEe
Q psy2960         287 ALNCVGGN-S----A-TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       287 vld~~g~~-~----~-~~~~~~l~~~G~~v~~g  313 (405)
                      |+.++... .    + ...+..|+++..||.++
T Consensus       230 Vvl~lPlt~~T~~li~~~~l~~Mk~ga~lINva  262 (347)
T PLN02928        230 VVLCCTLTKETAGIVNDEFLSSMKKGALLVNIA  262 (347)
T ss_pred             EEECCCCChHhhcccCHHHHhcCCCCeEEEECC
Confidence            88877631 1    1 23578888888888776

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=94.65  E-value=0.13  Score=50.16  Aligned_cols=89  Identities=15%  Similarity=0.191  Sum_probs=49.4

Q ss_pred             EEEeCCCcHHHHHHHHHHHHcCC--cEEEEecCCcchHHHHHHHH-H-cC--Cc-EEeChhhHHHHhhhcCCCCCcEEEE
Q psy2960         217 VIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLK-S-LG--AD-YVFTEEELRNISRDASIPKPKLALN  289 (405)
Q Consensus       217 VLI~ga~G~vG~~aiqla~~~G~--~v~~~~~~~~~~~~~~~~~~-~-lg--~~-~v~~~~d~~~i~~~t~g~g~Dvvld  289 (405)
                      |+|.|+ |.+|..+++.+...+-  +++++.++.+    +.+.+. + .+  .. ..+|..|.+++.++.  .+.|+|||
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~----~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~--~~~dvVin   73 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPE----KAERLAEKLLGDRVEAVQVDVNDPESLAELL--RGCDVVIN   73 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHH----HHHHHHT--TTTTEEEEE--TTTHHHHHHHH--TTSSEEEE
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHH----HHHHHHhhccccceeEEEEecCCHHHHHHHH--hcCCEEEE
Confidence            789999 9999999999887764  4555544432    222222 2 22  22 223444433344442  34599999


Q ss_pred             CCCchhHHHHH-HhcccCCEEEEE
Q psy2960         290 CVGGNSATNLL-RTLVSKGVMVTY  312 (405)
Q Consensus       290 ~~g~~~~~~~~-~~l~~~G~~v~~  312 (405)
                      |+|.......+ .|+..+-.++..
T Consensus        74 ~~gp~~~~~v~~~~i~~g~~yvD~   97 (386)
T PF03435_consen   74 CAGPFFGEPVARACIEAGVHYVDT   97 (386)
T ss_dssp             -SSGGGHHHHHHHHHHHT-EEEES
T ss_pred             CCccchhHHHHHHHHHhCCCeecc
Confidence            99977554444 566667777773

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=94.61  E-value=0.25  Score=44.44  Aligned_cols=34  Identities=15%  Similarity=0.224  Sum_probs=30.2

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      ++|||.|++|++|..+++.....|++|+.+.++.
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~   36 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLNDGYRVIATYFSG   36 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCc
Confidence            4799999999999999998888899999988664

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.60  E-value=0.38  Score=44.49  Aligned_cols=94  Identities=17%  Similarity=0.191  Sum_probs=67.8

Q ss_pred             ccCCCcHHHHHHHHHhhcCCC-CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChh
Q psy2960         192 SGITSNPCTAYRMLKDYNSLS-PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE  270 (405)
Q Consensus       192 a~~~~~~~ta~~al~~~~~~~-~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~  270 (405)
                      +.+||+....+..|.. -++. .|.+|+|.|.+.-||.-.+.++...||+|.+.- +..                    .
T Consensus       135 ~~~PcTp~avi~lL~~-~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~h-s~t--------------------~  192 (285)
T PRK14191        135 GFVPATPMGVMRLLKH-YHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCH-ILT--------------------K  192 (285)
T ss_pred             CCCCCcHHHHHHHHHH-hCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEe-CCc--------------------H
Confidence            4567777766666654 3543 699999999988999999999999999987652 211                    1


Q ss_pred             hHHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEec
Q psy2960         271 ELRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       271 d~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~  314 (405)
                      +..+ ++      ..|+|+-++|.+.+.. -+.+++|..++.+|.
T Consensus       193 ~l~~~~~------~ADIvV~AvG~p~~i~-~~~vk~GavVIDvGi  230 (285)
T PRK14191        193 DLSFYTQ------NADIVCVGVGKPDLIK-ASMVKKGAVVVDIGI  230 (285)
T ss_pred             HHHHHHH------hCCEEEEecCCCCcCC-HHHcCCCcEEEEeec
Confidence            1112 22      3599999999876632 356799999999984

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=94.55  E-value=0.27  Score=43.76  Aligned_cols=97  Identities=10%  Similarity=0.016  Sum_probs=57.6

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHH-HHcCCcEEe---------ChhhH---HH-Hh
Q psy2960         211 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVF---------TEEEL---RN-IS  276 (405)
Q Consensus       211 ~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~-~~lg~~~v~---------~~~d~---~~-i~  276 (405)
                      +.+|.+||+.|+  |.|.-++.+|. .|.+|+++--++..    ++.+ .+.+.....         ...+.   .. +.
T Consensus        32 ~~~~~rvLd~GC--G~G~da~~LA~-~G~~V~gvD~S~~A----i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~  104 (213)
T TIGR03840        32 LPAGARVFVPLC--GKSLDLAWLAE-QGHRVLGVELSEIA----VEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFF  104 (213)
T ss_pred             CCCCCeEEEeCC--CchhHHHHHHh-CCCeEEEEeCCHHH----HHHHHHHcCCCcceeccccceeeecCceEEEEccCC
Confidence            357889999999  67899999985 69999999654433    3332 223321100         00000   00 11


Q ss_pred             hhc--CCCCCcEEEECCCc---------hhHHHHHHhcccCCEEEEEec
Q psy2960         277 RDA--SIPKPKLALNCVGG---------NSATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       277 ~~t--~g~g~Dvvld~~g~---------~~~~~~~~~l~~~G~~v~~g~  314 (405)
                      +..  ....+|.|+|+..-         ..+....++|+|+|+++.++.
T Consensus       105 ~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~  153 (213)
T TIGR03840       105 ALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITL  153 (213)
T ss_pred             CCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEE
Confidence            111  12358999997531         123456799999999777763

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PLN02214 cinnamoyl-CoA reductase

Probab=94.55  E-value=0.16  Score=48.82  Aligned_cols=80  Identities=15%  Similarity=0.137  Sum_probs=49.6

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHH-HHHHHHHcCCc-EEe--ChhhHHHHhhhcCCCCCcEE
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDK-LKSYLKSLGAD-YVF--TEEELRNISRDASIPKPKLA  287 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~-~~~~~~~lg~~-~v~--~~~d~~~i~~~t~g~g~Dvv  287 (405)
                      .++.+|||.||+|.+|...+..+...|.+|++++++.+.... .+..+...+.. .++  |-.+...+.+..  .++|+|
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--~~~d~V   85 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAI--DGCDGV   85 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHH--hcCCEE
Confidence            357899999999999999999999999999999876543111 11111111111 112  323322233222  258999


Q ss_pred             EECCCc
Q psy2960         288 LNCVGG  293 (405)
Q Consensus       288 ld~~g~  293 (405)
                      |.+.+.
T Consensus        86 ih~A~~   91 (342)
T PLN02214         86 FHTASP   91 (342)
T ss_pred             EEecCC
Confidence            999863

>PLN00015 protochlorophyllide reductase

Probab=94.54  E-value=0.16  Score=47.99  Aligned_cols=76  Identities=13%  Similarity=0.073  Sum_probs=45.2

Q ss_pred             EEeCCCcHHHHHHHHHHHHcC-CcEEEEecCCcchHHHHHHHHHcCCcE---EeChhh---HHH-Hhhhc-CCCCCcEEE
Q psy2960         218 IQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGADY---VFTEEE---LRN-ISRDA-SIPKPKLAL  288 (405)
Q Consensus       218 LI~ga~G~vG~~aiqla~~~G-~~v~~~~~~~~~~~~~~~~~~~lg~~~---v~~~~d---~~~-i~~~t-~g~g~Dvvl  288 (405)
                      ||.|+++|+|.++++.+...| ++|+.+.++.++.+...+.+...+...   ..|-.+   ... +.+.. ...++|++|
T Consensus         1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~lI   80 (308)
T PLN00015          1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVLV   80 (308)
T ss_pred             CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence            589999999999998888899 899888766443222222221112111   123222   222 22221 135689999


Q ss_pred             ECCCc
Q psy2960         289 NCVGG  293 (405)
Q Consensus       289 d~~g~  293 (405)
                      ++.|.
T Consensus        81 nnAG~   85 (308)
T PLN00015         81 CNAAV   85 (308)
T ss_pred             ECCCc
Confidence            98873

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=94.52  E-value=0.48  Score=39.48  Aligned_cols=94  Identities=17%  Similarity=0.154  Sum_probs=56.3

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcC-CcEEEEecCCcchHHHHHHHHHcCCcE-EeChhhHHHHhhhcCCCCCcEEEE
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGADY-VFTEEELRNISRDASIPKPKLALN  289 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G-~~v~~~~~~~~~~~~~~~~~~~lg~~~-v~~~~d~~~i~~~t~g~g~Dvvld  289 (405)
                      ..+.+|+|.|+ |++|...++.+...| .+++++.++.+.   ..+.+.+++... .....+..+.     -.++|+|+.
T Consensus        17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~~Dvvi~   87 (155)
T cd01065          17 LKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEK---AKALAERFGELGIAIAYLDLEEL-----LAEADLIIN   87 (155)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHH---HHHHHHHHhhcccceeecchhhc-----cccCCEEEe
Confidence            45789999998 999999999988887 455555443322   233344554321 0111122221     246899999


Q ss_pred             CCCchhH-----HHHHHhcccCCEEEEEec
Q psy2960         290 CVGGNSA-----TNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       290 ~~g~~~~-----~~~~~~l~~~G~~v~~g~  314 (405)
                      |++....     ......++++..++.++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~v~D~~~  117 (155)
T cd01065          88 TTPVGMKPGDELPLPPSLLKPGGVVYDVVY  117 (155)
T ss_pred             CcCCCCCCCCCCCCCHHHcCCCCEEEEcCc
Confidence            9987542     112345667777777653

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=94.52  E-value=0.12  Score=49.61  Aligned_cols=78  Identities=8%  Similarity=0.104  Sum_probs=46.0

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc--CCc--E-EeChhhHHHHhhhcCCCCCcEEEE
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL--GAD--Y-VFTEEELRNISRDASIPKPKLALN  289 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l--g~~--~-v~~~~d~~~i~~~t~g~g~Dvvld  289 (405)
                      .+|||.||+|.+|...++.+...|.+++++++..+.... ......+  +..  . ..|-.|...+.+.....++|+||+
T Consensus         2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih   80 (355)
T PRK10217          2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGN-LMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMH   80 (355)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccc-hhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEEE
Confidence            379999999999999999999999987766543322111 1111111  111  1 123333222333322346899999


Q ss_pred             CCCc
Q psy2960         290 CVGG  293 (405)
Q Consensus       290 ~~g~  293 (405)
                      +.|.
T Consensus        81 ~A~~   84 (355)
T PRK10217         81 LAAE   84 (355)
T ss_pred             CCcc
Confidence            9863

>PLN02366 spermidine synthase

Probab=94.47  E-value=0.49  Score=44.58  Aligned_cols=96  Identities=19%  Similarity=0.157  Sum_probs=55.3

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH----cC----CcEE-eChhhHHH-HhhhcCC
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS----LG----ADYV-FTEEELRN-ISRDASI  281 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~----lg----~~~v-~~~~d~~~-i~~~t~g  281 (405)
                      ...++|||.|+ |. |..+..++++-+...+.++.-+   +.-.+.+++    .+    ..++ +-..|... +.+ +.+
T Consensus        90 ~~pkrVLiIGg-G~-G~~~rellk~~~v~~V~~VEiD---~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~-~~~  163 (308)
T PLN02366         90 PNPKKVLVVGG-GD-GGVLREIARHSSVEQIDICEID---KMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN-APE  163 (308)
T ss_pred             CCCCeEEEEcC-Cc-cHHHHHHHhCCCCCeEEEEECC---HHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhh-ccC
Confidence            45789999998 33 6778888888777667776333   222344333    21    0111 11123222 332 224


Q ss_pred             CCCcEEEECCCc-----------hhHHHHHHhcccCCEEEEEe
Q psy2960         282 PKPKLALNCVGG-----------NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       282 ~g~Dvvld~~g~-----------~~~~~~~~~l~~~G~~v~~g  313 (405)
                      ..+|+||--...           +....+.++|+++|.++.-+
T Consensus       164 ~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~  206 (308)
T PLN02366        164 GTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA  206 (308)
T ss_pred             CCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence            569998853322           23445678999999997644

>TIGR00477 tehB tellurite resistance protein TehB

Probab=94.43  E-value=0.33  Score=42.54  Aligned_cols=99  Identities=9%  Similarity=0.004  Sum_probs=55.9

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEE
Q psy2960         209 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLAL  288 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvl  288 (405)
                      ....++.+||-.|+  |.|..+..+|+ .|++|+++--+++..+...+.+...+........|.... ..  ...+|+|+
T Consensus        26 ~~~~~~~~vLDiGc--G~G~~a~~la~-~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~-~~--~~~fD~I~   99 (195)
T TIGR00477        26 VKTVAPCKTLDLGC--GQGRNSLYLSL-AGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAA-AL--NEDYDFIF   99 (195)
T ss_pred             hccCCCCcEEEeCC--CCCHHHHHHHH-CCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhc-cc--cCCCCEEE
Confidence            34556679999998  66888888887 588888885444332222233333333211111121110 11  23689998


Q ss_pred             ECCC-----c----hhHHHHHHhcccCCEEEEEe
Q psy2960         289 NCVG-----G----NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       289 d~~g-----~----~~~~~~~~~l~~~G~~v~~g  313 (405)
                      .+.-     .    ..+....+.|+|+|.++.+.
T Consensus       100 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~  133 (195)
T TIGR00477       100 STVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVA  133 (195)
T ss_pred             EecccccCCHHHHHHHHHHHHHHhCCCcEEEEEE
Confidence            6532     1    12234568899999966554

Part of a tellurite-reducing operon tehA and tehB

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=94.41  E-value=1.4  Score=40.77  Aligned_cols=148  Identities=15%  Similarity=0.166  Sum_probs=89.5

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeC-------------hhhHHH--
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT-------------EEELRN--  274 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~-------------~~d~~~--  274 (405)
                      +--++.+|++.|+ |-+|++++..++..|+-|...    +-+.++.+..+++|+...--             +.++..  
T Consensus       160 gtv~pA~vlv~G~-Gvagl~aiata~~lG~iVt~r----dlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q  234 (356)
T COG3288         160 GTVSPAKVLVIGA-GVAGLAAIATAVRLGAIVTAR----DLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQ  234 (356)
T ss_pred             ccccchhhhhhhH-HHHHHHHHHHHhhcceEEehh----hhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHH
Confidence            4456788999999 999999999999999855443    34455566667777754321             122211  


Q ss_pred             ---HhhhcCCCCCcEEEECC---Cc--hh--HHHHHHhcccCCEEEEEeccCCCCcc--cCcccccccCeEEEEEec-ch
Q psy2960         275 ---ISRDASIPKPKLALNCV---GG--NS--ATNLLRTLVSKGVMVTYGGMSREPVQ--IPTSAFIFKDITLRGHWM-TR  341 (405)
Q Consensus       275 ---i~~~t~g~g~Dvvld~~---g~--~~--~~~~~~~l~~~G~~v~~g~~~~~~~~--~~~~~~~~k~~~~~g~~~-~~  341 (405)
                         +.+.  -.++|+||-+.   |.  +.  ..+.++.|+||..++.+..-.+.+..  .+..-....++++.|..- ..
T Consensus       235 ~~~~a~~--~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpGSViVDlAa~~GGNce~t~pg~~v~~~gV~iig~~nlp~  312 (356)
T COG3288         235 AELVAEQ--AKEVDIVITTALIPGRPAPKLVTAEMVASMKPGSVIVDLAAETGGNCELTEPGKVVTKNGVKIIGYTNLPG  312 (356)
T ss_pred             HHHHHHH--hcCCCEEEEecccCCCCCchhhHHHHHHhcCCCcEEEEehhhcCCCcccccCCeEEEeCCeEEEeecCcch
Confidence               2222  46789999876   22  22  23568999999999999865444433  233334457788888542 11


Q ss_pred             hhhhhccHHHHHHHHHHHHHHHHc
Q psy2960         342 WQKENKESAERKSMMNELTEMMRT  365 (405)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~  365 (405)
                      ....+. ...+.+.+-.+++++-+
T Consensus       313 r~a~~a-S~LYa~Nl~~~l~ll~~  335 (356)
T COG3288         313 RLAAQA-SQLYATNLVNLLKLLCK  335 (356)
T ss_pred             hhhhhH-HHHHHHHHHHHHHHHhc
Confidence            111111 13444555555555443

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.39  E-value=0.21  Score=49.88  Aligned_cols=74  Identities=22%  Similarity=0.292  Sum_probs=48.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC-cchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR-DDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~-~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                      .+.+|+|.|+ |++|++++..+...|++|+++.... +..++..+.+.++|...+.... ..+.     ..++|+|+.+.
T Consensus         4 ~~k~v~iiG~-g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~-----~~~~d~vv~~~   76 (450)
T PRK14106          4 KGKKVLVVGA-GVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEY-PEEF-----LEGVDLVVVSP   76 (450)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCc-chhH-----hhcCCEEEECC
Confidence            4789999999 6799999999999999988876543 1222233445566665332111 1111     23589999998


Q ss_pred             Cc
Q psy2960         292 GG  293 (405)
Q Consensus       292 g~  293 (405)
                      |.
T Consensus        77 g~   78 (450)
T PRK14106         77 GV   78 (450)
T ss_pred             CC
Confidence            84

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=94.38  E-value=0.29  Score=47.53  Aligned_cols=75  Identities=11%  Similarity=0.043  Sum_probs=47.7

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEEEC
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALNC  290 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld~  290 (405)
                      ..+.+|||.|++|-+|...+..+...|.+|+++.+..+..   ... ..++...+ .|-.+...+....  .++|+||.+
T Consensus        19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~---~~~-~~~~~~~~~~Dl~d~~~~~~~~--~~~D~Vih~   92 (370)
T PLN02695         19 SEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEH---MSE-DMFCHEFHLVDLRVMENCLKVT--KGVDHVFNL   92 (370)
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccc---ccc-ccccceEEECCCCCHHHHHHHH--hCCCEEEEc
Confidence            4678999999999999999999999999999987543210   110 01122211 2333333232221  368999999


Q ss_pred             CC
Q psy2960         291 VG  292 (405)
Q Consensus       291 ~g  292 (405)
                      .+
T Consensus        93 Aa   94 (370)
T PLN02695         93 AA   94 (370)
T ss_pred             cc
Confidence            85

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=94.37  E-value=0.17  Score=40.56  Aligned_cols=93  Identities=13%  Similarity=0.204  Sum_probs=55.3

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHH-c-CC-cEEeChhhHHHHhhhcCCCCCcEEEECC
Q psy2960         216 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKS-L-GA-DYVFTEEELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~-l-g~-~~v~~~~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                      +|.|.|++|-+|...++++... .++.+.++++.......+..... . +. +..+...+.+.+      ..+|+||.|+
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~Dvvf~a~   74 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEEL------SDVDVVFLAL   74 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHH------TTESEEEE-S
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHh------hcCCEEEecC
Confidence            6899999999999999887664 66777777655411111222211 1 11 112211111112      4689999999


Q ss_pred             CchhHHHHH-HhcccCCEEEEEec
Q psy2960         292 GGNSATNLL-RTLVSKGVMVTYGG  314 (405)
Q Consensus       292 g~~~~~~~~-~~l~~~G~~v~~g~  314 (405)
                      +.....+.. ..+.++-+++..+.
T Consensus        75 ~~~~~~~~~~~~~~~g~~ViD~s~   98 (121)
T PF01118_consen   75 PHGASKELAPKLLKAGIKVIDLSG   98 (121)
T ss_dssp             CHHHHHHHHHHHHHTTSEEEESSS
T ss_pred             chhHHHHHHHHHhhCCcEEEeCCH
Confidence            998777665 44566667777653

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=94.32  E-value=0.043  Score=50.38  Aligned_cols=37  Identities=19%  Similarity=0.316  Sum_probs=32.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD  249 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~  249 (405)
                      .+.++||.|++|++|.+.++.+...|++|+.+.++.+
T Consensus         8 ~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~   44 (266)
T PRK06171          8 QGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGG   44 (266)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4789999999999999999999999999988875543

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=94.31  E-value=0.16  Score=47.86  Aligned_cols=78  Identities=9%  Similarity=0.054  Sum_probs=45.0

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcC-CcEE-eChhhHHHHhhhcCCCCCcEEEECCCc
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG-ADYV-FTEEELRNISRDASIPKPKLALNCVGG  293 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg-~~~v-~~~~d~~~i~~~t~g~g~Dvvld~~g~  293 (405)
                      +|||.||+|.+|...++.+...|.+|+++.+...............+ ...+ .|..+...+.+.....++|+|+++.|.
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~ag~   80 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIHFAGL   80 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhccccceEEEECCCCCHHHHHHHHHhCCCcEEEECccc
Confidence            58999999999999999998899998876432221111222211111 1111 232222222222223478999999873

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.30  E-value=0.57  Score=38.59  Aligned_cols=94  Identities=7%  Similarity=0.050  Sum_probs=65.6

Q ss_pred             ccCCCcHHHHHHHHHhhcCC-CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChh
Q psy2960         192 SGITSNPCTAYRMLKDYNSL-SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE  270 (405)
Q Consensus       192 a~~~~~~~ta~~al~~~~~~-~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~  270 (405)
                      ..+|+........+... ++ -.|++|+|+|.+..+|.-++.++...|+++..+-+.. +                    
T Consensus         6 ~~~p~t~~a~~~ll~~~-~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t-~--------------------   63 (140)
T cd05212           6 LFVSPVAKAVKELLNKE-GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT-I--------------------   63 (140)
T ss_pred             cccccHHHHHHHHHHHc-CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC-c--------------------
Confidence            35565655555555543 43 3799999999999999999999999999887774221 1                    


Q ss_pred             hHHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEec
Q psy2960         271 ELRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       271 d~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~  314 (405)
                      +..+ +      +..|+|+-++|..... --+.+++|-.++.+|.
T Consensus        64 ~l~~~v------~~ADIVvsAtg~~~~i-~~~~ikpGa~Vidvg~  101 (140)
T cd05212          64 QLQSKV------HDADVVVVGSPKPEKV-PTEWIKPGATVINCSP  101 (140)
T ss_pred             CHHHHH------hhCCEEEEecCCCCcc-CHHHcCCCCEEEEcCC
Confidence            1111 2      2469999999987432 1466899988887773

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=94.30  E-value=0.39  Score=41.46  Aligned_cols=49  Identities=16%  Similarity=0.246  Sum_probs=33.9

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC-c---chHHHHHHHHHcCCc
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNR-D---DIDKLKSYLKSLGAD  264 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~-~---~~~~~~~~~~~lg~~  264 (405)
                      ++||.|+.|++|+..++.+...|+..++.++.. .   .....++.+++.|..
T Consensus         2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~   54 (181)
T PF08659_consen    2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGAR   54 (181)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-E
T ss_pred             EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCc
Confidence            689999999999999998888887655555443 1   223456666677764

It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=94.28  E-value=0.18  Score=50.72  Aligned_cols=79  Identities=16%  Similarity=0.243  Sum_probs=55.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc-----------------chHHHHHHHHHcCCcEEeChhhHHH-
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD-----------------DIDKLKSYLKSLGADYVFTEEELRN-  274 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~-----------------~~~~~~~~~~~lg~~~v~~~~d~~~-  274 (405)
                      .+++|+|.|+ |+.|+.++..++..|.+|++.-....                 ..+...+.++++|.+..++..-... 
T Consensus       140 ~~~~V~IIG~-GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~  218 (467)
T TIGR01318       140 TGKRVAVIGA-GPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDI  218 (467)
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCcc
Confidence            6899999999 99999999999999999876643221                 0123467788899877666421111 


Q ss_pred             -HhhhcCCCCCcEEEECCCch
Q psy2960         275 -ISRDASIPKPKLALNCVGGN  294 (405)
Q Consensus       275 -i~~~t~g~g~Dvvld~~g~~  294 (405)
                       +...+  .++|.||.++|..
T Consensus       219 ~~~~~~--~~~D~vilAtGa~  237 (467)
T TIGR01318       219 SLDDLL--EDYDAVFLGVGTY  237 (467)
T ss_pred             CHHHHH--hcCCEEEEEeCCC
Confidence             22222  3689999999964

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=94.28  E-value=0.5  Score=43.72  Aligned_cols=77  Identities=17%  Similarity=0.218  Sum_probs=46.9

Q ss_pred             HHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhc
Q psy2960         201 AYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDA  279 (405)
Q Consensus       201 a~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t  279 (405)
                      .+.+|.. .+...+++|+|.|+ ||.+.+++..+..+|+. ++++.++.++.   .+.+..++.+    ..  ..+.   
T Consensus       110 f~~~L~~-~~~~~~~~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~~a---~~la~~~~~~----~~--~~~~---  175 (272)
T PRK12550        110 IAKLLAS-YQVPPDLVVALRGS-GGMAKAVAAALRDAGFTDGTIVARNEKTG---KALAELYGYE----WR--PDLG---  175 (272)
T ss_pred             HHHHHHh-cCCCCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHH---HHHHHHhCCc----ch--hhcc---
Confidence            3444544 34455679999999 99999999999999997 44554443322   2233334321    10  0011   


Q ss_pred             CCCCCcEEEECCC
Q psy2960         280 SIPKPKLALNCVG  292 (405)
Q Consensus       280 ~g~g~Dvvld~~g  292 (405)
                       ...+|+||||+.
T Consensus       176 -~~~~dlvINaTp  187 (272)
T PRK12550        176 -GIEADILVNVTP  187 (272)
T ss_pred             -cccCCEEEECCc
Confidence             235799999985

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=94.28  E-value=0.65  Score=41.51  Aligned_cols=103  Identities=12%  Similarity=0.118  Sum_probs=61.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcc-----hHHHHHHHHHcC---------------C-cEEeChhh
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-----IDKLKSYLKSLG---------------A-DYVFTEEE  271 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~-----~~~~~~~~~~lg---------------~-~~v~~~~d  271 (405)
                      ..++|+|.|. ||||.+++..+-..|+..+..++-++-     .+.........|               . -+|.-.++
T Consensus        29 ~~~~V~VvGi-GGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~  107 (263)
T COG1179          29 KQAHVCVVGI-GGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAIND  107 (263)
T ss_pred             hhCcEEEEec-CchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHh
Confidence            4578999999 999999999999999988887643321     111222211222               1 11211223


Q ss_pred             H--HH-HhhhcCCCCCcEEEECCCchhHHHH-HH-hcccCCEEEEEeccCC
Q psy2960         272 L--RN-ISRDASIPKPKLALNCVGGNSATNL-LR-TLVSKGVMVTYGGMSR  317 (405)
Q Consensus       272 ~--~~-i~~~t~g~g~Dvvld~~g~~~~~~~-~~-~l~~~G~~v~~g~~~~  317 (405)
                      +  ++ +.++. ..++|+|+||...-....+ +. |.+.+=.++..++..+
T Consensus       108 f~t~en~~~~~-~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Gag~  157 (263)
T COG1179         108 FITEENLEDLL-SKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGAGG  157 (263)
T ss_pred             hhCHhHHHHHh-cCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccccC
Confidence            2  22 44444 3489999999987665533 33 5555556777765443

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=94.27  E-value=0.28  Score=44.57  Aligned_cols=104  Identities=14%  Similarity=0.213  Sum_probs=61.7

Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC--cEEEEecCCcchHHHHHHHHHcCCc--EEeChhhHHH--HhhhcC
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLGAD--YVFTEEELRN--ISRDAS  280 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~--~v~~~~~~~~~~~~~~~~~~~lg~~--~v~~~~d~~~--i~~~t~  280 (405)
                      ...+++||++|+=.|.  |.|.++..+|+..|.  +|+..-..++..+...+.++..|.+  ..+..+|..+  ..+.. 
T Consensus        34 ~~l~i~pG~~VlEaGt--GSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~-  110 (247)
T PF08704_consen   34 MRLDIRPGSRVLEAGT--GSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEEL-  110 (247)
T ss_dssp             HHTT--TT-EEEEE----TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT--
T ss_pred             HHcCCCCCCEEEEecC--CcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccc-
Confidence            4479999999988776  568999999998874  5666543333333334455566653  2244455432  21111 


Q ss_pred             CCCCcEEEECCCc--hhHHHHHHhc-ccCCEEEEEe
Q psy2960         281 IPKPKLALNCVGG--NSATNLLRTL-VSKGVMVTYG  313 (405)
Q Consensus       281 g~g~Dvvld~~g~--~~~~~~~~~l-~~~G~~v~~g  313 (405)
                      ...+|.||==+..  +.+..+.+.| +++|+++.+.
T Consensus       111 ~~~~DavfLDlp~Pw~~i~~~~~~L~~~gG~i~~fs  146 (247)
T PF08704_consen  111 ESDFDAVFLDLPDPWEAIPHAKRALKKPGGRICCFS  146 (247)
T ss_dssp             TTSEEEEEEESSSGGGGHHHHHHHE-EEEEEEEEEE
T ss_pred             cCcccEEEEeCCCHHHHHHHHHHHHhcCCceEEEEC
Confidence            2467887654544  4567788999 8999999986

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK07041 short chain dehydrogenase; Provisional

Probab=94.26  E-value=0.18  Score=44.97  Aligned_cols=73  Identities=14%  Similarity=0.064  Sum_probs=45.1

Q ss_pred             EEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc-EEe--ChhhH---HHHhhhcCCCCCcEEEECC
Q psy2960         218 IQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YVF--TEEEL---RNISRDASIPKPKLALNCV  291 (405)
Q Consensus       218 LI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~-~v~--~~~d~---~~i~~~t~g~g~Dvvld~~  291 (405)
                      ||.|++|++|.+.++.+...|++++.+.++.+..+...+..+ .+.. +++  |..+.   ..+.+.  -+.+|+++++.
T Consensus         1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~~~~~~~~--~~~id~li~~a   77 (230)
T PRK07041          1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALG-GGAPVRTAALDITDEAAVDAFFAE--AGPFDHVVITA   77 (230)
T ss_pred             CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh-cCCceEEEEccCCCHHHHHHHHHh--cCCCCEEEECC
Confidence            589999999999999998999999888876443222222221 1221 222  33332   222222  24689999998


Q ss_pred             Cc
Q psy2960         292 GG  293 (405)
Q Consensus       292 g~  293 (405)
                      |.
T Consensus        78 g~   79 (230)
T PRK07041         78 AD   79 (230)
T ss_pred             CC
Confidence            73

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=94.24  E-value=0.31  Score=45.30  Aligned_cols=64  Identities=22%  Similarity=0.339  Sum_probs=51.5

Q ss_pred             HHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeC
Q psy2960         202 YRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT  268 (405)
Q Consensus       202 ~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~  268 (405)
                      ..+..+ +.++||+ .+|-+.+|..|.+.+.+|+.+|++.+.+.-. ....++.+.++.+|++.+..
T Consensus        51 ~~Ae~~-G~l~pG~-tIVE~TSGNTGI~LA~vaa~~Gy~~iivmP~-~~S~er~~~l~a~GAevi~t  114 (300)
T COG0031          51 EDAEKR-GLLKPGG-TIVEATSGNTGIALAMVAAAKGYRLIIVMPE-TMSQERRKLLRALGAEVILT  114 (300)
T ss_pred             HHHHHc-CCCCCCC-EEEEcCCChHHHHHHHHHHHcCCcEEEEeCC-CCCHHHHHHHHHcCCEEEEc
Confidence            344433 7799999 5678888999999999999999999888843 45678889999999987764

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=94.22  E-value=0.25  Score=47.46  Aligned_cols=48  Identities=17%  Similarity=0.154  Sum_probs=38.9

Q ss_pred             HHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         200 TAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       200 ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      |||.-++....+ ++.+|||.||+|-+|...+..+...|.+|+++.+..
T Consensus         2 ~~~~~~~~~~~~-~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~   49 (348)
T PRK15181          2 TAYEELRTKLVL-APKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS   49 (348)
T ss_pred             chhhhhhhcccc-cCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            567766654444 457999999999999999999999999999887643

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=94.05  E-value=0.18  Score=47.36  Aligned_cols=33  Identities=24%  Similarity=0.427  Sum_probs=28.9

Q ss_pred             EEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc
Q psy2960         217 VIQNGANSACGQNVIQIARHWGLKTINIVRNRD  249 (405)
Q Consensus       217 VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~  249 (405)
                      |||.||+|-+|...++.+...|.++++++++.+
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~   34 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLK   34 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCCceEEEecCCC
Confidence            799999999999999999889998888876543

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=94.04  E-value=0.34  Score=44.20  Aligned_cols=44  Identities=23%  Similarity=0.313  Sum_probs=31.3

Q ss_pred             EEEEeCCCcHHHHHHHHHHHH----cCCcEEEEecCCcchHHHHHHHH
Q psy2960         216 VVIQNGANSACGQNVIQIARH----WGLKTINIVRNRDDIDKLKSYLK  259 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~----~G~~v~~~~~~~~~~~~~~~~~~  259 (405)
                      .+||.|+++++|.+.+..+..    .|++|+.+.++.+..++..+.++
T Consensus         2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~   49 (256)
T TIGR01500         2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIG   49 (256)
T ss_pred             EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHH
Confidence            589999999999987765443    79999998876554433333333

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=93.98  E-value=0.74  Score=40.50  Aligned_cols=79  Identities=20%  Similarity=0.225  Sum_probs=50.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHH-HHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSY-LKSLGADYVFTEEELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~-~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                      .|.+|+|.|. |.+|..+++.+...|++|+++..+    ..+.+. ...+|+. .++.+++   .    ...+|+++.|.
T Consensus        27 ~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vvv~D~~----~~~~~~~~~~~g~~-~v~~~~l---~----~~~~Dv~vp~A   93 (200)
T cd01075          27 EGKTVAVQGL-GKVGYKLAEHLLEEGAKLIVADIN----EEAVARAAELFGAT-VVAPEEI---Y----SVDADVFAPCA   93 (200)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCC----HHHHHHHHHHcCCE-EEcchhh---c----cccCCEEEecc
Confidence            6789999999 899999999999999999855332    222333 3344654 3333221   1    12578888766


Q ss_pred             CchhH-HHHHHhcc
Q psy2960         292 GGNSA-TNLLRTLV  304 (405)
Q Consensus       292 g~~~~-~~~~~~l~  304 (405)
                      .+..+ ...++.++
T Consensus        94 ~~~~I~~~~~~~l~  107 (200)
T cd01075          94 LGGVINDDTIPQLK  107 (200)
T ss_pred             cccccCHHHHHHcC
Confidence            54433 34455554

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=93.97  E-value=2.1  Score=38.60  Aligned_cols=34  Identities=12%  Similarity=0.150  Sum_probs=29.7

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      ..+|+|.|+ ||+|..++..+-..|...+.+++.+
T Consensus        11 ~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D   44 (231)
T cd00755          11 NAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFD   44 (231)
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence            468999999 9999999999999999888887654

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=93.93  E-value=0.49  Score=44.25  Aligned_cols=95  Identities=14%  Similarity=0.103  Sum_probs=59.6

Q ss_pred             CEEEEeCCCcHHHHH-HHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCCc
Q psy2960         215 DVVIQNGANSACGQN-VIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGG  293 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~-aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~  293 (405)
                      -+|.|.|. |.+|.. +..+.+.-++++.++++.+... ..+..++++|....+  ++++.+.+......+|+||++++.
T Consensus         5 lrVAIIGt-G~IGt~hm~~l~~~~~velvAVvdid~es-~gla~A~~~Gi~~~~--~~ie~LL~~~~~~dIDiVf~AT~a   80 (302)
T PRK08300          5 LKVAIIGS-GNIGTDLMIKILRSEHLEPGAMVGIDPES-DGLARARRLGVATSA--EGIDGLLAMPEFDDIDIVFDATSA   80 (302)
T ss_pred             CeEEEEcC-cHHHHHHHHHHhcCCCcEEEEEEeCChhh-HHHHHHHHcCCCccc--CCHHHHHhCcCCCCCCEEEECCCH
Confidence            46899996 999987 4555555578999988764332 234567788865433  233332222112569999999998


Q ss_pred             hhHHHHHHhcccCCEEEEEe
Q psy2960         294 NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       294 ~~~~~~~~~l~~~G~~v~~g  313 (405)
                      ..-......+.+.|..+..-
T Consensus        81 ~~H~e~a~~a~eaGk~VID~  100 (302)
T PRK08300         81 GAHVRHAAKLREAGIRAIDL  100 (302)
T ss_pred             HHHHHHHHHHHHcCCeEEEC
Confidence            76555554445555554443

>KOG1252|consensus

Probab=93.93  E-value=0.33  Score=45.38  Aligned_cols=60  Identities=20%  Similarity=0.328  Sum_probs=52.5

Q ss_pred             hcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeC
Q psy2960         208 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT  268 (405)
Q Consensus       208 ~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~  268 (405)
                      .+.+.||.++||-.-+|..|.+.+.++...|++++++... ....+|...++++|+..|..
T Consensus        97 ~G~i~pg~stliEpTSGNtGigLA~~~a~~Gyk~i~tmP~-~ms~Ek~~~l~a~Gaeii~t  156 (362)
T KOG1252|consen   97 KGLITPGKSTLIEPTSGNTGIGLAYMAALRGYKCIITMPE-KMSKEKRILLRALGAEIILT  156 (362)
T ss_pred             cCCccCCceEEEecCCCchHHHHHHHHHHcCceEEEEech-hhhHHHHHHHHHcCCEEEec
Confidence            3789999999999999999999999999999999999843 45677889999999987763

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=93.92  E-value=0.55  Score=46.56  Aligned_cols=102  Identities=16%  Similarity=0.122  Sum_probs=60.5

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHcC-CcEEEEecCCcchHHHHHHHHHcCCcE-E--eChhhHHHHhhhcCCCCC
Q psy2960         209 NSLSPGDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGADY-V--FTEEELRNISRDASIPKP  284 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~aiqla~~~G-~~v~~~~~~~~~~~~~~~~~~~lg~~~-v--~~~~d~~~i~~~t~g~g~  284 (405)
                      .+.++|++||=.|+  |.|..++++++.++ .+++++-.+.+..+...+.++.+|.+. +  .+. |............+
T Consensus       234 L~~~~g~~VLDlca--g~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~-d~~~~~~~~~~~~f  310 (426)
T TIGR00563       234 LAPQNEETILDACA--APGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDG-DGRGPSQWAENEQF  310 (426)
T ss_pred             hCCCCCCeEEEeCC--CccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecc-cccccccccccccc
Confidence            46789999998887  44666777777775 566666544443344445566677652 2  221 11111111123469


Q ss_pred             cEEEE---CCCch--------------------------hHHHHHHhcccCCEEEEEe
Q psy2960         285 KLALN---CVGGN--------------------------SATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       285 Dvvld---~~g~~--------------------------~~~~~~~~l~~~G~~v~~g  313 (405)
                      |.||-   |+|..                          .+..++++|+|||+++..-
T Consensus       311 D~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst  368 (426)
T TIGR00563       311 DRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT  368 (426)
T ss_pred             CEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            99873   55421                          2345678899999998754

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=93.89  E-value=0.26  Score=46.56  Aligned_cols=37  Identities=22%  Similarity=0.327  Sum_probs=32.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD  249 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~  249 (405)
                      .|.+|||.||+|.+|...+..+...|.+|++++++.+
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~   39 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPN   39 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCC
Confidence            3678999999999999999999999999998887654

>PRK01581 speE spermidine synthase; Validated

Probab=93.89  E-value=0.83  Score=43.80  Aligned_cols=94  Identities=11%  Similarity=0.094  Sum_probs=55.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcC-----------CcEE-eChhhHHH-Hhhhc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG-----------ADYV-FTEEELRN-ISRDA  279 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg-----------~~~v-~~~~d~~~-i~~~t  279 (405)
                      ..++|||.|+  |.|.++..++++-+...+.++   |..++..+.+++..           ..++ +-..|..+ +.+. 
T Consensus       150 ~PkrVLIIGg--GdG~tlrelLk~~~v~~It~V---EIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~-  223 (374)
T PRK01581        150 DPKRVLILGG--GDGLALREVLKYETVLHVDLV---DLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP-  223 (374)
T ss_pred             CCCEEEEECC--CHHHHHHHHHhcCCCCeEEEE---eCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc-
Confidence            3469999997  456777788887666667777   43445566666421           1111 11123223 4332 


Q ss_pred             CCCCCcEEEECCCc------------hhHHHHHHhcccCCEEEEEe
Q psy2960         280 SIPKPKLALNCVGG------------NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       280 ~g~g~Dvvld~~g~------------~~~~~~~~~l~~~G~~v~~g  313 (405)
                       ...+|+||--...            +.+..+.+.|+|+|.++.-.
T Consensus       224 -~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs  268 (374)
T PRK01581        224 -SSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS  268 (374)
T ss_pred             -CCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence             4579998754321            13345578999999987764

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.88  E-value=0.56  Score=43.79  Aligned_cols=95  Identities=14%  Similarity=0.149  Sum_probs=67.6

Q ss_pred             ccCCCcHHHHHHHHHhhcCC-CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEe-cCCcchHHHHHHHHHcCCcEEeCh
Q psy2960         192 SGITSNPCTAYRMLKDYNSL-SPGDVVIQNGANSACGQNVIQIARHWGLKTINIV-RNRDDIDKLKSYLKSLGADYVFTE  269 (405)
Q Consensus       192 a~~~~~~~ta~~al~~~~~~-~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~-~~~~~~~~~~~~~~~lg~~~v~~~  269 (405)
                      ..+||+....+..|... ++ -.|++|+|.|-++.+|.-.+.++...|+.|++.- ++.+                    
T Consensus       136 ~~~PcTp~ai~~ll~~~-~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~--------------------  194 (296)
T PRK14188        136 ALVPCTPLGCMMLLRRV-HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRD--------------------  194 (296)
T ss_pred             CCcCCCHHHHHHHHHHh-CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCC--------------------
Confidence            45677777666666553 43 4799999999889999999999999999888772 2211                    


Q ss_pred             hhHHHHhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEecc
Q psy2960         270 EELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       270 ~d~~~i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~  315 (405)
                        ..++.     +..|+|+-++|.+..... ..+++|..++.+|..
T Consensus       195 --l~e~~-----~~ADIVIsavg~~~~v~~-~~lk~GavVIDvGin  232 (296)
T PRK14188        195 --LPAVC-----RRADILVAAVGRPEMVKG-DWIKPGATVIDVGIN  232 (296)
T ss_pred             --HHHHH-----hcCCEEEEecCChhhcch-heecCCCEEEEcCCc
Confidence              11111     246999999998765332 238899999998843

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.87  E-value=0.65  Score=43.01  Aligned_cols=95  Identities=11%  Similarity=0.136  Sum_probs=68.3

Q ss_pred             ccCCCcHHHHHHHHHhhcCCC-CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChh
Q psy2960         192 SGITSNPCTAYRMLKDYNSLS-PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE  270 (405)
Q Consensus       192 a~~~~~~~ta~~al~~~~~~~-~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~  270 (405)
                      ..+||+....+..+.. -++. .|.+|+|.|.+.-+|.-...++...||+|.+.- +..                    +
T Consensus       142 ~~~PcTp~av~~ll~~-~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~h-s~T--------------------~  199 (287)
T PRK14176        142 GLVPCTPHGVIRALEE-YGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCH-VFT--------------------D  199 (287)
T ss_pred             CCCCCcHHHHHHHHHH-cCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEe-ccC--------------------C
Confidence            4567777766666655 4553 799999999988899999999999999886553 111                    1


Q ss_pred             hHHHHhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEec
Q psy2960         271 ELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       271 d~~~i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~  314 (405)
                      +..+   .+  +..|+|+.++|.+.+. --+.++++-.++.+|.
T Consensus       200 ~l~~---~~--~~ADIvv~AvG~p~~i-~~~~vk~gavVIDvGi  237 (287)
T PRK14176        200 DLKK---YT--LDADILVVATGVKHLI-KADMVKEGAVIFDVGI  237 (287)
T ss_pred             CHHH---HH--hhCCEEEEccCCcccc-CHHHcCCCcEEEEecc
Confidence            1122   11  2469999999987654 3458899999999984

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=93.84  E-value=0.23  Score=51.96  Aligned_cols=79  Identities=16%  Similarity=0.180  Sum_probs=55.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc-----------------chHHHHHHHHHcCCcEEeChhh-HHH
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD-----------------DIDKLKSYLKSLGADYVFTEEE-LRN  274 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~-----------------~~~~~~~~~~~lg~~~v~~~~d-~~~  274 (405)
                      .|++|+|.|+ |+.|+.++..++..|.+|++.-+.+.                 ..+.+.+.++++|.+..++..- ...
T Consensus       309 ~~kkVaIIG~-GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~  387 (639)
T PRK12809        309 RSEKVAVIGA-GPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDI  387 (639)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcC
Confidence            4899999999 99999999999999999877754321                 0123467778899887766431 111


Q ss_pred             -HhhhcCCCCCcEEEECCCch
Q psy2960         275 -ISRDASIPKPKLALNCVGGN  294 (405)
Q Consensus       275 -i~~~t~g~g~Dvvld~~g~~  294 (405)
                       +.++.  .++|.||.++|..
T Consensus       388 ~~~~l~--~~~DaV~latGa~  406 (639)
T PRK12809        388 TFSDLT--SEYDAVFIGVGTY  406 (639)
T ss_pred             CHHHHH--hcCCEEEEeCCCC
Confidence             22222  3689999999863

>KOG4169|consensus

Probab=93.84  E-value=0.29  Score=43.29  Aligned_cols=101  Identities=15%  Similarity=0.223  Sum_probs=64.0

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc-CCcEE-e------ChhhHHH-Hhhhc-CCCC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADYV-F------TEEELRN-ISRDA-SIPK  283 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l-g~~~v-~------~~~d~~~-i~~~t-~g~g  283 (405)
                      |.++++.|++||+|++....+...|+++.++..+.|..+. ...+++. ....+ |      +..+.++ ..+.. .-+-
T Consensus         5 GKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~~a-~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~fg~   83 (261)
T KOG4169|consen    5 GKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEA-IAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILATFGT   83 (261)
T ss_pred             CceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCHHH-HHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHHhCc
Confidence            8999999999999999999999999999999877665333 3333332 32223 2      2223222 22221 1345


Q ss_pred             CcEEEECCCch------------------hHHHHHHhc-----ccCCEEEEEecc
Q psy2960         284 PKLALNCVGGN------------------SATNLLRTL-----VSKGVMVTYGGM  315 (405)
Q Consensus       284 ~Dvvld~~g~~------------------~~~~~~~~l-----~~~G~~v~~g~~  315 (405)
                      +|+.||..|--                  ....++..+     .+||.+|.+++.
T Consensus        84 iDIlINgAGi~~dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv  138 (261)
T KOG4169|consen   84 IDILINGAGILDDKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSV  138 (261)
T ss_pred             eEEEEcccccccchhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccc
Confidence            79999988731                  112233333     378999998864

>PRK07574 formate dehydrogenase; Provisional

Probab=93.81  E-value=0.54  Score=45.76  Aligned_cols=35  Identities=26%  Similarity=0.258  Sum_probs=31.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      .|.+|.|.|. |.+|+..++.++.+|+++++..++.
T Consensus       191 ~gktVGIvG~-G~IG~~vA~~l~~fG~~V~~~dr~~  225 (385)
T PRK07574        191 EGMTVGIVGA-GRIGLAVLRRLKPFDVKLHYTDRHR  225 (385)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCCC
Confidence            5789999999 9999999999999999999886553

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=93.81  E-value=0.12  Score=46.23  Aligned_cols=74  Identities=12%  Similarity=0.165  Sum_probs=47.2

Q ss_pred             EEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEEECCCc
Q psy2960         217 VIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALNCVGG  293 (405)
Q Consensus       217 VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld~~g~  293 (405)
                      |||.||+|-+|...+..+...|.+|+...++........   .......+ .|..+.+.+.+......+|+|+.+.+.
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~---~~~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~   75 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEE---KKLNVEFVIGDLTDKEQLEKLLEKANIDVVIHLAAF   75 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHH---HHTTEEEEESETTSHHHHHHHHHHHTESEEEEEBSS
T ss_pred             EEEEccCCHHHHHHHHHHHHcCCcccccccccccccccc---ccceEEEEEeeccccccccccccccCceEEEEeecc
Confidence            799999999999999999999999998887765422111   11222222 232222222222222378999998875

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PLN00198 anthocyanidin reductase; Provisional

Probab=93.80  E-value=0.27  Score=46.94  Aligned_cols=77  Identities=14%  Similarity=0.164  Sum_probs=48.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc---CCcEEe--ChhhHHHHhhhcCCCCCcEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL---GADYVF--TEEELRNISRDASIPKPKLA  287 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l---g~~~v~--~~~d~~~i~~~t~g~g~Dvv  287 (405)
                      .+.+|||.||+|.+|...+..+...|++|++++++.+.... ......+   +.-.++  |-+|...+.+..  .++|+|
T Consensus         8 ~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--~~~d~v   84 (338)
T PLN00198          8 GKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKK-IAHLRALQELGDLKIFGADLTDEESFEAPI--AGCDLV   84 (338)
T ss_pred             CCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHH-HHHHHhcCCCCceEEEEcCCCChHHHHHHH--hcCCEE
Confidence            37899999999999999999999999999888766443211 1111122   211222  333333233322  257999


Q ss_pred             EECCC
Q psy2960         288 LNCVG  292 (405)
Q Consensus       288 ld~~g  292 (405)
                      |.+.+
T Consensus        85 ih~A~   89 (338)
T PLN00198         85 FHVAT   89 (338)
T ss_pred             EEeCC
Confidence            99886

>PLN02650 dihydroflavonol-4-reductase

Probab=93.78  E-value=0.35  Score=46.50  Aligned_cols=38  Identities=18%  Similarity=0.216  Sum_probs=33.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD  250 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~  250 (405)
                      ...+|||.||+|.+|...+..+...|.+|++++++.+.
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~   41 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPAN   41 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcch
Confidence            35689999999999999999999999999998876543

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.76  E-value=0.29  Score=48.83  Aligned_cols=75  Identities=11%  Similarity=0.015  Sum_probs=48.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      .|.+|+|.|+ |++|.+++.+++..|++|++.-...+......+.+.+.|......... ..+.    ..++|+|+.+.|
T Consensus         4 ~~k~v~v~G~-g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~~----~~~~d~vV~s~g   77 (447)
T PRK02472          4 QNKKVLVLGL-AKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHP-LELL----DEDFDLMVKNPG   77 (447)
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCC-HHHh----cCcCCEEEECCC
Confidence            4788999999 679999999999999998887533322222334456667654332211 1111    124799999886


Q ss_pred             c
Q psy2960         293 G  293 (405)
Q Consensus       293 ~  293 (405)
                      -
T Consensus        78 i   78 (447)
T PRK02472         78 I   78 (447)
T ss_pred             C
Confidence            4

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=93.75  E-value=1.2  Score=38.54  Aligned_cols=109  Identities=19%  Similarity=0.158  Sum_probs=61.6

Q ss_pred             cHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcE--EeChhhHH
Q psy2960         197 NPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADY--VFTEEELR  273 (405)
Q Consensus       197 ~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~--v~~~~d~~  273 (405)
                      ..-.....+.....+.++++||=.|+  |.|..++.+++.. +++++++-.+.+..+...+.+...+...  ++. .+..
T Consensus        15 ~~~~~r~~~~~~l~~~~~~~vLDiG~--G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~-~d~~   91 (187)
T PRK08287         15 TKEEVRALALSKLELHRAKHLIDVGA--GTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIP-GEAP   91 (187)
T ss_pred             chHHHHHHHHHhcCCCCCCEEEEECC--cCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEe-cCch
Confidence            33333333434467788999998887  4588888888876 3566666544332222233333444332  222 1211


Q ss_pred             HHhhhcCCCCCcEEEECCCch----hHHHHHHhcccCCEEEEE
Q psy2960         274 NISRDASIPKPKLALNCVGGN----SATNLLRTLVSKGVMVTY  312 (405)
Q Consensus       274 ~i~~~t~g~g~Dvvld~~g~~----~~~~~~~~l~~~G~~v~~  312 (405)
                      .  ..  ...+|+|+......    .+..+.+.|+++|+++..
T Consensus        92 ~--~~--~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~  130 (187)
T PRK08287         92 I--EL--PGKADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLT  130 (187)
T ss_pred             h--hc--CcCCCEEEECCCccCHHHHHHHHHHhcCCCeEEEEE
Confidence            1  01  24689998643222    334567899999998764

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=93.74  E-value=0.14  Score=46.87  Aligned_cols=73  Identities=10%  Similarity=0.049  Sum_probs=48.6

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe-ChhhHHHHhhhcCCCCCcEEEECCCc
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVGG  293 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~-~~~d~~~i~~~t~g~g~Dvvld~~g~  293 (405)
                      +|||.||+|- |...+..+...|.+|++++.+...    .+.+...|...+. ..-+...+.+.....++|+|+|++..
T Consensus         2 ~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~----~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHP   75 (256)
T TIGR00715         2 TVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEG----KHLYPIHQALTVHTGALDPQELREFLKRHSIDILVDATHP   75 (256)
T ss_pred             eEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCc----cccccccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCCH
Confidence            6999999765 998888887889999999977654    3344455554443 21111113333335689999999864

This enzyme was found to be a monomer by gel filtration.

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=93.73  E-value=0.76  Score=44.80  Aligned_cols=74  Identities=22%  Similarity=0.347  Sum_probs=53.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH-HhhhcCCCCCcEEEECC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCV  291 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~Dvvld~~  291 (405)
                      .+.+|||.|+ |-+|..++.-+...|...+.++...  .+...++++++|+. +...++... +      ..+|+||-|+
T Consensus       177 ~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT--~erA~~La~~~~~~-~~~l~el~~~l------~~~DvVissT  246 (414)
T COG0373         177 KDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRT--LERAEELAKKLGAE-AVALEELLEAL------AEADVVISST  246 (414)
T ss_pred             ccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCC--HHHHHHHHHHhCCe-eecHHHHHHhh------hhCCEEEEec
Confidence            6899999999 8999999999999998777776332  23445678889854 334444333 3      2469999999


Q ss_pred             CchhH
Q psy2960         292 GGNSA  296 (405)
Q Consensus       292 g~~~~  296 (405)
                      |.+..
T Consensus       247 sa~~~  251 (414)
T COG0373         247 SAPHP  251 (414)
T ss_pred             CCCcc
Confidence            87643

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=93.71  E-value=0.36  Score=44.73  Aligned_cols=91  Identities=20%  Similarity=0.239  Sum_probs=60.9

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE--e--ChhhHHH-HhhhcCCCCCcEEEE
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV--F--TEEELRN-ISRDASIPKPKLALN  289 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v--~--~~~d~~~-i~~~t~g~g~Dvvld  289 (405)
                      .+|.|.|+ |-+|.-++.+|..+|++|.+...+.    .|+..+..+-..++  .  +..++++ +.      +.|++|.
T Consensus       169 ~kv~iiGG-GvvgtnaAkiA~glgA~Vtild~n~----~rl~~ldd~f~~rv~~~~st~~~iee~v~------~aDlvIg  237 (371)
T COG0686         169 AKVVVLGG-GVVGTNAAKIAIGLGADVTILDLNI----DRLRQLDDLFGGRVHTLYSTPSNIEEAVK------KADLVIG  237 (371)
T ss_pred             ccEEEECC-ccccchHHHHHhccCCeeEEEecCH----HHHhhhhHhhCceeEEEEcCHHHHHHHhh------hccEEEE
Confidence            45778888 8999999999999999999986553    33444444322222  2  1223444 43      4599998


Q ss_pred             CC--Cch-----hHHHHHHhcccCCEEEEEeccC
Q psy2960         290 CV--GGN-----SATNLLRTLVSKGVMVTYGGMS  316 (405)
Q Consensus       290 ~~--g~~-----~~~~~~~~l~~~G~~v~~g~~~  316 (405)
                      ++  ++.     ...+.++.|+||+.++.+....
T Consensus       238 aVLIpgakaPkLvt~e~vk~MkpGsVivDVAiDq  271 (371)
T COG0686         238 AVLIPGAKAPKLVTREMVKQMKPGSVIVDVAIDQ  271 (371)
T ss_pred             EEEecCCCCceehhHHHHHhcCCCcEEEEEEEcC
Confidence            65  221     2245689999999999997543

>PRK00811 spermidine synthase; Provisional

Probab=93.71  E-value=0.63  Score=43.37  Aligned_cols=95  Identities=13%  Similarity=0.161  Sum_probs=55.3

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH----cCC-----cEE-eChhhHHH-HhhhcC
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS----LGA-----DYV-FTEEELRN-ISRDAS  280 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~----lg~-----~~v-~~~~d~~~-i~~~t~  280 (405)
                      ...++||+.|+  |.|..+..++++.+...+..+..+   +...+.+++    +..     .++ +-..|... +..  .
T Consensus        75 ~~p~~VL~iG~--G~G~~~~~~l~~~~~~~V~~VEid---~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--~  147 (283)
T PRK00811         75 PNPKRVLIIGG--GDGGTLREVLKHPSVEKITLVEID---ERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--T  147 (283)
T ss_pred             CCCCEEEEEec--CchHHHHHHHcCCCCCEEEEEeCC---HHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--C
Confidence            35689999998  447888888888777666666332   333444443    211     111 11223333 333  2


Q ss_pred             CCCCcEEEECCC-----------chhHHHHHHhcccCCEEEEEe
Q psy2960         281 IPKPKLALNCVG-----------GNSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       281 g~g~Dvvld~~g-----------~~~~~~~~~~l~~~G~~v~~g  313 (405)
                      ...+|+|+--+.           .+.+..+.+.|+++|.++.-.
T Consensus       148 ~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~  191 (283)
T PRK00811        148 ENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQS  191 (283)
T ss_pred             CCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence            457999885432           122345568899999998753

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=93.70  E-value=0.72  Score=41.01  Aligned_cols=101  Identities=16%  Similarity=0.158  Sum_probs=65.3

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHcC-CcEEEEecCCc-chHHHHHHHHHcCCcEEe---ChhhHHH-HhhhcCCC
Q psy2960         209 NSLSPGDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRD-DIDKLKSYLKSLGADYVF---TEEELRN-ISRDASIP  282 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~aiqla~~~G-~~v~~~~~~~~-~~~~~~~~~~~lg~~~v~---~~~d~~~-i~~~t~g~  282 (405)
                      +..+...+||=.|.  +.|..++.+|..+. -..++++..++ ..+...+.+++.|.+..+   ..-|..+ +.+ ....
T Consensus        55 ~~~~~~k~iLEiGT--~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~-~~~~  131 (219)
T COG4122          55 ARLSGPKRILEIGT--AIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR-LLDG  131 (219)
T ss_pred             HHhcCCceEEEeec--ccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh-ccCC
Confidence            55667889999986  78999999999987 34455654333 333345566677876532   1124333 443 2346


Q ss_pred             CCcEEE-ECCCc---hhHHHHHHhcccCCEEEEE
Q psy2960         283 KPKLAL-NCVGG---NSATNLLRTLVSKGVMVTY  312 (405)
Q Consensus       283 g~Dvvl-d~~g~---~~~~~~~~~l~~~G~~v~~  312 (405)
                      .+|+|| |+--.   +.+..++++|++||-++.=
T Consensus       132 ~fDliFIDadK~~yp~~le~~~~lLr~GGliv~D  165 (219)
T COG4122         132 SFDLVFIDADKADYPEYLERALPLLRPGGLIVAD  165 (219)
T ss_pred             CccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEe
Confidence            799987 44433   3446678999999998764

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=93.63  E-value=0.61  Score=42.12  Aligned_cols=104  Identities=12%  Similarity=0.135  Sum_probs=60.3

Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcC--CcEEEEecCCcchHHHHHHHHHcCCcEEeC--hhhHHH-HhhhcC-
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLGADYVFT--EEELRN-ISRDAS-  280 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G--~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~--~~d~~~-i~~~t~-  280 (405)
                      ...+..+.++||=.|.  +.|..++.+|+.++  .+++++-.+++..+...+.+...|.+.-+.  ..|..+ +.++.. 
T Consensus        62 ~l~~~~~~~~vLEiGt--~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~  139 (234)
T PLN02781         62 MLVKIMNAKNTLEIGV--FTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNN  139 (234)
T ss_pred             HHHHHhCCCEEEEecC--cccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhC
Confidence            3356677889999987  67888888888764  355555333332233344455566532111  123333 333321 


Q ss_pred             --CCCCcEEEECCCc----hhHHHHHHhcccCCEEEEE
Q psy2960         281 --IPKPKLALNCVGG----NSATNLLRTLVSKGVMVTY  312 (405)
Q Consensus       281 --g~g~Dvvld~~g~----~~~~~~~~~l~~~G~~v~~  312 (405)
                        ...+|+||--...    ..+..+++++++||.++.-
T Consensus       140 ~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~d  177 (234)
T PLN02781        140 DPKPEFDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFD  177 (234)
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence              3579998854432    2334568999999987753

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=93.63  E-value=0.96  Score=43.77  Aligned_cols=58  Identities=19%  Similarity=0.194  Sum_probs=43.7

Q ss_pred             hhhccCCCcHHHHHHHHHhhcCC-CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc
Q psy2960         189 TEISGITSNPCTAYRMLKDYNSL-SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD  249 (405)
Q Consensus       189 ~~Aa~~~~~~~ta~~al~~~~~~-~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~  249 (405)
                      ++|-...+.+++- .++.. .+. -.|.+|.|.|- |.||+.+++.+...|++++++..+..
T Consensus       183 ~~aTg~Gv~~~~~-~a~~~-~g~~l~G~rVaVQG~-GNVg~~aa~~l~~~GAkvva~sds~g  241 (411)
T COG0334         183 SEATGYGVFYAIR-EALKA-LGDDLEGARVAVQGF-GNVGQYAAEKLHELGAKVVAVSDSKG  241 (411)
T ss_pred             CcccceehHHHHH-HHHHH-cCCCcCCCEEEEECc-cHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            4455555555544 44444 333 38999999999 99999999999999999999987654

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=93.62  E-value=0.74  Score=45.66  Aligned_cols=103  Identities=15%  Similarity=0.137  Sum_probs=59.2

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHcC-CcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEE
Q psy2960         209 NSLSPGDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLA  287 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~aiqla~~~G-~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvv  287 (405)
                      .++++|++||=.|+  |.|..+..+++..+ .+++++-.+.+..+...+.++.+|....+-..|............+|.|
T Consensus       240 l~~~~g~~VLDlga--G~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~V  317 (427)
T PRK10901        240 LAPQNGERVLDACA--APGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRI  317 (427)
T ss_pred             cCCCCCCEEEEeCC--CCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEE
Confidence            46789999988887  34666677777765 5676665444433444455566665422211222111111123468998


Q ss_pred             EE---CCCc--------------------------hhHHHHHHhcccCCEEEEEe
Q psy2960         288 LN---CVGG--------------------------NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       288 ld---~~g~--------------------------~~~~~~~~~l~~~G~~v~~g  313 (405)
                      +-   |.|.                          ..+..+.+.|+|||+++...
T Consensus       318 l~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvyst  372 (427)
T PRK10901        318 LLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYAT  372 (427)
T ss_pred             EECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            72   4431                          12345678899999998654

>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=93.61  E-value=0.38  Score=43.59  Aligned_cols=37  Identities=22%  Similarity=0.410  Sum_probs=32.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD  249 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~  249 (405)
                      .+.++||.|+++|+|.+++.-+...|++++++.++.+
T Consensus         4 ~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~   40 (251)
T COG1028           4 SGKVALVTGASSGIGRAIARALAREGARVVVAARRSE   40 (251)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCc
Confidence            5789999999999999999888899999888887654

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=93.60  E-value=0.49  Score=43.44  Aligned_cols=88  Identities=15%  Similarity=0.189  Sum_probs=53.9

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCCch
Q psy2960         216 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGN  294 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~~  294 (405)
                      +|+|.|++|.+|...++.+... +++++++++.+....   ......+.   ..+.+++++.     ..+|+|+|++..+
T Consensus         3 kV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~---~~~~~~~i---~~~~dl~~ll-----~~~DvVid~t~p~   71 (257)
T PRK00048          3 KVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPL---VGQGALGV---AITDDLEAVL-----ADADVLIDFTTPE   71 (257)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc---cccCCCCc---cccCCHHHhc-----cCCCEEEECCCHH
Confidence            6899999999999999888764 788888886543211   11112222   2233443321     1589999999766


Q ss_pred             hHHHHHHhcccCCEEEEEec
Q psy2960         295 SATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       295 ~~~~~~~~l~~~G~~v~~g~  314 (405)
                      .....+..+...|.=+.+|.
T Consensus        72 ~~~~~~~~al~~G~~vvigt   91 (257)
T PRK00048         72 ATLENLEFALEHGKPLVIGT   91 (257)
T ss_pred             HHHHHHHHHHHcCCCEEEEC
Confidence            65554444444455455773

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=93.58  E-value=1  Score=41.24  Aligned_cols=95  Identities=13%  Similarity=0.150  Sum_probs=60.4

Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCc
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPK  285 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~D  285 (405)
                      ......++++||=.|+  |.|..+..+++.. +++++++--    .+..++.+++.+.+.+.  .|...   ......+|
T Consensus        23 ~~l~~~~~~~vLDlGc--G~G~~~~~l~~~~p~~~v~gvD~----s~~~~~~a~~~~~~~~~--~d~~~---~~~~~~fD   91 (255)
T PRK14103         23 ARVGAERARRVVDLGC--GPGNLTRYLARRWPGAVIEALDS----SPEMVAAARERGVDART--GDVRD---WKPKPDTD   91 (255)
T ss_pred             HhCCCCCCCEEEEEcC--CCCHHHHHHHHHCCCCEEEEEEC----CHHHHHHHHhcCCcEEE--cChhh---CCCCCCce
Confidence            3356678999999998  4478888888876 667776643    34446666665544322  12221   11235799


Q ss_pred             EEEECCCc-------hhHHHHHHhcccCCEEEEE
Q psy2960         286 LALNCVGG-------NSATNLLRTLVSKGVMVTY  312 (405)
Q Consensus       286 vvld~~g~-------~~~~~~~~~l~~~G~~v~~  312 (405)
                      +|+-...-       ..+....+.|+|||+++..
T Consensus        92 ~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~  125 (255)
T PRK14103         92 VVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQ  125 (255)
T ss_pred             EEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEE
Confidence            99975531       2234567889999999865

>KOG1014|consensus

Probab=93.54  E-value=0.46  Score=44.06  Aligned_cols=82  Identities=13%  Similarity=0.215  Sum_probs=55.7

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHH-HHHHHHcCCc---EEeChh--h--HHHHhhhcCCCC
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKL-KSYLKSLGAD---YVFTEE--E--LRNISRDASIPK  283 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~-~~~~~~lg~~---~v~~~~--d--~~~i~~~t~g~g  283 (405)
                      +-|++.+|.||+.|+|.+-+.=+...|.+++.+.|+.++.+.. .|..++.++.   +++|..  +  ++.+++.+.+-.
T Consensus        47 ~~g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~  126 (312)
T KOG1014|consen   47 KLGSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLD  126 (312)
T ss_pred             hcCCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCc
Confidence            4579999999999999876644444999999999887765443 3444445532   233421  2  344666666777


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +-+.+|++|-
T Consensus       127 VgILVNNvG~  136 (312)
T KOG1014|consen  127 VGILVNNVGM  136 (312)
T ss_pred             eEEEEecccc
Confidence            7889999984

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.51  E-value=0.74  Score=43.00  Aligned_cols=95  Identities=13%  Similarity=0.154  Sum_probs=67.3

Q ss_pred             ccCCCcHHHHHHHHHhhcCC-CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChh
Q psy2960         192 SGITSNPCTAYRMLKDYNSL-SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE  270 (405)
Q Consensus       192 a~~~~~~~ta~~al~~~~~~-~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~  270 (405)
                      ..+||+....+..|... ++ -.|++|.|.|.++-+|.-.+.++...|++|++.-+...                     
T Consensus       137 ~~~PcTp~aii~lL~~~-~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~---------------------  194 (301)
T PRK14194        137 VLTPCTPSGCLRLLEDT-CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST---------------------  194 (301)
T ss_pred             CCCCCcHHHHHHHHHHh-CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC---------------------
Confidence            45677777666666553 44 37999999999889999999999999998887732211                     


Q ss_pred             hHHHHhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEec
Q psy2960         271 ELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       271 d~~~i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~  314 (405)
                      +..+   .+  +..|+|+-++|.+..... ..+++|..++.+|.
T Consensus       195 ~l~e---~~--~~ADIVIsavg~~~~v~~-~~ik~GaiVIDvgi  232 (301)
T PRK14194        195 DAKA---LC--RQADIVVAAVGRPRLIDA-DWLKPGAVVIDVGI  232 (301)
T ss_pred             CHHH---HH--hcCCEEEEecCChhcccH-hhccCCcEEEEecc
Confidence            1111   11  246999999998755332 23889999999884

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=93.47  E-value=0.77  Score=40.93  Aligned_cols=36  Identities=17%  Similarity=0.160  Sum_probs=32.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD  249 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~  249 (405)
                      .|.+|+|.|- |.||..+++.+...|++++++++++.
T Consensus        22 ~g~~vaIqGf-GnVG~~~a~~L~~~G~~vV~vsD~~g   57 (217)
T cd05211          22 EGLTVAVQGL-GNVGWGLAKKLAEEGGKVLAVSDPDG   57 (217)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence            6899999999 99999999999999999999987654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=93.47  E-value=0.48  Score=42.32  Aligned_cols=97  Identities=9%  Similarity=0.050  Sum_probs=56.3

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHH-HHcCCcE---------EeChhhH---HH-H
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADY---------VFTEEEL---RN-I  275 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~-~~lg~~~---------v~~~~d~---~~-i  275 (405)
                      .+.++.+||+.|+  |.|.-++.+|. .|++|+++--+.    ..++.+ .+.+...         .....+.   .. +
T Consensus        34 ~~~~~~rvL~~gC--G~G~da~~LA~-~G~~V~avD~s~----~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~  106 (218)
T PRK13255         34 ALPAGSRVLVPLC--GKSLDMLWLAE-QGHEVLGVELSE----LAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDF  106 (218)
T ss_pred             CCCCCCeEEEeCC--CChHhHHHHHh-CCCeEEEEccCH----HHHHHHHHHcCCCccccccccccccccCceEEEECcc
Confidence            4467889999998  67999999986 799999985443    333332 2333211         1011110   00 1


Q ss_pred             hhhc--CCCCCcEEEECCC---------chhHHHHHHhcccCCEEEEEe
Q psy2960         276 SRDA--SIPKPKLALNCVG---------GNSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       276 ~~~t--~g~g~Dvvld~~g---------~~~~~~~~~~l~~~G~~v~~g  313 (405)
                      .+..  ....+|.|+|+..         ........++|+|+|+++.+.
T Consensus       107 ~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~  155 (218)
T PRK13255        107 FALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVT  155 (218)
T ss_pred             cCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence            1111  1246899999663         122344568999999865544

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=93.44  E-value=0.92  Score=34.35  Aligned_cols=85  Identities=16%  Similarity=0.196  Sum_probs=54.2

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcC---CcEEEE-ecCCcchHHHHHHHHHcCCcEEe-ChhhHHHHhhhcCCCCCcEEEEC
Q psy2960         216 VVIQNGANSACGQNVIQIARHWG---LKTINI-VRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNC  290 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G---~~v~~~-~~~~~~~~~~~~~~~~lg~~~v~-~~~d~~~i~~~t~g~g~Dvvld~  290 (405)
                      +|.|.|+ |.+|.+.+.-....|   .+++.+ .++.+   ...+..++++..... +..+.  +.      ..|+||-|
T Consensus         1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~---~~~~~~~~~~~~~~~~~~~~~--~~------~advvila   68 (96)
T PF03807_consen    1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPE---KAAELAKEYGVQATADDNEEA--AQ------EADVVILA   68 (96)
T ss_dssp             EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHH---HHHHHHHHCTTEEESEEHHHH--HH------HTSEEEE-
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHH---HHHHHHHhhccccccCChHHh--hc------cCCEEEEE
Confidence            5788888 999999999999999   788756 43332   234455677765443 22222  32      24999999


Q ss_pred             CCchhHHHHHHh---cccCCEEEEE
Q psy2960         291 VGGNSATNLLRT---LVSKGVMVTY  312 (405)
Q Consensus       291 ~g~~~~~~~~~~---l~~~G~~v~~  312 (405)
                      +-...+...++.   ..++..++.+
T Consensus        69 v~p~~~~~v~~~i~~~~~~~~vis~   93 (96)
T PF03807_consen   69 VKPQQLPEVLSEIPHLLKGKLVISI   93 (96)
T ss_dssp             S-GGGHHHHHHHHHHHHTTSEEEEE
T ss_pred             ECHHHHHHHHHHHhhccCCCEEEEe
Confidence            998877765433   4556666654

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PLN03139 formate dehydrogenase; Provisional

Probab=93.42  E-value=0.57  Score=45.56  Aligned_cols=34  Identities=21%  Similarity=0.212  Sum_probs=30.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN  247 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~  247 (405)
                      .|.+|.|.|. |.+|...++.++.+|+++++..++
T Consensus       198 ~gktVGIVG~-G~IG~~vA~~L~afG~~V~~~d~~  231 (386)
T PLN03139        198 EGKTVGTVGA-GRIGRLLLQRLKPFNCNLLYHDRL  231 (386)
T ss_pred             CCCEEEEEee-cHHHHHHHHHHHHCCCEEEEECCC
Confidence            6889999998 999999999999999999886543

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=93.42  E-value=0.19  Score=47.53  Aligned_cols=71  Identities=17%  Similarity=0.226  Sum_probs=47.4

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      +|||.|++|.+|...++.+...|.+|+++.++.+..    ......+...+ .|..+...+.+..  .++|+||++.+
T Consensus         2 ~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~----~~~~~~~~~~~~~D~~~~~~l~~~~--~~~d~vi~~a~   73 (328)
T TIGR03466         2 KVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDR----RNLEGLDVEIVEGDLRDPASLRKAV--AGCRALFHVAA   73 (328)
T ss_pred             eEEEECCccchhHHHHHHHHHCCCEEEEEEecCccc----cccccCCceEEEeeCCCHHHHHHHH--hCCCEEEEece
Confidence            699999999999999999999999999998765431    11223344333 2333333333332  35799999875

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=93.37  E-value=0.65  Score=44.43  Aligned_cols=35  Identities=20%  Similarity=0.216  Sum_probs=30.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      .+.+|+|.|+ |++|..++..+-..|...+++++.+
T Consensus        23 ~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D   57 (338)
T PRK12475         23 REKHVLIVGA-GALGAANAEALVRAGIGKLTIADRD   57 (338)
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            3578999999 9999999999999999888887654

>PRK13243 glyoxylate reductase; Reviewed

Probab=93.34  E-value=0.53  Score=45.01  Aligned_cols=35  Identities=26%  Similarity=0.382  Sum_probs=31.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      .|++|.|.|. |.+|...++.++.+|++|++..++.
T Consensus       149 ~gktvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~  183 (333)
T PRK13243        149 YGKTIGIIGF-GRIGQAVARRAKGFGMRILYYSRTR  183 (333)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCC
Confidence            6899999999 9999999999999999998776543

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=93.34  E-value=0.13  Score=46.40  Aligned_cols=102  Identities=19%  Similarity=0.242  Sum_probs=55.5

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHcC--CcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCc
Q psy2960         209 NSLSPGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPK  285 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~aiqla~~~G--~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~D  285 (405)
                      ...++|++||=.|+  |.|..+..+++..+  .+++++--+++..+...+..+..+...| +-..|.+.+.  .....+|
T Consensus        43 ~~~~~g~~vLDv~~--GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp--~~d~sfD  118 (233)
T PF01209_consen   43 LGLRPGDRVLDVAC--GTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP--FPDNSFD  118 (233)
T ss_dssp             HT--S--EEEEET---TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB----S-TT-EE
T ss_pred             cCCCCCCEEEEeCC--ChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc--CCCCcee
Confidence            56789999999887  56889999999876  4677775444443333344444444322 1111111110  1135689


Q ss_pred             EEEECCCc-------hhHHHHHHhcccCCEEEEEec
Q psy2960         286 LALNCVGG-------NSATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       286 vvld~~g~-------~~~~~~~~~l~~~G~~v~~g~  314 (405)
                      +|.-+.|-       ..+.+..+.|+|||+++.+..
T Consensus       119 ~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~  154 (233)
T PF01209_consen  119 AVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEF  154 (233)
T ss_dssp             EEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeec
Confidence            99987763       233456899999999887763

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=93.31  E-value=0.82  Score=43.55  Aligned_cols=97  Identities=15%  Similarity=0.163  Sum_probs=57.3

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HcCCcEEEEe-cCCcchHHHHHHHH-HcCCcEEeChhhHHH-HhhhcCCCCCcEE
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIAR-HWGLKTINIV-RNRDDIDKLKSYLK-SLGADYVFTEEELRN-ISRDASIPKPKLA  287 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~-~~G~~v~~~~-~~~~~~~~~~~~~~-~lg~~~v~~~~d~~~-i~~~t~g~g~Dvv  287 (405)
                      +...+++|.|+ |+.|.+.+..+. ..+.+.+.+. ++.++.+...+.+. .+|.+ +...++.++ +      .+.|+|
T Consensus       127 ~~~~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~-v~~~~~~~~av------~~aDiV  198 (326)
T TIGR02992       127 EDSSVVAIFGA-GMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGID-VTAATDPRAAM------SGADII  198 (326)
T ss_pred             CCCcEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCce-EEEeCCHHHHh------ccCCEE
Confidence            34578999999 999988877665 5776655544 44333333333332 23443 222233333 3      357999


Q ss_pred             EECCCchhHHHHHHhcccCCEEEEEeccC
Q psy2960         288 LNCVGGNSATNLLRTLVSKGVMVTYGGMS  316 (405)
Q Consensus       288 ld~~g~~~~~~~~~~l~~~G~~v~~g~~~  316 (405)
                      +.|++.....-.-+.++++-.+..+|...
T Consensus       199 vtaT~s~~p~i~~~~l~~g~~i~~vg~~~  227 (326)
T TIGR02992       199 VTTTPSETPILHAEWLEPGQHVTAMGSDA  227 (326)
T ss_pred             EEecCCCCcEecHHHcCCCcEEEeeCCCC
Confidence            99997643221234578877888788543

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK07340 ornithine cyclodeaminase; Validated

Probab=93.28  E-value=0.84  Score=43.01  Aligned_cols=101  Identities=7%  Similarity=0.085  Sum_probs=61.4

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHH-cCCcEEEEecC-CcchHHHHHHHHHcCCcEEeChhhHHH-HhhhcCCCCCcEEE
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARH-WGLKTINIVRN-RDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLAL  288 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~-~G~~v~~~~~~-~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~Dvvl  288 (405)
                      ....+|+|.|+ |..|.+.+..+.. .+.+.+.+.+. .++.+...+.+.+.+....  ..+.++ +      .+.|+|+
T Consensus       123 ~~~~~v~IiGa-G~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~--~~~~~~av------~~aDiVi  193 (304)
T PRK07340        123 APPGDLLLIGT-GVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAE--PLDGEAIP------EAVDLVV  193 (304)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeE--ECCHHHHh------hcCCEEE
Confidence            35679999999 9999998888764 67765555543 3332333333333333222  223333 3      3679999


Q ss_pred             ECCCchh-HHHHHHhcccCCEEEEEeccCCCCcccC
Q psy2960         289 NCVGGNS-ATNLLRTLVSKGVMVTYGGMSREPVQIP  323 (405)
Q Consensus       289 d~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~  323 (405)
                      .|+.+.. +...+  ++||-.+..+|.......+++
T Consensus       194 taT~s~~Pl~~~~--~~~g~hi~~iGs~~p~~~El~  227 (304)
T PRK07340        194 TATTSRTPVYPEA--ARAGRLVVAVGAFTPDMAELA  227 (304)
T ss_pred             EccCCCCceeCcc--CCCCCEEEecCCCCCCcccCC
Confidence            9998643 22332  788889999986554444444

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=93.23  E-value=1  Score=41.89  Aligned_cols=91  Identities=15%  Similarity=0.184  Sum_probs=58.6

Q ss_pred             EEEEeCCCcHHHHHH-HHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCCch
Q psy2960         216 VVIQNGANSACGQNV-IQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGN  294 (405)
Q Consensus       216 ~VLI~ga~G~vG~~a-iqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~~  294 (405)
                      +|.|.|+ |.+|... ..+.+.-++++.++++.+...+ .++.++++|....++  +.+.+.+   ...+|+|++|++..
T Consensus         3 rVAIIG~-G~IG~~h~~~ll~~~~~elvaV~d~d~es~-~la~A~~~Gi~~~~~--~~e~ll~---~~dIDaV~iaTp~~   75 (285)
T TIGR03215         3 KVAIIGS-GNIGTDLMYKLLRSEHLEMVAMVGIDPESD-GLARARELGVKTSAE--GVDGLLA---NPDIDIVFDATSAK   75 (285)
T ss_pred             EEEEEeC-cHHHHHHHHHHHhCCCcEEEEEEeCCcccH-HHHHHHHCCCCEEEC--CHHHHhc---CCCCCEEEECCCcH
Confidence            5889998 9999855 5666666889998886544322 345677888765542  2222211   24799999999987


Q ss_pred             hHHHHHHhcccCCEEEEEe
Q psy2960         295 SATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       295 ~~~~~~~~l~~~G~~v~~g  313 (405)
                      .-......+.+.|+.+..-
T Consensus        76 ~H~e~a~~al~aGk~VIde   94 (285)
T TIGR03215        76 AHARHARLLAELGKIVIDL   94 (285)
T ss_pred             HHHHHHHHHHHcCCEEEEC
Confidence            5554444445555555443

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=93.21  E-value=0.32  Score=45.62  Aligned_cols=78  Identities=12%  Similarity=0.040  Sum_probs=42.9

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcC--CcEEEEecCCc-chHHHHHHHHHc-CCcEE-eChhhHHHHhhhcCCCCCcEEEEC
Q psy2960         216 VVIQNGANSACGQNVIQIARHWG--LKTINIVRNRD-DIDKLKSYLKSL-GADYV-FTEEELRNISRDASIPKPKLALNC  290 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G--~~v~~~~~~~~-~~~~~~~~~~~l-g~~~v-~~~~d~~~i~~~t~g~g~Dvvld~  290 (405)
                      +|||.||+|.+|...++.+...|  .+|++..+... ....+.+.+... +...+ .|-.+...+.+...+..+|+||++
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~   80 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVVHF   80 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEEEc
Confidence            58999999999999999887776  56766543211 111112211111 11111 133332223333223358999999


Q ss_pred             CCc
Q psy2960         291 VGG  293 (405)
Q Consensus       291 ~g~  293 (405)
                      .+.
T Consensus        81 a~~   83 (317)
T TIGR01181        81 AAE   83 (317)
T ss_pred             ccc
Confidence            974

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=93.20  E-value=0.72  Score=38.00  Aligned_cols=32  Identities=16%  Similarity=0.214  Sum_probs=27.8

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      +|+|.|+ |++|...+..+...|...+.+++.+
T Consensus         1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            5899999 9999999999999999888887543

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK08317 hypothetical protein; Provisional

Probab=93.20  E-value=0.64  Score=41.61  Aligned_cols=99  Identities=18%  Similarity=0.264  Sum_probs=58.6

Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcC--CcEEEEecCCcchHHHHHHHHHc----CCcEEeChhhHHHHhhhcC
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSL----GADYVFTEEELRNISRDAS  280 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G--~~v~~~~~~~~~~~~~~~~~~~l----g~~~v~~~~d~~~i~~~t~  280 (405)
                      ....++++++||-.|+ | .|..+..+++..+  ++++++--+    +..++.+++.    +...-+...|..... . .
T Consensus        13 ~~~~~~~~~~vLdiG~-G-~G~~~~~~a~~~~~~~~v~~~d~~----~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~-~   84 (241)
T PRK08317         13 ELLAVQPGDRVLDVGC-G-PGNDARELARRVGPEGRVVGIDRS----EAMLALAKERAAGLGPNVEFVRGDADGLP-F-P   84 (241)
T ss_pred             HHcCCCCCCEEEEeCC-C-CCHHHHHHHHhcCCCcEEEEEeCC----HHHHHHHHHHhhCCCCceEEEecccccCC-C-C
Confidence            4468889999999999 3 4889999999874  466666433    3334444433    111111111211110 1 1


Q ss_pred             CCCCcEEEECCC-----c--hhHHHHHHhcccCCEEEEEe
Q psy2960         281 IPKPKLALNCVG-----G--NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       281 g~g~Dvvld~~g-----~--~~~~~~~~~l~~~G~~v~~g  313 (405)
                      ...+|+|+....     .  ..+....++|+++|.++...
T Consensus        85 ~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         85 DGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             CCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEe
Confidence            346898885432     2  23345679999999998765

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.19  E-value=0.92  Score=41.94  Aligned_cols=96  Identities=17%  Similarity=0.223  Sum_probs=68.6

Q ss_pred             ccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh
Q psy2960         192 SGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE  271 (405)
Q Consensus       192 a~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d  271 (405)
                      +.+||+....+..|....---.|++|+|.|.+.-||.=...++...||+|...- +..+                    |
T Consensus       136 ~~~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~ch-s~T~--------------------d  194 (282)
T PRK14180        136 CLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCH-RFTT--------------------D  194 (282)
T ss_pred             CcCCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEc-CCCC--------------------C
Confidence            456777776666666543234799999999999999999999999999875552 2111                    1


Q ss_pred             HHHHhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEec
Q psy2960         272 LRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       272 ~~~i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~  314 (405)
                      ..+   .+  +..|+|+-++|.+.+.. -+.+++|-.++.+|.
T Consensus       195 l~~---~~--k~ADIvIsAvGkp~~i~-~~~vk~gavVIDvGi  231 (282)
T PRK14180        195 LKS---HT--TKADILIVAVGKPNFIT-ADMVKEGAVVIDVGI  231 (282)
T ss_pred             HHH---Hh--hhcCEEEEccCCcCcCC-HHHcCCCcEEEEecc
Confidence            111   11  24699999999877633 378899999999984

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=93.19  E-value=0.69  Score=43.62  Aligned_cols=89  Identities=18%  Similarity=0.275  Sum_probs=56.0

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCC--cEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~--~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      .+|+|.|+ |.+|.+.+..++..|.  ++++..++    +...+.+.+.|...... .+..+.     -...|+||.|+.
T Consensus         7 ~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~----~~~~~~a~~~g~~~~~~-~~~~~~-----~~~aDvViiavp   75 (307)
T PRK07502          7 DRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRS----AETRARARELGLGDRVT-TSAAEA-----VKGADLVILCVP   75 (307)
T ss_pred             cEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECC----HHHHHHHHhCCCCceec-CCHHHH-----hcCCCEEEECCC
Confidence            67999997 9999999998888885  56655433    23355666777532111 111221     135799999998


Q ss_pred             chhHHHH----HHhcccCCEEEEEec
Q psy2960         293 GNSATNL----LRTLVSKGVMVTYGG  314 (405)
Q Consensus       293 ~~~~~~~----~~~l~~~G~~v~~g~  314 (405)
                      .......    ...++++..++.+|.
T Consensus        76 ~~~~~~v~~~l~~~l~~~~iv~dvgs  101 (307)
T PRK07502         76 VGASGAVAAEIAPHLKPGAIVTDVGS  101 (307)
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEeCcc
Confidence            7554332    245567777776664

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=93.17  E-value=0.21  Score=46.85  Aligned_cols=62  Identities=11%  Similarity=0.182  Sum_probs=40.2

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      +|||.||+|-+|...++.+...| +|+++.+...          .    ...|-.|.+.+.+...+.++|+||+|.+
T Consensus         2 ~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~----------~----~~~Dl~d~~~~~~~~~~~~~D~Vih~Aa   63 (299)
T PRK09987          2 NILLFGKTGQVGWELQRALAPLG-NLIALDVHST----------D----YCGDFSNPEGVAETVRKIRPDVIVNAAA   63 (299)
T ss_pred             eEEEECCCCHHHHHHHHHhhccC-CEEEeccccc----------c----ccCCCCCHHHHHHHHHhcCCCEEEECCc
Confidence            69999999999999999888888 7766643211          0    0113333222333322346899999876

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=93.14  E-value=0.27  Score=38.19  Aligned_cols=86  Identities=14%  Similarity=0.210  Sum_probs=57.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      .|.+|||.|+ |.+|..-++.+...||++++++...       +..+  +.-. +..+.+..   .  -.++|+|+-+++
T Consensus         6 ~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~vis~~~-------~~~~--~~i~-~~~~~~~~---~--l~~~~lV~~at~   69 (103)
T PF13241_consen    6 KGKRVLVVGG-GPVAARKARLLLEAGAKVTVISPEI-------EFSE--GLIQ-LIRREFEE---D--LDGADLVFAATD   69 (103)
T ss_dssp             TT-EEEEEEE-SHHHHHHHHHHCCCTBEEEEEESSE-------HHHH--TSCE-EEESS-GG---G--CTTESEEEE-SS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCch-------hhhh--hHHH-HHhhhHHH---H--HhhheEEEecCC
Confidence            5889999999 9999999999999999999887432       1111  1111 11222221   1  346899999999


Q ss_pred             chhHHHH-HHhcccCCEEEEEec
Q psy2960         293 GNSATNL-LRTLVSKGVMVTYGG  314 (405)
Q Consensus       293 ~~~~~~~-~~~l~~~G~~v~~g~  314 (405)
                      .+..... .+..+..|.++....
T Consensus        70 d~~~n~~i~~~a~~~~i~vn~~D   92 (103)
T PF13241_consen   70 DPELNEAIYADARARGILVNVVD   92 (103)
T ss_dssp             -HHHHHHHHHHHHHTTSEEEETT
T ss_pred             CHHHHHHHHHHHhhCCEEEEECC
Confidence            8888765 466677888888763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	405
2vcy_A	344	Crystal Structure Of 2-Enoyl Thioester Reductase Of		4e-83
1zsy_A	357	The Structure Of Human Mitochondrial 2-Enoyl Thioes		6e-83
1n9g_B	386	Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr		7e-52
1gu7_A	364	Enoyl Thioester Reductase From Candida Tropicalis L		8e-52
1h0k_A	364	Enoyl Thioester Reductase 2 Length = 364		8e-51
1n9g_A	386	Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr		8e-51
1gyr_A	364	Mutant Form Of Enoyl Thioester Reductase From Candi		1e-50
3gms_A	340	Crystal Structure Of Putative Nadph:quinone Reducta		3e-20
1yb5_A	351	Crystal Structure Of Human Zeta-crystallin With Bou		4e-12
1v3t_A	333	Crystal Structure Of Leukotriene B4 12- Hydroxydehy		1e-08
4a27_A	349	Crystal Structure Of Human Synaptic Vesicle Membran		1e-08
1rjw_A	339	Crystal Structure Of Nad(+)-Dependent Alcohol Dehyd		6e-08
3pii_A	339	Crystal Structure Of Mutant Of Ht- Alcohol Dehydrog		8e-08
2j8z_A	354	Crystal Structure Of Human P53 Inducible Oxidoreduc		1e-07
2oby_A	338	Crystal Structure Of Human P53 Inducible Oxidoreduc		1e-07
2y05_A	328	Crystal Structure Of Human Leukotriene B4 12-Hydrox		2e-07
1zsv_A	349	Crystal Structure Of Human Nadp-Dependent Leukotrie		2e-07
1llu_A	342	The Ternary Complex Of Pseudomonas Aeruginosa Alcoh		3e-07
3pi7_A	349	Crystal Structure Of A Putative Nadph:quinone Reduc		5e-07
1wly_A	333	Crystal Structure Of 2-haloacrylate Reductase Lengt		6e-07
2eih_A	343	Crystal Structure Of Nad-Dependent Alcohol Dehydrog		5e-06
3fbg_A	346	Crystal Structure Of A Putative Arginate Lyase From		2e-05
3tqh_A	321	Structure Of The Quinone Oxidoreductase From Coxiel		2e-05
3meq_A	365	Crystal Structure Of Alcohol Dehydrogenase From Bru		2e-04
3s1l_A	340	Crystal Structure Of Apo-Form Furx Length = 340		4e-04

>pdb|2VCY|A Chain A, Crystal Structure Of 2-Enoyl Thioester Reductase Of Human Fas Ii Length = 344

Iteration: 1
 Score =  305 bits (780), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 156/319 (48%), Positives = 204/319 (63%), Gaps = 8/319 (2%)
Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
           LVY  HG P +VV ++N  L +V+  +V VKML AP+NP+DIN IQG Y + P LPAV G
Sbjct: 17  LVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGG 76
Query: 136 FXXXXXXXXXXXXXXXLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGIT 195
                           L  GD VIP    LGTWR    F+ + L++VP DI L   + + 
Sbjct: 77  NEGVAQVVAVGSNVTGLKPGDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLG 136
Query: 196 SNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK 255
            NPCTAYRML D+  L PGD VIQN +NS  GQ VIQIA   GL+TIN+VR+R DI KL 
Sbjct: 137 VNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLS 196
Query: 256 SYLKSLGADYVFTEEELR-----NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMV 310
             LKSLGA++V TEEELR     N  +D  +P+P+LALNCVGG S+T LLR L   G MV
Sbjct: 197 DRLKSLGAEHVITEEELRRPEMKNFFKD--MPQPRLALNCVGGKSSTELLRQLARGGTMV 254
Query: 311 TYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA 370
           TYGGM+++PV    S  IFKD+ LRG W+++W+K++    + K ++  L +++R G+L A
Sbjct: 255 TYGGMAKQPVVASVSLLIFKDLKLRGFWLSQWKKDHSPD-QFKELILTLCDLIRRGQLTA 313
Query: 371 PAHKFVTLKNFQEALMNTM 389
           PA   V L+++Q AL  +M
Sbjct: 314 PACSQVPLQDYQSALEASM 332

>pdb|1ZSY|A Chain A, The Structure Of Human Mitochondrial 2-Enoyl Thioester Reductase (Cgi- 63) Length = 357

Iteration: 1
 Score =  304 bits (779), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 156/319 (48%), Positives = 204/319 (63%), Gaps = 8/319 (2%)
Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
           LVY  HG P +VV ++N  L +V+  +V VKML AP+NP+DIN IQG Y + P LPAV G
Sbjct: 30  LVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGG 89
Query: 136 FXXXXXXXXXXXXXXXLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGIT 195
                           L  GD VIP    LGTWR    F+ + L++VP DI L   + + 
Sbjct: 90  NEGVAQVVAVGSNVTGLKPGDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLG 149
Query: 196 SNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK 255
            NPCTAYRML D+  L PGD VIQN +NS  GQ VIQIA   GL+TIN+VR+R DI KL 
Sbjct: 150 VNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLS 209
Query: 256 SYLKSLGADYVFTEEELR-----NISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMV 310
             LKSLGA++V TEEELR     N  +D  +P+P+LALNCVGG S+T LLR L   G MV
Sbjct: 210 DRLKSLGAEHVITEEELRRPEMKNFFKD--MPQPRLALNCVGGKSSTELLRQLARGGTMV 267
Query: 311 TYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA 370
           TYGGM+++PV    S  IFKD+ LRG W+++W+K++    + K ++  L +++R G+L A
Sbjct: 268 TYGGMAKQPVVASVSLLIFKDLKLRGFWLSQWKKDHSPD-QFKELILTLCDLIRRGQLTA 326
Query: 371 PAHKFVTLKNFQEALMNTM 389
           PA   V L+++Q AL  +M
Sbjct: 327 PACSQVPLQDYQSALEASM 345

>pdb|1N9G|B Chain B, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p Heterodimer From Candida Tropicalis Length = 386

Iteration: 1
 Score =  201 bits (510), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 127/329 (38%), Positives = 179/329 (54%), Gaps = 37/329 (11%)
Query: 73  ANKLVYNQHGTPLRVVTVENETLN--SVQKHEVVVKMLVAPVNPADINTIQGVYPIKP-- 128
           A  ++Y QHG P  V+  ++  ++  ++  +EV+VK L +PVNP+DIN IQGVYP KP  
Sbjct: 26  AQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAK 85
Query: 129 ------TLPAVP-GFXXXXXXXXXXXXXXXLAVGDHVIPDTQHLGTWRNYGKFNHDVLMK 181
                 T PA P G                L  GD VIP   + GTWR +   N D  +K
Sbjct: 86  TTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIK 145
Query: 182 VPK-----------DIALTEISGITSNPCTAYRMLKDYNSLSPG-DVVIQNGANSACGQN 229
           +P             + + + + I+ NP TAY ML  Y  L+PG D  IQNG  SA G+ 
Sbjct: 146 LPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKY 205
Query: 230 VIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRD----------A 279
             QI +     +I+++R+R ++D++ + LK LGA  V TE++  N SR+           
Sbjct: 206 ASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQ--NNSREFGPTIKEWIKQ 263
Query: 280 SIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWM 339
           S  + KLALNCVGG S+T + R L + G+M+TYGGMS +PV IPTS +IFK+ T  G W+
Sbjct: 264 SGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWV 323
Query: 340 TRWQKENKESAERKSMMNELTEMMRTGKL 368
           T   K NKE   + S +N++      GKL
Sbjct: 324 TELLKNNKEL--KTSTLNQIIAWYEEGKL 350

>pdb|1GU7|A Chain A, Enoyl Thioester Reductase From Candida Tropicalis Length = 364

Iteration: 1
 Score =  201 bits (510), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 127/329 (38%), Positives = 179/329 (54%), Gaps = 37/329 (11%)
Query: 73  ANKLVYNQHGTPLRVVTVENETLN--SVQKHEVVVKMLVAPVNPADINTIQGVYPIKP-- 128
           A  ++Y QHG P  V+  ++  ++  ++  +EV+VK L +PVNP+DIN IQGVYP KP  
Sbjct: 4   AQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAK 63
Query: 129 ------TLPAVP-GFXXXXXXXXXXXXXXXLAVGDHVIPDTQHLGTWRNYGKFNHDVLMK 181
                 T PA P G                L  GD VIP   + GTWR +   N D  +K
Sbjct: 64  TTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIK 123
Query: 182 VPK-----------DIALTEISGITSNPCTAYRMLKDYNSLSPG-DVVIQNGANSACGQN 229
           +P             + + + + I+ NP TAY ML  Y  L+PG D  IQNG  SA G+ 
Sbjct: 124 LPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKY 183
Query: 230 VIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRD----------A 279
             QI +     +I+++R+R ++D++ + LK LGA  V TE++  N SR+           
Sbjct: 184 ASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQ--NNSREFGPTIKEWIKQ 241
Query: 280 SIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWM 339
           S  + KLALNCVGG S+T + R L + G+M+TYGGMS +PV IPTS +IFK+ T  G W+
Sbjct: 242 SGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWV 301
Query: 340 TRWQKENKESAERKSMMNELTEMMRTGKL 368
           T   K NKE   + S +N++      GKL
Sbjct: 302 TELLKNNKEL--KTSTLNQIIAWYEEGKL 328

>pdb|1H0K|A Chain A, Enoyl Thioester Reductase 2 Length = 364

Iteration: 1
 Score =  197 bits (501), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 122/327 (37%), Positives = 176/327 (53%), Gaps = 33/327 (10%)
Query: 73  ANKLVYNQHGTPLRVVTVENETLN--SVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTL 130
           A  ++Y QHG P  V+  ++  ++  ++  +EV+VK L +P+NP+DIN IQGVYP KP  
Sbjct: 4   AQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPINPSDINQIQGVYPSKPAK 63
Query: 131 --------PAVP-GFXXXXXXXXXXXXXXXLAVGDHVIPDTQHLGTWRNYGKFNHDVLMK 181
                   PA P G                L  GD VIP   + GTWR +   N D  +K
Sbjct: 64  TTGFGTAEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIK 123
Query: 182 VPK-----------DIALTEISGITSNPCTAYRMLKDYNSLSPG-DVVIQNGANSACGQN 229
           +P             + + + + I+ NP TAY ML  Y  L+PG D  IQNG  SA G+ 
Sbjct: 124 LPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKY 183
Query: 230 VIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPK------ 283
             QI +     +I+++R+R ++D++ + LK LGA  V TE++  +     +I +      
Sbjct: 184 ASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSKEFGPTIKEWIKQSG 243
Query: 284 --PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTR 341
              KLALNCVGG S+T + R L + G+M+TYGGMS +PV IPTS +IFK+ T  G W+T 
Sbjct: 244 GEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTE 303
Query: 342 WQKENKESAERKSMMNELTEMMRTGKL 368
             K NKE   + S +N++      GKL
Sbjct: 304 LLKNNKEL--KTSTLNQIIAWYEEGKL 328

>pdb|1N9G|A Chain A, Mitochondrial 2-enoyl Thioester Reductase Etr1p/etr2p Heterodimer From Candida Tropicalis Length = 386

Iteration: 1
 Score =  197 bits (501), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 122/327 (37%), Positives = 176/327 (53%), Gaps = 33/327 (10%)
Query: 73  ANKLVYNQHGTPLRVVTVENETLN--SVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTL 130
           A  ++Y QHG P  V+  ++  ++  ++  +EV+VK L +P+NP+DIN IQGVYP KP  
Sbjct: 26  AQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPINPSDINQIQGVYPSKPAK 85
Query: 131 --------PAVP-GFXXXXXXXXXXXXXXXLAVGDHVIPDTQHLGTWRNYGKFNHDVLMK 181
                   PA P G                L  GD VIP   + GTWR +   N D  +K
Sbjct: 86  TTGFGTAEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIK 145
Query: 182 VPK-----------DIALTEISGITSNPCTAYRMLKDYNSLSPG-DVVIQNGANSACGQN 229
           +P             + + + + I+ NP TAY ML  Y  L+PG D  IQNG  SA G+ 
Sbjct: 146 LPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKY 205
Query: 230 VIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPK------ 283
             QI +     +I+++R+R ++D++ + LK LGA  V TE++  +     +I +      
Sbjct: 206 ASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSKEFGPTIKEWIKQSG 265
Query: 284 --PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTR 341
              KLALNCVGG S+T + R L + G+M+TYGGMS +PV IPTS +IFK+ T  G W+T 
Sbjct: 266 GEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTE 325
Query: 342 WQKENKESAERKSMMNELTEMMRTGKL 368
             K NKE   + S +N++      GKL
Sbjct: 326 LLKNNKEL--KTSTLNQIIAWYEEGKL 350

>pdb|1GYR|A Chain A, Mutant Form Of Enoyl Thioester Reductase From Candida Tropicalis Length = 364

Iteration: 1
 Score =  197 bits (500), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 126/329 (38%), Positives = 178/329 (54%), Gaps = 37/329 (11%)
Query: 73  ANKLVYNQHGTPLRVVTVENETLN--SVQKHEVVVKMLVAPVNPADINTIQGVYPIKP-- 128
           A  ++Y QHG P  V+  ++  ++  ++  +EV+VK L +PVNP+DIN IQGV P KP  
Sbjct: 4   AQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVNPSKPAK 63
Query: 129 ------TLPAVP-GFXXXXXXXXXXXXXXXLAVGDHVIPDTQHLGTWRNYGKFNHDVLMK 181
                 T PA P G                L  GD VIP   + GTWR +   N D  +K
Sbjct: 64  TTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIK 123
Query: 182 VPK-----------DIALTEISGITSNPCTAYRMLKDYNSLSPG-DVVIQNGANSACGQN 229
           +P             + + + + I+ NP TAY ML  Y  L+PG D  IQNG  SA G+ 
Sbjct: 124 LPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKY 183
Query: 230 VIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRD----------A 279
             QI +     +I+++R+R ++D++ + LK LGA  V TE++  N SR+           
Sbjct: 184 ASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQ--NNSREFGPTIKEWIKQ 241
Query: 280 SIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWM 339
           S  + KLALNCVGG S+T + R L + G+M+TYGGMS +PV IPTS +IFK+ T  G W+
Sbjct: 242 SGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWV 301
Query: 340 TRWQKENKESAERKSMMNELTEMMRTGKL 368
           T   K NKE   + S +N++      GKL
Sbjct: 302 TELLKNNKEL--KTSTLNQIIAWYEEGKL 328

>pdb|3GMS|A Chain A, Crystal Structure Of Putative Nadph:quinone Reductase From Bacillus Thuringiensis Length = 340

Iteration: 1
 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 131/292 (44%), Gaps = 31/292 (10%)
Query: 72  LANKLV-YNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTL 130
           L  KL+ +++ G P  V+ VE + +  ++ +EV V+MLV P+NP+D+  I G Y  +  L
Sbjct: 3   LHGKLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPL 62
Query: 131 PAVPGFXXXXXXXXXXXXXXXLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTE 190
           P +PG+                 +G  V+P  +  GTW+ Y K + D ++ +P  I    
Sbjct: 63  PNIPGYEGVGIVENVGAFVSRELIGKRVLP-LRGEGTWQEYVKTSADFVVPIPDSIDDFT 121
Query: 191 ISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD 250
            + +  NP TA+    +  +L   DV++ N   SA G    Q+++    + I + RN   
Sbjct: 122 AAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRN--- 178
Query: 251 IDKLKSYLKSLGADYVF---------TEEELRN-ISRDASIPKPKLALNCVGGNSATNLL 300
            +K    L  LGA YV          T  EL N I  DA       A++ +GG     L 
Sbjct: 179 -NKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADA-------AIDSIGGPDGNELA 230
Query: 301 RTLVSKGVMVTYG---GMSREPVQIPTSAFIFKDITLRGHWMT-----RWQK 344
            +L   G  +T G   G+     +I T A +  +I    HW       +WQ+
Sbjct: 231 FSLRPNGHFLTIGLLSGIQVNWAEIVTKAKVHANIFHLRHWNDEVSPYKWQE 282

>pdb|1YB5|A Chain A, Crystal Structure Of Human Zeta-crystallin With Bound Nadp Length = 351

Iteration: 1
 Score = 69.3 bits (168), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 79/203 (38%), Gaps = 20/203 (9%)
Query: 99  QKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFXXXXXXXXXXXXXXXLAVGDHV 158
           + H+V++K+    VNP +     G Y  KP LP  PG                   GD V
Sbjct: 56  KDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRV 115
Query: 159 IPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVI 218
              +   G +  Y       + K+P+ +   + + I     TAYR L     +  G+ V+
Sbjct: 116 FTSSTISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVL 175
Query: 219 QNGANSACGQNVIQIARHWGLKTINIV--------------------RNRDDIDKLKSYL 258
            +GA+   G    QIAR +GLK +                       R  + IDK+K Y+
Sbjct: 176 VHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYV 235
Query: 259 KSLGADYVFTEEELRNISRDASI 281
              G D +       N+S+D S+
Sbjct: 236 GEKGIDIIIEMLANVNLSKDLSL 258

>pdb|1V3T|A Chain A, Crystal Structure Of Leukotriene B4 12- Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase Length = 333

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 95/237 (40%), Gaps = 35/237 (14%)
Query: 172 GKFNHDVLMKVPKDIALTEISGITSNP-CTAYRMLKDYNSLSPGDVVIQNGANSACGQNV 230
           GK    +L + P  + L+   G    P  TAY  L +   +  G+ V+ + A  A G  V
Sbjct: 103 GKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVV 162
Query: 231 IQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT-------EEELRNISRDASIPK 283
            QIA+  G K +    + + I    +YLK +G D  F        EE L+  S D     
Sbjct: 163 GQIAKLKGCKVVGAAGSDEKI----AYLKQIGFDAAFNYKTVNSLEEALKKASPDG---- 214
Query: 284 PKLALNCVGGNSATNLLRTLVSK----------GVMVTYGGMSREPVQIPTSAFIFKDIT 333
                +C   N     L T++S+          G +  Y  M + P      + I+K + 
Sbjct: 215 ----YDCYFDNVGGEFLNTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLR 270
Query: 334 LRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMS 390
           + G  + RWQ + +E A R     +L + +  GK+    H     +N   A +  ++
Sbjct: 271 IEGFIVYRWQGDVREKALR-----DLMKWVLEGKIQYHEHVTKGFENMPAAFIEMLN 322

>pdb|4A27|A Chain A, Crystal Structure Of Human Synaptic Vesicle Membrane Protein Vat-1 Homolog-Like Protein Length = 349

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 115/294 (39%), Gaps = 29/294 (9%)
Query: 99  QKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFXXXXXXXXXXXXXXXLAVGDHV 158
           Q  E+ +++    +N  D+   QG     P  P VPGF                 +GD V
Sbjct: 29  QDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKGYEIGDRV 88
Query: 159 IPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVI 218
           +    +   W        + + K+P D++ +E +    N  TAY ML +  +L  G  V+
Sbjct: 89  MAFVNY-NAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVL 147
Query: 219 QNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK---SYLKSLGADYVFTEEELRNI 275
            + A    GQ V Q+       T+    +    + +K   ++L    ADYV   +E++ I
Sbjct: 148 VHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHEAIKDSVTHLFDRNADYV---QEVKRI 204
Query: 276 SRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLR 335
           S +       + L+C+ G++    L  L   G  + YG  S   V   T +F     +  
Sbjct: 205 SAEGV----DIVLDCLCGDNTGKGLSLLKPLGTYILYG--SSNMVTGETKSF----FSFA 254
Query: 336 GHWMTRWQKEN----KESAERK-----SMMNELTEMMRTGKLAAPAHKFVTLKN 380
             W   WQ E     K   E K     S++N L +  R G +     K + L N
Sbjct: 255 KSW---WQVEKVNPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYN 305

>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol Dehydrogenase From Bacillus Stearothermophilus Strain Lld-R Length = 339

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 84/217 (38%), Gaps = 36/217 (16%)
Query: 77  VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGF 136
           V  Q   PL++  VE  T++     EV+V++    V   D++   G +P+KP LP +PG 
Sbjct: 5   VVEQFKEPLKIKEVEKPTISY---GEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61
Query: 137 XXXXXXXXXXXXXXXLAVGDHV-IP----DTQHL----------------------GTWR 169
                          L VGD V IP       H                       G + 
Sbjct: 62  EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYA 121
Query: 170 NYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQN 229
            Y +   D ++K+P +++  E + I     T Y+ LK      PG+ V   G     G  
Sbjct: 122 EYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALK-VTGAKPGEWVAIYGIGGL-GHV 179
Query: 230 VIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV 266
            +Q A+  GL  + +    D  D+     K LGAD V
Sbjct: 180 AVQYAKAMGLNVVAV----DIGDEKLELAKELGADLV 212

>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase With Substrate Analogue Butyramide Length = 339

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 84/217 (38%), Gaps = 36/217 (16%)
Query: 77  VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGF 136
           V  Q   PL++  VE  T++     EV+V++    V   D++   G +P+KP LP +PG 
Sbjct: 5   VVEQFKEPLKIKEVEKPTISY---GEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61
Query: 137 XXXXXXXXXXXXXXXLAVGDHV-IP----DTQHL----------------------GTWR 169
                          L VGD V IP       H                       G + 
Sbjct: 62  EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYA 121
Query: 170 NYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQN 229
            Y +   D ++K+P +++  E + I     T Y+ LK      PG+ V   G     G  
Sbjct: 122 EYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALK-VTGAKPGEWVAIYGIGGF-GHV 179
Query: 230 VIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV 266
            +Q A+  GL  + +    D  D+     K LGAD V
Sbjct: 180 AVQYAKAMGLNVVAV----DIGDEKLELAKELGADLV 212

>pdb|2J8Z|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase ( Tp53i3,Pig3) Length = 354

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/270 (22%), Positives = 112/270 (41%), Gaps = 21/270 (7%)
Query: 102 EVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFXXXXXXXXXXXXXXXLAVGDHVIPD 161
           EV++K+  + +N AD+   QG Y   P    + G                   G   I D
Sbjct: 51  EVLLKVAASALNRADLMQRQGQYDPPPGASNILGLEASGHVAELGPGCQ----GHWKIGD 106
Query: 162 TQHL----GTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVV 217
           T       G    Y      +LM +P+ + LT+ + I     TA+++L    ++  GD V
Sbjct: 107 TAMALLPGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYV 166
Query: 218 IQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEELRN 274
           + +   S  G   IQ+ R  G   +    ++  +   +    + G +Y    F+E  L+ 
Sbjct: 167 LIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLK- 225
Query: 275 ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPT-SAFIFKDIT 333
            ++ A +    L L+C+GG+     +  L   G  V YG M    +  P  S  +FK   
Sbjct: 226 FTKGAGV---NLILDCIGGSYWEKNVNCLALDGRWVLYGLMGGGDINGPLFSKLLFK--- 279
Query: 334 LRGHWMTRWQKENKESAERKSMMNELTEMM 363
            RG  +T   + ++++  ++ ++N  TE +
Sbjct: 280 -RGSLITSLLR-SRDNKYKQMLVNAFTEQI 307

>pdb|2OBY|A Chain A, Crystal Structure Of Human P53 Inducible Oxidoreductase (Tp53i3,Pig3) Length = 338

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 114/275 (41%), Gaps = 21/275 (7%)
Query: 97  SVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFXXXXXXXXXXXXXXXLAVGD 156
           S  + EV++K+  + +N AD+   QG Y   P    + G                   G 
Sbjct: 30  SPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNILGLEASGHVAELGPGCQ----GH 85
Query: 157 HVIPDTQHL----GTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLS 212
             I DT       G    Y      +LM +P+ + LT+ + I     TA+++L    ++ 
Sbjct: 86  WKIGDTAMALLPGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQ 145
Query: 213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTE 269
            GD V+ +   S  G   IQ+ R  G   +    ++  +   +    + G +Y    F+E
Sbjct: 146 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSE 205
Query: 270 EELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPT-SAFI 328
             L+  ++ A +    L L+C+GG+     +  L   G  V YG M    +  P  S  +
Sbjct: 206 ATLK-FTKGAGV---NLILDCIGGSYWEKNVNCLALDGRWVLYGLMGGGDINGPLFSKLL 261
Query: 329 FKDITLRGHWMTRWQKENKESAERKSMMNELTEMM 363
           FK    RG  +T   + ++++  ++ ++N  TE +
Sbjct: 262 FK----RGSLITSLLR-SRDNKYKQMLVNAFTEQI 291

>pdb|2Y05|A Chain A, Crystal Structure Of Human Leukotriene B4 12-Hydroxydehydrogenase In Complex With Nadp And Raloxifene Length = 328

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 95/228 (41%), Gaps = 19/228 (8%)
Query: 172 GKFNHDVLMKVPKDIALTEISGITSNP-CTAYRMLKDYNSLSPGDVVIQNGANSACGQNV 230
           GK    +L + P  I L+   G    P  TAY  L +   +  G+ V+ N A  A G  V
Sbjct: 98  GKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVV 157
Query: 231 IQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEEELRNISRDASIPKPKLA 287
            QIA+  G K +  V + + +    +YL+ LG D VF   T E L    + AS       
Sbjct: 158 GQIAKLKGCKVVGAVGSDEKV----AYLQKLGFDVVFNYKTVESLEETLKKASPDGYDCY 213
Query: 288 LNCVGGNSATNLLRTLVSKGVMVTYGGMS------REPVQIPTSAFIFKDITLRGHWMTR 341
            + VGG  +  ++  +   G +   G +S        P   P    I++++ +    + R
Sbjct: 214 FDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEAFVVYR 273
Query: 342 WQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTM 389
           WQ + ++ A     + +L + +  GK+    +     +N   A M  +
Sbjct: 274 WQGDARQKA-----LKDLLKWVLEGKIQYKEYIIEGFENMPAAFMGML 316

>pdb|1ZSV|A Chain A, Crystal Structure Of Human Nadp-Dependent Leukotriene B4 12- Hydroxydehydrogenase Length = 349

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/228 (24%), Positives = 95/228 (41%), Gaps = 19/228 (8%)
Query: 172 GKFNHDVLMKVPKDIALTEISGITSNP-CTAYRMLKDYNSLSPGDVVIQNGANSACGQNV 230
           GK    +L + P  I L+   G    P  TAY  L +   +  G+ V+ N A  A G  V
Sbjct: 119 GKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVV 178
Query: 231 IQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEEELRNISRDASIPKPKLA 287
            QIA+  G K +  V + + +    +YL+ LG D VF   T E L    + AS       
Sbjct: 179 GQIAKLKGCKVVGAVGSDEKV----AYLQKLGFDVVFNYKTVESLEETLKKASPDGYDCY 234
Query: 288 LNCVGGNSATNLLRTLVSKGVMVTYGGMS------REPVQIPTSAFIFKDITLRGHWMTR 341
            + VGG  +  ++  +   G +   G +S        P   P    I++++ +    + R
Sbjct: 235 FDNVGGEFSNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEAFVVYR 294
Query: 342 WQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTM 389
           WQ + ++ A     + +L + +  GK+    +     +N   A M  +
Sbjct: 295 WQGDARQKA-----LKDLLKWVLEGKIQYKEYIIEGFENMPAAFMGML 337

>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol Dehydrogenase With Its Coenzyme And Weak Substrate Length = 342

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 113/301 (37%), Gaps = 68/301 (22%)
Query: 77  VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGF 136
           V + +G PLR+  V+       Q   V+VK+  + V   D++  +G +P+KP LP +PG 
Sbjct: 11  VVHAYGAPLRIEEVKVPLPGPGQ---VLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGH 67
Query: 137 XXXXXXXXXXXXXXXLAVGDHV-IP--------------------DTQHLGTWRNYGKFN 175
                          +  GD V IP                    ++Q    +   G + 
Sbjct: 68  EGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGYSVNGGYA 127
Query: 176 HDVLMK------VPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQN 229
             VL        +PK++   EI+ I     T Y+ LK  N+  PG  V  +G     G  
Sbjct: 128 EYVLADPNYVGILPKNVEFAEIAPILCAGVTVYKGLKQTNA-RPGQWVAISGIGG-LGHV 185
Query: 230 VIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVFT---EEELRNISRDASIPKPK 285
            +Q AR  GL    I     DID  K  L + LGA        E+ +  I RD       
Sbjct: 186 AVQYARAMGLHVAAI-----DIDDAKLELARKLGASLTVNARQEDPVEAIQRD------- 233
Query: 286 LALNCVGGNSATNLLRTLVSKGVMVTYGGMSRE----------PVQIPTSAFIFKDITLR 335
                +GG  A  +L T VS        GM+R           P   PT  F   D+ L+
Sbjct: 234 -----IGG--AHGVLVTAVSNSAFGQAIGMARRGGTIALVGLPPGDFPTPIF---DVVLK 283
Query: 336 G 336
           G
Sbjct: 284 G 284

>pdb|3PI7|A Chain A, Crystal Structure Of A Putative Nadph:quinone Reductase (Mll3093) From Mesorhizobium Loti At 1.71 A Resolution Length = 349

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 109/263 (41%), Gaps = 30/263 (11%)
Query: 102 EVVVKMLVAPVNPADINTIQGVYPIKPTLPAVP-GFXXXXXXXXXXXXXXXLA-VGDHVI 159
           +V++K+ +A +NP+D+  I+G Y  +P +   P GF                + VG  V 
Sbjct: 51  QVLIKVNLASINPSDVAFIKGQYG-QPRVKGRPAGFEGVGTIVAGGDEPYAKSLVGKRVA 109
Query: 160 PDT--QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVV 217
             T   + G+W  Y        + +   +   + +    NP TA               V
Sbjct: 110 FATGLSNWGSWAEYAVAEAAACIPLLDTVRDEDGAAXIVNPLTAIAXFDIVKQEGEKAFV 169
Query: 218 IQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE------ 271
              GA+  C + +I +A+  G + I  VR  + I    + LK +GA +V  E+       
Sbjct: 170 XTAGASQLC-KLIIGLAKEEGFRPIVTVRRDEQI----ALLKDIGAAHVLNEKAPDFEAT 224
Query: 272 LRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMS------REPVQIPTS 325
           LR + +     +P++ L+ V G  A+ +      +   + YG +       REP Q+   
Sbjct: 225 LREVXKAE---QPRIFLDAVTGPLASAIFNAXPKRARWIIYGRLDPDATVIREPGQL--- 278
Query: 326 AFIFKDITLRGHWMTRWQKENKE 348
             IF+   + G W++ W ++ KE
Sbjct: 279 --IFQHKHIEGFWLSEWXRQFKE 299

>pdb|1WLY|A Chain A, Crystal Structure Of 2-haloacrylate Reductase Length = 333

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 110/269 (40%), Gaps = 34/269 (12%)
Query: 131 PAVPGFXXXXXXXXXXXXXXXLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTE 190
           P V GF                 VG+ V      LG +     +  + L+KVPKD+ L +
Sbjct: 61  PIVVGFEAAAVVEEVGPGVTDFTVGERVCTCLPPLGAYSQERLYPAEKLIKVPKDLDLDD 120
Query: 191 I--SGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR 248
           +  +G+     TA  +L   + + PGD V+ + A    G  ++  ARH G   I  V   
Sbjct: 121 VHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTE 180
Query: 249 DDIDKLKSYLKSLGADYV--FTEEELRNISRDASIPKP-KLALNCVGGNSATNLLRTLVS 305
           +  +      + LG  +   ++ ++   + R+ +  K   +  + +G ++    L  L  
Sbjct: 181 EKAET----ARKLGCHHTINYSTQDFAEVVREITGGKGVDVVYDSIGKDTLQKSLDCLRP 236
Query: 306 KGVMVTYGGMS--REPVQIPTSAFIFKDITLRGH-WMTR---WQKENKESAERKSMMNEL 359
           +G+   YG  S   +P++      + +D+ +RG  ++TR   W   +  S E       L
Sbjct: 237 RGMCAAYGHASGVADPIR------VVEDLGVRGSLFITRPALWHYMSNRS-EIDEGSKCL 289
Query: 360 TEMMRTGKL------------AAPAHKFV 376
            + ++ G L            AA AHK++
Sbjct: 290 FDAVKAGVLHSSVAKTFPLREAAAAHKYM 318

>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase Length = 343

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 82/215 (38%), Gaps = 31/215 (14%)
Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
           +V    G P  V+ V +  +      EV V++  A +N  D+   +GV   K  LP V G
Sbjct: 4   VVMRARGGP-EVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVLG 62
Query: 136 FXXXXXXXXXXXXXXXLAVGDHVI---------------------PDTQHLG-----TWR 169
                            A GD V+                     P  Q LG     T+ 
Sbjct: 63  ADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHGTYA 122
Query: 170 NYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQN 229
            Y       L   PK+++  E + I     TA++M+ D   + PGD V+   A S     
Sbjct: 123 EYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVA 182
Query: 230 VIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD 264
            IQIA+ +G + I    + D + +     K+LGAD
Sbjct: 183 AIQIAKLFGARVIATAGSEDKLRR----AKALGAD 213

>pdb|3FBG|A Chain A, Crystal Structure Of A Putative Arginate Lyase From Staphylococcus Haemolyticus Length = 346

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 73/182 (40%), Gaps = 21/182 (11%)
Query: 101 HEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFXXXXXXXXXXXXXXXLAVGDHVI- 159
           HE++VK+    VNP D  T Q +  +    P V GF                  GD V  
Sbjct: 33  HEILVKIQSISVNPVD--TKQRLMDVSKA-PRVLGFDAIGVVESVGNEVTMFNQGDIVYY 89
Query: 160 ---PDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPG-- 214
              PD    G+   Y   N  ++ K PK+I+  +   +     TAY  L D   +S    
Sbjct: 90  SGSPDQN--GSNAEYQLINERLVAKAPKNISAEQAVSLPLTGITAYETLFDVFGISRNRN 147
Query: 215 -----DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE 269
                 ++I NGA    G    QIA+ +GL+ I      + I+    + K +GAD V   
Sbjct: 148 ENEGKTLLIINGA-GGVGSIATQIAKAYGLRVITTASRNETIE----WTKKMGADIVLNH 202
Query: 270 EE 271
           +E
Sbjct: 203 KE 204

>pdb|3TQH|A Chain A, Structure Of The Quinone Oxidoreductase From Coxiella Burnetii Length = 321

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/312 (21%), Positives = 128/312 (41%), Gaps = 28/312 (8%)
Query: 78  YNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQG----VYPIKPTLPAV 133
           ++Q G P +V+ + +      +K++ ++K+  A +NP D  T  G       +K  LP+ 
Sbjct: 12  FDQFGPP-KVLKLVDTPTPEYRKNQXLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSG 70
Query: 134 PGFXXXXXXXXXXXXXXXLAVGDHV-----IPDTQHLGTWRNYGKFNHDVLMKVPKDIAL 188
            G+               + +GD V      PD  H   +  Y   + D +++  + ++ 
Sbjct: 71  LGYDFSGEVIELGSDVNNVNIGDKVXGIAGFPD--HPCCYAEYVCASPDTIIQKLEKLSF 128
Query: 189 TEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR 248
            + + + +   TA + L +   +  GDVV+ +      G   IQ+A+  G   I     R
Sbjct: 129 LQAASLPTAGLTALQAL-NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKR 187
Query: 249 DDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGV 308
           +      ++LK+LGA+      E  +     S P   + ++ VGG+     +  L   G 
Sbjct: 188 N-----HAFLKALGAEQCINYHE-EDFLLAISTPVDAV-IDLVGGDVGIQSIDCLKETGC 240
Query: 309 MV-----TYGGMSREPVQIPTSAF-IFKDITLRG-HWMTRWQKENKESAERKSMMNELTE 361
           +V     T G +     Q    AF + K   +   H++ +   E+K   E  S + +L+E
Sbjct: 241 IVSVPTITAGRVIEVAKQKHRRAFGLLKQFNIEELHYLGKLVSEDKLRIEI-SRIFQLSE 299
Query: 362 MMRTGKLAAPAH 373
            +   +L    H
Sbjct: 300 AVTAHELLETGH 311

>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella Mel Length = 365

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 124/323 (38%), Gaps = 50/323 (15%)
Query: 51  MSTELCTYISLLDTSARGFSYLANKL---VYNQHGTPLRVVTVENETLNSVQKHEVVVKM 107
           M+     ++  L+   +G   +A  +   V    G PL   T++   +      ++ V +
Sbjct: 1   MAHHHHHHMGTLEAQTQGPGSMAKTMKAAVVRAFGKPL---TIDEVPIPQPGPGQIQVAI 57
Query: 108 LVAPVNPADINTIQGVYPIKPTLPAVPGFXXXXXXXXXXXXXXXLAVGDHV-IP------ 160
             + V   D++  +G +P+KP  P +PG                +  GD V IP      
Sbjct: 58  QASGVCHTDLHAAEGDWPVKPNPPFIPGHEGVGFVSAVGSGVKHVKEGDRVGIPWLYTAC 117
Query: 161 -DTQH-LGTWRNY------------GKFNHDVLMK------VPKDIALTEISGITSNPCT 200
              +H LG W               G F   V+        +PK+I   EI+ +     T
Sbjct: 118 GHCRHCLGGWETLCEEQLNTGYSVNGGFAEYVVADPNFVGHLPKNIDFNEIAPVLCAGVT 177
Query: 201 AYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-K 259
            Y+ LK  ++  PGD V+ +G     G   +Q AR  GL    +     DID  K  L +
Sbjct: 178 VYKGLKVTDT-KPGDWVVISGI-GGLGHMAVQYARAMGLNVAAV-----DIDDRKLDLAR 230
Query: 260 SLGADYVFTEEELRN----ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGM 315
            LGA      + + +    I ++       + +  V   +    L  +V++G  V+  G+
Sbjct: 231 RLGATVTVNAKTVADPAAYIRKETDGGAQGVLVTAVSPKAFEQAL-GMVARGGTVSLNGL 289
Query: 316 SREPVQIPTSAF--IFKDITLRG 336
              P   P S F  +   +T+RG
Sbjct: 290 P--PGDFPLSIFNMVLNGVTVRG 310

>pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx Length = 340

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 113/300 (37%), Gaps = 61/300 (20%)
Query: 77  VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGF 136
           V    G PL   T++   +      +V VK+  + V   D++   G +P+KPTLP +PG 
Sbjct: 7   VVRAFGAPL---TIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGH 63
Query: 137 XXXXXXXXXXXXXXXLAVGDHV-IP-------DTQH-LGTWR---------------NYG 172
                          +  GD V +P         +H L  W                 YG
Sbjct: 64  EGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTGYSVNGGYG 123
Query: 173 KF---NHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQN 229
           ++   + + +  +P  +   EI+ I     T Y+ LK  ++  PG  V+ +G     G  
Sbjct: 124 EYVVADPNYVGLLPDKVGFVEIAPILCAGVTVYKGLKVTDT-RPGQWVVISGIG-GLGHV 181
Query: 230 VIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVFTEEELRNISRDASIPKPKLAL 288
            +Q AR  GL+   +     DID  K  L + LGA+        R+    A + K     
Sbjct: 182 AVQYARAMGLRVAAV-----DIDDAKLNLARRLGAEVAVNA---RDTDPAAWLQKE---- 229
Query: 289 NCVGGNSATNLLRTLVS------------KGVMVTYGGMSREPVQIPTSAFIFKDITLRG 336
             +GG  A  +L T VS            +G  +   G+       P    + K IT+RG
Sbjct: 230 --IGG--AHGVLVTAVSPKAFSQAIGMVRRGGTIALNGLPPGDFGTPIFDVVLKGITIRG 285

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	405
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	1e-123
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	1e-114
3gms_A	340	Putative NADPH:quinone reductase; structural genom	9e-78
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	2e-76
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	5e-45
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	1e-37
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	6e-37
4eye_A	342	Probable oxidoreductase; structural genomics, niai	2e-36
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	2e-35
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	2e-35
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	2e-35
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	3e-35
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	6e-35
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	3e-34
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	2e-33
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	4e-33
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	3e-32
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	7e-32
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	2e-31
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	4e-31
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	2e-30
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	3e-30
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	3e-30
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	7e-30
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	2e-29
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	5e-28
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	7e-27
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	4e-26
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	1e-25
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	1e-25
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	2e-25
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	2e-24
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	1e-22
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	2e-22
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	2e-22
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	2e-20
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	1e-18
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	1e-18
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	1e-17
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	4e-17
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	4e-17
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	3e-15
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	3e-15
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	5e-15
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	1e-14
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	1e-14
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	1e-14
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	2e-14
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	3e-14
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	4e-14
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	1e-13
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	1e-13
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	4e-13
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	5e-13
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	6e-13
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	2e-12
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	4e-12
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	1e-10
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	1e-10
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	2e-10
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	1e-09
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	1e-08
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	6e-08
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	2e-07
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	3e-07
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	4e-06
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	4e-05

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score =  360 bits (927), Expect = e-123
 Identities = 168/341 (49%), Positives = 219/341 (64%), Gaps = 9/341 (2%)

Query: 62  LDTSARGFSYLANK---LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADIN 118
           L T    F  +  +   LVY  HG P +VV ++N  L +V+  +V VKML AP+NP+DIN
Sbjct: 13  LGTENLYFQSMPARVRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDIN 72

Query: 119 TIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDV 178
            IQG Y + P LPAV G EGV +VV VGS+V+ L  GD VIP    LGTWR    F+ + 
Sbjct: 73  MIQGNYGLLPELPAVGGNEGVAQVVAVGSNVTGLKPGDWVIPANAGLGTWRTEAVFSEEA 132

Query: 179 LMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWG 238
           L++VP DI L   + +  NPCTAYRML D+  L PGD VIQN +NS  GQ VIQIA   G
Sbjct: 133 LIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALG 192

Query: 239 LKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASI---PKPKLALNCVGGNS 295
           L+TIN+VR+R DI KL   LKSLGA++V TEEELR           P+P+LALNCVGG S
Sbjct: 193 LRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMPQPRLALNCVGGKS 252

Query: 296 ATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSM 355
           +T LLR L   G MVTYGGM+++PV    S  IFKD+ LRG W+++W+K++    + K +
Sbjct: 253 STELLRQLARGGTMVTYGGMAKQPVVASVSLLIFKDLKLRGFWLSQWKKDHS-PDQFKEL 311

Query: 356 MNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMS--IQGK 394
           +  L +++R G+L APA   V L+++Q AL  +M   I  K
Sbjct: 312 ILTLCDLIRRGQLTAPACSQVPLQDYQSALEASMKPFISSK 352

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score =  337 bits (865), Expect = e-114
 Identities = 134/360 (37%), Positives = 193/360 (53%), Gaps = 38/360 (10%)

Query: 76  LVYNQHGTPLRVVTVENETLN--SVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTL--- 130
           ++Y QHG P  V+  ++  ++  ++  +EV+VK L +PVNP+DIN IQGVYP KP     
Sbjct: 7   VLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTG 66

Query: 131 ------PAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKV-- 182
                  A  G EG+ EV++VGS+VSSL  GD VIP   + GTWR +   N D  +K+  
Sbjct: 67  FGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIKLPN 126

Query: 183 ---------PKDIALTEISGITSNPCTAYRMLKDYNSLSPG-DVVIQNGANSACGQNVIQ 232
                    P  + + + + I+ NP TAY ML  Y  L+PG D  IQNG  SA G+   Q
Sbjct: 127 PAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQ 186

Query: 233 IARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASI--------PKP 284
           I +     +I+++R+R ++D++ + LK LGA  V TE++  +     +I         + 
Sbjct: 187 IGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEA 246

Query: 285 KLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQK 344
           KLALNCVGG S+T + R L + G+M+TYGGMS +PV IPTS +IFK+ T  G W+T   K
Sbjct: 247 KLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLK 306

Query: 345 ENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEAL-----MNTMSIQGKSGVKY 399
            NKE   + S +N++      GKL             +            S  GK  + Y
Sbjct: 307 NNKE--LKTSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLITY 364

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score =  242 bits (621), Expect = 9e-78
 Identities = 83/326 (25%), Positives = 142/326 (43%), Gaps = 14/326 (4%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
           + +++ G P  V+ VE + +  ++ +EV V+MLV P+NP+D+  I G Y  +  LP +PG
Sbjct: 8   IQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPG 67

Query: 136 FEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGIT 195
           +EGVG V  VG+ VS   +G  V+P     GTW+ Y K + D ++ +P  I     + + 
Sbjct: 68  YEGVGIVENVGAFVSRELIGKRVLPLRGE-GTWQEYVKTSADFVVPIPDSIDDFTAAQMY 126

Query: 196 SNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK 255
            NP TA+    +  +L   DV++ N   SA G    Q+++    + I + RN    +   
Sbjct: 127 INPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTE--- 183

Query: 256 SYLKSLGADYVF--TEEELRNISRDASIPK-PKLALNCVGGNSATNLLRTLVSKGVMVTY 312
             L  LGA YV   +   L     + +       A++ +GG     L  +L   G  +T 
Sbjct: 184 -ELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIGGPDGNELAFSLRPNGHFLTI 242

Query: 313 GGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPA 372
           G +S   V           +      +  W  E     + +     L  ++   +L    
Sbjct: 243 GLLSGIQVN-WAEIVTKAKVHANIFHLRHWNDEVSP-YKWQETFRHLIRLVENEQLRFMK 300

Query: 373 -HKFVTLKNFQEA---LMNTMSIQGK 394
            H    L + + A   + +    +GK
Sbjct: 301 VHSTYELADVKAAVDVVQSAEKTKGK 326

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score =  239 bits (613), Expect = 2e-76
 Identities = 66/328 (20%), Positives = 120/328 (36%), Gaps = 25/328 (7%)

Query: 76  LVYNQHGTPLRVVTVENETLNSV-----------QKHEVVVKMLVAPVNPADINTIQGVY 124
           L+    G          E +                 +V++K+ +A +NP+D+  I+G Y
Sbjct: 14  LLLVGDGYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQY 73

Query: 125 PIKPTLPAVPGFEGVGEVVEVGSDVSS-LAVGDHVIPDTQHL--GTWRNYGKFNHDVLMK 181
                     GFEGVG +V  G +  +   VG  V   T     G+W  Y        + 
Sbjct: 74  GQPRVKGRPAGFEGVGTIVAGGDEPYAKSLVGKRVAFATGLSNWGSWAEYAVAEAAACIP 133

Query: 182 VPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKT 241
           +   +   + + +  NP TA  M             +     S   + +I +A+  G + 
Sbjct: 134 LLDTVRDEDGAAMIVNPLTAIAMFDIVK-QEGEKAFVMTAGASQLCKLIIGLAKEEGFRP 192

Query: 242 INIVRNRDDIDKLKSYLKSLGADYVF--TEEELRNISRDASIPK-PKLALNCVGGNSATN 298
           I  VR  + I      LK +GA +V      +     R+    + P++ L+ V G  A+ 
Sbjct: 193 IVTVRRDEQIA----LLKDIGAAHVLNEKAPDFEATLREVMKAEQPRIFLDAVTGPLASA 248

Query: 299 LLRTLVSKGVMVTYGGMSREPVQI-PTSAFIFKDITLRGHWMTRWQKENKESAERKSMMN 357
           +   +  +   + YG +  +   I      IF+   + G W++ W ++ KE   R   + 
Sbjct: 249 IFNAMPKRARWIIYGRLDPDATVIREPGQLIFQHKHIEGFWLSEWMRQFKE--RRGPAIL 306

Query: 358 ELTEMMRTGKLAAPAHKFVTLKNFQEAL 385
           E  +    G+ +      V L      +
Sbjct: 307 EAQKRFSDGRWSTDVTAVVPLAEAIAWV 334

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score =  158 bits (402), Expect = 5e-45
 Identities = 61/355 (17%), Positives = 121/355 (34%), Gaps = 59/355 (16%)

Query: 78  YNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPI----------- 126
             +    L  +++++         EV++++  +P+NP+D+  + G   +           
Sbjct: 11  RIKSSGEL-ELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAER 69

Query: 127 -----------------KPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWR 169
                            +       G EG G VVE GS  ++ A+    +        + 
Sbjct: 70  PIVTARVPEGAMRSMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVA-AIGGAMYS 128

Query: 170 NYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQN 229
            Y     D  + +P+     + +    NP TA  M++    L     ++   A S  GQ 
Sbjct: 129 QYRCIPADQCLVLPEGATPADGASSFVNPLTALGMVETMR-LEGHSALVHTAAASNLGQM 187

Query: 230 VIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV--FTEEELRNISRDASIPK-PKL 286
           + QI    G+K +NIVR ++  D     LK+ GA +V             +A +     +
Sbjct: 188 LNQICLKDGIKLVNIVRKQEQADL----LKAQGAVHVCNAASPTFMQDLTEALVSTGATI 243

Query: 287 ALNCVGGNSATNLLRTLVSKGV-----------------MVTYGGMSREPVQIPTSAFIF 329
           A +  GG      + T +   +                 +  YGG+   P +   +    
Sbjct: 244 AFDATGGGKLGGQILTCMEAALNKSAREYSRYGSTTHKQVYLYGGLDTSPTEFNRN--FG 301

Query: 330 KDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEA 384
               + G  +  + +  K   ER + + +          A+   K ++L    + 
Sbjct: 302 MAWGMGGWLLFPFLQ--KIGRERANALKQRVVAELKTTFASHYSKEISLAEVLDL 354

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score =  138 bits (350), Expect = 1e-37
 Identities = 67/295 (22%), Positives = 116/295 (39%), Gaps = 16/295 (5%)

Query: 99  QKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHV 158
           + H+V++K+    VNP +     G Y  KP LP  PG +  G +  VG + S+   GD V
Sbjct: 56  KDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASAFKKGDRV 115

Query: 159 IPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVI 218
              +   G +  Y       + K+P+ +   + + I     TAYR L     +  G+ V+
Sbjct: 116 FTSSTISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVL 175

Query: 219 QNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEEELRNIS 276
            +GA+   G    QIAR +GLK +         +  K  +   GA  VF   E    +  
Sbjct: 176 VHGASGGVGLAACQIARAYGLKILGTAGTE---EGQK-IVLQNGAHEVFNHREVNYIDKI 231

Query: 277 RDASIPK-PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLR 335
           +     K   + +  +   + +  L  L   G ++  G      ++I     + K+ ++ 
Sbjct: 232 KKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGSRG--TIEINPRDTMAKESSII 289

Query: 336 G-HWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTM 389
           G    +  ++E ++ A        L   M  G L         L+   EA  N +
Sbjct: 290 GVTLFSSTKEEFQQYAA------ALQAGMEIGWLKPVIGSQYPLEKVAEAHENII 338

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score =  136 bits (345), Expect = 6e-37
 Identities = 60/328 (18%), Positives = 115/328 (35%), Gaps = 26/328 (7%)

Query: 76  LVYNQHGTP--LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAV 133
           +V    G    LR+           Q  E+ +++    +N  D+   QG     P  P V
Sbjct: 7   VVLAGFGGLNKLRLFRKAMPEP---QDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLV 63

Query: 134 PGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISG 193
           PGFE  G V  +G  V    +GD V+    +   W        + + K+P D++ +E + 
Sbjct: 64  PGFECSGIVEALGDSVKGYEIGDRVMAFVNY-NAWAEVVCTPVEFVYKIPDDMSFSEAAA 122

Query: 194 ITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDK 253
              N  TAY ML +  +L  G  V+ + A    GQ V Q+       T+    +    + 
Sbjct: 123 FPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTASTFKHE- 181

Query: 254 LKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYG 313
               +K           +     +  S     + L+C+ G++    L  L   G  + YG
Sbjct: 182 ---AIKDSVTHLFDRNADYVQEVKRISAEGVDIVLDCLCGDNTGKGLSLLKPLGTYILYG 238

Query: 314 GMS----------------REPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMN 357
             +                 +  ++       ++  + G  +     +   +   + ++ 
Sbjct: 239 SSNMVTGETKSFFSFAKSWWQVEKVNPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVE 298

Query: 358 ELTEMMRTGKLAAPAHKFVTLKNFQEAL 385
           +L  +    K+         L+  +EA+
Sbjct: 299 KLIGLYNQKKIKPVVDSLWALEEVKEAM 326

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score =  135 bits (341), Expect = 2e-36
 Identities = 71/314 (22%), Positives = 122/314 (38%), Gaps = 16/314 (5%)

Query: 76  LVYNQHGTP--LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAV 133
           +       P  L    VE         + VVV +  A V   D    +G Y +K   P V
Sbjct: 25  IQAQSLSGPEGLVYTDVETPGA---GPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFV 81

Query: 134 PGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISG 193
           PG E  G V     + S +  GD V+      G +          ++  P  +   E   
Sbjct: 82  PGIETAGVVRSAP-EGSGIKPGDRVMAFNFI-GGYAERVAVAPSNILPTPPQLDDAEAVA 139

Query: 194 ITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDK 253
           + +N  T Y        L  G+ V+  GA    G   IQIA+  G K I +V        
Sbjct: 140 LIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRT---AA 196

Query: 254 LKSYLKSLGADYVF-TEEELRNISRDASIPK-PKLALNCVGGNSATNLLRTLVSKGVMVT 311
            + ++KS+GAD V   EE      R+A+      + ++ +GG +  + +RTL S+G ++ 
Sbjct: 197 TE-FVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGGPAFDDAVRTLASEGRLLV 255

Query: 312 YGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAP 371
            G  +     I  +  + ++ +L G     + + + +          L +++  G +  P
Sbjct: 256 VGFAAGGIPTIKVNRLLLRNASLIGVAWGEFLRTHADYLYE--TQAGLEKLVAEG-MRPP 312

Query: 372 AHKFVTLKNFQEAL 385
               + L   ++AL
Sbjct: 313 VSARIPLSEGRQAL 326

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score =  132 bits (334), Expect = 2e-35
 Identities = 76/342 (22%), Positives = 126/342 (36%), Gaps = 51/342 (14%)

Query: 76  LVYNQHGTP--LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAV 133
           +V    G P  L V  +           EV V++  A +N  D+   +GV   K  LP V
Sbjct: 4   VVMRARGGPEVLEVADLPVPE---PGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHV 60

Query: 134 PGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHL--------------------------GT 167
            G +G G V  VG  V   A GD V+ +                              GT
Sbjct: 61  LGADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHGT 120

Query: 168 WRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACG 227
           +  Y       L   PK+++  E + I     TA++M+ D   + PGD V+   A S   
Sbjct: 121 YAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVS 180

Query: 228 QNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEEELRNISRDASIPK-P 284
              IQIA+ +G + I    +    DKL+   K+LGAD     T  +     R  +  K  
Sbjct: 181 VAAIQIAKLFGARVIATAGSE---DKLR-RAKALGADETVNYTHPDWPKEVRRLTGGKGA 236

Query: 285 KLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWM-TRWQ 343
              ++  G      +++   + G +   G  S     +P +   ++ +++ G  M ++  
Sbjct: 237 DKVVDHTGALYFEGVIKATANGGRIAIAGASSGYEGTLPFAHVFYRQLSILGSTMASK-- 294

Query: 344 KENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEAL 385
                     S +  +   +  GKL     + + L+   E  
Sbjct: 295 ----------SRLFPILRFVEEGKLKPVVGQVLPLEAAAEGH 326

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score =  132 bits (335), Expect = 2e-35
 Identities = 63/328 (19%), Positives = 102/328 (31%), Gaps = 47/328 (14%)

Query: 85  LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVE 144
           L++            +H+++V+ L   +N  D   ++    +    P VP  +  G V  
Sbjct: 41  LKLAERPVPEA---GEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEA 97

Query: 145 VGSDVSSLAVGDHVI--PDTQHL---------------------GTWRNYGKFNHDVLMK 181
           VG  V+    GD VI       L                     G    Y        + 
Sbjct: 98  VGKSVTRFRPGDRVISTFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVA 157

Query: 182 VPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKT 241
            PK +   E S +     TA+  L +   L  GD V+  G         +QIA+  G + 
Sbjct: 158 APKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGT-GGVALFGLQIAKATGAEV 216

Query: 242 INIVRNRDDIDKLKSYLKSLGADYVF--TEEELRNISRDASIPK-PKLALNCVGGNSATN 298
           I    +R   +KL     +LGAD+     EE+        +  +     L   GG     
Sbjct: 217 IVTSSSR---EKLD-RAFALGADHGINRLEEDWVERVYALTGDRGADHILEIAGGAGLGQ 272

Query: 299 LLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRG-HWMTRWQKENKESAERKSMMN 357
            L+ +   G +   G +    V  P    + K   ++G     R              + 
Sbjct: 273 SLKAVAPDGRISVIGVLEGFEVSGPVGPLLLKSPVVQGISVGHR------------RALE 320

Query: 358 ELTEMMRTGKLAAPAHKFVTLKNFQEAL 385
           +L   +    L              EAL
Sbjct: 321 DLVGAVDRLGLKPVIDMRYKFTEVPEAL 348

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score =  131 bits (333), Expect = 2e-35
 Identities = 65/353 (18%), Positives = 117/353 (33%), Gaps = 70/353 (19%)

Query: 77  VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVY-------PIKPT 129
              + G PL +  +        +  +V++K+  A V  +D++  QG +        +   
Sbjct: 5   RLVEIGKPLSLQEIGVPKP---KGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61

Query: 130 LPAVPGFEGVGEVVEVGSDVSSLAVGDHVI---------------------PDTQHLGTW 168
           LP   G E  G++ EVG +V   + GD V                         + LG  
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGIN 121

Query: 169 RN-----YGKFNHDVLMKVPKDIALTEISGITSNPC---TAYRMLKDYNSLSPGDVVIQN 220
            +     Y    H   M   + +   E + +T   C   T YR ++  + L P   ++  
Sbjct: 122 FDGAYAEYVIVPHYKYMYKLRRLNAVEAAPLT---CSGITTYRAVRKAS-LDPTKTLLVV 177

Query: 221 GANSACGQNVIQIARH-WGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEEELRNIS 276
           GA    G   +QIA+   G   I +       + ++   K  GADYV     ++ L  I 
Sbjct: 178 GAGGGLGTMAVQIAKAVSGATIIGVDVRE---EAVE-AAKRAGADYVINASMQDPLAEIR 233

Query: 277 RDASIPKPKLALNCVGGNSATNLLRTLVSKG---VMVTYGGMSREPVQIPTSAFIFKDIT 333
           R          ++        ++    ++K    VMV   G+    +          +I 
Sbjct: 234 RITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMV---GLFGADLHYHAPLITLSEIQ 290

Query: 334 LRG-HWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEAL 385
             G     +                 +  +   GK+     K + L+   EA+
Sbjct: 291 FVGSLVGNQSD------------FLGIMRLAEAGKVKPMITKTMKLEEANEAI 331

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score =  132 bits (334), Expect = 3e-35
 Identities = 71/308 (23%), Positives = 119/308 (38%), Gaps = 40/308 (12%)

Query: 102 EVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSS-LAVGDHVIP 160
           +++V+     VN +DIN   G Y      P   GFEG+GEVV +G   S+   VG  V  
Sbjct: 55  DLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALGLSASARYTVGQAVA- 113

Query: 161 DTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQN 220
                G++  Y      +   VP      E   +  +  TAY  LK+   LS G  V+  
Sbjct: 114 -YMAPGSFAEYTVVPASIATPVPS--VKPEYLTLLVSGTTAYISLKELGGLSEGKKVLVT 170

Query: 221 GANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEEELRNISRD 278
            A    GQ  +Q+++      I    +    +K   +LKSLG D       E +  + + 
Sbjct: 171 AAAGGTGQFAMQLSKKAKCHVIGTCSSD---EKSA-FLKSLGCDRPINYKTEPVGTVLKQ 226

Query: 279 ASIPKPK---LALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAF-------- 327
                P+   +    VGG      +  L +KG ++  G +S        S          
Sbjct: 227 EY---PEGVDVVYESVGGAMFDLAVDALATKGRLIVIGFISGYQTPTGLSPVKAGTLPAK 283

Query: 328 -IFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL--------AAPAHKFVTL 378
            + K  +++G ++  +  + +        M+ L EM  +G L         +P  +F  L
Sbjct: 284 LLKKSASVQGFFLNHYLSKYQA------AMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGL 337

Query: 379 KNFQEALM 386
           ++   A+ 
Sbjct: 338 ESIFRAVN 345

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score =  131 bits (332), Expect = 6e-35
 Identities = 69/360 (19%), Positives = 121/360 (33%), Gaps = 54/360 (15%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
           L  N H             L    + +V V++    +NP+D +          T  A  G
Sbjct: 15  LTVNDHDEVTVWNAAPCPMLP---RDQVYVRVEAVAINPSDTSMRGQF----ATPWAFLG 67

Query: 136 FEGVGEVVEVGSDVSSLAVGDHVI-------PDTQHLGTWRNYGKFNHDVLMKVPKDIAL 188
            +  G VV VGSDV+ + VGD V        P T   G +  Y      V  K+PK ++ 
Sbjct: 68  TDYAGTVVAVGSDVTHIQVGDRVYGAQNEMCPRTPDQGAFSQYTVTRGRVWAKIPKGLSF 127

Query: 189 TEISGITSNPCTAYRMLKDYNSLSP------------GDVVIQNGANSACGQNVIQIARH 236
            + + + +   TA   +K      P               V+  G ++A     +Q+ R 
Sbjct: 128 EQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRL 187

Query: 237 WGLKTINIV--RNRDDIDKLKSYLKSLGADYVF--TEEELRNISRDASIPKPKLALNCVG 292
            G   I      N D         KS GA+ VF      L    R  +    + AL+C+ 
Sbjct: 188 SGYIPIATCSPHNFD-------LAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCIT 240

Query: 293 GNSATNLLRTLVSK--GVMVTYGGMSREPVQIPTSAFIF--------KDITLRGHWMTRW 342
              +T      + +  G  V+                 +        +  T    +    
Sbjct: 241 NVESTTFCFAAIGRAGGHYVSLNPFPEHAATRKMVTTDWTLGPTIFGEGSTWPAPYGRPG 300

Query: 343 QKENKESAERKSMMNELTEMMRTGKLAAPAHKFV--TLKNFQEALMNTMSIQGK-SGVKY 399
            +E ++  E   +     +++  G+L     + V     + ++ +   +  +G+ SG K 
Sbjct: 301 SEEERQFGED--LWRIAGQLVEDGRLVHHPLRVVQGGFDHIKQGM--ELVRKGELSGEKL 356

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score =  128 bits (325), Expect = 3e-34
 Identities = 72/322 (22%), Positives = 128/322 (39%), Gaps = 33/322 (10%)

Query: 77  VYNQHGTP--LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVP 134
            ++  G P  L  V  E     +     VVV+     +N  D     G+YP  P LP+  
Sbjct: 6   QFSTVGGPEVLEYVDFE---PEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPA-PFLPSGL 61

Query: 135 GFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGI 194
           G EG G V  VG +V+   VGD V   T  LG +          L+K+   ++  + + +
Sbjct: 62  GAEGAGVVEAVGDEVTRFKVGDRVAYGTGPLGAYSEVHVLPEANLVKLADSVSFEQAAAL 121

Query: 195 TSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKL 254
                T   +L+    + PG++++ + A    G    Q A+  G K I  V +    +K 
Sbjct: 122 MLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSP---EKA 178

Query: 255 KSYLKSLGADYVFT------EEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGV 308
             + K+LGA            + +  ++     P   +  + VG ++    L ++  +G+
Sbjct: 179 A-HAKALGAWETIDYSHEDVAKRVLELTDGKKCP---VVYDGVGQDTWLTSLDSVAPRGL 234

Query: 309 MVTYGGMSREPVQIPTSAFIFKDI------TLRGHWMTRWQKENKESAERKSMMNELTEM 362
           +V++G  S     +       KD       TL  +               ++M +EL +M
Sbjct: 235 VVSFGNASGPVSGVNLGILAQKDSVYVTRPTLGSYANNA--------QNLQTMADELFDM 286

Query: 363 MRTGKLAAPAHKFVTLKNFQEA 384
           + +GKL     +   LK+  +A
Sbjct: 287 LASGKLKVDGIEQYALKDAAKA 308

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score =  126 bits (318), Expect = 2e-33
 Identities = 71/334 (21%), Positives = 135/334 (40%), Gaps = 43/334 (12%)

Query: 76  LVYNQHGTP--LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVY----PIKPT 129
           + ++Q G P  L++V          +K+++++K+  A +NP D  T  G       +K  
Sbjct: 10  IQFDQFGPPKVLKLVDTPTPE---YRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNN 66

Query: 130 LPAVPGFEGVGEVVEVGSDVSSLAVGDHV---IPDTQHLGTWRNYGKFNHDVLMKVPKDI 186
           LP+  G++  GEV+E+GSDV+++ +GD V        H   +  Y   + D +++  + +
Sbjct: 67  LPSGLGYDFSGEVIELGSDVNNVNIGDKVMGIAGFPDHPCCYAEYVCASPDTIIQKLEKL 126

Query: 187 ALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIV- 245
           +  + + + +   TA + L +   +  GDVV+ +      G   IQ+A+  G   I    
Sbjct: 127 SFLQAASLPTAGLTALQAL-NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTAS 185

Query: 246 -RNRDDIDKLKSYLKSLGADYV--FTEEELRNISRDASIPKPKLALNCVGGNSATNLLRT 302
            RN         +LK+LGA+    + EE+                ++ VGG+     +  
Sbjct: 186 KRNHA-------FLKALGAEQCINYHEEDFLLAIST----PVDAVIDLVGGDVGIQSIDC 234

Query: 303 LVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEM 362
           L   G +V+   +              K     G            + E    ++ L ++
Sbjct: 235 LKETGCIVSVPTI---TAGRVIEVAKQKHRRAFGLLKQF-------NIEE---LHYLGKL 281

Query: 363 MRTGKLAAPAHKFVTLKNFQEA--LMNTMSIQGK 394
           +   KL     +   L     A  L+ T  ++GK
Sbjct: 282 VSEDKLRIEISRIFQLSEAVTAHELLETGHVRGK 315

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score =  125 bits (317), Expect = 4e-33
 Identities = 72/326 (22%), Positives = 121/326 (37%), Gaps = 47/326 (14%)

Query: 77  VYNQHGTP--LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVP 134
            +++HG P  L+ V           ++E+ V+     +N  D     G+YP  P+LP+  
Sbjct: 6   EFHKHGGPEVLQAVEFT---PADPAENEIQVENKAIGINFIDTYIRSGLYPP-PSLPSGL 61

Query: 135 GFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGI 194
           G E  G V +VGS V  +  GD V+     LG + +      D    +P  I+  + +  
Sbjct: 62  GTEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNIIADKAAILPAAISFEQAAAS 121

Query: 195 TSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKL 254
                T Y +L+    + P +  + + A    G    Q A+  G K I  V       K 
Sbjct: 122 FLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTA---QKA 178

Query: 255 KSYLKSLGADYVFT------EEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGV 308
           +      GA  V         E L+ I+    +    +  + VG ++    L  L  +G+
Sbjct: 179 Q-SALKAGAWQVINYREEDLVERLKEITGGKKVR---VVYDSVGRDTWERSLDCLQRRGL 234

Query: 309 MVTYGGMSREPVQIPTSAFIFKDI------TLRGHWMTRWQKENKESAERKSMMNELTEM 362
           MV++G  S     +       K        +L+G+  TR         E     NEL  +
Sbjct: 235 MVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYITTR--------EELTEASNELFSL 286

Query: 363 MRTGKL--------------AAPAHK 374
           + +G +              A  AH+
Sbjct: 287 IASGVIKVDVAEQQKYPLKDAQRAHE 312

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score =  123 bits (311), Expect = 3e-32
 Identities = 71/338 (21%), Positives = 118/338 (34%), Gaps = 37/338 (10%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYP-IKPTLPAVP 134
            V  +   P  +  +           +V+V++  +  NP D     G  P  +  LPA+ 
Sbjct: 11  AVVEEANGPFVLRKLARPQ---PAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAIL 67

Query: 135 GFEGVGEVVEVGSDVSSLAVGDHVI----PDTQHLGTWRNYGKFNHDVLMKVPKDIALTE 190
           G +  G VV VG +V S  VGD V           GT   +   +  +L   P  + + +
Sbjct: 68  GMDLAGTVVAVGPEVDSFRVGDAVFGLTGGVGGLQGTHAQFAAVDARLLASKPAALTMRQ 127

Query: 191 ISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD 250
            S +     TA+  L D   +  G  V+  G     G   IQIA   G +     R  D 
Sbjct: 128 ASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFATARGSD- 186

Query: 251 IDKLKSYLKSLGADYVFTEEELRNISRDASIPKP-KLALNCVGGNSATNLLRTLVSKGVM 309
                 Y++ LGA  +    E  + + + +  +   L  + +GG         +   G +
Sbjct: 187 ----LEYVRDLGATPIDASREPEDYAAEHTAGQGFDLVYDTLGGPVLDASFSAVKRFGHV 242

Query: 310 VTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL- 368
           V+  G     +    +   FK  T  G +       N+  A    M+ E   +++TGKL 
Sbjct: 243 VSCLGWGTHKL----APLSFKQATYSGVFTLHTLLANEGLAHFGEMLREADALVQTGKLA 298

Query: 369 ------------AAPAHKFVTLKNFQEALMNTMSIQGK 394
                          A+  V          +    +GK
Sbjct: 299 PRLDPRTFSIAEIGSAYDAV------LGRNDVPRQRGK 330

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score =  122 bits (308), Expect = 7e-32
 Identities = 70/320 (21%), Positives = 128/320 (40%), Gaps = 29/320 (9%)

Query: 77  VYNQHGTP--LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVP 134
           + ++ G    ++        + S+ + E+++K     VN  +    +G+YP +   P V 
Sbjct: 13  LIDEIGGYDVIKYEDYP---VPSISEEELLIKNKYTGVNYIESYFRKGIYPCE--KPYVL 67

Query: 135 GFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGK-FNHDVLMKVPKDIALTEISG 193
           G E  G VV  G  V++  VGD V        T+  Y K  +   +MK+PK  +  E+  
Sbjct: 68  GREASGTVVAKGKGVTNFEVGDQVA--YISNSTFAQYSKISSQGPVMKLPKGTSDEELKL 125

Query: 194 ITSNP---CTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD 250
             +      TA     +   +  GD V+   A    G  + Q+ +  G  TI +      
Sbjct: 126 YAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTD-- 183

Query: 251 IDKLKSYLKSLGADYVFT------EEELRNISRDASIPKPKLALNCVGGNSATNLLRTLV 304
            +KLK   K  GA+Y+          ++   +    +     + + VG ++    L  L 
Sbjct: 184 -EKLK-IAKEYGAEYLINASKEDILRQVLKFTNGKGVD---ASFDSVGKDTFEISLAALK 238

Query: 305 SKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMR 364
            KGV V++G  S        +    K+ITL    +  +     +  E K   +E   ++ 
Sbjct: 239 RKGVFVSFGNASGLIPPFSITRLSPKNITLVRPQLYGY---IADPEEWKYYSDEFFGLVN 295

Query: 365 TGKLAAPAHKFVTLKNFQEA 384
           + KL    +K   L++++ A
Sbjct: 296 SKKLNIKIYKTYPLRDYRTA 315

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score =  121 bits (306), Expect = 2e-31
 Identities = 68/323 (21%), Positives = 121/323 (37%), Gaps = 29/323 (8%)

Query: 77  VYNQHGTP--LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKP--TLPA 132
           V ++ G P       V+   + S    +V ++     VN  D     G+         P 
Sbjct: 6   VIHKKGGPDNFVWEEVK---VGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPI 62

Query: 133 VPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEIS 192
           V GFE    V EVG  V+   VG+ V      LG +     +  + L+KVPKD+ L +  
Sbjct: 63  VVGFEAAAVVEEVGPGVTDFTVGERVCTCLPPLGAYSQERLYPAEKLIKVPKDLDL-DDV 121

Query: 193 GITSNP---CTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD 249
            +        TA  +L   + + PGD V+ + A    G  ++  ARH G   I  V    
Sbjct: 122 HLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTE- 180

Query: 250 DIDKLKSYLKSLGADYVFT------EEELRNISRDASIPKPKLALNCVGGNSATNLLRTL 303
             +K +   + LG  +          E +R I+    +    +  + +G ++    L  L
Sbjct: 181 --EKAE-TARKLGCHHTINYSTQDFAEVVREITGGKGVD---VVYDSIGKDTLQKSLDCL 234

Query: 304 VSKGVMVTYGGMS--REPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTE 361
             +G+   YG  S   +P+++     +   + +    +  +       +E       L +
Sbjct: 235 RPRGMCAAYGHASGVADPIRVVEDLGVRGSLFITRPALWHY---MSNRSEIDEGSKCLFD 291

Query: 362 MMRTGKLAAPAHKFVTLKNFQEA 384
            ++ G L +   K   L+    A
Sbjct: 292 AVKAGVLHSSVAKTFPLREAAAA 314

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score =  122 bits (308), Expect = 4e-31
 Identities = 62/392 (15%), Positives = 124/392 (31%), Gaps = 84/392 (21%)

Query: 75  KLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVY---------- 124
             +  +   P + + +++  +  +   E +V ++ + VN   ++T               
Sbjct: 45  AGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERY 104

Query: 125 ------PIKPTLP-AVPGFEGVGEVVEVGSDVSSLAVGDHVI------------------ 159
                   +  LP  V G +  G V+  G  V++   GD V+                  
Sbjct: 105 GRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESSDGHNDTM 164

Query: 160 --PDTQHLGTWRNYG------KFNHDVLMKVPKDIALTEISGITSNPCTAYRML--KDYN 209
             P+ +  G   N+G          + LM  P  ++  E +       TAYR L  ++  
Sbjct: 165 LDPEQRIWGFETNFGGLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGA 224

Query: 210 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-- 267
            +  GD V+  GA+   G    Q A   G   I +V +     K +   +++GA+ +   
Sbjct: 225 GMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSP---QKAE-ICRAMGAEAIIDR 280

Query: 268 TEEELRNISRDASIPKPK------------------LALNCVGGNSATNLLRTLVSKGVM 309
             E  R    + +    +                  +     G  +    +      G +
Sbjct: 281 NAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRETFGASVFVTRKGGTI 340

Query: 310 VTYGGMSREPVQIPTSAFIFKDITLRG-HWMTRWQKENKESAERKSMMNELTEMMRTGKL 368
            T    S    +            + G H+    +              E   ++  G++
Sbjct: 341 TTCASTSGYMHEYDNRYLWMSLKRIIGSHFANYRE------------AWEANRLIAKGRI 388

Query: 369 AAPAHKFVTLKNFQEAL--MNTMSIQGKSGVK 398
                K  +L++  +A   ++    QGK GV 
Sbjct: 389 HPTLSKVYSLEDTGQAAYDVHRNLHQGKVGVL 420

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score =  118 bits (298), Expect = 2e-30
 Identities = 61/347 (17%), Positives = 118/347 (34%), Gaps = 64/347 (18%)

Query: 77  VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVY-PIKPTLPAVPG 135
           +  +   PL +  V           EV++++  A V   D+   +GV       LP + G
Sbjct: 8   LLKKFSEPLSIEDVNIPEPQG---EEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILG 64

Query: 136 FEGVGEVVEVGSDVSSLAVGDHVI---------------------PDTQHLGTWRN---- 170
            E  G +VEVG +++ +  GD+V+                      +    G   N    
Sbjct: 65  HENAGTIVEVG-ELAKVKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIPGQTTNGGFS 123

Query: 171 -YGKFNHDVLMKVPKDIALTEISGITSNPC---TAYRMLK---DYNSLSPGDVVIQNGAN 223
            Y        +     ++  E + +        T+   ++    + S     VVI NG  
Sbjct: 124 EYMLVKSSRWLVKLNSLSPVEAAPLA---DAGTTSMGAIRQALPFISKFAEPVVIVNGIG 180

Query: 224 SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIP 282
                  IQI +        +  +R        +   LGADYV   ++    I++     
Sbjct: 181 -GLAVYTIQILKALMKNITIVGISRSK-KHRD-FALELGADYVSEMKDAESLINKLTDGL 237

Query: 283 KPKLALNCVGGNSATNLLRTLVSKG---VMVTYGGMSREPVQIPTSAFIFKDITLRG-HW 338
              +A++ VG    T  L  L+++    ++V   GM  + V +        +  L G ++
Sbjct: 238 GASIAIDLVGTEETTYNLGKLLAQEGAIILV---GMEGKRVSLEAFDTAVWNKKLLGSNY 294

Query: 339 MTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEAL 385
            +               + ++  +  +GK+     K   L +  +A 
Sbjct: 295 GSLND------------LEDVVRLSESGKIKPYIIKV-PLDDINKAF 328

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score =  120 bits (302), Expect = 3e-30
 Identities = 60/368 (16%), Positives = 103/368 (27%), Gaps = 82/368 (22%)

Query: 84  PLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVY-----------------PI 126
             + + +    +  +   EV+V ++ + +N   + +                        
Sbjct: 46  VRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQGGWATR 105

Query: 127 KPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHL--------------------- 165
                 V G +  G VV  G  V     GDHVI    H+                     
Sbjct: 106 HDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEPATHGDGMLGTEQRAWG 165

Query: 166 -----GTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRML--KDYNSLSPGDVVI 218
                G    YG      L+  P  +   E +       TAYRML       +  GD+V+
Sbjct: 166 FETNFGGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVL 225

Query: 219 QNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF----------- 267
             GA+   G   IQ  ++ G   + +V +     K    +++LG D V            
Sbjct: 226 IWGASGGLGSYAIQFVKNGGGIPVAVVSSA---QKEA-AVRALGCDLVINRAELGITDDI 281

Query: 268 ---------TEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSRE 318
                    T  +L  +  + +  +P +     G  +    +      G +VT G  S  
Sbjct: 282 ADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVTFGLSVIVARRGGTVVTCGSSSGY 341

Query: 319 PVQIPTSAFIFKDITLRG-HWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVT 377
                      K   + G H     +                  +  +G +         
Sbjct: 342 LHTFDNRYLWMKLKKIVGSHGANHEE------------QQATNRLFESGAVVPAMSAVYP 389

Query: 378 LKNFQEAL 385
           L    EA 
Sbjct: 390 LAEAAEAC 397

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score =  117 bits (296), Expect = 3e-30
 Identities = 53/320 (16%), Positives = 120/320 (37%), Gaps = 37/320 (11%)

Query: 77  VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGF 136
               + T    VT+ +  + ++   +++V+     +NP D   I+   PI  +   VPG 
Sbjct: 6   QVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKA-NPINWSNGHVPGV 64

Query: 137 EGVGEVVEVGSDVSSLAVGDHVI--PDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGI 194
           +G G +V+VG+ V S  +G  V      +  G++  +   N D +M +P +++    + +
Sbjct: 65  DGAGVIVKVGAKVDSKMLGRRVAYHTSLKRHGSFAEFTVLNTDRVMTLPDNLSFERAAAL 124

Query: 195 TSNPC---TAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDI 251
              PC   TA++   +   L+    V+  G  +     + Q+  + G     +  +    
Sbjct: 125 ---PCPLLTAWQAF-EKIPLTKQREVLIVGFGAV-NNLLTQMLNNAGYVVDLVSASLS-- 177

Query: 252 DKLKSYLKSLGADYVF--TEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVM 309
              ++     G  +++    +  +     A         + V   +A  L+ +L + G +
Sbjct: 178 ---QALAAKRGVRHLYREPSQVTQKY--FA-------IFDAVNSQNAAALVPSLKANGHI 225

Query: 310 VTYGGMSREPVQIPTSAFIFKDITLRGHWM-TRWQKENKESAERKSM---MNELTEMMRT 365
           +         +  P      + I+   H +      +  +  + + +      L  ++  
Sbjct: 226 ICIQD----RIPAPIDPAFTRTISY--HEIALGALHDFGDRQDWQILMQQGEALLTLIAQ 279

Query: 366 GKLAAPAHKFVTLKNFQEAL 385
           GK+   A      +   EAL
Sbjct: 280 GKMEIAAPDIFRFEQMIEAL 299

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score =  117 bits (295), Expect = 7e-30
 Identities = 72/325 (22%), Positives = 123/325 (37%), Gaps = 16/325 (4%)

Query: 77  VYNQHGTP--LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVP 134
                G P  + +            + EV+V+     VN  DI   QG YP       + 
Sbjct: 33  DLKSFGGPDVMVIGKRPLPVA---GEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPIL 89

Query: 135 GFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGI 194
           G E  GE+V VG  VS  AVGD V       G +  Y       ++  PK     + + +
Sbjct: 90  GLELSGEIVGVGPGVSGYAVGDKVCGLANG-GAYAEYCLLPAGQILPFPKGYDAVKAAAL 148

Query: 195 TSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKL 254
                T +  L     L+ G+ V+ +G  S  G   IQ+AR +G +      +     K 
Sbjct: 149 PETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGST---GKC 205

Query: 255 KSYLKSLGADYVF--TEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTY 312
           +   + LGA        E+   + +  +     + L+ +G       + +L   G +   
Sbjct: 206 E-ACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGAAYFERNIASLAKDGCLSII 264

Query: 313 GGMS-REPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAP 371
             +      ++  S  + K +T+ G  M     E K  A R  +++E+  ++  G +A  
Sbjct: 265 AFLGGAVAEKVNLSPIMVKRLTVTGSTMRPRTAEEK-RAIRDDLLSEVWPLLEAGTVAPV 323

Query: 372 AHKFVTLKNFQEA--LMNTMSIQGK 394
            HK    ++  +A  L+   S  GK
Sbjct: 324 IHKVFAFEDVADAHRLLEEGSHVGK 348

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score =  116 bits (292), Expect = 2e-29
 Identities = 74/347 (21%), Positives = 140/347 (40%), Gaps = 61/347 (17%)

Query: 77  VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYP--IKPTLPAVP 134
             +++  PLR+  V+   L    + +V+V++  A V   D++ +QG++   ++P LP   
Sbjct: 20  RLHEYNKPLRIEDVDYPRLEG--RFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTL 77

Query: 135 GFEGVGEVVEVGSDVSSLAVGDHVI---------------------PDTQHLGTWRN--- 170
           G E VG + EV   V  L  GD VI                      + +  G   +   
Sbjct: 78  GHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGF 137

Query: 171 --YGKFNHDVLMKVPKDIALTEISGITSNPC---TAYRMLKD-YNSLSPGDVVIQNGANS 224
             + + +H  ++K+PKDI+  ++  +        TAYR +K    +L PG  V   G   
Sbjct: 138 AEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGV-G 196

Query: 225 ACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV--FTEEELRNISRDASIP 282
             G   +Q+ +     T+ I  +  + +KLK   + LGAD+V     + ++ +       
Sbjct: 197 GLGHIAVQLLKVMTPATV-IALDVKE-EKLK-LAERLGADHVVDARRDPVKQVMELTRGR 253

Query: 283 KPKLALNCVGGNSATNLLRTLVSKG---VMVTYGGMSREPVQIPTSAFIFKDITLRGH-W 338
              +A++ VG  +  +    L+ +    ++V YGG     ++ PT   I  +++  G   
Sbjct: 254 GVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYGG----ELRFPTIRVISSEVSFEGSLV 309

Query: 339 MTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEAL 385
               +            ++EL  +   GK+         L    + L
Sbjct: 310 GNYVE------------LHELVTLALQGKVRVEVDIH-KLDEINDVL 343

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D Length = 302

 Score =  111 bits (279), Expect = 5e-28
 Identities = 64/319 (20%), Positives = 106/319 (33%), Gaps = 45/319 (14%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
            V  + G PL +V +        ++ EVV+++    +N AD     G Y  +   P +PG
Sbjct: 4   WVLKRLGGPLELVDLPEPEA---EEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPG 60

Query: 136 FEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGIT 195
            E VG V            G          G            L+ +P+ ++  E +   
Sbjct: 61  MEVVGVV-----------EGRRYAALVPQ-GGLAERVAVPKGALLPLPEGLSPEEAAAFP 108

Query: 196 SNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK 255
            +  TAY  LK      PG+ V+   A  A G   +Q+AR  GL+ +         +KL 
Sbjct: 109 VSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRP---EKLA 164

Query: 256 SYLKSLGADYV--FTEEELR-------NISRDASIPKPKLALNCVGGNSATNLLRTLVSK 306
               +LGA+    + E   R       ++  +            V G      L  L   
Sbjct: 165 -LPLALGAEEAATYAEVPERAKAWGGLDLVLE------------VRGKEVEESLGLLAHG 211

Query: 307 GVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTG 366
           G +V  G    E   IP    + +++ + G W+           E    +  L   +   
Sbjct: 212 GRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFWL-TPLLREGALVEE--ALGFLLPRL-GR 267

Query: 367 KLAAPAHKFVTLKNFQEAL 385
           +L             + A 
Sbjct: 268 ELRPVVGPVFPFAEAEAAF 286

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score =  108 bits (273), Expect = 7e-27
 Identities = 71/294 (24%), Positives = 111/294 (37%), Gaps = 47/294 (15%)

Query: 77  VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGF 136
           V    G PL +  V    +      +V VK+  + V   D++   G +P+KPTLP +PG 
Sbjct: 7   VVRAFGAPLTIDEVP---VPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGH 63

Query: 137 EGVGEVVEVGSDVSSLAVGDHV-IP--------------------DTQHLGTWRNYGKF- 174
           EGVG V  VGS VS +  GD V +P                    + Q    +   G + 
Sbjct: 64  EGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTGYSVNGGYG 123

Query: 175 -----NHDVLMKVPKDIALTEISGITSNPC---TAYRMLKDYNSLSPGDVVIQNGANSAC 226
                + + +  +P  +   EI+ I    C   T Y+ LK  +   PG  V+ +G     
Sbjct: 124 EYVVADPNYVGLLPDKVGFVEIAPIL---CAGVTVYKGLKVTD-TRPGQWVVISGIGGL- 178

Query: 227 GQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV--FTEEELRNISRDASIPKP 284
           G   +Q AR  GL+   +     D  KL    + LGA+      + +     +   I   
Sbjct: 179 GHVAVQYARAMGLRVAAVDI---DDAKLN-LARRLGAEVAVNARDTDPAAWLQ-KEIGGA 233

Query: 285 KLALNCVGGNSATN-LLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGH 337
              L       A +  +  +   G +    G+       P    + K IT+RG 
Sbjct: 234 HGVLVTAVSPKAFSQAIGMVRRGGTIAL-NGLPPGDFGTPIFDVVLKGITIRGS 286

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score =  106 bits (267), Expect = 4e-26
 Identities = 75/294 (25%), Positives = 118/294 (40%), Gaps = 47/294 (15%)

Query: 77  VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGF 136
           V  Q   PL++  VE     ++   EV+V++    V   D++   G +P+KP LP +PG 
Sbjct: 5   VVEQFKEPLKIKEVE---KPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61

Query: 137 EGVGEVVEVGSDVSSLAVGDHV-IP--------------------DTQHLGTWRNYGKF- 174
           EGVG V EVG  V+ L VGD V IP                    + Q    +   G + 
Sbjct: 62  EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYA 121

Query: 175 -----NHDVLMKVPKDIALTEISGITSNPC---TAYRMLKDYNSLSPGDVVIQNGANSAC 226
                  D ++K+P +++  E + I    C   T Y+ LK      PG+ V   G     
Sbjct: 122 EYCRAAADYVVKIPDNLSFEEAAPIF---CAGVTTYKALKVTG-AKPGEWVAIYGI-GGL 176

Query: 227 GQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV--FTEEELRNISRDASIPKP 284
           G   +Q A+  GL  + +       +KL+   K LGAD V    +E+     ++  +   
Sbjct: 177 GHVAVQYAKAMGLNVVAVDIGD---EKLE-LAKELGADLVVNPLKEDAAKFMKEK-VGGV 231

Query: 285 KLALNCVGGNSATN-LLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGH 337
             A+       A      ++   G  V   G+  E + IP    +   I + G 
Sbjct: 232 HAAVVTAVSKPAFQSAYNSIRRGGACVL-VGLPPEEMPIPIFDTVLNGIKIIGS 284

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score =  106 bits (266), Expect = 1e-25
 Identities = 58/315 (18%), Positives = 98/315 (31%), Gaps = 37/315 (11%)

Query: 101 HEVVVKMLVAPVNPADINTIQGVYPI--------------KPTLPAVPGFEGVGEVVEVG 146
           +EV+VK+  A VNP D+N   G                      P   G +  G V+E G
Sbjct: 51  NEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFPLTLGRDVSGVVMECG 110

Query: 147 SDVSSLAVGDHVI--PDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRM 204
            DV     GD V         GT   +   + + +   PK +  T+ + +     TA+  
Sbjct: 111 LDVKYFKPGDEVWAAVPPWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSA 170

Query: 205 LKDYNSL----SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS 260
           +     L      G  V+  GA+   G   IQ+ + W      +             ++ 
Sbjct: 171 INKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDA-----SELVRK 225

Query: 261 LGADYV--FTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTL--VSKGVMVTYGGMS 316
           LGAD V  +    +    +   +      L+ VGG++ T     L   S    VT     
Sbjct: 226 LGADDVIDYKSGSVEEQLKS--LKPFDFILDNVGGSTETWAPDFLKKWSGATYVTLVTPF 283

Query: 317 REPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSM------MNELTEMMRTGKLAA 370
              +     A       +                           ++++ E++  GK+  
Sbjct: 284 LLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRWAFFMASGPCLDDIAELVDAGKIRP 343

Query: 371 PAHKFVTLKNFQEAL 385
              +        EA 
Sbjct: 344 VIEQTFPFSKVPEAF 358

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score =  105 bits (264), Expect = 1e-25
 Identities = 64/267 (23%), Positives = 110/267 (41%), Gaps = 15/267 (5%)

Query: 77  VYNQHGTP--LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVP 134
            +++ G P  L V  V   +     + EV++K+  + +N AD+   QG Y   P    + 
Sbjct: 27  HFDKPGGPENLYVKEVAKPSP---GEGEVLLKVAASALNRADLMQRQGQYDPPPGASNIL 83

Query: 135 GFEGVGEVVEVGSDVSS-LAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISG 193
           G E  G V E+G        +GD  +      G    Y      +LM +P+ + LT+ + 
Sbjct: 84  GLEASGHVAELGPGCQGHWKIGDTAMALLPG-GGQAQYVTVPEGLLMPIPEGLTLTQAAA 142

Query: 194 ITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDK 253
           I     TA+++L    ++  GD V+ +   S  G   IQ+ R  G   +    ++    K
Sbjct: 143 IPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQ---KK 199

Query: 254 LKSYLKSLGADYVF--TEEELRNISRDASIPKP-KLALNCVGGNSATNLLRTLVSKGVMV 310
           L+   + LGA   F   +E+    +   +      L L+C+GG+     +  L   G  V
Sbjct: 200 LQ-MAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGGSYWEKNVNCLALDGRWV 258

Query: 311 TYGGMSREPVQIPTSAFIF-KDITLRG 336
            YG M    +  P  + +  K  +L  
Sbjct: 259 LYGLMGGGDINGPLFSKLLFKRGSLIT 285

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score =  104 bits (262), Expect = 2e-25
 Identities = 68/355 (19%), Positives = 108/355 (30%), Gaps = 76/355 (21%)

Query: 77  VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPT-LPAVPG 135
            Y + G+   VV +   T       E+++K+  A +  +DI  +          LP   G
Sbjct: 5   QYTEIGSEPVVVDIPTPTPGP---GEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLG 61

Query: 136 FEGVGEVVEVGSDVSSLAVGDHVI-------------------------------PDTQH 164
            EGVG V E+G  V+   VGD V                                P    
Sbjct: 62  HEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGS 121

Query: 165 LGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPC---TAYRMLKDYNS-LSPGD-VVIQ 219
            G+   Y   +    +    D+     + +T       T Y  +      L PG   V+ 
Sbjct: 122 PGSMAEYMIVDSARHLVPIGDLDPVAAAPLT---DAGLTPYHAISRVLPLLGPGSTAVV- 177

Query: 220 NGANSACG---QNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEEELRN 274
                  G      IQI R      + I  + DD D+L    + +GAD            
Sbjct: 178 ----IGVGGLGHVGIQILRAVSAARV-IAVDLDD-DRLA-LAREVGADAAVKSGAGAADA 230

Query: 275 ISRDASIPKPKLALNCVGGNSATNLLRTLVSKG---VMVTYGGMSREPVQIPTSAFIFKD 331
           I             + VG  S  +  + +V+      +V   G+            I   
Sbjct: 231 IRELTGGQGATAVFDFVGAQSTIDTAQQVVAVDGHISVV---GIHAGAHAKVGFFMIPFG 287

Query: 332 ITLRG-HWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEAL 385
            ++   +W TR +            + E+  + R G+L      F TL     A 
Sbjct: 288 ASVVTPYWGTRSE------------LMEVVALARAGRLDIHTETF-TLDEGPAAY 329

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score =  102 bits (256), Expect = 2e-24
 Identities = 56/294 (19%), Positives = 106/294 (36%), Gaps = 45/294 (15%)

Query: 77  VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGF 136
           ++ +    L    +    +   + +E+++ +  + V   D++   G +P+   LP V G 
Sbjct: 10  IFYESHGKLEYKDIP---VPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGH 66

Query: 137 EGVGEVVEVGSDVSSLAVGDHV-IP--------------------DTQHLGTWRNYGKF- 174
           EG G VV +G +V    +GD+  I                         L  + + G F 
Sbjct: 67  EGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLSGYTHDGSFQ 126

Query: 175 -----NHDVLMKVPKDIALTEISGITSNPC---TAYRMLKDYNSLSPGDVVIQNGANSAC 226
                +      +P+   L +++ I    C   T Y+ LK  N L  G  V  +GA    
Sbjct: 127 QYATADAVQAAHIPQGTDLAQVAPIL---CAGITVYKALKSAN-LMAGHWVAISGAAGGL 182

Query: 227 GQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEEELRNISRDASIPK 283
           G   +Q A+  G + + I        K +   +S+G +       E+++      A+   
Sbjct: 183 GSLAVQYAKAMGYRVLGIDGGE---GKEE-LFRSIGGEVFIDFTKEKDIVGAVLKATDGG 238

Query: 284 PKLALNCVGGNSATN-LLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRG 336
               +N     +A     R + + G  V  G  +           + K I++ G
Sbjct: 239 AHGVINVSVSEAAIEASTRYVRANGTTVLVGMPAGAKCCSDVFNQVVKSISIVG 292

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score = 97.0 bits (242), Expect = 1e-22
 Identities = 59/311 (18%), Positives = 115/311 (36%), Gaps = 32/311 (10%)

Query: 76  LVYNQHG-----TPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTL 130
           + YN+         L  + +          H+++V++    VNP D    +   P   T 
Sbjct: 26  VGYNKPAPITDDASLLDIELPKPA---PAGHDILVEVKAVSVNPVDYKVRRSTPP-DGTD 81

Query: 131 PAVPGFEGVGEVVEVGSDVSSLAVGDHVI--PDTQHLGTWRNYGKFNHDVLMKVPKDIAL 188
             V G++  G V  VG DV+    GD V         GT   +   +  ++ + PK +  
Sbjct: 82  WKVIGYDAAGIVSAVGPDVTLFRPGDEVFYAGSIIRPGTNAEFHLVDERIVGRKPKTLDW 141

Query: 189 TEISGITSNPCTAYRMLKDYNSLSPGD------VVIQNGANSACGQNVIQIARHW-GLKT 241
            E + +     TA+    D   ++         ++I  GA    G   +QIAR    L  
Sbjct: 142 AEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGV-GSIAVQIARQRTDLTV 200

Query: 242 INIVRNRDDIDKLKSYLKSLGADYV--FTEEELRNISRDASIPKPKLALNCVGGNS-ATN 298
           I      +  +    ++KSLGA +V   ++     ++    +  P    +    +  A  
Sbjct: 201 IATASRPETQE----WVKSLGAHHVIDHSKPLAAEVAALG-LGAPAFVFSTTHTDKHAAE 255

Query: 299 LLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWM-TRWQKENKESAERKSMMN 357
           +   +  +G           P       F  K +++    M TR      + +E+  ++N
Sbjct: 256 IADLIAPQGRFCLIDD----PSAFDIMLFKRKAVSIHHELMFTRPMFGTPDMSEQGRLLN 311

Query: 358 ELTEMMRTGKL 368
           +++ ++  G+L
Sbjct: 312 DVSRLVDEGRL 322

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score = 96.5 bits (241), Expect = 2e-22
 Identities = 60/285 (21%), Positives = 106/285 (37%), Gaps = 25/285 (8%)

Query: 97  SVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGD 156
             + HE++VK+    VNP D              P V GF+ +G V  VG++V+    GD
Sbjct: 29  EPKVHEILVKIQSISVNPVDTKQRLMDVS---KAPRVLGFDAIGVVESVGNEVTMFNQGD 85

Query: 157 HVI--PDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKD------Y 208
            V         G+   Y   N  ++ K PK+I+  +   +     TAY  L D       
Sbjct: 86  IVYYSGSPDQNGSNAEYQLINERLVAKAPKNISAEQAVSLPLTGITAYETLFDVFGISRN 145

Query: 209 NSLSPGDVV-IQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV- 266
            + + G  + I NGA    G    QIA+ +GL+ I      + I+    + K +GAD V 
Sbjct: 146 RNENEGKTLLIINGA-GGVGSIATQIAKAYGLRVITTASRNETIE----WTKKMGADIVL 200

Query: 267 -FTEEELRNISRDASIPKPKLALNCVGGNSA-TNLLRTLVSKGVMVTYGGMSREPVQIPT 324
              E  L    +   I            +    ++++ +  +G + T             
Sbjct: 201 NHKESLLNQF-KTQGIELVDYVFCTFNTDMYYDDMIQLVKPRGHIATIVAF---ENDQDL 256

Query: 325 SAFIFKDITLRGHWM-TRWQKENKESAERKSMMNELTEMMRTGKL 368
           +A   K ++    +M  R   +  +  +    + ++T  +     
Sbjct: 257 NALKPKSLSFSHEFMFARPLNQTDDMIKHHEYLEDITNKVEQNIY 301

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 98.6 bits (246), Expect = 2e-22
 Identities = 71/305 (23%), Positives = 114/305 (37%), Gaps = 40/305 (13%)

Query: 101 HEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIP 160
            EV + M  A VN  D     G+YP      A  G EG G VVE G  V+ LA GD V+ 
Sbjct: 239 GEVRIAMRAAGVNFRDALIALGMYP----GVASLGSEGAGVVVETGPGVTGLAPGDRVM- 293

Query: 161 DTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQN 220
                  +      +H ++ ++P   +    + +     TAY  L D   L PG+ ++ +
Sbjct: 294 -GMIPKAFGPLAVADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLAGLRPGESLLVH 352

Query: 221 GANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDAS 280
            A    G   IQ+ARH G +           DK ++    L  +++ +       SR   
Sbjct: 353 SAAGGVGMAAIQLARHLGAEVYATASE----DKWQAV--ELSREHLAS-------SRTCD 399

Query: 281 IPKPKLA----------LNCVGGNSATNLLRTLVSKGVMVTYGGM-SREPVQIPTSAFIF 329
             +  L           LN + G  A   LR L   G  +  G    R+PV++   A   
Sbjct: 400 FEQQFLGATGGRGVDVVLNSLAGEFADASLRMLPRGGRFLELGKTDVRDPVEV---ADAH 456

Query: 330 KDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTM 389
             ++ +         +         M++EL E+     L         ++   EA +  +
Sbjct: 457 PGVSYQAFDTVEAGPQ-----RIGEMLHELVELFEGRVLEPLPVTAWDVRQAPEA-LRHL 510

Query: 390 SIQGK 394
           S Q +
Sbjct: 511 S-QAR 514

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score = 90.8 bits (226), Expect = 2e-20
 Identities = 68/384 (17%), Positives = 127/384 (33%), Gaps = 95/384 (24%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
           +V  +   PL     E   ++ + +  ++V++L A V  +D++  +G  P  P LP + G
Sbjct: 21  MVLEKFNQPLVYKEFE---ISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVP-LPIILG 76

Query: 136 FEGVGEVVEVGSDVSS-----LAVGDHVIP----------------------DTQHLGTW 168
            EG G VVEV  +        L  GD ++                       + +  G  
Sbjct: 77  HEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGIN 136

Query: 169 RNYGKFNH--------------DVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPG 214
           R   ++ H                ++KV +   L  ++    +  TAY    +Y     G
Sbjct: 137 RGCSEYPHLRGCYSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGATAYHAFDEYPESFAG 196

Query: 215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVFTEEELR 273
             V+  GA    G   + IAR  G + + ++         +  L + +GAD         
Sbjct: 197 KTVVIQGA-GPLGLFGVVIARSLGAENVIVI----AGSPNRLKLAEEIGADLTL------ 245

Query: 274 NISRDASIPKPKL------------ALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQ 321
           N    +   + K              L   G + A      L+ +G   +  G++     
Sbjct: 246 NRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDP 305

Query: 322 IPTSAF---IFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVT- 377
           +P   +   + K+ T +G W+     +            +   +           K +T 
Sbjct: 306 VPFKVYEWLVLKNATFKGIWV----SDTSH-------FVKTVSITSRNYQ--LLSKLITH 352

Query: 378 ---LKNFQEA--LMNTMSIQGKSG 396
              LK   +A  LM       ++ 
Sbjct: 353 RLPLKEANKALELME----SREAL 372

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score = 85.7 bits (213), Expect = 1e-18
 Identities = 52/344 (15%), Positives = 106/344 (30%), Gaps = 74/344 (21%)

Query: 85  LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVE 144
           + V  V           +++VK+    +   D + + G +P  P  P   G E  G VVE
Sbjct: 35  ISVRNVGIPEPG---PDDLLVKVEACGICGTDRHLLHGEFPSTP--PVTLGHEFCGIVVE 89

Query: 145 VGSDVSSLAVGDHVI---------------------PDTQHLGTWRN-----YGKFNHDV 178
            GS V  +A G  +                       + + +G  R+     Y       
Sbjct: 90  AGSAVRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRAIGIHRDGGFAEYVLVPRKQ 149

Query: 179 LMKVPKDI-----ALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQI 233
             ++P  +     A  E      +      +      +  G  V   G     G   +Q+
Sbjct: 150 AFEIPLTLDPVHGAFCEPLACCLH---GVDLSG----IKAGSTVAILGG-GVIGLLTVQL 201

Query: 234 ARHWGLKTINIVRNRDDIDKLK-SYLKSLGADYVF--TEEELRNISRDASIPKPK---LA 287
           AR  G  T+ +          K    + +GA      +  ++           P    + 
Sbjct: 202 ARLAGATTVILS----TRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVV 257

Query: 288 LNCVGGNSATNL-LRTLVSKGVMVTYGGMSRE-PVQIPTSAFIFKDITLRGHWMTRWQKE 345
           + C G         R   + G +V  G + +   V+I     +F+++ + G ++      
Sbjct: 258 IECAGVAETVKQSTRLAKAGGTVVILGVLPQGEKVEIEPFDILFRELRVLGSFI------ 311

Query: 346 NKESAERKSMMNELTEMMRTGKLAAPAHKFVT----LKNFQEAL 385
                    +     +++ TG +     + ++    L    + +
Sbjct: 312 ------NPFVHRRAADLVATGAI--EIDRMISRRISLDEAPDVI 347

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score = 85.3 bits (212), Expect = 1e-18
 Identities = 74/361 (20%), Positives = 127/361 (35%), Gaps = 67/361 (18%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTL--PAV 133
           ++  + G    +V V+          EV++K+L   +   D++  +     +  +  P +
Sbjct: 8   IMKTKPGYGAELVEVDVPK---PGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQI 64

Query: 134 PGFEGVGEVVEVGSDVSSLAVGDHVI---------------------PDTQHLGTWRN-- 170
            G E  GEVVE+G  V  + VGD+V                       +T+  G   +  
Sbjct: 65  MGHEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGV 124

Query: 171 ---YGKFNHDVLMKVPKDI-----ALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGA 222
              Y       + K PK I      L E  G   +   A  +         G  V+  GA
Sbjct: 125 FAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAVDTVLAGPI--------SGKSVLITGA 176

Query: 223 NSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEEELRNISRDAS 280
               G   I +A+  G   + +    +  D  +   K +GADYV    EE++     D +
Sbjct: 177 -GPLGLLGIAVAKASGAYPVIVS---EPSDFRRELAKKVGADYVINPFEEDVVKEVMDIT 232

Query: 281 IPK-PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFI-FKDITLRGHW 338
                 + L   G   A       V+    V+  G+    V I  +  I FK +T+ G  
Sbjct: 233 DGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPGKVTIDFNNLIIFKALTIYGIT 292

Query: 339 MTRWQKENKESAERKSMMNELTEMMRTGKLAAPA---HKFVTLKNFQEALMNTMSIQGKS 395
                +     +           ++++GKL       HK+     ++EA    +   GK+
Sbjct: 293 GRHLWETWYTVS----------RLLQSGKLNLDPIITHKYKGFDKYEEAF--ELMRAGKT 340

Query: 396 G 396
           G
Sbjct: 341 G 341

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score = 82.6 bits (205), Expect = 1e-17
 Identities = 64/345 (18%), Positives = 109/345 (31%), Gaps = 74/345 (21%)

Query: 100 KHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVI 159
           + EV VK+  + +  +D+  I          P   G E  G +  VGS V  L  GD V 
Sbjct: 25  QDEVRVKIASSGLCGSDLPRIFKNGAHYY--PITLGHEFSGYIDAVGSGVDDLHPGDAVA 82

Query: 160 ---------------------PDTQHLGT-----WRNYGKFNHDVLMKVPKDI-----AL 188
                                     +G+     +  Y       +  +P D+     A 
Sbjct: 83  CVPLLPCFTCPECLKGFYSQCAKYDFIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAF 142

Query: 189 TEISGITSNPCT----AYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINI 244
            E       P T    A+ + +          VI  GA    G   IQ A   G K++  
Sbjct: 143 IE-------PITVGLHAFHLAQ----GCENKNVIIIGA-GTIGLLAIQCAVALGAKSVTA 190

Query: 245 VRNRDDIDKLK-SYLKSLGADYVF--TEEELRNISRDASIPK-PKLALNCVGGNSATNLL 300
           +    DI   K +  KS GA   F  +E     +       +  +L L   G      L 
Sbjct: 191 I----DISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQLILETAGVPQTVELA 246

Query: 301 RTLVSKGVMVTYGGMSREPVQIPTSAF---IFKDITLRGHWMTRWQKENKESAERKSMMN 357
             +      +   G   + + + ++ F   + K++T+ G WM      N  S        
Sbjct: 247 VEIAGPHAQLALVGTLHQDLHLTSATFGKILRKELTVIGSWM------NYSSPWPGQEWE 300

Query: 358 ELTEMMRTGKLAAPAHKFVT----LKNFQEALMNTMSIQGKSGVK 398
             + ++   KL       +      ++F +A+ +    +     K
Sbjct: 301 TASRLLTERKL--SLEPLIAHRGSFESFAQAVRDIA--RNAMPGK 341

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* Length = 330

 Score = 80.8 bits (200), Expect = 4e-17
 Identities = 65/283 (22%), Positives = 106/283 (37%), Gaps = 42/283 (14%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
           L   ++   + V  V+  +   + K  V++K+  + +N  D    +    I    P + G
Sbjct: 8   LQAEKNADDVSV-HVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILG 66

Query: 136 FEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRN-----YGKFNHDVLMKVPKDIALTE 190
            +  G VV   S+    A GD VI  +  LG  R+     Y     D L+ +P++++L E
Sbjct: 67  IDAAGTVVS--SNDPRFAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKE 124

Query: 191 ISGITSNPCTA---YRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN 247
                +   TA      L+          V+  GA    G   + +    G   +    N
Sbjct: 125 AMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGN 184

Query: 248 RDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALN---------CVGGNSATN 298
           R+  D    YLK LGA  V        ISR+        AL+          VGG    +
Sbjct: 185 REAAD----YLKQLGASEV--------ISREDVYDGTLKALSKQQWQGAVDPVGGKQLAS 232

Query: 299 LLRTLVSKGVMVTYG---GMSREPVQIPTSA--FIFKDITLRG 336
           LL  +   G +   G   G      ++P +   FI + ++L G
Sbjct: 233 LLSKIQYGGSVAVSGLTGGG-----EVPATVYPFILRGVSLLG 270

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512

 Score = 83.0 bits (205), Expect = 4e-17
 Identities = 48/310 (15%), Positives = 92/310 (29%), Gaps = 22/310 (7%)

Query: 85   LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVE 144
            +R V             + +  +    +N  D+    G         ++PG     + + 
Sbjct: 1544 IRWVCSPLHYALPASCQDRLCSVYYTSLNFRDVMLATGKLSP----DSIPGKWLTRDCML 1599

Query: 145  VGSDVSSLAVGDHV--IPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAY 202
                    A G  V  +   + L T             +VP    L E + +     TAY
Sbjct: 1600 GMEFSGRDASGRRVMGMVPAEGLAT---SVLLLQHATWEVPSTWTLEEAASVPIVYTTAY 1656

Query: 203  RMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG 262
              L     + PG+ V+ +  +   GQ  I IA   G +    V + +    L++    L 
Sbjct: 1657 YSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARFPQLD 1716

Query: 263  ADYVFT------EEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMS 316
                        E+ +   +    +    L LN +        +R L   G  +  G   
Sbjct: 1717 ETCFANSRDTSFEQHVLRHTAGKGV---DLVLNSLAEEKLQASVRCLAQHGRFLEIGKFD 1773

Query: 317  -REPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKF 375
                  +  + F  K++T   H +       +  A  + +   L   ++ G +       
Sbjct: 1774 LSNNHALGMAVF-LKNVTF--HGILLDSLFEEGGATWQEVSELLKAGIQEGVVQPLKCTV 1830

Query: 376  VTLKNFQEAL 385
                  + A 
Sbjct: 1831 FPRTKVEAAF 1840

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score = 75.7 bits (187), Expect = 3e-15
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 4/79 (5%)

Query: 82  GTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGE 141
           G PL +  +E   +   + HEV +K++   V   D  T+ G  P +   P + G  G G 
Sbjct: 16  GKPLSIEEIE---VAPPKAHEVRIKIIATAVCHTDAYTLSGADP-EGCFPVILGHLGAGI 71

Query: 142 VVEVGSDVSSLAVGDHVIP 160
           V  VG  V+ L  GD VIP
Sbjct: 72  VESVGEGVTKLKAGDTVIP 90

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 Length = 328

 Score = 75.4 bits (186), Expect = 3e-15
 Identities = 61/283 (21%), Positives = 106/283 (37%), Gaps = 42/283 (14%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
            V N+  T      V+  +++ + + +V+V++  + VN  D         I  T P VPG
Sbjct: 7   FVVNKTETEFTA-GVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPG 65

Query: 136 FEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRN-----YGKFNHDVLMKVPKDIALTE 190
            +  G VV   S       GD VI     +G         Y + + + L+ +PK + L E
Sbjct: 66  IDLAGVVVS--SQHPRFREGDEVIATGYEIGVTHFGGYSEYARLHGEWLVPLPKGLTLKE 123

Query: 191 ISGITSNPCTA---YRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN 247
              I +   TA      L+++        V+  GA    G   + +    G         
Sbjct: 124 AMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGK 183

Query: 248 RDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALN---------CVGGNSATN 298
             + D    YL+ LGA  V        ++R+  + +    L+          VGG +   
Sbjct: 184 AAEHD----YLRVLGAKEV--------LAREDVMAERIRPLDKQRWAAAVDPVGGRTLAT 231

Query: 299 LLRTLVSKGVMVTYG---GMSREPVQIPTSA--FIFKDITLRG 336
           +L  +   G +   G   G      ++PT+   FI + ++L G
Sbjct: 232 VLSRMRYGGAVAVSGLTGGA-----EVPTTVHPFILRGVSLLG 269

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score = 75.0 bits (185), Expect = 5e-15
 Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 5/79 (6%)

Query: 82  GTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGE 141
             PL + T+    +   + HEV +K+L + +  +D + ++ + P K   P + G E VG 
Sbjct: 19  HKPLSLETIT---VAPPKAHEVRIKILASGICGSDSSVLKEIIPSK--FPVILGHEAVGV 73

Query: 142 VVEVGSDVSSLAVGDHVIP 160
           V  +G+ V+ +  GD VIP
Sbjct: 74  VESIGAGVTCVKPGDKVIP 92

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score = 73.8 bits (182), Expect = 1e-14
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 5/79 (6%)

Query: 82  GTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGE 141
             P  +  VE   +   + HEV +KM+   +  +D + + G       LP + G E  G 
Sbjct: 18  KKPFSIEEVE---VAPPKAHEVRIKMVATGICRSDDHVVSGTLVTP--LPVIAGHEAAGI 72

Query: 142 VVEVGSDVSSLAVGDHVIP 160
           V  +G  V+++  GD VIP
Sbjct: 73  VESIGEGVTTVRPGDKVIP 91

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* Length = 324

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 56/281 (19%), Positives = 98/281 (34%), Gaps = 40/281 (14%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
           L+  Q        +V++   + +   +V V +  + +N  D   I G   I    P +PG
Sbjct: 4   LILEQQDGKTLA-SVQHLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKIIRHFPMIPG 62

Query: 136 FEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRN-----YGKFNHDVLMKVPKDIALTE 190
            +  G V    S+      G  V+     +G           +   D L+ +P  ++   
Sbjct: 63  IDFAGTVHA--SEDPRFHAGQEVLLTGWGVGENHWGGLAERARVKGDWLVALPAGLSSRN 120

Query: 191 ISGITSNPCTA---YRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN 247
              I +   TA      L+D         V+  GA+   G   + +    G +   +   
Sbjct: 121 AMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGYQVAAVSGR 180

Query: 248 RDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKL-------ALNCVGGNSATNLL 300
                    YLKSLGA+ +        +SRD       L       A++ VG      +L
Sbjct: 181 ESTHG----YLKSLGANRI--------LSRDEFAESRPLEKQLWAGAIDTVGDKVLAKVL 228

Query: 301 RTLVSKGVMVTYG---GMSREPVQIPTSA--FIFKDITLRG 336
             +   G +   G   G       +PT+   FI +++ L+G
Sbjct: 229 AQMNYGGCVAACGLAGGF-----ALPTTVMPFILRNVRLQG 264

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score = 73.8 bits (182), Expect = 1e-14
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 5/79 (6%)

Query: 82  GTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGE 141
           G+PL +  +E   ++  +  EV ++++   V P DIN            P V G E  G 
Sbjct: 18  GSPLCIEEIE---VSPPKACEVRIQVIATCVCPTDINATDPKKK--ALFPVVLGHECAGI 72

Query: 142 VVEVGSDVSSLAVGDHVIP 160
           V  VG  V++   GD VIP
Sbjct: 73  VESVGPGVTNFKPGDKVIP 91

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score = 73.6 bits (181), Expect = 2e-14
 Identities = 52/333 (15%), Positives = 94/333 (28%), Gaps = 78/333 (23%)

Query: 121 QGVYPIKPTLPAVPGFEGVGEVVEVGSDVSS------LAVGDHVI--------------- 159
             +YP     P   G E  G VVE G +  +        +G+ V                
Sbjct: 82  YILYPGLTGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAE 141

Query: 160 ------PDTQHLGTWRN-----YGKFNHDVLMKVPKDI------------ALTEISGITS 196
                  +   LG   +     Y K +      + +              +L E + +  
Sbjct: 142 GFPNHCENLNELGFNVDGAFAEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAY 201

Query: 197 NPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKS 256
           N             + PGD V+  G     G   + I +H G   + +     +  +++ 
Sbjct: 202 NAVIVRGG-----GIRPGDNVVILGG-GPIGLAAVAILKHAGASKVILS----EPSEVRR 251

Query: 257 YL-KSLGADYVF--TEEELRNISRDASIPK-PKLALNCVGGNSATNL-LRTLVSKG---- 307
            L K LGAD+V   T+E       D +     KL L   G        +  ++ +     
Sbjct: 252 NLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGIN 311

Query: 308 VMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGK 367
             V     +   + +    F  +   + G                      +  +M +G 
Sbjct: 312 ATVAIVARADAKIPLTGEVFQVRRAQIVGSQ----------GHSGHGTFPRVISLMASGM 361

Query: 368 LAAPA--HKFVTLKNFQEALMNTMSIQGKSGVK 398
                      +++   E +        KS VK
Sbjct: 362 DMTKIISKTV-SMEEIPEYI--KRLQTDKSLVK 391

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score = 72.6 bits (179), Expect = 3e-14
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 5/79 (6%)

Query: 82  GTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGE 141
           G    +  ++   +   Q  EV+VK++   +   D+      YP+   LPAV G EG G 
Sbjct: 16  GADFELQALK---IRQPQGDEVLVKVVATGMCHTDLIVRDQKYPVP--LPAVLGHEGSGI 70

Query: 142 VVEVGSDVSSLAVGDHVIP 160
           +  +G +V+ L VGDHV+ 
Sbjct: 71  IEAIGPNVTELQVGDHVVL 89

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score = 71.8 bits (177), Expect = 4e-14
 Identities = 68/356 (19%), Positives = 115/356 (32%), Gaps = 79/356 (22%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQ----GVYPIKPTLP 131
           L        L +V             E++V++  A +   D++  +        I+P  P
Sbjct: 4   LAKLAPEEGLTLVDRPVPE---PGPGEILVRVEAASICGTDLHIWKWDAWARGRIRP--P 58

Query: 132 AVPGFEGVGEVVEVGSDVSSLAVGDHVI---------------------PDTQHLGT--- 167
            V G E  G V  VG  V    VGDHV                       +TQ LG    
Sbjct: 59  LVTGHEFSGVVEAVGPGVRRPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQILGVDRD 118

Query: 168 --WRNYGKFNHDVLMKVPKDI-----ALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQN 220
             +  Y     +     PKD+     A+ E  G   +  T Y       S   G  V+  
Sbjct: 119 GGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAVH--TVYAG-----SGVSGKSVLIT 171

Query: 221 GANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK-SYLKSLGADYV-FTEEELRNISRD 278
           GA    G     + R  G   I +     D +  + ++ +      V   EE+L  + R 
Sbjct: 172 GA-GPIGLMAAMVVRASGAGPILVS----DPNPYRLAFARPYADRLVNPLEEDLLEVVRR 226

Query: 279 ASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIP-TSAFIFKDITLRGH 337
            +    ++ L   G  +A +     +  G      G+  +P++       + + IT  G 
Sbjct: 227 VTGSGVEVLLEFSGNEAAIHQGLMALIPGGEARILGIPSDPIRFDLAGELVMRGITAFGI 286

Query: 338 WMTR----WQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVT----LKNFQEAL 385
              R    W +               T ++ +G++       +T    L  ++EA 
Sbjct: 287 AGRRLWQTWMQ--------------GTALVYSGRV--DLSPLLTHRLPLSRYREAF 326

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score = 70.9 bits (174), Expect = 1e-13
 Identities = 53/384 (13%), Positives = 115/384 (29%), Gaps = 78/384 (20%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPI----KPTLP 131
           ++       ++V  V+ + L+S    ++ ++ +   +  AD   + G   +    K    
Sbjct: 4   IIVKPPNAGVQVKDVDEKKLDS--YGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDF 61

Query: 132 AVPGFEGVGEVVEVGSDVSSLAVGDHVIPDT--------------QHL------------ 165
            V G E +G V E        + GD V+P                               
Sbjct: 62  LVLGHEAIGVVEESYHGF---SQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIH 118

Query: 166 ---GTWRNYGKFNHDVLMKVPKDI----ALTEISGI-------TSNPCTAYRMLKDYNSL 211
              G  R +   +   L+K+PK I     L +                    +    +  
Sbjct: 119 KMDGFMREWWYDDPKYLVKIPKSIEDIGILAQPLADIEKSIEEILEVQKRVPVWTCDDGT 178

Query: 212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE 271
                V+  G     G     + R +GL+     R R+  +  ++ ++    +Y  +   
Sbjct: 179 LNCRKVLVVGTGPI-GVLFTLLFRTYGLEVWMANR-REPTEVEQTVIEETKTNYYNSSNG 236

Query: 272 LRNISRDASIPKPKLALNCVGGNSAT--NLLRTLVSKGVMVTYG---GMSREPVQIPTSA 326
              +    S+ K  + ++  G +     N++  L   GV+  +G     S          
Sbjct: 237 YDKLK--DSVGKFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTSGSVPLDYKTLQE 294

Query: 327 FIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPA-------HKFVTLK 379
            +  + T+ G               +K    +    + + K   P            ++ 
Sbjct: 295 IVHTNKTIIGLVNG-----------QKPHFQQAVVHLASWKTLYPKAAKMLITKTV-SIN 342

Query: 380 NFQEALMNTMSIQGKSGVKYYIDF 403
           + +E L   +  +    +K  I +
Sbjct: 343 DEKELL-KVLREKEHGEIKIRILW 365

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score = 70.7 bits (174), Expect = 1e-13
 Identities = 59/317 (18%), Positives = 102/317 (32%), Gaps = 73/317 (23%)

Query: 125 PIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHV-----IPD------------------ 161
           P+      V G E  GEV+ V   V S+ VGD V     +                    
Sbjct: 67  PMIVECDHVLGHESAGEVIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVD 126

Query: 162 ---TQHL-GTWRNYGKFNHDVLMKVPKDIALTEISGI--TSNPCTAYRMLKDYNSLSPGD 215
              T  + G  R Y         K+  +++    + +   S      +       +  GD
Sbjct: 127 FLSTPPVPGLLRRYVNHPAVWCHKIG-NMSYENGAMLEPLSVALAGLQRAG----VRLGD 181

Query: 216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK-SYLKSLGADYVF------- 267
            V+  GA    G   +  A+  G   + I     DID+ +  + K +  + V        
Sbjct: 182 PVLICGA-GPIGLITMLCAKAAGACPLVIT----DIDEGRLKFAKEICPEVVTHKVERLS 236

Query: 268 TEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAF 327
            EE  + I       +P +AL C G  S+       V  G  V   G+ +  +QIP    
Sbjct: 237 AEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFGGKVFVIGVGKNEIQIPFMRA 296

Query: 328 IFKDITLRGHWMTRWQKENKESAERKSMMNE---LTEMMRTGKLAAPAHKFVT----LKN 380
             +++ L+  +                  N       ++  G +     + VT    L++
Sbjct: 297 SVREVDLQFQYR---------------YCNTWPRAIRLVENGLV--DLTRLVTHRFPLED 339

Query: 381 FQEALMNTMSIQGKSGV 397
             +A     +   K+G 
Sbjct: 340 ALKAF--ETASDPKTGA 354

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score = 68.8 bits (169), Expect = 4e-13
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 4/79 (5%)

Query: 82  GTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGE 141
             PL +  +E   ++    +E+ +K++   V   D+  +          P V G EG G 
Sbjct: 18  NKPLVIEEIE---VDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDG-FPVVLGHEGAGI 73

Query: 142 VVEVGSDVSSLAVGDHVIP 160
           V  VG  V+    G+ VIP
Sbjct: 74  VESVGPGVTEFQPGEKVIP 92

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* Length = 333

 Score = 68.7 bits (169), Expect = 5e-13
 Identities = 60/276 (21%), Positives = 97/276 (35%), Gaps = 53/276 (19%)

Query: 137 EGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDI-------ALT 189
           + V  VVE  S  S+   G  V         W  +   +   L K+  +           
Sbjct: 70  QQVARVVE--SKNSAFPAGSIV----LAQSGWTTHFISDGKGLEKLLTEWPDKLPLSLAL 123

Query: 190 EISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD 249
              G+     TAY  L +   +  G+ V+ + A  A G  V QIA+  G K +    + +
Sbjct: 124 GTIGMPGL--TAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDE 181

Query: 250 DIDKLKSYLKSLGADYVF---TEEELRNISRDASIPKPKLALNC----------VGG--- 293
            I     YLK +G D  F   T   L             L              VGG   
Sbjct: 182 KIA----YLKQIGFDAAFNYKTVNSLEE----------ALKKASPDGYDCYFDNVGGEFL 227

Query: 294 NSATNLLRT---LVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESA 350
           N+  + ++    +   G +  Y  M + P      + I+K + + G  + RWQ + +E A
Sbjct: 228 NTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKA 287

Query: 351 ERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALM 386
            R     +L + +  GK+    H     +N   A +
Sbjct: 288 LR-----DLMKWVLEGKIQYHEHVTKGFENMPAAFI 318

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score = 68.4 bits (168), Expect = 6e-13
 Identities = 53/253 (20%), Positives = 87/253 (34%), Gaps = 52/253 (20%)

Query: 122 GVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHV-----IPD--------------- 161
           G + +K   P V G E  G V +VGS V  L  GD V      P                
Sbjct: 57  GNFIVKK--PMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSP 114

Query: 162 ------TQHL-GTWRNYGKFNHDVLMKVPKDI-----ALTEISGITSNPCTAYRMLKDYN 209
                 T    G    + K N     K+P ++     AL E     S    A R      
Sbjct: 115 SIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIE---PLSVGIHACRRGG--- 168

Query: 210 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK-SYLKSLGADYVF- 267
            ++ G  V+  GA    G   + +A+  G   + +     D+   + S  K +GAD V  
Sbjct: 169 -VTLGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVT----DLSATRLSKAKEIGADLVLQ 222

Query: 268 ----TEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIP 323
               + +E+          KP++ + C G  ++          G  +   G+  E   +P
Sbjct: 223 ISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVP 282

Query: 324 TSAFIFKDITLRG 336
                 +++ ++G
Sbjct: 283 LLHAAIREVDIKG 295

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score = 66.5 bits (163), Expect = 2e-12
 Identities = 55/295 (18%), Positives = 97/295 (32%), Gaps = 63/295 (21%)

Query: 88  VTVENETLNSVQKHEVVVKMLVAPVNPADINTIQ--GVYPIKPTLPAVPGFEGVGEVVEV 145
           + +E   +   ++ EV+++M    +  +D++  +   +       P V G E  G VV+V
Sbjct: 16  LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKV 75

Query: 146 GSDVSSLAVGDHV-----IPD---------------------TQHL-GTWRNYGKFNHDV 178
           G +V  L  GD V     +P                      T    G    Y     D 
Sbjct: 76  GKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADF 135

Query: 179 LMKVPKDI-----ALTEISGITSNPCT----AYRMLKDYNSLSPGDVVIQNGANSACGQN 229
             K+P ++     AL E       P +    A R       +  G  V+  GA    G  
Sbjct: 136 CHKLPDNVSLEEGALLE-------PLSVGVHACRRAG----VQLGTTVLVIGA-GPIGLV 183

Query: 230 VIQIARHWGLKTINIVRNRDDIDKLK-SYLKSLGADYVFT-------EEELRNISRDASI 281
            +  A+ +G   +            +    K+ GAD           E  +    R A  
Sbjct: 184 SVLAAKAYGAFVV-CT----ARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIG 238

Query: 282 PKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRG 336
             P + ++C G      +   +   G  +   GM  + V +P      ++I ++ 
Sbjct: 239 DLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKS 293

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* Length = 345

 Score = 66.0 bits (162), Expect = 4e-12
 Identities = 62/343 (18%), Positives = 110/343 (32%), Gaps = 67/343 (19%)

Query: 81  HGTP----LRVVTVENETLNSVQKHEVVVKMLVAPVNPA------DINTIQGVY--PIKP 128
            G P        T   E       + V+VK L    +P         +           P
Sbjct: 15  SGFPTESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMRIRMGKPDPSTAALAQAYTP 74

Query: 129 TLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIAL 188
             P + G+ GV  ++E  S       GD +      +  W  Y                 
Sbjct: 75  GQP-IQGY-GVSRIIE--SGHPDYKKGDLL----WGIVAWEEYSVITPMTHAHFKIQHTD 126

Query: 189 TEIS------GITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTI 242
             +S      G+     TAY    +  S   G+ V  + A+ A GQ V Q+A+  G   +
Sbjct: 127 VPLSYYTGLLGMPGM--TAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVV 184

Query: 243 NIVRNRDDIDKLKSYLKSLGADYVF---TEEELRNISRDASIPKPKLALNC--------- 290
               +++ +D LK      G D  F    E +L             L             
Sbjct: 185 GSAGSKEKVDLLK---TKFGFDDAFNYKEESDLTA----------ALKRCFPNGIDIYFE 231

Query: 291 -VGG---NSATNLLRT---LVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQ 343
            VGG   ++    +     +   G++  Y   ++E V   ++  I+K   ++G  ++ + 
Sbjct: 232 NVGGKMLDAVLVNMNMHGRIAVCGMISQYNLENQEGVHNLSN-IIYKRNRIQGFVVSDFY 290

Query: 344 KENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALM 386
            +  +       +  +   +R GK+         L+   EAL+
Sbjct: 291 DKYSK------FLEFVLPHIREGKITYVEDVADGLEKAPEALV 327

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score = 61.4 bits (150), Expect = 1e-10
 Identities = 67/290 (23%), Positives = 105/290 (36%), Gaps = 81/290 (27%)

Query: 101 HEVVVKMLVAPVNPADINTIQG-----VYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVG 155
            +V  K+L   V  +D+++I+      +YP+      VPG E VGEV EVGS V  + VG
Sbjct: 42  EDVRFKVLYCGVCHSDLHSIKNDWGFSMYPL------VPGHEIVGEVTEVGSKVKKVNVG 95

Query: 156 DHV-----------------------------IPDTQHLGTWRNYGKF------NHDVLM 180
           D V                                  H GT   YG +      N   ++
Sbjct: 96  DKVGVGCLVGACHSCESCANDLENYCPKMILTYASIYHDGTI-TYGGYSNHMVANERYII 154

Query: 181 KVPKDIALTEIS-----GITSNPCTAYRMLKDYNSLSPGD---VVIQNGANSACGQNVIQ 232
           + P ++ L   +     GI     T Y  LK +    PG    +V   G     G   ++
Sbjct: 155 RFPDNMPLDGGAPLLCAGI-----TVYSPLKYFGLDEPGKHIGIVGLGG----LGHVAVK 205

Query: 233 IARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPK-----LA 287
            A+ +G K   I  +     K +  LK+ GAD          +SRD    +         
Sbjct: 206 FAKAFGSKVTVISTSP---SKKEEALKNFGADSFL-------VSRDQEQMQAAAGTLDGI 255

Query: 288 LNCVGGNSATN-LLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRG 336
           ++ V        L   L S G ++   G   +P+++P  + I     + G
Sbjct: 256 IDTVSAVHPLLPLFGLLKSHGKLILV-GAPEKPLELPAFSLIAGRKIVAG 304

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 61/292 (20%), Positives = 101/292 (34%), Gaps = 71/292 (24%)

Query: 94  TLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLA 153
           TL      +V ++++   +   D++  +         P VPG E VGEVVEVGSDVS   
Sbjct: 28  TLRETGPEDVNIRIICCGICHTDLHQTKNDLG-MSNYPMVPGHEVVGEVVEVGSDVSKFT 86

Query: 154 VGDHV-----------------------------IPDTQHLGTWRNYGKF------NHDV 178
           VGD V                               D    G     G F      +   
Sbjct: 87  VGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQP-TQGGFAKATVVHQKF 145

Query: 179 LMKVPKDIALTEIS-----GITSNPCTAYRMLKDYNSLSPGD---VVIQNGANSACGQNV 230
           ++K+P+ +A+ + +     G+     T Y  L  +    PG    ++   G     G   
Sbjct: 146 VVKIPEGMAVEQAAPLLCAGV-----TVYSPLSHFGLKQPGLRGGILGLGGV----GHMG 196

Query: 231 IQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPK----- 285
           ++IA+  G     I  +     K +  L+ LGAD          I  D +          
Sbjct: 197 VKIAKAMGHHVTVISSSN---KKREEALQDLGADDYV-------IGSDQAKMSELADSLD 246

Query: 286 LALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRG 336
             ++ V  + +    L  L   G ++  G ++  P+Q  T   +     + G
Sbjct: 247 YVIDTVPVHHALEPYLSLLKLDGKLILMGVIN-NPLQFLTPLLMLGRKVITG 297

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* Length = 357

 Score = 60.7 bits (148), Expect = 2e-10
 Identities = 51/283 (18%), Positives = 104/283 (36%), Gaps = 54/283 (19%)

Query: 137 EGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEIS---- 192
            G+G + E  S  ++L  GD V   + +   W+     + + L KV   +    +S    
Sbjct: 83  GGIGIIEE--SKHTNLTKGDFVT--SFYWP-WQTKVILDGNSLEKVDPQLVDGHLSYFLG 137

Query: 193 --GITSNPCTAYRMLKDYNSLSPGD---VVIQNGANSACGQNVIQIARHWGL-KTINIVR 246
             G+     T+   +++   ++ G    +V+ +GA  ACG    QI    G  + + I  
Sbjct: 138 AIGMPGL--TSLIGIQEKGHITAGSNKTMVV-SGAAGACGSVAGQIGHFLGCSRVVGICG 194

Query: 247 NRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNC----------VGGNSA 296
             +    L      LG D         N  +  ++ + +L  +C          VGGN +
Sbjct: 195 THEKCILLT---SELGFDAAI------NY-KKDNVAE-QLRESCPAGVDVYFDNVGGNIS 243

Query: 297 TNLLRTLVSKGVMVTYGGMSR----EPVQIPT-----SAFIFKDITLRGHWMTRWQKENK 347
             ++  +     ++  G +S+     P   P      +    ++IT     +  ++ + +
Sbjct: 244 DTVISQMNENSHIILCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYKDKFE 303

Query: 348 ESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMS 390
                     +L++  + GKL         L+N   A  + M+
Sbjct: 304 PGIL------QLSQWFKEGKLKIKETVINGLENMGAAFQSMMT 340

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 63/367 (17%), Positives = 105/367 (28%), Gaps = 73/367 (19%)

Query: 85  LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTL--PAVPGFEGVGEV 142
             V+          +  E +V+ L   V   D   I G +   P      V G E VG V
Sbjct: 13  PVVIEKPRPEP---ESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVLGHEAVGVV 69

Query: 143 VEVGSDVSSLAVGDHVI-----------------------PDTQHL--------GTWRNY 171
           V+     + L  GD V+                       PD  +         G    +
Sbjct: 70  VDPN--DTELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVGAHGYMSEF 127

Query: 172 GKFNHDVLMKVPKDI----ALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACG 227
                  L+++P+       L E   IT          +      P    +  G   + G
Sbjct: 128 FTSPEKYLVRIPRSQAELGFLIEPISITEKALEHAYASRSAFDWDPSSAFVL-GN-GSLG 185

Query: 228 QNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPK 285
              + + +    G + +  +  RD  D     ++ L A YV + +       D    +  
Sbjct: 186 LLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYVDSRQTPVEDVPDVY-EQMD 244

Query: 286 LALNCVGGNSATNL-LRTLVSKGVMVTYGGMSREPVQIPTSAF----IFKDITLRGHWMT 340
                 G        ++ L   GV    G  S    ++   AF    +  +  L G    
Sbjct: 245 FIYEATGFPKHAIQSVQALAPNGVGALLGVPSDWAFEVDAGAFHREMVLHNKALVGSV-- 302

Query: 341 RWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVT----LKNFQEALMNTMSIQGKSG 396
               E+ E+A             +  K        VT    L  F+ A  +       + 
Sbjct: 303 NSHVEHFEAA--------TVTFTKLPKW--FLEDLVTGVHPLSEFEAAFDD-----DDTT 347

Query: 397 VKYYIDF 403
           +K  I+F
Sbjct: 348 IKTAIEF 354

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 Length = 198

 Score = 55.3 bits (134), Expect = 3e-09
 Identities = 40/211 (18%), Positives = 72/211 (34%), Gaps = 26/211 (12%)

Query: 177 DVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARH 236
           D+++ +P  +A  E +       TA+  L +   LSPG+ V+ + A    G   + IA+ 
Sbjct: 2   DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKM 61

Query: 237 WGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLA--------- 287
            G +      +     K +  L  LG +YV         SR        L          
Sbjct: 62  IGARIYTTAGSD---AK-REMLSRLGVEYVGD-------SRSVDFADEILELTDGYGVDV 110

Query: 288 -LNCVGGNSATNLLRTLVSKGVMVTYGGMS-REPVQIPTSAFIFKDITLRGHWMTRWQKE 345
            LN + G +    ++ L   G  +  G         +  +A   K  +     +    K 
Sbjct: 111 VLNSLAGEAIQRGVQILAPGGRFIELGKKDVYADASLGLAALA-KSASFSVVDLDLNLKL 169

Query: 346 NKESAERKSMMNELTEMMRTGKLAA-PAHKF 375
                 +  ++  + + +  GKL   P   F
Sbjct: 170 QPARYRQ--LLQHILQHVADGKLEVLPVTAF 198

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 5e-09
 Identities = 65/442 (14%), Positives = 125/442 (28%), Gaps = 136/442 (30%)

Query: 15  YQAGSLRFISSKKLVFHEFGEPAKV---VNVVEEELLKVMSTELCTYI------------ 59
           ++ G  ++   K ++   F +          V++    ++S E   +I            
Sbjct: 9   FETGEHQY-QYKDILSV-FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 60  ---SLLDTSARG------------FSYLANKLVYNQHGTPLRVVTVE---NETLNSVQKH 101
              +LL                  + +L + +   Q    +         +   N  Q  
Sbjct: 67  LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ-- 124

Query: 102 EVVVKMLVAPVNPADINTIQ-GVYPIKPTLP-AVPGFEGVGEVVEVGSDVSSLAVGDHVI 159
            V  K  V          ++  +  ++P     + G  G G+         S  V    +
Sbjct: 125 -VFAKYNV--SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK-M 180

Query: 160 PDTQHLGTWRNYGKFN--HDVLMKVPK-----DIALTEISGITSNP-------CTAYRML 205
                   W N    N    VL  + K     D   T  S  +SN            R L
Sbjct: 181 DFKIF---WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237

Query: 206 ---KDY-NSLSPGDVVIQNGANSACGQNVIQIARHW-----GLKTINIVRNRDDIDKLKS 256
              K Y N L    +V+ N          +Q A+ W       K +   R +   D L +
Sbjct: 238 LKSKPYENCL----LVLLN----------VQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283

Query: 257 ----YLKSLGADYVFTEEELRNI------SRDASIPK------PKLALNCVGG------- 293
               ++         T +E++++       R   +P+      P   L+ +         
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP-RRLSIIAESIRDGLA 342

Query: 294 ------NSATNLLRTLVSKGVMV--------TYGGMS--REPVQIPTSAFIFKDITLRGH 337
                 +   + L T++   + V         +  +S       IPT         L   
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI-------LLSLI 395

Query: 338 WMTRWQKENKESAERKSMMNEL 359
           W       +   ++   ++N+L
Sbjct: 396 W------FDVIKSDVMVVVNKL 411

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 61/404 (15%), Positives = 120/404 (29%), Gaps = 109/404 (26%)

Query: 44  EEELLKVMSTELCT-----YISLLDTSARGF-------SYLANKLVYNQHGTPLRVVTVE 91
            E +L+++   L       + S  D S+          + L   L    +   L V    
Sbjct: 195 PETVLEMLQK-LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV---- 249

Query: 92  NETLNSVQKHEVV------VKMLVAPVNPADINTIQGVYPIKPTL-PAVPGFEGVGEVVE 144
              L +VQ  +         K+L+        + +        +L           EV  
Sbjct: 250 ---LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT-PDEVKS 305

Query: 145 -----VGSDVSSL---AVGDH-----VIPDT--QHLGTWRNYGKFNHDVLMKVPKDIALT 189
                +      L    +  +     +I ++    L TW N+   N D          LT
Sbjct: 306 LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD---------KLT 356

Query: 190 EISGITSNPCTAYRMLKDYNSLS--PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN 247
            I   + N        K ++ LS  P    I           ++ +   W     + V  
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP--------TILLSLI--WFDVIKSDV-- 404

Query: 248 RDDIDKL--KSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVS 305
              ++KL   S ++    +   +   + +I  +  +                 L R++V 
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTIS---IPSIYLELKVKLENEY----------ALHRSIVD 451

Query: 306 KGVMVTYGGM----SREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTE 361
                 Y       S + +      + +  I   GH +     +N E  ER ++   +  
Sbjct: 452 H-----YNIPKTFDSDDLIPPYLDQYFYSHI---GHHL-----KNIEHPERMTLFRMVFL 498

Query: 362 MMR--TGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF 403
             R    K+   +    T  N   +++NT+       +K+Y  +
Sbjct: 499 DFRFLEQKIRHDS----TAWNASGSILNTL-----QQLKFYKPY 533

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 59/366 (16%), Positives = 102/366 (27%), Gaps = 93/366 (25%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQG-VYPIKPTLPAVP 134
                 G  +  +  E          + +V+ L      +DI+T+       +     + 
Sbjct: 4   FAMLSIGK-VGWIEKEKPAPGP---FDAIVRPLAVAPCTSDIHTVFEGAIGERH--NMIL 57

Query: 135 GFEGVGEVVEVGSDVSSLAVGDHV-----IPD--------------TQHLGTWRNYGKFN 175
           G E VGEVVEVGS+V     GD V      PD                 L  W+     +
Sbjct: 58  GHEAVGEVVEVGSEVKDFKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKD 117

Query: 176 H-----------DV-LMKVPKDI----ALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQ 219
                       D+ L  +PK+I    A+  I  + +   T +    +  ++  GD V  
Sbjct: 118 GVFGEFFHVNDADMNLAHLPKEIPLEAAVM-IPDMMT---TGF-HGAELANIKLGDTVCV 172

Query: 220 NGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL---KSLGADYVFTEEELRNIS 276
            G     G   +  A H G   I        +   K         GA  +   +    + 
Sbjct: 173 IGI-GPVGLMSVAGANHLGAGRI-FA-----VGSRKHCCDIALEYGATDIINYKNGDIVE 225

Query: 277 R----------DASIPKPKLALNCVGGNSATNLLRTLVSKGVMVT----YGGMSREPVQI 322
           +          D         +   G          ++  G  +      G      +  
Sbjct: 226 QILKATDGKGVDK-------VVIAGGDVHTFAQAVKMIKPGSDIGNVNYLGEGDNIDIPR 278

Query: 323 PTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPA----HKFVTL 378
                      + G               R   M  L +++   ++  P+    H F   
Sbjct: 279 SEWGVGMGHKHIHGGLC---------PGGRLR-MERLIDLVFYKRV-DPSKLVTHVFRGF 327

Query: 379 KNFQEA 384
            N ++A
Sbjct: 328 DNIEKA 333

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score = 53.0 bits (128), Expect = 6e-08
 Identities = 51/299 (17%), Positives = 82/299 (27%), Gaps = 92/299 (30%)

Query: 98  VQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDH 157
              ++V +++    V  +D++ ++  +      P VPG E VG VV VG  V   A GD 
Sbjct: 45  PGPNDVKIEIAYCGVCHSDLHQVRSEWA-GTVYPCVPGHEIVGRVVAVGDQVEKYAPGDL 103

Query: 158 V-----------------------------IPDTQHLGTWRNYGKF------NHDVLMKV 182
           V                                          G +      +   ++++
Sbjct: 104 VGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRI 163

Query: 183 PKDIALTEIS------GITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVI----- 231
                           GI     T Y  L+ +    PG  V            V+     
Sbjct: 164 RHPQEQLAAVAPLLCAGI-----TTYSPLRHWQ-AGPGKKV-----------GVVGIGGL 206

Query: 232 -----QIARHWGLKTINIVRN---RDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPK 283
                ++A   G   +    +   R+         K+LGAD V         SR+A    
Sbjct: 207 GHMGIKLAHAMGAHVVAFTTSEAKREAA-------KALGADEVV-------NSRNADEMA 252

Query: 284 PK-----LALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRG 336
                    LN V    +  +    L   G M   G  +           I K   + G
Sbjct: 253 AHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAG 311

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 49/295 (16%), Positives = 96/295 (32%), Gaps = 79/295 (26%)

Query: 94  TLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLA 153
           + ++V   +V++ +L A +  +DI++    +  +   P +PG E  G + EVG  V    
Sbjct: 23  SRHAVGPRDVLIDILYAGICHSDIHSAYSEWK-EGIYPMIPGHEIAGIIKEVGKGVKKFK 81

Query: 154 VGDHV-------------------------------IPDTQHLGTWRNYGKF------NH 176
           +GD V                                 D+ H     + G +      + 
Sbjct: 82  IGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYDCLDSFHDNE-PHMGGYSNNIVVDE 140

Query: 177 DVLMKVPKDIALTEIS-----GITSNPCTAYRMLKDYNSLSPGD---VVIQNGANSACGQ 228
           + ++ V K+  L +++     GI     T Y  LK    ++ G    V    G     G 
Sbjct: 141 NYVISVDKNAPLEKVAPLLCAGI-----TTYSPLKFSK-VTKGTKVGVAGFGG----LGS 190

Query: 229 NVIQIARHWGLKTINIVRN---RDDIDKLKSYLKSLGAD-YVFTEEELRNISRDASIPKP 284
             ++ A   G +     RN   + D         S+G   +    ++ +    D      
Sbjct: 191 MAVKYAVAMGAEVSVFARNEHKKQDA-------LSMGVKHFYTDPKQCKE-ELD------ 236

Query: 285 KLALNCVGGNSATN-LLRTLVSKGVMVTYG--GMSREPVQIPTSAFIFKDITLRG 336
              ++ +  +      L+ L   G +   G   +   PV          +  + G
Sbjct: 237 -FIISTIPTHYDLKDYLKLLTYNGDLALVGLPPVEVAPVLSVFDFIHLGNRKVYG 290

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 70/380 (18%), Positives = 119/380 (31%), Gaps = 118/380 (31%)

Query: 86  RVVTVENETL---NSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEV 142
           RV TV    L   N   +H V++K++   +  +D +  +G + +      V G E  GEV
Sbjct: 15  RVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFIVPK--GHVLGHEITGEV 72

Query: 143 VEVGSDVSSLAVGDHV-IP-------------------DTQHLGTWRNYGKFNHDV---- 178
           VE GSDV  + +GD V +P                   +   +    + G F  D+    
Sbjct: 73  VEKGSDVELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDLKGWS 132

Query: 179 ---------------LMKVPKDIA-------LTEISGITSNPCTAYRMLKDYNSLSPGDV 216
                          L+K             LT IS I     T +        + PG  
Sbjct: 133 GGQAEYVLVPYADYMLLKFGDKEQAMEKIKDLTLISDIL---PTGF-HGCVSAGVKPGSH 188

Query: 217 VIQNGANSACGQ------------NVI---------QIARHWGLKTINIVRNRDDIDKLK 255
           V   GA    G+             VI         ++    G +TI++  +    D++ 
Sbjct: 189 VYIAGA-GPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETIDLRNSAPLRDQID 247

Query: 256 SYLKSLGADYVFTE---EELRNISRDASIPKPKLALNCVGGNSATNLLR---TLVSKGVM 309
             L     D    +    E   +  +A+   P  AL     NS  +++R    +   G+ 
Sbjct: 248 QILGKPEVDCGV-DAVGFEAHGLGDEANTETPNGAL-----NSLFDVVRAGGAIGIPGI- 300

Query: 310 VTYGGMSREP---------VQIPTSAFIFKDITLRG---HWMTRWQKENKESAERKSMMN 357
             Y G   +P         + +       K I +       +T +               
Sbjct: 301 --YVGSDPDPVNKDAGSGRLHLDFGKMWTKSIRIMTGMAP-VTNY-------------NR 344

Query: 358 ELTEMMRTGKLAAPAHKFVT 377
            LTE +   ++   +     
Sbjct: 345 HLTEAILWDQMPYLSKVMNI 364

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 9/89 (10%)

Query: 76  LVYNQHGT-PLRVVTVEN----ETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTL 130
           +VY   G+  + V  ++     +      +H V++K++   +  +D + ++G    +   
Sbjct: 6   VVY--LGSGKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTAQV-- 61

Query: 131 PAVPGFEGVGEVVEVGSDVSSLAVGDHVI 159
             V G E  GEV+E G DV +L +GD V 
Sbjct: 62  GLVLGHEITGEVIEKGRDVENLQIGDLVS 90

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 12/49 (24%)

Query: 116 DINTIQG-----VYPIKPTLPAVPGFEGVGEVVEVGSDVSS-LAVGDHV 158
           DI+   G       P+      V G E VG+VV++G   +S L VG  V
Sbjct: 49  DIHCAAGHWGNMKMPL------VVGHEIVGKVVKLGPKSNSGLKVGQRV 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	405
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	100.0
4eye_A	342	Probable oxidoreductase; structural genomics, niai	100.0
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	100.0
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	100.0
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	100.0
3gms_A	340	Putative NADPH:quinone reductase; structural genom	100.0
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	100.0
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	100.0
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	100.0
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	100.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	100.0
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	100.0
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	100.0
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	100.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	100.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	100.0
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	100.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	100.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	100.0
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	100.0
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	100.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	100.0
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	100.0
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	100.0
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	100.0
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	100.0
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	100.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	100.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	100.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	100.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	100.0
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	100.0
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	100.0
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	100.0
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	100.0
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	100.0
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	100.0
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	100.0
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	100.0
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	100.0
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	100.0
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	100.0
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	100.0
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	100.0
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.93
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.95
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.9
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.7
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.69
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.63
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.39
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.33
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.12
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.09
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.07
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	97.89
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	97.8
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.73
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	97.73
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	97.7
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.68
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	97.66
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	97.66
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	97.64
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	97.62
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	97.61
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	97.61
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	97.61
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.6
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	97.59
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	97.59
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	97.58
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.58
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	97.58
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	97.56
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	97.56
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.56
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	97.56
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	97.55
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	97.55
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	97.55
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	97.54
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.54
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	97.54
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.52
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	97.5
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	97.49
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	97.46
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	97.46
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.46
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	97.46
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	97.45
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	97.45
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	97.44
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	97.44
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	97.44
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	97.43
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	97.43
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	97.42
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	97.42
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	97.42
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.4
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	97.4
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	97.4
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	97.39
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	97.39
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	97.39
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	97.38
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	97.38
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	97.38
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	97.38
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	97.38
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.38
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	97.37
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	97.37
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	97.36
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	97.35
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	97.35
3imf_A	257	Short chain dehydrogenase; structural genomics, in	97.34
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	97.34
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	97.34
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	97.34
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	97.33
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	97.33
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	97.33
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	97.32
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	97.32
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	97.32
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	97.3
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	97.3
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.3
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.29
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	97.29
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	97.29
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	97.29
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	97.28
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	97.28
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	97.28
3rih_A	293	Short chain dehydrogenase or reductase; structural	97.28
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	97.27
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	97.26
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.26
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	97.26
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	97.26
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	97.26
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	97.25
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	97.25
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	97.24
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	97.24
3cxt_A	291	Dehydrogenase with different specificities; rossma	97.24
1spx_A	278	Short-chain reductase family member (5L265); paral	97.24
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	97.23
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	97.23
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.23
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	97.23
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	97.23
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	97.21
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	97.21
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	97.2
1xq1_A	266	Putative tropinone reducatse; structural genomics,	97.2
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.2
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	97.2
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	97.2
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	97.2
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	97.2
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.19
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	97.19
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	97.18
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	97.17
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	97.17
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	97.16
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	97.16
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	97.16
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	97.16
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	97.16
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	97.15
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	97.15
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	97.14
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	97.14
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	97.14
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	97.14
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	97.13
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	97.13
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	97.13
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	97.12
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	97.12
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	97.12
1xhl_A	297	Short-chain dehydrogenase/reductase family member	97.11
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	97.11
1xkq_A	280	Short-chain reductase family member (5D234); parra	97.11
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	97.09
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.09
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	97.09
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.08
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.08
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	97.08
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	97.08
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	97.08
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	97.06
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	97.06
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	97.05
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	97.05
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	97.05
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	97.04
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	97.04
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	97.03
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	97.03
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	97.03
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	97.03
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.02
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.02
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	97.01
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	97.01
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	97.01
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	97.01
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	97.0
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.0
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	97.0
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	97.0
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.0
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	96.98
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.96
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	96.96
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	96.96
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	96.96
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	96.96
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	96.95
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	96.94
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	96.94
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	96.94
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	96.94
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	96.94
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	96.92
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	96.91
4dqx_A	277	Probable oxidoreductase protein; structural genomi	96.91
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	96.91
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	96.9
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	96.9
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	96.9
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	96.89
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	96.88
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	96.88
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	96.87
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	96.87
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	96.87
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	96.86
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	96.86
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	96.85
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	96.85
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	96.85
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	96.84
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	96.84
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	96.83
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	96.83
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	96.83
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	96.83
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.82
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	96.8
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	96.79
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.78
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	96.78
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.78
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	96.78
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	96.78
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	96.77
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.77
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	96.76
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	96.76
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	96.74
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	96.74
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.73
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	96.73
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	96.73
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	96.72
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	96.71
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	96.71
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	96.71
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	96.71
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	96.7
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	96.69
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	96.69
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	96.68
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	96.66
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	96.64
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.64
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	96.64
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	96.63
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	96.62
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	96.62
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	96.61
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	96.59
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	96.58
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	96.57
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	96.57
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	96.56
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	96.55
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	96.55
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	96.55
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	96.54
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	96.53
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	96.53
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	96.51
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	96.51
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	96.49
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.48
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	96.48
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	96.47
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	96.47
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	96.46
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	96.45
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	96.45
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	96.44
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	96.43
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	96.42
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	96.42
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	96.42
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	96.41
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	96.41
1xq6_A	253	Unknown protein; structural genomics, protein stru	96.37
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	96.37
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	96.37
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	96.36
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	96.36
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	96.33
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	96.33
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	96.31
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	96.28
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	96.24
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	96.24
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	96.23
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	96.2
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	96.2
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	96.19
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	96.19
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	96.18
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	96.18
3l07_A	285	Bifunctional protein fold; structural genomics, ID	96.18
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	96.17
4ggo_A	401	Trans-2-enoyl-COA reductase; rossmann fold, oxidor	96.16
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	96.15
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	96.14
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	96.14
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	96.14
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	96.13
4e4y_A	244	Short chain dehydrogenase family protein; structur	96.12
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	96.12
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	96.12
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	96.1
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	96.1
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	96.1
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	96.1
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	96.09
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	96.07
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	96.06
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	96.03
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	96.02
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	96.02
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	96.01
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	96.0
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	95.99
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	95.99
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	95.96
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	95.95
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	95.93
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	95.91
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	95.89
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	95.89
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	95.88
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	95.86
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	95.86
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	95.84
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	95.84
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	95.83
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	95.81
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	95.8
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	95.8
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	95.75
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	95.75
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	95.75
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	95.74
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	95.73
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	95.71
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	95.71
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.69
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	95.68
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	95.67
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	95.67
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	95.67
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	95.63
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	95.61
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	95.61
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	95.6
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	95.6
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	95.56
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	95.56
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	95.56
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.55
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	95.55
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	95.53
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	95.52
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	95.52
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	95.47
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	95.47
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	95.45
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	95.44
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	95.42
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	95.42
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	95.42
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	95.39
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	95.39
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	95.35
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.34
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	95.32
3f4k_A	257	Putative methyltransferase; structural genomics, P	95.32
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	95.32
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	95.3
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	95.27
2b25_A	336	Hypothetical protein; structural genomics, methyl	95.27
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	95.23
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	95.23
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	95.21
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	95.2
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	95.18
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	95.18
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	95.18
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	95.16
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	95.15
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	95.14
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	95.13
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	95.1
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.1
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	95.08
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	95.07
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	95.06
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	95.04
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	95.03
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	95.02
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	94.99
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	94.97
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	94.97
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	94.97
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	94.93
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	94.92
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	94.92
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	94.92
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	94.92
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	94.92
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	94.9
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	94.89
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	94.87
4f6c_A	427	AUSA reductase domain protein; thioester reductase	94.83
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	94.83
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	94.83
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	94.83
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	94.82
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	94.79
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	94.78
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	94.76
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	94.76
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	94.76
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	94.75
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	94.73
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	94.71
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	94.7
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	94.69
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	94.66
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	94.65
4had_A	350	Probable oxidoreductase protein; structural genomi	94.57
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	94.52
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	94.5
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	94.5
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	94.47
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	94.41
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	94.41

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=100.00  E-value=1.5e-59  Score=452.45  Aligned_cols=335  Identities=49%  Similarity=0.799  Sum_probs=293.0

Q ss_pred             cCCcccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEE
Q psy2960          66 ARGFSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEV  145 (405)
Q Consensus        66 ~~~~~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~v  145 (405)
                      +..+|.+||++++.++|.+.+.+++++.|.|+|+++||||||.++|||++|++.+.|.++..+.+|.++|||++|+|+++
T Consensus        20 ~~~m~~~mka~~~~~~g~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~v   99 (357)
T 1zsy_A           20 FQSMPARVRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNEGVAQVVAV   99 (357)
T ss_dssp             CCCCCCCEEEEEESSSSCHHHHEEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSEECCSCCEEEEEEE
T ss_pred             hhhCchhhEEEEEecCCCccceEEEeeccCCCCCCCEEEEEEEECCCCHHHhhHhcCCCCCCCCCCccccceEEEEEEEe
Confidence            34578889999999998865558899999999999999999999999999999999987654467999999999999999


Q ss_pred             cCCCCCCCCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcH
Q psy2960         146 GSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSA  225 (405)
Q Consensus       146 G~~v~~~~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~  225 (405)
                      |++|++|++||||++.....|+|+||++++++.++++|+++++++||+++++++|||+++...+++++|++|||+|++|+
T Consensus       100 G~~v~~~~vGdrV~~~~~~~G~~aey~~v~~~~~~~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~  179 (357)
T 1zsy_A          100 GSNVTGLKPGDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSG  179 (357)
T ss_dssp             CTTCCSCCTTCEEEESSSCSCCSBSEEEEEGGGEEEECSSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSH
T ss_pred             CCCCCCCCCCCEEEEcCCCCccceeEEecCHHHcEECCCCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCH
Confidence            99999999999999986557999999999999999999999999999999999999999988889999999999999999


Q ss_pred             HHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhH-HH-HhhhcCCC-CCcEEEECCCchhHHHHHHh
Q psy2960         226 CGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEEL-RN-ISRDASIP-KPKLALNCVGGNSATNLLRT  302 (405)
Q Consensus       226 vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~-~~-i~~~t~g~-g~Dvvld~~g~~~~~~~~~~  302 (405)
                      +|++++|+|+.+|+++++++++.++.+++++.++++|+++++|+++. .+ +.+.+++. ++|+||||+|++....++++
T Consensus       180 vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~~Dvvid~~g~~~~~~~~~~  259 (357)
T 1zsy_A          180 VGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMPQPRLALNCVGGKSSTELLRQ  259 (357)
T ss_dssp             HHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHHHHSGGGGGTTSSSCCCSEEEESSCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEEecCcchHHHHHHHHhCCCCceEEEECCCcHHHHHHHHh
Confidence            99999999999999999999877666677889999999999997653 23 66666543 69999999999888888999


Q ss_pred             cccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHH
Q psy2960         303 LVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQ  382 (405)
Q Consensus       303 l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~  382 (405)
                      ++++|+++.+|.....+..++...++.+++++.|++...+.... .+....+.++++++++++|++++.+.++|++++++
T Consensus       260 l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~-~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~l~~~~  338 (357)
T 1zsy_A          260 LARGGTMVTYGGMAKQPVVASVSLLIFKDLKLRGFWLSQWKKDH-SPDQFKELILTLCDLIRRGQLTAPACSQVPLQDYQ  338 (357)
T ss_dssp             SCTTCEEEECCCCTTCCBCCCHHHHHHSCCEEEECCHHHHHHHS-CHHHHHHHHHHHHHHHHTTSSCCCCEEEEEGGGHH
T ss_pred             hCCCCEEEEEecCCCCCCCCCHHHHHhcCceEEEEEcchhcccC-CHHHHHHHHHHHHHHHHcCCCcCccceEEcHHHHH
Confidence            99999999998655444556666677899999999876543221 12445677899999999999999888999999999


Q ss_pred             HHHHHHhhhcCCCCceEEEEe
Q psy2960         383 EALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       383 ~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      +||+.+.  +++..||+||++
T Consensus       339 ~A~~~~~--~~~~~gKvvl~~  357 (357)
T 1zsy_A          339 SALEASM--KPFISSKQILTM  357 (357)
T ss_dssp             HHHHHHT--SSSCSSEEEEEC
T ss_pred             HHHHHHH--hCCCCCcEEEeC
Confidence            9999998  788889999975

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=5.3e-59  Score=445.83  Aligned_cols=326  Identities=21%  Similarity=0.265  Sum_probs=283.4

Q ss_pred             cCCcccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEE
Q psy2960          66 ARGFSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEV  145 (405)
Q Consensus        66 ~~~~~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~v  145 (405)
                      +..+|.+||++++++++.+ +.+++++.|.|+|++|||||||.++|||++|++.+.|.++....+|.++|||++|+|+++
T Consensus        15 ~~~~p~~MkA~~~~~~g~~-~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~v   93 (342)
T 4eye_A           15 QTQGPGSMKAIQAQSLSGP-EGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFVPGIETAGVVRSA   93 (342)
T ss_dssp             ---CCCEEEEEEECSSSGG-GGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSSSCCCSSBCCCSEEEEEEEEC
T ss_pred             cccCCcceEEEEEecCCCC-ceeEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCccceeEEEEEEEE
Confidence            3457999999999998877 459999999999999999999999999999999999988765678999999999999999


Q ss_pred             cCCCCCCCCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcH
Q psy2960         146 GSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSA  225 (405)
Q Consensus       146 G~~v~~~~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~  225 (405)
                      |++++ |++||||+++ ...|+|+||++++++.++++|+++++++||+++++++|||+++.+.+++++|++|||+|++|+
T Consensus        94 G~~v~-~~vGDrV~~~-~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~  171 (342)
T 4eye_A           94 PEGSG-IKPGDRVMAF-NFIGGYAERVAVAPSNILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGG  171 (342)
T ss_dssp             CTTSS-CCTTCEEEEE-CSSCCSBSEEEECGGGEEECCTTSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTSH
T ss_pred             CCCCC-CCCCCEEEEe-cCCCcceEEEEEcHHHeEECCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCCH
Confidence            99999 9999999998 357999999999999999999999999999999999999999988899999999999999999


Q ss_pred             HHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChh-hHHH-HhhhcCCCCCcEEEECCCchhHHHHHHhc
Q psy2960         226 CGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE-ELRN-ISRDASIPKPKLALNCVGGNSATNLLRTL  303 (405)
Q Consensus       226 vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~-d~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l  303 (405)
                      +|++++|+|+.+|++|+++++++++    ++.++++|++++++++ ++.+ +++.+++.++|+||||+|++.+..+++++
T Consensus       172 iG~~~~~~a~~~Ga~Vi~~~~~~~~----~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~g~~~~~~~~~~l  247 (342)
T 4eye_A          172 IGTAAIQIAKGMGAKVIAVVNRTAA----TEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGGPAFDDAVRTL  247 (342)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESSGGG----HHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESCC--CHHHHHHTE
T ss_pred             HHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECCchhHHHHHHHhh
Confidence            9999999999999999999876544    6788899999998765 4555 88889888999999999999888999999


Q ss_pred             ccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHH
Q psy2960         304 VSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQE  383 (405)
Q Consensus       304 ~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~  383 (405)
                      +++|+++.+|........++...++.+++++.|+++..+....+  +...+.++++.+++++| +++.++++|+++++++
T Consensus       248 ~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~--~~~~~~~~~~~~l~~~g-l~~~i~~~~~l~~~~~  324 (342)
T 4eye_A          248 ASEGRLLVVGFAAGGIPTIKVNRLLLRNASLIGVAWGEFLRTHA--DYLYETQAGLEKLVAEG-MRPPVSARIPLSEGRQ  324 (342)
T ss_dssp             EEEEEEEEC----------CCCCGGGTTCEEEECCHHHHHHHCT--THHHHHHHHHHHHHHTT-CCCCEEEEEEGGGHHH
T ss_pred             cCCCEEEEEEccCCCCCccCHHHHhhcCCEEEEEehhhhhhcCH--HHHHHHHHHHHHHHHcC-CCCCcceEEeHHHHHH
Confidence            99999999996554444566667888999999998876644333  45567899999999999 9999999999999999


Q ss_pred             HHHHHhhhcCCCCceEEEEe
Q psy2960         384 ALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       384 A~~~~~~~~~~~~gKvvl~~  403 (405)
                      ||+.+.  +++..||+||++
T Consensus       325 A~~~~~--~~~~~gKvvl~P  342 (342)
T 4eye_A          325 ALQDFA--DGKVYGKMVLVP  342 (342)
T ss_dssp             HHHHHH--TTCCCSEEEEEC
T ss_pred             HHHHHH--hCCCCceEEEeC
Confidence            999999  899999999974

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=100.00  E-value=5.1e-59  Score=447.85  Aligned_cols=328  Identities=22%  Similarity=0.306  Sum_probs=290.8

Q ss_pred             cCCcccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEE
Q psy2960          66 ARGFSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEV  145 (405)
Q Consensus        66 ~~~~~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~v  145 (405)
                      ...+|.+||+++++++|.+ +.+++++.|.|+|++|||||||.++|||++|++.+.|.++..+.+|.++|||++|+|+++
T Consensus        22 ~~~~p~~MkA~~~~~~g~~-~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~v  100 (353)
T 4dup_A           22 SMSLPQEMRFVDLKSFGGP-DVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPILGLELSGEIVGV  100 (353)
T ss_dssp             -CCCCSSEEEEEESSSSSG-GGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTSSCCCTTSCSSSCCEEEEEEEEE
T ss_pred             cCCCChheeEEEEccCCCc-cceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCccccccEEEEEEE
Confidence            3458999999999999877 569999999999999999999999999999999999988766678999999999999999


Q ss_pred             cCCCCCCCCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcH
Q psy2960         146 GSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSA  225 (405)
Q Consensus       146 G~~v~~~~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~  225 (405)
                      |++|++|++||||+++. ..|+|+||++++++.++++|+++++++||+++++++|||+++.+.+++++|++|||+||+|+
T Consensus       101 G~~v~~~~vGdrV~~~~-~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~  179 (353)
T 4dup_A          101 GPGVSGYAVGDKVCGLA-NGGAYAEYCLLPAGQILPFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSG  179 (353)
T ss_dssp             CTTCCSCCTTCEEEEEC-SSCCSBSEEEEEGGGEEECCTTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSH
T ss_pred             CCCCCCCCCCCEEEEec-CCCceeeEEEEcHHHcEeCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCH
Confidence            99999999999999983 56999999999999999999999999999999999999999988899999999999999999


Q ss_pred             HHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCCCCCcEEEECCCchhHHHHHHh
Q psy2960         226 CGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIPKPKLALNCVGGNSATNLLRT  302 (405)
Q Consensus       226 vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~  302 (405)
                      +|++++|+|+..|++|+++++++    ++++.++++|++.++|+++  +.+ +.+.+ +.++|++|||+|++.+..++++
T Consensus       180 iG~~~~~~a~~~Ga~Vi~~~~~~----~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~-~~g~Dvvid~~g~~~~~~~~~~  254 (353)
T 4dup_A          180 IGTTAIQLARAFGAEVYATAGST----GKCEACERLGAKRGINYRSEDFAAVIKAET-GQGVDIILDMIGAAYFERNIAS  254 (353)
T ss_dssp             HHHHHHHHHHHTTCEEEEEESSH----HHHHHHHHHTCSEEEETTTSCHHHHHHHHH-SSCEEEEEESCCGGGHHHHHHT
T ss_pred             HHHHHHHHHHHcCCEEEEEeCCH----HHHHHHHhcCCCEEEeCCchHHHHHHHHHh-CCCceEEEECCCHHHHHHHHHH
Confidence            99999999999999999887553    4578888999999998654  555 88888 7899999999999988999999


Q ss_pred             cccCCEEEEEeccCCCCcc-cCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhH
Q psy2960         303 LVSKGVMVTYGGMSREPVQ-IPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNF  381 (405)
Q Consensus       303 l~~~G~~v~~g~~~~~~~~-~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~  381 (405)
                      ++++|+++.+|........ ++...++.+++++.|+++..+..... +....+.++++++++++|++++.++++|+++++
T Consensus       255 l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~-~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~  333 (353)
T 4dup_A          255 LAKDGCLSIIAFLGGAVAEKVNLSPIMVKRLTVTGSTMRPRTAEEK-RAIRDDLLSEVWPLLEAGTVAPVIHKVFAFEDV  333 (353)
T ss_dssp             EEEEEEEEECCCTTCSEEEEEECHHHHHTTCEEEECCSTTSCHHHH-HHHHHHHHHHTHHHHHHTSSCCCEEEEEEGGGH
T ss_pred             hccCCEEEEEEecCCCcccCCCHHHHHhcCceEEEEeccccchhhh-HHHHHHHHHHHHHHHHCCCccCCcceEEeHHHH
Confidence            9999999999966544333 66667788999999998766543221 234455688999999999999999999999999


Q ss_pred             HHHHHHHhhhcCCCCceEEEEe
Q psy2960         382 QEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       382 ~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      ++||+.+.  +++..||+||++
T Consensus       334 ~~A~~~l~--~~~~~gKvvl~~  353 (353)
T 4dup_A          334 ADAHRLLE--EGSHVGKVMLTV  353 (353)
T ss_dssp             HHHHHHHH--HTCCSSEEEEEC
T ss_pred             HHHHHHHH--hCCCCceEEEeC
Confidence            99999999  889999999985

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=100.00  E-value=1.6e-58  Score=441.43  Aligned_cols=324  Identities=22%  Similarity=0.285  Sum_probs=291.2

Q ss_pred             CcccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcC
Q psy2960          68 GFSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGS  147 (405)
Q Consensus        68 ~~~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~  147 (405)
                      .+|.+||+++++++|++ +.+++++.|.|+|++|||||||.++|||++|++.+.|.++.  .+|.++|||++|+|+++|+
T Consensus         4 ~~p~~mka~~~~~~g~~-~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~--~~P~i~G~e~~G~V~~vG~   80 (334)
T 3qwb_A            4 TIPEQQKVILIDEIGGY-DVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYPC--EKPYVLGREASGTVVAKGK   80 (334)
T ss_dssp             -CCSEEEEEEESSSSSG-GGEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHHTSSCC--CSSEECCSEEEEEEEEECT
T ss_pred             CCchheEEEEEecCCCC-ceeEEEeccCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCC--CCCCccccceEEEEEEECC
Confidence            47899999999999886 56899999999999999999999999999999999998764  5799999999999999999


Q ss_pred             CCCCCCCCCEEEecCCCCCcccceEeec-ccceEEcCCCCChhh---hccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCC
Q psy2960         148 DVSSLAVGDHVIPDTQHLGTWRNYGKFN-HDVLMKVPKDIALTE---ISGITSNPCTAYRMLKDYNSLSPGDVVIQNGAN  223 (405)
Q Consensus       148 ~v~~~~~GdrV~~~~~~~G~~a~~~~v~-~~~~~~iP~~~s~~~---Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~  223 (405)
                      +|++|++||||+++.  +|+|+||+.++ ++.++++|+++++++   ||++++.++|||+++.+.+++++|++|||+||+
T Consensus        81 ~v~~~~~GdrV~~~~--~G~~aey~~v~~~~~~~~~P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~  158 (334)
T 3qwb_A           81 GVTNFEVGDQVAYIS--NSTFAQYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAA  158 (334)
T ss_dssp             TCCSCCTTCEEEEEC--SSCSBSEEEEETTSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTT
T ss_pred             CCCCCCCCCEEEEee--CCcceEEEEecCcceEEECCCCCCHHHhhhhhhhhhHHHHHHHHHHHhccCCCCCEEEEECCC
Confidence            999999999999883  69999999999 999999999999999   889999999999999988899999999999998


Q ss_pred             cHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCCCCCcEEEECCCchhHHHHH
Q psy2960         224 SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIPKPKLALNCVGGNSATNLL  300 (405)
Q Consensus       224 G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~  300 (405)
                      |++|++++|+|+.+|++|+++++++    ++++.++++|+++++|+++  +.+ +.+.+++.++|+||||+|++.+..++
T Consensus       159 g~iG~~~~~~a~~~Ga~Vi~~~~~~----~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~  234 (334)
T 3qwb_A          159 GGVGLILNQLLKMKGAHTIAVASTD----EKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVGKDTFEISL  234 (334)
T ss_dssp             BHHHHHHHHHHHHTTCEEEEEESSH----HHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEECCGGGGHHHHH
T ss_pred             CHHHHHHHHHHHHCCCEEEEEeCCH----HHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEECCChHHHHHHH
Confidence            9999999999999999999887553    4578889999999998754  555 88888888999999999998888999


Q ss_pred             HhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhh
Q psy2960         301 RTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKN  380 (405)
Q Consensus       301 ~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~  380 (405)
                      ++++++|+++.+|........++...++.|++++.++++..+...   ++...+.++++++++++|++++.++++|++++
T Consensus       235 ~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~  311 (334)
T 3qwb_A          235 AALKRKGVFVSFGNASGLIPPFSITRLSPKNITLVRPQLYGYIAD---PEEWKYYSDEFFGLVNSKKLNIKIYKTYPLRD  311 (334)
T ss_dssp             HHEEEEEEEEECCCTTCCCCCBCGGGGTTTTCEEECCCGGGGSCS---HHHHHHHHHHHHHHHHTTSSCCCEEEEEEGGG
T ss_pred             HHhccCCEEEEEcCCCCCCCCcchhhhhhCceEEEEEEeccccCC---HHHHHHHHHHHHHHHHCCCccCceeeEEcHHH
Confidence            999999999999976554445677778889999999887665432   35667788999999999999999999999999


Q ss_pred             HHHHHHHHhhhcCCCCceEEEEecC
Q psy2960         381 FQEALMNTMSIQGKSGVKYYIDFRQ  405 (405)
Q Consensus       381 ~~~A~~~~~~~~~~~~gKvvl~~~~  405 (405)
                      +++||+.+.  +++..||+||+++|
T Consensus       312 ~~~A~~~~~--~~~~~gKvvi~~~q  334 (334)
T 3qwb_A          312 YRTAAADIE--SRKTVGKLVLEIPQ  334 (334)
T ss_dssp             HHHHHHHHH--TTCCCBEEEEECCC
T ss_pred             HHHHHHHHH--hCCCceEEEEecCC
Confidence            999999999  89999999999986

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=6.7e-58  Score=441.73  Aligned_cols=314  Identities=20%  Similarity=0.250  Sum_probs=281.3

Q ss_pred             cccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCC
Q psy2960          69 FSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSD  148 (405)
Q Consensus        69 ~~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~  148 (405)
                      +|.+||++++++++.  +.+++++.|.|+|++|||||||.++|||++|++++.|.++....+|.++|||++|+|+++|++
T Consensus        24 m~~~mkA~~~~~~~~--~~l~~~e~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~GhE~~G~V~~vG~~  101 (363)
T 3uog_A           24 MSKWMQEWSTETVAP--HDLKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGKS  101 (363)
T ss_dssp             CCSEEEEEEBSCTTT--TCCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCTTCCCCSSBCCCCEEEEEEEEECTT
T ss_pred             CchhhEEEEEccCCC--CCcEEEeeeCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCcCcccceEEEEEEECCC
Confidence            678899999998742  349999999999999999999999999999999999987755578999999999999999999


Q ss_pred             CCCCCCCCEEEecC-----------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHH
Q psy2960         149 VSSLAVGDHVIPDT-----------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRML  205 (405)
Q Consensus       149 v~~~~~GdrV~~~~-----------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al  205 (405)
                      |++|++||||++.+                       ..+|+|+||++++++.++++|+++++++||+++++++|||+++
T Consensus       102 v~~~~vGDrV~~~~~~~c~~g~~~c~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al  181 (363)
T 3uog_A          102 VTRFRPGDRVISTFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLTAWFAL  181 (363)
T ss_dssp             CCSCCTTCEEEECSSTTCCSSSCCSCSSCCCCCCTTTTSCCCCBSEEEEEGGGEEECCTTSCHHHHHTTTTHHHHHHHHH
T ss_pred             CCCCCCCCEEEEeccccccccccccccccccccccCcCCCCcceeEEEechHHeEECCCCCCHHHHhhcccHHHHHHHHH
Confidence            99999999999862                       1259999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChh--hHHH-HhhhcCCC
Q psy2960         206 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIP  282 (405)
Q Consensus       206 ~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~--d~~~-i~~~t~g~  282 (405)
                      .+.+++++|++|||+| +|++|++++|+|+.+|++|+++++++    ++++.++++|+++++|.+  ++.+ +++.+++.
T Consensus       182 ~~~~~~~~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~~~----~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~  256 (363)
T 3uog_A          182 VEKGHLRAGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSSSR----EKLDRAFALGADHGINRLEEDWVERVYALTGDR  256 (363)
T ss_dssp             TTTTCCCTTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTC
T ss_pred             HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEecCc----hhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCC
Confidence            8889999999999999 59999999999999999999887553    457888999999999853  4666 88899888


Q ss_pred             CCcEEEECCCchhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHH
Q psy2960         283 KPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEM  362 (405)
Q Consensus       283 g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (405)
                      ++|+||||+|++.+..++++++++|+++.+|........++...++.+++++.|++...           .+.+++++++
T Consensus       257 g~D~vid~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~-----------~~~~~~~~~l  325 (363)
T 3uog_A          257 GADHILEIAGGAGLGQSLKAVAPDGRISVIGVLEGFEVSGPVGPLLLKSPVVQGISVGH-----------RRALEDLVGA  325 (363)
T ss_dssp             CEEEEEEETTSSCHHHHHHHEEEEEEEEEECCCSSCEECCBTTHHHHTCCEEEECCCCC-----------HHHHHHHHHH
T ss_pred             CceEEEECCChHHHHHHHHHhhcCCEEEEEecCCCcccCcCHHHHHhCCcEEEEEecCC-----------HHHHHHHHHH
Confidence            99999999999888999999999999999997665445667777888999999987653           3558889999


Q ss_pred             HHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         363 MRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       363 ~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      +++|++++.++++|+++++++||+.+.  +++ .||+||++
T Consensus       326 ~~~g~l~~~i~~~~~l~~~~~A~~~~~--~~~-~gKvvi~~  363 (363)
T 3uog_A          326 VDRLGLKPVIDMRYKFTEVPEALAHLD--RGP-FGKVVIEF  363 (363)
T ss_dssp             HHHHTCCCCEEEEEEGGGHHHHHHTGG--GCC-SBEEEEEC
T ss_pred             HHcCCCccceeeEEcHHHHHHHHHHHH--cCC-CccEEEeC
Confidence            999999999999999999999999999  788 99999985

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=100.00  E-value=9.6e-58  Score=441.15  Aligned_cols=330  Identities=41%  Similarity=0.640  Sum_probs=286.1

Q ss_pred             ccceeEEEEccCCCCccceEeeeecCCCCC--CCeEEEEEEEeecChhhhhhhcccCCCCCCCC---------CCCccce
Q psy2960          70 SYLANKLVYNQHGTPLRVVTVENETLNSVQ--KHEVVVKMLVAPVNPADINTIQGVYPIKPTLP---------AVPGFEG  138 (405)
Q Consensus        70 ~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~--~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p---------~~lG~E~  138 (405)
                      |++||+++++++|.+.+.+++++.|.|+|+  +|||||||.++|||++|++.+.|.++....+|         .++|||+
T Consensus         1 ~~~mka~~~~~~g~~~~~l~~~~~~~P~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~~~~~~~p~~i~G~E~   80 (364)
T 1gu7_A            1 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEG   80 (364)
T ss_dssp             CEEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCC
T ss_pred             CceEEEEEeccCCCchheeEEeeccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCCCCCCccccccCcccccCcee
Confidence            578999999999875445888999998877  99999999999999999999999776434567         8999999


Q ss_pred             EEEEEEEcCCCCCCCCCCEEEecCCCCCcccceEeecccceEEcCC-----------CCChhhhccCCCcHHHHHHHHHh
Q psy2960         139 VGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPK-----------DIALTEISGITSNPCTAYRMLKD  207 (405)
Q Consensus       139 ~G~V~~vG~~v~~~~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~-----------~~s~~~Aa~~~~~~~ta~~al~~  207 (405)
                      +|+|+++|++|++|++||||++.....|+|+||++++++.++++|+           ++++++||+++++++|||+++.+
T Consensus        81 ~G~V~~vG~~v~~~~vGdrV~~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~~~ta~~~l~~  160 (364)
T 1gu7_A           81 LFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTH  160 (364)
T ss_dssp             EEEEEEECTTCCSCCTTCEEEESSSCCCCSBSEEEEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTHHHHHHHHHHS
T ss_pred             EEEEEEeCCCCCcCCCCCEEEecCCCCCcchheEecCHHHeEEcCCccccccccccCCCCHHHHhhccccHHHHHHHHHH
Confidence            9999999999999999999998865679999999999999999998           89999999999999999999988


Q ss_pred             hcCCCCC-CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChh-----hHHH-Hhhhc-
Q psy2960         208 YNSLSPG-DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE-----ELRN-ISRDA-  279 (405)
Q Consensus       208 ~~~~~~g-~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~-----d~~~-i~~~t-  279 (405)
                      .+++++| ++|||+|++|++|++++|+|+.+|+++++++++.++.+++++.++++|+++++|++     ++.+ +++.| 
T Consensus       161 ~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~  240 (364)
T 1gu7_A          161 YVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIK  240 (364)
T ss_dssp             SSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHH
T ss_pred             hhccCCCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhh
Confidence            7899999 99999999999999999999999999999987765534556777899999999875     3445 77777 


Q ss_pred             -CCCCCcEEEECCCchhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHH
Q psy2960         280 -SIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNE  358 (405)
Q Consensus       280 -~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~  358 (405)
                       ++.++|+||||+|++....++++++++|+++.+|........++...++.+++++.|++...+....  +....+.+++
T Consensus       241 ~~~~g~Dvvid~~G~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~  318 (364)
T 1gu7_A          241 QSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNN--KELKTSTLNQ  318 (364)
T ss_dssp             HHTCCEEEEEESSCHHHHHHHHHTSCTTCEEEECCCCSSCCEEECHHHHHHSCCEEEECCHHHHHTTC--HHHHHHHHHH
T ss_pred             ccCCCceEEEECCCchhHHHHHHHhccCCEEEEecCCCCCCcccCHHHHhhcCcEEEEEchhHhcccC--HHHHHHHHHH
Confidence             6779999999999988888899999999999999655444455666677899999998876544332  2445677999


Q ss_pred             HHHHHHcCcccCCcceeeehh---hHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         359 LTEMMRTGKLAAPAHKFVTLK---NFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       359 ~~~~~~~g~l~~~~~~~~~~~---~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      +++++++|++++.+..+|+++   ++++||+.+.  +++..||+||++
T Consensus       319 ~~~l~~~g~l~~~~~~~~~~~~l~~~~~A~~~~~--~~~~~gKvvv~~  364 (364)
T 1gu7_A          319 IIAWYEEGKLTDAKSIETLYDGTKPLHELYQDGV--ANSKDGKQLITY  364 (364)
T ss_dssp             HHHHHHHTCCCCCCCEEEECCSSSCHHHHHHHHH--HTGGGSCEEEEC
T ss_pred             HHHHHHcCCcccccceEEecCchhhHHHHHHHHH--hCCCCceEEEeC
Confidence            999999999998877888775   9999999998  788899999975

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=100.00  E-value=2e-57  Score=434.80  Aligned_cols=326  Identities=25%  Similarity=0.417  Sum_probs=282.7

Q ss_pred             cccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCC
Q psy2960          69 FSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSD  148 (405)
Q Consensus        69 ~~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~  148 (405)
                      |+++||+++++++|+|.+.+++++.|.|+|++|||||||.++|||++|++.+.|.++....+|.++|||++|+|+++|++
T Consensus         1 M~~~mka~~~~~~g~p~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~   80 (340)
T 3gms_A            1 MSLHGKLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVGAF   80 (340)
T ss_dssp             -CCEEEEEEESSCSCHHHHEEEEEEECCCCCTTEEEEEEEEEECCHHHHGGGGTTTTTTSCSSBCCCSCCEEEEEEECTT
T ss_pred             CCcccEEEEEecCCCchheEEEEecCCCCCCCCEEEEEEEEecCCHHHHHHhcCCCCCCCCCCCcCCcceEEEEEEeCCC
Confidence            45689999999999876679999999999999999999999999999999999987765678999999999999999999


Q ss_pred             CCCCCCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHH
Q psy2960         149 VSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQ  228 (405)
Q Consensus       149 v~~~~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~  228 (405)
                      |++|++||||+++ ..+|+|+||++++++.++++|+++++++||++++.++|||+++.+.+++++|++|||+|++|++|+
T Consensus        81 v~~~~vGdrV~~~-~~~G~~aey~~v~~~~~~~vP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~  159 (340)
T 3gms_A           81 VSRELIGKRVLPL-RGEGTWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGH  159 (340)
T ss_dssp             SCGGGTTCEEEEC-SSSCSSBSEEEEEGGGEEECCTTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHH
T ss_pred             CCCCCCCCEEEec-CCCccceeEEEcCHHHeEECCCCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCccHHHH
Confidence            9999999999988 457999999999999999999999999999999999999999988899999999999999889999


Q ss_pred             HHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhccc
Q psy2960         229 NVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVS  305 (405)
Q Consensus       229 ~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~  305 (405)
                      +++|+|+.+|++|+++++++++    ++.++++|+++++|+++  +.+ +.+.|++.++|+||||+|++....+++++++
T Consensus       160 ~~~~~a~~~Ga~Vi~~~~~~~~----~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~~~~~~~~~~l~~  235 (340)
T 3gms_A          160 LFAQLSQILNFRLIAVTRNNKH----TEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIGGPDGNELAFSLRP  235 (340)
T ss_dssp             HHHHHHHHHTCEEEEEESSSTT----HHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCHHHHHHHHHTEEE
T ss_pred             HHHHHHHHcCCEEEEEeCCHHH----HHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECCCChhHHHHHHHhcC
Confidence            9999999999999999877654    67788999999998754  556 8889988899999999999988888899999


Q ss_pred             CCEEEEEeccCCCCcccCccccc-ccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccC-CcceeeehhhHHH
Q psy2960         306 KGVMVTYGGMSREPVQIPTSAFI-FKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA-PAHKFVTLKNFQE  383 (405)
Q Consensus       306 ~G~~v~~g~~~~~~~~~~~~~~~-~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~-~~~~~~~~~~~~~  383 (405)
                      +|+++.+|......  ++...+. ..++++..+++..+.... .+....+.++++++++++|++++ .++++|+++++++
T Consensus       236 ~G~iv~~G~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~g~l~~~~i~~~~~l~~~~~  312 (340)
T 3gms_A          236 NGHFLTIGLLSGIQ--VNWAEIVTKAKVHANIFHLRHWNDEV-SPYKWQETFRHLIRLVENEQLRFMKVHSTYELADVKA  312 (340)
T ss_dssp             EEEEEECCCTTSCC--CCHHHHHHTSCCEEEECCHHHHHHHS-CHHHHHHHHHHHHHHHHTTSSCCCCEEEEEEGGGHHH
T ss_pred             CCEEEEEeecCCCC--CCHHHhhhcccceEEEEEehhhhhhc-CHHHHHHHHHHHHHHHHcCCCccccccEEEeHHHHHH
Confidence            99999999654432  2222222 256666666654443211 12455778999999999999998 4789999999999


Q ss_pred             HHHHHhhhcCCCC-ceEEEEec
Q psy2960         384 ALMNTMSIQGKSG-VKYYIDFR  404 (405)
Q Consensus       384 A~~~~~~~~~~~~-gKvvl~~~  404 (405)
                      ||+.+.  ++++. ||+||++.
T Consensus       313 A~~~~~--~~~~~~GKvvl~~~  332 (340)
T 3gms_A          313 AVDVVQ--SAEKTKGKVFLTSY  332 (340)
T ss_dssp             HHHHHH--CTTCCSSEEEEECC
T ss_pred             HHHHHH--hcCCCCCeEEEEEe
Confidence            999999  78754 99999985

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=100.00  E-value=1.7e-57  Score=432.56  Aligned_cols=320  Identities=21%  Similarity=0.303  Sum_probs=284.9

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||+++++++|.+ +.+++++.|.|+|++|||||||.++|||++|++++.|.++. +.+|.++|||++|+|+++|++|++|
T Consensus         2 MkA~~~~~~g~~-~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~v~G~e~~G~V~~vG~~v~~~   79 (325)
T 3jyn_A            2 AKRIQFSTVGGP-EVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPA-PFLPSGLGAEGAGVVEAVGDEVTRF   79 (325)
T ss_dssp             EEEEEBSSCSSG-GGCEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCC-SSSSBCCCCCEEEEEEEECTTCCSC
T ss_pred             cEEEEEecCCCc-ceeEEeecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCC-CCCCCCCCceeEEEEEEECCCCCCC
Confidence            999999999987 56899999999999999999999999999999999998775 4689999999999999999999999


Q ss_pred             CCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHH
Q psy2960         153 AVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQ  232 (405)
Q Consensus       153 ~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiq  232 (405)
                      ++||||++.....|+|+||+.++++.++++|+++++++||++++.++|||+++.+.+++++|++|||+|++|++|++++|
T Consensus        80 ~~GdrV~~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~  159 (325)
T 3jyn_A           80 KVGDRVAYGTGPLGAYSEVHVLPEANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQ  159 (325)
T ss_dssp             CTTCEEEESSSSSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHH
T ss_pred             CCCCEEEEecCCCccccceEEecHHHeEECCCCCCHHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHH
Confidence            99999998865679999999999999999999999999999999999999999988999999999999998999999999


Q ss_pred             HHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEE
Q psy2960         233 IARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVM  309 (405)
Q Consensus       233 la~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~  309 (405)
                      +|+.+|++|+++++++    ++++.++++|+++++|+++  +.+ +.+.+++.++|+||||+|++.+..++++++++|++
T Consensus       160 ~a~~~Ga~Vi~~~~~~----~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~~~~~~~~~~l~~~G~i  235 (325)
T 3jyn_A          160 WAKALGAKLIGTVSSP----EKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGVGQDTWLTSLDSVAPRGLV  235 (325)
T ss_dssp             HHHHHTCEEEEEESSH----HHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEESSCGGGHHHHHTTEEEEEEE
T ss_pred             HHHHCCCEEEEEeCCH----HHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCceEEEECCChHHHHHHHHHhcCCCEE
Confidence            9999999999987553    4578888999999998754  555 88899889999999999998888999999999999


Q ss_pred             EEEeccCCCCcccCccccccc-CeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHH
Q psy2960         310 VTYGGMSREPVQIPTSAFIFK-DITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNT  388 (405)
Q Consensus       310 v~~g~~~~~~~~~~~~~~~~k-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~  388 (405)
                      +.+|........++...++.+ ++++.+..+..+..   .++...+.++++++++++|++++.++++|+++++++||+.+
T Consensus       236 v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~  312 (325)
T 3jyn_A          236 VSFGNASGPVSGVNLGILAQKDSVYVTRPTLGSYAN---NAQNLQTMADELFDMLASGKLKVDGIEQYALKDAAKAQIEL  312 (325)
T ss_dssp             EECCCTTCCCCSCCTHHHHHTTSCEEECCCHHHHSC---STTHHHHHHHHHHHHHHTTSSCCCCCEEEEGGGHHHHHHHH
T ss_pred             EEEecCCCCCCCCCHHHHhhcCcEEEEeeeeeeecC---CHHHHHHHHHHHHHHHHCCCeeCccccEEcHHHHHHHHHHH
Confidence            999976544335566666666 67777766555432   12566778899999999999999999999999999999999


Q ss_pred             hhhcCCCCceEEEEe
Q psy2960         389 MSIQGKSGVKYYIDF  403 (405)
Q Consensus       389 ~~~~~~~~gKvvl~~  403 (405)
                      .  +++..||+||++
T Consensus       313 ~--~~~~~Gkvvl~p  325 (325)
T 3jyn_A          313 S--ARRTTGSTILIP  325 (325)
T ss_dssp             H--TTCCCSCEEEEC
T ss_pred             H--cCCCCceEEEeC
Confidence            9  899999999974

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=100.00  E-value=5.2e-57  Score=434.02  Aligned_cols=331  Identities=22%  Similarity=0.294  Sum_probs=280.7

Q ss_pred             cCCcccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEE
Q psy2960          66 ARGFSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEV  145 (405)
Q Consensus        66 ~~~~~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~v  145 (405)
                      ...+|.+||+++++++|.+ +.+++++.|.|+|+++||||||.++|||++|++.+.|.++..+.+|.++|||++|+|+++
T Consensus        16 ~~~~~~~Mka~~~~~~g~~-~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~E~~G~V~~v   94 (354)
T 2j8z_A           16 ENLYFQSMLAVHFDKPGGP-ENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNILGLEASGHVAEL   94 (354)
T ss_dssp             -----CEEEEEEESSCSSG-GGEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCCTTSCSSSCSEEEEEEEEE
T ss_pred             cccchhheeEEEEccCCCc-cceEEeecCCCCCCCCeEEEEEEEeecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEE
Confidence            3357889999999999876 458999999999999999999999999999999999987654467999999999999999


Q ss_pred             cCCC-CCCCCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCc
Q psy2960         146 GSDV-SSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANS  224 (405)
Q Consensus       146 G~~v-~~~~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G  224 (405)
                      |++| ++|++||||+++. ..|+|+||++++++.++++|+++++++||+++++++|||+++.+.+++++|++|||+||+|
T Consensus        95 G~~v~~~~~vGdrV~~~~-~~G~~aey~~v~~~~~~~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~~~g~~vlV~Ga~g  173 (354)
T 2j8z_A           95 GPGCQGHWKIGDTAMALL-PGGGQAQYVTVPEGLLMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLS  173 (354)
T ss_dssp             CSCC--CCCTTCEEEEEC-SSCCSBSEEEEEGGGEEECCTTCCHHHHTTSHHHHHHHHHHHTTTSCCCTTCEEEESSTTS
T ss_pred             CCCcCCCCCCCCEEEEec-CCCcceeEEEeCHHHcEECCCCCCHHHHHhccchHHHHHHHHHHhcCCCCCCEEEEECCcc
Confidence            9999 9999999999983 4699999999999999999999999999999999999999998779999999999999999


Q ss_pred             HHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCCCCCcEEEECCCchhHHHHHH
Q psy2960         225 ACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIPKPKLALNCVGGNSATNLLR  301 (405)
Q Consensus       225 ~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~  301 (405)
                      ++|++++|+|+..|++|+++.+++    ++++.++++|++.++|+++  +.+ +.+.+++.++|++|||+|++.+..+++
T Consensus       174 giG~~~~~~a~~~Ga~Vi~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~G~~~~~~~~~  249 (354)
T 2j8z_A          174 GVGTAAIQLTRMAGAIPLVTAGSQ----KKLQMAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIGGSYWEKNVN  249 (354)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCGGGHHHHHH
T ss_pred             HHHHHHHHHHHHcCCEEEEEeCCH----HHHHHHHHcCCcEEEecCChHHHHHHHHHhcCCCceEEEECCCchHHHHHHH
Confidence            999999999999999999887553    3467778999999988654  445 777887788999999999998888999


Q ss_pred             hcccCCEEEEEeccCCCCcccCc-ccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcC---cccCCcceeee
Q psy2960         302 TLVSKGVMVTYGGMSREPVQIPT-SAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTG---KLAAPAHKFVT  377 (405)
Q Consensus       302 ~l~~~G~~v~~g~~~~~~~~~~~-~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~l~~~~~~~~~  377 (405)
                      +++++|+++.+|........++. ..++.+++++.|+++........ +....+.++++++++++|   ++++.++++|+
T Consensus       250 ~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~-~~~~~~~~~~~~~l~~~g~~~~l~~~i~~~~~  328 (354)
T 2j8z_A          250 CLALDGRWVLYGLMGGGDINGPLFSKLLFKRGSLITSLLRSRDNKYK-QMLVNAFTEQILPHFSTEGPQRLLPVLDRIYP  328 (354)
T ss_dssp             HEEEEEEEEECCCTTCSCCCSCHHHHHHHTTCEEEECCSTTCCHHHH-HHHHHHHHHHTGGGGTC---CCCCCCEEEEEE
T ss_pred             hccCCCEEEEEeccCCCccCCChhHHHHhCCCEEEEEEccccccccc-HHHHHHHHHHHHHHHHcCCCccccCccceEEc
Confidence            99999999999965544445665 66778999999987654321111 122234456788999999   89988999999


Q ss_pred             hhhHHHHHHHHhhhcCCCCceEEEEecC
Q psy2960         378 LKNFQEALMNTMSIQGKSGVKYYIDFRQ  405 (405)
Q Consensus       378 ~~~~~~A~~~~~~~~~~~~gKvvl~~~~  405 (405)
                      ++++++||+.+.  +++..||+||+++|
T Consensus       329 l~~~~~A~~~~~--~~~~~gKvvv~~~~  354 (354)
T 2j8z_A          329 VTEIQEAHKYME--ANKNIGKIVLELPQ  354 (354)
T ss_dssp             GGGHHHHHHHHH--TTCCSSEEEEECCC
T ss_pred             HHHHHHHHHHHH--hCCCCceEEEecCC
Confidence            999999999998  88889999999875

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=1e-56  Score=430.21  Aligned_cols=322  Identities=22%  Similarity=0.273  Sum_probs=278.5

Q ss_pred             cccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCC-CCCCCCCccceEEEEEEEcC
Q psy2960          69 FSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIK-PTLPAVPGFEGVGEVVEVGS  147 (405)
Q Consensus        69 ~~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~-~~~p~~lG~E~~G~V~~vG~  147 (405)
                      .|++||++++++++++   +++++.|.|+|++|||||||.++|||++|++++.|..+.. ..+|.++|||++|+|+++|+
T Consensus         4 ~~~~mka~~~~~~~~~---l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~P~v~G~E~~G~V~~vG~   80 (343)
T 3gaz_A            4 TTPTMIAAVVEEANGP---FVLRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILGMDLAGTVVAVGP   80 (343)
T ss_dssp             --CEEEEEEECSTTCC---EEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCCGGGCCCSSBCCCCEEEEEEEEECT
T ss_pred             CchhheEEEEecCCCc---eEEEeccCCCCCCCEEEEEEEEEEeCHhhHHHhCCCCCCCCCCCCcccCcceEEEEEEECC
Confidence            4788999999999987   8999999999999999999999999999999999875322 46899999999999999999


Q ss_pred             CCCCCCCCCEEEecCC----CCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCC
Q psy2960         148 DVSSLAVGDHVIPDTQ----HLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGAN  223 (405)
Q Consensus       148 ~v~~~~~GdrV~~~~~----~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~  223 (405)
                      +|++|++||||+++..    .+|+|+||++++++.++++|+++++++||+++++++|||+++.+.+++++|++|||+||+
T Consensus        81 ~v~~~~vGdrV~~~~~g~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~  160 (343)
T 3gaz_A           81 EVDSFRVGDAVFGLTGGVGGLQGTHAQFAAVDARLLASKPAALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGG  160 (343)
T ss_dssp             TCCSCCTTCEEEEECCSSTTCCCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEEETTT
T ss_pred             CCCCCCCCCEEEEEeCCCCCCCcceeeEEEecHHHeeeCCCCCCHHHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEecCC
Confidence            9999999999998742    369999999999999999999999999999999999999999888999999999999988


Q ss_pred             cHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH-HhhhcCCCCCcEEEECCCchhHHHHHHh
Q psy2960         224 SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCVGGNSATNLLRT  302 (405)
Q Consensus       224 G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~  302 (405)
                      |++|++++|+|+..|++|+++ .++    ++++.++++|++.+.+.+++.+ +.+.|++.++|+||||+|++.+..++++
T Consensus       161 g~iG~~~~q~a~~~Ga~Vi~~-~~~----~~~~~~~~lGa~~i~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~  235 (343)
T 3gaz_A          161 GGVGHVAIQIALARGARVFAT-ARG----SDLEYVRDLGATPIDASREPEDYAAEHTAGQGFDLVYDTLGGPVLDASFSA  235 (343)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEE-ECH----HHHHHHHHHTSEEEETTSCHHHHHHHHHTTSCEEEEEESSCTHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHCCCEEEEE-eCH----HHHHHHHHcCCCEeccCCCHHHHHHHHhcCCCceEEEECCCcHHHHHHHHH
Confidence            999999999999999999888 443    3478889999998432334666 8888988999999999999888899999


Q ss_pred             cccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcc-eeeehhhH
Q psy2960         303 LVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAH-KFVTLKNF  381 (405)
Q Consensus       303 l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~-~~~~~~~~  381 (405)
                      ++++|+++.+|...    ..+...++.+++++.+++..........+....+.++++++++++|++++.++ ++|+++++
T Consensus       236 l~~~G~iv~~g~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~~l~~~  311 (343)
T 3gaz_A          236 VKRFGHVVSCLGWG----THKLAPLSFKQATYSGVFTLHTLLANEGLAHFGEMLREADALVQTGKLAPRLDPRTFSIAEI  311 (343)
T ss_dssp             EEEEEEEEESCCCS----CCCCHHHHHTTCEEEECCTTHHHHHTCSHHHHHHHHHHHHHHHHTTCCCCCBCSCCEETTCH
T ss_pred             HhcCCeEEEEcccC----ccccchhhhcCcEEEEEEeccchhcccchHHHHHHHHHHHHHHHCCCcccCccCcEecHHHH
Confidence            99999999998654    34555677899999998764321111223556788999999999999999888 79999999


Q ss_pred             HHHHHHHhhhcCCC----CceEEEEec
Q psy2960         382 QEALMNTMSIQGKS----GVKYYIDFR  404 (405)
Q Consensus       382 ~~A~~~~~~~~~~~----~gKvvl~~~  404 (405)
                      ++||+.+.  +++.    .||+|+++.
T Consensus       312 ~~A~~~~~--~~~~~Gr~~GK~v~~~~  336 (343)
T 3gaz_A          312 GSAYDAVL--GRNDVPRQRGKIAITVE  336 (343)
T ss_dssp             HHHHHHHH--TCTTCCCCSSBCEEECC
T ss_pred             HHHHHHHH--cCCCcccccceEEEEec
Confidence            99999998  6655    689999875

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=100.00  E-value=6.6e-57  Score=432.61  Aligned_cols=324  Identities=19%  Similarity=0.279  Sum_probs=273.4

Q ss_pred             ccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCC
Q psy2960          70 SYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDV  149 (405)
Q Consensus        70 ~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v  149 (405)
                      +++||++++++++.+ +.+++++.|.|+|++|||||||.++|||++|++.+.|.++....+|.++|||++|+|+++|++|
T Consensus         1 sm~mka~~~~~~g~~-~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v   79 (349)
T 4a27_A            1 SMEMRAVVLAGFGGL-NKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSV   79 (349)
T ss_dssp             CCCEEEEEECSSSSG-GGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECTTC
T ss_pred             CceeEEEEEccCCCc-ceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCcCCCCCCCccccceeEEEEEEeCCCC
Confidence            468999999999976 4499999999999999999999999999999999999877656789999999999999999999


Q ss_pred             CCCCCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHH
Q psy2960         150 SSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQN  229 (405)
Q Consensus       150 ~~~~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~  229 (405)
                      ++|++||||+++. .+|+|+||+.++++.++++|+++++++||+++++++|||+++.+.+++++|++|||+|++|++|++
T Consensus        80 ~~~~~GdrV~~~~-~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~  158 (349)
T 4a27_A           80 KGYEIGDRVMAFV-NYNAWAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQA  158 (349)
T ss_dssp             CSCCTTCEEEEEC-SSCCSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHH
T ss_pred             CCCCCCCEEEEec-CCCcceEEEEecHHHeEECCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHH
Confidence            9999999999984 569999999999999999999999999999999999999999888999999999999999999999


Q ss_pred             HHHHHHHcC-CcEEEEecCCcchHHHHHHHHHcCCcEEeChh-hHHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccC
Q psy2960         230 VIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGADYVFTEE-ELRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSK  306 (405)
Q Consensus       230 aiqla~~~G-~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~-d~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~  306 (405)
                      ++|+|+.+| ++|++++ +.+    +++.++ +|++++++.+ ++.+ +++.+ +.++|+||||+|++.+..++++++++
T Consensus       159 a~qla~~~g~~~V~~~~-~~~----~~~~~~-~ga~~~~~~~~~~~~~~~~~~-~~g~Dvv~d~~g~~~~~~~~~~l~~~  231 (349)
T 4a27_A          159 VAQLCSTVPNVTVFGTA-STF----KHEAIK-DSVTHLFDRNADYVQEVKRIS-AEGVDIVLDCLCGDNTGKGLSLLKPL  231 (349)
T ss_dssp             HHHHHTTSTTCEEEEEE-CGG----GHHHHG-GGSSEEEETTSCHHHHHHHHC-TTCEEEEEEECC-------CTTEEEE
T ss_pred             HHHHHHHcCCcEEEEeC-CHH----HHHHHH-cCCcEEEcCCccHHHHHHHhc-CCCceEEEECCCchhHHHHHHHhhcC
Confidence            999999996 5777766 322    256666 9999999832 3555 77776 56999999999998888889999999


Q ss_pred             CEEEEEeccCCCC----------------cccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccC
Q psy2960         307 GVMVTYGGMSREP----------------VQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA  370 (405)
Q Consensus       307 G~~v~~g~~~~~~----------------~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~  370 (405)
                      |+++.+|......                ..++...++.+++++.++++..+......+....+.++++++++++|++++
T Consensus       232 G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~  311 (349)
T 4a27_A          232 GTYILYGSSNMVTGETKSFFSFAKSWWQVEKVNPIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKKIKP  311 (349)
T ss_dssp             EEEEEEC-------------------------CHHHHHHHTCEEEEECHHHHHHTSCCHHHHHHHHHHHHHHHHTTSCCC
T ss_pred             CEEEEECCCcccccccccccccccccccccccCHHHHhhcCceEEEEeehheeccccchHHHHHHHHHHHHHHHCCCccc
Confidence            9999999643111                124445667799999999886655444333556788999999999999999


Q ss_pred             CcceeeehhhHHHHHHHHhhhcCCCCceEEEEec
Q psy2960         371 PAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       371 ~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                      .++++|+++++++||+.+.  +++..||+||+++
T Consensus       312 ~i~~~~~l~~~~~A~~~l~--~~~~~GKvvi~~~  343 (349)
T 4a27_A          312 VVDSLWALEEVKEAMQRIH--DRGNIGKLILDVE  343 (349)
T ss_dssp             CEEEEECGGGHHHHHHHHH--TTCCSSEEEEETT
T ss_pred             cccceECHHHHHHHHHHHH--hCCCCceEEEecC
Confidence            9999999999999999999  8999999999986

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=100.00  E-value=1.9e-57  Score=436.45  Aligned_cols=326  Identities=21%  Similarity=0.346  Sum_probs=278.7

Q ss_pred             CCcccceeEEEEc--cCCCCccceEeeee---------cCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCc
Q psy2960          67 RGFSYLANKLVYN--QHGTPLRVVTVENE---------TLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG  135 (405)
Q Consensus        67 ~~~~~~~~a~~~~--~~g~~~~~l~~~~~---------~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG  135 (405)
                      .++|.+||+++++  +++.+.+.+++++.         |.|+|++|||||||.++|||++|++.+.|.++....+|.++|
T Consensus         5 m~~p~~mka~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G   84 (349)
T 3pi7_A            5 MTIPSEMKALLLVGDGYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVKGRPAG   84 (349)
T ss_dssp             CCCCSEEEEEEECSCBSCSSCCCSCCCCSTTTEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSSCBCTTSBCC
T ss_pred             CCCchhheEEEEEccccCCCcccceEEEeecccccccCCCCCCCCCeEEEEEEEecCCHHHHHHhcccCCCCCCCCCCcc
Confidence            4578899999999  55322244778888         999999999999999999999999999998776567899999


Q ss_pred             cceEEEEEEEcCCC-CCCCCCCEEEecC--CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCC
Q psy2960         136 FEGVGEVVEVGSDV-SSLAVGDHVIPDT--QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLS  212 (405)
Q Consensus       136 ~E~~G~V~~vG~~v-~~~~~GdrV~~~~--~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~  212 (405)
                      ||++|+|+++|++| ++|++||||++..  ..+|+|+||++++++.++++|+++++++||++++.++|||+++.. ++ +
T Consensus        85 ~E~~G~V~~vG~~v~~~~~vGdrV~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~-~~-~  162 (349)
T 3pi7_A           85 FEGVGTIVAGGDEPYAKSLVGKRVAFATGLSNWGSWAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIAMFDI-VK-Q  162 (349)
T ss_dssp             SEEEEEEEEECSSHHHHHHTTCEEEEECTTSSCCSSBSEEEEEGGGEEECCTTCCC--GGGSSHHHHHHHHHHHH-HH-H
T ss_pred             ceEEEEEEEECCCccCCCCCCCEEEEeccCCCCccceeeEeechHHeEECCCCCCHHHHhhccccHHHHHHHHHH-Hh-h
Confidence            99999999999999 9999999999874  246999999999999999999999999999999999999976654 56 6


Q ss_pred             CC-CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChh--hHHH-HhhhcCCCCCcEEE
Q psy2960         213 PG-DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIPKPKLAL  288 (405)
Q Consensus       213 ~g-~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~--d~~~-i~~~t~g~g~Dvvl  288 (405)
                      +| ++|||+||+|++|++++|+|+++|++|+++++++++    ++.++++|+++++|++  ++.+ +++.|++.++|+||
T Consensus       163 ~g~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~----~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~~~g~D~vi  238 (349)
T 3pi7_A          163 EGEKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQ----IALLKDIGAAHVLNEKAPDFEATLREVMKAEQPRIFL  238 (349)
T ss_dssp             HCCSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGG----HHHHHHHTCSEEEETTSTTHHHHHHHHHHHHCCCEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHcCCCEEEECCcHHHHHHHHHHhcCCCCcEEE
Confidence            77 799999999999999999999999999999866544    6778899999999875  3556 88888778999999


Q ss_pred             ECCCchhHHHHHHhcccCCEEEEEeccCCCCcccCc-ccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCc
Q psy2960         289 NCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPT-SAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGK  367 (405)
Q Consensus       289 d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~-~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  367 (405)
                      ||+|++....++++++++|+++.+|........++. ..++.+++++.|++...+....+  ....+.++++++++++|+
T Consensus       239 d~~g~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~--~~~~~~~~~~~~l~~~g~  316 (349)
T 3pi7_A          239 DAVTGPLASAIFNAMPKRARWIIYGRLDPDATVIREPGQLIFQHKHIEGFWLSEWMRQFK--ERRGPAILEAQKRFSDGR  316 (349)
T ss_dssp             ESSCHHHHHHHHHHSCTTCEEEECCCSCCSCCCCSCTHHHHHSCCEEEECCHHHHHHHTH--HHHHHHHHHC-CTTTTSS
T ss_pred             ECCCChhHHHHHhhhcCCCEEEEEeccCCCCCCCCchhhhhccccEEEEEEehhhhhhCc--HHHHHHHHHHHHHHHcCC
Confidence            999999888899999999999999976655556666 67788999999998877654433  556778999999999999


Q ss_pred             ccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         368 LAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       368 l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      +++.++++|+++++++||+. .  +++..||+||++
T Consensus       317 l~~~i~~~~~l~~~~~A~~~-~--~~~~~gKvvl~p  349 (349)
T 3pi7_A          317 WSTDVTAVVPLAEAIAWVPA-E--LTKPNGKVFIRP  349 (349)
T ss_dssp             CCC-CCEEEEHHHHHHHHHH-H--HTSSSSCEEEEC
T ss_pred             cccccceEEcHHHHHHHHHH-H--hCCCCceEEEeC
Confidence            99999999999999999994 4  456789999975

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=100.00  E-value=5.8e-56  Score=425.57  Aligned_cols=320  Identities=20%  Similarity=0.284  Sum_probs=277.0

Q ss_pred             cceeEEEEccCC---CCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcC
Q psy2960          71 YLANKLVYNQHG---TPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGS  147 (405)
Q Consensus        71 ~~~~a~~~~~~g---~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~  147 (405)
                      |+||+++++++|   .+ +.+++++.|.|+|++|||||||.++|||++|++.+.|..   ..+|.++|||++|+|+++|+
T Consensus         1 m~MkA~~~~~~G~~~~~-~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~---~~~p~i~G~e~~G~V~~vG~   76 (346)
T 3fbg_A            1 MSLKAIGFEQPFKLSDG-NLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLMDV---SKAPRVLGFDAIGVVESVGN   76 (346)
T ss_dssp             -CEEEEEBSSCCCGGGC-CCCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHTTSCC---SSSCBCCCCCEEEEEEEECT
T ss_pred             CCcEEEEEEeccccCCC-ceeEeccccCCCCCCCEEEEEEEEEEcCHHHHHHHhCCC---CCCCcCcCCccEEEEEEeCC
Confidence            579999999988   33 569999999999999999999999999999999998872   36799999999999999999


Q ss_pred             CCCCCCCCCEEEecC--CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCC------CCCEEEE
Q psy2960         148 DVSSLAVGDHVIPDT--QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLS------PGDVVIQ  219 (405)
Q Consensus       148 ~v~~~~~GdrV~~~~--~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~------~g~~VLI  219 (405)
                      +|++|++||||++..  ..+|+|+||++++++.++++|+++++++||+++++++|||+++.+.++++      +|++|||
T Consensus        77 ~v~~~~~GdrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~g~~VlV  156 (346)
T 3fbg_A           77 EVTMFNQGDIVYYSGSPDQNGSNAEYQLINERLVAKAPKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLI  156 (346)
T ss_dssp             TCCSCCTTCEEEECCCTTSCCSSBSEEEEEGGGEEECCSSSCHHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHTTCEEEE
T ss_pred             CCCcCCCCCEEEEcCCCCCCcceeEEEEEChHHeEECCCCCCHHHhhhcchhHHHHHHHHHHhcCCccccccCCCCEEEE
Confidence            999999999999863  24699999999999999999999999999999999999999998889998      9999999


Q ss_pred             eCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh-HHH-HhhhcCCCCCcEEEECCCchhH-
Q psy2960         220 NGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE-LRN-ISRDASIPKPKLALNCVGGNSA-  296 (405)
Q Consensus       220 ~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d-~~~-i~~~t~g~g~Dvvld~~g~~~~-  296 (405)
                      +||+|++|++++|+|+.+|++|++++++    +++++.++++|+++++++++ +.+ +++. .++++|+||||+|++.. 
T Consensus       157 ~gg~G~vG~~a~qla~~~Ga~Vi~~~~~----~~~~~~~~~lGa~~vi~~~~~~~~~~~~~-~~~g~Dvv~d~~g~~~~~  231 (346)
T 3fbg_A          157 INGAGGVGSIATQIAKAYGLRVITTASR----NETIEWTKKMGADIVLNHKESLLNQFKTQ-GIELVDYVFCTFNTDMYY  231 (346)
T ss_dssp             ESTTSHHHHHHHHHHHHTTCEEEEECCS----HHHHHHHHHHTCSEEECTTSCHHHHHHHH-TCCCEEEEEESSCHHHHH
T ss_pred             EcCCCHHHHHHHHHHHHcCCEEEEEeCC----HHHHHHHHhcCCcEEEECCccHHHHHHHh-CCCCccEEEECCCchHHH
Confidence            9988999999999999999999988754    34578889999999998764 555 7666 67799999999998765 


Q ss_pred             HHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhh-ccHHHHHHHHHHHHHHHHcCcccCCccee
Q psy2960         297 TNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKEN-KESAERKSMMNELTEMMRTGKLAAPAHKF  375 (405)
Q Consensus       297 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~l~~~~~~~  375 (405)
                      ..++++++++|+++.+|..   ...++...+..+++++.++++....... ..+....+.++++++++++|++++.++++
T Consensus       232 ~~~~~~l~~~G~iv~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~  308 (346)
T 3fbg_A          232 DDMIQLVKPRGHIATIVAF---ENDQDLNALKPKSLSFSHEFMFARPLNQTDDMIKHHEYLEDITNKVEQNIYQPTTTKV  308 (346)
T ss_dssp             HHHHHHEEEEEEEEESSCC---SSCBCGGGGTTTTCEEEECCTTHHHHTTCTTTHHHHHHHHHHHHHHHTTSSCCCEEEE
T ss_pred             HHHHHHhccCCEEEEECCC---CCCCccccccccceEEEEEEEecccccchhhHHHHHHHHHHHHHHHHCCCEECCccce
Confidence            6789999999999988742   2345566777899999997765432211 12245578899999999999999998888


Q ss_pred             e---ehhhHHHHHHHHhhhcCCCCceEEEEec
Q psy2960         376 V---TLKNFQEALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       376 ~---~~~~~~~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                      |   +++++++||+.+.  +++..||+||+++
T Consensus       309 ~~~~~l~~~~~A~~~~~--~g~~~GKvvl~~~  338 (346)
T 3fbg_A          309 IEGLTTENIYQAHQILE--SNTMIGKLVINLN  338 (346)
T ss_dssp             EESCCHHHHHHHHHHHH--TTCCCSEEEEEC-
T ss_pred             ecCCCHHHHHHHHHHHh--cCCcceEEEEecC
Confidence            7   9999999999999  8999999999986

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=7.3e-56  Score=425.31  Aligned_cols=321  Identities=22%  Similarity=0.303  Sum_probs=279.4

Q ss_pred             cccceeEEEEccCCCCccceEe-eeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcC
Q psy2960          69 FSYLANKLVYNQHGTPLRVVTV-ENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGS  147 (405)
Q Consensus        69 ~~~~~~a~~~~~~g~~~~~l~~-~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~  147 (405)
                      .|.+||++++++++.+ +.+++ ++.|.|+|++|||||||.++|||++|++.+.|.++..+.+|.++|||++|+|+++|+
T Consensus        26 ~~~~Mka~~~~~~g~~-~~l~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~  104 (351)
T 1yb5_A           26 GQKLMRAVRVFEFGGP-EVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGD  104 (351)
T ss_dssp             --CEEEEEEESSCSSG-GGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECT
T ss_pred             CcceEEEEEEccCCCc-ceeEEeeecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcCCceeEEEEEEECC
Confidence            4678999999998876 55888 899999999999999999999999999999997754456899999999999999999


Q ss_pred             CCCCCCCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHH
Q psy2960         148 DVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACG  227 (405)
Q Consensus       148 ~v~~~~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG  227 (405)
                      +|++|++||||++.....|+|+||++++++.++++|+++++++||+++++++|||+++.+.+++++|++|||+|++|++|
T Consensus       105 ~v~~~~vGdrV~~~~~~~G~~aey~~v~~~~~~~~P~~l~~~~aA~l~~~~~ta~~al~~~~~~~~g~~vlV~GasggiG  184 (351)
T 1yb5_A          105 NASAFKKGDRVFTSSTISGGYAEYALAADHTVYKLPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVG  184 (351)
T ss_dssp             TCTTCCTTCEEEESCCSSCSSBSEEEEEGGGEEECCTTSCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHH
T ss_pred             CCCCCCCCCEEEEeCCCCCcceeEEEECHHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhhCCCCcCEEEEECCCChHH
Confidence            99999999999998544699999999999999999999999999999999999999998778999999999999999999


Q ss_pred             HHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcc
Q psy2960         228 QNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLV  304 (405)
Q Consensus       228 ~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~  304 (405)
                      ++++|+|+..|++|+++++++    ++++.++++|++.++|+++  +.+ +.+.+++.++|++|||+|++.+..++++++
T Consensus       185 ~~~~~~a~~~Ga~Vi~~~~~~----~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~G~~~~~~~~~~l~  260 (351)
T 1yb5_A          185 LAACQIARAYGLKILGTAGTE----EGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLS  260 (351)
T ss_dssp             HHHHHHHHHTTCEEEEEESSH----HHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHEE
T ss_pred             HHHHHHHHHCCCEEEEEeCCh----hHHHHHHHcCCCEEEeCCCchHHHHHHHHcCCCCcEEEEECCChHHHHHHHHhcc
Confidence            999999999999999887653    3467888999999988653  445 777887789999999999988888999999


Q ss_pred             cCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHH
Q psy2960         305 SKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEA  384 (405)
Q Consensus       305 ~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A  384 (405)
                      ++|+++.+|..  ....++...++.+++++.|+++...     .++...+.++.+.+++++|++++.++++|+++++++|
T Consensus       261 ~~G~iv~~g~~--~~~~~~~~~~~~~~~~i~g~~~~~~-----~~~~~~~~~~~l~~~~~~g~l~~~i~~~~~l~~~~~A  333 (351)
T 1yb5_A          261 HGGRVIVVGSR--GTIEINPRDTMAKESSIIGVTLFSS-----TKEEFQQYAAALQAGMEIGWLKPVIGSQYPLEKVAEA  333 (351)
T ss_dssp             EEEEEEECCCC--SCEEECTHHHHTTTCEEEECCGGGC-----CHHHHHHHHHHHHHHHHHTCCCCCEEEEEEGGGHHHH
T ss_pred             CCCEEEEEecC--CCCccCHHHHHhCCcEEEEEEeecC-----CHHHHHHHHHHHHHHHHCCCccCccceEEcHHHHHHH
Confidence            99999999953  2334555667789999999865432     1255677788899999999999999999999999999


Q ss_pred             HHH-HhhhcCCCCceEEEEe
Q psy2960         385 LMN-TMSIQGKSGVKYYIDF  403 (405)
Q Consensus       385 ~~~-~~~~~~~~~gKvvl~~  403 (405)
                      |+. +.  +++..||+||++
T Consensus       334 ~~~~~~--~~~~~gKvvi~~  351 (351)
T 1yb5_A          334 HENIIH--GSGATGKMILLL  351 (351)
T ss_dssp             HHHHHH--SSCCSSEEEEEC
T ss_pred             HHHHHH--hCCCCeEEEEeC
Confidence            998 55  667889999974

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=100.00  E-value=1.5e-55  Score=425.08  Aligned_cols=324  Identities=18%  Similarity=0.254  Sum_probs=277.9

Q ss_pred             CcccceeEEEEccC---CCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEE
Q psy2960          68 GFSYLANKLVYNQH---GTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVE  144 (405)
Q Consensus        68 ~~~~~~~a~~~~~~---g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~  144 (405)
                      ..|++||+++++++   +.+ ..+++++.|.|+|++|||||||.++|||++|++.+.|.++. ..+|.++|||++|+|++
T Consensus        18 ~~m~~MkA~~~~~~~~~~~~-~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~v~G~E~~G~V~~   95 (363)
T 4dvj_A           18 LYFQSMKAVGYNKPAPITDD-ASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPD-GTDWKVIGYDAAGIVSA   95 (363)
T ss_dssp             -CCCEEEEEEBSSCCCTTST-TSSEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCCC---CCSBCCCCCEEEEEEE
T ss_pred             hhhheeEEEEEeccCCCCCC-ceEEEeecCCCCCCCCEEEEEEEEEEeCHHHHHHHcCCCCC-CCCCCcccceeEEEEEE
Confidence            46789999999987   334 55899999999999999999999999999999999998764 47899999999999999


Q ss_pred             EcCCCCCCCCCCEEEecC--CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCC-----CCCEE
Q psy2960         145 VGSDVSSLAVGDHVIPDT--QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLS-----PGDVV  217 (405)
Q Consensus       145 vG~~v~~~~~GdrV~~~~--~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~-----~g~~V  217 (405)
                      +|++|++|++||||+++.  ...|+|+||++++++.++++|+++++++||+++++++|||+++.+.++++     +|++|
T Consensus        96 vG~~v~~~~vGdrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g~~V  175 (363)
T 4dvj_A           96 VGPDVTLFRPGDEVFYAGSIIRPGTNAEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAI  175 (363)
T ss_dssp             ECTTCCSCCTTCEEEECCCTTSCCSCBSEEEEEGGGCEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSEEEE
T ss_pred             eCCCCCCCCCCCEEEEccCCCCCccceEEEEeCHHHeeECCCCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCCCEE
Confidence            999999999999999863  34699999999999999999999999999999999999999998888998     99999


Q ss_pred             EEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh-HHH-HhhhcCCCCCcEEEECCCch
Q psy2960         218 IQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE-LRN-ISRDASIPKPKLALNCVGGN  294 (405)
Q Consensus       218 LI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d-~~~-i~~~t~g~g~Dvvld~~g~~  294 (405)
                      ||+||+|++|++++|+|+++ |++|++++++    +++++.++++|+++++|+++ +.+ +++. .++++|+||||+|++
T Consensus       176 lV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~----~~~~~~~~~lGad~vi~~~~~~~~~v~~~-~~~g~Dvvid~~g~~  250 (363)
T 4dvj_A          176 LIVGGAGGVGSIAVQIARQRTDLTVIATASR----PETQEWVKSLGAHHVIDHSKPLAAEVAAL-GLGAPAFVFSTTHTD  250 (363)
T ss_dssp             EEESTTSHHHHHHHHHHHHHCCSEEEEECSS----HHHHHHHHHTTCSEEECTTSCHHHHHHTT-CSCCEEEEEECSCHH
T ss_pred             EEECCCCHHHHHHHHHHHHhcCCEEEEEeCC----HHHHHHHHHcCCCEEEeCCCCHHHHHHHh-cCCCceEEEECCCch
Confidence            99998899999999999984 8999988754    34578899999999999764 555 6666 577999999999986


Q ss_pred             -hHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhh-hccHHHHHHHHHHHHHHHHcCcccCCc
Q psy2960         295 -SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKE-NKESAERKSMMNELTEMMRTGKLAAPA  372 (405)
Q Consensus       295 -~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~~  372 (405)
                       .+..++++++++|+++.+|..    ..++...+..+++++.++........ .+.+....+.++++++++++|++++.+
T Consensus       251 ~~~~~~~~~l~~~G~iv~~g~~----~~~~~~~~~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i  326 (363)
T 4dvj_A          251 KHAAEIADLIAPQGRFCLIDDP----SAFDIMLFKRKAVSIHHELMFTRPMFGTPDMSEQGRLLNDVSRLVDEGRLRTTL  326 (363)
T ss_dssp             HHHHHHHHHSCTTCEEEECSCC----SSCCGGGGTTTTCEEEECCTTHHHHHTCTTTHHHHHHHHHHHHHHHHTSSCCCE
T ss_pred             hhHHHHHHHhcCCCEEEEECCC----CccchHHHhhccceEEEEEeeccccccCcchhhHHHHHHHHHHHHHCCCeeccc
Confidence             567889999999999998632    34566677889999999776542111 111234467899999999999999988


Q ss_pred             ceee---ehhhHHHHHHHHhhhcCCCCceEEEEec
Q psy2960         373 HKFV---TLKNFQEALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       373 ~~~~---~~~~~~~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                      +++|   +++++++||+.+.  +++..||+||++.
T Consensus       327 ~~~~~~~~l~~~~~A~~~~~--~~~~~GKvVl~~~  359 (363)
T 4dvj_A          327 TNRLSPINAANLKQAHALVE--SGTARGKVVIEGF  359 (363)
T ss_dssp             EEEECSCSHHHHHHHHHHHH--HTCCCSEEEEECS
T ss_pred             cceecCCCHHHHHHHHHHHH--hCCCceEEEEeCc
Confidence            8766   9999999999999  8999999999985

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=3.3e-55  Score=425.26  Aligned_cols=317  Identities=19%  Similarity=0.248  Sum_probs=272.9

Q ss_pred             CCcccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEc
Q psy2960          67 RGFSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVG  146 (405)
Q Consensus        67 ~~~~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG  146 (405)
                      ..+|++|||+++++++++   +++++.|.|+|+++||||||.++|||++|++.+.|.++. ..+|.++|||++|+|+++|
T Consensus         3 ~~~~~tmkA~v~~~~~~~---l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~vG   78 (378)
T 3uko_A            3 QGQVITCKAAVAYEPNKP---LVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVG   78 (378)
T ss_dssp             TTSCEEEEEEEBCSTTSC---CEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTCCTT-CCSSBCCCCEEEEEEEEEC
T ss_pred             cccceeeEEEEEecCCCc---cEEEEecCCCCCCCeEEEEEEEeecCHHHHHHhcCCCCC-CCCCccCCccceEEEEEeC
Confidence            346899999999999886   899999999999999999999999999999999998664 4789999999999999999


Q ss_pred             CCCCCCCCCCEEEecCC------------------------------------------------CCCcccceEeecccc
Q psy2960         147 SDVSSLAVGDHVIPDTQ------------------------------------------------HLGTWRNYGKFNHDV  178 (405)
Q Consensus       147 ~~v~~~~~GdrV~~~~~------------------------------------------------~~G~~a~~~~v~~~~  178 (405)
                      ++|++|++||||++.+.                                                ..|+|+||++++++.
T Consensus        79 ~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~  158 (378)
T 3uko_A           79 EGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVS  158 (378)
T ss_dssp             TTCCSCCTTCEEEECSSCCCSSSHHHHHTSCSCCCSSHHHHTTTCCTTTSSCSEEETTEEEBCCTTTCCSBSEEEEEGGG
T ss_pred             CCCCcCCCCCEEEEecCCCCCCChhhhCcCcCcCcCcccccccccccccCccccccCCcccccccCCcceEeEEEechhh
Confidence            99999999999987642                                                126999999999999


Q ss_pred             eEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHH
Q psy2960         179 LMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSY  257 (405)
Q Consensus       179 ~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~  257 (405)
                      ++++|+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+++|+ +|+++.++++    +++.
T Consensus       159 ~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~~Vi~~~~~~~----~~~~  233 (378)
T 3uko_A          159 VAKIDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGL-GTVGLAVAEGAKTAGASRIIGIDIDSK----KYET  233 (378)
T ss_dssp             EEECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECC-SHHHHHHHHHHHHHTCSCEEEECSCTT----HHHH
T ss_pred             eEECCCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHH----HHHH
Confidence            99999999999999999999999999988899999999999998 9999999999999999 6777765543    4788


Q ss_pred             HHHcCCcEEeChh----hHHH-HhhhcCCCCCcEEEECCCch-hHHHHHHhcccC-CEEEEEeccCC-CCcccCcccccc
Q psy2960         258 LKSLGADYVFTEE----ELRN-ISRDASIPKPKLALNCVGGN-SATNLLRTLVSK-GVMVTYGGMSR-EPVQIPTSAFIF  329 (405)
Q Consensus       258 ~~~lg~~~v~~~~----d~~~-i~~~t~g~g~Dvvld~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~  329 (405)
                      ++++|+++++|++    ++.+ +++.|++ ++|+||||+|++ .+..++++++++ |+++.+|.... ....++...++ 
T Consensus       234 a~~lGa~~vi~~~~~~~~~~~~i~~~~~g-g~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~-  311 (378)
T 3uko_A          234 AKKFGVNEFVNPKDHDKPIQEVIVDLTDG-GVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-  311 (378)
T ss_dssp             HHTTTCCEEECGGGCSSCHHHHHHHHTTS-CBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHH-
T ss_pred             HHHcCCcEEEccccCchhHHHHHHHhcCC-CCCEEEECCCCHHHHHHHHHHhhccCCEEEEEcccCCCCccccCHHHHh-
Confidence            9999999999875    3556 8888887 999999999995 557789999996 99999996432 23344444444 


Q ss_pred             cCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccC--CcceeeehhhHHHHHHHHhhhcCCCCceEEEEecC
Q psy2960         330 KDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ  405 (405)
Q Consensus       330 k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~~~  405 (405)
                      +++++.|+++..+.        ..+.++++++++++|++++  .++++|+|+++++||+.+.  +++.. |+||++++
T Consensus       312 ~~~~i~g~~~~~~~--------~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~--~g~~~-Kvvi~~~~  378 (378)
T 3uko_A          312 TGRVWKGTAFGGFK--------SRTQVPWLVEKYMNKEIKVDEYITHNLTLGEINKAFDLLH--EGTCL-RCVLDTSK  378 (378)
T ss_dssp             TTCEEEECSGGGCC--------HHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHTT--CTTCS-EEEEETTC
T ss_pred             cCcEEEEEEecCCC--------chHHHHHHHHHHHcCCCChhHheeeEeeHHHHHHHHHHHH--CCCce-EEEEecCC
Confidence            48999998765432        1355888999999999885  4789999999999999998  77765 99999864

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=100.00  E-value=2.5e-56  Score=424.56  Aligned_cols=316  Identities=18%  Similarity=0.248  Sum_probs=274.8

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||+++++++|++ +.+++++.|.|+|++|||||||.++|||++|++.+.|.++....+|.++|||++|+|+++|  +++|
T Consensus         1 MkA~~~~~~g~~-~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~G--v~~~   77 (324)
T 3nx4_A            1 MQALILEQQDGK-TLASVQHLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKIIRHFPMIPGIDFAGTVHASE--DPRF   77 (324)
T ss_dssp             CEEEEEEESSSS-EEEEEEECCGGGSCCCSEEEEEEEEEECHHHHHHHHTCTTCCCSSSBCCCSEEEEEEEEES--STTC
T ss_pred             CceEEEecCCCC-ceeeEeecCCCCCCCCEEEEEEEEEeCCHHHHhhhcCCCCCCCCCCccccceeEEEEEEeC--CCCC
Confidence            899999999987 4589999999999999999999999999999999999877656789999999999999998  6899


Q ss_pred             CCCCEEEecC-----CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHh--hcCCCCCC-EEEEeCCCc
Q psy2960         153 AVGDHVIPDT-----QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKD--YNSLSPGD-VVIQNGANS  224 (405)
Q Consensus       153 ~~GdrV~~~~-----~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~--~~~~~~g~-~VLI~ga~G  224 (405)
                      ++||||++.+     ..+|+|+||+.++++.++++|+++++++||+++++++|||+++..  ..++++++ +|||+|++|
T Consensus        78 ~vGdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~g~VlV~Ga~G  157 (324)
T 3nx4_A           78 HAGQEVLLTGWGVGENHWGGLAERARVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASG  157 (324)
T ss_dssp             CTTCEEEEECTTBTTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTS
T ss_pred             CCCCEEEEcccccCCCCCCceeeEEecCHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhhcccCCCCCeEEEECCCc
Confidence            9999999752     246999999999999999999999999999999999999999863  35677743 499999999


Q ss_pred             HHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCCchhHHHHHHhcc
Q psy2960         225 ACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLV  304 (405)
Q Consensus       225 ~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~  304 (405)
                      ++|++++|+|+++|++|+++++++++    ++.++++|+++++|+++...+++.+ +.++|++|||+|++.+..++++++
T Consensus       158 ~vG~~aiqla~~~Ga~Vi~~~~~~~~----~~~~~~lGa~~vi~~~~~~~~~~~~-~~~~d~v~d~~g~~~~~~~~~~l~  232 (324)
T 3nx4_A          158 GVGSTAVALLHKLGYQVAAVSGREST----HGYLKSLGANRILSRDEFAESRPLE-KQLWAGAIDTVGDKVLAKVLAQMN  232 (324)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESCGGG----HHHHHHHTCSEEEEGGGSSCCCSSC-CCCEEEEEESSCHHHHHHHHHTEE
T ss_pred             HHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHhcCCCEEEecCCHHHHHhhc-CCCccEEEECCCcHHHHHHHHHHh
Confidence            99999999999999999999876544    6888899999999987643344444 358999999999998888999999


Q ss_pred             cCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHH
Q psy2960         305 SKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEA  384 (405)
Q Consensus       305 ~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A  384 (405)
                      ++|+++.+|........++...++.|++++.|++.....     +....+.++++.+++++|++++. +++|+++++++|
T Consensus       233 ~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~l~~~g~l~~~-~~~~~l~~~~~A  306 (324)
T 3nx4_A          233 YGGCVAACGLAGGFALPTTVMPFILRNVRLQGVDSVMTP-----PARRAEAWARLVKDLPESFYAQA-ATEITLADAPKF  306 (324)
T ss_dssp             EEEEEEECCCTTCSEEEEESHHHHHHCCEEEECCSTTCC-----HHHHHHHHHHHHHHSCHHHHHHH-EEEEEGGGHHHH
T ss_pred             cCCEEEEEecCCCCCCCCCHHHHhhcCeEEEEEeccccC-----hHHHHHHHHHHHHHHHcCCCCCC-ceeEeHHHHHHH
Confidence            999999999765544455666777899999998754431     24556778999999999999987 999999999999


Q ss_pred             HHHHhhhcCCCCceEEEEec
Q psy2960         385 LMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       385 ~~~~~~~~~~~~gKvvl~~~  404 (405)
                      |+.+.  +++..||+||+++
T Consensus       307 ~~~~~--~~~~~gkvvv~~~  324 (324)
T 3nx4_A          307 ADAII--NNQVQGRTLVKIK  324 (324)
T ss_dssp             HHHHH--TTCCCSEEEEECC
T ss_pred             HHHHH--hCCCCceEEEecC
Confidence            99999  8999999999874

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=100.00  E-value=2.8e-55  Score=418.82  Aligned_cols=321  Identities=21%  Similarity=0.278  Sum_probs=275.0

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccC-CCC-CCCCCCCccceEEEEEEEcCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVY-PIK-PTLPAVPGFEGVGEVVEVGSDVS  150 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~-~~~-~~~p~~lG~E~~G~V~~vG~~v~  150 (405)
                      ||+++++++|.+ +.+++++.|.|+|++|||||||.++|||++|++++.|.+ +.. ..+|.++|||++|+|+++|++|+
T Consensus         2 Mka~~~~~~g~~-~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~   80 (333)
T 1wly_A            2 VMAAVIHKKGGP-DNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVT   80 (333)
T ss_dssp             CEEEEESSCSSG-GGEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHC----------CCEECCCEEEEEEEEECTTCC
T ss_pred             cEEEEEcccCCc-ceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhCCCcCCCCCCCCCccccceeEEEEEEECCCCC
Confidence            899999998876 458999999999999999999999999999999999876 211 35799999999999999999999


Q ss_pred             CCCCCCEEEecCCCCCcccceEeecccceEEcCCCCChhh--hccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHH
Q psy2960         151 SLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTE--ISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQ  228 (405)
Q Consensus       151 ~~~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~--Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~  228 (405)
                      +|++||||++.....|+|+||++++++.++++|+++++++  ||+++++++|||+++.+.+++++|++|||+|++|++|+
T Consensus        81 ~~~~GdrV~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~  160 (333)
T 1wly_A           81 DFTVGERVCTCLPPLGAYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGH  160 (333)
T ss_dssp             SCCTTCEEEECSSSCCCSBSEEEEEGGGCEECCTTCCCCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSTTHH
T ss_pred             CCCCCCEEEEecCCCCcceeEEEecHHHcEeCCCCCChHHhCccchhhhHHHHHHHHHHhhCCCCCCEEEEECCccHHHH
Confidence            9999999987743269999999999999999999999999  99999999999999987789999999999999999999


Q ss_pred             HHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhccc
Q psy2960         229 NVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVS  305 (405)
Q Consensus       229 ~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~  305 (405)
                      +++|+|+..|++|+++.+++    ++++.++++|+++++|+++  +.+ +.+.+++.++|++|||+|++.+..+++++++
T Consensus       161 ~~~~~a~~~G~~Vi~~~~~~----~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~~~~~~d~vi~~~g~~~~~~~~~~l~~  236 (333)
T 1wly_A          161 IMVPWARHLGATVIGTVSTE----EKAETARKLGCHHTINYSTQDFAEVVREITGGKGVDVVYDSIGKDTLQKSLDCLRP  236 (333)
T ss_dssp             HHHHHHHHTTCEEEEEESSH----HHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEECSCTTTHHHHHHTEEE
T ss_pred             HHHHHHHHCCCEEEEEeCCH----HHHHHHHHcCCCEEEECCCHHHHHHHHHHhCCCCCeEEEECCcHHHHHHHHHhhcc
Confidence            99999999999999887653    3467778899999987653  445 7777777899999999999888889999999


Q ss_pred             CCEEEEEeccCCCCcccCcc-cccccC--eEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHH
Q psy2960         306 KGVMVTYGGMSREPVQIPTS-AFIFKD--ITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQ  382 (405)
Q Consensus       306 ~G~~v~~g~~~~~~~~~~~~-~~~~k~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~  382 (405)
                      +|+++.+|........++.. .++.|+  +++.|++.. +.   ..+....+.++++++++++|++++.++++|++++++
T Consensus       237 ~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~-~~---~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~  312 (333)
T 1wly_A          237 RGMCAAYGHASGVADPIRVVEDLGVRGSLFITRPALWH-YM---SNRSEIDEGSKCLFDAVKAGVLHSSVAKTFPLREAA  312 (333)
T ss_dssp             EEEEEECCCTTCCCCCCCHHHHTTTTTSCEEECCCGGG-GS---CSHHHHHHHHHHHHHHHHTTSCCCCEEEEEEGGGHH
T ss_pred             CCEEEEEecCCCCcCCCChhHhhhhcCCcEEEEEeehh-hc---cCHHHHHHHHHHHHHHHHCCCcCCCcceEEeHHHHH
Confidence            99999999655433445555 677888  999987552 11   122455678999999999999999899999999999


Q ss_pred             HHHHHHhhhcCCCCceEEEEec
Q psy2960         383 EALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       383 ~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                      +||+.+.  +++..||+||+++
T Consensus       313 ~A~~~~~--~~~~~gKvvi~~~  332 (333)
T 1wly_A          313 AAHKYMG--GRQTIGSIVLLPQ  332 (333)
T ss_dssp             HHHHHHH--HCSCCSEEEEETT
T ss_pred             HHHHHHH--cCCCceEEEEEeC
Confidence            9999999  7888999999875

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.9e-55  Score=423.97  Aligned_cols=309  Identities=22%  Similarity=0.306  Sum_probs=266.4

Q ss_pred             cccceeEEEEccCCCCccceEeeeecCCC-CCCCeEEEEEEEeecChhhhhhhcccCC--CCCCCCCCCccceEEEEEEE
Q psy2960          69 FSYLANKLVYNQHGTPLRVVTVENETLNS-VQKHEVVVKMLVAPVNPADINTIQGVYP--IKPTLPAVPGFEGVGEVVEV  145 (405)
Q Consensus        69 ~~~~~~a~~~~~~g~~~~~l~~~~~~~p~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~~~p~~lG~E~~G~V~~v  145 (405)
                      .|++||++++++++.+   +++++.|.|+ |++|||||||.++|||++|++.+.|.++  ....+|.++|||++|+|+++
T Consensus        12 ~~~~mka~~~~~~g~~---l~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~v   88 (359)
T 1h2b_A           12 GVERLKAARLHEYNKP---LRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEV   88 (359)
T ss_dssp             -----CEEEESSTTSC---CEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEE
T ss_pred             ChhhceEEEEecCCCC---cEEEEccCCCCCCCCEEEEEEEEEEecccchHHHhCCCccccCCCCCeecCcCceEEEEEE
Confidence            4678999999999854   8899999999 9999999999999999999999999764  12367999999999999999


Q ss_pred             cCCCCCCCCCCEEEecCC--------------------------CCCcccceEeecccceEEcCCCCChhhhc---cCCC
Q psy2960         146 GSDVSSLAVGDHVIPDTQ--------------------------HLGTWRNYGKFNHDVLMKVPKDIALTEIS---GITS  196 (405)
Q Consensus       146 G~~v~~~~~GdrV~~~~~--------------------------~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa---~~~~  196 (405)
                      |++|++|++||||++.+.                          .+|+|+||++++++.++++|+++++++||   ++++
T Consensus        89 G~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~l~~  168 (359)
T 1h2b_A           89 AEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDISREKLVEMAPLAD  168 (359)
T ss_dssp             CTTCCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEEECCTTCCHHHHHHTGGGGT
T ss_pred             CCCCCCCCCCCEEEeCCCCCCCCChhhhCcCcccCCCccccccCCCCcccceEEechHhEEECCCCCCHHHHhhccchhh
Confidence            999999999999987631                          35999999999999999999999999999   8899


Q ss_pred             cHHHHHHHHHhh-cCCCCCCEEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh-HH
Q psy2960         197 NPCTAYRMLKDY-NSLSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE-LR  273 (405)
Q Consensus       197 ~~~ta~~al~~~-~~~~~g~~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d-~~  273 (405)
                      +++|||+++... +++++|++|||+|+ |++|++++|+|+++ |++|++++++    +++++.++++|+++++|+++ +.
T Consensus       169 ~~~ta~~al~~~~~~~~~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~~----~~~~~~~~~lGa~~vi~~~~~~~  243 (359)
T 1h2b_A          169 AGITAYRAVKKAARTLYPGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVK----EEKLKLAERLGADHVVDARRDPV  243 (359)
T ss_dssp             HHHHHHHHHHHHHTTCCTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESS----HHHHHHHHHTTCSEEEETTSCHH
T ss_pred             hHHHHHHHHHhhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCC----HHHHHHHHHhCCCEEEeccchHH
Confidence            999999999876 89999999999999 99999999999999 9998888755    34578889999999998754 44


Q ss_pred             H-HhhhcCCCCCcEEEECCCch---hHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccH
Q psy2960         274 N-ISRDASIPKPKLALNCVGGN---SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKES  349 (405)
Q Consensus       274 ~-i~~~t~g~g~Dvvld~~g~~---~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~  349 (405)
                      + +++.+++.++|+||||+|++   .+..++++  ++|+++.+|.....  .++...++.+++++.|++...        
T Consensus       244 ~~v~~~~~g~g~Dvvid~~G~~~~~~~~~~~~~--~~G~~v~~g~~~~~--~~~~~~~~~~~~~i~g~~~~~--------  311 (359)
T 1h2b_A          244 KQVMELTRGRGVNVAMDFVGSQATVDYTPYLLG--RMGRLIIVGYGGEL--RFPTIRVISSEVSFEGSLVGN--------  311 (359)
T ss_dssp             HHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEE--EEEEEEECCCSSCC--CCCHHHHHHTTCEEEECCSCC--------
T ss_pred             HHHHHHhCCCCCcEEEECCCCchHHHHHHHhhc--CCCEEEEEeCCCCC--CCCHHHHHhCCcEEEEecCCC--------
Confidence            5 88888878999999999998   55667777  99999999965432  566666778999999987543        


Q ss_pred             HHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         350 AERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       350 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                         .+.++++++++++|++++.+ ++|+++++++||+.+.  +++..||+||++
T Consensus       312 ---~~~~~~~~~l~~~g~l~~~i-~~~~l~~~~~A~~~~~--~~~~~gKvvv~~  359 (359)
T 1h2b_A          312 ---YVELHELVTLALQGKVRVEV-DIHKLDEINDVLERLE--KGEVLGRAVLIP  359 (359)
T ss_dssp             ---HHHHHHHHHHHHTTSCCCCE-EEEEGGGHHHHHHHHH--TTCCSSEEEEEC
T ss_pred             ---HHHHHHHHHHHHcCCCcceE-EEEeHHHHHHHHHHHH--cCCCceEEEeeC
Confidence               34578899999999999988 9999999999999999  888889999975

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=100.00  E-value=1.8e-55  Score=417.93  Aligned_cols=311  Identities=21%  Similarity=0.312  Sum_probs=265.1

Q ss_pred             ccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhccc--CC--CCCCCCCCCccceEEEEEEE
Q psy2960          70 SYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGV--YP--IKPTLPAVPGFEGVGEVVEV  145 (405)
Q Consensus        70 ~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~--~~--~~~~~p~~lG~E~~G~V~~v  145 (405)
                      |++||+++++++|.+ +.+++++.|.|+|++|||||||.++|||++|++.+.|.  ++  ....+|.++|||++|+|+++
T Consensus         4 m~~Mka~~~~~~g~~-~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~v   82 (321)
T 3tqh_A            4 MKEMKAIQFDQFGPP-KVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIEL   82 (321)
T ss_dssp             -CEEEEEEESSSCSG-GGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSHHHHHHTTSCSBCCCCEEEEEEEEE
T ss_pred             cccceEEEEccCCCc-ceeEEEecCCCCCCCCEEEEEEEEEEcCHHHHHHhcCCccccccccCCCCCcccceeEEEEEEe
Confidence            578999999999887 56999999999999999999999999999999999882  11  12367999999999999999


Q ss_pred             cCCCCCCCCCCEEEecC---CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCC
Q psy2960         146 GSDVSSLAVGDHVIPDT---QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGA  222 (405)
Q Consensus       146 G~~v~~~~~GdrV~~~~---~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga  222 (405)
                      |++|++|++||||++..   ...|+|+||++++++.++++|+++++++||+++++++|||+++ +.+++++|++|||+||
T Consensus        83 G~~v~~~~~GdrV~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~vlV~Ga  161 (321)
T 3tqh_A           83 GSDVNNVNIGDKVMGIAGFPDHPCCYAEYVCASPDTIIQKLEKLSFLQAASLPTAGLTALQAL-NQAEVKQGDVVLIHAG  161 (321)
T ss_dssp             CTTCCSCCTTCEEEEECSTTTCCCCSBSEEEECGGGEEECCTTSCHHHHHHSHHHHHHHHHHH-HHTTCCTTCEEEESST
T ss_pred             CCCCCCCCCCCEEEEccCCCCCCCcceEEEEecHHHhccCCCCCCHHHHhhhhhHHHHHHHHH-HhcCCCCCCEEEEEcC
Confidence            99999999999999875   3469999999999999999999999999999999999999999 6699999999999998


Q ss_pred             CcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCCchhHHHHHHh
Q psy2960         223 NSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRT  302 (405)
Q Consensus       223 ~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~~~~~~~~~~  302 (405)
                      +|++|++++|+|+.+|++|++++++     ++++.++++|+++++|+++...+.+.  -.++|+||||+|++....++++
T Consensus       162 ~G~vG~~a~q~a~~~Ga~vi~~~~~-----~~~~~~~~lGa~~~i~~~~~~~~~~~--~~g~D~v~d~~g~~~~~~~~~~  234 (321)
T 3tqh_A          162 AGGVGHLAIQLAKQKGTTVITTASK-----RNHAFLKALGAEQCINYHEEDFLLAI--STPVDAVIDLVGGDVGIQSIDC  234 (321)
T ss_dssp             TSHHHHHHHHHHHHTTCEEEEEECH-----HHHHHHHHHTCSEEEETTTSCHHHHC--CSCEEEEEESSCHHHHHHHGGG
T ss_pred             CcHHHHHHHHHHHHcCCEEEEEecc-----chHHHHHHcCCCEEEeCCCcchhhhh--ccCCCEEEECCCcHHHHHHHHh
Confidence            8999999999999999999888732     23688899999999987653211111  1579999999999988888999


Q ss_pred             cccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHH
Q psy2960         303 LVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQ  382 (405)
Q Consensus       303 l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~  382 (405)
                      ++++|+++.+|......   ....+..+++++.+++...          ..+.++++++++++|++++.++++|++++++
T Consensus       235 l~~~G~iv~~g~~~~~~---~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~  301 (321)
T 3tqh_A          235 LKETGCIVSVPTITAGR---VIEVAKQKHRRAFGLLKQF----------NIEELHYLGKLVSEDKLRIEISRIFQLSEAV  301 (321)
T ss_dssp             EEEEEEEEECCSTTHHH---HHHHHHHTTCEEECCCCCC----------CHHHHHHHHHHHHTTSSCCCEEEEECGGGHH
T ss_pred             ccCCCEEEEeCCCCchh---hhhhhhhcceEEEEEecCC----------CHHHHHHHHHHHHCCCcccccccEEcHHHHH
Confidence            99999999998533211   1123456888888854321          1355889999999999999999999999999


Q ss_pred             HHHHHHhhhcCCCCceEEEEec
Q psy2960         383 EALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       383 ~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                      +||+.+.  +++..||+||+++
T Consensus       302 ~A~~~~~--~~~~~gKvvl~~~  321 (321)
T 3tqh_A          302 TAHELLE--TGHVRGKLVFKVR  321 (321)
T ss_dssp             HHHHHHH--TTCCCSEEEEECC
T ss_pred             HHHHHHH--cCCCCceEEEEeC
Confidence            9999999  8999999999874

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=100.00  E-value=6.3e-55  Score=418.34  Aligned_cols=307  Identities=19%  Similarity=0.229  Sum_probs=271.5

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCC-CCCCCCCCccceEEEEEEEcCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPI-KPTLPAVPGFEGVGEVVEVGSDVSS  151 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~p~~lG~E~~G~V~~vG~~v~~  151 (405)
                      ||++++++++++   +++++.|.|+|++|||||||.++|||++|++.+.|.++. ...+|.++|||++|+|+++|++|++
T Consensus         1 MkA~~~~~~g~~---l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~   77 (345)
T 3jv7_A            1 MKAVQYTEIGSE---PVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTG   77 (345)
T ss_dssp             CEEEEECSTTSC---CEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTTCCSCSSEECCSEEEEEEEEECTTCCS
T ss_pred             CeEEEEcCCCCc---eEEEEecCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCccCCCCCcccCcccEEEEEEECCCCCC
Confidence            899999999986   889999999999999999999999999999999997652 2468999999999999999999999


Q ss_pred             CCCCCEEEecCC-------------------------------CCCcccceEeec-ccceEEcCCCCChhhhccCCCcHH
Q psy2960         152 LAVGDHVIPDTQ-------------------------------HLGTWRNYGKFN-HDVLMKVPKDIALTEISGITSNPC  199 (405)
Q Consensus       152 ~~~GdrV~~~~~-------------------------------~~G~~a~~~~v~-~~~~~~iP~~~s~~~Aa~~~~~~~  199 (405)
                      |++||||++.+.                               .+|+|+||++++ ++.++++|+ +++++||+++++++
T Consensus        78 ~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~~p~-~~~~~aa~l~~~~~  156 (345)
T 3jv7_A           78 FGVGDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGSPGSMAEYMIVDSARHLVPIGD-LDPVAAAPLTDAGL  156 (345)
T ss_dssp             CCTTCEEEECCSCCCSSSHHHHTTCGGGCSSHHHHTCCCBTTTBCCSSBSEEEESCGGGEEECTT-CCHHHHGGGGTTTH
T ss_pred             CCCCCEEEEecCCCCCCChHHHCcCcCcCccccccccccCCcCCCceeeEEEEecchhceEeCCC-CCHHHhhhhhhhHH
Confidence            999999997521                               369999999999 999999999 99999999999999


Q ss_pred             HHHHHHHh-hcCCCCCCEEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh-HHH-H
Q psy2960         200 TAYRMLKD-YNSLSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE-LRN-I  275 (405)
Q Consensus       200 ta~~al~~-~~~~~~g~~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d-~~~-i  275 (405)
                      |||+++.+ .+++++|++|||+|+ |++|++++|+|+++ |++|+++.++    +++++.++++|+++++++++ +.+ +
T Consensus       157 ta~~~l~~~~~~~~~g~~vlv~Ga-G~vG~~a~qla~~~g~~~Vi~~~~~----~~~~~~~~~lGa~~~i~~~~~~~~~v  231 (345)
T 3jv7_A          157 TPYHAISRVLPLLGPGSTAVVIGV-GGLGHVGIQILRAVSAARVIAVDLD----DDRLALAREVGADAAVKSGAGAADAI  231 (345)
T ss_dssp             HHHHHHHTTGGGCCTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESC----HHHHHHHHHTTCSEEEECSTTHHHHH
T ss_pred             HHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCC----HHHHHHHHHcCCCEEEcCCCcHHHHH
Confidence            99999988 458999999999998 99999999999999 6778877644    45688999999999998654 555 8


Q ss_pred             hhhcCCCCCcEEEECCCch-hHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHH
Q psy2960         276 SRDASIPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKS  354 (405)
Q Consensus       276 ~~~t~g~g~Dvvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~  354 (405)
                      ++.|++.++|+||||+|++ .+..++++++++|+++.+|........++. .++.+++++.+++...           .+
T Consensus       232 ~~~t~g~g~d~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~-~~~~~~~~i~g~~~~~-----------~~  299 (345)
T 3jv7_A          232 RELTGGQGATAVFDFVGAQSTIDTAQQVVAVDGHISVVGIHAGAHAKVGF-FMIPFGASVVTPYWGT-----------RS  299 (345)
T ss_dssp             HHHHGGGCEEEEEESSCCHHHHHHHHHHEEEEEEEEECSCCTTCCEEEST-TTSCTTCEEECCCSCC-----------HH
T ss_pred             HHHhCCCCCeEEEECCCCHHHHHHHHHHHhcCCEEEEECCCCCCCCCcCH-HHHhCCCEEEEEecCC-----------HH
Confidence            8999888999999999997 667889999999999999966543445554 6778999999987654           35


Q ss_pred             HHHHHHHHHHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         355 MMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       355 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      .++++++++++|++++ ++++|+++++++||+.+.  +++..||+||++
T Consensus       300 ~~~~~~~l~~~g~l~~-~~~~~~l~~~~~A~~~~~--~~~~~Gkvvv~p  345 (345)
T 3jv7_A          300 ELMEVVALARAGRLDI-HTETFTLDEGPAAYRRLR--EGSIRGRGVVVP  345 (345)
T ss_dssp             HHHHHHHHHHTTCCCC-CEEEECSTTHHHHHHHHH--HTCCSSEEEECC
T ss_pred             HHHHHHHHHHcCCCce-EEEEEcHHHHHHHHHHHH--cCCCceeEEeCC
Confidence            5788999999999998 568999999999999999  899999999974

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=2.5e-54  Score=418.86  Aligned_cols=312  Identities=21%  Similarity=0.327  Sum_probs=267.2

Q ss_pred             CcccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcC
Q psy2960          68 GFSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGS  147 (405)
Q Consensus        68 ~~~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~  147 (405)
                      ..|++||++++.+++.+   +++++.|.|+|+++||||||.++|||++|++.+.|. +. ..+|.++|||++|+|+++|+
T Consensus         4 ~~p~~mka~~~~~~g~~---l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~-~~-~~~P~v~GhE~~G~V~~vG~   78 (376)
T 1e3i_A            4 GKVIKCKAAIAWKTGSP---LCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPK-KK-ALFPVVLGHECAGIVESVGP   78 (376)
T ss_dssp             TSCEEEEEEEBCSTTSC---CEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTT-SC-CCSSBCCCCEEEEEEEEECT
T ss_pred             CCChheeEEEEecCCCC---eEEEEeeCCCCCCCeEEEEEeEEeEchhhHHHhcCC-CC-CCCCcccCccccEEEEEECC
Confidence            46889999999998865   889999999999999999999999999999999986 32 36799999999999999999


Q ss_pred             CCCCCCCCCEEEecCC---------------------------------------------------CCCcccceEeecc
Q psy2960         148 DVSSLAVGDHVIPDTQ---------------------------------------------------HLGTWRNYGKFNH  176 (405)
Q Consensus       148 ~v~~~~~GdrV~~~~~---------------------------------------------------~~G~~a~~~~v~~  176 (405)
                      +|++|++||||++.+.                                                   ..|+|+||+++++
T Consensus        79 ~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~  158 (376)
T 1e3i_A           79 GVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSE  158 (376)
T ss_dssp             TCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEG
T ss_pred             CCccCCCCCEEEECCcCCCCCCccccCCCcccCcCcCccccccccccccccCccccccCCcccccccCCccceeEEEecc
Confidence            9999999999997521                                                   1389999999999


Q ss_pred             cceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHH
Q psy2960         177 DVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLK  255 (405)
Q Consensus       177 ~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~  255 (405)
                      +.++++|+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+++|+ +|+++.++++    ++
T Consensus       159 ~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~----~~  233 (376)
T 1e3i_A          159 ANLARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGE----KF  233 (376)
T ss_dssp             GGEEECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG----GH
T ss_pred             ccEEECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHH----HH
Confidence            9999999999999999999999999999988899999999999997 9999999999999999 6777765543    36


Q ss_pred             HHHHHcCCcEEeChhh----HHH-HhhhcCCCCCcEEEECCCc-hhHHHHHHhcccC-CEEEEEeccCCCCcccCccccc
Q psy2960         256 SYLKSLGADYVFTEEE----LRN-ISRDASIPKPKLALNCVGG-NSATNLLRTLVSK-GVMVTYGGMSREPVQIPTSAFI  328 (405)
Q Consensus       256 ~~~~~lg~~~v~~~~d----~~~-i~~~t~g~g~Dvvld~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~  328 (405)
                      +.++++|+++++|+++    +.+ +++.+++ ++|+||||+|+ +.+..++++++++ |+++.+|. ......++...++
T Consensus       234 ~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~-g~Dvvid~~G~~~~~~~~~~~l~~~~G~iv~~G~-~~~~~~~~~~~~~  311 (376)
T 1e3i_A          234 PKAKALGATDCLNPRELDKPVQDVITELTAG-GVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGA-KVDEMTIPTVDVI  311 (376)
T ss_dssp             HHHHHTTCSEEECGGGCSSCHHHHHHHHHTS-CBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCC-SSSEEEEEHHHHH
T ss_pred             HHHHHhCCcEEEccccccchHHHHHHHHhCC-CccEEEECCCCHHHHHHHHHHhhcCCCEEEEECC-CCCccccCHHHhh
Confidence            7889999999998763    556 8888876 99999999998 5567889999999 99999996 3333345555566


Q ss_pred             ccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccC--CcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         329 FKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       329 ~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      .++ ++.|+++..+.        ..+.++++++++++|++++  .++++|+|+++++||+.+.  +++ .+|+||++
T Consensus       312 ~~~-~i~g~~~~~~~--------~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~--~~~-~~Kvvi~~  376 (376)
T 1e3i_A          312 LGR-SINGTFFGGWK--------SVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAIDLMK--EGK-SIRTILTF  376 (376)
T ss_dssp             TTC-EEEECSGGGCC--------HHHHHHHHHHHHHTTSSCGGGGEEEEEEGGGHHHHHHHHH--TTC-CSEEEEEC
T ss_pred             ccC-eEEEEecCCCC--------cHHHHHHHHHHHHcCCCCcHHhEeeeecHHHHHHHHHHHh--cCC-cceEEEeC
Confidence            778 99988654321        1356888999999999874  5789999999999999998  666 57999975

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=3.8e-54  Score=417.19  Aligned_cols=312  Identities=21%  Similarity=0.307  Sum_probs=266.9

Q ss_pred             CCcccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEc
Q psy2960          67 RGFSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVG  146 (405)
Q Consensus        67 ~~~~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG  146 (405)
                      ...|++||++++++++++   +++++.|.|+|+++||||||.++|||++|++.+.|.++  ..+|.++|||++|+|+++|
T Consensus         4 ~~~p~~mka~~~~~~g~~---l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~P~v~GhE~~G~V~~vG   78 (373)
T 1p0f_A            4 AGKDITCKAAVAWEPHKP---LSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP--SKFPVILGHEAVGVVESIG   78 (373)
T ss_dssp             TTSCEEEEEEEBSSTTSC---CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC--CCSSBCCCCCEEEEEEEEC
T ss_pred             cCCcceeEEEEEEcCCCC---eeEEEeeCCCCCCCeEEEEEeEEeecchhHHHhcCCCC--CCCCcccCcCceEEEEEEC
Confidence            346889999999998865   88999999999999999999999999999999999766  3679999999999999999


Q ss_pred             CCCCCCCCCCEEEecCC-----------------------------------------------CCCcccceEeecccce
Q psy2960         147 SDVSSLAVGDHVIPDTQ-----------------------------------------------HLGTWRNYGKFNHDVL  179 (405)
Q Consensus       147 ~~v~~~~~GdrV~~~~~-----------------------------------------------~~G~~a~~~~v~~~~~  179 (405)
                      ++|++|++||||++.+.                                               ..|+|+||++++++.+
T Consensus        79 ~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~  158 (373)
T 1p0f_A           79 AGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAV  158 (373)
T ss_dssp             TTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSE
T ss_pred             CCCCccCCCCEEEECCCCCCCCChhhcCCCcCcCcCCCcccccccccCCccccccCCcccccccCCccceeEEEEchhhE
Confidence            99999999999997531                                               1489999999999999


Q ss_pred             EEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHH
Q psy2960         180 MKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYL  258 (405)
Q Consensus       180 ~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~  258 (405)
                      +++|++++++ ||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+++|+ +|+++.++++    +++.+
T Consensus       159 ~~iP~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~----~~~~a  232 (373)
T 1p0f_A          159 AKIDPKAPLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKD----KFPKA  232 (373)
T ss_dssp             EEECTTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGG----GHHHH
T ss_pred             EECCCCCChh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCHH----HHHHH
Confidence            9999999999 99999999999999988899999999999997 9999999999999999 6777765543    36788


Q ss_pred             HHcCCcEEeChhh----HHH-HhhhcCCCCCcEEEECCCc-hhHHHHHHhcccC-CEEEEEeccCC-CCcccCccccccc
Q psy2960         259 KSLGADYVFTEEE----LRN-ISRDASIPKPKLALNCVGG-NSATNLLRTLVSK-GVMVTYGGMSR-EPVQIPTSAFIFK  330 (405)
Q Consensus       259 ~~lg~~~v~~~~d----~~~-i~~~t~g~g~Dvvld~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~k  330 (405)
                      +++|+++++|+++    +.+ +++.|++ ++|+||||+|+ +.+..++++++++ |+++.+|.... ....++...++.+
T Consensus       233 ~~lGa~~vi~~~~~~~~~~~~i~~~t~g-g~Dvvid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~  311 (373)
T 1p0f_A          233 IELGATECLNPKDYDKPIYEVICEKTNG-GVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLLTG  311 (373)
T ss_dssp             HHTTCSEEECGGGCSSCHHHHHHHHTTS-CBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHHHTT
T ss_pred             HHcCCcEEEecccccchHHHHHHHHhCC-CCCEEEECCCCHHHHHHHHHHHhcCCCEEEEEccCCCCCccccCHHHhccC
Confidence            9999999998763    566 8888876 99999999998 5667889999999 99999996543 2334555556667


Q ss_pred             CeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccC--CcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         331 DITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       331 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      + ++.|+++..+.         .+.++++++++++|++++  .++++|+++++++||+.+.  +++ .+|+||++
T Consensus       312 ~-~i~g~~~~~~~---------~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~--~~~-~~kvvi~~  373 (373)
T 1p0f_A          312 R-SLKGSVFGGFK---------GEEVSRLVDDYMKKKINVNFLVSTKLTLDQINKAFELLS--SGQ-GVRSIMIY  373 (373)
T ss_dssp             C-EEEECSGGGCC---------GGGHHHHHHHHHTTSSCGGGGEEEEECGGGHHHHHHHTT--TSS-CSEEEEEC
T ss_pred             c-eEEeeccCCcC---------HHHHHHHHHHHHcCCCCchheEEEEeeHHHHHHHHHHHH--CCC-cceEEEeC
Confidence            7 99988654321         134788899999999874  4689999999999999998  666 47999975

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=6.8e-55  Score=417.72  Aligned_cols=313  Identities=23%  Similarity=0.315  Sum_probs=274.3

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||++++++++.+ +.+++++.|.|+|++|||||||.++|||++|++.+.|.++....+|.++|||++|+|+++|++|++|
T Consensus         1 Mka~~~~~~g~~-~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~   79 (343)
T 2eih_A            1 MRAVVMRARGGP-EVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAVGPGVEGF   79 (343)
T ss_dssp             CEEEEECSSSSG-GGEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSSTTCCSSEECCSEEEEEEEEECSSCCSC
T ss_pred             CeEEEEecCCCC-ceEEEEecCCCCCCCCEEEEEEEEEEeCHHHHHHhcCCCCCCCCCCcccccceEEEEEEECCCCCCC
Confidence            899999999876 4588999999999999999999999999999999999776434679999999999999999999999


Q ss_pred             CCCCEEEec--------------------------CCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHH
Q psy2960         153 AVGDHVIPD--------------------------TQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLK  206 (405)
Q Consensus       153 ~~GdrV~~~--------------------------~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~  206 (405)
                      ++||||+..                          ....|+|+||++++++.++++|+++++++||++++++.|||+++.
T Consensus        80 ~vGdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~al~  159 (343)
T 2eih_A           80 APGDEVVINPGLSCGRCERCLAGEDNLCPRYQILGEHRHGTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLTAWQMVV  159 (343)
T ss_dssp             CTTCEEEECCEECCSCSHHHHTTCGGGCTTCEETTTSSCCSSBSEEEEEGGGEEECCTTSCHHHHHHSHHHHHHHHHHHT
T ss_pred             CCCCEEEECCCCCcccchhhccCcccccccccccCcCCCccceeEEEeChHHeEECCCCCCHHHHhhchhhHHHHHHHHH
Confidence            999999932                          123599999999999999999999999999999999999999998


Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChh--hHHH-HhhhcCCCC
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIPK  283 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~--d~~~-i~~~t~g~g  283 (405)
                      ..+++++|++|||+|++|++|++++|+|+.+|++|+++.+++    ++++.++++|+++++|++  ++.+ +.+.+++.+
T Consensus       160 ~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~----~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~  235 (343)
T 2eih_A          160 DKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSE----DKLRRAKALGADETVNYTHPDWPKEVRRLTGGKG  235 (343)
T ss_dssp             TTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSH----HHHHHHHHHTCSEEEETTSTTHHHHHHHHTTTTC
T ss_pred             HhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH----HHHHHHHhcCCCEEEcCCcccHHHHHHHHhCCCC
Confidence            877999999999999999999999999999999999887553    346777889999998864  3555 777777779


Q ss_pred             CcEEEECCCchhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHH
Q psy2960         284 PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMM  363 (405)
Q Consensus       284 ~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (405)
                      +|++||++|++....++++++++|+++.+|........++...++.+++++.|++...           .+.++++++++
T Consensus       236 ~d~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~-----------~~~~~~~~~l~  304 (343)
T 2eih_A          236 ADKVVDHTGALYFEGVIKATANGGRIAIAGASSGYEGTLPFAHVFYRQLSILGSTMAS-----------KSRLFPILRFV  304 (343)
T ss_dssp             EEEEEESSCSSSHHHHHHHEEEEEEEEESSCCCSCCCCCCTTHHHHTTCEEEECCSCC-----------GGGHHHHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHhhccCCEEEEEecCCCCcCccCHHHHHhCCcEEEEecCcc-----------HHHHHHHHHHH
Confidence            9999999998888889999999999999996554333466667778999999976432           24478899999


Q ss_pred             HcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         364 RTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       364 ~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      ++|++++.++++|+++++++||+.+.  +++..||+||++
T Consensus       305 ~~g~l~~~i~~~~~l~~~~~A~~~~~--~~~~~gKvvv~~  342 (343)
T 2eih_A          305 EEGKLKPVVGQVLPLEAAAEGHRLLE--ERRVFGKVVLQV  342 (343)
T ss_dssp             HHTSSCCCEEEEEEGGGHHHHHHHHH--TTCSSSEEEEEC
T ss_pred             HcCCCCCceeEEeeHHHHHHHHHHHH--cCCCceEEEEec
Confidence            99999998999999999999999999  888899999986

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-54  Score=416.33  Aligned_cols=314  Identities=18%  Similarity=0.306  Sum_probs=273.3

Q ss_pred             cccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCC
Q psy2960          69 FSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSD  148 (405)
Q Consensus        69 ~~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~  148 (405)
                      +|.+||++++++++.+   +++++.|.|+|+++||||||.++|||++|++.+.|.++....+|.++|||++|+|+++|++
T Consensus         2 ~p~~mka~~~~~~g~~---l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~   78 (347)
T 2hcy_A            2 IPETQKGVIFYESHGK---LEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMGEN   78 (347)
T ss_dssp             CCSEEEEEEESSTTCC---CEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSEECCCEEEEEEEEECTT
T ss_pred             CCcccEEEEEeCCCCC---CEEEEeeCCCCCCCEEEEEEEEEEechhHHHHhcCCCCCCCCCCcccCccceEEEEEECCC
Confidence            6789999999999854   8899999999999999999999999999999999977644468999999999999999999


Q ss_pred             CCCCCCCCEEEecC---------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHH
Q psy2960         149 VSSLAVGDHVIPDT---------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTA  201 (405)
Q Consensus       149 v~~~~~GdrV~~~~---------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta  201 (405)
                      |++|++||||++.+                           ..+|+|+||++++++.++++|+++++++||+++++++||
T Consensus        79 v~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta  158 (347)
T 2hcy_A           79 VKGWKIGDYAGIKWLNGSCMACEYCELGNESNCPHADLSGYTHDGSFQQYATADAVQAAHIPQGTDLAQVAPILCAGITV  158 (347)
T ss_dssp             CCSCCTTCEEEECSEEECCSSSTTTTTTCGGGCTTCEEBTTTBCCSSBSEEEEETTTSEEECTTCCHHHHGGGGTHHHHH
T ss_pred             CCCCcCCCEEEEecCCCCCCCChhhhCCCcccCccccccccCCCCcceeEEEeccccEEECCCCCCHHHHHHHhhhHHHH
Confidence            99999999998632                           125999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChh---hHHH-Hhh
Q psy2960         202 YRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE---ELRN-ISR  277 (405)
Q Consensus       202 ~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~---d~~~-i~~  277 (405)
                      |+++.. .++++|++|||+|++|++|++++|+|+..|++|+++.+++++    ++.++++|+++++|..   ++.+ +.+
T Consensus       159 ~~~l~~-~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~----~~~~~~~g~~~~~d~~~~~~~~~~~~~  233 (347)
T 2hcy_A          159 YKALKS-ANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGK----EELFRSIGGEVFIDFTKEKDIVGAVLK  233 (347)
T ss_dssp             HHHHHT-TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTH----HHHHHHTTCCEEEETTTCSCHHHHHHH
T ss_pred             HHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHH----HHHHHHcCCceEEecCccHhHHHHHHH
Confidence            999977 589999999999999999999999999999999988866443    5677889999988754   3555 777


Q ss_pred             hcCCCCCcEEEECCCc-hhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHH
Q psy2960         278 DASIPKPKLALNCVGG-NSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMM  356 (405)
Q Consensus       278 ~t~g~g~Dvvld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~  356 (405)
                      .+.+ ++|++||++|. +.+..++++|+++|+++.+|........++...++.+++++.|++...           .+.+
T Consensus       234 ~~~~-~~D~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~-----------~~~~  301 (347)
T 2hcy_A          234 ATDG-GAHGVINVSVSEAAIEASTRYVRANGTTVLVGMPAGAKCCSDVFNQVVKSISIVGSYVGN-----------RADT  301 (347)
T ss_dssp             HHTS-CEEEEEECSSCHHHHHHHTTSEEEEEEEEECCCCTTCEEEEEHHHHHHTTCEEEECCCCC-----------HHHH
T ss_pred             HhCC-CCCEEEECCCcHHHHHHHHHHHhcCCEEEEEeCCCCCCCCCCHHHHhhCCcEEEEccCCC-----------HHHH
Confidence            7777 89999999998 566778999999999999996554334455556778999999986543           2457


Q ss_pred             HHHHHHHHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEecC
Q psy2960         357 NELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ  405 (405)
Q Consensus       357 ~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~~~  405 (405)
                      +++++++++|++++. +++|+++++++||+.+.  +++..||+||++++
T Consensus       302 ~~~~~l~~~g~l~~~-~~~~~l~~~~~A~~~~~--~~~~~gKvvv~~~~  347 (347)
T 2hcy_A          302 REALDFFARGLVKSP-IKVVGLSTLPEIYEKME--KGQIVGRYVVDTSK  347 (347)
T ss_dssp             HHHHHHHHTTSCCCC-EEEEEGGGHHHHHHHHH--TTCCSSEEEEESCC
T ss_pred             HHHHHHHHhCCCccc-eEEEcHHHHHHHHHHHH--cCCcceeEEEecCC
Confidence            889999999999985 67999999999999999  88889999999874

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=7.1e-55  Score=418.41  Aligned_cols=305  Identities=18%  Similarity=0.277  Sum_probs=266.2

Q ss_pred             cccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCC
Q psy2960          69 FSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSD  148 (405)
Q Consensus        69 ~~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~  148 (405)
                      |+++||++++.+++++   +++++.|.|+|++|||||||.++|||++|++.+.|.++. ..+|.++|||++|+|+++|++
T Consensus         1 M~m~mka~~~~~~~~~---l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~E~~G~V~~vG~~   76 (348)
T 3two_A            1 MRVQSKGFAIFSKDEH---FKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKE-GIYPMIPGHEIAGIIKEVGKG   76 (348)
T ss_dssp             CCEEEEEEEBCSTTSC---CEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTSSSC-CCSSBCCCCCEEEEEEEECTT
T ss_pred             CceEEEEEEEccCCCC---CeEEEeeCCCCCCCeEEEEEEEeeecccchhhhcCCCCC-CCCCeecCcceeEEEEEECCC
Confidence            3578999999998765   899999999999999999999999999999999998764 368999999999999999999


Q ss_pred             CCCCCCCCEEEecCC------------------------------------CCCcccceEeecccceEEcCCCCChhhhc
Q psy2960         149 VSSLAVGDHVIPDTQ------------------------------------HLGTWRNYGKFNHDVLMKVPKDIALTEIS  192 (405)
Q Consensus       149 v~~~~~GdrV~~~~~------------------------------------~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa  192 (405)
                      |++|++||||++.+.                                    ..|+|+||++++++.++++|+++++++||
T Consensus        77 v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~c~~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa  156 (348)
T 3two_A           77 VKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYDCLDSFHDNEPHMGGYSNNIVVDENYVISVDKNAPLEKVA  156 (348)
T ss_dssp             CCSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSSEEGGGTTEECCCSSBSEEEEEGGGCEECCTTSCHHHHG
T ss_pred             CCCCCCCCEEEEeCCcCCCCCChhHhCCCcccCcccccccccccccccCCcCCccccceEEechhhEEECCCCCCHHHhh
Confidence            999999999986321                                    12999999999999999999999999999


Q ss_pred             cCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhH
Q psy2960         193 GITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEEL  272 (405)
Q Consensus       193 ~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~  272 (405)
                      ++++++.|||+++.. .++++|++|||+|+ |++|++++|+|+++|++|+++++++++    ++.++++|+++++ . +.
T Consensus       157 ~l~~~~~ta~~~l~~-~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~----~~~~~~lGa~~v~-~-~~  228 (348)
T 3two_A          157 PLLCAGITTYSPLKF-SKVTKGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHK----KQDALSMGVKHFY-T-DP  228 (348)
T ss_dssp             GGGTHHHHHHHHHHH-TTCCTTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSSTT----HHHHHHTTCSEEE-S-SG
T ss_pred             hhhhhHHHHHHHHHh-cCCCCCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHH----HHHHHhcCCCeec-C-CH
Confidence            999999999999976 69999999999998 999999999999999999998877654    6788999999998 2 22


Q ss_pred             HHHhhhcCCCCCcEEEECCCch-hHHHHHHhcccCCEEEEEeccCCCCcc-cCccccc-ccCeEEEEEecchhhhhhccH
Q psy2960         273 RNISRDASIPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQ-IPTSAFI-FKDITLRGHWMTRWQKENKES  349 (405)
Q Consensus       273 ~~i~~~t~g~g~Dvvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~-~~~~~~~-~k~~~~~g~~~~~~~~~~~~~  349 (405)
                      +.+.     .++|+||||+|++ .+..++++++++|+++.+|.....+.. ++...++ .+++++.|++...        
T Consensus       229 ~~~~-----~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~--------  295 (348)
T 3two_A          229 KQCK-----EELDFIISTIPTHYDLKDYLKLLTYNGDLALVGLPPVEVAPVLSVFDFIHLGNRKVYGSLIGG--------  295 (348)
T ss_dssp             GGCC-----SCEEEEEECCCSCCCHHHHHTTEEEEEEEEECCCCCGGGCCEEEHHHHHHTCSCEEEECCSCC--------
T ss_pred             HHHh-----cCCCEEEECCCcHHHHHHHHHHHhcCCEEEEECCCCCCCcccCCHHHHHhhCCeEEEEEecCC--------
Confidence            2222     2899999999998 788899999999999999965423333 5555666 8999999988754        


Q ss_pred             HHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEec
Q psy2960         350 AERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       350 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                         .+.++++++++++|++++. +++|+++++++||+.+.  +++..||+||+++
T Consensus       296 ---~~~~~~~~~l~~~g~l~~~-~~~~~l~~~~~A~~~~~--~~~~~gKvVi~~~  344 (348)
T 3two_A          296 ---IKETQEMVDFSIKHNIYPE-IDLILGKDIDTAYHNLT--HGKAKFRYVIDMK  344 (348)
T ss_dssp             ---HHHHHHHHHHHHHTTCCCC-EEEECGGGHHHHHHHHH--TTCCCSEEEEEGG
T ss_pred             ---HHHHHHHHHHHHhCCCCce-EEEEEHHHHHHHHHHHH--cCCCceEEEEecC
Confidence               2447889999999999985 58999999999999999  8899999999986

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.7e-54  Score=418.36  Aligned_cols=313  Identities=20%  Similarity=0.279  Sum_probs=268.2

Q ss_pred             CcccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhh-hhcccCCCCCCCCCCCccceEEEEEEEc
Q psy2960          68 GFSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADIN-TIQGVYPIKPTLPAVPGFEGVGEVVEVG  146 (405)
Q Consensus        68 ~~~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~-~~~g~~~~~~~~p~~lG~E~~G~V~~vG  146 (405)
                      ..|++||++++++++++   +++++.|.|+|+++||||||.++|||++|++ .+.|.++  ..+|.++|||++|+|+++|
T Consensus         4 ~~~~~mka~~~~~~~~~---l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~--~~~P~v~GhE~~G~V~~vG   78 (374)
T 1cdo_A            4 GKVIKCKAAVAWEANKP---LVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK--DGFPVVLGHEGAGIVESVG   78 (374)
T ss_dssp             TSCEEEEEEEBCSTTSC---CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCT--TSCSEECCCCEEEEEEEEC
T ss_pred             CCcceeEEEEEecCCCC---eEEEEeeCCCCCCCEEEEEEeEEeechhhHHHHhCCCCC--CCCCcccCccceEEEEEEC
Confidence            35789999999998865   8899999999999999999999999999999 8998765  3679999999999999999


Q ss_pred             CCCCCCCCCCEEEecCC-----------------------------------------------CCCcccceEeecccce
Q psy2960         147 SDVSSLAVGDHVIPDTQ-----------------------------------------------HLGTWRNYGKFNHDVL  179 (405)
Q Consensus       147 ~~v~~~~~GdrV~~~~~-----------------------------------------------~~G~~a~~~~v~~~~~  179 (405)
                      ++|++|++||||++.+.                                               ..|+|+||++++++.+
T Consensus        79 ~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~  158 (374)
T 1cdo_A           79 PGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAV  158 (374)
T ss_dssp             TTCCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGE
T ss_pred             CCCccCCCCCEEEeCCCCCCCCChhhcCCCcCcCCCcccccccccccCCccccccCCcccccccCCccceeEEEEchhhe
Confidence            99999999999997531                                               1389999999999999


Q ss_pred             EEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHH
Q psy2960         180 MKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYL  258 (405)
Q Consensus       180 ~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~  258 (405)
                      +++|+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+++|+ +|+++.++++    +++.+
T Consensus       159 ~~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~----~~~~~  233 (374)
T 1cdo_A          159 AKIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPD----KFEKA  233 (374)
T ss_dssp             EECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG----GHHHH
T ss_pred             EECCCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCHH----HHHHH
Confidence            9999999999999999999999999988899999999999997 9999999999999999 6777765543    36788


Q ss_pred             HHcCCcEEeChhh----HHH-HhhhcCCCCCcEEEECCCc-hhHHHHHHhcccC-CEEEEEeccCCCCcccCcccccccC
Q psy2960         259 KSLGADYVFTEEE----LRN-ISRDASIPKPKLALNCVGG-NSATNLLRTLVSK-GVMVTYGGMSREPVQIPTSAFIFKD  331 (405)
Q Consensus       259 ~~lg~~~v~~~~d----~~~-i~~~t~g~g~Dvvld~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~k~  331 (405)
                      +++|+++++|+++    +.+ +++.+++ ++|+||||+|+ +.+..++++++++ |+++.+|........++...++.++
T Consensus       234 ~~lGa~~vi~~~~~~~~~~~~~~~~~~~-g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~  312 (374)
T 1cdo_A          234 KVFGATDFVNPNDHSEPISQVLSKMTNG-GVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPIQLIAGR  312 (374)
T ss_dssp             HHTTCCEEECGGGCSSCHHHHHHHHHTS-CBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSSSCEEECHHHHHTTC
T ss_pred             HHhCCceEEeccccchhHHHHHHHHhCC-CCCEEEECCCCHHHHHHHHHHhhcCCcEEEEEcCCCCCCcccCHHHHhcCC
Confidence            8999999998763    556 8888876 99999999998 4567889999999 9999999654333445555566677


Q ss_pred             eEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccC--CcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         332 ITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       332 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                       ++.|+++..+.        ..+.++++++++++|++++  .++++|+++++++||+.+.  +++. +|+||++
T Consensus       313 -~i~g~~~~~~~--------~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~--~~~~-~kvvi~~  374 (374)
T 1cdo_A          313 -TWKGSMFGGFK--------GKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDAIDLMK--HGKC-IRTVLSL  374 (374)
T ss_dssp             -EEEECSGGGCC--------HHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHH--TTCC-SEEEEEC
T ss_pred             -eEEEEecCCCC--------cHHHHHHHHHHHHcCCCChHHheeeEecHHHHHHHHHHHH--CCCe-eEEEEeC
Confidence             99998654321        1345888999999999884  4689999999999999998  7764 7999975

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=7.8e-55  Score=416.88  Aligned_cols=308  Identities=24%  Similarity=0.353  Sum_probs=269.3

Q ss_pred             ceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCC
Q psy2960          72 LANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSS  151 (405)
Q Consensus        72 ~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~  151 (405)
                      +||++++++++.+   +++++.|.|+|++|||||||.++|||++|++.+.|.++..+.+|.++|||++|+|+++|++|++
T Consensus         2 ~MkA~~~~~~g~~---l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~G~E~~G~V~~vG~~v~~   78 (340)
T 3s2e_A            2 MMKAAVVRAFGAP---LTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGYVSAVGSGVSR   78 (340)
T ss_dssp             EEEEEEBCSTTSC---CEEEEEECCCCCTTCEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECSSCCS
T ss_pred             ceEEEEEecCCCC---CEEEEccCCCCCCCeEEEEEEEeccCHHHHHHHcCCCCCCCCCCcccCCcceEEEEEECCCCCc
Confidence            6999999998876   8999999999999999999999999999999999988765678999999999999999999999


Q ss_pred             CCCCCEEEecC---------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHH
Q psy2960         152 LAVGDHVIPDT---------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRM  204 (405)
Q Consensus       152 ~~~GdrV~~~~---------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~a  204 (405)
                      |++||||+...                           ..+|+|+||++++++.++++|+++++++||++++++.|||++
T Consensus        79 ~~vGdrV~~~~~~~~cg~C~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~  158 (340)
T 3s2e_A           79 VKEGDRVGVPWLYSACGYCEHCLQGWETLCEKQQNTGYSVNGGYGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTVYKG  158 (340)
T ss_dssp             CCTTCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSEECCTTSCHHHHGGGGTHHHHHHHH
T ss_pred             CCCCCEEEecCCCCCCCCChHHhCcCcccCccccccCCCCCCcceeEEEechHHEEECCCCCCHHHhhcccchhHHHHHH
Confidence            99999995310                           235999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCC
Q psy2960         205 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASI  281 (405)
Q Consensus       205 l~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g  281 (405)
                      +.. +++++|++|||+|+ |++|++++|+|+++|++|+++.++    +++++.++++|+++++|+++  +.+ +.+ +.+
T Consensus       159 l~~-~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~----~~~~~~~~~lGa~~~i~~~~~~~~~~~~~-~~g  231 (340)
T 3s2e_A          159 LKV-TDTRPGQWVVISGI-GGLGHVAVQYARAMGLRVAAVDID----DAKLNLARRLGAEVAVNARDTDPAAWLQK-EIG  231 (340)
T ss_dssp             HHT-TTCCTTSEEEEECC-STTHHHHHHHHHHTTCEEEEEESC----HHHHHHHHHTTCSEEEETTTSCHHHHHHH-HHS
T ss_pred             HHH-cCCCCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCC----HHHHHHHHHcCCCEEEeCCCcCHHHHHHH-hCC
Confidence            954 79999999999998 999999999999999999988755    34578899999999998754  555 666 444


Q ss_pred             CCCcEEEECCCch-hHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHH
Q psy2960         282 PKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELT  360 (405)
Q Consensus       282 ~g~Dvvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  360 (405)
                       ++|+|||++|+. .+..++++++++|+++.+|... .+..++...++.+++++.|++...           .+.+++++
T Consensus       232 -~~d~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~-~~~~~~~~~~~~~~~~i~g~~~~~-----------~~~~~~~~  298 (340)
T 3s2e_A          232 -GAHGVLVTAVSPKAFSQAIGMVRRGGTIALNGLPP-GDFGTPIFDVVLKGITIRGSIVGT-----------RSDLQESL  298 (340)
T ss_dssp             -SEEEEEESSCCHHHHHHHHHHEEEEEEEEECSCCS-SEEEEEHHHHHHTTCEEEECCSCC-----------HHHHHHHH
T ss_pred             -CCCEEEEeCCCHHHHHHHHHHhccCCEEEEeCCCC-CCCCCCHHHHHhCCeEEEEEecCC-----------HHHHHHHH
Confidence             899999999864 5567899999999999998544 234455566778999999987653           34588899


Q ss_pred             HHHHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEecC
Q psy2960         361 EMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ  405 (405)
Q Consensus       361 ~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~~~  405 (405)
                      +++++|++++. ++.|+++++++||+.+.  +++..||+||++++
T Consensus       299 ~l~~~g~l~~~-~~~~~l~~~~~A~~~~~--~~~~~Gkvvv~~~~  340 (340)
T 3s2e_A          299 DFAAHGDVKAT-VSTAKLDDVNDVFGRLR--EGKVEGRVVLDFSR  340 (340)
T ss_dssp             HHHHTTSCCCC-EEEECGGGHHHHHHHHH--TTCCCSEEEEECCC
T ss_pred             HHHHhCCCCce-EEEEeHHHHHHHHHHHH--cCCCceEEEEecCC
Confidence            99999999985 56789999999999999  89999999999864

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=3.5e-54  Score=417.53  Aligned_cols=313  Identities=21%  Similarity=0.298  Sum_probs=268.1

Q ss_pred             cccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCC
Q psy2960          69 FSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSD  148 (405)
Q Consensus        69 ~~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~  148 (405)
                      .|++||++++.+++++   +++++.|.|+|+++||||||.++|||++|++++.|.++. ..+|.++|||++|+|+++|++
T Consensus         3 ~p~~mkA~~~~~~~~~---l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~vG~~   78 (373)
T 2fzw_A            3 EVIKCKAAVAWEAGKP---LSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPE-GCFPVILGHLGAGIVESVGEG   78 (373)
T ss_dssp             CCEEEEEEEBCSTTSC---CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTT-CCSSBCCCCEEEEEEEEECTT
T ss_pred             CccceEEEEEecCCCC---cEEEEeeCCCCCCCEEEEEEEEEEEchhhHHHhcCCCCC-CCCCccccccccEEEEEECCC
Confidence            5889999999998865   889999999999999999999999999999999997653 367999999999999999999


Q ss_pred             CCCCCCCCEEEecCC-----------------------------------------------CCCcccceEeecccceEE
Q psy2960         149 VSSLAVGDHVIPDTQ-----------------------------------------------HLGTWRNYGKFNHDVLMK  181 (405)
Q Consensus       149 v~~~~~GdrV~~~~~-----------------------------------------------~~G~~a~~~~v~~~~~~~  181 (405)
                      |++|++||||++.+.                                               ..|+|+||++++++.+++
T Consensus        79 V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~~  158 (373)
T 2fzw_A           79 VTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAK  158 (373)
T ss_dssp             CCSCCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEE
T ss_pred             CCCCCCCCEEEECCCCCCCCChHHcCcCcccCCCcccccccccccCCcccccccccccccccCCccceeEEEEchhheEE
Confidence            999999999987531                                               148999999999999999


Q ss_pred             cCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHH
Q psy2960         182 VPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKS  260 (405)
Q Consensus       182 iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~  260 (405)
                      +|+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+++|+ +|+++.++++    +++.+++
T Consensus       159 iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga-G~vG~~avqla~~~Ga~~Vi~~~~~~~----~~~~~~~  233 (373)
T 2fzw_A          159 IDPLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKD----KFARAKE  233 (373)
T ss_dssp             CCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGG----GHHHHHH
T ss_pred             CCCCCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHH----HHHHHHH
Confidence            99999999999999999999999988899999999999997 9999999999999999 6777765544    3678889


Q ss_pred             cCCcEEeChhh----HHH-HhhhcCCCCCcEEEECCCc-hhHHHHHHhcccC-CEEEEEeccCC-CCcccCcccccccCe
Q psy2960         261 LGADYVFTEEE----LRN-ISRDASIPKPKLALNCVGG-NSATNLLRTLVSK-GVMVTYGGMSR-EPVQIPTSAFIFKDI  332 (405)
Q Consensus       261 lg~~~v~~~~d----~~~-i~~~t~g~g~Dvvld~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~k~~  332 (405)
                      +|+++++|+++    +.+ +++.+++ ++|+||||+|+ +.+..++++++++ |+++.+|.... ....++...++.++ 
T Consensus       234 lGa~~vi~~~~~~~~~~~~v~~~~~~-g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-  311 (373)
T 2fzw_A          234 FGATECINPQDFSKPIQEVLIEMTDG-GVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVTGR-  311 (373)
T ss_dssp             HTCSEEECGGGCSSCHHHHHHHHTTS-CBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHTTC-
T ss_pred             cCCceEeccccccccHHHHHHHHhCC-CCCEEEECCCcHHHHHHHHHhhccCCcEEEEEecCCCCceeeeCHHHHhcCC-
Confidence            99999998763    555 8888876 99999999998 4567889999999 99999996543 23345555566677 


Q ss_pred             EEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccC--CcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         333 TLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       333 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      ++.|+++..+.        ..+.++++++++++|++++  .++++|+++++++||+.+.  +++. +|+||++
T Consensus       312 ~i~g~~~~~~~--------~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~--~~~~-~kvvi~~  373 (373)
T 2fzw_A          312 TWKGTAFGGWK--------SVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFELMH--SGKS-IRTVVKI  373 (373)
T ss_dssp             EEEECSGGGCC--------HHHHHHHHHHHHHTTSSCSGGGEEEEEEGGGHHHHHHHHH--HTCC-SEEEEEC
T ss_pred             EEEEeccCCCC--------cHHHHHHHHHHHHcCCCCchheEeEEeeHHHHHHHHHHHh--CCCc-ceEEEeC
Confidence            99988654321        1355888999999999884  4689999999999999998  6665 7999975

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.6e-54  Score=412.64  Aligned_cols=320  Identities=22%  Similarity=0.272  Sum_probs=275.2

Q ss_pred             ceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCC
Q psy2960          72 LANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSS  151 (405)
Q Consensus        72 ~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~  151 (405)
                      +||+++++++|.+ +.+++++.|.|+|+++||||||.++|||++|++.+.|.++. +.+|.++|||++|+|+++|++|++
T Consensus         1 ~Mka~~~~~~g~~-~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~v~G~E~~G~V~~vG~~v~~   78 (327)
T 1qor_A            1 MATRIEFHKHGGP-EVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPP-PSLPSGLGTEAAGIVSKVGSGVKH   78 (327)
T ss_dssp             -CEEEEBSSCCSG-GGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCC-SSSSBCCCSCEEEEEEEECTTCCS
T ss_pred             CcEEEEEcCCCCh-hheEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCC-CCCCCCCCceeEEEEEEECCCCCC
Confidence            3899999998876 45889999999999999999999999999999999997753 357999999999999999999999


Q ss_pred             CCCCCEEEecC-CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHH
Q psy2960         152 LAVGDHVIPDT-QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNV  230 (405)
Q Consensus       152 ~~~GdrV~~~~-~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~a  230 (405)
                      |++|||| +.. ..+|+|+||++++++.++++|+++++++||+++++++|||+++.+.+++++|++|||+|++|++|+++
T Consensus        79 ~~~GdrV-~~~g~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~  157 (327)
T 1qor_A           79 IKAGDRV-VYAQSALGAYSSVHNIIADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIA  157 (327)
T ss_dssp             CCTTCEE-EESCCSSCCSBSEEEEEGGGEEECCTTSCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHH
T ss_pred             CCCCCEE-EECCCCCceeeeEEEecHHHcEECCCCCCHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHH
Confidence            9999999 442 23599999999999999999999999999999999999999998778999999999999999999999


Q ss_pred             HHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCC
Q psy2960         231 IQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKG  307 (405)
Q Consensus       231 iqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G  307 (405)
                      +|+|+..|++|+++.+++    ++++.++++|+++++|+++  +.+ +.+.+.+.++|++|||+|.+.+..++++++++|
T Consensus       158 ~~~a~~~G~~V~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~~g~~~~~~~~~~l~~~G  233 (327)
T 1qor_A          158 CQWAKALGAKLIGTVGTA----QKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRG  233 (327)
T ss_dssp             HHHHHHHTCEEEEEESSH----HHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSCGGGHHHHHHTEEEEE
T ss_pred             HHHHHHcCCEEEEEeCCH----HHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCceEEEECCchHHHHHHHHHhcCCC
Confidence            999999999999887553    3467778899999988643  445 777777778999999999888888999999999


Q ss_pred             EEEEEeccCCCCcccCccccccc-CeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcc--eeeehhhHHHH
Q psy2960         308 VMVTYGGMSREPVQIPTSAFIFK-DITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAH--KFVTLKNFQEA  384 (405)
Q Consensus       308 ~~v~~g~~~~~~~~~~~~~~~~k-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~--~~~~~~~~~~A  384 (405)
                      +++.+|........++...++.+ ++++.+.....+..   .+....+.++++++++++|++++.++  ++|+++++++|
T Consensus       234 ~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~~~l~~~~~A  310 (327)
T 1qor_A          234 LMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYIT---TREELTEASNELFSLIASGVIKVDVAEQQKYPLKDAQRA  310 (327)
T ss_dssp             EEEECCCTTCCCCCBCTHHHHHTTSCEEECCCHHHHCC---SHHHHHHHHHHHHHHHHTTSSCCCCCGGGEEEGGGHHHH
T ss_pred             EEEEEecCCCCCCccCHHHHhhccceEEEccchhhhcC---CHHHHHHHHHHHHHHHHCCCcccccccCcEEcHHHHHHH
Confidence            99999965543344566666677 88887655433321   12445677899999999999999888  99999999999


Q ss_pred             HHHHhhhcCCCCceEEEEe
Q psy2960         385 LMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       385 ~~~~~~~~~~~~gKvvl~~  403 (405)
                      |+.+.  +++..||+||++
T Consensus       311 ~~~~~--~~~~~gKvvl~~  327 (327)
T 1qor_A          311 HEILE--SRATQGSSLLIP  327 (327)
T ss_dssp             HHHHH--TTCCCBCCEEEC
T ss_pred             HHHHH--hCCCCceEEEeC
Confidence            99999  888899999974

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=7.1e-54  Score=415.42  Aligned_cols=313  Identities=19%  Similarity=0.284  Sum_probs=267.9

Q ss_pred             CcccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcC
Q psy2960          68 GFSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGS  147 (405)
Q Consensus        68 ~~~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~  147 (405)
                      ..|++||++++++++++   +++++.|.|+|+++||||||.++|||++|++++.|.++.  .+|.++|||++|+|+++|+
T Consensus         4 ~~~~~mkA~~~~~~g~~---l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~P~v~GhE~~G~V~~vG~   78 (374)
T 2jhf_A            4 GKVIKCKAAVLWEEKKP---FSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT--PLPVIAGHEAAGIVESIGE   78 (374)
T ss_dssp             TSCEEEEEEEBCSTTSC---CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCC--CSSBCCCCSEEEEEEEECT
T ss_pred             CCceeEEEEEEecCCCc---eEEEEccCCCCCCCeEEEEEeEEeechhhHHHHcCCCCC--CCCcccCcCceEEEEEECC
Confidence            35789999999999865   889999999999999999999999999999999997654  3799999999999999999


Q ss_pred             CCCCCCCCCEEEecCC-----------------------------------------------CCCcccceEeecccceE
Q psy2960         148 DVSSLAVGDHVIPDTQ-----------------------------------------------HLGTWRNYGKFNHDVLM  180 (405)
Q Consensus       148 ~v~~~~~GdrV~~~~~-----------------------------------------------~~G~~a~~~~v~~~~~~  180 (405)
                      +|++|++||||++.+.                                               ..|+|+||++++++.++
T Consensus        79 ~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~g~~~~~~~~~G~~aey~~v~~~~~~  158 (374)
T 2jhf_A           79 GVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVA  158 (374)
T ss_dssp             TCCSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEE
T ss_pred             CCCCCCCCCEEEECCCCCCCCCccccCCCcCcCCCCccccccccccCCcccccccccccccccCCccCeeEEEEchHHeE
Confidence            9999999999997531                                               13899999999999999


Q ss_pred             EcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHH
Q psy2960         181 KVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLK  259 (405)
Q Consensus       181 ~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~  259 (405)
                      ++|+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+++|+ +|+++.++++    +++.++
T Consensus       159 ~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~~----~~~~~~  233 (374)
T 2jhf_A          159 KIDAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKD----KFAKAK  233 (374)
T ss_dssp             ECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG----GHHHHH
T ss_pred             ECCCCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCHH----HHHHHH
Confidence            999999999999999999999999988899999999999996 9999999999999999 6777765543    367888


Q ss_pred             HcCCcEEeChhh----HHH-HhhhcCCCCCcEEEECCCc-hhHHHHHHhcccC-CEEEEEeccCC-CCcccCcccccccC
Q psy2960         260 SLGADYVFTEEE----LRN-ISRDASIPKPKLALNCVGG-NSATNLLRTLVSK-GVMVTYGGMSR-EPVQIPTSAFIFKD  331 (405)
Q Consensus       260 ~lg~~~v~~~~d----~~~-i~~~t~g~g~Dvvld~~g~-~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~k~  331 (405)
                      ++|+++++|+++    +.+ +++.+++ ++|+||||+|+ +.+..++++++++ |+++.+|.... ....++...++.++
T Consensus       234 ~lGa~~vi~~~~~~~~~~~~~~~~~~~-g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~  312 (374)
T 2jhf_A          234 EVGATECVNPQDYKKPIQEVLTEMSNG-GVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGR  312 (374)
T ss_dssp             HTTCSEEECGGGCSSCHHHHHHHHTTS-CBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCEEECTHHHHTTC
T ss_pred             HhCCceEecccccchhHHHHHHHHhCC-CCcEEEECCCCHHHHHHHHHHhhcCCcEEEEeccCCCCCccccCHHHHhcCC
Confidence            999999998763    556 7888876 99999999998 4567889999999 99999996543 23345555666778


Q ss_pred             eEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccC--CcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         332 ITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       332 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~--~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                       ++.|+++..+.        ..+.++++++++++|++++  .++++|+++++++||+.+.  +++ .+|+||++
T Consensus       313 -~i~g~~~~~~~--------~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~--~~~-~~Kvvi~~  374 (374)
T 2jhf_A          313 -TWKGAIFGGFK--------SKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLLR--SGE-SIRTILTF  374 (374)
T ss_dssp             -EEEECSGGGCC--------HHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHH--TTC-CSEEEEEC
T ss_pred             -eEEEeccCCCC--------hHHHHHHHHHHHHcCCCCchhheEEEEeHHHHHHHHHHHH--CCC-cceEEEeC
Confidence             99998754321        1346888999999999884  4689999999999999998  666 47999975

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=100.00  E-value=2e-54  Score=415.43  Aligned_cols=307  Identities=23%  Similarity=0.305  Sum_probs=268.0

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      |||+++...++  ..++++|.|.|+|+||||||||.|+|||++|++++.|.++.  .+|.++|||++|+|+++|++|++|
T Consensus         1 MKA~v~~~~~~--~~~~l~e~~~P~~~p~eVLVkv~a~gic~~D~~~~~G~~~~--~~p~i~GhE~aG~V~~vG~~V~~~   76 (348)
T 4eez_A            1 MKAAVVRHNPD--GYADLVEKELRAIKPNEALLDMEYCGVCHTDLHVAAGDFGN--KAGTVLGHEGIGIVKEIGADVSSL   76 (348)
T ss_dssp             CEEEEECSSCC--SSEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTTTCC--CTTCBCCSEEEEEEEEECTTCCSC
T ss_pred             CeEEEEEcCCC--CcEEEEEeECCCCCCCEEEEEEEEEEECHHHHHHhcCCCCC--CCCcccceeEEEEEEEECceeeec
Confidence            89999976443  33899999999999999999999999999999999998765  679999999999999999999999


Q ss_pred             CCCCEEEecC---------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHH
Q psy2960         153 AVGDHVIPDT---------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRML  205 (405)
Q Consensus       153 ~~GdrV~~~~---------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al  205 (405)
                      ++||||++.+                           ..+|+|+||+.++++.++++|+++++++||+++++++|||+++
T Consensus        77 ~~GdrV~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ae~~~~~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l  156 (348)
T 4eez_A           77 QVGDRVSVAWFFEGCGHCEYCVSGNETFCREVKNAGYSVDGGMAEEAIVVADYAVKVPDGLDPIEASSITCAGVTTYKAI  156 (348)
T ss_dssp             CTTCEEEEESEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGSCBCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeEeecccccccCccccccCCcccccccccccccccCCcceeeccccccceeecCCCCCHHHHhhcccceeeEEeee
Confidence            9999997642                           2359999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCC
Q psy2960         206 KDYNSLSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASI  281 (405)
Q Consensus       206 ~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g  281 (405)
                      .. +++++|++|||+|+ |++|.+++|+|+.+ |++|+++.++    +++++.++++|+++++|+++  +.+ +++.|++
T Consensus       157 ~~-~~~~~g~~VlV~Ga-G~~g~~a~~~a~~~~g~~Vi~~~~~----~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g  230 (348)
T 4eez_A          157 KV-SGVKPGDWQVIFGA-GGLGNLAIQYAKNVFGAKVIAVDIN----QDKLNLAKKIGADVTINSGDVNPVDEIKKITGG  230 (348)
T ss_dssp             HH-HTCCTTCEEEEECC-SHHHHHHHHHHHHTSCCEEEEEESC----HHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTS
T ss_pred             cc-cCCCCCCEEEEEcC-CCccHHHHHHHHHhCCCEEEEEECc----HHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCC
Confidence            65 79999999999998 89999999999876 6788888755    34588999999999999764  555 9999999


Q ss_pred             CCCcEEEECCCchhH-HHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHH
Q psy2960         282 PKPKLALNCVGGNSA-TNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELT  360 (405)
Q Consensus       282 ~g~Dvvld~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  360 (405)
                      .++|++++++++... ..++++++++|+++.+|... ....++...++.+++++.|++.++           ...+++++
T Consensus       231 ~g~d~~~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~gs~~~~-----------~~~~~~~~  298 (348)
T 4eez_A          231 LGVQSAIVCAVARIAFEQAVASLKPMGKMVAVAVPN-TEMTLSVPTVVFDGVEVAGSLVGT-----------RLDLAEAF  298 (348)
T ss_dssp             SCEEEEEECCSCHHHHHHHHHTEEEEEEEEECCCCS-CEEEECHHHHHHSCCEEEECCSCC-----------HHHHHHHH
T ss_pred             CCceEEEEeccCcchhheeheeecCCceEEEEeccC-CCCccCHHHHHhCCeEEEEEecCC-----------HHHHHHHH
Confidence            999999999987654 67899999999999998543 334566677888999999987654           34478889


Q ss_pred             HHHHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEec
Q psy2960         361 EMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       361 ~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                      +++++|+++|. +++|+|+++++||+.++  +++..||+||+|+
T Consensus       299 ~l~~~g~i~p~-~~~~~l~~~~~A~~~l~--~g~~~GKvVl~~s  339 (348)
T 4eez_A          299 QFGAEGKVKPI-VATRKLEEINDIIDEMK--AGKIEGRMVIDFT  339 (348)
T ss_dssp             HHHHTTSCCCC-EEEECGGGHHHHHHHHH--TTCCSSEEEEECC
T ss_pred             HHHHcCCCEEE-EEEEeHHHHHHHHHHHH--CCCCccEEEEEcc
Confidence            99999999974 57899999999999999  8999999999986

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.7e-54  Score=417.01  Aligned_cols=312  Identities=21%  Similarity=0.261  Sum_probs=268.7

Q ss_pred             ccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCC
Q psy2960          70 SYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDV  149 (405)
Q Consensus        70 ~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v  149 (405)
                      |++||++++++++.+   +++++.|.|+|+++||||||.++|||++|++++.|.++.  .+|.++|||++|+|+++|++|
T Consensus         4 ~~~mka~~~~~~g~~---l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~P~v~GhE~~G~V~~vG~~v   78 (371)
T 1f8f_A            4 LKDIIAAVTPCKGAD---FELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPV--PLPAVLGHEGSGIIEAIGPNV   78 (371)
T ss_dssp             CEEEEEEEBCSTTCC---CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCC--CSSBCCCCEEEEEEEEECTTC
T ss_pred             cccceEEEEcCCCCC---eEEEEecCCCCCCCEEEEEEEEeecCchhHHHHcCCCCC--CCCcccCcccceEEEEeCCCC
Confidence            568999999998865   889999999999999999999999999999999997653  579999999999999999999


Q ss_pred             CCCCCCCEEEecC------------------------------------------------CCCCcccceEeecccceEE
Q psy2960         150 SSLAVGDHVIPDT------------------------------------------------QHLGTWRNYGKFNHDVLMK  181 (405)
Q Consensus       150 ~~~~~GdrV~~~~------------------------------------------------~~~G~~a~~~~v~~~~~~~  181 (405)
                      ++|++||||++.+                                                ...|+|+||++++++.+++
T Consensus        79 ~~~~~GdrV~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~~g~~~~~~~~~~G~~aey~~v~~~~~~~  158 (371)
T 1f8f_A           79 TELQVGDHVVLSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVK  158 (371)
T ss_dssp             CSCCTTCEEEECCCCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEE
T ss_pred             CCCCCCCEEEecCCCCCCChhhhCcCccccccccccccccccccccccccccCCccccccccCCccccCeEEechhheEE
Confidence            9999999998631                                                0148999999999999999


Q ss_pred             cCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCcchHHHHHHHHH
Q psy2960         182 VPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKS  260 (405)
Q Consensus       182 iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~~~~~~~~~~~~  260 (405)
                      +|+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+++|++ |+++.++    +++++.+++
T Consensus       159 iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~Ga-G~vG~~a~qlak~~Ga~~Vi~~~~~----~~~~~~a~~  233 (371)
T 1f8f_A          159 VTKDVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIV----ESRLELAKQ  233 (371)
T ss_dssp             ECTTSCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESC----HHHHHHHHH
T ss_pred             CCCCCCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEECCC----HHHHHHHHH
Confidence            99999999999999999999999987789999999999996 99999999999999995 6666544    456788999


Q ss_pred             cCCcEEeChhh--HHH-HhhhcCCCCCcEEEECCCch-hHHHHHHhcccCCEEEEEeccCC-CCcccCcccccccCeEEE
Q psy2960         261 LGADYVFTEEE--LRN-ISRDASIPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSR-EPVQIPTSAFIFKDITLR  335 (405)
Q Consensus       261 lg~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~k~~~~~  335 (405)
                      +|+++++|+++  +.+ +++.+++ ++|+||||+|++ .+..++++++++|+++.+|.... .+..++...++.+++++.
T Consensus       234 lGa~~vi~~~~~~~~~~~~~~~~g-g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~  312 (371)
T 1f8f_A          234 LGATHVINSKTQDPVAAIKEITDG-GVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTIL  312 (371)
T ss_dssp             HTCSEEEETTTSCHHHHHHHHTTS-CEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCHHHHHHTTCEEE
T ss_pred             cCCCEEecCCccCHHHHHHHhcCC-CCcEEEECCCCHHHHHHHHHHHhcCCEEEEeCCCCCCCccccCHHHHHhCCCEEE
Confidence            99999998753  555 8888877 999999999984 56778999999999999996542 234566666778999999


Q ss_pred             EEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCC--cceeeehhhHHHHHHHHhhhcCCCCceEEEEec
Q psy2960         336 GHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAP--AHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       336 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~--~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                      |++...+.        ..+.++++++++++|++++.  +++ |+++++++||+.+.  +++. +|+||++.
T Consensus       313 g~~~~~~~--------~~~~~~~~~~l~~~g~l~~~~~i~~-~~l~~~~~A~~~~~--~~~~-~Kvvv~~~  371 (371)
T 1f8f_A          313 GVVEGSGS--------PKKFIPELVRLYQQGKFPFDQLVKF-YAFDEINQAAIDSR--KGIT-LKPIIKIA  371 (371)
T ss_dssp             ECSGGGSC--------HHHHHHHHHHHHHTTSCCGGGGEEE-EEGGGHHHHHHHHH--HTSC-SEEEEECC
T ss_pred             EeCCCCCc--------hHHHHHHHHHHHHcCCCCcccceeE-ecHHHHHHHHHHHH--CCCc-eEEEEeeC
Confidence            98764321        13568899999999999864  567 99999999999998  7765 79999874

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=100.00  E-value=5e-55  Score=433.17  Aligned_cols=321  Identities=20%  Similarity=0.244  Sum_probs=274.4

Q ss_pred             cCCcccceeEEEEccCC----------CCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhc--------------
Q psy2960          66 ARGFSYLANKLVYNQHG----------TPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQ--------------  121 (405)
Q Consensus        66 ~~~~~~~~~a~~~~~~g----------~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~--------------  121 (405)
                      ...+|.+||++++++++          .+.+.+++++.|.|+|++|||||||.++|||++|++...              
T Consensus        18 ~~~~p~tmkA~v~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVrV~a~gic~sD~~~~~~~~~~~~~~~~~~~   97 (447)
T 4a0s_A           18 AAPVPDTYLALHLRAEDADMFKGVADKDVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNA   97 (447)
T ss_dssp             HSCCCSEEEEEEEEGGGTTTTTTCSSCCHHHHCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSCHHHHHHHHH
T ss_pred             ccCCChhheeeeeeccccccccccccCCCCCCceEEeccCCCCCCCeEEEEEEEEEECcHHhhhhccCcccchhhhhhhc
Confidence            34689999999999987          222458999999999999999999999999999986432              


Q ss_pred             --ccCCCCCCCC-CCCccceEEEEEEEcCCCCCCCCCCEEEecCC--------------------------CCCcccceE
Q psy2960         122 --GVYPIKPTLP-AVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQ--------------------------HLGTWRNYG  172 (405)
Q Consensus       122 --g~~~~~~~~p-~~lG~E~~G~V~~vG~~v~~~~~GdrV~~~~~--------------------------~~G~~a~~~  172 (405)
                        |.++....+| .++|||++|+|+++|++|++|++||||++.+.                          ..|+|+||+
T Consensus        98 ~~g~~~~~~~~P~~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~~~~~~~~~~~~c~~~~~~G~~~~~G~~aey~  177 (447)
T 4a0s_A           98 RQGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEPATHGDGMLGTEQRAWGFETNFGGLAEYG  177 (447)
T ss_dssp             TTCGGGGGGCCSEEECCSCEEEEEEEECTTCCSCCTTCEEEECSEECCTTSGGGGTCTTCSTTCEETTTTSSSCSSBSEE
T ss_pred             ccCccccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEecCcCcCcccccccccccccccccccccCCCCceeeee
Confidence              2222222456 69999999999999999999999999998631                          159999999


Q ss_pred             eecccceEEcCCCCChhhhccCCCcHHHHHHHHHhh--cCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcc
Q psy2960         173 KFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDY--NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD  250 (405)
Q Consensus       173 ~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~--~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~  250 (405)
                      ++++++++++|+++++++||+++++++|||+++...  +++++|++|||+|++|++|++++|+|+++|+++++++++   
T Consensus       178 ~v~~~~~~~iP~~ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~---  254 (447)
T 4a0s_A          178 VVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSS---  254 (447)
T ss_dssp             EEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS---
T ss_pred             ecCHHHcEECCCCCCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCC---
Confidence            999999999999999999999999999999999743  899999999999999999999999999999999998854   


Q ss_pred             hHHHHHHHHHcCCcEEeChhhH--------------------HH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEE
Q psy2960         251 IDKLKSYLKSLGADYVFTEEEL--------------------RN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVM  309 (405)
Q Consensus       251 ~~~~~~~~~~lg~~~v~~~~d~--------------------~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~  309 (405)
                       +++++.++++|+++++++.+.                    .+ +++.+ +.++|+||||+|++.+..++++++++|++
T Consensus       255 -~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-g~g~Dvvid~~G~~~~~~~~~~l~~~G~i  332 (447)
T 4a0s_A          255 -AQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKA-GREPDIVFEHTGRVTFGLSVIVARRGGTV  332 (447)
T ss_dssp             -HHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHHHHHHH-SSCCSEEEECSCHHHHHHHHHHSCTTCEE
T ss_pred             -HHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHHHHHHHHh-CCCceEEEECCCchHHHHHHHHHhcCCEE
Confidence             345788899999999986432                    34 77778 78999999999998888899999999999


Q ss_pred             EEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHHh
Q psy2960         310 VTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTM  389 (405)
Q Consensus       310 v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~  389 (405)
                      +.+|........++...++.+++++.|++....           +.+.++++++++|++++.++++|+++++++||+.+.
T Consensus       333 v~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~-----------~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~  401 (447)
T 4a0s_A          333 VTCGSSSGYLHTFDNRYLWMKLKKIVGSHGANH-----------EEQQATNRLFESGAVVPAMSAVYPLAEAAEACRVVQ  401 (447)
T ss_dssp             EESCCTTCSEEEEEHHHHHHTTCEEEECCSCCH-----------HHHHHHHHHHHTTSSCCCEEEEEEGGGHHHHHHHHH
T ss_pred             EEEecCCCcccccCHHHHHhCCCEEEecCCCCH-----------HHHHHHHHHHHcCCcccceeEEEcHHHHHHHHHHHh
Confidence            999966544445555667789999999876542           335678999999999999999999999999999999


Q ss_pred             hhcCCCCceEEEEec
Q psy2960         390 SIQGKSGVKYYIDFR  404 (405)
Q Consensus       390 ~~~~~~~gKvvl~~~  404 (405)
                        +++..||+||.+.
T Consensus       402 --~~~~~GKvvv~~~  414 (447)
T 4a0s_A          402 --TSRQVGKVAVLCM  414 (447)
T ss_dssp             --TTCCSSEEEEESS
T ss_pred             --cCCCceEEEEEeC
Confidence              8999999999874

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=100.00  E-value=9.5e-55  Score=431.79  Aligned_cols=322  Identities=16%  Similarity=0.205  Sum_probs=275.9

Q ss_pred             cCCcccceeEEEEccCC------------CCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhccc----------
Q psy2960          66 ARGFSYLANKLVYNQHG------------TPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGV----------  123 (405)
Q Consensus        66 ~~~~~~~~~a~~~~~~g------------~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~----------  123 (405)
                      ...+|.+|||+++.+++            ++...+++++.|.|+|++|||||||.++|||++|++...+.          
T Consensus        24 ~~~iP~tmkA~v~~~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~~~~~~~~~~~~  103 (456)
T 3krt_A           24 ALPLPESYRAITVHKDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLER  103 (456)
T ss_dssp             HSCCCSCEEEEEEEGGGTTTTTTCCGGGCCHHHHCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTCSSCSHHHHHH
T ss_pred             cCCCCcceEEEEEeccccccccccccccCCCCCCcEEEEccCCCCCCCeEEEEEEEEEecchhhhhhhcCcccchhhhhh
Confidence            34689999999999872            22345899999999999999999999999999998765321          


Q ss_pred             ---C---CCCCCCC-CCCccceEEEEEEEcCCCCCCCCCCEEEecCC--------------------------CCCcccc
Q psy2960         124 ---Y---PIKPTLP-AVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQ--------------------------HLGTWRN  170 (405)
Q Consensus       124 ---~---~~~~~~p-~~lG~E~~G~V~~vG~~v~~~~~GdrV~~~~~--------------------------~~G~~a~  170 (405)
                         .   .....+| .++|||++|+|+++|++|++|++||||++.+.                          .+|+|+|
T Consensus       104 ~g~~~~~~~~~~~P~~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~~~c~~~~~~~~~~~~~c~~~~~~G~~~~~G~~ae  183 (456)
T 3krt_A          104 YGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESSDGHNDTMLDPEQRIWGFETNFGGLAE  183 (456)
T ss_dssp             HHTSCHHHHTTCCSEEECCSCCEEEEEEECTTCCSCCTTCEEEECCEECCCCSGGGTTSGGGCTTCEETTTTSSSCSSBS
T ss_pred             ccccccccccCCCCcccccceeEEEEEEECCCCCCCCCCCEEEEeCCcccccccccccccccCccccccccCCCCCcccc
Confidence               1   1112456 69999999999999999999999999997521                          2499999


Q ss_pred             eEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhh--cCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         171 YGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDY--NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       171 ~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~--~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      |+++++++++++|+++++++||+++++++|||+++...  +++++|++|||+|++|++|++++|+|+++|+++++++++ 
T Consensus       184 y~~v~~~~~~~~P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~-  262 (456)
T 3krt_A          184 IALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSS-  262 (456)
T ss_dssp             EEEEEGGGEEECCTTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS-
T ss_pred             eEEechHHeeECCCCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECC-
Confidence            99999999999999999999999999999999999764  789999999999999999999999999999999998854 


Q ss_pred             cchHHHHHHHHHcCCcEEeChhh-------------------HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCE
Q psy2960         249 DDIDKLKSYLKSLGADYVFTEEE-------------------LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGV  308 (405)
Q Consensus       249 ~~~~~~~~~~~~lg~~~v~~~~d-------------------~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~  308 (405)
                         +++++.++++|+++++|+.+                   +.+ +++.|++.++|+||||+|++.+..++++++++|+
T Consensus       263 ---~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G~~~~~~~~~~l~~~G~  339 (456)
T 3krt_A          263 ---PQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRETFGASVFVTRKGGT  339 (456)
T ss_dssp             ---HHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHHHHHHHTSCCEEEEEECSCHHHHHHHHHHEEEEEE
T ss_pred             ---HHHHHHHHhhCCcEEEecCcCcccccccccccchHHHHHHHHHHHHHhCCCCCcEEEEcCCchhHHHHHHHhhCCcE
Confidence               44578899999999998643                   225 8888988999999999999888899999999999


Q ss_pred             EEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHH
Q psy2960         309 MVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNT  388 (405)
Q Consensus       309 ~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~  388 (405)
                      ++.+|........++...++.+++++.|++...+           +.+.++++++++|++++.++++|+|+++++||+.+
T Consensus       340 iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~-----------~~~~~~~~l~~~g~l~~~i~~~~~l~~~~eA~~~l  408 (456)
T 3krt_A          340 ITTCASTSGYMHEYDNRYLWMSLKRIIGSHFANY-----------REAWEANRLIAKGRIHPTLSKVYSLEDTGQAAYDV  408 (456)
T ss_dssp             EEESCCTTCSEEEEEHHHHHHTTCEEEECCSCCH-----------HHHHHHHHHHHTTSSCCCEEEEEEGGGHHHHHHHH
T ss_pred             EEEEecCCCcccccCHHHHHhcCeEEEEeccCCH-----------HHHHHHHHHHHcCCcccceeEEEcHHHHHHHHHHH
Confidence            9999976554445566667789999999887542           22456889999999999999999999999999999


Q ss_pred             hhhcCCCCceEEEEec
Q psy2960         389 MSIQGKSGVKYYIDFR  404 (405)
Q Consensus       389 ~~~~~~~~gKvvl~~~  404 (405)
                      .  +++..||+||.+.
T Consensus       409 ~--~~~~~GKvvv~~~  422 (456)
T 3krt_A          409 H--RNLHQGKVGVLCL  422 (456)
T ss_dssp             H--TTCSSSEEEEESS
T ss_pred             H--hCCCCCcEEEEeC
Confidence            9  8999999999874

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=100.00  E-value=7.4e-54  Score=414.54  Aligned_cols=320  Identities=21%  Similarity=0.221  Sum_probs=262.8

Q ss_pred             CCcccceeEEEEccCCCCccceEee-eecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEE
Q psy2960          67 RGFSYLANKLVYNQHGTPLRVVTVE-NETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEV  145 (405)
Q Consensus        67 ~~~~~~~~a~~~~~~g~~~~~l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~v  145 (405)
                      ..+|.+||++++++++.    ++++ +.|.|+|++|||||||.++|||++|++++.|.    +.+|.++|||++|+|+++
T Consensus         6 m~~p~~mkA~v~~~~~~----l~~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~----~~~p~v~G~e~~G~V~~v   77 (371)
T 3gqv_A            6 FIPPPQQTALTVNDHDE----VTVWNAAPCPMLPRDQVYVRVEAVAINPSDTSMRGQF----ATPWAFLGTDYAGTVVAV   77 (371)
T ss_dssp             CCCCSCEEEEEECTTSC----EEEEEEECCCCCCTTSEEEEEEEEECCGGGGC---------CCTTSCCCSEEEEEEEEE
T ss_pred             CCCchhceeEEEcCCCc----eEEeccCCCCCCCCCEEEEEEEEEEcCHHHHHHhhcC----CCCCccCccccEEEEEEe
Confidence            45789999999999876    8998 99999999999999999999999999998773    246899999999999999


Q ss_pred             cCCCCCCCCCCEEEecCC-------CCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhh-cCC------
Q psy2960         146 GSDVSSLAVGDHVIPDTQ-------HLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDY-NSL------  211 (405)
Q Consensus       146 G~~v~~~~~GdrV~~~~~-------~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~-~~~------  211 (405)
                      |++|++|++||||++...       .+|+|+||++++++.++++|+++++++||+++++++|||+++.+. .++      
T Consensus        78 G~~v~~~~~GdrV~~~~~~~~~~~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~  157 (371)
T 3gqv_A           78 GSDVTHIQVGDRVYGAQNEMCPRTPDQGAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSAD  157 (371)
T ss_dssp             CTTCCSCCTTCEEEEECCTTCTTCTTCCSSBSEEECCTTCEEECCTTCCHHHHHTSHHHHHHHHHHHHHHTCCCCCSSCS
T ss_pred             CCCCCCCCCCCEEEEeccCCCCCCCCCCcCcCeEEEchhheEECCCCCCHHHHhhhhhhHHHHHHHHHhhccCCCCCccc
Confidence            999999999999998752       369999999999999999999999999999999999999999876 453      


Q ss_pred             -----CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCCCC
Q psy2960         212 -----SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIPK  283 (405)
Q Consensus       212 -----~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g~g  283 (405)
                           ++|++|||+|++|++|++++|+|+++|++|++++ +++    +++.++++|+++++|+++  +.+ +++.|+++ 
T Consensus       158 ~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~----~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~-  231 (371)
T 3gqv_A          158 QPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPH----NFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNN-  231 (371)
T ss_dssp             SCCCCSSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGG----GHHHHHHTTCSEEEETTSTTHHHHHHHHTTTC-
T ss_pred             cccccCCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHH----HHHHHHHcCCcEEEECCCchHHHHHHHHccCC-
Confidence                 8999999999999999999999999999999887 333    368889999999998754  556 88888764 


Q ss_pred             CcEEEECCCch-hHHHHHHhc-ccCCEEEEEeccCCC-----Cccc---CcccccccCeEEEEEecchhhhhhccHHHHH
Q psy2960         284 PKLALNCVGGN-SATNLLRTL-VSKGVMVTYGGMSRE-----PVQI---PTSAFIFKDITLRGHWMTRWQKENKESAERK  353 (405)
Q Consensus       284 ~Dvvld~~g~~-~~~~~~~~l-~~~G~~v~~g~~~~~-----~~~~---~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~  353 (405)
                      +|+||||+|++ .+..+++++ +++|+++.+|.....     ....   ....++.|++++.|++........  ++...
T Consensus       232 ~d~v~d~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~--~~~~~  309 (371)
T 3gqv_A          232 LRYALDCITNVESTTFCFAAIGRAGGHYVSLNPFPEHAATRKMVTTDWTLGPTIFGEGSTWPAPYGRPGSEEE--RQFGE  309 (371)
T ss_dssp             CCEEEESSCSHHHHHHHHHHSCTTCEEEEESSCCCC---CCSCEEEEECCGGGGGTSCBSCSTTTCBCCCHHH--HHHHH
T ss_pred             ccEEEECCCchHHHHHHHHHhhcCCCEEEEEecCccccccccccceeeeeeeeeccccccccccccccccHHH--HHHHH
Confidence            99999999985 456789999 599999999854421     1111   123466788988887543322111  13345


Q ss_pred             HHHHHHHHHHHcCcccCCcc--eeeehhhHHHHHHHHhhhcCCCCc-eEEEEec
Q psy2960         354 SMMNELTEMMRTGKLAAPAH--KFVTLKNFQEALMNTMSIQGKSGV-KYYIDFR  404 (405)
Q Consensus       354 ~~~~~~~~~~~~g~l~~~~~--~~~~~~~~~~A~~~~~~~~~~~~g-Kvvl~~~  404 (405)
                      +.++++++++++|++++.+.  +.|+++++++||+.+.  +++..| |+|++++
T Consensus       310 ~~~~~~~~l~~~g~l~~~~~~~~~~~l~~~~~A~~~l~--~g~~~Gkkvvv~~~  361 (371)
T 3gqv_A          310 DLWRIAGQLVEDGRLVHHPLRVVQGGFDHIKQGMELVR--KGELSGEKLVVRLE  361 (371)
T ss_dssp             HHHHHHHHHHHTTSSCCCCEEEEEECHHHHHHHHHHHH--TTCCSSCEEEEEEC
T ss_pred             HHHHHHHHHHHCCeeeCCcCeecCCcHHHHHHHHHHHH--cCCCceEEEEEEeC
Confidence            66778999999999998744  4599999999999999  888887 5666654

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=100.00  E-value=6.6e-54  Score=411.56  Aligned_cols=311  Identities=19%  Similarity=0.194  Sum_probs=262.9

Q ss_pred             eeEEEEccCCCCccceEeeeecCCC-CCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNS-VQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSS  151 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~  151 (405)
                      |||++++++|.    ++++|.|.|+ ++||||||||.|+|||++|++.+.|..+.  .+|+++|||++|+|+++|++|++
T Consensus         1 MkAvv~~~~g~----l~v~e~p~P~~~~~~eVlVkv~a~gi~~sD~~~~~g~~~~--~~P~i~G~E~~G~V~~vG~~V~~   74 (346)
T 4a2c_A            1 MKSVVNDTDGI----VRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGAH--YYPITLGHEFSGYIDAVGSGVDD   74 (346)
T ss_dssp             CEEEEECSSSC----EEEEECCCCCCCSTTEEEEEEEEEECCTTHHHHHHSSCSS--SSSBCCCCEEEEEEEEECTTCCS
T ss_pred             CCEEEEecCCC----EEEEEEeCCCCCCcCEEEEEEEEEEECHHHHHHHcCCCCC--CCCccccEEEEEEEEEECCCccc
Confidence            89999999987    9999999998 57999999999999999999999987654  67999999999999999999999


Q ss_pred             CCCCCEEEecC--------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHH
Q psy2960         152 LAVGDHVIPDT--------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRML  205 (405)
Q Consensus       152 ~~~GdrV~~~~--------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al  205 (405)
                      +++||||++.+                          ..+|+|+||+++++++++++|+++++++||+++  .+++++.+
T Consensus        75 ~~~GdrV~~~~~~~~g~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~--~~~~~~~~  152 (346)
T 4a2c_A           75 LHPGDAVACVPLLPCFTCPECLKGFYSQCAKYDFIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIE--PITVGLHA  152 (346)
T ss_dssp             CCTTCEEEECCEECCSCSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEEEGGGEEECCTTSCGGGGGGHH--HHHHHHHH
T ss_pred             ccCCCeEEeeeccCCCCcccccCCccccCCCcccccCCCCcccccccccchheEEECCCCCCHHHHHhch--HHHHHHHH
Confidence            99999998752                          235999999999999999999999999999875  34444444


Q ss_pred             HhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCCC
Q psy2960         206 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIP  282 (405)
Q Consensus       206 ~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g~  282 (405)
                      ....++++|++|||+|+ |++|++++|+|+++|+++++++++.   ++++++++++|+++++|+++  ..+ +++.+++.
T Consensus       153 ~~~~~~~~g~~VlV~Ga-G~vG~~aiq~ak~~G~~~vi~~~~~---~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~  228 (346)
T 4a2c_A          153 FHLAQGCENKNVIIIGA-GTIGLLAIQCAVALGAKSVTAIDIS---SEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELR  228 (346)
T ss_dssp             HHHTTCCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESC---HHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGC
T ss_pred             HHHhccCCCCEEEEECC-CCcchHHHHHHHHcCCcEEEEEech---HHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccC
Confidence            55689999999999998 9999999999999999987777443   45689999999999998765  555 78888899


Q ss_pred             CCcEEEECCCchh-HHHHHHhcccCCEEEEEeccCCCC--cccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHH
Q psy2960         283 KPKLALNCVGGNS-ATNLLRTLVSKGVMVTYGGMSREP--VQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNEL  359 (405)
Q Consensus       283 g~Dvvld~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~--~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  359 (405)
                      ++|+|+||+|.+. +..++++++++|+++.+|......  ...+...++.|++++.|++.......      ..+.++++
T Consensus       229 g~d~v~d~~G~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~k~~~i~G~~~~~~~~~------~~~~~~~~  302 (346)
T 4a2c_A          229 FNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSATFGKILRKELTVIGSWMNYSSPW------PGQEWETA  302 (346)
T ss_dssp             SSEEEEECSCSHHHHHHHHHHCCTTCEEEECCCCSSCEEECHHHHHHHHHHTCEEEECCTTCCSST------TCHHHHHH
T ss_pred             CcccccccccccchhhhhhheecCCeEEEEEeccCCCccccccCHHHHhhceeEEEEEeccccCcc------hHHHHHHH
Confidence            9999999999764 567899999999999999654432  22344556789999999876432211      13457889


Q ss_pred             HHHHHcCcccC--CcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         360 TEMMRTGKLAA--PAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       360 ~~~~~~g~l~~--~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      ++++++|++++  .++++|+|+++++||+.++  +++..||+||++
T Consensus       303 ~~l~~~g~l~~~~lI~~~~~l~~~~~A~~~l~--~~~~~GKvVl~P  346 (346)
T 4a2c_A          303 SRLLTERKLSLEPLIAHRGSFESFAQAVRDIA--RNAMPGKVLLIP  346 (346)
T ss_dssp             HHHHHTTCSCCGGGEEEEECHHHHHHHHHHHT--TSCCCSEEEECC
T ss_pred             HHHHHcCCCCCCccEeEEEeHHHHHHHHHHHH--cCCCceEEEEEC
Confidence            99999999864  4789999999999999999  899999999964

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=100.00  E-value=2.9e-54  Score=408.64  Aligned_cols=308  Identities=17%  Similarity=0.251  Sum_probs=253.6

Q ss_pred             ccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCC
Q psy2960          70 SYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDV  149 (405)
Q Consensus        70 ~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v  149 (405)
                      |+|||++++++.  + +.+++++.|.|+|++|||||||.++|||++|++.+.|.++. ..+|.++|||++|+|+++|++|
T Consensus         2 M~tMka~~~~~~--~-~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~i~G~e~~G~V~~vG~~v   77 (315)
T 3goh_A            2 MEQHQVWAYQTK--T-HSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPIN-WSNGHVPGVDGAGVIVKVGAKV   77 (315)
T ss_dssp             CCEEEEEEEETT--T-TEEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHHCTTC-CCTTCCCCSEEEEEEEEECTTS
T ss_pred             CcceEEEEEeCC--C-CeeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHcCCCCc-CCCCCEeeeeeEEEEEEeCCCC
Confidence            568999999961  1 34999999999999999999999999999999999998764 3789999999999999999999


Q ss_pred             CCCCCCCEEEecCC--CCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHH
Q psy2960         150 SSLAVGDHVIPDTQ--HLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACG  227 (405)
Q Consensus       150 ~~~~~GdrV~~~~~--~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG  227 (405)
                      ++|++||||++.+.  .+|+|+||++++++.++++|+++++++||+++++++|||+++ +.+++++|++|||+|+ |++|
T Consensus        78 ~~~~vGdrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~Ga-G~vG  155 (315)
T 3goh_A           78 DSKMLGRRVAYHTSLKRHGSFAEFTVLNTDRVMTLPDNLSFERAAALPCPLLTAWQAF-EKIPLTKQREVLIVGF-GAVN  155 (315)
T ss_dssp             CGGGTTCEEEEECCTTSCCSSBSEEEEETTSEEECCTTSCHHHHHTSHHHHHHHHHHH-TTSCCCSCCEEEEECC-SHHH
T ss_pred             CCCCCCCEEEEeCCCCCCcccccEEEEcHHHhccCcCCCCHHHHhhCccHHHHHHHHH-hhcCCCCCCEEEEECC-CHHH
Confidence            99999999998742  369999999999999999999999999999999999999999 7799999999999999 9999


Q ss_pred             HHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccC
Q psy2960         228 QNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSK  306 (405)
Q Consensus       228 ~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~  306 (405)
                      ++++|+|+++|++|++++ ++++    ++.++++|++++++  | .+ +     +.++|+||||+|++....++++++++
T Consensus       156 ~~a~qlak~~Ga~Vi~~~-~~~~----~~~~~~lGa~~v~~--d-~~~v-----~~g~Dvv~d~~g~~~~~~~~~~l~~~  222 (315)
T 3goh_A          156 NLLTQMLNNAGYVVDLVS-ASLS----QALAAKRGVRHLYR--E-PSQV-----TQKYFAIFDAVNSQNAAALVPSLKAN  222 (315)
T ss_dssp             HHHHHHHHHHTCEEEEEC-SSCC----HHHHHHHTEEEEES--S-GGGC-----CSCEEEEECC-------TTGGGEEEE
T ss_pred             HHHHHHHHHcCCEEEEEE-Chhh----HHHHHHcCCCEEEc--C-HHHh-----CCCccEEEECCCchhHHHHHHHhcCC
Confidence            999999999999999998 6544    67888999999995  3 33 4     67999999999998888889999999


Q ss_pred             CEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhh-hc-cHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHH
Q psy2960         307 GVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKE-NK-ESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEA  384 (405)
Q Consensus       307 G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A  384 (405)
                      |+++.+|.....    .....+.+++++....+...... .+ ......+.++++++++++|++++.++++|+++++++|
T Consensus       223 G~~v~~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A  298 (315)
T 3goh_A          223 GHIICIQDRIPA----PIDPAFTRTISYHEIALGALHDFGDRQDWQILMQQGEALLTLIAQGKMEIAAPDIFRFEQMIEA  298 (315)
T ss_dssp             EEEEEECCC--------------CCSEEEEECGGGHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCCCCEEEEGGGHHHH
T ss_pred             CEEEEEeCCCCc----cccchhhhcceeeEEEeecccccCChhHHHHHHHHHHHHHHHHHCCCcccccceEecHHHHHHH
Confidence            999999753321    11123446677777766544321 11 1124566789999999999999999999999999999


Q ss_pred             HHHHhhhcCCCCceEEEEec
Q psy2960         385 LMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       385 ~~~~~~~~~~~~gKvvl~~~  404 (405)
                      |+.+.    +..||+||+++
T Consensus       299 ~~~~~----~~~gKvvi~~~  314 (315)
T 3goh_A          299 LDHSE----QTKLKTVLTLN  314 (315)
T ss_dssp             HHHHH----HHCCCEEEESC
T ss_pred             HHHHH----hcCCcEEEEec
Confidence            99875    56899999986

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=100.00  E-value=2.8e-54  Score=413.60  Aligned_cols=308  Identities=21%  Similarity=0.301  Sum_probs=248.9

Q ss_pred             ccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCC-CCCCCCCCccceEEEEEEEcCC
Q psy2960          70 SYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPI-KPTLPAVPGFEGVGEVVEVGSD  148 (405)
Q Consensus        70 ~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~p~~lG~E~~G~V~~vG~~  148 (405)
                      |.+||++++++++++   +++++.|.|+|+++||||||.++|||++|++.+.|.++. ...+|.++|||++|+|+++|++
T Consensus         1 m~~mka~~~~~~g~~---l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~E~~G~V~~vG~~   77 (344)
T 2h6e_A            1 MVKSKAALLKKFSEP---LSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILGHENAGTIVEVGEL   77 (344)
T ss_dssp             CEEEEBCEECSCCC--------EEEECCCCTTCEEEEEEEEECCHHHHHHHTTSCCCTTCCSSEECCCCEEEEEEEECTT
T ss_pred             CceeEEEEEecCCCC---CeEEEeeCCCCCCCEEEEEEEEEEechhhHHHHcCCCcccCCCCCccccccceEEEEEECCC
Confidence            468999999999754   888999999999999999999999999999999997652 2367999999999999999999


Q ss_pred             CCCCCCCCEEEecC--------------------------CCCCcccceEeec-ccceEEcCCCCChhhhccCCCcHHHH
Q psy2960         149 VSSLAVGDHVIPDT--------------------------QHLGTWRNYGKFN-HDVLMKVPKDIALTEISGITSNPCTA  201 (405)
Q Consensus       149 v~~~~~GdrV~~~~--------------------------~~~G~~a~~~~v~-~~~~~~iP~~~s~~~Aa~~~~~~~ta  201 (405)
                       ++|++||||++.+                          ..+|+|+||++++ ++.++++ +++++++||+++++++||
T Consensus        78 -~~~~~GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~i-~~l~~~~aa~l~~~~~ta  155 (344)
T 2h6e_A           78 -AKVKKGDNVVVYATWGDLTCRYCREGKFNICKNQIIPGQTTNGGFSEYMLVKSSRWLVKL-NSLSPVEAAPLADAGTTS  155 (344)
T ss_dssp             -CCCCTTCEEEECSCBCCSCSTTGGGTCGGGCTTCBCBTTTBCCSSBSEEEESCGGGEEEE-SSSCHHHHGGGGTHHHHH
T ss_pred             -CCCCCCCEEEECCCCCCCCChhhhCCCcccCCCccccccccCCcceeeEEecCcccEEEe-CCCCHHHhhhhhhhhHHH
Confidence             9999999998763                          1369999999999 9999999 999999999999999999


Q ss_pred             HHHHHhh----cCCCCCCEEEEeCCCcHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh-HHH
Q psy2960         202 YRMLKDY----NSLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE-LRN  274 (405)
Q Consensus       202 ~~al~~~----~~~~~g~~VLI~ga~G~vG~~aiqla~~~--G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d-~~~  274 (405)
                      |+++...    +++ +|++|||+|+ |++|++++|+|+++  |++|++++++    +++++.++++|+++++|+++ ...
T Consensus       156 ~~al~~~~~~~~~~-~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga~Vi~~~~~----~~~~~~~~~lGa~~vi~~~~~~~~  229 (344)
T 2h6e_A          156 MGAIRQALPFISKF-AEPVVIVNGI-GGLAVYTIQILKALMKNITIVGISRS----KKHRDFALELGADYVSEMKDAESL  229 (344)
T ss_dssp             HHHHHHHHHHHTTC-SSCEEEEECC-SHHHHHHHHHHHHHCTTCEEEEECSC----HHHHHHHHHHTCSEEECHHHHHHH
T ss_pred             HHHHHhhhhcccCC-CCCEEEEECC-CHHHHHHHHHHHHhcCCCEEEEEeCC----HHHHHHHHHhCCCEEeccccchHH
Confidence            9999874    388 9999999999 99999999999999  9998888754    34578889999999999865 322


Q ss_pred             HhhhcCCCCCcEEEECCCch-hHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHH
Q psy2960         275 ISRDASIPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERK  353 (405)
Q Consensus       275 i~~~t~g~g~Dvvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~  353 (405)
                      +.+.+++.++|+||||+|++ .+..++++++++|+++.+|.... +..++...++.+++++.|++...           .
T Consensus       230 ~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~~-----------~  297 (344)
T 2h6e_A          230 INKLTDGLGASIAIDLVGTEETTYNLGKLLAQEGAIILVGMEGK-RVSLEAFDTAVWNKKLLGSNYGS-----------L  297 (344)
T ss_dssp             HHHHHTTCCEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSS-CCCCCHHHHHHTTCEEEECCSCC-----------H
T ss_pred             HHHhhcCCCccEEEECCCChHHHHHHHHHhhcCCEEEEeCCCCC-CcccCHHHHhhCCcEEEEEecCC-----------H
Confidence            56667677899999999997 66788999999999999986542 34566666778999999987543           3


Q ss_pred             HHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         354 SMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       354 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      +.++++++++++|++++.+ ++|+++++++||+.+.  +++..||+||++
T Consensus       298 ~~~~~~~~l~~~g~i~~~i-~~~~l~~~~~A~~~~~--~~~~~gKvvl~~  344 (344)
T 2h6e_A          298 NDLEDVVRLSESGKIKPYI-IKVPLDDINKAFTNLD--EGRVDGRQVITP  344 (344)
T ss_dssp             HHHHHHHHHHHTTSSCCCE-EEECC------------------CEEEECC
T ss_pred             HHHHHHHHHHHcCCCCcce-EEEeHHHHHHHHHHHH--cCCCceEEEEeC
Confidence            4578899999999999988 9999999999999998  788889999864

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=4.6e-54  Score=412.76  Aligned_cols=311  Identities=20%  Similarity=0.238  Sum_probs=265.6

Q ss_pred             cccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcc-cCC-CCCCCCCCCccceEEEEEEEc
Q psy2960          69 FSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQG-VYP-IKPTLPAVPGFEGVGEVVEVG  146 (405)
Q Consensus        69 ~~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g-~~~-~~~~~p~~lG~E~~G~V~~vG  146 (405)
                      ||++||++++++++..   +++++.|.|+|+++||||||.++|||++|++.+.| .++ ....+|.++|||++|+|+++|
T Consensus         1 ~m~~mka~~~~~~g~~---l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG   77 (348)
T 2d8a_A            1 MSEKMVAIMKTKPGYG---AELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIG   77 (348)
T ss_dssp             --CEEEEEEECSSSSS---CEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCTTHHHHCCSSEECCCEEEEEEEEEC
T ss_pred             CCCcceEEEEECCCCC---EEEEECCCCCCCcCEEEEEEeEEEecHHHHHHHcCCCCCcccCCCCCccCccceEEEEEEC
Confidence            4678999999999842   88999999999999999999999999999999998 443 113578999999999999999


Q ss_pred             CCCCCCCCCCEEEecC--------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHH
Q psy2960         147 SDVSSLAVGDHVIPDT--------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCT  200 (405)
Q Consensus       147 ~~v~~~~~GdrV~~~~--------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~t  200 (405)
                      ++|++|++||||++.+                          ...|+|+||++++++.++++|+++++++||+++ ++.|
T Consensus        78 ~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~-~~~t  156 (348)
T 2d8a_A           78 PGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQE-PLGN  156 (348)
T ss_dssp             TTCCSCCTTCEEEECCEECCSCCC------------CEETTTSSCCSSBSEEEEEGGGEEECCTTSCHHHHTTHH-HHHH
T ss_pred             CCCCcCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCeecCCCCCcCcceEEeChHHeEECCCCCCHHHHHhhh-HHHH
Confidence            9999999999999863                          135999999999999999999999999999886 7889


Q ss_pred             HHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHcCCcEEeChh--hHHH-Hh
Q psy2960         201 AYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-IS  276 (405)
Q Consensus       201 a~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~--d~~~-i~  276 (405)
                      ||+++ +.+++ +|++|||+|+ |++|++++|+|+.+|+ +|+++.++    +++++.++++|+++++|++  ++.+ ++
T Consensus       157 a~~~l-~~~~~-~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~----~~~~~~~~~~Ga~~~~~~~~~~~~~~v~  229 (348)
T 2d8a_A          157 AVDTV-LAGPI-SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPS----DFRRELAKKVGADYVINPFEEDVVKEVM  229 (348)
T ss_dssp             HHHHH-TTSCC-TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSC----HHHHHHHHHHTCSEEECTTTSCHHHHHH
T ss_pred             HHHHH-HhcCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC----HHHHHHHHHhCCCEEECCCCcCHHHHHH
Confidence            99999 55889 9999999999 9999999999999999 89888755    3457888899999999875  3556 88


Q ss_pred             hhcCCCCCcEEEECCCc-hhHHHHHHhcccCCEEEEEeccCCCCcccCc-ccccccCeEEEEEecchhhhhhccHHHHHH
Q psy2960         277 RDASIPKPKLALNCVGG-NSATNLLRTLVSKGVMVTYGGMSREPVQIPT-SAFIFKDITLRGHWMTRWQKENKESAERKS  354 (405)
Q Consensus       277 ~~t~g~g~Dvvld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~-~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~  354 (405)
                      +.|++.++|+||||+|. +.+..++++++++|+++.+|.... +..++. ..++.+++++.|++....          .+
T Consensus       230 ~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~~i~g~~~~~~----------~~  298 (348)
T 2d8a_A          230 DITDGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPG-KVTIDFNNLIIFKALTIYGITGRHL----------WE  298 (348)
T ss_dssp             HHTTTSCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCSS-CCCCCHHHHTTTTTCEEEECCCCCS----------HH
T ss_pred             HHcCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCC-CcccCchHHHHhCCcEEEEecCCCc----------HH
Confidence            88888899999999998 566788999999999999996543 345665 667789999999765321          34


Q ss_pred             HHHHHHHHHHcCcc--cCCcceeee-hhhHHHHHHHHhhhcCCCCceEEEEec
Q psy2960         355 MMNELTEMMRTGKL--AAPAHKFVT-LKNFQEALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       355 ~~~~~~~~~~~g~l--~~~~~~~~~-~~~~~~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                      .++++++++++|++  ++.++++|+ ++++++||+.+.  + +..||+||+++
T Consensus       299 ~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~--~-~~~gKvvi~~~  348 (348)
T 2d8a_A          299 TWYTVSRLLQSGKLNLDPIITHKYKGFDKYEEAFELMR--A-GKTGKVVFMLK  348 (348)
T ss_dssp             HHHHHHHHHHHTCCCCTTTEEEEEESSTTHHHHHHHHH--T-TCCSEEEEEC-
T ss_pred             HHHHHHHHHHcCCCChHHhheeeCCCHHHHHHHHHHHh--C-CCceEEEEeeC
Confidence            57889999999996  456778999 999999999998  6 67899999874

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=1.3e-53  Score=408.00  Aligned_cols=306  Identities=23%  Similarity=0.366  Sum_probs=266.7

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||++++++++.+   +++++.|.|+|++|||||||.++|||++|++.+.|.++....+|.++|||++|+|+++|++|++|
T Consensus         1 Mka~~~~~~g~~---l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~GhE~~G~V~~vG~~v~~~   77 (339)
T 1rjw_A            1 MKAAVVEQFKEP---LKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHL   77 (339)
T ss_dssp             CEEEEBSSTTSC---CEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSC
T ss_pred             CeEEEEcCCCCC---cEEEEeeCCCCCCCEEEEEEEEEeEchhhHHHhcCCCCcCCCCCeeccccceEEEEEECCCCCcC
Confidence            899999999854   88999999999999999999999999999999999776445689999999999999999999999


Q ss_pred             CCCCEEEecC---------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHH
Q psy2960         153 AVGDHVIPDT---------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRML  205 (405)
Q Consensus       153 ~~GdrV~~~~---------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al  205 (405)
                      ++||||++.+                           ..+|+|+||++++++.++++|+++++++||+++++++|||+++
T Consensus        78 ~vGdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa~l~~~~~ta~~~l  157 (339)
T 1rjw_A           78 KVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKAL  157 (339)
T ss_dssp             CTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGCEECCTTSCHHHHGGGGTHHHHHHHHH
T ss_pred             CCCCEEEEecCCCCCCCCchhhCcCcccCCCcceeecCCCCcceeeEEechHHEEECCCCCCHHHhhhhhhhHHHHHHHH
Confidence            9999998632                           1359999999999999999999999999999999999999999


Q ss_pred             HhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChh--hHHH-HhhhcCCC
Q psy2960         206 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDASIP  282 (405)
Q Consensus       206 ~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~--d~~~-i~~~t~g~  282 (405)
                      .. .++++|++|||+|+ |++|++++|+|+.+|++|+++.++    +++++.++++|+++++|++  ++.+ +.+.+  .
T Consensus       158 ~~-~~~~~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~----~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~--~  229 (339)
T 1rjw_A          158 KV-TGAKPGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIG----DEKLELAKELGADLVVNPLKEDAAKFMKEKV--G  229 (339)
T ss_dssp             HH-HTCCTTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSC----HHHHHHHHHTTCSEEECTTTSCHHHHHHHHH--S
T ss_pred             Hh-cCCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCC----HHHHHHHHHCCCCEEecCCCccHHHHHHHHh--C
Confidence            87 48999999999999 889999999999999998888755    3457788899999999865  3555 77777  4


Q ss_pred             CCcEEEECCCc-hhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHH
Q psy2960         283 KPKLALNCVGG-NSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTE  361 (405)
Q Consensus       283 g~Dvvld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  361 (405)
                      ++|+||||+|. ..+..++++++++|+++.+|.... ...++...++.+++++.|++...           .+.++++++
T Consensus       230 ~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~~-----------~~~~~~~~~  297 (339)
T 1rjw_A          230 GVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPE-EMPIPIFDTVLNGIKIIGSIVGT-----------RKDLQEALQ  297 (339)
T ss_dssp             SEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSS-EEEEEHHHHHHTTCEEEECCSCC-----------HHHHHHHHH
T ss_pred             CCCEEEECCCCHHHHHHHHHHhhcCCEEEEecccCC-CCccCHHHHHhCCcEEEEeccCC-----------HHHHHHHHH
Confidence            89999999998 566778999999999999986543 23455556677999999976543           245788999


Q ss_pred             HHHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEec
Q psy2960         362 MMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       362 ~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                      ++++|++++. +++|+++++++||+.+.  +++..||+||+++
T Consensus       298 l~~~g~l~~~-~~~~~l~~~~~A~~~~~--~~~~~gKvvi~~~  337 (339)
T 1rjw_A          298 FAAEGKVKTI-IEVQPLEKINEVFDRML--KGQINGRVVLTLE  337 (339)
T ss_dssp             HHHTTSCCCC-EEEEEGGGHHHHHHHHH--TTCCSSEEEEECC
T ss_pred             HHHcCCCCcc-EEEEcHHHHHHHHHHHH--cCCCceEEEEecC
Confidence            9999999985 67999999999999999  8888999999986

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=6.3e-54  Score=413.62  Aligned_cols=309  Identities=17%  Similarity=0.213  Sum_probs=266.6

Q ss_pred             cccceeEEEEccCCCCccceEeee--ecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEc
Q psy2960          69 FSYLANKLVYNQHGTPLRVVTVEN--ETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVG  146 (405)
Q Consensus        69 ~~~~~~a~~~~~~g~~~~~l~~~~--~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG  146 (405)
                      +|++||++++++++.+   +++++  .|.|+|+++||||||.++|||++|++.+.|.++. ..+|.++|||++|+|+++|
T Consensus         3 ~p~~mka~~~~~~~~~---l~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~p~v~GhE~~G~V~~vG   78 (360)
T 1piw_A            3 YPEKFEGIAIQSHEDW---KNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGN-MKMPLVVGHEIVGKVVKLG   78 (360)
T ss_dssp             TTTCEEEEEECCSSST---TSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSC-CCSSEECCCCEEEEEEEEC
T ss_pred             CChheEEEEEecCCCC---eeEEeccccCCCCCCCeEEEEEEEeccchhhHHHhcCCCCC-CCCCcccCcCceEEEEEeC
Confidence            5789999999998754   77888  9999999999999999999999999999997653 3579999999999999999


Q ss_pred             CCCC-CCCCCCEEEecC----------------------------------CCCCcccceEeecccceEEcCCCCChhhh
Q psy2960         147 SDVS-SLAVGDHVIPDT----------------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEI  191 (405)
Q Consensus       147 ~~v~-~~~~GdrV~~~~----------------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~A  191 (405)
                      ++|+ +|++||||+..+                                  ...|+|+||++++++.++++|+++++++|
T Consensus        79 ~~v~~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~a  158 (360)
T 1piw_A           79 PKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIPSHLA  158 (360)
T ss_dssp             TTCCSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEEECCTTSCHHHH
T ss_pred             CCCCCCCCCCCEEEEecCCCCCCCChhhcCCCcccCcchhhccccccCCCccCCCcceeEEEEchhheEECCCCCCHHHh
Confidence            9999 999999995321                                  13599999999999999999999999999


Q ss_pred             ccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh
Q psy2960         192 SGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE  271 (405)
Q Consensus       192 a~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d  271 (405)
                      |+++++++|||+++.. +++++|++|||+|+ |++|++++|+|+.+|++|+++.+++++    ++.++++|+++++|+++
T Consensus       159 a~l~~~~~ta~~~l~~-~~~~~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~----~~~~~~lGa~~v~~~~~  232 (360)
T 1piw_A          159 APLLCGGLTVYSPLVR-NGCGPGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRK----REDAMKMGADHYIATLE  232 (360)
T ss_dssp             GGGGTHHHHHHHHHHH-TTCSTTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTT----HHHHHHHTCSEEEEGGG
T ss_pred             hhhhhhHHHHHHHHHH-cCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHH----HHHHHHcCCCEEEcCcC
Confidence            9999999999999987 89999999999999 999999999999999999988876554    67788999999998764


Q ss_pred             H-HHHhhhcCCCCCcEEEECCCc---hhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhc
Q psy2960         272 L-RNISRDASIPKPKLALNCVGG---NSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENK  347 (405)
Q Consensus       272 ~-~~i~~~t~g~g~Dvvld~~g~---~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~  347 (405)
                      . ....+..  .++|+||||+|+   ..+..++++++++|+++.+|.... ...++...++.+++++.|++...      
T Consensus       233 ~~~~~~~~~--~~~D~vid~~g~~~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~~------  303 (360)
T 1piw_A          233 EGDWGEKYF--DTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQ-HEMLSLKPYGLKAVSISYSALGS------  303 (360)
T ss_dssp             TSCHHHHSC--SCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCCS-SCCEEECGGGCBSCEEEECCCCC------
T ss_pred             chHHHHHhh--cCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEecCCCC-ccccCHHHHHhCCeEEEEEecCC------
Confidence            3 1122222  489999999998   566778999999999999996543 21455566778999999987543      


Q ss_pred             cHHHHHHHHHHHHHHHHcCcccCCcceeeehhh--HHHHHHHHhhhcCCCCceEEEEec
Q psy2960         348 ESAERKSMMNELTEMMRTGKLAAPAHKFVTLKN--FQEALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~--~~~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                           .+.++++++++++|++++.+ ++|++++  +++||+.+.  +++..||+||+++
T Consensus       304 -----~~~~~~~~~l~~~g~l~~~i-~~~~l~~~~~~~A~~~~~--~~~~~gKvvi~~~  354 (360)
T 1piw_A          304 -----IKELNQLLKLVSEKDIKIWV-ETLPVGEAGVHEAFERME--KGDVRYRFTLVGY  354 (360)
T ss_dssp             -----HHHHHHHHHHHHHTTCCCCE-EEEESSHHHHHHHHHHHH--HTCCSSEEEEECC
T ss_pred             -----HHHHHHHHHHHHhCCCcceE-EEEeccHhHHHHHHHHHH--CCCCceEEEEecC
Confidence                 34578899999999999887 9999999  999999999  7888999999875

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=100.00  E-value=8e-55  Score=415.18  Aligned_cols=320  Identities=22%  Similarity=0.294  Sum_probs=270.6

Q ss_pred             cccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCC
Q psy2960          69 FSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSD  148 (405)
Q Consensus        69 ~~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~  148 (405)
                      ||++||++++++++.+ ..+++++.|.|+|++|||||||.++|||++|++.+.|.++....+|.++|||++|+|+++  +
T Consensus         1 m~~~mka~~~~~~g~~-~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~~--~   77 (330)
T 1tt7_A            1 MSTLFQALQAEKNADD-VSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSS--N   77 (330)
T ss_dssp             -CCEEEEEEECCGGGS-CCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEEC--S
T ss_pred             CCCcceEEEEecCCCC-cceeEeecCCCCCCCCEEEEEEEEEecCHHHHhhhcCCCCCcCCCCccccceEEEEEEEc--C
Confidence            5778999999998743 338899999999999999999999999999999999976554467999999999999996  5


Q ss_pred             CCCCCCCCEEEecC-----CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHH--hhcCCCCCC-EEEEe
Q psy2960         149 VSSLAVGDHVIPDT-----QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLK--DYNSLSPGD-VVIQN  220 (405)
Q Consensus       149 v~~~~~GdrV~~~~-----~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~--~~~~~~~g~-~VLI~  220 (405)
                      +++|++||||++..     ...|+|+||++++++.++++|+++++++||+++++++|||+++.  ..+++++|+ +|||+
T Consensus        78 v~~~~vGdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~VlV~  157 (330)
T 1tt7_A           78 DPRFAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVT  157 (330)
T ss_dssp             STTCCTTCEEEEESTTBTTTBCCSSBSSEEECGGGEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEE
T ss_pred             CCCCCCCCEEEEcccccCCCCCccceeEEEecHHHeEECCCCCCHHHHhhccchHHHHHHHHHHHHhcCcCCCCceEEEE
Confidence            78999999999763     23699999999999999999999999999999999999998875  336899997 99999


Q ss_pred             CCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhH-HH-HhhhcCCCCCcEEEECCCchhHHH
Q psy2960         221 GANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEEL-RN-ISRDASIPKPKLALNCVGGNSATN  298 (405)
Q Consensus       221 ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~-~~-i~~~t~g~g~Dvvld~~g~~~~~~  298 (405)
                      |++|++|++++|+|+.+|++++++++++++    ++.++++|+++++|+++. .+ +.+.+ +.++|+||||+|++.+..
T Consensus       158 Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~----~~~~~~lGa~~v~~~~~~~~~~~~~~~-~~~~d~vid~~g~~~~~~  232 (330)
T 1tt7_A          158 GATGGVGGIAVSMLNKRGYDVVASTGNREA----ADYLKQLGASEVISREDVYDGTLKALS-KQQWQGAVDPVGGKQLAS  232 (330)
T ss_dssp             STTSHHHHHHHHHHHHHTCCEEEEESSSST----HHHHHHHTCSEEEEHHHHCSSCCCSSC-CCCEEEEEESCCTHHHHH
T ss_pred             CCCCHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHcCCcEEEECCCchHHHHHHhh-cCCccEEEECCcHHHHHH
Confidence            999999999999999999999999877554    677888999999987764 23 44444 458999999999988888


Q ss_pred             HHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeeh
Q psy2960         299 LLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTL  378 (405)
Q Consensus       299 ~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~  378 (405)
                      ++++++++|+++.+|........++...++.|++++.|++.....     .....+.++++.+++++|++++.++++|++
T Consensus       233 ~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~-----~~~~~~~~~~~~~~~~~g~l~~~i~~~~~l  307 (330)
T 1tt7_A          233 LLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYCP-----MDVRAAVWERMSSDLKPDQLLTIVDREVSL  307 (330)
T ss_dssp             HHTTEEEEEEEEECCCSSCSCEEECSHHHHTSCCEEEECCSSSCC-----HHHHHHHHHHTTTTSCCSCSTTSEEEEECS
T ss_pred             HHHhhcCCCEEEEEecCCCCccCcchHHHHhcCeEEEEEeccccC-----HHHHHHHHHHHHHHHhcCCcccccceEEcH
Confidence            999999999999999655434445555677899999998532211     123356678888899999999888899999


Q ss_pred             hhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         379 KNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       379 ~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      +++++||+.+.  +++..||+||++
T Consensus       308 ~~~~~A~~~~~--~~~~~gKvvi~~  330 (330)
T 1tt7_A          308 EETPGALKDIL--QNRIQGRVIVKL  330 (330)
T ss_dssp             TTHHHHHHHTT--TTCCSSEEEECC
T ss_pred             HHHHHHHHHHH--cCCCCCeEEEeC
Confidence            99999999998  888899999874

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=3.4e-54  Score=416.62  Aligned_cols=312  Identities=18%  Similarity=0.275  Sum_probs=264.3

Q ss_pred             ccCCcccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEE
Q psy2960          65 SARGFSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVE  144 (405)
Q Consensus        65 ~~~~~~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~  144 (405)
                      ....+|++||++++++++.    +++++.|.|+|++|||||||.|+|||++|++.+.|.++.  .+|.++|||++|+|++
T Consensus        16 ~~~~~p~~mkA~v~~~~~~----l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~--~~p~v~G~e~~G~V~~   89 (370)
T 4ej6_A           16 ENLYFQSMMKAVRLESVGN----ISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFPS--TPPVTLGHEFCGIVVE   89 (370)
T ss_dssp             -----CCEEEEEEEEETTE----EEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTSSCC--CSSEECCCSEEEEEEE
T ss_pred             cccccchheEEEEEecCCc----eEEEEccCCCCCCCeEEEEEEEEeecHHHHHHHcCCCCC--CCCeecCcceEEEEEE
Confidence            3445899999999999865    999999999999999999999999999999999998753  6799999999999999


Q ss_pred             EcCCCCCCCCCCEEEecC--------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcH
Q psy2960         145 VGSDVSSLAVGDHVIPDT--------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNP  198 (405)
Q Consensus       145 vG~~v~~~~~GdrV~~~~--------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~  198 (405)
                      +|++|++|++||||++.+                          ..+|+|+||++++++.++++|+++++++|| ++.++
T Consensus        90 vG~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~~~~~~aa-l~~~~  168 (370)
T 4ej6_A           90 AGSAVRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRAIGIHRDGGFAEYVLVPRKQAFEIPLTLDPVHGA-FCEPL  168 (370)
T ss_dssp             ECTTCCSSCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEECTTSCTTGGG-GHHHH
T ss_pred             ECCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCccccCCCCCCcceEEEEEchhhEEECCCCCCHHHHh-hhhHH
Confidence            999999999999999742                          236999999999999999999999999998 66689


Q ss_pred             HHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHcCCcEEeChh--hHHH-
Q psy2960         199 CTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-  274 (405)
Q Consensus       199 ~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~--d~~~-  274 (405)
                      .|||+++ +.+++++|++|||+|+ |++|++++|+|+++|+ +|+++.++    +++++.++++|+++++|++  ++.+ 
T Consensus       169 ~ta~~~l-~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~----~~~~~~a~~lGa~~vi~~~~~~~~~~  242 (370)
T 4ej6_A          169 ACCLHGV-DLSGIKAGSTVAILGG-GVIGLLTVQLARLAGATTVILSTRQ----ATKRRLAEEVGATATVDPSAGDVVEA  242 (370)
T ss_dssp             HHHHHHH-HHHTCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSC----HHHHHHHHHHTCSEEECTTSSCHHHH
T ss_pred             HHHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC----HHHHHHHHHcCCCEEECCCCcCHHHH
Confidence            9999999 5589999999999998 9999999999999999 55555433    4567889999999999875  3555 


Q ss_pred             Hhh---hcCCCCCcEEEECCCc-hhHHHHHHhcccCCEEEEEeccCCC-CcccCcccccccCeEEEEEecchhhhhhccH
Q psy2960         275 ISR---DASIPKPKLALNCVGG-NSATNLLRTLVSKGVMVTYGGMSRE-PVQIPTSAFIFKDITLRGHWMTRWQKENKES  349 (405)
Q Consensus       275 i~~---~t~g~g~Dvvld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~  349 (405)
                      +++   .|++ ++|+||||+|+ +.+..++++++++|+++.+|..... ...++...++.+++++.|++...        
T Consensus       243 i~~~~~~~~g-g~Dvvid~~G~~~~~~~~~~~l~~~G~vv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~--------  313 (370)
T 4ej6_A          243 IAGPVGLVPG-GVDVVIECAGVAETVKQSTRLAKAGGTVVILGVLPQGEKVEIEPFDILFRELRVLGSFINP--------  313 (370)
T ss_dssp             HHSTTSSSTT-CEEEEEECSCCHHHHHHHHHHEEEEEEEEECSCCCTTCCCCCCHHHHHHTTCEEEECCSCT--------
T ss_pred             HHhhhhccCC-CCCEEEECCCCHHHHHHHHHHhccCCEEEEEeccCCCCccccCHHHHHhCCcEEEEeccCh--------
Confidence            776   6766 99999999996 4667889999999999999965442 45677777888999999987643        


Q ss_pred             HHHHHHHHHHHHHHHcCccc--CCcceeeehhhHHHHHHHHhhhcCC-CCceEEEEec
Q psy2960         350 AERKSMMNELTEMMRTGKLA--APAHKFVTLKNFQEALMNTMSIQGK-SGVKYYIDFR  404 (405)
Q Consensus       350 ~~~~~~~~~~~~~~~~g~l~--~~~~~~~~~~~~~~A~~~~~~~~~~-~~gKvvl~~~  404 (405)
                          ..++++++++++|+++  +.++++|+++++++||+.+.  +++ ..+|++++++
T Consensus       314 ----~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~--~~~~~~~kvv~~~~  365 (370)
T 4ej6_A          314 ----FVHRRAADLVATGAIEIDRMISRRISLDEAPDVISNPA--AAGEVKVLVIPSAE  365 (370)
T ss_dssp             ----TCHHHHHHHHHTTCSCCGGGEEEEECGGGHHHHHHSCC--CTTCSEEEECCC--
T ss_pred             ----HHHHHHHHHHHcCCCChhHcEEEEEEHHHHHHHHHHHH--cCCCCeEEEEEccc
Confidence                1268889999999996  45789999999999999998  665 5589988875

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.5e-53  Score=413.60  Aligned_cols=311  Identities=21%  Similarity=0.282  Sum_probs=269.5

Q ss_pred             cccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCC
Q psy2960          69 FSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSD  148 (405)
Q Consensus        69 ~~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~  148 (405)
                      +..+||+++++++++.   +++++.|.|+|+++||||||.++|||++|++.+.|.++. ..+|.++|||++|+|+++| +
T Consensus        14 ~~~~mka~~~~~~g~~---l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~-~~~P~v~GhE~~G~V~~vG-~   88 (380)
T 1vj0_A           14 MGLKAHAMVLEKFNQP---LVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPR-VPLPIILGHEGAGRVVEVN-G   88 (380)
T ss_dssp             CCEEEEEEEBCSTTSC---CEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTT-CCSSBCCCCEEEEEEEEES-S
T ss_pred             hhhheEEEEEecCCCC---eEEEEccCCCCCCCEEEEEEeEEeecccchHHhcCCCCC-CCCCcccCcCcEEEEEEeC-C
Confidence            4567999999999832   889999999999999999999999999999999997652 3679999999999999999 9


Q ss_pred             CC------CCCCCCEEEecC-----------------------------------CCCCcccceEee-cccceEEcCCCC
Q psy2960         149 VS------SLAVGDHVIPDT-----------------------------------QHLGTWRNYGKF-NHDVLMKVPKDI  186 (405)
Q Consensus       149 v~------~~~~GdrV~~~~-----------------------------------~~~G~~a~~~~v-~~~~~~~iP~~~  186 (405)
                      |+      +|++||||++.+                                   ...|+|+||+++ +++.++++|+++
T Consensus        89 V~~~~~~~~~~vGdrV~~~~~~~cg~C~~C~~~g~~~~C~~~~~~g~~~~~~~~~~~~G~~aey~~v~~~~~~~~iP~~l  168 (380)
T 1vj0_A           89 EKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKD  168 (380)
T ss_dssp             CCBCTTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEECTTCCEEEECTTS
T ss_pred             ccccccCCCCCCCCEEEEcccCCCCCCHHHhcCCCcccCCCcceeccccccCCCCCCCccccceEEEcccceEEECCCCC
Confidence            99      999999999742                                   226999999999 999999999999


Q ss_pred             Chh-hhccCCCcHHHHHHHHHhhcC-CCCCCEEEEeCCCcHHHHHHHHHHHHcC-CcEEEEecCCcchHHHHHHHHHcCC
Q psy2960         187 ALT-EISGITSNPCTAYRMLKDYNS-LSPGDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGA  263 (405)
Q Consensus       187 s~~-~Aa~~~~~~~ta~~al~~~~~-~~~g~~VLI~ga~G~vG~~aiqla~~~G-~~v~~~~~~~~~~~~~~~~~~~lg~  263 (405)
                      +++ +||+++ +++|||+++.. ++ +++|++|||+| +|++|++++|+|+.+| ++|+++++++    ++++.++++|+
T Consensus       169 ~~~~~Aa~~~-~~~ta~~al~~-~~~~~~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~----~~~~~~~~lGa  241 (380)
T 1vj0_A          169 DLDVLAMAMC-SGATAYHAFDE-YPESFAGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSP----NRLKLAEEIGA  241 (380)
T ss_dssp             CHHHHHHHTT-HHHHHHHHHHT-CSSCCBTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCH----HHHHHHHHTTC
T ss_pred             ChHHhHhhhc-HHHHHHHHHHh-cCCCCCCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcCCH----HHHHHHHHcCC
Confidence            999 777776 99999999954 78 99999999999 6999999999999999 5998887553    45788899999


Q ss_pred             cEEeChh-----hHHH-HhhhcCCCCCcEEEECCCch-hHHHHHHhcccCCEEEEEeccC-CCCcccCccc-ccccCeEE
Q psy2960         264 DYVFTEE-----ELRN-ISRDASIPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMS-REPVQIPTSA-FIFKDITL  334 (405)
Q Consensus       264 ~~v~~~~-----d~~~-i~~~t~g~g~Dvvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~-~~~k~~~~  334 (405)
                      +++++++     ++.+ +++.+++.++|+||||+|++ .+..++++++++|+++.+|... ..+..++... ++.+++++
T Consensus       242 ~~vi~~~~~~~~~~~~~v~~~~~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i  321 (380)
T 1vj0_A          242 DLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATF  321 (380)
T ss_dssp             SEEEETTTSCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCCCEEECHHHHTTTTTCEE
T ss_pred             cEEEeccccCcchHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCCCeeEchHHHHHhCCeEE
Confidence            9999865     4555 88888888999999999974 6678899999999999999655 3244566666 78899999


Q ss_pred             EEEecchhhhhhccHHHHHHHHHHHHHHHHc--CcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEecC
Q psy2960         335 RGHWMTRWQKENKESAERKSMMNELTEMMRT--GKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ  405 (405)
Q Consensus       335 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~~~  405 (405)
                      .|++...           .+.++++++++++  |++++.++++|+++++++||+.+.  +++.. |+||++++
T Consensus       322 ~g~~~~~-----------~~~~~~~~~l~~~~~g~l~~~i~~~~~l~~~~~A~~~~~--~~~~~-Kvvl~~~g  380 (380)
T 1vj0_A          322 KGIWVSD-----------TSHFVKTVSITSRNYQLLSKLITHRLPLKEANKALELME--SREAL-KVILYPEG  380 (380)
T ss_dssp             EECCCCC-----------HHHHHHHHHHHHTCHHHHGGGCCEEEEGGGHHHHHHHHH--HTSCS-CEEEECC-
T ss_pred             EEeecCC-----------HHHHHHHHHHHHhhcCCeeeEEEEEEeHHHHHHHHHHHh--cCCCc-eEEEEeCC
Confidence            9987643           3458889999999  999888899999999999999998  78888 99999863

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=100.00  E-value=1.8e-53  Score=409.89  Aligned_cols=309  Identities=19%  Similarity=0.262  Sum_probs=265.0

Q ss_pred             cccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCC
Q psy2960          69 FSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSD  148 (405)
Q Consensus        69 ~~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~  148 (405)
                      +|++|+++.+.++.+.   +++++.|.|+|++|||||||.++|||++|++.+.|.++. ..+|.++|||++|+|+++|++
T Consensus         6 ~~m~~~a~~~~~~~~~---l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~vG~~   81 (357)
T 2cf5_A            6 AERKTTGWAARDPSGI---LSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGM-SNYPMVPGHEVVGEVVEVGSD   81 (357)
T ss_dssp             CCCEEEEEEECSTTCC---EEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHTCTTTC-CCSSBCCCCEEEEEEEEECSS
T ss_pred             CcceeEEEEEccCCCC---cEEEEecCCCCCCCEEEEEEEEEeecchhhhhhcCCCCC-CCCCeecCcceeEEEEEECCC
Confidence            4778999888876543   899999999999999999999999999999999987653 367999999999999999999


Q ss_pred             CCCCCCCCEEEecC----------------------------------CCCCcccceEeecccceEEcCCCCChhhhccC
Q psy2960         149 VSSLAVGDHVIPDT----------------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGI  194 (405)
Q Consensus       149 v~~~~~GdrV~~~~----------------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~  194 (405)
                      |++|++||||++.+                                  ..+|+|+||++++++.++++|+++++++||++
T Consensus        82 v~~~~vGdrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~ls~~~aa~l  161 (357)
T 2cf5_A           82 VSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQPTQGGFAKATVVHQKFVVKIPEGMAVEQAAPL  161 (357)
T ss_dssp             CCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCTTSCBCCCSSBSCEEEEGGGEEECCSSCCHHHHTGG
T ss_pred             CCCCCCCCEEEEcCCCCCCCCChHHhCcCcccCCCccccccccccCCCCCCCccccEEEechhhEEECcCCCCHHHhhhh
Confidence            99999999998531                                  14699999999999999999999999999999


Q ss_pred             CCcHHHHHHHHHhhcCCC-CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHH-HcCCcEEeChhhH
Q psy2960         195 TSNPCTAYRMLKDYNSLS-PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGADYVFTEEEL  272 (405)
Q Consensus       195 ~~~~~ta~~al~~~~~~~-~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~-~lg~~~v~~~~d~  272 (405)
                      +++++|||+++.. .+++ +|++|||+|+ |++|++++|+|+.+|++|+++++++++    ++.++ ++|+++++++++.
T Consensus       162 ~~~~~ta~~~l~~-~~~~~~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~~~~~~----~~~~~~~lGa~~vi~~~~~  235 (357)
T 2cf5_A          162 LCAGVTVYSPLSH-FGLKQPGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSNKK----REEALQDLGADDYVIGSDQ  235 (357)
T ss_dssp             GTHHHHHHHHHHH-TSTTSTTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSTTH----HHHHHTTSCCSCEEETTCH
T ss_pred             hhhHHHHHHHHHh-cCCCCCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCChHH----HHHHHHHcCCceeeccccH
Confidence            9999999999976 6888 9999999997 999999999999999999988866543    56666 8999999988764


Q ss_pred             HHHhhhcCCCCCcEEEECCCch-hHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHH
Q psy2960         273 RNISRDASIPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAE  351 (405)
Q Consensus       273 ~~i~~~t~g~g~Dvvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~  351 (405)
                      +.+.+.+  .++|+||||+|++ .+..++++++++|+++.+|........++.. ++.+++++.|++...          
T Consensus       236 ~~~~~~~--~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~-~~~~~~~i~g~~~~~----------  302 (357)
T 2cf5_A          236 AKMSELA--DSLDYVIDTVPVHHALEPYLSLLKLDGKLILMGVINNPLQFLTPL-LMLGRKVITGSFIGS----------  302 (357)
T ss_dssp             HHHHHST--TTEEEEEECCCSCCCSHHHHTTEEEEEEEEECSCCSSCCCCCHHH-HHHHTCEEEECCSCC----------
T ss_pred             HHHHHhc--CCCCEEEECCCChHHHHHHHHHhccCCEEEEeCCCCCCccccCHH-HHhCccEEEEEccCC----------
Confidence            3366665  3799999999976 5788999999999999999654322224445 778999999987643          


Q ss_pred             HHHHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEec
Q psy2960         352 RKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       352 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                       .+.++++++++++|++++.+ ++||++++++||+.+.  +++..||+||+++
T Consensus       303 -~~~~~~~~~l~~~g~l~~~~-~~~~l~~~~~A~~~~~--~~~~~gKvvi~~~  351 (357)
T 2cf5_A          303 -MKETEEMLEFCKEKGLSSII-EVVKMDYVNTAFERLE--KNDVRYRFVVDVE  351 (357)
T ss_dssp             -HHHHHHHHHHHHHTTCCCCE-EEEEGGGHHHHHHHHH--TTCSSSEEEEETT
T ss_pred             -HHHHHHHHHHHHcCCCCCce-EEEeHHHHHHHHHHHH--CCCCceEEEEeCC
Confidence             24578899999999999865 7999999999999999  8888999999875

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=100.00  E-value=4e-53  Score=406.86  Aligned_cols=308  Identities=17%  Similarity=0.223  Sum_probs=262.7

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhh-hhcccCCCCCCCCCCCccceEEEEEEEcCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADIN-TIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSS  151 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~-~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~  151 (405)
                      |||++++++++    +++++.|.|+|++|||||||.++|||++|++ ++.|.++.  .+|.++|||++|+|+++|++|++
T Consensus         1 MkA~~~~~~~~----~~~~e~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~--~~p~v~G~E~~G~V~~vG~~v~~   74 (352)
T 3fpc_A            1 MKGFAMLSIGK----VGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGE--RHNMILGHEAVGEVVEVGSEVKD   74 (352)
T ss_dssp             CEEEEEEETTE----EEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTCC--CSSEECCCEEEEEEEEECTTCCS
T ss_pred             CeEEEEccCCC----ceEEeCCCCCCCCCeEEEEeCEEeEcccchHHHhCCCCCC--CCCcccCCcceEEEEEECCCCCc
Confidence            89999999987    7889999999999999999999999999999 66887764  57999999999999999999999


Q ss_pred             CCCCCEEEecC-----------------------------CCCCcccceEeeccc--ceEEcCCCCChhhhccCCCcHHH
Q psy2960         152 LAVGDHVIPDT-----------------------------QHLGTWRNYGKFNHD--VLMKVPKDIALTEISGITSNPCT  200 (405)
Q Consensus       152 ~~~GdrV~~~~-----------------------------~~~G~~a~~~~v~~~--~~~~iP~~~s~~~Aa~~~~~~~t  200 (405)
                      |++||||++.+                             ..+|+|+||+.+++.  .++++|+++++++||+++.++.|
T Consensus        75 ~~vGdrV~~~~~~~c~~c~~c~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~~~~~iP~~~~~~~aa~~~~~~~t  154 (352)
T 3fpc_A           75 FKPGDRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKDGVFGEFFHVNDADMNLAHLPKEIPLEAAVMIPDMMTT  154 (352)
T ss_dssp             CCTTCEEEECSBCCCSSSHHHHTTCGGGTTSTTTTBCBTTTBCCSSBSCEEESSHHHHCEECCTTSCHHHHTTTTTHHHH
T ss_pred             CCCCCEEEEccccCCCCchhhcCCCcCCccccccccccccCCCCcccceEEeccccCeEEECCCCCCHHHHhhccchhHH
Confidence            99999999632                             136999999999976  89999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-Hh
Q psy2960         201 AYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-IS  276 (405)
Q Consensus       201 a~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~  276 (405)
                      ||+++ +.+++++|++|||+|+ |++|++++|+|+++|+ +|+++.++    +++++.++++|+++++|+++  +.+ ++
T Consensus       155 a~~al-~~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~----~~~~~~~~~lGa~~vi~~~~~~~~~~v~  228 (352)
T 3fpc_A          155 GFHGA-ELANIKLGDTVCVIGI-GPVGLMSVAGANHLGAGRIFAVGSR----KHCCDIALEYGATDIINYKNGDIVEQIL  228 (352)
T ss_dssp             HHHHH-HHTTCCTTCCEEEECC-SHHHHHHHHHHHTTTCSSEEEECCC----HHHHHHHHHHTCCEEECGGGSCHHHHHH
T ss_pred             HHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEECCC----HHHHHHHHHhCCceEEcCCCcCHHHHHH
Confidence            99999 5589999999999997 9999999999999999 67776533    45688999999999999754  566 89


Q ss_pred             hhcCCCCCcEEEECCCc-hhHHHHHHhcccCCEEEEEeccCCC-CcccCcc--cccccCeEEEEEecchhhhhhccHHHH
Q psy2960         277 RDASIPKPKLALNCVGG-NSATNLLRTLVSKGVMVTYGGMSRE-PVQIPTS--AFIFKDITLRGHWMTRWQKENKESAER  352 (405)
Q Consensus       277 ~~t~g~g~Dvvld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~--~~~~k~~~~~g~~~~~~~~~~~~~~~~  352 (405)
                      +.|++.++|+||||+|+ +.+..++++++++|+++.+|..... ..+++..  ....+++++.+++...          .
T Consensus       229 ~~t~g~g~D~v~d~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~----------~  298 (352)
T 3fpc_A          229 KATDGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLGEGDNIDIPRSEWGVGMGHKHIHGGLCPG----------G  298 (352)
T ss_dssp             HHTTTCCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSCSEEEEETTTTGGGTBCEEEEEBCCCC----------H
T ss_pred             HHcCCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEecccCCCCceecchhHhhhhccccEEEEeeccC----------c
Confidence            99999999999999999 4677889999999999999965432 1222221  2235788998876532          1


Q ss_pred             HHHHHHHHHHHHcCcccCC--cceeee-hhhHHHHHHHHhhhcCCC-CceEEEEec
Q psy2960         353 KSMMNELTEMMRTGKLAAP--AHKFVT-LKNFQEALMNTMSIQGKS-GVKYYIDFR  404 (405)
Q Consensus       353 ~~~~~~~~~~~~~g~l~~~--~~~~~~-~~~~~~A~~~~~~~~~~~-~gKvvl~~~  404 (405)
                      .+.++++++++++|++++.  ++++|+ ++++++||+.+.  +++. .+|+||++.
T Consensus       299 ~~~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~--~~~~~~~Kvvi~~~  352 (352)
T 3fpc_A          299 RLRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMK--DKPKDLIKPVVILA  352 (352)
T ss_dssp             HHHHHHHHHHHHTTSCCGGGGEEEEEESTTHHHHHHHHHH--SCCTTCSEEEEECC
T ss_pred             hhHHHHHHHHHHcCCCChhHhheeeCCCHHHHHHHHHHHH--hCCCCcEEEEEEeC
Confidence            3458899999999999875  678999 999999999998  6544 599999874

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=7.6e-54  Score=408.08  Aligned_cols=318  Identities=21%  Similarity=0.301  Sum_probs=264.7

Q ss_pred             ccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCC
Q psy2960          70 SYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDV  149 (405)
Q Consensus        70 ~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v  149 (405)
                      |++||++++++++.+ ..+++++.|.|+|+++||||||.++|||++|++.+.|.++....+|.++|||++|+|+++  ++
T Consensus         1 m~~mka~~~~~~g~~-~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~--~v   77 (328)
T 1xa0_A            1 MSAFQAFVVNKTETE-FTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVSS--QH   77 (328)
T ss_dssp             CCEEEEEEEEEETTE-EEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEEC--CS
T ss_pred             CCcceEEEEecCCCc-ceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHhhcCCCCCCCCCCcccCcceEEEEEec--CC
Confidence            457999999998853 348899999999999999999999999999999999876544467999999999999995  57


Q ss_pred             CCCCCCCEEEecC-----CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHH--hhcCCCCCC-EEEEeC
Q psy2960         150 SSLAVGDHVIPDT-----QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLK--DYNSLSPGD-VVIQNG  221 (405)
Q Consensus       150 ~~~~~GdrV~~~~-----~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~--~~~~~~~g~-~VLI~g  221 (405)
                      ++|++||||++..     ...|+|+||++++++.++++|+++++++||+++++++|||+++.  ..+++++|+ +|||+|
T Consensus        78 ~~~~vGdrV~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~~g~~~VlV~G  157 (328)
T 1xa0_A           78 PRFREGDEVIATGYEIGVTHFGGYSEYARLHGEWLVPLPKGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTG  157 (328)
T ss_dssp             SSCCTTCEEEEESTTBTTTBCCSSBSEEEECGGGCEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESS
T ss_pred             CCCCCCCEEEEccccCCCCCCccceeEEEechHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHHhhcCCCCCCceEEEec
Confidence            8999999999753     23699999999999999999999999999999999999998875  336899997 999999


Q ss_pred             CCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhH-HH-HhhhcCCCCCcEEEECCCchhHHHH
Q psy2960         222 ANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEEL-RN-ISRDASIPKPKLALNCVGGNSATNL  299 (405)
Q Consensus       222 a~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~-~~-i~~~t~g~g~Dvvld~~g~~~~~~~  299 (405)
                      ++|++|++++|+|+.+|++|+++++++++    ++.++++|+++++|+++. .+ +.+.+ +.++|+||||+|++.+..+
T Consensus       158 a~G~vG~~~~q~a~~~Ga~vi~~~~~~~~----~~~~~~lGa~~~i~~~~~~~~~~~~~~-~~~~d~vid~~g~~~~~~~  232 (328)
T 1xa0_A          158 ATGGVGSLAVSMLAKRGYTVEASTGKAAE----HDYLRVLGAKEVLAREDVMAERIRPLD-KQRWAAAVDPVGGRTLATV  232 (328)
T ss_dssp             TTSHHHHHHHHHHHHTTCCEEEEESCTTC----HHHHHHTTCSEEEECC---------CC-SCCEEEEEECSTTTTHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHcCCcEEEecCCcHHHHHHHhc-CCcccEEEECCcHHHHHHH
Confidence            99999999999999999999999877554    677889999999987654 33 45444 4589999999999888889


Q ss_pred             HHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehh
Q psy2960         300 LRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLK  379 (405)
Q Consensus       300 ~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~  379 (405)
                      +++++++|+++.+|........++...++.|++++.|++.....     .....+.++++.+++++| +++ ++++|+++
T Consensus       233 ~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~-----~~~~~~~~~~~~~~~~~g-l~~-~~~~~~l~  305 (328)
T 1xa0_A          233 LSRMRYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGIDSVYCP-----MDLRLRIWERLAGDLKPD-LER-IAQEISLA  305 (328)
T ss_dssp             HHTEEEEEEEEECSCCSSSCCCCCSHHHHHTTCEEEECCSSSCC-----HHHHHHHHHHHHTTTCCC-HHH-HEEEEEGG
T ss_pred             HHhhccCCEEEEEeecCCCCCCCchhhhhhcCceEEEEecccCC-----HHHHHHHHHHHHHHHHcC-Cce-eeeEeCHH
Confidence            99999999999999655434445555677899999997532211     123356678888888888 877 57999999


Q ss_pred             hHHHHHHHHhhhcCCCCceEEEEec
Q psy2960         380 NFQEALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       380 ~~~~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                      ++++||+.+.  +++..||+||+++
T Consensus       306 ~~~~A~~~~~--~~~~~gKvvv~~~  328 (328)
T 1xa0_A          306 ELPQALKRIL--RGELRGRTVVRLA  328 (328)
T ss_dssp             GHHHHHHHHH--HTCCCSEEEEECC
T ss_pred             HHHHHHHHHH--cCCCCCeEEEEeC
Confidence            9999999998  7888999999874

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=100.00  E-value=4.6e-54  Score=450.54  Aligned_cols=347  Identities=21%  Similarity=0.247  Sum_probs=295.6

Q ss_pred             cccchhHHHHHHHhhhcccccceeeccccccCC-----------------------------c-----------ccceeE
Q psy2960          36 PAKVVNVVEEELLKVMSTELCTYISLLDTSARG-----------------------------F-----------SYLANK   75 (405)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~-----------~~~~~a   75 (405)
                      ..++.++..||+.+++++|+|.++..+|.+...                             .           ......
T Consensus       133 ~~~p~~a~v~GL~Rtlr~E~p~~~~~lDld~~~~~~~~l~~~~~~~E~E~a~r~G~~~V~Rl~~~~~~~~~~~~~~~~~~  212 (795)
T 3slk_A          133 VTDLAQAALWGLLRSTQTEHPDRFVLVDVPEPAQLLPALPGVLACGEPQLALRRGGAHAPRLAGLGSDDVLPVPDGTGWR  212 (795)
T ss_dssp             CSCHHHHHHHHHHHHHHHHSTTSEEEEECSSTTSHHHHHHHHHHTCCSEEEECSSCEECCEEEESCSSCCCCCCCSSSCC
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCCeEEEECCCCcchHHHHHHhccCCCceEEEECCcEEEeeeeccccccccCCCCCceEE
Confidence            368999999999999999999877777665321                             0           012345


Q ss_pred             EEEccCCCCccceEeeeecC--CCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCCC
Q psy2960          76 LVYNQHGTPLRVVTVENETL--NSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLA  153 (405)
Q Consensus        76 ~~~~~~g~~~~~l~~~~~~~--p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~  153 (405)
                      +.+..+|.+ +.+++++.|.  |+|++|||+|||+++|||++|++++.|.++.    |.++|||++|+|+++|++|++|+
T Consensus       213 l~~~~~G~~-~~L~~~~~~~p~~~~~~~eVlV~V~a~gin~~D~~~~~G~~~~----~~~lG~E~aG~V~~vG~~V~~~~  287 (795)
T 3slk_A          213 LEATRPGSL-DGLALVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYPG----VASLGSEGAGVVVETGPGVTGLA  287 (795)
T ss_dssp             EEESSTTSS-TTEEECCCHHHHSCCCSSEEEEEEEEEEECHHHHHHTTTCCSS----CCCSCCCEEEEEEEECSSCCSSC
T ss_pred             EecCCCCCc-cceEEEeCCccCCCCCCCEEEEEEEEEccCHHHHHHHcCCCCC----CccccceeEEEEEEeCCCCCcCC
Confidence            566677776 5688888875  5789999999999999999999999998753    56899999999999999999999


Q ss_pred             CCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHH
Q psy2960         154 VGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQI  233 (405)
Q Consensus       154 ~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiql  233 (405)
                      +||||+++.  .|+|+||++++++.++++|+++++++||+++++++|||+++.+.+++++|++|||+|++|++|++++|+
T Consensus       288 vGDrV~~~~--~G~~ae~~~v~~~~~~~iP~~ls~~~AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~gaaGgvG~~aiql  365 (795)
T 3slk_A          288 PGDRVMGMI--PKAFGPLAVADHRMVTRIPAGWSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQL  365 (795)
T ss_dssp             TTCEEEECC--SSCSSSEEEEETTSEEECCTTCCHHHHHHHHHHHHHHHCCCCCCTCCCTTCCEEEESTTBHHHHHHHHH
T ss_pred             CCCEEEEEe--cCCCcCEEEeehHHEEECCCCCCHHHHHhhhHHHHHHHHHHHHHhCCCCCCEEEEecCCCHHHHHHHHH
Confidence            999999983  599999999999999999999999999999999999999999889999999999999999999999999


Q ss_pred             HHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEE
Q psy2960         234 ARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMV  310 (405)
Q Consensus       234 a~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v  310 (405)
                      ||++|++|+++++++ +    ++.++ +|+++++|+++  +.+ +++.|+++|+|+||||+|++.+..++++++++|+|+
T Consensus       366 Ak~~Ga~V~~t~~~~-k----~~~l~-lga~~v~~~~~~~~~~~i~~~t~g~GvDvVld~~gg~~~~~~l~~l~~~Gr~v  439 (795)
T 3slk_A          366 ARHLGAEVYATASED-K----WQAVE-LSREHLASSRTCDFEQQFLGATGGRGVDVVLNSLAGEFADASLRMLPRGGRFL  439 (795)
T ss_dssp             HHHTTCCEEEECCGG-G----GGGSC-SCGGGEECSSSSTHHHHHHHHSCSSCCSEEEECCCTTTTHHHHTSCTTCEEEE
T ss_pred             HHHcCCEEEEEeChH-H----hhhhh-cChhheeecCChhHHHHHHHHcCCCCeEEEEECCCcHHHHHHHHHhcCCCEEE
Confidence            999999999998654 3    23333 99999998764  666 999999999999999999999999999999999999


Q ss_pred             EEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHHhh
Q psy2960         311 TYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMS  390 (405)
Q Consensus       311 ~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~  390 (405)
                      ++|....... ... ....+++++.++.+..     ..+....+.++++++++++|++++.++++|+++++++||+.|. 
T Consensus       440 ~iG~~~~~~~-~~~-~~~~~~~~~~~~~l~~-----~~~~~~~~~l~~~~~l~~~g~l~p~~~~~~~l~~~~eA~~~l~-  511 (795)
T 3slk_A          440 ELGKTDVRDP-VEV-ADAHPGVSYQAFDTVE-----AGPQRIGEMLHELVELFEGRVLEPLPVTAWDVRQAPEALRHLS-  511 (795)
T ss_dssp             ECCSTTCCCH-HHH-HHHSSSEEEEECCGGG-----GHHHHHHHHHHHHHHHHHTTSCCCCCEEEEEGGGHHHHHHHHH-
T ss_pred             EeccccccCc-ccc-cccCCCCEEEEeeccc-----cCHHHHHHHHHHHHHHHHcCCcCCCcceeEcHHHHHHHHHHHh-
Confidence            9996543221 111 1224788888876542     1235667889999999999999999999999999999999999 


Q ss_pred             hcCCCCceEEEEec
Q psy2960         391 IQGKSGVKYYIDFR  404 (405)
Q Consensus       391 ~~~~~~gKvvl~~~  404 (405)
                       ++++.||+||+++
T Consensus       512 -~g~~~GKvVl~~~  524 (795)
T 3slk_A          512 -QARHVGKLVLTMP  524 (795)
T ss_dssp             -HTCCCBEEEEECC
T ss_pred             -cCCccceEEEecC
Confidence             8999999999975

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3e-53  Score=407.75  Aligned_cols=311  Identities=19%  Similarity=0.251  Sum_probs=261.7

Q ss_pred             cccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcc-cCC-CCCCCCCCCccceEEEEEEEc
Q psy2960          69 FSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQG-VYP-IKPTLPAVPGFEGVGEVVEVG  146 (405)
Q Consensus        69 ~~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g-~~~-~~~~~p~~lG~E~~G~V~~vG  146 (405)
                      |+++||++++++++.    +++++.|.|+|+++||||||.++|||++|++.+.+ .++ ....+|.++|||++|+|+++|
T Consensus         1 m~~~mka~~~~~~~~----l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~vG   76 (352)
T 1e3j_A            1 MASDNLSAVLYKQND----LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVG   76 (352)
T ss_dssp             ---CCEEEEEEETTE----EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEEC
T ss_pred             CcccCEEEEEEcCCc----EEEEEecCCCCCCCeEEEEEEEEEEChhhHHHHcCCCCccccCCCCccccccceEEEEEeC
Confidence            356799999998764    88999999999999999999999999999998874 332 123578999999999999999


Q ss_pred             CCCCCCCCCCEEEecC---------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHH
Q psy2960         147 SDVSSLAVGDHVIPDT---------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPC  199 (405)
Q Consensus       147 ~~v~~~~~GdrV~~~~---------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~  199 (405)
                      ++|++|++||||++.+                           ...|+|+||+++++++++++|+++++++||++ .++.
T Consensus        77 ~~v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~-~~~~  155 (352)
T 1e3j_A           77 KNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNVSLEEGALL-EPLS  155 (352)
T ss_dssp             TTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTSCHHHHHTH-HHHH
T ss_pred             CCCCCCCCCCEEEEcCcCCCCCChhhhCcCcccCCCCcccCcCCCCccceeEEEeChHHeEECcCCCCHHHHHhh-chHH
Confidence            9999999999999752                           13699999999999999999999999999976 4788


Q ss_pred             HHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChh---hHHH-H
Q psy2960         200 TAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE---ELRN-I  275 (405)
Q Consensus       200 ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~---d~~~-i  275 (405)
                      |||+++ +.+++++|++|||+|+ |++|++++|+|+++|++|+++.++    +++++.++++|+++++|++   ++.+ +
T Consensus       156 ta~~al-~~~~~~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~----~~~~~~~~~lGa~~~~~~~~~~~~~~~i  229 (352)
T 1e3j_A          156 VGVHAC-RRAGVQLGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARS----PRRLEVAKNCGADVTLVVDPAKEEESSI  229 (352)
T ss_dssp             HHHHHH-HHHTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESC----HHHHHHHHHTTCSEEEECCTTTSCHHHH
T ss_pred             HHHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCC----HHHHHHHHHhCCCEEEcCcccccHHHHH
Confidence            999999 5589999999999997 999999999999999998777644    3457888999999999865   3444 7


Q ss_pred             hhhcC---CCCCcEEEECCCch-hHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHH
Q psy2960         276 SRDAS---IPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAE  351 (405)
Q Consensus       276 ~~~t~---g~g~Dvvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~  351 (405)
                      .+.++   +.++|+||||+|++ .+..++++++++|+++.+|... .+..++...++.+++++.+++...          
T Consensus       230 ~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~-~~~~~~~~~~~~~~~~i~g~~~~~----------  298 (352)
T 1e3j_A          230 IERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGS-QMVTVPLVNACAREIDIKSVFRYC----------  298 (352)
T ss_dssp             HHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCS-SCCCCCHHHHHTTTCEEEECCSCS----------
T ss_pred             HHHhccccCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCC-CCccccHHHHHhcCcEEEEeccch----------
Confidence            77775   67899999999986 4577899999999999998532 334566667788999999976431          


Q ss_pred             HHHHHHHHHHHHHcCccc--CCcceeeehhhHHHHHHHHhhhcCC-CCceEEEEecC
Q psy2960         352 RKSMMNELTEMMRTGKLA--APAHKFVTLKNFQEALMNTMSIQGK-SGVKYYIDFRQ  405 (405)
Q Consensus       352 ~~~~~~~~~~~~~~g~l~--~~~~~~~~~~~~~~A~~~~~~~~~~-~~gKvvl~~~~  405 (405)
                        +.++++++++++|+++  +.++++|+++++++||+.+.  +++ ..+|+||+++|
T Consensus       299 --~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~--~~~~~~~Kvvi~~~~  351 (352)
T 1e3j_A          299 --NDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAAR--KKADNTIKVMISCRQ  351 (352)
T ss_dssp             --SCHHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHH--HCCTTCSEEEEECCC
T ss_pred             --HHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHh--cCCCCceEEEEecCC
Confidence              2377889999999975  45778999999999999998  777 68999999875

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=100.00  E-value=2.6e-53  Score=409.88  Aligned_cols=309  Identities=18%  Similarity=0.182  Sum_probs=263.0

Q ss_pred             CcccceeEEEEccCCCCccceEeeeecCC--------CCCCCeEEEEEEEeecChhhhhhhccc-CC-CCCCCCCCCccc
Q psy2960          68 GFSYLANKLVYNQHGTPLRVVTVENETLN--------SVQKHEVVVKMLVAPVNPADINTIQGV-YP-IKPTLPAVPGFE  137 (405)
Q Consensus        68 ~~~~~~~a~~~~~~g~~~~~l~~~~~~~p--------~~~~~eVlVkv~a~gi~~~D~~~~~g~-~~-~~~~~p~~lG~E  137 (405)
                      .+|++||++++++++.    +++++.|.|        +|++|||||||.++|||++|++.+.+. ++ ....+|.++|||
T Consensus         4 ~~~~~mka~~~~~~~~----l~~~~~~~P~~~~~~~~~~~~~eVlVkv~a~gi~~~D~~~~~~~~~~~~~~~~p~v~G~E   79 (363)
T 3m6i_A            4 SASKTNIGVFTNPQHD----LWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHE   79 (363)
T ss_dssp             -CCSCCEEEEECTTCC----EEEEECSSCHHHHHHTCSCCTTEEEEEEEEEECCHHHHHHHHHSBSSSCBCCSCEECCCE
T ss_pred             CCcccceeEEEeCCCc----EEEEEecCCccccccCCCcCCCeEEEEEeEEeecHhhHHHHcCCCCCCccCCCCcccCcc
Confidence            4678999999998766    999999999        999999999999999999999998743 22 123679999999


Q ss_pred             eEEEEEEEcCCCCCCCCCCEEEecC---------------------------CCCCcccceEeecccceEEcCCCCChhh
Q psy2960         138 GVGEVVEVGSDVSSLAVGDHVIPDT---------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTE  190 (405)
Q Consensus       138 ~~G~V~~vG~~v~~~~~GdrV~~~~---------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~  190 (405)
                      ++|+|+++|++|++|++||||++.+                           ..+|+|+||++++++.++++|+ +++++
T Consensus        80 ~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~-~s~~~  158 (363)
T 3m6i_A           80 SAGEVIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDFLSTPPVPGLLRRYVNHPAVWCHKIGN-MSYEN  158 (363)
T ss_dssp             EEEEEEEECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEETTSTTSCCSCBSEEEEEGGGEEECTT-CCHHH
T ss_pred             eEEEEEEECCCCCCCCCCCEEEEecccCCCCCHHHHCcCcccCCCccccCCCCCCccceeEEEEehhhEEECCC-CCHHH
Confidence            9999999999999999999999752                           2569999999999999999999 99999


Q ss_pred             hccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCcchHHHHHHHHHcCCcEEeCh
Q psy2960         191 ISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTE  269 (405)
Q Consensus       191 Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~~~~~~~~~~~~lg~~~v~~~  269 (405)
                      ||++. ++.|||+++ +.+++++|++|||+|+ |++|++++|+|+++|++ |+++.++    +++++.++++ ++.++++
T Consensus       159 aa~~~-~~~ta~~~l-~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~----~~~~~~a~~l-~~~~~~~  230 (363)
T 3m6i_A          159 GAMLE-PLSVALAGL-QRAGVRLGDPVLICGA-GPIGLITMLCAKAAGACPLVITDID----EGRLKFAKEI-CPEVVTH  230 (363)
T ss_dssp             HHHHH-HHHHHHHHH-HHHTCCTTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESC----HHHHHHHHHH-CTTCEEE
T ss_pred             HHhhh-HHHHHHHHH-HHcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC----HHHHHHHHHh-chhcccc
Confidence            99884 788999999 5589999999999998 99999999999999998 7777544    3457888888 6544432


Q ss_pred             -------hhHHH-HhhhcCCCCCcEEEECCCch-hHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecc
Q psy2960         270 -------EELRN-ISRDASIPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMT  340 (405)
Q Consensus       270 -------~d~~~-i~~~t~g~g~Dvvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~  340 (405)
                             .++.+ +++.|++.++|+||||+|++ .+..++++++++|+++.+|.... ...++...++.+++++.+++..
T Consensus       231 ~~~~~~~~~~~~~v~~~t~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~-~~~~~~~~~~~~~~~i~g~~~~  309 (363)
T 3m6i_A          231 KVERLSAEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFGGKVFVIGVGKN-EIQIPFMRASVREVDLQFQYRY  309 (363)
T ss_dssp             ECCSCCHHHHHHHHHHHTSSCCCSEEEECSCCHHHHHHHHHHSCTTCEEEECCCCCS-CCCCCHHHHHHHTCEEEECCSC
T ss_pred             cccccchHHHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEEccCCC-CccccHHHHHhcCcEEEEccCC
Confidence                   45666 89999999999999999997 56788999999999999985432 3446666788899999998754


Q ss_pred             hhhhhhccHHHHHHHHHHHHHHHHcCccc--CCcceeeehhhHHHHHHHHhhhcC-CCCceEEEEec
Q psy2960         341 RWQKENKESAERKSMMNELTEMMRTGKLA--APAHKFVTLKNFQEALMNTMSIQG-KSGVKYYIDFR  404 (405)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~--~~~~~~~~~~~~~~A~~~~~~~~~-~~~gKvvl~~~  404 (405)
                                  .+.++++++++++|+++  +.++++|+++++++||+.+.  ++ ...+|+||+++
T Consensus       310 ------------~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~--~~~~~~~Kvvi~~~  362 (363)
T 3m6i_A          310 ------------CNTWPRAIRLVENGLVDLTRLVTHRFPLEDALKAFETAS--DPKTGAIKVQIQSL  362 (363)
T ss_dssp             ------------SSCHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHH--CGGGCCSEEEEECC
T ss_pred             ------------HHHHHHHHHHHHhCCCChHHceeeeeeHHHHHHHHHHHh--ccCCCeEEEEEecC
Confidence                        12367889999999984  55779999999999999999  66 67899999875

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=100.00  E-value=6.8e-53  Score=406.44  Aligned_cols=318  Identities=24%  Similarity=0.353  Sum_probs=271.5

Q ss_pred             cccceeEEEEccCCCC-ccceEe-eeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEc
Q psy2960          69 FSYLANKLVYNQHGTP-LRVVTV-ENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVG  146 (405)
Q Consensus        69 ~~~~~~a~~~~~~g~~-~~~l~~-~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG  146 (405)
                      +|.+||+++++++|.+ .+.+++ ++.|.|+|++|||||||.++|||++|++.+.|.++....+|+++|||++|+|+++|
T Consensus        20 ~~~~MkA~~~~~~g~~~~~~l~~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~i~G~E~~G~V~~vG   99 (362)
T 2c0c_A           20 FQSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALG   99 (362)
T ss_dssp             HCCEEEEEEECSCCSSHHHHEEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHTTTTCTTCCSCEECCSEEEEEEEEEC
T ss_pred             chhhceEEEEeecCCCccceeEEEeecCCCCCCCCeEEEEEEEeccCHHHHHHhcCCCCCCCCCCCCCCceeEEEEEEEC
Confidence            5778999999999863 245889 99999999999999999999999999999999775434679999999999999999


Q ss_pred             CCCC-CCCCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcH
Q psy2960         147 SDVS-SLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSA  225 (405)
Q Consensus       147 ~~v~-~~~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~  225 (405)
                      ++|+ +|++||||++..  .|+|+||++++++.++++|+. + .++|+++++++|||+++.+.+++++|++|||+||+|+
T Consensus       100 ~~V~~~~~vGdrV~~~~--~G~~aey~~v~~~~~~~~P~~-~-~~aaal~~~~~ta~~al~~~~~~~~g~~VlV~Ga~G~  175 (362)
T 2c0c_A          100 LSASARYTVGQAVAYMA--PGSFAEYTVVPASIATPVPSV-K-PEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGG  175 (362)
T ss_dssp             TTGGGTCCTTCEEEEEC--SCCSBSEEEEEGGGCEECSSS-C-HHHHTTTTHHHHHHHHHHHHTCCCTTCEEEETTTTBT
T ss_pred             CCccCCCCCCCEEEEcc--CCcceeEEEEcHHHeEECCCC-c-hHhhcccchHHHHHHHHHHhcCCCCCCEEEEeCCCcH
Confidence            9999 999999999883  599999999999999999996 4 4678889999999999988889999999999999999


Q ss_pred             HHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-HhhhcCCCCCcEEEECCCchhHHHHHHh
Q psy2960         226 CGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-ISRDASIPKPKLALNCVGGNSATNLLRT  302 (405)
Q Consensus       226 vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~  302 (405)
                      +|++++|+|+.+|++|++++++    +++++.++++|+++++++++  +.+ +++.+ +.++|+||||+|+..+..++++
T Consensus       176 iG~~~~q~a~~~Ga~Vi~~~~~----~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~-~~g~D~vid~~g~~~~~~~~~~  250 (362)
T 2c0c_A          176 TGQFAMQLSKKAKCHVIGTCSS----DEKSAFLKSLGCDRPINYKTEPVGTVLKQEY-PEGVDVVYESVGGAMFDLAVDA  250 (362)
T ss_dssp             THHHHHHHHHHTTCEEEEEESS----HHHHHHHHHTTCSEEEETTTSCHHHHHHHHC-TTCEEEEEECSCTHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCEEEEEECC----HHHHHHHHHcCCcEEEecCChhHHHHHHHhc-CCCCCEEEECCCHHHHHHHHHH
Confidence            9999999999999999888755    34577888999999998653  555 66665 5689999999999888889999


Q ss_pred             cccCCEEEEEeccCCCC--c--------ccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCc
Q psy2960         303 LVSKGVMVTYGGMSREP--V--------QIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPA  372 (405)
Q Consensus       303 l~~~G~~v~~g~~~~~~--~--------~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~  372 (405)
                      ++++|+++.+|......  .        .+ ...++.+++++.|++...+..      ...+.++++++++++|++++.+
T Consensus       251 l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~g~~~~~~~~------~~~~~~~~~~~l~~~g~l~~~~  323 (362)
T 2c0c_A          251 LATKGRLIVIGFISGYQTPTGLSPVKAGTL-PAKLLKKSASVQGFFLNHYLS------KYQAAMSHLLEMCVSGDLVCEV  323 (362)
T ss_dssp             EEEEEEEEECCCGGGTTSSSCCCCCCCTTH-HHHHHHHTCEEEECCGGGCGG------GHHHHHHHHHHHHHTTCSCCCE
T ss_pred             HhcCCEEEEEeCCCCcCccccccccccccc-HHHHHhhcceEEEEEhhhhhh------hHHHHHHHHHHHHHCCCeEeee
Confidence            99999999999654321  1        11 135677999999987654321      1256689999999999999864


Q ss_pred             c--------eeeehhhHHHHHHHHhhhcCCCCceEEEEec
Q psy2960         373 H--------KFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       373 ~--------~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                      .        +.|+++++++||+.+.  +++..||+||+++
T Consensus       324 ~~~~~~~~~~~~~l~~~~~A~~~~~--~~~~~gKvvv~~~  361 (362)
T 2c0c_A          324 DLGDLSPEGRFTGLESIFRAVNYMY--MGKNTGKIVVELP  361 (362)
T ss_dssp             ECSTTSTTCSCBSTTHHHHHHHHHH--TTCCSBEEEEECC
T ss_pred             ccccccccccccCHHHHHHHHHHHH--cCCCCceEEEEcC
Confidence            3        5689999999999999  8888999999886

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=8.1e-53  Score=406.68  Aligned_cols=310  Identities=19%  Similarity=0.266  Sum_probs=260.5

Q ss_pred             cccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCC
Q psy2960          69 FSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSD  148 (405)
Q Consensus        69 ~~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~  148 (405)
                      ..++|+++.+.++++.   +++++.|.|+|++|||||||.++|||++|++.+.|.++. ..+|.++|||++|+|+++|++
T Consensus        19 ~~~~~~a~~~~~~~~~---l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~vG~~   94 (369)
T 1uuf_A           19 AGLKIKAVGAYSAKQP---LEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAG-TVYPCVPGHEIVGRVVAVGDQ   94 (369)
T ss_dssp             ----CEEEEBSSTTSC---CEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSC-CCSSBCCCCCEEEEEEEECTT
T ss_pred             cCceEEEEEEcCCCCC---cEEEEecCCCCCCCeEEEEEEEEeecHHHHHHhcCCCCC-CCCCeecccCceEEEEEECCC
Confidence            3567999999877554   899999999999999999999999999999999987653 357999999999999999999


Q ss_pred             CCCCCCCCEEEecC-----------------------------------CCCCcccceEeecccceEEcCCC-CChhhhc
Q psy2960         149 VSSLAVGDHVIPDT-----------------------------------QHLGTWRNYGKFNHDVLMKVPKD-IALTEIS  192 (405)
Q Consensus       149 v~~~~~GdrV~~~~-----------------------------------~~~G~~a~~~~v~~~~~~~iP~~-~s~~~Aa  192 (405)
                      |++|++||||++.+                                   ...|+|+||++++++.++++|++ +++++||
T Consensus        95 V~~~~vGDrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~g~~~~G~~aeyv~v~~~~~~~~P~~~ls~~~aa  174 (369)
T 1uuf_A           95 VEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVA  174 (369)
T ss_dssp             CCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCEECCSCGGGHHHHG
T ss_pred             CCCCCCCCEEEEccCCCCCCCCcccCCCCcccCcchhcccccccccCCCCCCCcccceEEEcchhEEECCCCCCCHHHhh
Confidence            99999999998531                                   13599999999999999999999 9999999


Q ss_pred             cCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhH
Q psy2960         193 GITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEEL  272 (405)
Q Consensus       193 ~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~  272 (405)
                      +++++++|||+++.. +++++|++|||+|+ |++|++++|+|+.+|++|+++++++++    ++.++++|+++++|+++.
T Consensus       175 ~l~~~~~tA~~al~~-~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~~~~~----~~~a~~lGa~~vi~~~~~  248 (369)
T 1uuf_A          175 PLLCAGITTYSPLRH-WQAGPGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAK----REAAKALGADEVVNSRNA  248 (369)
T ss_dssp             GGGTHHHHHHHHHHH-TTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGG----HHHHHHHTCSEEEETTCH
T ss_pred             hhhhhHHHHHHHHHh-cCCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHcCCcEEeccccH
Confidence            999999999999987 69999999999998 899999999999999998888866543    677889999999987653


Q ss_pred             HHHhhhcCCCCCcEEEECCCch-hHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHH
Q psy2960         273 RNISRDASIPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAE  351 (405)
Q Consensus       273 ~~i~~~t~g~g~Dvvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~  351 (405)
                      ..+.+.+  .++|+||||+|++ .+..++++++++|+++.+|........++...++.+++++.|++...          
T Consensus       249 ~~~~~~~--~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~----------  316 (369)
T 1uuf_A          249 DEMAAHL--KSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGG----------  316 (369)
T ss_dssp             HHHHTTT--TCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC-------CHHHHHTTTCEEEECCSCC----------
T ss_pred             HHHHHhh--cCCCEEEECCCCHHHHHHHHHHhccCCEEEEeccCCCCccccCHHHHHhCCcEEEEeecCC----------
Confidence            2233333  5899999999986 57788999999999999986543221455566778999999987643          


Q ss_pred             HHHHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEec
Q psy2960         352 RKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       352 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                       .+.++++++++++|++++.+ ++|+++++++||+.+.  +++..||+||+++
T Consensus       317 -~~~~~~~~~l~~~g~i~~~i-~~~~l~~~~~A~~~~~--~~~~~gKvvi~~~  365 (369)
T 1uuf_A          317 -IPETQEMLDFCAEHGIVADI-EMIRADQINEAYERML--RGDVKYRFVIDNR  365 (369)
T ss_dssp             -HHHHHHHHHHHHHHTCCCCE-EEECGGGHHHHHHHHH--TTCSSSEEEEEGG
T ss_pred             -HHHHHHHHHHHHhCCCCcce-EEEcHHHHHHHHHHHH--cCCCceEEEEecC
Confidence             24478889999999999865 5799999999999999  8888999999875

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=100.00  E-value=2.5e-53  Score=406.88  Aligned_cols=307  Identities=19%  Similarity=0.212  Sum_probs=264.3

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCC--CCCCCCCCccceEEEEEEEcCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPI--KPTLPAVPGFEGVGEVVEVGSDVS  150 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~p~~lG~E~~G~V~~vG~~v~  150 (405)
                      ||++++++++++   +++++.|.|+|++|||||||.++|||++|++.+.|.++.  ...+|.++|||++|+|+++|++|+
T Consensus         1 Mka~~~~~~g~~---l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~   77 (343)
T 2dq4_A            1 MRALAKLAPEEG---LTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVR   77 (343)
T ss_dssp             CEEEEECSSSSS---CEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTCHHHHHHCCSSEECCCEEEEEEEEECTTCC
T ss_pred             CeEEEEeCCCCc---EEEEeccCCCCCCCEEEEEEEEEeechhhHHHHcCCCCccccCCCCCcCCccceEEEEEECCCCC
Confidence            899999999875   889999999999999999999999999999999986541  135789999999999999999999


Q ss_pred             CCCCCCEEEecC--------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHH
Q psy2960         151 SLAVGDHVIPDT--------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRM  204 (405)
Q Consensus       151 ~~~~GdrV~~~~--------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~a  204 (405)
                      +|++||||++.+                          ...|+|+||++++++.++++|+++++++||++ .++.|||++
T Consensus        78 ~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~-~~~~ta~~~  156 (343)
T 2dq4_A           78 RPQVGDHVSLESHIVCHACPACRTGNYHVCLNTQILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAIL-EPFGNAVHT  156 (343)
T ss_dssp             SSCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEEECTTSCHHHHTTH-HHHHHHHHH
T ss_pred             cCCCCCEEEECCCCCCCCChhhhCcCcccCCCcceecCCCCCcceeEEEEchHHeEECCCCCCHHHHHhh-hHHHHHHHH
Confidence            999999999852                          23599999999999999999999999999988 477899999


Q ss_pred             HHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHcCCcEEeChh--hHHH-HhhhcC
Q psy2960         205 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-ISRDAS  280 (405)
Q Consensus       205 l~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~--d~~~-i~~~t~  280 (405)
                      +.+.+++ +|++|||+|+ |++|++++|+|+.+|+ +|+++++++    ++++.++++ +++++|++  ++.+ +++.+ 
T Consensus       157 l~~~~~~-~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~----~~~~~~~~l-a~~v~~~~~~~~~~~~~~~~-  228 (343)
T 2dq4_A          157 VYAGSGV-SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNP----YRLAFARPY-ADRLVNPLEEDLLEVVRRVT-  228 (343)
T ss_dssp             HHSTTCC-TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCH----HHHGGGTTT-CSEEECTTTSCHHHHHHHHH-
T ss_pred             HHHhCCC-CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCH----HHHHHHHHh-HHhccCcCccCHHHHHHHhc-
Confidence            9756899 9999999999 9999999999999999 899987553    456778889 99999875  4556 88888 


Q ss_pred             CCCCcEEEECCCc-hhHHHHHHhcccCCEEEEEeccCCCCcccCc-ccccccCeEEEEEecchhhhhhccHHHHHHHHHH
Q psy2960         281 IPKPKLALNCVGG-NSATNLLRTLVSKGVMVTYGGMSREPVQIPT-SAFIFKDITLRGHWMTRWQKENKESAERKSMMNE  358 (405)
Q Consensus       281 g~g~Dvvld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~-~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~  358 (405)
                      +.++|+||||+|+ +.+..++++++++|+++.+|... .+..++. ..++.+++++.|++....          .+.+++
T Consensus       229 ~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~-~~~~~~~~~~~~~~~~~i~g~~~~~~----------~~~~~~  297 (343)
T 2dq4_A          229 GSGVEVLLEFSGNEAAIHQGLMALIPGGEARILGIPS-DPIRFDLAGELVMRGITAFGIAGRRL----------WQTWMQ  297 (343)
T ss_dssp             SSCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCS-SCEEECHHHHTGGGTCEEEECCSCCT----------THHHHH
T ss_pred             CCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCC-CCceeCcHHHHHhCceEEEEeecCCC----------HHHHHH
Confidence            7899999999998 56678899999999999998643 3345666 667889999999865410          345788


Q ss_pred             HHHHHHcCcc--cCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEecC
Q psy2960         359 LTEMMRTGKL--AAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFRQ  405 (405)
Q Consensus       359 ~~~~~~~g~l--~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~~~  405 (405)
                      +++++++|++  ++.++++|+++++++||+.+.  +++. ||+||++++
T Consensus       298 ~~~l~~~g~~~~~~~i~~~~~l~~~~~A~~~~~--~~~~-gKvv~~~~a  343 (343)
T 2dq4_A          298 GTALVYSGRVDLSPLLTHRLPLSRYREAFGLLA--SGQA-VKVILDPKA  343 (343)
T ss_dssp             HHHHHHHTSSCCGGGEEEEEEGGGHHHHHHHHH--HSSC-SEEEEETTC
T ss_pred             HHHHHHcCCCChHHheeEEecHHHHHHHHHHHh--cCCc-eEEEEeeCC
Confidence            9999999995  566789999999999999998  7777 999999864

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=100.00  E-value=1.3e-52  Score=402.56  Aligned_cols=308  Identities=21%  Similarity=0.280  Sum_probs=267.4

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCC-------CCCCCCCCccceEEEEEEE
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPI-------KPTLPAVPGFEGVGEVVEV  145 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-------~~~~p~~lG~E~~G~V~~v  145 (405)
                      ||++++++++.+   +++++.|.|+|+++||||||.++|||++|++++.|.++.       ...+|.++|||++|+|+++
T Consensus         1 Mka~~~~~~g~~---l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~~p~i~G~e~~G~V~~v   77 (347)
T 1jvb_A            1 MRAVRLVEIGKP---LSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEV   77 (347)
T ss_dssp             CEEEEECSTTSC---CEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEE
T ss_pred             CeEEEEecCCCC---eEEEEeeCCCCCCCeEEEEEEEEEecHHHHHHhcCCCcccccccccCCCCCccccccceEEEEEE
Confidence            899999998865   889999999999999999999999999999999987652       2367999999999999999


Q ss_pred             cCCCCCCCCCCEEEecC--------------------------CCCCcccceEeecc-cceEEcCCCCChhhhccCCCcH
Q psy2960         146 GSDVSSLAVGDHVIPDT--------------------------QHLGTWRNYGKFNH-DVLMKVPKDIALTEISGITSNP  198 (405)
Q Consensus       146 G~~v~~~~~GdrV~~~~--------------------------~~~G~~a~~~~v~~-~~~~~iP~~~s~~~Aa~~~~~~  198 (405)
                      |++|++|++||||++.+                          ...|+|+||+++++ +.++++ +++++++||++++++
T Consensus        78 G~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~G~~~~G~~aey~~v~~~~~~~~i-~~~~~~~aa~l~~~~  156 (347)
T 1jvb_A           78 GDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKL-RRLNAVEAAPLTCSG  156 (347)
T ss_dssp             CTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEEEC-SSSCHHHHGGGGTHH
T ss_pred             CCCCCCCCCCCEEEeCCCCCCCCChhhhCcCcccCcccccccccCCCcceeEEEecCccceEEe-CCCCHHHcccchhhH
Confidence            99999999999998653                          13599999999999 999999 999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-
Q psy2960         199 CTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-  274 (405)
Q Consensus       199 ~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-  274 (405)
                      +|||+++.. +++++|++|||+|++|++|++++|+|+.. |++|+++.+++    ++++.++++|+++++|+.+  +.+ 
T Consensus       157 ~ta~~~l~~-~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~  231 (347)
T 1jvb_A          157 ITTYRAVRK-ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE----EAVEAAKRAGADYVINASMQDPLAE  231 (347)
T ss_dssp             HHHHHHHHH-TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH----HHHHHHHHHTCSEEEETTTSCHHHH
T ss_pred             HHHHHHHHh-cCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCH----HHHHHHHHhCCCEEecCCCccHHHH
Confidence            999999976 89999999999999889999999999999 99988887553    4467788899999988654  444 


Q ss_pred             HhhhcCCCCCcEEEECCCch-hHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHH
Q psy2960         275 ISRDASIPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERK  353 (405)
Q Consensus       275 i~~~t~g~g~Dvvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~  353 (405)
                      +.+.+...++|++||++|++ .+..++++++++|+++.+|.....+ .++...++.+++++.|++...           .
T Consensus       232 ~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~-~~~~~~~~~~~~~i~g~~~~~-----------~  299 (347)
T 1jvb_A          232 IRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADL-HYHAPLITLSEIQFVGSLVGN-----------Q  299 (347)
T ss_dssp             HHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCCCC-CCCHHHHHHHTCEEEECCSCC-----------H
T ss_pred             HHHHhcCCCceEEEECCCCHHHHHHHHHHHhcCCEEEEECCCCCCC-CCCHHHHHhCceEEEEEeccC-----------H
Confidence            66776524899999999987 5667899999999999999654233 566666778999999987543           3


Q ss_pred             HHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         354 SMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       354 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      +.++++++++++|++++.++++|+++++++||+.+.  +++..||+||++
T Consensus       300 ~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~--~~~~~gKvvl~~  347 (347)
T 1jvb_A          300 SDFLGIMRLAEAGKVKPMITKTMKLEEANEAIDNLE--NFKAIGRQVLIP  347 (347)
T ss_dssp             HHHHHHHHHHHTTSSCCCCEEEEEGGGHHHHHHHHH--TTCCCSEEEEEC
T ss_pred             HHHHHHHHHHHcCCCCceEEEEEcHHHHHHHHHHHH--CCCCcceEEecC
Confidence            457889999999999998889999999999999999  888899999975

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=100.00  E-value=1.2e-52  Score=404.03  Aligned_cols=307  Identities=21%  Similarity=0.261  Sum_probs=260.9

Q ss_pred             ccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhccc-CC-CCCCCCCCCccceEEEEEEEcC
Q psy2960          70 SYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGV-YP-IKPTLPAVPGFEGVGEVVEVGS  147 (405)
Q Consensus        70 ~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~-~~-~~~~~p~~lG~E~~G~V~~vG~  147 (405)
                      +++||++++++++.    +++++.|.|+|+++||||||.++|||++|++.+.|. .+ ....+|.++|||++|+|+++|+
T Consensus         5 ~~~mka~~~~~~~~----l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~   80 (356)
T 1pl8_A            5 KPNNLSLVVHGPGD----LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGS   80 (356)
T ss_dssp             CCCCEEEEEEETTE----EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECT
T ss_pred             ccCceEEEEecCCc----EEEEEccCCCCCCCeEEEEEEEeeeCHHHHHHHcCCCCCCccCCCCcccccceEEEEEEECC
Confidence            46799999999754    889999999999999999999999999999998853 21 1125689999999999999999


Q ss_pred             CCCCCCCCCEEEecC---------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHH
Q psy2960         148 DVSSLAVGDHVIPDT---------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCT  200 (405)
Q Consensus       148 ~v~~~~~GdrV~~~~---------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~t  200 (405)
                      +|++|++||||++.+                           ...|+|+||++++++.++++|+++++++||++ .++.|
T Consensus        81 ~V~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~~-~~~~t  159 (356)
T 1pl8_A           81 SVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVTFEEGALI-EPLSV  159 (356)
T ss_dssp             TCCSCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTSCHHHHHHH-HHHHH
T ss_pred             CCCCCCCCCEEEEeccCCCCCChHHHCcCcccCCCccccCcCCCCCccccEEEeehHHEEECcCCCCHHHHHhh-chHHH
Confidence            999999999999752                           13699999999999999999999999999976 47889


Q ss_pred             HHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHcCCcEEeChh-----hHHH
Q psy2960         201 AYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEE-----ELRN  274 (405)
Q Consensus       201 a~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~-----d~~~  274 (405)
                      ||+++ +.+++++|++|||+|+ |++|++++|+|+++|+ +|+++.++    +++++.++++|++++++++     ++.+
T Consensus       160 a~~al-~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~----~~~~~~a~~lGa~~vi~~~~~~~~~~~~  233 (356)
T 1pl8_A          160 GIHAC-RRGGVTLGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLS----ATRLSKAKEIGADLVLQISKESPQEIAR  233 (356)
T ss_dssp             HHHHH-HHHTCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESC----HHHHHHHHHTTCSEEEECSSCCHHHHHH
T ss_pred             HHHHH-HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC----HHHHHHHHHhCCCEEEcCcccccchHHH
Confidence            99999 5589999999999997 9999999999999999 77777644    3457889999999999865     3444


Q ss_pred             -HhhhcCCCCCcEEEECCCch-hHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHH
Q psy2960         275 -ISRDASIPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAER  352 (405)
Q Consensus       275 -i~~~t~g~g~Dvvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~  352 (405)
                       +++.++ .++|+||||+|++ .+..++++++++|+++.+|.. ..+..++...++.+++++.|++...           
T Consensus       234 ~i~~~~~-~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~-~~~~~~~~~~~~~~~~~i~g~~~~~-----------  300 (356)
T 1pl8_A          234 KVEGQLG-CKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLG-SEMTTVPLLHAAIREVDIKGVFRYC-----------  300 (356)
T ss_dssp             HHHHHHT-SCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCC-CSCCCCCHHHHHHTTCEEEECCSCS-----------
T ss_pred             HHHHHhC-CCCCEEEECCCChHHHHHHHHHhcCCCEEEEEecC-CCCCccCHHHHHhcceEEEEecccH-----------
Confidence             777776 7899999999986 457789999999999999853 2334566667788999999976431           


Q ss_pred             HHHHHHHHHHHHcCccc--CCcceeeehhhHHHHHHHHhhhcCCCCceEEEEec
Q psy2960         353 KSMMNELTEMMRTGKLA--APAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       353 ~~~~~~~~~~~~~g~l~--~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                       +.++++++++++|+++  +.++++|+++++++||+.+.  ++ ..||+||+++
T Consensus       301 -~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~--~~-~~gKvvi~~~  350 (356)
T 1pl8_A          301 -NTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFETFK--KG-LGLKIMLKCD  350 (356)
T ss_dssp             -SCHHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHH--TT-CCSEEEEECC
T ss_pred             -HHHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHh--CC-CceEEEEeCC
Confidence             2377889999999975  45779999999999999998  77 8899999985

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=100.00  E-value=5.5e-52  Score=400.69  Aligned_cols=308  Identities=21%  Similarity=0.289  Sum_probs=261.4

Q ss_pred             ccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCC
Q psy2960          70 SYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDV  149 (405)
Q Consensus        70 ~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v  149 (405)
                      ||+|+++...+.++   .+++.+.|.|+|++|||||||.++|||++|++.+.|.++. ..+|.++|||++|+|+++|++|
T Consensus        14 ~mk~~~~~~~~~~~---~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~P~v~GhE~~G~V~~vG~~V   89 (366)
T 1yqd_A           14 PVKAFGWAARDQSG---HLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGF-SMYPLVPGHEIVGEVTEVGSKV   89 (366)
T ss_dssp             SEEEEEEEECSTTC---CEEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHHTSSSC-CCSSBCCCCCEEEEEEEECTTC
T ss_pred             CeeEEEEEEcCCCC---CcEEEEccCCCCCCCeEEEEEEEEeechhhHHHHcCCCCC-CCCCEecccceEEEEEEECCCC
Confidence            45566666554433   3889999999999999999999999999999999987653 3679999999999999999999


Q ss_pred             CCCCCCCEEEecC----------------------------------CCCCcccceEeecccceEEcCCCCChhhhccCC
Q psy2960         150 SSLAVGDHVIPDT----------------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGIT  195 (405)
Q Consensus       150 ~~~~~GdrV~~~~----------------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~  195 (405)
                      ++|++||||++.+                                  ...|+|+||++++++.++++|+++++++||+++
T Consensus        90 ~~~~vGDrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~~P~~ls~~~aa~l~  169 (366)
T 1yqd_A           90 KKVNVGDKVGVGCLVGACHSCESCANDLENYCPKMILTYASIYHDGTITYGGYSNHMVANERYIIRFPDNMPLDGGAPLL  169 (366)
T ss_dssp             CSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEESSSSBCTTSCBCCCSSBSEEEEEGGGCEECCTTSCTTTTGGGG
T ss_pred             CcCCCCCEEEEcCCcCCCCCChhhhCcCcccCCcccccccccccCCCcCCCccccEEEEchhhEEECCCCCCHHHhhhhh
Confidence            9999999998531                                  146999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHhhcCCC-CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHH-HcCCcEEeChhhHH
Q psy2960         196 SNPCTAYRMLKDYNSLS-PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGADYVFTEEELR  273 (405)
Q Consensus       196 ~~~~ta~~al~~~~~~~-~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~-~lg~~~v~~~~d~~  273 (405)
                      +++.|||+++.. .+++ +|++|||+|+ |++|++++|+|+.+|++|+++++++++    ++.++ ++|+++++|+++.+
T Consensus       170 ~~~~ta~~al~~-~~~~~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~----~~~~~~~lGa~~v~~~~~~~  243 (366)
T 1yqd_A          170 CAGITVYSPLKY-FGLDEPGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSK----KEEALKNFGADSFLVSRDQE  243 (366)
T ss_dssp             THHHHHHHHHHH-TTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGG----HHHHHHTSCCSEEEETTCHH
T ss_pred             hhHHHHHHHHHh-cCcCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHH----HHHHHHhcCCceEEeccCHH
Confidence            999999999976 6788 9999999997 999999999999999999988866543    45555 89999999887643


Q ss_pred             HHhhhcCCCCCcEEEECCCch-hHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHH
Q psy2960         274 NISRDASIPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAER  352 (405)
Q Consensus       274 ~i~~~t~g~g~Dvvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~  352 (405)
                      .+.+.+  .++|+||||+|+. .+..++++++++|+++.+|.... ...++...++.+++++.|++...           
T Consensus       244 ~~~~~~--~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~~-----------  309 (366)
T 1yqd_A          244 QMQAAA--GTLDGIIDTVSAVHPLLPLFGLLKSHGKLILVGAPEK-PLELPAFSLIAGRKIVAGSGIGG-----------  309 (366)
T ss_dssp             HHHHTT--TCEEEEEECCSSCCCSHHHHHHEEEEEEEEECCCCSS-CEEECHHHHHTTTCEEEECCSCC-----------
T ss_pred             HHHHhh--CCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEccCCC-CCCcCHHHHHhCCcEEEEecCCC-----------
Confidence            366665  3799999999986 56788999999999999986443 33456666788999999987643           


Q ss_pred             HHHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEec
Q psy2960         353 KSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       353 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                      .+.++++++++++|++++.+ ++|+++++++||+.+.  +++..||+||+++
T Consensus       310 ~~~~~~~~~l~~~g~l~~~~-~~~~l~~~~~A~~~~~--~~~~~gKvvl~~~  358 (366)
T 1yqd_A          310 MKETQEMIDFAAKHNITADI-EVISTDYLNTAMERLA--KNDVRYRFVIDVG  358 (366)
T ss_dssp             HHHHHHHHHHHHHTTCCCCE-EEECGGGHHHHHHHHH--TTCCSSEEEECHH
T ss_pred             HHHHHHHHHHHHcCCCCCce-EEEcHHHHHHHHHHHH--cCCcceEEEEEcc
Confidence            23477889999999999865 7999999999999999  8888999999864

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=100.00  E-value=1.3e-51  Score=393.87  Aligned_cols=312  Identities=21%  Similarity=0.251  Sum_probs=267.3

Q ss_pred             cceeEEEEcc--CCCC-ccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccc----eEEEEE
Q psy2960          71 YLANKLVYNQ--HGTP-LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFE----GVGEVV  143 (405)
Q Consensus        71 ~~~~a~~~~~--~g~~-~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E----~~G~V~  143 (405)
                      ++||+|++++  +|.+ .+.+++++.|.|+|++|||||||.++|||++|++.+.+....  .+|.++|||    ++|+|+
T Consensus         6 ~~mka~v~~~~~~g~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~d~~~~~~~~~~--~~p~~~G~e~g~~~~G~V~   83 (336)
T 4b7c_A            6 QINRQYQLAQRPSGLPGRDTFSFVETPLGEPAEGQILVKNEYLSLDPAMRGWMNDARSY--IPPVGIGEVMRALGVGKVL   83 (336)
T ss_dssp             CEEEEEEECSCCSSSCCTTSEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHHSCSCCS--SCCCCTTSBCCCEEEEEEE
T ss_pred             ccccEEEEEecCCCCCCCCceEEEeccCCCCCCCEEEEEEEEEEeCHHHHhhhhccccc--CCCCCCCcccCCceEEEEE
Confidence            5799999986  2322 256999999999999999999999999999999888775332  457777777    899999


Q ss_pred             EEcCCCCCCCCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhh--ccCCCcHHHHHHHHHhhcCCCCCCEEEEeC
Q psy2960         144 EVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEI--SGITSNPCTAYRMLKDYNSLSPGDVVIQNG  221 (405)
Q Consensus       144 ~vG~~v~~~~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~A--a~~~~~~~ta~~al~~~~~~~~g~~VLI~g  221 (405)
                      +  ++|++|++||||++.    |+|+||++++++.++++|+++++.++  |+++++++|||+++.+.+++++|++|||+|
T Consensus        84 ~--~~v~~~~vGdrV~~~----G~~aey~~v~~~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~~g~~vlI~G  157 (336)
T 4b7c_A           84 V--SKHPGFQAGDYVNGA----LGVQDYFIGEPKGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISG  157 (336)
T ss_dssp             E--ECSTTCCTTCEEEEE----CCSBSEEEECCTTCEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCCTTCEEEESS
T ss_pred             e--cCCCCCCCCCEEecc----CCceEEEEechHHeEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCCCCCCEEEEEC
Confidence            9  458999999999987    89999999999999999999988887  889999999999998889999999999999


Q ss_pred             CCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHH-HHcCCcEEeChhh--HHH-HhhhcCCCCCcEEEECCCchhHH
Q psy2960         222 ANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVFTEEE--LRN-ISRDASIPKPKLALNCVGGNSAT  297 (405)
Q Consensus       222 a~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~-~~lg~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~~~  297 (405)
                      ++|++|++++|+|+..|++|+++++++    ++++.+ +++|+++++|+++  +.+ +.+.+ ++++|++|||+|++.+.
T Consensus       158 a~g~iG~~~~~~a~~~Ga~Vi~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~vi~~~g~~~~~  232 (336)
T 4b7c_A          158 AAGAVGSVAGQIARLKGCRVVGIAGGA----EKCRFLVEELGFDGAIDYKNEDLAAGLKREC-PKGIDVFFDNVGGEILD  232 (336)
T ss_dssp             TTSHHHHHHHHHHHHTTCEEEEEESSH----HHHHHHHHTTCCSEEEETTTSCHHHHHHHHC-TTCEEEEEESSCHHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEEeCCH----HHHHHHHHHcCCCEEEECCCHHHHHHHHHhc-CCCceEEEECCCcchHH
Confidence            999999999999999999999887553    346777 8999999998654  555 77777 56899999999998888


Q ss_pred             HHHHhcccCCEEEEEeccCC----C--CcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCC
Q psy2960         298 NLLRTLVSKGVMVTYGGMSR----E--PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAP  371 (405)
Q Consensus       298 ~~~~~l~~~G~~v~~g~~~~----~--~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~  371 (405)
                      .++++++++|+++.+|....    .  ...++...++.+++++.|++...+..      ...+.++++++++++|++++.
T Consensus       233 ~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~------~~~~~~~~~~~l~~~g~l~~~  306 (336)
T 4b7c_A          233 TVLTRIAFKARIVLCGAISQYNNKEAVRGPANYLSLLVNRARMEGMVVMDYAQ------RFPEGLKEMATWLAEGKLQSR  306 (336)
T ss_dssp             HHHTTEEEEEEEEECCCGGGGC------CCTTTTHHHHTTCEEEECCGGGGGG------GHHHHHHHHHHHHHTTSSCCC
T ss_pred             HHHHHHhhCCEEEEEeecccccCCcccccchhHHHHHhCCcEEEEEEhhhhhh------hhHHHHHHHHHHHHCCCcccc
Confidence            89999999999999996542    1  12455566788999999998766532      235678999999999999999


Q ss_pred             cceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         372 AHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       372 ~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      +..+|+++++++||+.+.  +++..||+||++
T Consensus       307 ~~~~~~l~~~~~A~~~~~--~~~~~gKvvi~~  336 (336)
T 4b7c_A          307 EDIVEGLETFPETLLKLF--SGENFGKLVLKV  336 (336)
T ss_dssp             EEEEECGGGHHHHHHHHH--TTCCCSEEEEEC
T ss_pred             eeeecCHHHHHHHHHHHH--cCCCCceEEEeC
Confidence            888899999999999999  899999999985

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=100.00  E-value=3e-52  Score=404.04  Aligned_cols=323  Identities=21%  Similarity=0.303  Sum_probs=258.4

Q ss_pred             eccccccCCcccceeEEEEccCCCCccceEe-eeecCCCC-CCCeEEEEEEEeecChhhhhhhcccCC------------
Q psy2960          60 SLLDTSARGFSYLANKLVYNQHGTPLRVVTV-ENETLNSV-QKHEVVVKMLVAPVNPADINTIQGVYP------------  125 (405)
Q Consensus        60 ~~~~~~~~~~~~~~~a~~~~~~g~~~~~l~~-~~~~~p~~-~~~eVlVkv~a~gi~~~D~~~~~g~~~------------  125 (405)
                      +-.|+....++++||+++++++|.+ ..+++ ++.|.|+| ++|||||||.++|||++|++.+.|..+            
T Consensus         9 ~~~~~~~~~~~~~mka~~~~~~g~~-~~l~~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~~~~~~   87 (375)
T 2vn8_A            9 SGVDLGTENLYFQSMAWVIDKYGKN-EVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHV   87 (375)
T ss_dssp             ---------CCCCEEEEEBSSCCSG-GGCEEEEEECCCCCCSTTEEEEEEEEEEECHHHHHHHTTTTHHHHHHHHCTTCC
T ss_pred             ccccccccccCccceeEEeccCCCc-cceEEeccccCCCCCCCCEEEEEEEEEEcCHHHHHHhccCcccccccccccccc
Confidence            3456667778999999999999876 45888 99999985 999999999999999999999988532            


Q ss_pred             --CCCCCCCCCccceEEEEEEEcCCCCCCCCCCEEEecCC--CCCcccceEeecccceEEcCCCCChhhhccCCCcHHHH
Q psy2960         126 --IKPTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQ--HLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTA  201 (405)
Q Consensus       126 --~~~~~p~~lG~E~~G~V~~vG~~v~~~~~GdrV~~~~~--~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta  201 (405)
                        ....+|.++|||++|+|+++|++|++|++||||++...  ..|+|+||++++++.++++|+++++++||+++++++||
T Consensus        88 ~~~~~~~P~v~G~E~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~G~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA  167 (375)
T 2vn8_A           88 KIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEVWAAVPPWKQGTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTA  167 (375)
T ss_dssp             SCTTTTCSBCCCCEEEEEEEEECTTCCSCCTTCEEEEECCTTSCCSSBSEEEEEGGGEEECCTTSCHHHHTTSHHHHHHH
T ss_pred             ccccccCCcccceeeeEEEEEeCCCCCCCCCCCEEEEecCCCCCccceeEEEEcHHHeeeCCCCCCHHHHhhhHHHHHHH
Confidence              11237999999999999999999999999999998742  36999999999999999999999999999999999999


Q ss_pred             HHHHHhhcC----CCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh--HHH-
Q psy2960         202 YRMLKDYNS----LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE--LRN-  274 (405)
Q Consensus       202 ~~al~~~~~----~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d--~~~-  274 (405)
                      |+++.+.++    +++|++|||+||+|++|++++|+|+.+|++|++++ +.+    +++.++++|+++++|+++  +.+ 
T Consensus       168 ~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~----~~~~~~~lGa~~v~~~~~~~~~~~  242 (375)
T 2vn8_A          168 WSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQD----ASELVRKLGADDVIDYKSGSVEEQ  242 (375)
T ss_dssp             HHHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGG----GHHHHHHTTCSEEEETTSSCHHHH
T ss_pred             HHHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChH----HHHHHHHcCCCEEEECCchHHHHH
Confidence            999987788    99999999999889999999999999999998887 323    367788999999998754  433 


Q ss_pred             HhhhcCCCCCcEEEECCCchhH--HHHHHhcccCCEEEEEeccCCCCcc---cCc------ccccc-------cCeEEEE
Q psy2960         275 ISRDASIPKPKLALNCVGGNSA--TNLLRTLVSKGVMVTYGGMSREPVQ---IPT------SAFIF-------KDITLRG  336 (405)
Q Consensus       275 i~~~t~g~g~Dvvld~~g~~~~--~~~~~~l~~~G~~v~~g~~~~~~~~---~~~------~~~~~-------k~~~~~g  336 (405)
                      +.+   ..++|+||||+|++..  ..++++++++|+++.+|........   ++.      ..++.       ++..+.+
T Consensus       243 ~~~---~~g~D~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  319 (375)
T 2vn8_A          243 LKS---LKPFDFILDNVGGSTETWAPDFLKKWSGATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRW  319 (375)
T ss_dssp             HHT---SCCBSEEEESSCTTHHHHGGGGBCSSSCCEEEESCCSHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             Hhh---cCCCCEEEECCCChhhhhHHHHHhhcCCcEEEEeCCCcccccccccccchhheeehhhccccccccccCcceEE
Confidence            443   3589999999998743  5678999999999999854321100   000      01222       3444433


Q ss_pred             EecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         337 HWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      .+..      +    ..+.++++++++++|++++.++++|+++++++||+.+.  +++..||+||++
T Consensus       320 ~~~~------~----~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~~--~~~~~gKvvi~~  374 (375)
T 2vn8_A          320 AFFM------A----SGPCLDDIAELVDAGKIRPVIEQTFPFSKVPEAFLKVE--RGHARGKTVINV  374 (375)
T ss_dssp             CCCC------C----CHHHHHHHHHHHHTTSCCCCEEEEEEGGGHHHHHHHHH--HCCCSSEEEEEC
T ss_pred             EEeC------C----CHHHHHHHHHHHHCCCcccCcCeEECHHHHHHHHHHHH--cCCCCCeEEEEe
Confidence            2211      1    13557889999999999998999999999999999999  788899999986

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.1e-51  Score=401.40  Aligned_cols=307  Identities=20%  Similarity=0.208  Sum_probs=258.1

Q ss_pred             cceeEEEEccCCCCccceEeeeecCCCCC-CCe------EEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEE
Q psy2960          71 YLANKLVYNQHGTPLRVVTVENETLNSVQ-KHE------VVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVV  143 (405)
Q Consensus        71 ~~~~a~~~~~~g~~~~~l~~~~~~~p~~~-~~e------VlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~  143 (405)
                      ++||++++++++.    +++++.|.|+|+ ++|      |||||.++|||++|++++.|.++.  .+|.++|||++|+|+
T Consensus         1 ~~Mka~~~~~~~~----l~~~~~p~P~~~~~~e~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~p~v~GhE~~G~V~   74 (398)
T 1kol_A            1 SGNRGVVYLGSGK----VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTA--QVGLVLGHEITGEVI   74 (398)
T ss_dssp             -CEEEEEEEETTE----EEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSCC--CTTCBCCCCEEEEEE
T ss_pred             CccEEEEEecCCc----eEEEEecCCCCCCCCcccccceEEEEEEEEeechhhHHHHcCCCCC--CCCcccCcccEEEEE
Confidence            3699999998764    889999999997 898      999999999999999999997643  568999999999999


Q ss_pred             EEcCCCCCCCCCCEEEecC------------------------------------CCCCcccceEeeccc--ceEEcCCC
Q psy2960         144 EVGSDVSSLAVGDHVIPDT------------------------------------QHLGTWRNYGKFNHD--VLMKVPKD  185 (405)
Q Consensus       144 ~vG~~v~~~~~GdrV~~~~------------------------------------~~~G~~a~~~~v~~~--~~~~iP~~  185 (405)
                      ++|++|++|++||||++.+                                    ...|+|+||+++++.  .++++|++
T Consensus        75 ~vG~~v~~~~vGDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~~v~~~~~~~~~~P~~  154 (398)
T 1kol_A           75 EKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDR  154 (398)
T ss_dssp             EECTTCCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHHCEECSCH
T ss_pred             EECCCCCcCCCCCEEEECCcCCCCCChHHhCcCcccCCCcccccccceeeeccCCCCCceeeeEEEecchhCeEEECCCC
Confidence            9999999999999998521                                    124899999999987  89999999


Q ss_pred             CChhh----hccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCcchHHHHHHHHH
Q psy2960         186 IALTE----ISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKS  260 (405)
Q Consensus       186 ~s~~~----Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~~~~~~~~~~~~  260 (405)
                      +++++    ||++++++.|||+++. .+++++|++|||+|+ |++|++++|+|+++|++ |+++.++    +++++.+++
T Consensus       155 ~~~~~~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlV~Ga-G~vG~~aiqlAk~~Ga~~Vi~~~~~----~~~~~~a~~  228 (398)
T 1kol_A          155 DKAMEKIRDLTCLSDILPTGYHGAV-TAGVGPGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLN----PARLAHAKA  228 (398)
T ss_dssp             HHHHHTHHHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESC----HHHHHHHHH
T ss_pred             cchhhhcccccccccHHHHHHHHHH-HcCCCCCCEEEEECC-cHHHHHHHHHHHHCCCCeEEEEcCC----HHHHHHHHH
Confidence            99998    7899999999999997 589999999999996 99999999999999995 6666433    456888999


Q ss_pred             cCCcEEeChh--h-HHH-HhhhcCCCCCcEEEECCCch----------------hHHHHHHhcccCCEEEEEecc-CCC-
Q psy2960         261 LGADYVFTEE--E-LRN-ISRDASIPKPKLALNCVGGN----------------SATNLLRTLVSKGVMVTYGGM-SRE-  318 (405)
Q Consensus       261 lg~~~v~~~~--d-~~~-i~~~t~g~g~Dvvld~~g~~----------------~~~~~~~~l~~~G~~v~~g~~-~~~-  318 (405)
                      +|++ +++++  + +.+ +++.|++.++|+||||+|++                .+..++++++++|+++.+|.. ... 
T Consensus       229 lGa~-~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~  307 (398)
T 1kol_A          229 QGFE-IADLSLDTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDP  307 (398)
T ss_dssp             TTCE-EEETTSSSCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSCCT
T ss_pred             cCCc-EEccCCcchHHHHHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEeccccCCcc
Confidence            9997 66654  2 556 88889888999999999986                467889999999999999854 211 


Q ss_pred             ----------CcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCccc---CCcceeeehhhHHHHH
Q psy2960         319 ----------PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLA---APAHKFVTLKNFQEAL  385 (405)
Q Consensus       319 ----------~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~---~~~~~~~~~~~~~~A~  385 (405)
                                ...++...++.+++++.++...           ..+.++++++++++|+++   +.++++|+++++++||
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-----------~~~~~~~~~~l~~~g~l~~~~~~i~~~~~l~~~~~A~  376 (398)
T 1kol_A          308 GAVDAAAKIGSLSIRFGLGWAKSHSFHTGQTP-----------VMKYNRALMQAIMWDRINIAEVVGVQVISLDDAPRGY  376 (398)
T ss_dssp             TCSSHHHHTTCCCCCHHHHHHTTCEEEESSCC-----------HHHHHHHHHHHHHTTSCCHHHHHTEEEECGGGHHHHH
T ss_pred             cccccccccccccccHHHHhhcccEEEecccC-----------hHHHHHHHHHHHHcCCCCCccceeEEEEcHHHHHHHH
Confidence                      1234444567789999875421           134578889999999998   4578999999999999


Q ss_pred             HHHhhhcCCCCceEEEEec
Q psy2960         386 MNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       386 ~~~~~~~~~~~gKvvl~~~  404 (405)
                      +.+.  +++. ||+||+++
T Consensus       377 ~~~~--~~~~-gKvvi~~~  392 (398)
T 1kol_A          377 GEFD--AGVP-KKFVIDPH  392 (398)
T ss_dssp             HHHH--HTCS-CEEEECTT
T ss_pred             HHHh--CCCc-eEEEEEeC
Confidence            9998  7777 99999875

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=100.00  E-value=5e-51  Score=393.05  Aligned_cols=318  Identities=19%  Similarity=0.275  Sum_probs=267.0

Q ss_pred             CcccceeEEEE-ccC---CCC-ccceEeeeecCCCC-CCCeEEEEEEEeecChhhhhhhcc----cCCCCCCCCCCCccc
Q psy2960          68 GFSYLANKLVY-NQH---GTP-LRVVTVENETLNSV-QKHEVVVKMLVAPVNPADINTIQG----VYPIKPTLPAVPGFE  137 (405)
Q Consensus        68 ~~~~~~~a~~~-~~~---g~~-~~~l~~~~~~~p~~-~~~eVlVkv~a~gi~~~D~~~~~g----~~~~~~~~p~~lG~E  137 (405)
                      .+|++||++++ +.+   |.| .+.+++++.|.|+| ++|||||||.++|||++|++.+.+    .++....+|.++|||
T Consensus         4 ~~~~~mka~v~~~~~~~~g~p~~~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~~~~g~~~~~~~~~p~v~G~E   83 (357)
T 2zb4_A            4 AAAMIVQRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGG   83 (357)
T ss_dssp             --CCEEEEEEECCCCCTTSCCCGGGEEEEEEECCSCCCTTEEEEEEEEEECCTTHHHHTSSSCSSSSSCCCCBTSBCEEE
T ss_pred             cccccceEEEEeccCCCCCCCCcCceEEEeecCCCCCCCCeEEEEEEEEecCHHHHhhccccccccccCCCCCCcccccc
Confidence            46889999999 565   544 25599999999999 999999999999999999988776    333233678999999


Q ss_pred             eEEEEEEEcCCCCCCCCCCEEEecCCCCCcccceEeecccceEEcCCCC-----ChhhhccCCCcHHHHHHHHHhhcCCC
Q psy2960         138 GVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDI-----ALTEISGITSNPCTAYRMLKDYNSLS  212 (405)
Q Consensus       138 ~~G~V~~vG~~v~~~~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~-----s~~~Aa~~~~~~~ta~~al~~~~~~~  212 (405)
                      ++|+|++  ++|++|++||||++.   .|+|+||++++++.++++|+++     +++ +|+++++++|||+++.+.++++
T Consensus        84 ~~G~V~~--~~v~~~~vGdrV~~~---~G~~aey~~v~~~~~~~iP~~~~~~~~~~~-~a~l~~~~~ta~~al~~~~~~~  157 (357)
T 2zb4_A           84 GIGIIEE--SKHTNLTKGDFVTSF---YWPWQTKVILDGNSLEKVDPQLVDGHLSYF-LGAIGMPGLTSLIGIQEKGHIT  157 (357)
T ss_dssp             EEEEEEE--ECSTTCCTTCEEEEE---EEESBSEEEEEGGGCEECCGGGGTTCGGGG-GTTTSHHHHHHHHHHHHHSCCC
T ss_pred             EEEEEEe--cCCCCCCCCCEEEec---CCCcEEEEEEchHHceecCcccccCchhHH-HHhcccHHHHHHHHHHHhcCCC
Confidence            9999999  899999999999987   3899999999999999999999     665 7889999999999998779999


Q ss_pred             CC--CEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHH-cCCcEEeChhh--HHH-HhhhcCCCCCc
Q psy2960         213 PG--DVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKS-LGADYVFTEEE--LRN-ISRDASIPKPK  285 (405)
Q Consensus       213 ~g--~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~-lg~~~v~~~~d--~~~-i~~~t~g~g~D  285 (405)
                      +|  ++|||+|++|++|++++|+|+..|+ +|+++.++.    ++++.+++ +|+++++|+++  +.+ +.+.+.+ ++|
T Consensus       158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~----~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~-~~d  232 (357)
T 2zb4_A          158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTH----EKCILLTSELGFDAAINYKKDNVAEQLRESCPA-GVD  232 (357)
T ss_dssp             TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCH----HHHHHHHHTSCCSEEEETTTSCHHHHHHHHCTT-CEE
T ss_pred             CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCH----HHHHHHHHHcCCceEEecCchHHHHHHHHhcCC-CCC
Confidence            99  9999999999999999999999999 888887553    34566666 99999988653  555 7777766 899


Q ss_pred             EEEECCCchhHHHHHHhcccCCEEEEEeccCCCCcccCc---------ccccccCeEEEEEecchhhhhhccHHHHHHHH
Q psy2960         286 LALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPT---------SAFIFKDITLRGHWMTRWQKENKESAERKSMM  356 (405)
Q Consensus       286 vvld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~---------~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~  356 (405)
                      ++|||+|+..+..++++++++|+++.+|........++.         ..++.+++++.+++...+.      +...+.+
T Consensus       233 ~vi~~~G~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~------~~~~~~~  306 (357)
T 2zb4_A          233 VYFDNVGGNISDTVISQMNENSHIILCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYK------DKFEPGI  306 (357)
T ss_dssp             EEEESCCHHHHHHHHHTEEEEEEEEECCCGGGTTSCCCSSCCCCHHHHHHHHHHTCEEEECCGGGGG------GGHHHHH
T ss_pred             EEEECCCHHHHHHHHHHhccCcEEEEECCccccccCccccccchhhhhhhhhcceeEEEEeehhhhh------HHHHHHH
Confidence            999999998888899999999999999965432222221         3566799999998765432      2235678


Q ss_pred             HHHHHHHHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEec
Q psy2960         357 NELTEMMRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       357 ~~~~~~~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                      +++++++++|++++.+..+|+++++++||+.+.  +++..||+||+++
T Consensus       307 ~~~~~l~~~g~l~~~~~~~~~l~~~~~A~~~~~--~~~~~gKvvi~~~  352 (357)
T 2zb4_A          307 LQLSQWFKEGKLKIKETVINGLENMGAAFQSMM--TGGNIGKQIVCIS  352 (357)
T ss_dssp             HHHHHHHHTTCCCCCEEEEECGGGHHHHHHHHH--TTCCSBEEEEECC
T ss_pred             HHHHHHHHcCCCcCccceecCHHHHHHHHHHHH--cCCCCceEEEEEe
Confidence            999999999999998878899999999999999  7888999999875

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=100.00  E-value=4.2e-52  Score=406.07  Aligned_cols=306  Identities=21%  Similarity=0.227  Sum_probs=260.6

Q ss_pred             ceeEEEEccCCCCccceEeeeecCCCC-CC-----CeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEE
Q psy2960          72 LANKLVYNQHGTPLRVVTVENETLNSV-QK-----HEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEV  145 (405)
Q Consensus        72 ~~~a~~~~~~g~~~~~l~~~~~~~p~~-~~-----~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~v  145 (405)
                      +||++++++++.    +++++.|.|+| ++     +||||||.++|||++|++++.|.++  ..+|.++|||++|+|+++
T Consensus         2 ~MkA~~~~~~~~----l~~~~~p~P~~~~~~~~~~~eVlVkv~a~gic~~D~~~~~G~~~--~~~p~v~GhE~~G~V~~v   75 (398)
T 2dph_A            2 GNKSVVYHGTRD----LRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFI--VPKGHVLGHEITGEVVEK   75 (398)
T ss_dssp             CEEEEEEEETTE----EEEEEECCCCSEETTEECTTCEEEEEEEEECCHHHHHHHTTSSC--CCTTCBCCCCEEEEEEEE
T ss_pred             ccEEEEEEcCCC----EEEEEccCCCCCCCcCCCCCeEEEEEEEEeecHHHHHHhcCCCC--CCCCcccCCceEEEEEEE
Confidence            699999998764    88999999998 68     9999999999999999999999754  357999999999999999


Q ss_pred             cCCCCCCCCCCEEEecC-------------------------------------CCCCcccceEeeccc--ceEEcCCCC
Q psy2960         146 GSDVSSLAVGDHVIPDT-------------------------------------QHLGTWRNYGKFNHD--VLMKVPKDI  186 (405)
Q Consensus       146 G~~v~~~~~GdrV~~~~-------------------------------------~~~G~~a~~~~v~~~--~~~~iP~~~  186 (405)
                      |++|++|++||||++.+                                     ...|+|+||++++++  .++++|+++
T Consensus        76 G~~v~~~~vGDrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~~~~~~G~~aey~~v~~~~~~~~~iP~~~  155 (398)
T 2dph_A           76 GSDVELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDLKGWSGGQAEYVLVPYADYMLLKFGDKE  155 (398)
T ss_dssp             CTTCCSCCTTCEEECCSBCCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTTBSSCCCSSBSEEEESSHHHHCEECSSHH
T ss_pred             CCCCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCccccccccccccccccCCCCceeeeeEEeccccCeEEECCCCC
Confidence            99999999999999631                                     135999999999987  899999999


Q ss_pred             Chhh----hccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHc
Q psy2960         187 ALTE----ISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSL  261 (405)
Q Consensus       187 s~~~----Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~l  261 (405)
                      ++++    ||+++++++|||+++ +.+++++|++|||+|+ |++|++++|+|+++|+ +|+++.++    +++++.++++
T Consensus       156 ~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~----~~~~~~a~~l  229 (398)
T 2dph_A          156 QAMEKIKDLTLISDILPTGFHGC-VSAGVKPGSHVYIAGA-GPVGRCAAAGARLLGAACVIVGDQN----PERLKLLSDA  229 (398)
T ss_dssp             HHHHTHHHHTTTTTHHHHHHHHH-HHTTCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEESC----HHHHHHHHTT
T ss_pred             ChhhhcchhhhhcCHHHHHHHHH-HHcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCC----HHHHHHHHHc
Confidence            9998    899999999999999 5689999999999997 9999999999999999 78887654    3457889999


Q ss_pred             CCcEEeChh--hH-HH-HhhhcCCCCCcEEEECCCch---------------hHHHHHHhcccCCEEEEEeccC------
Q psy2960         262 GADYVFTEE--EL-RN-ISRDASIPKPKLALNCVGGN---------------SATNLLRTLVSKGVMVTYGGMS------  316 (405)
Q Consensus       262 g~~~v~~~~--d~-~~-i~~~t~g~g~Dvvld~~g~~---------------~~~~~~~~l~~~G~~v~~g~~~------  316 (405)
                      |++ ++|++  ++ .+ +++.|++.++|+||||+|++               .+..++++++++|+++.+|...      
T Consensus       230 Ga~-~i~~~~~~~~~~~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~~~~~~~~~  308 (398)
T 2dph_A          230 GFE-TIDLRNSAPLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGIYVGSDPDP  308 (398)
T ss_dssp             TCE-EEETTSSSCHHHHHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSCCCSCCSSC
T ss_pred             CCc-EEcCCCcchHHHHHHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEecccccccccc
Confidence            996 77764  33 55 88888888999999999976               4677899999999999998652      


Q ss_pred             ------CCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCccc--C--CcceeeehhhHHHHHH
Q psy2960         317 ------REPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLA--A--PAHKFVTLKNFQEALM  386 (405)
Q Consensus       317 ------~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~--~--~~~~~~~~~~~~~A~~  386 (405)
                            .....++...++.|++++.+++...           .+.++++++++++|+++  +  .++++|+++++++||+
T Consensus       309 ~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~-----------~~~~~~~~~l~~~g~l~~~~~~~i~~~~~l~~~~~A~~  377 (398)
T 2dph_A          309 VNKDAGSGRLHLDFGKMWTKSIRIMTGMAPV-----------TNYNRHLTEAILWDQMPYLSKVMNIEVITLDQAPDGYA  377 (398)
T ss_dssp             SSHHHHTTEEEEEHHHHHHTTCEEECSSCCG-----------GGTHHHHHHHHHTTCCHHHHHHHCEEEECSTTHHHHHH
T ss_pred             ccccccCCcccccHHHHhhcCCEEEEeccCc-----------HHHHHHHHHHHHcCCCCccchhhEEEEEcHHHHHHHHH
Confidence                  1122344455678999998865332           23478899999999998  6  4789999999999999


Q ss_pred             HHhhhcCCCCceEEEEec
Q psy2960         387 NTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       387 ~~~~~~~~~~gKvvl~~~  404 (405)
                      .+.  +++. ||+||+++
T Consensus       378 ~~~--~~~~-gKvvv~~~  392 (398)
T 2dph_A          378 KFD--KGSP-AKFVIDPH  392 (398)
T ss_dssp             HHH--TTCS-CEEEECTT
T ss_pred             HHh--cCCc-eEEEEecC
Confidence            998  7777 99999875

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=100.00  E-value=5.6e-51  Score=383.79  Aligned_cols=298  Identities=21%  Similarity=0.275  Sum_probs=252.2

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||++++++++.+   ..+++.|.|+|+++||||||.++|||++|++.+.|.++..+.+|.++|||++|+|+         
T Consensus         1 Mka~~~~~~g~~---~~l~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~---------   68 (302)
T 1iz0_A            1 MKAWVLKRLGGP---LELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVVE---------   68 (302)
T ss_dssp             CEEEEECSTTSC---EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEET---------
T ss_pred             CeEEEEcCCCCc---hheEECCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcccceEEEEEE---------
Confidence            799999999876   33558999999999999999999999999999999776544689999999999997         


Q ss_pred             CCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHH
Q psy2960         153 AVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQ  232 (405)
Q Consensus       153 ~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiq  232 (405)
                        ||||++.. .+|+|+||++++++.++++|+++++++||+++++++|||+++.+.+ +++|++|||+|++|++|++++|
T Consensus        69 --GdrV~~~~-~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~  144 (302)
T 1iz0_A           69 --GRRYAALV-PQGGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQ  144 (302)
T ss_dssp             --TEEEEEEC-SSCCSBSEEEEEGGGCEECCTTCCHHHHHTSHHHHHHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHH
T ss_pred             --CcEEEEec-CCcceeeEEEEcHHHcEeCCCCCCHHHHHHhhhHHHHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHH
Confidence              99999984 4699999999999999999999999999999999999999998767 9999999999999999999999


Q ss_pred             HHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh-HHHHhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEE
Q psy2960         233 IARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE-LRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVT  311 (405)
Q Consensus       233 la~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d-~~~i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~  311 (405)
                      +|+.+|++|+++++++++    ++.++++|+++++|+++ .......   .++|+||| +|++....++++++++|+++.
T Consensus       145 ~a~~~Ga~Vi~~~~~~~~----~~~~~~~ga~~~~~~~~~~~~~~~~---~~~d~vid-~g~~~~~~~~~~l~~~G~~v~  216 (302)
T 1iz0_A          145 VARAMGLRVLAAASRPEK----LALPLALGAEEAATYAEVPERAKAW---GGLDLVLE-VRGKEVEESLGLLAHGGRLVY  216 (302)
T ss_dssp             HHHHTTCEEEEEESSGGG----SHHHHHTTCSEEEEGGGHHHHHHHT---TSEEEEEE-CSCTTHHHHHTTEEEEEEEEE
T ss_pred             HHHHCCCEEEEEeCCHHH----HHHHHhcCCCEEEECCcchhHHHHh---cCceEEEE-CCHHHHHHHHHhhccCCEEEE
Confidence            999999999999876544    56778899999998754 2212222   57999999 999888889999999999999


Q ss_pred             EeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHH---HHHcCcccCCcceeeehhhHHHHHHHH
Q psy2960         312 YGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTE---MMRTGKLAAPAHKFVTLKNFQEALMNT  388 (405)
Q Consensus       312 ~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~l~~~~~~~~~~~~~~~A~~~~  388 (405)
                      +|........++...++.+++++.|+++..+.       ...+.++++++   ++++|++++.++++|+++++++||+.+
T Consensus       217 ~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-------~~~~~~~~~~~~~~l~~~g~l~~~i~~~~~l~~~~~A~~~~  289 (302)
T 1iz0_A          217 IGAAEGEVAPIPPLRLMRRNLAVLGFWLTPLL-------REGALVEEALGFLLPRLGRELRPVVGPVFPFAEAEAAFRAL  289 (302)
T ss_dssp             C-------CCCCTTHHHHTTCEEEECCHHHHT-------TCHHHHHHHHHHHGGGBTTTBCCCEEEEEEGGGHHHHHHHT
T ss_pred             EeCCCCCCCCcCHHHHHhCCCeEEEEeccchh-------hhHHHHHHHHhhhHHHHcCCcccccceEEcHHHHHHHHHHH
Confidence            98654433345666677899999998765430       11455777888   999999999899999999999999999


Q ss_pred             hhhcCCCCceEEEEe
Q psy2960         389 MSIQGKSGVKYYIDF  403 (405)
Q Consensus       389 ~~~~~~~~gKvvl~~  403 (405)
                      .  +++..||+|+++
T Consensus       290 ~--~~~~~gKvvv~~  302 (302)
T 1iz0_A          290 L--DRGHTGKVVVRL  302 (302)
T ss_dssp             T--CTTCCBEEEEEC
T ss_pred             H--cCCCCceEEEeC
Confidence            8  888899999974

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=100.00  E-value=4.4e-52  Score=403.12  Aligned_cols=318  Identities=19%  Similarity=0.258  Sum_probs=266.8

Q ss_pred             ccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCC------------------------
Q psy2960          70 SYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYP------------------------  125 (405)
Q Consensus        70 ~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~------------------------  125 (405)
                      +.+||+++.....   ..+++++.|.|+|++|||||||.++|||++|++.+.|.++                        
T Consensus         5 ~~~mka~v~~~~~---~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~g~~~~p~~~~~~p~~~~   81 (379)
T 3iup_A            5 ALQLRSRIKSSGE---LELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAM   81 (379)
T ss_dssp             EEEEEEEECTTSE---EEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTTCEEEEEEEEECSSSEEEEEECCHHHH
T ss_pred             hhhHHHHHhcCCC---CceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhcCCccccccccccccccccccccCccccc
Confidence            5679999886432   2389999999999999999999999999999999988531                        


Q ss_pred             ----CCCCCCCCCccceEEEEEEEcCCC-CCCCCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHH
Q psy2960         126 ----IKPTLPAVPGFEGVGEVVEVGSDV-SSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCT  200 (405)
Q Consensus       126 ----~~~~~p~~lG~E~~G~V~~vG~~v-~~~~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~t  200 (405)
                          ....+|.++|||++|+|+++|++| ++|++||||++.+  .|+|+||++++++.++++|+++++++||++++.++|
T Consensus        82 ~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~vGdrV~~~~--~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~t  159 (379)
T 3iup_A           82 RSMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAIG--GAMYSQYRCIPADQCLVLPEGATPADGASSFVNPLT  159 (379)
T ss_dssp             HHHGGGTTEEEECCSCEEEEEEEECSSHHHHTTTTCEEEECC--SCCSBSEEEEEGGGEEECCTTCCHHHHTTSSHHHHH
T ss_pred             cccccccCCCccceeeeEEEEEEeCCCcccCCCCCCEEEecC--CCcceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHH
Confidence                012568999999999999999999 8999999999984  599999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCCEEEEeC-CCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChh--hHHH-Hh
Q psy2960         201 AYRMLKDYNSLSPGDVVIQNG-ANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-IS  276 (405)
Q Consensus       201 a~~al~~~~~~~~g~~VLI~g-a~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~--d~~~-i~  276 (405)
                      ||+++.. +. ++|++|||+| |+|++|++++|+|+++|++|++++++    +++++.++++|+++++|++  ++.+ ++
T Consensus       160 a~~~~~~-~~-~~g~~vlV~gag~G~vG~~a~q~a~~~Ga~Vi~~~~~----~~~~~~~~~lGa~~~~~~~~~~~~~~v~  233 (379)
T 3iup_A          160 ALGMVET-MR-LEGHSALVHTAAASNLGQMLNQICLKDGIKLVNIVRK----QEQADLLKAQGAVHVCNAASPTFMQDLT  233 (379)
T ss_dssp             HHHHHHH-HH-HTTCSCEEESSTTSHHHHHHHHHHHHHTCCEEEEESS----HHHHHHHHHTTCSCEEETTSTTHHHHHH
T ss_pred             HHHHHHH-hc-cCCCEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECC----HHHHHHHHhCCCcEEEeCCChHHHHHHH
Confidence            9988766 44 8999999996 78999999999999999999999755    3457889999999999875  3566 88


Q ss_pred             hhcCCCCCcEEEECCCchhH-HHHHHhcc-----cC-----------CEEEEEeccCCCCcccCcccccccCeEEEEEec
Q psy2960         277 RDASIPKPKLALNCVGGNSA-TNLLRTLV-----SK-----------GVMVTYGGMSREPVQIPTSAFIFKDITLRGHWM  339 (405)
Q Consensus       277 ~~t~g~g~Dvvld~~g~~~~-~~~~~~l~-----~~-----------G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~  339 (405)
                      +.|++.++|+||||+|++.. ..++++++     ++           |+++.+|.....  ..+...++.+++++.|+++
T Consensus       234 ~~t~~~g~d~v~d~~g~~~~~~~~~~~l~~~~~r~~G~~~~~G~~~~g~iv~~G~~~~~--~~~~~~~~~~~~~i~g~~~  311 (379)
T 3iup_A          234 EALVSTGATIAFDATGGGKLGGQILTCMEAALNKSAREYSRYGSTTHKQVYLYGGLDTS--PTEFNRNFGMAWGMGGWLL  311 (379)
T ss_dssp             HHHHHHCCCEEEESCEEESHHHHHHHHHHHHHHTTCCSCCTTCCCSCEEEEECCCSEEE--EEEECCCSCSCEEEEECCH
T ss_pred             HHhcCCCceEEEECCCchhhHHHHHHhcchhhhccccceeecccccCceEEEecCCCCC--ccccccccccceEEEEEEe
Confidence            88888899999999998655 56677775     44           666666643322  2333456779999999988


Q ss_pred             chhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhH--HHHHHHHhhhcCCCCceEEEEec
Q psy2960         340 TRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNF--QEALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~--~~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                      ..+.... .++...+.++++.+++++ .+++.++++|+++++  ++||+.+.  +++..||+||+++
T Consensus       312 ~~~~~~~-~~~~~~~~~~~~~~~~~~-~l~~~i~~~~~l~~~~~~~A~~~l~--~~~~~gKvVv~~~  374 (379)
T 3iup_A          312 FPFLQKI-GRERANALKQRVVAELKT-TFASHYSKEISLAEVLDLDMIAVYN--KRATGEKYLINPN  374 (379)
T ss_dssp             HHHHHHH-CHHHHHHHHHHHHHTTTT-TTCCCCSEEEEHHHHTCHHHHHHHT--TCCTTCCEEEETT
T ss_pred             eeecccC-CHHHHHHHHHHHHHHHhc-cCCCcceEEecHHHhhhHHHHHHHh--cCCCCceEEEeCC
Confidence            7764332 236667788999999988 588989999999999  99999999  8899999999986

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=100.00  E-value=3.5e-51  Score=400.17  Aligned_cols=295  Identities=18%  Similarity=0.241  Sum_probs=248.9

Q ss_pred             ceEeeeecCCC-CCCCeEEEEEEEeecChhhhhhhccc------CCCCCCCCCCCccceEEEEEEEcCCC------CCCC
Q psy2960          87 VVTVENETLNS-VQKHEVVVKMLVAPVNPADINTIQGV------YPIKPTLPAVPGFEGVGEVVEVGSDV------SSLA  153 (405)
Q Consensus        87 ~l~~~~~~~p~-~~~~eVlVkv~a~gi~~~D~~~~~g~------~~~~~~~p~~lG~E~~G~V~~vG~~v------~~~~  153 (405)
                      .+++++.|.|+ |++|||||||.++|||++|++.+.|.      ++....+|.++|||++|+|+++|++|      ++|+
T Consensus        41 ~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~P~i~G~E~~G~V~~vG~~v~~~~~~~~~~  120 (404)
T 3ip1_A           41 EVRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSGVVVEAGPEAINRRTNKRFE  120 (404)
T ss_dssp             EEEEEEECCCCCCSTTEEEEEEEEEECCHHHHHHHCBCTTSBBSCCSCBCSSEECCCEEEEEEEEECTTCEETTTTEECC
T ss_pred             ceEEEEcCCCCCCCcCEEEEEEeEeeeCHHHHHHhcCCCCccccccccCCCCcccCccceEEEEEECCCccccccCCCCC
Confidence            48899999999 99999999999999999999999864      22224679999999999999999999      8999


Q ss_pred             CCCEEEecC--------------------------CCCCcccceEeecccceEEcCCCCC------hhhhccCCCcHHHH
Q psy2960         154 VGDHVIPDT--------------------------QHLGTWRNYGKFNHDVLMKVPKDIA------LTEISGITSNPCTA  201 (405)
Q Consensus       154 ~GdrV~~~~--------------------------~~~G~~a~~~~v~~~~~~~iP~~~s------~~~Aa~~~~~~~ta  201 (405)
                      +||||++.+                          ...|+|+||++++++.++++|++++      +.++|+++.+++||
T Consensus       121 vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~~~~~~~~~aa~l~~~~~ta  200 (404)
T 3ip1_A          121 IGEPVCAEEMLWCGHCRPCAEGFPNHCENLNELGFNVDGAFAEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVA  200 (404)
T ss_dssp             TTCEEEECSEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGEEECGGGBTTBCTHHHHHHHHTHHHHHHH
T ss_pred             CCCEEEECCccCCCCCHHHHCcCcccCccccccCCCCCCCCcceEEechHHeEeccccccccccccchhHHhhhhHHHHH
Confidence            999999742                          2369999999999999999999886      45689999999999


Q ss_pred             HHHHHhh-cCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHcCCcEEeChh--hHHH-Hh
Q psy2960         202 YRMLKDY-NSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEE--ELRN-IS  276 (405)
Q Consensus       202 ~~al~~~-~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~--d~~~-i~  276 (405)
                      |+++... +++++|++|||+|+ |++|++++|+|+++|+ +|+++.++    +++++.++++|+++++|++  ++.+ ++
T Consensus       201 ~~al~~~~~~~~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~----~~~~~~~~~lGa~~vi~~~~~~~~~~i~  275 (404)
T 3ip1_A          201 YNAVIVRGGGIRPGDNVVILGG-GPIGLAAVAILKHAGASKVILSEPS----EVRRNLAKELGADHVIDPTKENFVEAVL  275 (404)
T ss_dssp             HHHHTTTSCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSC----HHHHHHHHHHTCSEEECTTTSCHHHHHH
T ss_pred             HHHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC----HHHHHHHHHcCCCEEEcCCCCCHHHHHH
Confidence            9999754 48999999999998 9999999999999999 66666533    4568899999999999875  4666 99


Q ss_pred             hhcCCCCCcEEEECCCch--hHHHHHHhc----ccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHH
Q psy2960         277 RDASIPKPKLALNCVGGN--SATNLLRTL----VSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESA  350 (405)
Q Consensus       277 ~~t~g~g~Dvvld~~g~~--~~~~~~~~l----~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~  350 (405)
                      +.|++.++|+||||+|++  ....+++++    +++|+++.+|.... ...++...++.+++++.|++....        
T Consensus       276 ~~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~~~-~~~~~~~~~~~~~~~i~g~~~~~~--------  346 (404)
T 3ip1_A          276 DYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADA-KIPLTGEVFQVRRAQIVGSQGHSG--------  346 (404)
T ss_dssp             HHTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSCCCS-CEEECHHHHHHTTCEEEECCCCCS--------
T ss_pred             HHhCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCCCCC-CCcccHHHHhccceEEEEecCCCc--------
Confidence            999999999999999998  445566777    99999999996543 345677778889999999875321        


Q ss_pred             HHHHHHHHHHHHHHcCccc--CCcceeeehhhHHHHHHHHhhhcCCCCceEEEEec
Q psy2960         351 ERKSMMNELTEMMRTGKLA--APAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       351 ~~~~~~~~~~~~~~~g~l~--~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                        .+.++++++++++| ++  +.++++|+++++++||+.+.      .||+||+++
T Consensus       347 --~~~~~~~~~ll~~g-l~~~~~i~~~~~l~~~~~A~~~~~------~GKvvl~~~  393 (404)
T 3ip1_A          347 --HGTFPRVISLMASG-MDMTKIISKTVSMEEIPEYIKRLQ------TDKSLVKVT  393 (404)
T ss_dssp             --TTHHHHHHHHHHTT-CCGGGGCCEEECGGGHHHHHHHTT------TCTTCSCEE
T ss_pred             --hHHHHHHHHHHHcC-CChhheEEEEeeHHHHHHHHHHHh------CCcEEEecC
Confidence              23477899999999 65  45789999999999999876      467777664

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=100.00  E-value=9e-51  Score=391.14  Aligned_cols=302  Identities=18%  Similarity=0.191  Sum_probs=256.0

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCC---CCCCccceEEEEEEEcCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTL---PAVPGFEGVGEVVEVGSDV  149 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~---p~~lG~E~~G~V~~vG~~v  149 (405)
                      ||++++++++.+   +++++.|.|+|++|||||||.++|||++|++++.|.++. ..+   |.++|||++| |+++|++ 
T Consensus         1 MkA~~~~~~~~~---l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~~~~~p~v~G~E~~G-V~~vG~~-   74 (357)
T 2b5w_A            1 MKAIAVKRGEDR---PVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGG-FPEGEDHLVLGHEAVG-VVVDPND-   74 (357)
T ss_dssp             CEEEEEETTCSS---CEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHSCSTT-SCTTCSEEECCSEEEE-EEEECTT-
T ss_pred             CeEEEEeCCCCc---eEEEECCCCCCCcCEEEEEEeEEeechhcHHHHcCCCCC-CCCCCCCcccCceeEE-EEEECCC-
Confidence            899999998874   889999999999999999999999999999999997654 356   8999999999 9999999 


Q ss_pred             CCCCCCCEEEecC-------------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcH
Q psy2960         150 SSLAVGDHVIPDT-------------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNP  198 (405)
Q Consensus       150 ~~~~~GdrV~~~~-------------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~  198 (405)
                      ++|++||||++.+                               ..+|+|+||++++++.++++|++++ ++ |+++.++
T Consensus        75 ~~~~vGdrV~~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~~~-~~-aal~~~~  152 (357)
T 2b5w_A           75 TELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVGAHGYMSEFFTSPEKYLVRIPRSQA-EL-GFLIEPI  152 (357)
T ss_dssp             SSCCTTCEEEECSEECCTTCCCHHHHTTCGGGCCTTSCEEETTBEECCSCBSEEEEEGGGEEECCGGGS-TT-GGGHHHH
T ss_pred             CCCCCCCEEEECCcCCCCCCCChHHhCcCcccCCCCcccccCccCCCcceeeEEEEchHHeEECCCCcc-hh-hhhhchH
Confidence            9999999999752                               1259999999999999999999999 54 5577899


Q ss_pred             HHHHHHHHhhcCCCCC------CEEEEeCCCcHHHHHH-HHHH-HHcCCc-EEEEecCCcchHHHHHHHHHcCCcEEeCh
Q psy2960         199 CTAYRMLKDYNSLSPG------DVVIQNGANSACGQNV-IQIA-RHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTE  269 (405)
Q Consensus       199 ~ta~~al~~~~~~~~g------~~VLI~ga~G~vG~~a-iqla-~~~G~~-v~~~~~~~~~~~~~~~~~~~lg~~~v~~~  269 (405)
                      +|||+++ +.+++++|      ++|||+|+ |++|+++ +|+| +++|++ |++++++++. +.+++.++++|++++ |+
T Consensus       153 ~ta~~al-~~~~~~~g~~~~~~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~-~~~~~~~~~lGa~~v-~~  228 (357)
T 2b5w_A          153 SITEKAL-EHAYASRSAFDWDPSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRDRP-DPTIDIIEELDATYV-DS  228 (357)
T ss_dssp             HHHHHHH-HHHHHTTTTSCCCCCEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCCSS-CHHHHHHHHTTCEEE-ET
T ss_pred             HHHHHHH-HhcCCCCCcccCCCCEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCccc-HHHHHHHHHcCCccc-CC
Confidence            9999999 45889999      99999999 9999999 9999 999998 8888876540 114678889999999 86


Q ss_pred             hh--HHHHhhhcCCCCCcEEEECCCch-hHHHHHHhcccCCEEEEEeccCCCCcccCcccc----cccCeEEEEEecchh
Q psy2960         270 EE--LRNISRDASIPKPKLALNCVGGN-SATNLLRTLVSKGVMVTYGGMSREPVQIPTSAF----IFKDITLRGHWMTRW  342 (405)
Q Consensus       270 ~d--~~~i~~~t~g~g~Dvvld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~----~~k~~~~~g~~~~~~  342 (405)
                      ++  +.++++. ++ ++|+||||+|++ .+..++++++++|+++.+|.....+..++...+    +.+++++.|++... 
T Consensus       229 ~~~~~~~i~~~-~g-g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~-  305 (357)
T 2b5w_A          229 RQTPVEDVPDV-YE-QMDFIYEATGFPKHAIQSVQALAPNGVGALLGVPSDWAFEVDAGAFHREMVLHNKALVGSVNSH-  305 (357)
T ss_dssp             TTSCGGGHHHH-SC-CEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHTTCEEEECCCCC-
T ss_pred             CccCHHHHHHh-CC-CCCEEEECCCChHHHHHHHHHHhcCCEEEEEeCCCCCCceecHHHHhHHHHhCCeEEEEeccCC-
Confidence            54  3235555 55 999999999986 567889999999999999965433445666666    78999999987543 


Q ss_pred             hhhhccHHHHHHHHHHHHHHHHcC--c-ccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEec
Q psy2960         343 QKENKESAERKSMMNELTEMMRTG--K-LAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~g--~-l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                                .+.++++++++++|  + +++.++++|+++++++||+.+     +..||+||+++
T Consensus       306 ----------~~~~~~~~~l~~~g~~~~~~~~i~~~~~l~~~~~A~~~~-----~~~gKvvi~~~  355 (357)
T 2b5w_A          306 ----------VEHFEAATVTFTKLPKWFLEDLVTGVHPLSEFEAAFDDD-----DTTIKTAIEFS  355 (357)
T ss_dssp             ----------HHHHHHHHHHHHHSCHHHHHHHEEEEEEGGGGGGGGCCS-----TTCCEEEEECC
T ss_pred             ----------HHHHHHHHHHHHhCchhhhhhhcceeecHHHHHHHHHHh-----CCCceEEEEec
Confidence                      34588899999999  8 688788999999999999865     34799999986

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=100.00  E-value=5.6e-48  Score=368.34  Aligned_cols=312  Identities=22%  Similarity=0.295  Sum_probs=258.5

Q ss_pred             cccceeEEEEccC--CCC-ccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEE
Q psy2960          69 FSYLANKLVYNQH--GTP-LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEV  145 (405)
Q Consensus        69 ~~~~~~a~~~~~~--g~~-~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~v  145 (405)
                      .+++||+|++.++  |.+ .+.+++++.|.|+|++|||||||.++|||+.|... .+  +  ..+|.++|||++|+|++.
T Consensus         4 ~~~~mka~~~~~~~~g~~~~~~l~~~e~~~P~~~~~eVlVkv~a~gi~~~~~~~-~~--~--~~~p~~~g~e~~G~Vv~~   78 (333)
T 1v3u_A            4 FMVKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIA-SK--R--LKEGAVMMGQQVARVVES   78 (333)
T ss_dssp             CCCEEEEEEECC-----CCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHH-TT--T--CCTTSBCCCCEEEEEEEE
T ss_pred             ccccccEEEEeecCCCCCCccceEEEeCCCCCCCCCEEEEEEEEeccCHHHccc-cC--c--CCCCcccccceEEEEEec
Confidence            3678999999985  543 25689999999999999999999999999998732 11  2  246889999999999995


Q ss_pred             cCCCCCCCCCCEEEecCCCCCcccceEeecccceEEcCCC----CChhh-hccCCCcHHHHHHHHHhhcCCCCCCEEEEe
Q psy2960         146 GSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKD----IALTE-ISGITSNPCTAYRMLKDYNSLSPGDVVIQN  220 (405)
Q Consensus       146 G~~v~~~~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~----~s~~~-Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~  220 (405)
                        ++++|++||||++.    |+|+||++++.+.++++|++    +++++ +|+++++++|||+++.+.+++++|++|||+
T Consensus        79 --~v~~~~vGdrV~~~----g~~aey~~v~~~~~~~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~~~g~~vlV~  152 (333)
T 1v3u_A           79 --KNSAFPAGSIVLAQ----SGWTTHFISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVS  152 (333)
T ss_dssp             --SCTTSCTTCEEEEC----CCSBSEEEESSTTEEECC--CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCCCSSCEEEEE
T ss_pred             --CCCCCCCCCEEEec----CceEEEEEechHHeEEcCcccccCCCHHHHHHHhCChHHHHHHHHHHhhCCCCCCEEEEe
Confidence              68899999999986    89999999999999999997    88888 589999999999999887899999999999


Q ss_pred             CCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChh---hHHH-HhhhcCCCCCcEEEECCCchhH
Q psy2960         221 GANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE---ELRN-ISRDASIPKPKLALNCVGGNSA  296 (405)
Q Consensus       221 ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~---d~~~-i~~~t~g~g~Dvvld~~g~~~~  296 (405)
                      |++|++|++++|+|+..|++|+++.++.    ++++.++++|+++++|..   ++.+ +.+.++ +++|++|||+|++.+
T Consensus       153 Ga~ggiG~~~~~~~~~~G~~V~~~~~~~----~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~-~~~d~vi~~~g~~~~  227 (333)
T 1v3u_A          153 AAAGAVGSVVGQIAKLKGCKVVGAAGSD----EKIAYLKQIGFDAAFNYKTVNSLEEALKKASP-DGYDCYFDNVGGEFL  227 (333)
T ss_dssp             STTBHHHHHHHHHHHHTTCEEEEEESSH----HHHHHHHHTTCSEEEETTSCSCHHHHHHHHCT-TCEEEEEESSCHHHH
T ss_pred             cCCCcHHHHHHHHHHHCCCEEEEEeCCH----HHHHHHHhcCCcEEEecCCHHHHHHHHHHHhC-CCCeEEEECCChHHH
Confidence            9999999999999999999998887543    346677889999988764   3555 777665 589999999999888


Q ss_pred             HHHHHhcccCCEEEEEeccCCC-----Cc-ccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccC
Q psy2960         297 TNLLRTLVSKGVMVTYGGMSRE-----PV-QIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAA  370 (405)
Q Consensus       297 ~~~~~~l~~~G~~v~~g~~~~~-----~~-~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~  370 (405)
                      ..++++++++|+++.+|.....     .. ..+...++.+++++.|++...+.     +....+.++++++++++|++++
T Consensus       228 ~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~-----~~~~~~~~~~~~~l~~~g~l~~  302 (333)
T 1v3u_A          228 NTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQ-----GDVREKALRDLMKWVLEGKIQY  302 (333)
T ss_dssp             HHHHTTEEEEEEEEECCCCC-------CCBCCCHHHHHHTTCEEEECCGGGCC-----THHHHHHHHHHHHHHHTTSSCC
T ss_pred             HHHHHHHhcCCEEEEEeccccccCCCCCCCCcCHHHHhhcCceEEEEehhhcc-----hHHHHHHHHHHHHHHHCCCccC
Confidence            8899999999999999965431     11 12445677899999998765432     1334677899999999999999


Q ss_pred             CcceeeehhhHHHHHHHHhhhcCCCCceEEEEe
Q psy2960         371 PAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDF  403 (405)
Q Consensus       371 ~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~  403 (405)
                      .+..+++++++++||+.+.  +++..||+||++
T Consensus       303 ~~~~~~~l~~~~~A~~~~~--~~~~~gKvvl~~  333 (333)
T 1v3u_A          303 HEHVTKGFENMPAAFIEML--NGANLGKAVVTA  333 (333)
T ss_dssp             CEEEEECGGGHHHHHHHHH--TTCCSBEEEEEC
T ss_pred             ccccccCHHHHHHHHHHHH--cCCCCceEEEeC
Confidence            8777899999999999999  888899999975

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=100.00  E-value=3.5e-48  Score=371.58  Aligned_cols=317  Identities=19%  Similarity=0.210  Sum_probs=262.0

Q ss_pred             cccceeEEEEccC--CCCcc-ceEee--eecCCC-CCCCeEEEEEEEeecChhhhhhhcccCCCC---CCCCCCCccceE
Q psy2960          69 FSYLANKLVYNQH--GTPLR-VVTVE--NETLNS-VQKHEVVVKMLVAPVNPADINTIQGVYPIK---PTLPAVPGFEGV  139 (405)
Q Consensus        69 ~~~~~~a~~~~~~--g~~~~-~l~~~--~~~~p~-~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~---~~~p~~lG~E~~  139 (405)
                      ||++||++++...  +.|.. .++++  +.|.|. |++|||||||.++|+|+.|. .+.|.+...   ..+|+++|||++
T Consensus         1 m~~~mka~~m~a~~~~~p~~~~l~~~~~~~~~P~~~~~~eVlVkv~a~g~~~~~~-~~~g~~~~~~~~~~~p~v~G~e~~   79 (345)
T 2j3h_A            1 MTATNKQVILKDYVSGFPTESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMR-IRMGKPDPSTAALAQAYTPGQPIQ   79 (345)
T ss_dssp             CEEEEEEEEECSCBSSSCCGGGEEEEEEEEECCSCSSSSCEEEEECEEECCTTHH-HHHBC---------CCCCTTSBCE
T ss_pred             CCccceEEEEecCCCCCCCccceeEEEeecCCCCCCCCCEEEEEEEEecCCHHHH-hhcccCCCCccccCCCcCCCCeee
Confidence            4678999999886  55533 48888  888886 89999999999999998885 455543211   146899999999


Q ss_pred             EEEEE--EcCCCCCCCCCCEEEecCCCCCcccceEeecccc--eEEcCC---CCChhhhccCCCcHHHHHHHHHhhcCCC
Q psy2960         140 GEVVE--VGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDV--LMKVPK---DIALTEISGITSNPCTAYRMLKDYNSLS  212 (405)
Q Consensus       140 G~V~~--vG~~v~~~~~GdrV~~~~~~~G~~a~~~~v~~~~--~~~iP~---~~s~~~Aa~~~~~~~ta~~al~~~~~~~  212 (405)
                      |++++  +|+++++|++||||++.    |+|+||++++...  ++++|+   +++++ +|+++++++|||+++.+.++++
T Consensus        80 G~~~~GvV~~~v~~~~vGdrV~~~----g~~aey~~v~~~~~~~~~ip~~~~~~~~~-aa~l~~~~~ta~~al~~~~~~~  154 (345)
T 2j3h_A           80 GYGVSRIIESGHPDYKKGDLLWGI----VAWEEYSVITPMTHAHFKIQHTDVPLSYY-TGLLGMPGMTAYAGFYEVCSPK  154 (345)
T ss_dssp             EEEEEEEEEECSTTCCTTCEEEEE----EESBSEEEECCCTTTCEEECCCSSCTTGG-GTTTSHHHHHHHHHHHTTSCCC
T ss_pred             cceEEEEEecCCCCCCCCCEEEee----cCceeEEEecccccceeecCCCCCCHHHH-HHhccccHHHHHHHHHHHhCCC
Confidence            99999  99999999999999987    8999999999876  999996   46666 7889999999999998878999


Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHH-HcCCcEEeChh---hHHH-HhhhcCCCCCcEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGADYVFTEE---ELRN-ISRDASIPKPKLA  287 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~-~lg~~~v~~~~---d~~~-i~~~t~g~g~Dvv  287 (405)
                      +|++|||+|++|++|++++|+|+..|++|+++.++.    ++++.++ ++|+++++|+.   ++.+ +.+.++ .++|++
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~----~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~-~~~d~v  229 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSK----EKVDLLKTKFGFDDAFNYKEESDLTAALKRCFP-NGIDIY  229 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH----HHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCT-TCEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH----HHHHHHHHHcCCceEEecCCHHHHHHHHHHHhC-CCCcEE
Confidence            999999999999999999999999999988887553    3467777 79999998864   3455 666664 689999


Q ss_pred             EECCCchhHHHHHHhcccCCEEEEEeccCCC-----CcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHH
Q psy2960         288 LNCVGGNSATNLLRTLVSKGVMVTYGGMSRE-----PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEM  362 (405)
Q Consensus       288 ld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~-----~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (405)
                      |||+|++.+..++++++++|+++.+|.....     ...++...++.+++++.|++...+.      ....+.+++++++
T Consensus       230 i~~~g~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~------~~~~~~~~~~~~l  303 (345)
T 2j3h_A          230 FENVGGKMLDAVLVNMNMHGRIAVCGMISQYNLENQEGVHNLSNIIYKRNRIQGFVVSDFY------DKYSKFLEFVLPH  303 (345)
T ss_dssp             EESSCHHHHHHHHTTEEEEEEEEECCCGGGTTCSSCCCBSCTTHHHHHTCEEEECCGGGGG------GGHHHHHHHHHHH
T ss_pred             EECCCHHHHHHHHHHHhcCCEEEEEccccccccCCccccccHHHHhhhceeeceeeehhhh------hhHHHHHHHHHHH
Confidence            9999998778899999999999999865431     2334555677899999998765432      1235668999999


Q ss_pred             HHcCcccCCcceeeehhhHHHHHHHHhhhcCCCCceEEEEec
Q psy2960         363 MRTGKLAAPAHKFVTLKNFQEALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       363 ~~~g~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                      +++|++++.+.++|+++++++||+.+.  +++..||+||+++
T Consensus       304 ~~~g~i~~~~~~~~~l~~~~~A~~~~~--~~~~~gKvvv~~~  343 (345)
T 2j3h_A          304 IREGKITYVEDVADGLEKAPEALVGLF--HGKNVGKQVVVVA  343 (345)
T ss_dssp             HHTTSSCCCEEEEESGGGSHHHHHHHH--TTCCSSEEEEESS
T ss_pred             HHCCCCcCcccccCCHHHHHHHHHHHH--cCCCceEEEEEeC
Confidence            999999987777899999999999999  8889999999885

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=100.00  E-value=4.2e-49  Score=380.79  Aligned_cols=304  Identities=16%  Similarity=0.204  Sum_probs=251.4

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCC-CeEEEEEEEeecChhhhhhhcc--cCCCCCCC---CCCCccceEEEEEEEc
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQK-HEVVVKMLVAPVNPADINTIQG--VYPIKPTL---PAVPGFEGVGEVVEVG  146 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~-~eVlVkv~a~gi~~~D~~~~~g--~~~~~~~~---p~~lG~E~~G~V~~vG  146 (405)
                      ||++++++++.+   +++++.|.|+|++ +||||||.|+|||++|++.+.|  .++. ..+   |.++|||++|+|++  
T Consensus         1 MkA~~~~~~g~~---l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~-~~~~~~p~v~G~E~~G~V~~--   74 (366)
T 2cdc_A            1 MKAIIVKPPNAG---VQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLST-LPKGKDFLVLGHEAIGVVEE--   74 (366)
T ss_dssp             CEEEEECTTSCC---CEEEECCGGGSCCCSSEEEEEEEEEECHHHHHHHTTCC--------CCSCEECCSEEEEEECS--
T ss_pred             CeEEEEeCCCCc---eEEEECcCCCCCCCCEEEEEEEEEeeccccHHHHcCCCCCCC-CCcCCCCCcCCcceEEEEEe--
Confidence            899999998874   8899999999999 9999999999999999999998  6542 246   89999999999999  


Q ss_pred             CCCCCCCCCCEEEecC----------------------------C-CCCcccceEeecccceEEcCCCCChhhhccCCCc
Q psy2960         147 SDVSSLAVGDHVIPDT----------------------------Q-HLGTWRNYGKFNHDVLMKVPKDIALTEISGITSN  197 (405)
Q Consensus       147 ~~v~~~~~GdrV~~~~----------------------------~-~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~  197 (405)
                      ++ ++|++||||++.+                            . ..|+|+||++++++.++++|++++ ++|| ++.+
T Consensus        75 ~~-~~~~~GDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~g~~~~~G~~aey~~v~~~~~~~iP~~l~-~~Aa-l~~~  151 (366)
T 2cdc_A           75 SY-HGFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIHKMDGFMREWWYDDPKYLVKIPKSIE-DIGI-LAQP  151 (366)
T ss_dssp             CC-SSCCTTCEEEECSEECCSSSHHHHTTCGGGCSSSCCEEETTBEECCSCBSEEEECGGGEEEECGGGT-TTGG-GHHH
T ss_pred             CC-CCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCcccCCccCCCCceeEEEEechHHeEECcCCcc-hhhh-hcCc
Confidence            77 9999999999752                            1 359999999999999999999999 8765 6779


Q ss_pred             HHHHHHHHH--h--hcCCC--C-------CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc
Q psy2960         198 PCTAYRMLK--D--YNSLS--P-------GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD  264 (405)
Q Consensus       198 ~~ta~~al~--~--~~~~~--~-------g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~  264 (405)
                      +.|||+++.  +  .++++  +       |++|||+|+ |++|++++|+|+.+|++|+++.++++ .+++++.++++|++
T Consensus       152 ~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~-~~~~~~~~~~~ga~  229 (366)
T 2cdc_A          152 LADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREP-TEVEQTVIEETKTN  229 (366)
T ss_dssp             HHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCC-CHHHHHHHHHHTCE
T ss_pred             HHHHHHHHHhhhhcccCccccccccccCCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCcc-chHHHHHHHHhCCc
Confidence            999999998  4  68899  8       999999999 99999999999999999998886641 11346788899999


Q ss_pred             EEeChhh-HHH-HhhhcCCCCCcEEEECCCch-hH-HHHHHhcccCCEEEEEeccCCCCcccCccc---ccccCeEEEEE
Q psy2960         265 YVFTEEE-LRN-ISRDASIPKPKLALNCVGGN-SA-TNLLRTLVSKGVMVTYGGMSREPVQIPTSA---FIFKDITLRGH  337 (405)
Q Consensus       265 ~v~~~~d-~~~-i~~~t~g~g~Dvvld~~g~~-~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~---~~~k~~~~~g~  337 (405)
                      ++ | ++ +.+ +.+ ++ .++|+||||+|+. .+ ..++++++++|+++.+|........++...   ++.+++++.|+
T Consensus       230 ~v-~-~~~~~~~~~~-~~-~~~d~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~  305 (366)
T 2cdc_A          230 YY-N-SSNGYDKLKD-SV-GKFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTSGSVPLDYKTLQEIVHTNKTIIGL  305 (366)
T ss_dssp             EE-E-CTTCSHHHHH-HH-CCEEEEEECCCCCTHHHHHHGGGEEEEEEEEECSCCCSCEEEEEHHHHHHHHHTTCEEEEC
T ss_pred             ee-c-hHHHHHHHHH-hC-CCCCEEEECCCChHHHHHHHHHHHhcCCEEEEEecCCCCccccChhhhHHHHhcCcEEEEe
Confidence            88 7 43 333 666 55 7899999999986 55 778999999999999986544324455555   77899999997


Q ss_pred             ecchhhhhhccHHHHHHHHHHHHHHHHcCc------ccCCcceeeehhhHHHHHHHH-hhhcCCCCceEEEEec
Q psy2960         338 WMTRWQKENKESAERKSMMNELTEMMRTGK------LAAPAHKFVTLKNFQEALMNT-MSIQGKSGVKYYIDFR  404 (405)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~------l~~~~~~~~~~~~~~~A~~~~-~~~~~~~~gKvvl~~~  404 (405)
                      +...           .+.++++++++++|+      +++.++++|+++++++||+.+ .  .++..||+||+++
T Consensus       306 ~~~~-----------~~~~~~~~~l~~~g~i~~~~~~~~~i~~~~~l~~~~~A~~~l~~--~~~~~gKvvi~~~  366 (366)
T 2cdc_A          306 VNGQ-----------KPHFQQAVVHLASWKTLYPKAAKMLITKTVSINDEKELLKVLRE--KEHGEIKIRILWE  366 (366)
T ss_dssp             CCCC-----------HHHHHHHHHHHHHHHHHSHHHHTTSEEEEEETTCHHHHHHHHHC--CCTTCCEEEEECC
T ss_pred             cCCC-----------HHHHHHHHHHHHcCCCCcccchhhcEEEEEcHHHHHHHHHHHhh--hcCCceEEEEecC
Confidence            6532           345788999999999      557788999999999999995 4  4567899999874

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=100.00  E-value=2.5e-43  Score=404.25  Aligned_cols=307  Identities=18%  Similarity=0.214  Sum_probs=255.7

Q ss_pred             EccCCCCccceEeeeecCCC-CC--CCeEEEEEEEeecChhhhhhhcccCCCC------CCCCCCCccceEEEEEEEcCC
Q psy2960          78 YNQHGTPLRVVTVENETLNS-VQ--KHEVVVKMLVAPVNPADINTIQGVYPIK------PTLPAVPGFEGVGEVVEVGSD  148 (405)
Q Consensus        78 ~~~~g~~~~~l~~~~~~~p~-~~--~~eVlVkv~a~gi~~~D~~~~~g~~~~~------~~~p~~lG~E~~G~V~~vG~~  148 (405)
                      ...+|.. +.+.|.+.+.+. +.  ++||+|||.++|||++|++++.|.++..      ...|+++|+|++|+|.     
T Consensus      1535 ~~~~g~l-~sl~~~~~~~~~~~~l~~~eVlVkV~aaglN~~Dv~~~~G~~~~~~~p~~~~~~~~~lG~E~aG~V~----- 1608 (2512)
T 2vz8_A         1535 VLSRGDL-SSIRWVCSPLHYALPASCQDRLCSVYYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRDA----- 1608 (2512)
T ss_dssp             ESSTTCT-TSEEEEECTTTTCCCHHHHTTEEEEEEEECCHHHHHHHHTSSCGGGCCSCCSCSSSCCCCEEEEEET-----
T ss_pred             ccCCCCc-CceEEEecCcccccCCCCCceEEEEEecccCHHHHHHHhCCCccccccccccccCCceEEEEEEEEc-----
Confidence            3344443 457888776543 33  7999999999999999999999976531      1346799999999883     


Q ss_pred             CCCCCCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHH
Q psy2960         149 VSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQ  228 (405)
Q Consensus       149 v~~~~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~  228 (405)
                           +||||+++. ..|+|+||++++++.++++|+++++++||+++++++|||+++.+.+++++|++|||||++|++|+
T Consensus      1609 -----vGdrV~g~~-~~G~~Aeyv~vp~~~v~~iPd~ls~~eAA~lp~~~~TA~~al~~~a~l~~Ge~VLI~gaaGgVG~ 1682 (2512)
T 2vz8_A         1609 -----SGRRVMGMV-PAEGLATSVLLLQHATWEVPSTWTLEEAASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQ 1682 (2512)
T ss_dssp             -----TSCCEEEEC-SSCCSBSEEECCGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTCEEEETTTTSHHHH
T ss_pred             -----cCCEEEEee-cCCceeeEEEcccceEEEeCCCCCHHHHHHhHHHHHHHHHHHHHHhcCCCCCEEEEEeCChHHHH
Confidence                 699999984 46999999999999999999999999999999999999999988899999999999999999999


Q ss_pred             HHHHHHHHcCCcEEEEecCCcchHHHHHHHHH----cCCcEEeChhh--HHH-HhhhcCCCCCcEEEECCCchhHHHHHH
Q psy2960         229 NVIQIARHWGLKTINIVRNRDDIDKLKSYLKS----LGADYVFTEEE--LRN-ISRDASIPKPKLALNCVGGNSATNLLR  301 (405)
Q Consensus       229 ~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~----lg~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~  301 (405)
                      +++|+|+++|++|++++++.++    ++.+++    +|+++++++++  +.+ +++.|+++|+|+||||++++.+..+++
T Consensus      1683 aAiqlAk~~Ga~Viat~~s~~k----~~~l~~~~~~lga~~v~~~~~~~~~~~i~~~t~g~GvDvVld~~g~~~l~~~l~ 1758 (2512)
T 2vz8_A         1683 AAIAIALSRGCRVFTTVGSAEK----RAYLQARFPQLDETCFANSRDTSFEQHVLRHTAGKGVDLVLNSLAEEKLQASVR 1758 (2512)
T ss_dssp             HHHHHHHHTTCEEEEEESCHHH----HHHHHHHCTTCCSTTEEESSSSHHHHHHHHTTTSCCEEEEEECCCHHHHHHHHT
T ss_pred             HHHHHHHHcCCEEEEEeCChhh----hHHHHhhcCCCCceEEecCCCHHHHHHHHHhcCCCCceEEEECCCchHHHHHHH
Confidence            9999999999999999876543    455554    78999998754  666 888999999999999999888889999


Q ss_pred             hcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceeeehhhH
Q psy2960         302 TLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFVTLKNF  381 (405)
Q Consensus       302 ~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~  381 (405)
                      +++++|+++.+|.............++.+++++.++++..+....+  ....+.++.+.+++.+|.+++.++++|+++++
T Consensus      1759 ~L~~~Gr~V~iG~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~--~~~~~~l~~l~~~~~~g~l~p~i~~~f~l~ei 1836 (2512)
T 2vz8_A         1759 CLAQHGRFLEIGKFDLSNNHALGMAVFLKNVTFHGILLDSLFEEGG--ATWQEVSELLKAGIQEGVVQPLKCTVFPRTKV 1836 (2512)
T ss_dssp             TEEEEEEEEECCCHHHHTTCEEEGGGGGGCCEEEECCGGGTTSSCC--HHHHHHHHHHHHHHTTTCSCCCCEEEEESSTH
T ss_pred             hcCCCcEEEEeecccccccCcccccccccCCcEEEeeHHHHhhhCH--HHHHHHHHHHHHHHHcCCcCCCcceEecHHHH
Confidence            9999999999996432222222345677999999988765433222  45667777788888899999999999999999


Q ss_pred             HHHHHHHhhhcCCCCceEEEEec
Q psy2960         382 QEALMNTMSIQGKSGVKYYIDFR  404 (405)
Q Consensus       382 ~~A~~~~~~~~~~~~gKvvl~~~  404 (405)
                      ++||+.+.  ++++.||+||+++
T Consensus      1837 ~eA~~~l~--~g~~~GKvVi~~~ 1857 (2512)
T 2vz8_A         1837 EAAFRYMA--QGKHIGKVVIQVR 1857 (2512)
T ss_dssp             HHHHHHHH--TTCCSSEEEEECS
T ss_pred             HHHHHhhh--ccCccceEEEECC
Confidence            99999999  8999999999874

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.93  E-value=2.6e-25  Score=195.58  Aligned_cols=193  Identities=18%  Similarity=0.258  Sum_probs=141.7

Q ss_pred             cceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHH
Q psy2960         177 DVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKS  256 (405)
Q Consensus       177 ~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~  256 (405)
                      +.++++|+++++++||+++++++|||+++.+.+++++|++|||+|++|++|++++|+++..|++|+++.+++    ++.+
T Consensus         2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~----~~~~   77 (198)
T 1pqw_A            2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD----AKRE   77 (198)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH----HHHH
T ss_pred             CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCH----HHHH
Confidence            468899999999999999999999999998878999999999999999999999999999999998887553    3456


Q ss_pred             HHHHcCCcEEeChhh--HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEeccCCC-CcccCcccccccCe
Q psy2960         257 YLKSLGADYVFTEEE--LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSRE-PVQIPTSAFIFKDI  332 (405)
Q Consensus       257 ~~~~lg~~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~k~~  332 (405)
                      .++++|++.++|..+  ..+ +.+.+.+.++|+++||+|.+....++++++++|+++.+|..... ...++. ..+.+++
T Consensus        78 ~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~  156 (198)
T 1pqw_A           78 MLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKKDVYADASLGL-AALAKSA  156 (198)
T ss_dssp             HHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCCTHHHHHHHHTEEEEEEEEECSCGGGTTTCEEEG-GGGTTTC
T ss_pred             HHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEECCchHHHHHHHHHhccCCEEEEEcCCCCcCcCcCCh-hHhcCCc
Confidence            778899998887543  444 77777667899999999988888899999999999999965421 222322 2346899


Q ss_pred             EEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcccCCcceee
Q psy2960         333 TLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKLAAPAHKFV  376 (405)
Q Consensus       333 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~  376 (405)
                      ++.++.+ .+.... .+....+.++++++++++|++++.+.++|
T Consensus       157 ~~~~~~~-~~~~~~-~~~~~~~~~~~~~~l~~~g~l~~~~~~~~  198 (198)
T 1pqw_A          157 SFSVVDL-DLNLKL-QPARYRQLLQHILQHVADGKLEVLPVTAF  198 (198)
T ss_dssp             EEEECCH-HHHHHH-CHHHHHHHHHHHHHHHHTTSSCCCCCC--
T ss_pred             EEEEEeh-HHhhcc-CHHHHHHHHHHHHHHHHcCCccCCCCCcC
Confidence            9988755 222110 12344677999999999999998765554

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.95  E-value=1.6e-11  Score=119.11  Aligned_cols=172  Identities=15%  Similarity=0.152  Sum_probs=125.3

Q ss_pred             CCCccceEEEEEEEcCCCCCCCCCCEEEe--------cCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHH
Q psy2960         132 AVPGFEGVGEVVEVGSDVSSLAVGDHVIP--------DTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYR  203 (405)
Q Consensus       132 ~~lG~E~~G~V~~vG~~v~~~~~GdrV~~--------~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~  203 (405)
                      ...|+|.++.|.++|++++++.+|++++.        .....|++++|+......++++|+.++.++++.. .+..++|.
T Consensus        75 ~~~g~~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~~~~~~~~~~~~a~~~~k~v~~~~~~~~-~~~s~a~~  153 (404)
T 1gpj_A           75 VKRGSEAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGTLDEALKIVFRRAINLGKRAREETRISE-GAVSIGSA  153 (404)
T ss_dssp             EEEHHHHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSSTTC-SCCSHHHH
T ss_pred             eecCchHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCCchHHHHHHHHHHhhhhccCcchhhhcC-CCccHHHH
Confidence            45899999999999999999999999731        1122477899998888889999999888876653 35667887


Q ss_pred             HHHhhc---CCCCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHH-HHHHHcCCcEEeChhhHHHHhhh
Q psy2960         204 MLKDYN---SLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLK-SYLKSLGADYVFTEEELRNISRD  278 (405)
Q Consensus       204 al~~~~---~~~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~-~~~~~lg~~~v~~~~d~~~i~~~  278 (405)
                      ++....   +-.+|++|+|+|+ |++|.++++.++..|+ +++++.++.    .+. +.++++|++ +++..++.+..  
T Consensus       154 av~~a~~~~~~l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~----~ra~~la~~~g~~-~~~~~~l~~~l--  225 (404)
T 1gpj_A          154 AVELAERELGSLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTY----ERAVELARDLGGE-AVRFDELVDHL--  225 (404)
T ss_dssp             HHHHHHHHHSCCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSH----HHHHHHHHHHTCE-ECCGGGHHHHH--
T ss_pred             HHHHHHHHhccccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCH----HHHHHHHHHcCCc-eecHHhHHHHh--
Confidence            764322   1258999999999 9999999999999999 666665442    233 566788886 45555554421  


Q ss_pred             cCCCCCcEEEECCCchhH---HHHHHh--c--ccCCEEEEEecc
Q psy2960         279 ASIPKPKLALNCVGGNSA---TNLLRT--L--VSKGVMVTYGGM  315 (405)
Q Consensus       279 t~g~g~Dvvld~~g~~~~---~~~~~~--l--~~~G~~v~~g~~  315 (405)
                         .++|+|++|++....   ...+..  +  +++|.++.++..
T Consensus       226 ---~~aDvVi~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia  266 (404)
T 1gpj_A          226 ---ARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIA  266 (404)
T ss_dssp             ---HTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred             ---cCCCEEEEccCCCCceecHHHHHHHHHhccCCCCEEEEEcc
Confidence               268999999986432   145555  4  567877777743

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.90  E-value=9.5e-09  Score=98.03  Aligned_cols=143  Identities=15%  Similarity=0.134  Sum_probs=95.5

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE--EeC--hhhHHH-HhhhcCCCCCcEEE
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY--VFT--EEELRN-ISRDASIPKPKLAL  288 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~--v~~--~~d~~~-i~~~t~g~g~Dvvl  288 (405)
                      +++|+|+|+ |++|+++++.++.+|++|+++.++.    ++++.+.+++++.  +++  ..++.+ +.      ++|+||
T Consensus       167 ~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~----~r~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~DvVI  235 (361)
T 1pjc_A          167 PGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINV----ERLSYLETLFGSRVELLYSNSAEIETAVA------EADLLI  235 (361)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHHGGGSEEEECCHHHHHHHHH------TCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCH----HHHHHHHHhhCceeEeeeCCHHHHHHHHc------CCCEEE
Confidence            499999999 9999999999999999877775443    3456666665443  232  233333 32      689999


Q ss_pred             ECCCchh-------HHHHHHhcccCCEEEEEeccCCC------CcccCcccccccCeEEEEEecchh-hhhhccHHHHHH
Q psy2960         289 NCVGGNS-------ATNLLRTLVSKGVMVTYGGMSRE------PVQIPTSAFIFKDITLRGHWMTRW-QKENKESAERKS  354 (405)
Q Consensus       289 d~~g~~~-------~~~~~~~l~~~G~~v~~g~~~~~------~~~~~~~~~~~k~~~~~g~~~~~~-~~~~~~~~~~~~  354 (405)
                      ||++.+.       ....++.++++|+++.++...+.      +.+++...+..+++++.++..... ............
T Consensus       236 ~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~~~gg~~e~~~~~~~~~~~~~~~~v~~~~~~~lp~~~~~~~s~~~~~~  315 (361)
T 1pjc_A          236 GAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYGVPNMPGAVPWTATQALNNS  315 (361)
T ss_dssp             ECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTCTTCCSBTTCCCCCSSSCEEEETTEEEECCSCGGGGCHHHHHHHHHHH
T ss_pred             ECCCcCCCCCCeecCHHHHhhCCCCCEEEEEecCCCCCCccccCCCCCCCEEEECCEEEEEeCCcchhhHHHHHHHHHHH
Confidence            9998654       45678999999999999865433      334555566678888877542111 100000112245


Q ss_pred             HHHHHHHHHHcCc
Q psy2960         355 MMNELTEMMRTGK  367 (405)
Q Consensus       355 ~~~~~~~~~~~g~  367 (405)
                      .++.+++++++|.
T Consensus       316 ~~~~l~~l~~~G~  328 (361)
T 1pjc_A          316 TLPYVVKLANQGL  328 (361)
T ss_dssp             HHHHHHHHHHHGG
T ss_pred             HHHHHHHHHhCCc
Confidence            6788899998884

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.70  E-value=4.8e-08  Score=93.95  Aligned_cols=120  Identities=16%  Similarity=0.286  Sum_probs=82.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhh--------------------
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEE--------------------  271 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d--------------------  271 (405)
                      +|++|+|.|+ |++|++++++|+.+|++|+++.++.+    +++.++++|++.+ ++.++                    
T Consensus       171 ~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~~~d~~~~----~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~  245 (384)
T 1l7d_A          171 PPARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAA----TKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRK  245 (384)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCST----THHHHHHTTCEECCC-----------------------C
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHcCCeEEeecccccccccccccchhhcCHHHHh
Confidence            6899999998 99999999999999998666654433    3566677998765 23211                    


Q ss_pred             -HHH-HhhhcCCCCCcEEEECC---Cchh----HHHHHHhcccCCEEEEEeccCCCCc--ccCcccccccCeEEEEEec
Q psy2960         272 -LRN-ISRDASIPKPKLALNCV---GGNS----ATNLLRTLVSKGVMVTYGGMSREPV--QIPTSAFIFKDITLRGHWM  339 (405)
Q Consensus       272 -~~~-i~~~t~g~g~Dvvld~~---g~~~----~~~~~~~l~~~G~~v~~g~~~~~~~--~~~~~~~~~k~~~~~g~~~  339 (405)
                       ..+ +.+..  .++|+||+|+   |.+.    ....++.|++++.++.++...+...  ..+...+..+++++.++..
T Consensus       246 ~~~~~l~~~~--~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva~~~gg~~~~~~~~~~~~~~~v~i~g~~~  322 (384)
T 1l7d_A          246 KQAEAVLKEL--VKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTN  322 (384)
T ss_dssp             CHHHHHHHHH--TTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSSTTCCTTCEEEETTEEEECCSS
T ss_pred             hhHHHHHHHh--CCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEecCCCCCeecccCCcEEEECCEEEEEeCC
Confidence             111 33332  3689999999   5322    2567899999999999985433222  2233445668899888653

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.69  E-value=1.1e-07  Score=90.94  Aligned_cols=142  Identities=15%  Similarity=0.201  Sum_probs=86.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH-cCCcEEeC---hhhHHH-HhhhcCCCCCcEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADYVFT---EEELRN-ISRDASIPKPKLA  287 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~-lg~~~v~~---~~d~~~-i~~~t~g~g~Dvv  287 (405)
                      ++++|+|+|+ |++|+++++.++.+|++|+++.++.    .+++.+.+ +|.+...+   ..++.+ +.      ++|+|
T Consensus       165 ~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~----~~~~~~~~~~g~~~~~~~~~~~~l~~~~~------~~DvV  233 (369)
T 2eez_A          165 APASVVILGG-GTVGTNAAKIALGMGAQVTILDVNH----KRLQYLDDVFGGRVITLTATEANIKKSVQ------HADLL  233 (369)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHTTTSEEEEECCHHHHHHHHH------HCSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCH----HHHHHHHHhcCceEEEecCCHHHHHHHHh------CCCEE
Confidence            4699999999 9999999999999999888776443    33444544 77763332   233333 32      57999


Q ss_pred             EECCCchh-------HHHHHHhcccCCEEEEEeccCCC------CcccCcccccccCeEEEEEecchhhhhhcc--HH-H
Q psy2960         288 LNCVGGNS-------ATNLLRTLVSKGVMVTYGGMSRE------PVQIPTSAFIFKDITLRGHWMTRWQKENKE--SA-E  351 (405)
Q Consensus       288 ld~~g~~~-------~~~~~~~l~~~G~~v~~g~~~~~------~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~--~~-~  351 (405)
                      ++|++...       ....++.++++|+++.++...+.      +.+++...+..+++++.++..-.  ...+.  .. .
T Consensus       234 i~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~~~gg~~d~~ep~~~~~~~~~~~~v~~~~v~~lp--~~~p~~as~~~  311 (369)
T 2eez_A          234 IGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAVDQGGCVETIRPTTHAEPTYVVDGVVHYGVANMP--GAVPRTSTFAL  311 (369)
T ss_dssp             EECCC-------CCSCHHHHTTSCTTCEEEECC-------------------CEETTEEEECCSCSG--GGSHHHHHHHH
T ss_pred             EECCCCCccccchhHHHHHHHhhcCCCEEEEEecCCCCCCCcccCCCCCCCEEEECCEEEEeeCCcc--hhcHHHHHHHH
Confidence            99998653       45678999999999999865432      22333334556788877754211  11110  01 1


Q ss_pred             HHHHHHHHHHHHHcCc
Q psy2960         352 RKSMMNELTEMMRTGK  367 (405)
Q Consensus       352 ~~~~~~~~~~~~~~g~  367 (405)
                      ....++.+.+++.+|.
T Consensus       312 ~~~~~~~l~~l~~~g~  327 (369)
T 2eez_A          312 TNQTLPYVLKLAEKGL  327 (369)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCh
Confidence            2455777888887774

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.63  E-value=3.1e-07  Score=87.99  Aligned_cols=143  Identities=17%  Similarity=0.134  Sum_probs=90.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH-cCCcEEe---ChhhHHH-HhhhcCCCCCcEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADYVF---TEEELRN-ISRDASIPKPKLA  287 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~-lg~~~v~---~~~d~~~-i~~~t~g~g~Dvv  287 (405)
                      +|++|+|.|+ |++|+++++.|+.+|++|+++.++    +.+++.+.+ +|++...   +..++.+ +.      ++|+|
T Consensus       167 ~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~----~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~------~aDvV  235 (377)
T 2vhw_A          167 EPADVVVIGA-GTAGYNAARIANGMGATVTVLDIN----IDKLRQLDAEFCGRIHTRYSSAYELEGAVK------RADLV  235 (377)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESC----HHHHHHHHHHTTTSSEEEECCHHHHHHHHH------HCSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCC----HHHHHHHHHhcCCeeEeccCCHHHHHHHHc------CCCEE
Confidence            5899999999 999999999999999988777544    334555555 6775322   2333444 32      57999


Q ss_pred             EECCCchh-------HHHHHHhcccCCEEEEEeccCC------CCcccCcccccccCeEEEEEecchh-hhhhccHHHHH
Q psy2960         288 LNCVGGNS-------ATNLLRTLVSKGVMVTYGGMSR------EPVQIPTSAFIFKDITLRGHWMTRW-QKENKESAERK  353 (405)
Q Consensus       288 ld~~g~~~-------~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~~k~~~~~g~~~~~~-~~~~~~~~~~~  353 (405)
                      ++|++.+.       ....++.|+++|.++.++...+      .+.+++...+..+++++.+..--.. ...........
T Consensus       236 i~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va~~~Ggv~e~~ep~~~~~~~~~~~~v~i~~~phl~~~~~~~as~~~~~  315 (377)
T 2vhw_A          236 IGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIAIDQGGCFEGSRPTTYDHPTFAVHDTLFYCVANMPASVPKTSTYALTN  315 (377)
T ss_dssp             EECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGGGGTTCSBTTCCCBCSSSCEEEETTEEEECBTTGGGGSHHHHHHHHHH
T ss_pred             EECCCcCCCCCcceecHHHHhcCCCCcEEEEEecCCCCccccccCCCCCCCEEEECCEEEEecCCcchhhHHHHHHHHHH
Confidence            99997654       4567899999999999985432      2333444445567877765432111 10000001113


Q ss_pred             HHHHHHHHHHHcC
Q psy2960         354 SMMNELTEMMRTG  366 (405)
Q Consensus       354 ~~~~~~~~~~~~g  366 (405)
                      ..++.+.+++.+|
T Consensus       316 ~~~~~~~~l~~~g  328 (377)
T 2vhw_A          316 ATMPYVLELADHG  328 (377)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCC
Confidence            3456667777666

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.39  E-value=3.3e-06  Score=81.39  Aligned_cols=119  Identities=13%  Similarity=0.174  Sum_probs=79.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe-Ch---------------hhH----
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TE---------------EEL----  272 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~-~~---------------~d~----  272 (405)
                      +|++|+|.|+ |.+|++++++|+.+|++|+++.++.+    +++.++++|++.+. +.               .++    
T Consensus       171 ~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~v~D~~~~----~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  245 (401)
T 1x13_A          171 PPAKVMVIGA-GVAGLAAIGAANSLGAIVRAFDTRPE----VKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAE  245 (401)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCGG----GHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHH----HHHHHHHcCCEEEEecccccccccccchhhccHHHHHHH
Confidence            5899999998 99999999999999998776654433    35566788987552 21               111    


Q ss_pred             HH-HhhhcCCCCCcEEEECCCch-----h--HHHHHHhcccCCEEEEEeccCCCCcccC--cc-cccccCeEEEEEe
Q psy2960         273 RN-ISRDASIPKPKLALNCVGGN-----S--ATNLLRTLVSKGVMVTYGGMSREPVQIP--TS-AFIFKDITLRGHW  338 (405)
Q Consensus       273 ~~-i~~~t~g~g~Dvvld~~g~~-----~--~~~~~~~l~~~G~~v~~g~~~~~~~~~~--~~-~~~~k~~~~~g~~  338 (405)
                      .. +.+..  .++|+||+|++.+     .  ....++.|++++.++.++...+......  .. .+..+++++.|+.
T Consensus       246 ~~~l~e~~--~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~~~~~~p~~~~~gv~i~g~~  320 (401)
T 1x13_A          246 MELFAAQA--KEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIGYT  320 (401)
T ss_dssp             HHHHHHHH--HHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTTCCTTSEEECTTSCEEECCS
T ss_pred             HHHHHHHh--CCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCcccCCCceEEECCEEEEeeC
Confidence            11 22332  2589999995321     2  2567899999999999985433333222  12 2556889999864

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.33  E-value=3e-06  Score=83.32  Aligned_cols=157  Identities=14%  Similarity=0.109  Sum_probs=101.9

Q ss_pred             CCCCCccceEEEEEEEcCCCCCCCCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhc
Q psy2960         130 LPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYN  209 (405)
Q Consensus       130 ~p~~lG~E~~G~V~~vG~~v~~~~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~  209 (405)
                      +|.++ ++++|+|+++|.+|+++      ..+ ...|.+...+....+.+.+   . .+   ..++....++++++....
T Consensus       204 ~p~~~-~~i~GvveetgtGVd~l------~a~-~~~Gilv~~~~~vn~sVae---~-~~---r~l~~~~~s~~~g~~r~~  268 (494)
T 3ce6_A          204 WTKIA-ESVKGVTEETTTGVLRL------YQF-AAAGDLAFPAINVNDSVTK---S-KF---DNKYGTRHSLIDGINRGT  268 (494)
T ss_dssp             HHHHH-HHCCCEEECSHHHHHHH------HHH-HHTTCCCSCEEECTTSHHH---H-TT---HHHHHHHHHHHHHHHHHH
T ss_pred             chhhh-cCeEEEEEEeCCChhHH------HHH-HHcCCEEEecCCccHHHHH---H-HH---hhhhhhhhhhhHHHHhcc
Confidence            44455 89999999999988765      111 0123332222211111111   0 00   111223455677764432


Q ss_pred             -CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEE
Q psy2960         210 -SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLAL  288 (405)
Q Consensus       210 -~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvl  288 (405)
                       ...+|++|+|.|+ |.+|..+++.++.+|++|+++..+    +.+.+.++++|++ +.+.++.  +      .+.|+|+
T Consensus       269 ~~~l~GktV~IiG~-G~IG~~~A~~lka~Ga~Viv~d~~----~~~~~~A~~~Ga~-~~~l~e~--l------~~aDvVi  334 (494)
T 3ce6_A          269 DALIGGKKVLICGY-GDVGKGCAEAMKGQGARVSVTEID----PINALQAMMEGFD-VVTVEEA--I------GDADIVV  334 (494)
T ss_dssp             CCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSC----HHHHHHHHHTTCE-ECCHHHH--G------GGCSEEE
T ss_pred             CCCCCcCEEEEEcc-CHHHHHHHHHHHHCCCEEEEEeCC----HHHHHHHHHcCCE-EecHHHH--H------hCCCEEE
Confidence             2679999999998 999999999999999988777433    3446677889986 4433221  2      3579999


Q ss_pred             ECCCchhH-H-HHHHhcccCCEEEEEecc
Q psy2960         289 NCVGGNSA-T-NLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       289 d~~g~~~~-~-~~~~~l~~~G~~v~~g~~  315 (405)
                      +|+|...+ . ..++.++++|+++.+|..
T Consensus       335 ~atgt~~~i~~~~l~~mk~ggilvnvG~~  363 (494)
T 3ce6_A          335 TATGNKDIIMLEHIKAMKDHAILGNIGHF  363 (494)
T ss_dssp             ECSSSSCSBCHHHHHHSCTTCEEEECSSS
T ss_pred             ECCCCHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            99997653 3 678999999999999854

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.12  E-value=2.3e-05  Score=70.05  Aligned_cols=106  Identities=10%  Similarity=0.047  Sum_probs=67.4

Q ss_pred             HHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC-cEE-eChhhHHHHhhh
Q psy2960         201 AYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA-DYV-FTEEELRNISRD  278 (405)
Q Consensus       201 a~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~-~~v-~~~~d~~~i~~~  278 (405)
                      +.+.+ ...++++|++||..|+ | .|..++++++. +.+++++--+++..+...+.+...+. +.+ +...|.   .+.
T Consensus        80 ~~~~~-~~~~~~~~~~vldiG~-G-~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~  152 (248)
T 2yvl_A           80 SFYIA-LKLNLNKEKRVLEFGT-G-SGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDF---KDA  152 (248)
T ss_dssp             HHHHH-HHTTCCTTCEEEEECC-T-TSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCT---TTS
T ss_pred             HHHHH-HhcCCCCCCEEEEeCC-C-ccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcCh---hhc
Confidence            33344 4478899999999998 5 69999999998 77777774333222222233333443 111 111222   222


Q ss_pred             c-CCCCCcEEEECCCc--hhHHHHHHhcccCCEEEEEe
Q psy2960         279 A-SIPKPKLALNCVGG--NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       279 t-~g~g~Dvvld~~g~--~~~~~~~~~l~~~G~~v~~g  313 (405)
                      . ...++|+|+...+.  ..+..+.+.|+++|+++...
T Consensus       153 ~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  190 (248)
T 2yvl_A          153 EVPEGIFHAAFVDVREPWHYLEKVHKSLMEGAPVGFLL  190 (248)
T ss_dssp             CCCTTCBSEEEECSSCGGGGHHHHHHHBCTTCEEEEEE
T ss_pred             ccCCCcccEEEECCcCHHHHHHHHHHHcCCCCEEEEEe
Confidence            2 34579999988775  34566789999999998876

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.09  E-value=2.2e-05  Score=74.27  Aligned_cols=119  Identities=13%  Similarity=0.204  Sum_probs=78.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe-C--------h----------hhHH
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-T--------E----------EELR  273 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~-~--------~----------~d~~  273 (405)
                      ++.+|+|.|+ |.+|+.+++.|+.+|++|++..++.+    +++.+.++|++.+. +        +          .+..
T Consensus       183 ~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~----~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~  257 (381)
T 3p2y_A          183 KPASALVLGV-GVAGLQALATAKRLGAKTTGYDVRPE----VAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQ  257 (381)
T ss_dssp             CCCEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSGG----GHHHHHHTTCEECCCC-------------CHHHHHHHHH
T ss_pred             CCCEEEEECc-hHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHH
Confidence            6799999999 99999999999999999877754433    46677788886432 0        0          0011


Q ss_pred             HHhhhcCCCCCcEEEECCCch-------hHHHHHHhcccCCEEEEEeccCCCCcc--cCcccccccCeEEEEEe
Q psy2960         274 NISRDASIPKPKLALNCVGGN-------SATNLLRTLVSKGVMVTYGGMSREPVQ--IPTSAFIFKDITLRGHW  338 (405)
Q Consensus       274 ~i~~~t~g~g~Dvvld~~g~~-------~~~~~~~~l~~~G~~v~~g~~~~~~~~--~~~~~~~~k~~~~~g~~  338 (405)
                      .+.+.  -.+.|+||.|+..+       .....++.+++++.++.++...+....  .+...+..+++++.+..
T Consensus       258 ~l~e~--l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~e~t~~~~~~~~~gV~~~~v~  329 (381)
T 3p2y_A          258 ALEDA--ITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGGNCELTEPGRTIVHHGVTITSPL  329 (381)
T ss_dssp             HHHHH--HTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTTCCTTCEEEETTEEEECCS
T ss_pred             HHHHH--HhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCCCccccccCCCeEEECCEEEEeeC
Confidence            13333  25689999986322       235678999999999999865444322  12222334566666543

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.07  E-value=2.7e-05  Score=74.32  Aligned_cols=119  Identities=18%  Similarity=0.221  Sum_probs=78.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeC-------------h-----hhH--
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT-------------E-----EEL--  272 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~-------------~-----~d~--  272 (405)
                      ++.+|+|.|+ |.+|+.++++|+.+|++|++.-.+.    .+++.++++|++.+..             +     +++  
T Consensus       189 ~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~----~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~  263 (405)
T 4dio_A          189 PAAKIFVMGA-GVAGLQAIATARRLGAVVSATDVRP----AAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQV  263 (405)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSST----THHHHHHHTTCEECCCCC-----------------CHHHH
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCH----HHHHHHHHcCCceeecccccccccccccchhhhcchhhhh
Confidence            6799999999 9999999999999999887764433    3467777888863321             0     000  


Q ss_pred             --HH-HhhhcCCCCCcEEEECCCch-------hHHHHHHhcccCCEEEEEeccCCCCccc--CcccccccCeEEEEEe
Q psy2960         273 --RN-ISRDASIPKPKLALNCVGGN-------SATNLLRTLVSKGVMVTYGGMSREPVQI--PTSAFIFKDITLRGHW  338 (405)
Q Consensus       273 --~~-i~~~t~g~g~Dvvld~~g~~-------~~~~~~~~l~~~G~~v~~g~~~~~~~~~--~~~~~~~k~~~~~g~~  338 (405)
                        .. +.+.  -.+.|+||.|+..+       .....++.|+++..++.++...+.....  +...+..+++++.+..
T Consensus       264 ~~~~~l~e~--l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~t~~~~~~~~~GV~~~gv~  339 (405)
T 4dio_A          264 KQAALVAEH--IAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERGGNIEGAEAGKVTEVGGVRIVGHL  339 (405)
T ss_dssp             HHHHHHHHH--HHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTTCCTTEEEEETTEEEEECS
T ss_pred             hhHhHHHHH--hcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCCCCccccCCCCeEEECCEEEEEeC
Confidence              11 2222  14679999996422       2356789999999999998544333222  2223345677777755

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=97.89  E-value=0.00012  Score=65.91  Aligned_cols=81  Identities=16%  Similarity=0.059  Sum_probs=59.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---C---hhhHHH-Hhhh-cCCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRD-ASIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~d~~~-i~~~-t~g~g~  284 (405)
                      .|+++||.||++|+|.+.++.+...|++|+.+.++.+..++..+.+++.|.+...   |   .++... +.+. ...+++
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i   87 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIHV   87 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCCC
Confidence            6899999999999999999999999999998877666555556666777765543   2   222333 2222 124579


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        88 DiLVNNAG~   96 (255)
T 4g81_D           88 DILINNAGI   96 (255)
T ss_dssp             CEEEECCCC
T ss_pred             cEEEECCCC
Confidence            999999983

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=97.80  E-value=7.2e-05  Score=68.44  Aligned_cols=102  Identities=11%  Similarity=0.081  Sum_probs=69.3

Q ss_pred             hcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcE
Q psy2960         208 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKL  286 (405)
Q Consensus       208 ~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dv  286 (405)
                      .+++++|++||..|+ |+.|..++.+|+..|++|+++-.+++..+...+.+.+.|.+.+ +-..|.   .++. ...||+
T Consensus       117 la~l~~g~rVLDIGc-G~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa---~~l~-d~~FDv  191 (298)
T 3fpf_A          117 LGRFRRGERAVFIGG-GPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDE---TVID-GLEFDV  191 (298)
T ss_dssp             HTTCCTTCEEEEECC-CSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCG---GGGG-GCCCSE
T ss_pred             HcCCCCcCEEEEECC-CccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECch---hhCC-CCCcCE
Confidence            478999999999999 7667888888998899999986555444433444444565322 111122   1222 467999


Q ss_pred             EEECCCch----hHHHHHHhcccCCEEEEEec
Q psy2960         287 ALNCVGGN----SATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       287 vld~~g~~----~~~~~~~~l~~~G~~v~~g~  314 (405)
                      |+.+...+    .+....+.|+|||+++....
T Consensus       192 V~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          192 LMVAALAEPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             EEECTTCSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             EEECCCccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence            99765532    34567799999999998763

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.73  E-value=1.2e-05  Score=65.88  Aligned_cols=104  Identities=11%  Similarity=0.167  Sum_probs=68.8

Q ss_pred             HHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH-Hhh
Q psy2960         199 CTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISR  277 (405)
Q Consensus       199 ~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~  277 (405)
                      .++++++.. .....|++|+|.|+ |.+|.+.++.++..|+++++..++.+   ...+++.++|.+. ....+..+ +. 
T Consensus         7 sv~~~a~~~-~~~~~~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~---~~~~~a~~~~~~~-~~~~~~~~~~~-   79 (144)
T 3oj0_A            7 SIPSIVYDI-VRKNGGNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNID---HVRAFAEKYEYEY-VLINDIDSLIK-   79 (144)
T ss_dssp             SHHHHHHHH-HHHHCCCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHH---HHHHHHHHHTCEE-EECSCHHHHHH-
T ss_pred             cHHHHHHHH-HHhccCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHH---HHHHHHHHhCCce-EeecCHHHHhc-
Confidence            345666544 33345999999998 99999999999889999555544332   2234456677543 23334433 32 


Q ss_pred             hcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEec
Q psy2960         278 DASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       278 ~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~  314 (405)
                           ++|+|++|++..........+++++.++.++.
T Consensus        80 -----~~Divi~at~~~~~~~~~~~l~~g~~vid~~~  111 (144)
T 3oj0_A           80 -----NNDVIITATSSKTPIVEERSLMPGKLFIDLGN  111 (144)
T ss_dssp             -----TCSEEEECSCCSSCSBCGGGCCTTCEEEECCS
T ss_pred             -----CCCEEEEeCCCCCcEeeHHHcCCCCEEEEccC
Confidence                 57999999997643222377888889888874

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=97.73  E-value=0.00028  Score=63.71  Aligned_cols=79  Identities=13%  Similarity=0.226  Sum_probs=55.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Chhh---HHH----HhhhcCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEEE---LRN----ISRDASIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~d---~~~----i~~~t~g~  282 (405)
                      .|.+|||.||+|++|.+.+..+...|++|+.+.++.++.++..+.+.+.|....+   |-.+   ...    +.+.  .+
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~--~g  105 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAA--HG  105 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH--HS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHh--cC
Confidence            5789999999999999999999999999999987765555555555555653322   3222   222    2222  24


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      .+|+++++.|.
T Consensus       106 ~id~lv~~Ag~  116 (262)
T 3rkr_A          106 RCDVLVNNAGV  116 (262)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            68999999885

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=97.70  E-value=0.00035  Score=63.77  Aligned_cols=103  Identities=17%  Similarity=0.237  Sum_probs=66.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcch-HHHHHHHHHcCCcEEe---Chh---hHHH-Hhhhc-CCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDI-DKLKSYLKSLGADYVF---TEE---ELRN-ISRDA-SIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~-~~~~~~~~~lg~~~v~---~~~---d~~~-i~~~t-~g~g  283 (405)
                      .|+++||.||+|++|.+.++.+...|++|+++.++.+.. +...+.+.+.|.+..+   |-.   +... +.+.. ..++
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~  107 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGK  107 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            578999999999999999999999999999988765431 2223444555654322   322   2222 22111 0246


Q ss_pred             CcEEEECCCch--------------------------hHHHHHHhcccCCEEEEEecc
Q psy2960         284 PKLALNCVGGN--------------------------SATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       284 ~Dvvld~~g~~--------------------------~~~~~~~~l~~~G~~v~~g~~  315 (405)
                      +|+++++.|..                          ....++..++.+|+|+.++..
T Consensus       108 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~  165 (283)
T 1g0o_A          108 LDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSI  165 (283)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCG
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEech
Confidence            89999998731                          012234555677999999864

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=97.68  E-value=0.00039  Score=63.11  Aligned_cols=103  Identities=16%  Similarity=0.184  Sum_probs=67.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc-chHHHHHHHHHcCCcEEe---Chh---hHHH-Hhhhc-CCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD-DIDKLKSYLKSLGADYVF---TEE---ELRN-ISRDA-SIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~-~~~~~~~~~~~lg~~~v~---~~~---d~~~-i~~~t-~g~g  283 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.+ ..+...+.+++.|....+   |-.   +... +.+.. ..++
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  109 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEALGG  109 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            6899999999999999999999999999988865532 233334445555654332   322   2222 22111 1247


Q ss_pred             CcEEEECCCch--------------------------hHHHHHHhcccCCEEEEEecc
Q psy2960         284 PKLALNCVGGN--------------------------SATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       284 ~Dvvld~~g~~--------------------------~~~~~~~~l~~~G~~v~~g~~  315 (405)
                      +|+++++.|..                          ....++..++++|+++.++..
T Consensus       110 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~  167 (271)
T 3v2g_A          110 LDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSN  167 (271)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCG
T ss_pred             CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeCh
Confidence            99999998731                          012234566778999999753

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=97.66  E-value=0.0002  Score=64.45  Aligned_cols=78  Identities=17%  Similarity=0.242  Sum_probs=55.4

Q ss_pred             CCCEEEEeCCCc--HHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc--EE--eCh---hhHHH----Hhhhc
Q psy2960         213 PGDVVIQNGANS--ACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YV--FTE---EELRN----ISRDA  279 (405)
Q Consensus       213 ~g~~VLI~ga~G--~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~--~v--~~~---~d~~~----i~~~t  279 (405)
                      .|+++||.||+|  |+|.+.++.+...|++|+.+.++.+..++..+.+.+++..  ..  .|-   ++...    +.+. 
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-   83 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKD-   83 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHH-
Confidence            689999999876  8999999999999999999988766655555666666542  22  232   22222    2222 


Q ss_pred             CCCCCcEEEECCC
Q psy2960         280 SIPKPKLALNCVG  292 (405)
Q Consensus       280 ~g~g~Dvvld~~g  292 (405)
                       -+++|+++++.|
T Consensus        84 -~G~iD~lvnnAg   95 (256)
T 4fs3_A           84 -VGNIDGVYHSIA   95 (256)
T ss_dssp             -HCCCSEEEECCC
T ss_pred             -hCCCCEEEeccc
Confidence             257999999987

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=97.66  E-value=0.00013  Score=66.36  Aligned_cols=98  Identities=18%  Similarity=0.242  Sum_probs=69.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Ch---hhHHH----HhhhcCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TE---EELRN----ISRDASIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~---~d~~~----i~~~t~g~  282 (405)
                      .|+++||.||++|+|.+.++.+...|++|+++.++.+.   ..+...++|.....   |-   ++...    +.+.  -+
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~---l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~--~G  102 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDV---LDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAE--AG  102 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHH--HS
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHH---HHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHH--cC
Confidence            68999999999999999999999999999998866543   23445666654332   32   22222    2222  24


Q ss_pred             CCcEEEECCCch--------------------------hHHHHHHhcccCCEEEEEecc
Q psy2960         283 KPKLALNCVGGN--------------------------SATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       283 g~Dvvld~~g~~--------------------------~~~~~~~~l~~~G~~v~~g~~  315 (405)
                      ++|+++++.|..                          ..+.++..|+++|++|.+++.
T Consensus       103 ~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~  161 (273)
T 4fgs_A          103 RIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGST  161 (273)
T ss_dssp             CEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCG
T ss_pred             CCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeeh
Confidence            699999999842                          123345677889999999864

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=97.64  E-value=0.0002  Score=64.31  Aligned_cols=81  Identities=16%  Similarity=0.202  Sum_probs=58.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Chh---hHHH-HhhhcCCCCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEE---ELRN-ISRDASIPKPK  285 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~---d~~~-i~~~t~g~g~D  285 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.++.++..+.+++.|....+   |-.   +... +.+....+++|
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~id   85 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAPLE   85 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSCEE
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCCce
Confidence            5789999999999999999999999999999998877666666666666654322   322   2222 22221115789


Q ss_pred             EEEECCCc
Q psy2960         286 LALNCVGG  293 (405)
Q Consensus       286 vvld~~g~  293 (405)
                      +++++.|.
T Consensus        86 ~lv~nAg~   93 (252)
T 3h7a_A           86 VTIFNVGA   93 (252)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999983

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=97.62  E-value=0.00059  Score=61.85  Aligned_cols=104  Identities=21%  Similarity=0.276  Sum_probs=68.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc-chHHHHHHHHHcCCcEEe---Chhh---HHH-Hhhhc-CCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD-DIDKLKSYLKSLGADYVF---TEEE---LRN-ISRDA-SIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~-~~~~~~~~~~~lg~~~v~---~~~d---~~~-i~~~t-~g~g  283 (405)
                      .|+++||.||++++|.+.++.+...|++|+++.++.+ ..+...+.+++.|.+..+   |-.|   ... +.+.. ..++
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   96 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFGH   96 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5899999999999999999999999999998765433 223334455566654332   3222   222 22111 1246


Q ss_pred             CcEEEECCCch--------------------------hHHHHHHhcccCCEEEEEeccC
Q psy2960         284 PKLALNCVGGN--------------------------SATNLLRTLVSKGVMVTYGGMS  316 (405)
Q Consensus       284 ~Dvvld~~g~~--------------------------~~~~~~~~l~~~G~~v~~g~~~  316 (405)
                      +|+++++.|..                          ....++..+.++|+++.++...
T Consensus        97 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~  155 (270)
T 3is3_A           97 LDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNT  155 (270)
T ss_dssp             CCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTT
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCch
Confidence            89999998831                          0123456677899999998654

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=97.61  E-value=0.00022  Score=64.01  Aligned_cols=78  Identities=15%  Similarity=0.234  Sum_probs=58.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---C---hhhHHH----HhhhcCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN----ISRDASIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~d~~~----i~~~t~g~  282 (405)
                      +|+++||.||++|+|.+.++.....|++|+.+.++.+..++..+.+++.|.+...   |   .++...    +.+.  -+
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~--~G   83 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFET--YS   83 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH--HS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH--cC
Confidence            5899999999999999999999999999999887766666666677777775443   3   222222    2222  24


Q ss_pred             CCcEEEECCC
Q psy2960         283 KPKLALNCVG  292 (405)
Q Consensus       283 g~Dvvld~~g  292 (405)
                      ++|+++|+.|
T Consensus        84 ~iDiLVNNAG   93 (254)
T 4fn4_A           84 RIDVLCNNAG   93 (254)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCc
Confidence            7999999987

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=97.61  E-value=0.0003  Score=64.90  Aligned_cols=80  Identities=15%  Similarity=0.207  Sum_probs=54.7

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE----eChhh----HHH----Hhhhc
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV----FTEEE----LRN----ISRDA  279 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v----~~~~d----~~~----i~~~t  279 (405)
                      ..+++|||.||+|++|.++++.+...|++|+.+.++.++.++..+.+++.+...+    .|-.+    ...    +.+. 
T Consensus        10 ~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~-   88 (311)
T 3o26_A           10 TKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTH-   88 (311)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHH-
T ss_pred             CCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHh-
Confidence            3578999999999999999999999999999999876655554555555443211    23222    222    2222 


Q ss_pred             CCCCCcEEEECCCc
Q psy2960         280 SIPKPKLALNCVGG  293 (405)
Q Consensus       280 ~g~g~Dvvld~~g~  293 (405)
                       .+++|++|++.|.
T Consensus        89 -~g~iD~lv~nAg~  101 (311)
T 3o26_A           89 -FGKLDILVNNAGV  101 (311)
T ss_dssp             -HSSCCEEEECCCC
T ss_pred             -CCCCCEEEECCcc
Confidence             2479999999984

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=97.61  E-value=0.0005  Score=63.12  Aligned_cols=101  Identities=17%  Similarity=0.252  Sum_probs=66.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcch-HHHHHHHHHcCCcEEe---Chhh---HHH----HhhhcCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDI-DKLKSYLKSLGADYVF---TEEE---LRN----ISRDASI  281 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~-~~~~~~~~~lg~~~v~---~~~d---~~~----i~~~t~g  281 (405)
                      .|+++||.||+|++|.+.++.+...|++|+++.++.+.. +...+...+.|....+   |-.|   ...    +.+.  .
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~--~  123 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQ--L  123 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH--c
Confidence            589999999999999999999999999999988765432 2233344455654332   3222   222    2222  2


Q ss_pred             CCCcEEEECCCch---------------------------hHHHHHHhcccCCEEEEEecc
Q psy2960         282 PKPKLALNCVGGN---------------------------SATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       282 ~g~Dvvld~~g~~---------------------------~~~~~~~~l~~~G~~v~~g~~  315 (405)
                      +++|+++++.|..                           ....++..++++|+|+.+++.
T Consensus       124 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~  184 (291)
T 3ijr_A          124 GSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASI  184 (291)
T ss_dssp             SSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCT
T ss_pred             CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEech
Confidence            4689999998731                           012234456678999999853

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.60  E-value=0.00039  Score=54.04  Aligned_cols=93  Identities=6%  Similarity=-0.009  Sum_probs=61.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcC-CcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEEEC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALNC  290 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G-~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld~  290 (405)
                      .+.+|+|.|+ |.+|..+++.+...| .+++++.++.    .+.+.+...+...+ .|..+...+.+..  .++|+||+|
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~----~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~d~vi~~   76 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDL----AALAVLNRMGVATKQVDAKDEAGLAKAL--GGFDAVISA   76 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCH----HHHHHHHTTTCEEEECCTTCHHHHHHHT--TTCSEEEEC
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCH----HHHHHHHhCCCcEEEecCCCHHHHHHHH--cCCCEEEEC
Confidence            4578999999 999999999999999 7777776543    33455555665543 3444333343332  378999999


Q ss_pred             CCchhHHHHHHh-cccCCEEEEE
Q psy2960         291 VGGNSATNLLRT-LVSKGVMVTY  312 (405)
Q Consensus       291 ~g~~~~~~~~~~-l~~~G~~v~~  312 (405)
                      ++........+. ...+-.++.+
T Consensus        77 ~~~~~~~~~~~~~~~~g~~~~~~   99 (118)
T 3ic5_A           77 APFFLTPIIAKAAKAAGAHYFDL   99 (118)
T ss_dssp             SCGGGHHHHHHHHHHTTCEEECC
T ss_pred             CCchhhHHHHHHHHHhCCCEEEe
Confidence            987665555444 4444454443

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=97.59  E-value=0.00043  Score=61.77  Aligned_cols=81  Identities=17%  Similarity=0.281  Sum_probs=52.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEec-CCcchHHHHHHHHHcCCcEE---eChhh---HHH-Hhhhc-CCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVR-NRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDA-SIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~-~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t-~g~g  283 (405)
                      .|+++||.||+|++|.+.++.+...|++|+++.+ +.++.++..+.+++.+....   .|-.|   ... +.+.. ..++
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFGQ   82 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4789999999999999999999999999999887 43333333344444454322   23222   222 22111 0246


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|+++++.|.
T Consensus        83 id~lv~nAg~   92 (246)
T 2uvd_A           83 VDILVNNAGV   92 (246)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999883

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=97.59  E-value=0.00032  Score=63.90  Aligned_cols=80  Identities=20%  Similarity=0.268  Sum_probs=53.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC-cEE----eChhh---HHH-Hhhhc-CCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA-DYV----FTEEE---LRN-ISRDA-SIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~-~~v----~~~~d---~~~-i~~~t-~g~  282 (405)
                      .|+++||.||+|++|.+.++.+...|++|+++.++.++.++..+.++..|. ..+    .|-.+   ... +.+.. ...
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  110 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS  110 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            578999999999999999999999999999998765544444444555542 111    23222   222 22111 124


Q ss_pred             CCcEEEECCC
Q psy2960         283 KPKLALNCVG  292 (405)
Q Consensus       283 g~Dvvld~~g  292 (405)
                      ++|++|++.|
T Consensus       111 ~iD~vi~~Ag  120 (279)
T 1xg5_A          111 GVDICINNAG  120 (279)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6999999987

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=97.58  E-value=0.0011  Score=63.45  Aligned_cols=101  Identities=14%  Similarity=0.173  Sum_probs=71.2

Q ss_pred             HHHHHHhhc-CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhc
Q psy2960         201 AYRMLKDYN-SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDA  279 (405)
Q Consensus       201 a~~al~~~~-~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t  279 (405)
                      .+.++.+.. ..-.|++|+|.|. |.+|..+++.++.+|++|+++-.+    +.+...+...|.. +.+   ++++    
T Consensus       206 ~~~gi~rat~~~L~GktV~ViG~-G~IGk~vA~~Lra~Ga~Viv~D~d----p~ra~~A~~~G~~-v~~---Leea----  272 (435)
T 3gvp_A          206 ILDGLKRTTDMMFGGKQVVVCGY-GEVGKGCCAALKAMGSIVYVTEID----PICALQACMDGFR-LVK---LNEV----  272 (435)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSC----HHHHHHHHHTTCE-ECC---HHHH----
T ss_pred             HHHHHHHhhCceecCCEEEEEee-CHHHHHHHHHHHHCCCEEEEEeCC----hhhhHHHHHcCCE-ecc---HHHH----
Confidence            445554433 3458999999999 999999999999999998876432    3334445566653 222   2221    


Q ss_pred             CCCCCcEEEECCCchhH--HHHHHhcccCCEEEEEecc
Q psy2960         280 SIPKPKLALNCVGGNSA--TNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       280 ~g~g~Dvvld~~g~~~~--~~~~~~l~~~G~~v~~g~~  315 (405)
                       -...|+|+.|.|...+  .+.++.|++++.++.+|..
T Consensus       273 -l~~ADIVi~atgt~~lI~~e~l~~MK~gailINvgrg  309 (435)
T 3gvp_A          273 -IRQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHS  309 (435)
T ss_dssp             -TTTCSEEEECSSCSCSBCHHHHHHSCTTEEEEECSST
T ss_pred             -HhcCCEEEECCCCcccCCHHHHHhcCCCcEEEEecCC
Confidence             1257999999886544  3678999999999998854

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=97.58  E-value=0.00035  Score=63.29  Aligned_cols=100  Identities=12%  Similarity=0.176  Sum_probs=65.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc-chHHHHHHHHHcCCcEEe---Chhh---HHH----HhhhcCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD-DIDKLKSYLKSLGADYVF---TEEE---LRN----ISRDASI  281 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~-~~~~~~~~~~~lg~~~v~---~~~d---~~~----i~~~t~g  281 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.+ ..++..+.++..|....+   |-.+   ...    +.+.  .
T Consensus        26 ~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~--~  103 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEA--F  103 (267)
T ss_dssp             -CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH--c
Confidence            5899999999999999999999899999998754433 333334445556654332   3222   222    2222  2


Q ss_pred             CCCcEEEECCCch--------------------------hHHHHHHhcccCCEEEEEec
Q psy2960         282 PKPKLALNCVGGN--------------------------SATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       282 ~g~Dvvld~~g~~--------------------------~~~~~~~~l~~~G~~v~~g~  314 (405)
                      +++|+++++.|..                          .+..++..++++|+++.++.
T Consensus       104 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS  162 (267)
T 3u5t_A          104 GGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMST  162 (267)
T ss_dssp             SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeC
Confidence            4789999999731                          01233455677899999985

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=97.58  E-value=0.0005  Score=62.71  Aligned_cols=81  Identities=19%  Similarity=0.211  Sum_probs=55.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC---cEE---eChhh---HHH-Hhhhc-CC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA---DYV---FTEEE---LRN-ISRDA-SI  281 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~---~~v---~~~~d---~~~-i~~~t-~g  281 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.+..++..+.+++.+.   ...   .|-.|   ... +.+.. ..
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   89 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAWH   89 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            578999999999999999999999999999988776555555555666554   221   13222   222 22111 12


Q ss_pred             CCCcEEEECCCc
Q psy2960         282 PKPKLALNCVGG  293 (405)
Q Consensus       282 ~g~Dvvld~~g~  293 (405)
                      +++|+++++.|.
T Consensus        90 g~id~lv~nAg~  101 (281)
T 3svt_A           90 GRLHGVVHCAGG  101 (281)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            468999999984

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=97.56  E-value=0.00069  Score=60.78  Aligned_cols=79  Identities=14%  Similarity=0.166  Sum_probs=52.4

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH-Hhhhc-CCCCCc
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDA-SIPKPK  285 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t-~g~g~D  285 (405)
                      ++++||.||+|++|.+.++.+...|++|+++.++.+..++..+.+...|....   .|-.|   ... +.+.. ..+++|
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   81 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD   81 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence            57899999999999999999999999999988765443333344444454322   23222   222 22111 124799


Q ss_pred             EEEECCC
Q psy2960         286 LALNCVG  292 (405)
Q Consensus       286 vvld~~g  292 (405)
                      +++++.|
T Consensus        82 ~lv~nAg   88 (256)
T 1geg_A           82 VIVNNAG   88 (256)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999987

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=97.56  E-value=0.00033  Score=63.13  Aligned_cols=80  Identities=18%  Similarity=0.270  Sum_probs=51.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc--CCc-EE--eChhh---HHH-HhhhcCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL--GAD-YV--FTEEE---LRN-ISRDASIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l--g~~-~v--~~~~d---~~~-i~~~t~g~g  283 (405)
                      .|+++||.|++|++|.+.++.+...|++|+++.++.++.++..+.+...  +.. .+  .|-.|   ... +.+.....+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLGG   85 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            5789999999999999999999999999999887654433333333322  312 12  23322   223 322222223


Q ss_pred             CcEEEECCC
Q psy2960         284 PKLALNCVG  292 (405)
Q Consensus       284 ~Dvvld~~g  292 (405)
                      +|+++++.|
T Consensus        86 id~lv~~Ag   94 (260)
T 2z1n_A           86 ADILVYSTG   94 (260)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999998

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.56  E-value=0.00064  Score=61.84  Aligned_cols=104  Identities=16%  Similarity=0.150  Sum_probs=64.8

Q ss_pred             HHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHcCC-cEE-eChhhHHHHhhhcC
Q psy2960         205 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGA-DYV-FTEEELRNISRDAS  280 (405)
Q Consensus       205 l~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~--G~~v~~~~~~~~~~~~~~~~~~~lg~-~~v-~~~~d~~~i~~~t~  280 (405)
                      +.....+++|++||-.|+ |. |..++.+++.+  +.+++++-.+++..+...+.+...|. +.+ +-..|+.+   ...
T Consensus       104 i~~~~~~~~~~~VLDiG~-G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~  178 (277)
T 1o54_A          104 IAMMLDVKEGDRIIDTGV-GS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISE---GFD  178 (277)
T ss_dssp             HHHHTTCCTTCEEEEECC-TT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGG---CCS
T ss_pred             HHHHhCCCCCCEEEEECC-cC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHH---ccc
Confidence            334468899999999998 44 89999999986  45666664333332223333344454 211 21222222   122


Q ss_pred             CCCCcEEEECCCc--hhHHHHHHhcccCCEEEEEe
Q psy2960         281 IPKPKLALNCVGG--NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       281 g~g~Dvvld~~g~--~~~~~~~~~l~~~G~~v~~g  313 (405)
                      ...+|+|+.....  ..+..+.+.|+++|+++...
T Consensus       179 ~~~~D~V~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (277)
T 1o54_A          179 EKDVDALFLDVPDPWNYIDKCWEALKGGGRFATVC  213 (277)
T ss_dssp             CCSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             CCccCEEEECCcCHHHHHHHHHHHcCCCCEEEEEe
Confidence            3469999976654  34566789999999998865

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=97.56  E-value=0.00028  Score=63.65  Aligned_cols=79  Identities=10%  Similarity=0.128  Sum_probs=52.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc-chHHHHHHHHHcCCcEE---eChhh---HHH----HhhhcCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD-DIDKLKSYLKSLGADYV---FTEEE---LRN----ISRDASI  281 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~-~~~~~~~~~~~lg~~~v---~~~~d---~~~----i~~~t~g  281 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.+..+ ..+...+.+.+.|....   .|-.|   ...    +.+.  .
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~--~   84 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADK--F   84 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHH--h
Confidence            5789999999999999999999999999998855433 22333444455554322   23222   222    2222  2


Q ss_pred             CCCcEEEECCCc
Q psy2960         282 PKPKLALNCVGG  293 (405)
Q Consensus       282 ~g~Dvvld~~g~  293 (405)
                      +++|+++++.|.
T Consensus        85 g~id~lv~nAg~   96 (259)
T 3edm_A           85 GEIHGLVHVAGG   96 (259)
T ss_dssp             CSEEEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            468999999873

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=97.55  E-value=0.00035  Score=63.61  Aligned_cols=81  Identities=11%  Similarity=0.086  Sum_probs=57.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Chh---hHHH-HhhhcCCCCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEE---ELRN-ISRDASIPKPK  285 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~---d~~~-i~~~t~g~g~D  285 (405)
                      .|+++||.||++++|.+.++.+...|++|+.+.++.+..++..+.+.+.|....+   |-.   +... +.+.....++|
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~iD  111 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIAPVD  111 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhCCCC
Confidence            5899999999999999999999999999999988877666655666666654332   322   2222 22221115799


Q ss_pred             EEEECCCc
Q psy2960         286 LALNCVGG  293 (405)
Q Consensus       286 vvld~~g~  293 (405)
                      +++++.|.
T Consensus       112 ~lvnnAg~  119 (275)
T 4imr_A          112 ILVINASA  119 (275)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999983

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=97.55  E-value=0.0002  Score=64.67  Aligned_cols=80  Identities=13%  Similarity=0.119  Sum_probs=52.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-cCCcEEEEecCCcchHHHHHHHHHcCCc-EE--eChhh---HHH-Hhhhc-CCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARH-WGLKTINIVRNRDDIDKLKSYLKSLGAD-YV--FTEEE---LRN-ISRDA-SIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~-~G~~v~~~~~~~~~~~~~~~~~~~lg~~-~v--~~~~d---~~~-i~~~t-~g~g  283 (405)
                      .+.+|||.||+|++|.+.++.+.. .|++|+.+.++.+..+...+.+...+.. .+  .|-.+   ... +.+.. ..++
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   82 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG   82 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            578999999999999999988888 8999999987655444444444444432 22  23222   222 22110 0236


Q ss_pred             CcEEEECCC
Q psy2960         284 PKLALNCVG  292 (405)
Q Consensus       284 ~Dvvld~~g  292 (405)
                      +|++|++.|
T Consensus        83 id~li~~Ag   91 (276)
T 1wma_A           83 LDVLVNNAG   91 (276)
T ss_dssp             EEEEEECCC
T ss_pred             CCEEEECCc
Confidence            899999987

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=97.55  E-value=0.00075  Score=61.16  Aligned_cols=80  Identities=18%  Similarity=0.211  Sum_probs=54.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t-~g~g~  284 (405)
                      .+.+|||.||+|++|.+.+..+...|++|+++.++.+..+...+.+++.|....   .|-.+   ... +.+.. ..+++
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i  109 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDV  109 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCCC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHCCCC
Confidence            578999999999999999999999999999988765544444444555554322   23222   222 22211 12479


Q ss_pred             cEEEECCC
Q psy2960         285 KLALNCVG  292 (405)
Q Consensus       285 Dvvld~~g  292 (405)
                      |++|++.|
T Consensus       110 D~li~~Ag  117 (272)
T 1yb1_A          110 SILVNNAG  117 (272)
T ss_dssp             SEEEECCC
T ss_pred             cEEEECCC
Confidence            99999997

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=97.54  E-value=0.00059  Score=62.79  Aligned_cols=79  Identities=10%  Similarity=0.110  Sum_probs=54.1

Q ss_pred             CCCEEEEeCCCc--HHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe--Chh---hHHH----HhhhcCC
Q psy2960         213 PGDVVIQNGANS--ACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEE---ELRN----ISRDASI  281 (405)
Q Consensus       213 ~g~~VLI~ga~G--~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~--~~~---d~~~----i~~~t~g  281 (405)
                      .|+++||.||+|  ++|.+.++.+...|++|+++.++.+..+...+...+.|....+  |-.   +...    +.+.  .
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~--~  106 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEE--W  106 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHH--c
Confidence            588999999987  9999999999999999999887754433334444555543333  322   2222    2222  2


Q ss_pred             CCCcEEEECCCc
Q psy2960         282 PKPKLALNCVGG  293 (405)
Q Consensus       282 ~g~Dvvld~~g~  293 (405)
                      +++|+++++.|.
T Consensus       107 g~iD~lVnnAG~  118 (296)
T 3k31_A          107 GSLDFVVHAVAF  118 (296)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            479999999974

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.54  E-value=0.00061  Score=62.64  Aligned_cols=92  Identities=16%  Similarity=0.196  Sum_probs=67.8

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECC
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                      -.|++|+|.|+ |.+|.++++.++.+|++|++..++.    .+.+.+.++|++. ++..++.++     -...|+|+.++
T Consensus       153 l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~dr~~----~~~~~~~~~g~~~-~~~~~l~~~-----l~~aDvVi~~~  221 (293)
T 3d4o_A          153 IHGANVAVLGL-GRVGMSVARKFAALGAKVKVGARES----DLLARIAEMGMEP-FHISKAAQE-----LRDVDVCINTI  221 (293)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSH----HHHHHHHHTTSEE-EEGGGHHHH-----TTTCSEEEECC
T ss_pred             CCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEECCH----HHHHHHHHCCCee-cChhhHHHH-----hcCCCEEEECC
Confidence            47899999998 9999999999999999888776443    2344455778753 333344331     13579999999


Q ss_pred             CchhH-HHHHHhcccCCEEEEEec
Q psy2960         292 GGNSA-TNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       292 g~~~~-~~~~~~l~~~G~~v~~g~  314 (405)
                      ....+ ...++.+++++.++.++.
T Consensus       222 p~~~i~~~~l~~mk~~~~lin~ar  245 (293)
T 3d4o_A          222 PALVVTANVLAEMPSHTFVIDLAS  245 (293)
T ss_dssp             SSCCBCHHHHHHSCTTCEEEECSS
T ss_pred             ChHHhCHHHHHhcCCCCEEEEecC
Confidence            76443 346788999999999884

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.54  E-value=0.00069  Score=61.79  Aligned_cols=103  Identities=15%  Similarity=0.156  Sum_probs=64.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecC------------CcchHHHHHHHHHcCCcEEe---Chhh---HHH
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN------------RDDIDKLKSYLKSLGADYVF---TEEE---LRN  274 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~------------~~~~~~~~~~~~~lg~~~v~---~~~d---~~~  274 (405)
                      .|++|||.||+|++|.+.++.+...|++|+.+.++            .+..++....+...+....+   |-.+   ...
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~   88 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVSR   88 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence            58899999999999999999999999999988765            22222223334445544332   3222   222


Q ss_pred             -Hhhhc-CCCCCcEEEECCCch---------h---------------HHHHHHhcccCCEEEEEecc
Q psy2960         275 -ISRDA-SIPKPKLALNCVGGN---------S---------------ATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       275 -i~~~t-~g~g~Dvvld~~g~~---------~---------------~~~~~~~l~~~G~~v~~g~~  315 (405)
                       +.+.. ..+++|+++++.|..         .               ...++..+.++|+++.++..
T Consensus        89 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~  155 (287)
T 3pxx_A           89 ELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSV  155 (287)
T ss_dssp             HHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCH
T ss_pred             HHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccc
Confidence             22111 124789999998841         0               11223445678999999863

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.52  E-value=0.00059  Score=60.32  Aligned_cols=96  Identities=19%  Similarity=0.267  Sum_probs=64.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC-cEEe-ChhhHHHHhhhcCCCCCcEEEEC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA-DYVF-TEEELRNISRDASIPKPKLALNC  290 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~-~~v~-~~~d~~~i~~~t~g~g~Dvvld~  290 (405)
                      .|.+|||.||+|++|...++.+...|++|++++++.++    .+.+...+. ..+. |-.  +.+.+..  .++|+||++
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~----~~~~~~~~~~~~~~~Dl~--~~~~~~~--~~~D~vi~~   91 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQ----GPELRERGASDIVVANLE--EDFSHAF--ASIDAVVFA   91 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGG----HHHHHHTTCSEEEECCTT--SCCGGGG--TTCSEEEEC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHH----HHHHHhCCCceEEEcccH--HHHHHHH--cCCCEEEEC
Confidence            57899999999999999999999999999999987654    333444565 4332 322  2244433  378999999


Q ss_pred             CCchh--------------HHHHHHhcc--cCCEEEEEeccC
Q psy2960         291 VGGNS--------------ATNLLRTLV--SKGVMVTYGGMS  316 (405)
Q Consensus       291 ~g~~~--------------~~~~~~~l~--~~G~~v~~g~~~  316 (405)
                      .|...              ....++.++  ..++|+.++...
T Consensus        92 ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~  133 (236)
T 3e8x_A           92 AGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVG  133 (236)
T ss_dssp             CCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTT
T ss_pred             CCCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCC
Confidence            98421              122333333  247999988643

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=97.50  E-value=0.00062  Score=61.35  Aligned_cols=79  Identities=19%  Similarity=0.238  Sum_probs=53.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH----HhhhcCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN----ISRDASIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~----i~~~t~g~  282 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.+..++..+.+++.|....   .|-.+   ...    +.+.  .+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~--~g   83 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRD--FG   83 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHH--HS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH--hC
Confidence            578999999999999999999999999999988765443333344444454322   23222   222    2222  24


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      ++|+++++.|.
T Consensus        84 ~id~lv~nAg~   94 (262)
T 1zem_A           84 KIDFLFNNAGY   94 (262)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68999999873

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=97.49  E-value=0.00079  Score=61.85  Aligned_cols=101  Identities=12%  Similarity=0.141  Sum_probs=66.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc--chHHHHHHHHHcCCcEEe---Chh---hHHH----HhhhcC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD--DIDKLKSYLKSLGADYVF---TEE---ELRN----ISRDAS  280 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~--~~~~~~~~~~~lg~~~v~---~~~---d~~~----i~~~t~  280 (405)
                      .|+++||.||+|++|.+.++.+...|++|+++.++.+  ..+...+...+.|....+   |-.   +...    +.+.  
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~--  125 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREA--  125 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHH--
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHH--
Confidence            5889999999999999999999999999988876532  222333444556654433   222   2222    2222  


Q ss_pred             CCCCcEEEECCCchh---------------------------HHHHHHhcccCCEEEEEecc
Q psy2960         281 IPKPKLALNCVGGNS---------------------------ATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       281 g~g~Dvvld~~g~~~---------------------------~~~~~~~l~~~G~~v~~g~~  315 (405)
                      .+++|+++++.|...                           ...++..+.++|+|+.++..
T Consensus       126 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~  187 (294)
T 3r3s_A          126 LGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSI  187 (294)
T ss_dssp             HTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCG
T ss_pred             cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCh
Confidence            247999999988310                           11233456678999999864

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=97.46  E-value=0.00039  Score=61.98  Aligned_cols=79  Identities=15%  Similarity=0.113  Sum_probs=58.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---ChhhHHHHhhhcCCCCCcEEEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEEELRNISRDASIPKPKLALN  289 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~d~~~i~~~t~g~g~Dvvld  289 (405)
                      .|+++||.|+++|+|.+.++.....|++|+.+.++.+  ++..+..++.|.+...   |-.|...+.+.....++|+++|
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iDiLVN   85 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP--DETLDIIAKDGGNASALLIDFADPLAAKDSFTDAGFDILVN   85 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTTCCCEEEE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence            5899999999999999999999999999998876543  3456667777765543   3233222333333457999999


Q ss_pred             CCCc
Q psy2960         290 CVGG  293 (405)
Q Consensus       290 ~~g~  293 (405)
                      +.|.
T Consensus        86 NAGi   89 (247)
T 4hp8_A           86 NAGI   89 (247)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            9983

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=97.46  E-value=0.0004  Score=62.83  Aligned_cols=81  Identities=14%  Similarity=0.199  Sum_probs=55.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Chh---hHHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEE---ELRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~---d~~~-i~~~t-~g~g~  284 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.+..++..+.+++.|....+   |-.   +... +.+.. ..+++
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   82 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGRI   82 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999999999999999987765555555555555654332   322   2222 22111 12469


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        83 D~lVnnAG~   91 (264)
T 3tfo_A           83 DVLVNNAGV   91 (264)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999973

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=97.46  E-value=0.00095  Score=61.30  Aligned_cols=104  Identities=12%  Similarity=0.086  Sum_probs=65.4

Q ss_pred             CCCCEEEEeCCCcH--HHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe--Chh---hHHH-Hhhhc-CCC
Q psy2960         212 SPGDVVIQNGANSA--CGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEE---ELRN-ISRDA-SIP  282 (405)
Q Consensus       212 ~~g~~VLI~ga~G~--vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~--~~~---d~~~-i~~~t-~g~  282 (405)
                      -.|+++||.||+|+  +|.+.++.+...|++|+.+.++.+..+...+...+.+.-..+  |-.   +... +.+.. ..+
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  108 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKWG  108 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcC
Confidence            36899999999955  999999999999999988876643222223333444532222  322   2222 22211 124


Q ss_pred             CCcEEEECCCchh------------------------------HHHHHHhcccCCEEEEEecc
Q psy2960         283 KPKLALNCVGGNS------------------------------ATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       283 g~Dvvld~~g~~~------------------------------~~~~~~~l~~~G~~v~~g~~  315 (405)
                      ++|+++++.|...                              ...++..++++|+|+.++..
T Consensus       109 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~  171 (293)
T 3grk_A          109 KLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYY  171 (293)
T ss_dssp             CCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECG
T ss_pred             CCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeeh
Confidence            7999999998421                              12234556678999999864

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=97.46  E-value=0.0002  Score=64.37  Aligned_cols=98  Identities=14%  Similarity=0.145  Sum_probs=64.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH----HhhhcCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN----ISRDASIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~----i~~~t~g~  282 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.+..   .+...+++....   .|-.|   ...    +.+.  .+
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~--~g   81 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNI---ARIREEFGPRVHALRSDIADLNEIAVLGAAAGQT--LG   81 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHH--HS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHH--hC
Confidence            689999999999999999999999999999988664432   233334443322   23222   222    2222  24


Q ss_pred             CCcEEEECCCchh--------------------------HHHHHHhcccCCEEEEEecc
Q psy2960         283 KPKLALNCVGGNS--------------------------ATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       283 g~Dvvld~~g~~~--------------------------~~~~~~~l~~~G~~v~~g~~  315 (405)
                      ++|+++++.|...                          ....+..++++|+|+.+++.
T Consensus        82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~  140 (255)
T 4eso_A           82 AIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSV  140 (255)
T ss_dssp             SEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCG
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECCh
Confidence            6899999987310                          11223455678999999864

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=97.45  E-value=0.00078  Score=59.89  Aligned_cols=81  Identities=15%  Similarity=0.204  Sum_probs=51.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEe-cCCcchHHHHHHHHHcCCcEE---eChhh---HHH-Hhhhc-CCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIV-RNRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDA-SIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~-~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t-~g~g  283 (405)
                      .|.+|||.|++|++|.+.++.+...|++|+++. ++.+..+...+.+++.+....   .|-.|   ... +.+.. ..++
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFGR   83 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            478999999999999999999999999999884 444433333444445554322   23222   222 22110 1247


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|++|++.|.
T Consensus        84 ~d~vi~~Ag~   93 (247)
T 2hq1_A           84 IDILVNNAGI   93 (247)
T ss_dssp             CCEEEECC--
T ss_pred             CCEEEECCCC
Confidence            9999999874

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=97.45  E-value=0.00077  Score=60.04  Aligned_cols=81  Identities=16%  Similarity=0.170  Sum_probs=56.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Chh---hHHH-Hhhh-cCCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEE---ELRN-ISRD-ASIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~---d~~~-i~~~-t~g~g~  284 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.+..++..+.+++.+....+   |-.   +... +.+. ....++
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLAI   83 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999999999999999988766555555555666654322   322   2222 2222 123579


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        84 d~li~~Ag~   92 (247)
T 3lyl_A           84 DILVNNAGI   92 (247)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999983

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=97.44  E-value=0.0015  Score=61.47  Aligned_cols=79  Identities=13%  Similarity=0.178  Sum_probs=55.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcc-------hHHHHHHHHHcCCcEEe---Chhh---HHH----H
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-------IDKLKSYLKSLGADYVF---TEEE---LRN----I  275 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~-------~~~~~~~~~~lg~~~v~---~~~d---~~~----i  275 (405)
                      .|++|||.||++++|.+.++.+...|++|+.+.++.++       .....+.+.+.|....+   |-.|   ...    +
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~  123 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVEKA  123 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHH
Confidence            58999999999999999999999999999999887653       22344555566654332   3322   222    2


Q ss_pred             hhhcCCCCCcEEEECCCc
Q psy2960         276 SRDASIPKPKLALNCVGG  293 (405)
Q Consensus       276 ~~~t~g~g~Dvvld~~g~  293 (405)
                      .+.  .+++|++|++.|.
T Consensus       124 ~~~--~g~iDilVnnAG~  139 (346)
T 3kvo_A          124 IKK--FGGIDILVNNASA  139 (346)
T ss_dssp             HHH--HSCCCEEEECCCC
T ss_pred             HHH--cCCCCEEEECCCC
Confidence            222  2479999999983

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=97.44  E-value=0.00069  Score=61.27  Aligned_cols=79  Identities=11%  Similarity=0.203  Sum_probs=54.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC-cEE----eChhh---HHHHhhhcCCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA-DYV----FTEEE---LRNISRDASIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~-~~v----~~~~d---~~~i~~~t~g~g~  284 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.+..++..+.+.+.+. ..+    .|-.+   ...+.+.  -+++
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~g~i   86 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEK--YPKV   86 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHH--CCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHh--cCCC
Confidence            578999999999999999999999999999998776554444444444321 111    23333   2232222  2479


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        87 d~lv~nAg~   95 (267)
T 3t4x_A           87 DILINNLGI   95 (267)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999983

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=97.44  E-value=0.00072  Score=60.99  Aligned_cols=81  Identities=9%  Similarity=0.116  Sum_probs=52.1

Q ss_pred             CCCEEEEeCCCcH--HHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc--EE--eC---hhhHHH-Hhhhc-CC
Q psy2960         213 PGDVVIQNGANSA--CGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YV--FT---EEELRN-ISRDA-SI  281 (405)
Q Consensus       213 ~g~~VLI~ga~G~--vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~--~v--~~---~~d~~~-i~~~t-~g  281 (405)
                      .|+++||.||+|+  +|.+.++.+...|++|+.+.++.+..+...+...+.+..  .+  .|   .++... +.+.. ..
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQV   85 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHHh
Confidence            5789999999955  999999999999999998887654333334444455441  12  23   222332 22211 12


Q ss_pred             CCCcEEEECCCc
Q psy2960         282 PKPKLALNCVGG  293 (405)
Q Consensus       282 ~g~Dvvld~~g~  293 (405)
                      +.+|+++++.|.
T Consensus        86 g~id~li~~Ag~   97 (266)
T 3oig_A           86 GVIHGIAHCIAF   97 (266)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCeeEEEEcccc
Confidence            468999999873

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=97.43  E-value=0.00072  Score=60.71  Aligned_cols=80  Identities=18%  Similarity=0.253  Sum_probs=51.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEec-CCcchHHHHHHHHHcCCcEE---eChhh---HHH-Hhhhc-CCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVR-NRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDA-SIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~-~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t-~g~g  283 (405)
                      .|.+|||.||+|++|.+.++.+...|++|+++.+ +.+..++..+.+++.+....   .|-.+   ... +.+.. ..++
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   85 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFGK   85 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            4789999999999999999999899999999887 43333333344444454322   23222   222 22111 0236


Q ss_pred             CcEEEECCC
Q psy2960         284 PKLALNCVG  292 (405)
Q Consensus       284 ~Dvvld~~g  292 (405)
                      +|++|++.|
T Consensus        86 id~li~~Ag   94 (261)
T 1gee_A           86 LDVMINNAG   94 (261)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899999987

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=97.43  E-value=0.00057  Score=62.20  Aligned_cols=79  Identities=15%  Similarity=0.265  Sum_probs=57.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH----HhhhcCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN----ISRDASIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~----i~~~t~g~  282 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.+..++..+.+.+.|....   .|-.|   ...    +.+.  .+
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~--~g  108 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGE--LG  108 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH--HS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH--cC
Confidence            579999999999999999999999999999999887766665666666654322   23222   222    2222  24


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      ++|+++++.|.
T Consensus       109 ~iD~lvnnAg~  119 (276)
T 3r1i_A          109 GIDIAVCNAGI  119 (276)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999983

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=97.42  E-value=0.00099  Score=60.72  Aligned_cols=80  Identities=15%  Similarity=0.202  Sum_probs=53.6

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEec-CCcchHHHHHHHHHcCCcEEe---Chh---hHHH----HhhhcC
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVR-NRDDIDKLKSYLKSLGADYVF---TEE---ELRN----ISRDAS  280 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~-~~~~~~~~~~~~~~lg~~~v~---~~~---d~~~----i~~~t~  280 (405)
                      ..|+++||.||+|++|.+.++.+...|++|+++.+ +.+..++..+.+...|....+   |-.   +...    +.+.  
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~--  104 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAE--  104 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHH--
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH--
Confidence            36889999999999999999999999999998875 333333344445555654322   322   2222    2222  


Q ss_pred             CCCCcEEEECCCc
Q psy2960         281 IPKPKLALNCVGG  293 (405)
Q Consensus       281 g~g~Dvvld~~g~  293 (405)
                      .+++|+++++.|.
T Consensus       105 ~g~iD~lvnnAg~  117 (280)
T 4da9_A          105 FGRIDCLVNNAGI  117 (280)
T ss_dssp             HSCCCEEEEECC-
T ss_pred             cCCCCEEEECCCc
Confidence            2468999999985

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=97.42  E-value=0.00056  Score=61.31  Aligned_cols=80  Identities=15%  Similarity=0.204  Sum_probs=53.8

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEe-cCCcchHHHHHHHHHcCCcEEe---Chh---hHHH----Hhhhc
Q psy2960         211 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIV-RNRDDIDKLKSYLKSLGADYVF---TEE---ELRN----ISRDA  279 (405)
Q Consensus       211 ~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~-~~~~~~~~~~~~~~~lg~~~v~---~~~---d~~~----i~~~t  279 (405)
                      -.++++|||.||+|++|.+.+..+...|++|+++. ++.+......+..++.+.+..+   |-.   +...    +.+. 
T Consensus        10 ~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-   88 (256)
T 3ezl_A           10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAE-   88 (256)
T ss_dssp             ---CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHh-
Confidence            35789999999999999999999999999999887 4444444455556666653222   322   2222    2222 


Q ss_pred             CCCCCcEEEECCC
Q psy2960         280 SIPKPKLALNCVG  292 (405)
Q Consensus       280 ~g~g~Dvvld~~g  292 (405)
                       .+++|+++++.|
T Consensus        89 -~g~id~lv~~Ag  100 (256)
T 3ezl_A           89 -VGEIDVLVNNAG  100 (256)
T ss_dssp             -TCCEEEEEECCC
T ss_pred             -cCCCCEEEECCC
Confidence             347899999987

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=97.42  E-value=0.00044  Score=62.52  Aligned_cols=80  Identities=16%  Similarity=0.236  Sum_probs=52.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEec-CCcchHHHHHHHHHcCCcEE---eChhh---HHH-Hhhhc-CCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVR-NRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDA-SIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~-~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t-~g~g  283 (405)
                      .|.+|||.||+|++|.+.++.+...|++|+++.+ +.+..+...+.+++.|....   .|-.|   ... +.+.. ...+
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   99 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFGG   99 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999999887 43333333344445565422   23222   222 22110 1236


Q ss_pred             CcEEEECCC
Q psy2960         284 PKLALNCVG  292 (405)
Q Consensus       284 ~Dvvld~~g  292 (405)
                      +|++|++.|
T Consensus       100 ~d~vi~~Ag  108 (274)
T 1ja9_A          100 LDFVMSNSG  108 (274)
T ss_dssp             EEEEECCCC
T ss_pred             CCEEEECCC
Confidence            899999987

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.40  E-value=0.00036  Score=57.57  Aligned_cols=98  Identities=10%  Similarity=0.134  Sum_probs=62.1

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHH-HcCCcEEe-ChhhHHHHhhhcCCCCCcE
Q psy2960         209 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGADYVF-TEEELRNISRDASIPKPKL  286 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~-~lg~~~v~-~~~d~~~i~~~t~g~g~Dv  286 (405)
                      ....++++|+|.|+ |.+|..+++.++..|.+|+++.++.+.    .+.++ ..|...+. +..+...+.+ .+..++|+
T Consensus        14 ~~~~~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~----~~~~~~~~g~~~~~~d~~~~~~l~~-~~~~~ad~   87 (155)
T 2g1u_A           14 SKKQKSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYA----FHRLNSEFSGFTVVGDAAEFETLKE-CGMEKADM   87 (155)
T ss_dssp             ---CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGG----GGGSCTTCCSEEEESCTTSHHHHHT-TTGGGCSE
T ss_pred             hcccCCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHH----HHHHHhcCCCcEEEecCCCHHHHHH-cCcccCCE
Confidence            34567899999998 999999999999999998888765443    34444 56665443 3333222322 12346899


Q ss_pred             EEECCCchhHHH-HHHhccc-CC--EEEEE
Q psy2960         287 ALNCVGGNSATN-LLRTLVS-KG--VMVTY  312 (405)
Q Consensus       287 vld~~g~~~~~~-~~~~l~~-~G--~~v~~  312 (405)
                      ||.|++...... ....+++ +|  +++..
T Consensus        88 Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~  117 (155)
T 2g1u_A           88 VFAFTNDDSTNFFISMNARYMFNVENVIAR  117 (155)
T ss_dssp             EEECSSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred             EEEEeCCcHHHHHHHHHHHHHCCCCeEEEE
Confidence            999999866543 3344443 34  44443

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=97.40  E-value=0.00059  Score=61.96  Aligned_cols=80  Identities=14%  Similarity=0.188  Sum_probs=54.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH-H---hhhcCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN-I---SRDASIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i---~~~t~g~  282 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.+..++..+.+++.|....   .|-.+   ... +   .+.. ++
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~g   98 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVF-DG   98 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT-TS
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHc-CC
Confidence            578999999999999999999999999999988765543333444444454322   23222   222 2   2221 15


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      ++|+++++.|.
T Consensus        99 ~id~lv~nAg~  109 (273)
T 1ae1_A           99 KLNILVNNAGV  109 (273)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCcEEEECCCC
Confidence            79999999874

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=97.40  E-value=0.00056  Score=61.54  Aligned_cols=80  Identities=15%  Similarity=0.220  Sum_probs=53.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH-HhhhcC--CCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDAS--IPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t~--g~g  283 (405)
                      .|+++||.||+|++|.+.++.+...|++|+++.++.+..+...+.+++.|....   .|-.+   ... +.+...  +++
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~   87 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGK   87 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTTC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            578999999999999999999999999999988765443333344444454322   23222   222 222111  147


Q ss_pred             CcEEEECCC
Q psy2960         284 PKLALNCVG  292 (405)
Q Consensus       284 ~Dvvld~~g  292 (405)
                      +|+++++.|
T Consensus        88 id~lv~~Ag   96 (260)
T 2ae2_A           88 LNILVNNAG   96 (260)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999998

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=97.39  E-value=0.0012  Score=59.15  Aligned_cols=78  Identities=13%  Similarity=0.162  Sum_probs=52.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-e--Chhh---HHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-F--TEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~--~~~d---~~~-i~~~t-~g~g~  284 (405)
                      .|+++||.||+|++|.+.++.+...|++|+++.++.+  +...+.+.+.|.... +  |-.|   ... +.+.. ..+++
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   80 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP--APALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFGGV   80 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC--HHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999999999999998877654  333444444454322 2  3222   222 22110 02368


Q ss_pred             cEEEECCC
Q psy2960         285 KLALNCVG  292 (405)
Q Consensus       285 Dvvld~~g  292 (405)
                      |+++++.|
T Consensus        81 d~lv~~Ag   88 (255)
T 2q2v_A           81 DILVNNAG   88 (255)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999987

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=97.39  E-value=0.0019  Score=60.52  Aligned_cols=79  Identities=10%  Similarity=0.017  Sum_probs=56.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc-------CCcEE-eChhhHHHHhhhcCCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-------GADYV-FTEEELRNISRDASIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l-------g~~~v-~~~~d~~~i~~~t~g~g~  284 (405)
                      .+.+|||.||+|.+|...++.+...|.+|++++++........+.+...       +...+ .|..|.+.+.+..  .++
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--~~~  101 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVM--KGV  101 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHT--TTC
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHh--cCC
Confidence            4689999999999999999999999999999998765544445555443       22222 2444433344443  279


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+||.+.+.
T Consensus       102 d~Vih~A~~  110 (351)
T 3ruf_A          102 DHVLHQAAL  110 (351)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCcc
Confidence            999999984

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=97.39  E-value=0.00056  Score=62.10  Aligned_cols=81  Identities=12%  Similarity=0.130  Sum_probs=56.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Chh---hHHH-Hhhh-cCCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEE---ELRN-ISRD-ASIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~---d~~~-i~~~-t~g~g~  284 (405)
                      .|+++||.||+|++|.+.++.+...|++|+++.++.+..++..+.+++.|....+   |-.   +... +.+. ...+++
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  104 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGIDV  104 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCCCC
Confidence            5899999999999999999999999999988877655545555555666654333   322   2222 2221 113469


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus       105 D~lv~nAg~  113 (271)
T 4ibo_A          105 DILVNNAGI  113 (271)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999983

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=97.38  E-value=0.00059  Score=62.94  Aligned_cols=80  Identities=11%  Similarity=0.131  Sum_probs=55.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t-~g~g~  284 (405)
                      .|++|||.||+|++|.+.+..+...|++|+.+.++.+..++..+.+++.+....   .|-.|   ... +.+.. ..+++
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  109 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGGV  109 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCCCC
Confidence            688999999999999999999999999999998776655555555555555432   23222   222 22111 12479


Q ss_pred             cEEEECCC
Q psy2960         285 KLALNCVG  292 (405)
Q Consensus       285 Dvvld~~g  292 (405)
                      |++|++.|
T Consensus       110 d~lvnnAg  117 (301)
T 3tjr_A          110 DVVFSNAG  117 (301)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999998

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.38  E-value=0.00077  Score=60.85  Aligned_cols=82  Identities=11%  Similarity=0.189  Sum_probs=56.7

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Chhh---HHH-Hhhhc-CCCC
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEEE---LRN-ISRDA-SIPK  283 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~d---~~~-i~~~t-~g~g  283 (405)
                      -.|+++||.|+++++|.+.++.+...|++|+.+.++.+..++..+.+.+.|....+   |-.|   ... +.+.. ..++
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   88 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGR   88 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            36899999999999999999999999999999987765555555555555654332   3222   222 22211 1347


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|+++++.|.
T Consensus        89 id~lv~nAg~   98 (264)
T 3ucx_A           89 VDVVINNAFR   98 (264)
T ss_dssp             CSEEEECCCS
T ss_pred             CcEEEECCCC
Confidence            9999999864

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=97.38  E-value=0.00058  Score=61.35  Aligned_cols=79  Identities=14%  Similarity=0.194  Sum_probs=55.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Chhh---HHH----HhhhcCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEEE---LRN----ISRDASIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~d---~~~----i~~~t~g~  282 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.+..++..+.+++.|....+   |-.|   ...    +.+.  .+
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~--~g   88 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQ--FG   88 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH--HS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH--cC
Confidence            5789999999999999999998899999999887765545555555566654332   3222   222    2222  24


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      ++|+++++.|.
T Consensus        89 ~id~lv~nAg~   99 (256)
T 3gaf_A           89 KITVLVNNAGG   99 (256)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            78999999874

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=97.38  E-value=0.001  Score=60.73  Aligned_cols=81  Identities=17%  Similarity=0.224  Sum_probs=52.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t-~g~g~  284 (405)
                      .|.+|||.||+|++|.+.++.+...|++|+++.++.+..+...+.+++.+....   .|-.|   ... +.+.. ..+++
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~i  122 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNV  122 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            478999999999999999999988999999876554443333344444454422   23222   222 22211 13479


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |++|++.|.
T Consensus       123 d~li~~Ag~  131 (285)
T 2c07_A          123 DILVNNAGI  131 (285)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=97.38  E-value=0.00041  Score=62.47  Aligned_cols=78  Identities=9%  Similarity=0.082  Sum_probs=51.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChh---hHHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEE---ELRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~---d~~~-i~~~t-~g~g~  284 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.+.   ..+...+++....   .|-.   +... +.+.. ..+++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   83 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGATVAIADIDIER---ARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEHAGGL   83 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHSSSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence            57899999999999999999999999999988765433   2333445554322   2322   2222 22111 13479


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        84 d~lv~~Ag~   92 (259)
T 4e6p_A           84 DILVNNAAL   92 (259)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999984

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.38  E-value=0.00071  Score=62.41  Aligned_cols=92  Identities=14%  Similarity=0.229  Sum_probs=67.6

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECC
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                      -.|++|+|.|+ |.+|.++++.++.+|++|++..++.    .+.+.+.++|.. +++..++.+   .  -.+.|+|+.++
T Consensus       155 l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~d~~~----~~~~~~~~~g~~-~~~~~~l~~---~--l~~aDvVi~~~  223 (300)
T 2rir_A          155 IHGSQVAVLGL-GRTGMTIARTFAALGANVKVGARSS----AHLARITEMGLV-PFHTDELKE---H--VKDIDICINTI  223 (300)
T ss_dssp             STTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSH----HHHHHHHHTTCE-EEEGGGHHH---H--STTCSEEEECC
T ss_pred             CCCCEEEEEcc-cHHHHHHHHHHHHCCCEEEEEECCH----HHHHHHHHCCCe-EEchhhHHH---H--hhCCCEEEECC
Confidence            47899999998 9999999999999999888876543    233444567764 333334333   2  13579999999


Q ss_pred             CchhH-HHHHHhcccCCEEEEEec
Q psy2960         292 GGNSA-TNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       292 g~~~~-~~~~~~l~~~G~~v~~g~  314 (405)
                      +...+ ...++.+++++.++.++.
T Consensus       224 p~~~i~~~~~~~mk~g~~lin~a~  247 (300)
T 2rir_A          224 PSMILNQTVLSSMTPKTLILDLAS  247 (300)
T ss_dssp             SSCCBCHHHHTTSCTTCEEEECSS
T ss_pred             ChhhhCHHHHHhCCCCCEEEEEeC
Confidence            86444 346788999999999884

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=97.37  E-value=0.0008  Score=60.76  Aligned_cols=81  Identities=17%  Similarity=0.174  Sum_probs=50.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc--CCcE-E--eChhh---HHH-Hhhhc-CCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL--GADY-V--FTEEE---LRN-ISRDA-SIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l--g~~~-v--~~~~d---~~~-i~~~t-~g~  282 (405)
                      .|+++||.||+|++|.+.++.+...|++|+++.++.+..++..+.+.+.  +... .  .|-.|   ... +.+.. ..+
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   85 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999999999999999999887644322222222221  2111 1  23222   222 22110 124


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      ++|+++++.|.
T Consensus        86 ~id~lv~~Ag~   96 (267)
T 2gdz_A           86 RLDILVNNAGV   96 (267)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68999999983

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=97.37  E-value=0.0016  Score=59.52  Aligned_cols=80  Identities=13%  Similarity=0.113  Sum_probs=52.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC-cchHHHHHHHH-HcCCcEE---eCh-------hhHHH-Hhhhc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR-DDIDKLKSYLK-SLGADYV---FTE-------EELRN-ISRDA  279 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~-~~~~~~~~~~~-~lg~~~v---~~~-------~d~~~-i~~~t  279 (405)
                      .|.++||.||+|++|.+.++.+...|++|+.+.++. +..++..+.+. +.|....   .|-       ++... +.+..
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~~~  101 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSCF  101 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHHHH
Confidence            478999999999999999999999999999998775 44333333333 3443322   132       22222 22111


Q ss_pred             -CCCCCcEEEECCC
Q psy2960         280 -SIPKPKLALNCVG  292 (405)
Q Consensus       280 -~g~g~Dvvld~~g  292 (405)
                       ..+++|++|++.|
T Consensus       102 ~~~g~iD~lvnnAG  115 (288)
T 2x9g_A          102 RAFGRCDVLVNNAS  115 (288)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HhcCCCCEEEECCC
Confidence             1247999999987

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=97.36  E-value=0.00058  Score=62.22  Aligned_cols=82  Identities=15%  Similarity=0.193  Sum_probs=54.4

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Chhh---HHH-Hhhhc-CCCC
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEEE---LRN-ISRDA-SIPK  283 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~d---~~~-i~~~t-~g~g  283 (405)
                      ..|+++||.||+|++|.+.+..+...|++|+.+.++.+..++..+.+++.|.+..+   |-.|   ... +.+.. ..++
T Consensus        22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  101 (279)
T 3sju_A           22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFGP  101 (279)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            46889999999999999999999999999999987765545445555555654322   3222   222 22111 1247


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|+++++.|.
T Consensus       102 id~lv~nAg~  111 (279)
T 3sju_A          102 IGILVNSAGR  111 (279)
T ss_dssp             CCEEEECCCC
T ss_pred             CcEEEECCCC
Confidence            8999999983

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=97.35  E-value=0.00093  Score=60.78  Aligned_cols=80  Identities=15%  Similarity=0.229  Sum_probs=53.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t-~g~g~  284 (405)
                      .|+++||.||+|++|.+.++.+...|++|+++.++.+..++..+.+++.|....   .|-.+   ... +.+.. ..+++
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i  100 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPV  100 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            578999999999999999999999999999988775543333444444454322   23222   222 22111 12469


Q ss_pred             cEEEECCC
Q psy2960         285 KLALNCVG  292 (405)
Q Consensus       285 Dvvld~~g  292 (405)
                      |+++++.|
T Consensus       101 D~lv~~Ag  108 (277)
T 2rhc_B          101 DVLVNNAG  108 (277)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999987

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=97.35  E-value=0.0012  Score=58.46  Aligned_cols=79  Identities=14%  Similarity=0.228  Sum_probs=50.0

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEE-ecCCcchHHHHHHHHHcCCcEE---eChhh---HHH-Hhhhc-CCCCC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINI-VRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~-~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t-~g~g~  284 (405)
                      |++|||.||+|++|.+.++.+...|++|+++ .++.+..+...+.+++.+....   .|-.+   ... +.+.. ..+++
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   80 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTI   80 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999999999999999999999999986 4443332333333444454322   23222   222 22211 12478


Q ss_pred             cEEEECCC
Q psy2960         285 KLALNCVG  292 (405)
Q Consensus       285 Dvvld~~g  292 (405)
                      |++|++.|
T Consensus        81 d~li~~Ag   88 (244)
T 1edo_A           81 DVVVNNAG   88 (244)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999987

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=97.34  E-value=0.00046  Score=62.06  Aligned_cols=78  Identities=14%  Similarity=0.282  Sum_probs=53.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChh---hHHH----HhhhcCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEE---ELRN----ISRDASIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~---d~~~----i~~~t~g~  282 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.+..++..+.+.+.+....   .|-.   +...    +.+.  .+
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~--~g   82 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEK--FG   82 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHH--HS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH--cC
Confidence            578999999999999999999999999999988765544443344434444322   2322   2222    2222  24


Q ss_pred             CCcEEEECCC
Q psy2960         283 KPKLALNCVG  292 (405)
Q Consensus       283 g~Dvvld~~g  292 (405)
                      ++|+++++.|
T Consensus        83 ~id~lv~nAg   92 (257)
T 3imf_A           83 RIDILINNAA   92 (257)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899999998

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=97.34  E-value=0.00058  Score=60.61  Aligned_cols=79  Identities=14%  Similarity=0.129  Sum_probs=49.9

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEE-ecCCcchHHHHHHHHHcCCcE-E---eChhh---HHH-Hhhhc-CCCC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINI-VRNRDDIDKLKSYLKSLGADY-V---FTEEE---LRN-ISRDA-SIPK  283 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~-~~~~~~~~~~~~~~~~lg~~~-v---~~~~d---~~~-i~~~t-~g~g  283 (405)
                      +++|||.||+|++|.+.++.+...|++|+++ .++.+..++..+.++..+... .   .|-.+   ... +.+.. ...+
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLGG   80 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcCC
Confidence            4689999999999999999999999999988 444333333333344445432 1   24322   222 22110 0246


Q ss_pred             CcEEEECCC
Q psy2960         284 PKLALNCVG  292 (405)
Q Consensus       284 ~Dvvld~~g  292 (405)
                      +|++|++.|
T Consensus        81 ~d~li~~Ag   89 (245)
T 2ph3_A           81 LDTLVNNAG   89 (245)
T ss_dssp             CCEEEECCC
T ss_pred             CCEEEECCC
Confidence            899999987

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=97.34  E-value=0.00063  Score=61.00  Aligned_cols=76  Identities=9%  Similarity=0.000  Sum_probs=52.3

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE-EeChhhHHH----HhhhcCCCCCcEEEE
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-VFTEEELRN----ISRDASIPKPKLALN  289 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v~~~~d~~~----i~~~t~g~g~Dvvld  289 (405)
                      +++||.||+|++|.+.++.+...|++|+.+.++.++.+...+ +.+.|.+. .++.++...    +.+.  .+++|++++
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-l~~~~~~~~~~d~~~v~~~~~~~~~~--~g~iD~lv~   78 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA-FAETYPQLKPMSEQEPAELIEAVTSA--YGQVDVLVS   78 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH-HHHHCTTSEECCCCSHHHHHHHHHHH--HSCCCEEEE
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHhcCCcEEEECHHHHHHHHHHHHHH--hCCCCEEEE
Confidence            479999999999999999999999999998877655443333 44445432 235444333    2222  247999999


Q ss_pred             CCCc
Q psy2960         290 CVGG  293 (405)
Q Consensus       290 ~~g~  293 (405)
                      +.|.
T Consensus        79 nAg~   82 (254)
T 1zmt_A           79 NDIF   82 (254)
T ss_dssp             ECCC
T ss_pred             CCCc
Confidence            9874

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=97.34  E-value=0.00088  Score=59.15  Aligned_cols=79  Identities=14%  Similarity=0.209  Sum_probs=53.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHH-HcCCcEEe---Chhh---HHH----HhhhcCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGADYVF---TEEE---LRN----ISRDASI  281 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~-~lg~~~v~---~~~d---~~~----i~~~t~g  281 (405)
                      .++++||.||+|++|.+.++.+...|++|+.+.++.++.++..+.+. ..+....+   |-.+   ...    +.+.  .
T Consensus         1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~--~   78 (235)
T 3l77_A            1 EMKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLER--F   78 (235)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHH--H
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHh--c
Confidence            36789999999999999999999999999999877654443333332 34544322   3322   222    2222  2


Q ss_pred             CCCcEEEECCCc
Q psy2960         282 PKPKLALNCVGG  293 (405)
Q Consensus       282 ~g~Dvvld~~g~  293 (405)
                      +++|+++++.|.
T Consensus        79 g~id~li~~Ag~   90 (235)
T 3l77_A           79 GDVDVVVANAGL   90 (235)
T ss_dssp             SSCSEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            369999999873

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=97.33  E-value=0.0014  Score=58.55  Aligned_cols=78  Identities=9%  Similarity=0.115  Sum_probs=51.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC-cchHHHHHHHHHcCCcEE---eChhh---HHH-Hhhhc-CCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR-DDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDA-SIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~-~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t-~g~g  283 (405)
                      .|+++||.||+|++|.+.++.+...|++|+++.++. +..+   +.+++.|....   .|-.|   ... +.+.. ..++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~---~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAE---AAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGR   82 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHH---HHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHH---HHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            578999999999999999999999999999988765 3222   23445554322   23222   222 22111 0247


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|+++++.|.
T Consensus        83 id~lv~nAg~   92 (249)
T 2ew8_A           83 CDILVNNAGI   92 (249)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999873

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=97.33  E-value=0.0016  Score=58.79  Aligned_cols=78  Identities=17%  Similarity=0.205  Sum_probs=52.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Chhh---HHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~d---~~~-i~~~t-~g~g~  284 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.++   ..+...+++....+   |-.|   ... +.+.. ..+++
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  102 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDK---LKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGI  102 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHHHHTSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHHHcCCC
Confidence            58999999999999999999999999999988765433   23334556654332   3222   222 21111 12479


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus       103 D~lvnnAg~  111 (266)
T 3grp_A          103 DILVNNAGI  111 (266)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=97.33  E-value=0.0008  Score=60.52  Aligned_cols=80  Identities=18%  Similarity=0.217  Sum_probs=53.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH-HhhhcC--CCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDAS--IPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t~--g~g  283 (405)
                      .|+++||.||+|++|.+.++.+...|++|+++.++.+..+...+.++..|....   .|-.|   ... +.+...  .+.
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g~   83 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQGR   83 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            478999999999999999999999999999988765443333344444454322   23222   223 322211  346


Q ss_pred             CcEEEECCC
Q psy2960         284 PKLALNCVG  292 (405)
Q Consensus       284 ~Dvvld~~g  292 (405)
                      +|+++++.|
T Consensus        84 id~lvnnAg   92 (260)
T 2qq5_A           84 LDVLVNNAY   92 (260)
T ss_dssp             CCEEEECCC
T ss_pred             ceEEEECCc
Confidence            899999994

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=97.32  E-value=0.00078  Score=60.25  Aligned_cols=79  Identities=11%  Similarity=0.089  Sum_probs=55.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Chhh---HHH----HhhhcCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEEE---LRN----ISRDASIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~d---~~~----i~~~t~g~  282 (405)
                      .|++|||.||+|++|.+.++.+...|++|+.+.++.+..++..+.+++.+....+   |-.|   ...    +.+.  .+
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~--~g   85 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAE--FG   85 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH--HS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH--cC
Confidence            5789999999999999999999999999999887765544444555555543222   3222   222    2222  24


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      ++|+++++.|.
T Consensus        86 ~id~li~~Ag~   96 (253)
T 3qiv_A           86 GIDYLVNNAAI   96 (253)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            79999999874

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=97.32  E-value=0.00087  Score=59.83  Aligned_cols=80  Identities=18%  Similarity=0.268  Sum_probs=53.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t-~g~g~  284 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.+..++..+.+++.|....   .|-.|   ... +.+.. ..+++
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i   85 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALGGL   85 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            478999999999999999999999999999988765543333344444454322   23222   222 22111 12469


Q ss_pred             cEEEECCC
Q psy2960         285 KLALNCVG  292 (405)
Q Consensus       285 Dvvld~~g  292 (405)
                      |+++++.|
T Consensus        86 d~lv~nAg   93 (247)
T 2jah_A           86 DILVNNAG   93 (247)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999987

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=97.32  E-value=0.00088  Score=60.40  Aligned_cols=78  Identities=21%  Similarity=0.274  Sum_probs=51.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcc---hHHHHHHHHHcCCcEEe---Chh---hHHH----Hhhhc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD---IDKLKSYLKSLGADYVF---TEE---ELRN----ISRDA  279 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~---~~~~~~~~~~lg~~~v~---~~~---d~~~----i~~~t  279 (405)
                      .|+++||.||++++|.+.++.+...|++|+.+.++...   .++..+.+++.|....+   |-.   +...    +.+. 
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~-   88 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKE-   88 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH-
Confidence            57899999999999999999999999999988654322   12223333444543222   322   2222    2222 


Q ss_pred             CCCCCcEEEECCC
Q psy2960         280 SIPKPKLALNCVG  292 (405)
Q Consensus       280 ~g~g~Dvvld~~g  292 (405)
                       .+++|+++++.|
T Consensus        89 -~g~iD~lvnnAg  100 (262)
T 3ksu_A           89 -FGKVDIAINTVG  100 (262)
T ss_dssp             -HCSEEEEEECCC
T ss_pred             -cCCCCEEEECCC
Confidence             246899999998

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.30  E-value=0.00062  Score=61.40  Aligned_cols=78  Identities=17%  Similarity=0.251  Sum_probs=54.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC-cEE-e--Chhh---HHH----HhhhcCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA-DYV-F--TEEE---LRN----ISRDASI  281 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~-~~v-~--~~~d---~~~----i~~~t~g  281 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.++.++..+.+.+.+. ... +  |-.|   ...    +.+.  .
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~--~   86 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEE--F   86 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHH--h
Confidence            578999999999999999999999999999998776554444555555552 221 1  3222   222    2222  2


Q ss_pred             CCCcEEEECCC
Q psy2960         282 PKPKLALNCVG  292 (405)
Q Consensus       282 ~g~Dvvld~~g  292 (405)
                      +++|+++++.|
T Consensus        87 g~id~lvnnAg   97 (262)
T 3pk0_A           87 GGIDVVCANAG   97 (262)
T ss_dssp             SCCSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            47999999998

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=97.30  E-value=0.00054  Score=61.12  Aligned_cols=80  Identities=19%  Similarity=0.214  Sum_probs=52.4

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---ChhhHHHHhhhc-CCCCCcE
Q psy2960         211 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEEELRNISRDA-SIPKPKL  286 (405)
Q Consensus       211 ~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~d~~~i~~~t-~g~g~Dv  286 (405)
                      -.++++|||.||+|++|.+.++.+...|++|+.+.++.+..   .+...++.....+   |-.+.+.+.+.. .-.++|+
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~   87 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKL---KSLGNALKDNYTIEVCNLANKEECSNLISKTSNLDI   87 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHHHCSSEEEEECCTTSHHHHHHHHHTCSCCSE
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHH---HHHHHHhccCccEEEcCCCCHHHHHHHHHhcCCCCE
Confidence            35789999999999999999999999999999988664432   2233344433222   333322221111 1246999


Q ss_pred             EEECCCc
Q psy2960         287 ALNCVGG  293 (405)
Q Consensus       287 vld~~g~  293 (405)
                      ++++.|.
T Consensus        88 li~~Ag~   94 (249)
T 3f9i_A           88 LVCNAGI   94 (249)
T ss_dssp             EEECCC-
T ss_pred             EEECCCC
Confidence            9999983

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.30  E-value=0.0025  Score=53.91  Aligned_cols=94  Identities=16%  Similarity=0.126  Sum_probs=64.6

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEEe-ChhhHHHHhhhcCCCCCcEEEECC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~-~~~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                      +++|+|.|+ |.+|..+++.++.. |.+|+++.++    +++.+.+++.|...+. |..+.+.+.+.++..++|+|+.|+
T Consensus        39 ~~~v~IiG~-G~~G~~~a~~L~~~~g~~V~vid~~----~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~  113 (183)
T 3c85_A           39 HAQVLILGM-GRIGTGAYDELRARYGKISLGIEIR----EEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAM  113 (183)
T ss_dssp             TCSEEEECC-SHHHHHHHHHHHHHHCSCEEEEESC----HHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECC
T ss_pred             CCcEEEECC-CHHHHHHHHHHHhccCCeEEEEECC----HHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeC
Confidence            678999998 99999999999999 9999888644    3445667778887554 443322233332456799999999


Q ss_pred             CchhHH-HH---HHhcccCCEEEEE
Q psy2960         292 GGNSAT-NL---LRTLVSKGVMVTY  312 (405)
Q Consensus       292 g~~~~~-~~---~~~l~~~G~~v~~  312 (405)
                      +..... ..   ++.+.+..+++..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~ii~~  138 (183)
T 3c85_A          114 PHHQGNQTALEQLQRRNYKGQIAAI  138 (183)
T ss_dssp             SSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CChHHHHHHHHHHHHHCCCCEEEEE
Confidence            975443 22   3344445566654

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.29  E-value=0.0015  Score=57.01  Aligned_cols=96  Identities=5%  Similarity=-0.055  Sum_probs=61.6

Q ss_pred             CEEEEeCCCcHHHHHHHHHHH-HcCCcEEEEecCCc-chHHHHHHHHHcC--CcEE-eChhhHHHHhhhcCCCCCcEEEE
Q psy2960         215 DVVIQNGANSACGQNVIQIAR-HWGLKTINIVRNRD-DIDKLKSYLKSLG--ADYV-FTEEELRNISRDASIPKPKLALN  289 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~-~~G~~v~~~~~~~~-~~~~~~~~~~~lg--~~~v-~~~~d~~~i~~~t~g~g~Dvvld  289 (405)
                      ++|||.||+|++|.+.++.+. ..|++|+++.++.+ +    .+.+...+  ...+ .|..|.+.+.+..  .++|+||+
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~----~~~~~~~~~~~~~~~~D~~d~~~~~~~~--~~~d~vv~   79 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTR----IPPEIIDHERVTVIEGSFQNPGXLEQAV--TNAEVVFV   79 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHH----SCHHHHTSTTEEEEECCTTCHHHHHHHH--TTCSEEEE
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCcccc----chhhccCCCceEEEECCCCCHHHHHHHH--cCCCEEEE
Confidence            469999999999999998888 89999999987643 2    22221122  2222 2444433333332  36899999


Q ss_pred             CCCchh--HHHHHHhccc--CCEEEEEeccC
Q psy2960         290 CVGGNS--ATNLLRTLVS--KGVMVTYGGMS  316 (405)
Q Consensus       290 ~~g~~~--~~~~~~~l~~--~G~~v~~g~~~  316 (405)
                      +.|...  ....++.++.  .|+|+.++...
T Consensus        80 ~ag~~n~~~~~~~~~~~~~~~~~iv~iSs~~  110 (221)
T 3r6d_A           80 GAMESGSDMASIVKALSRXNIRRVIGVSMAG  110 (221)
T ss_dssp             SCCCCHHHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred             cCCCCChhHHHHHHHHHhcCCCeEEEEeece
Confidence            998622  3344555543  36899988643

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=97.29  E-value=0.00075  Score=61.64  Aligned_cols=79  Identities=16%  Similarity=0.273  Sum_probs=54.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Chhh---HHH----HhhhcCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEEE---LRN----ISRDASIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~d---~~~----i~~~t~g~  282 (405)
                      +|+++||.||+|++|.+.++.+...|++|+.+.++.+..++..+.+.+.|....+   |-.|   ...    +.+.  .+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~--~g  104 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLK--FG  104 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHH--HS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH--hC
Confidence            5789999999999999999999999999999987755444444444444543322   3222   222    2222  24


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      ++|+++++.|.
T Consensus       105 ~iD~lVnnAg~  115 (283)
T 3v8b_A          105 HLDIVVANAGI  115 (283)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999883

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=97.29  E-value=0.0008  Score=60.54  Aligned_cols=78  Identities=10%  Similarity=0.196  Sum_probs=53.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEE-ecCCcchHHHHHHHHHcCCcEEe---Chhh---HHH----HhhhcCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINI-VRNRDDIDKLKSYLKSLGADYVF---TEEE---LRN----ISRDASI  281 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~-~~~~~~~~~~~~~~~~lg~~~v~---~~~d---~~~----i~~~t~g  281 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+ .++.+..++..+.+.+.|....+   |-.|   ...    +.+.  .
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~--~   80 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDET--F   80 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH--c
Confidence            57899999999999999999999999999987 44443334444445555654332   3222   222    2222  2


Q ss_pred             CCCcEEEECCC
Q psy2960         282 PKPKLALNCVG  292 (405)
Q Consensus       282 ~g~Dvvld~~g  292 (405)
                      +++|+++++.|
T Consensus        81 g~id~lv~nAg   91 (258)
T 3oid_A           81 GRLDVFVNNAA   91 (258)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            46899999997

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=97.29  E-value=0.001  Score=59.26  Aligned_cols=37  Identities=24%  Similarity=0.262  Sum_probs=33.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD  249 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~  249 (405)
                      .|.+|||.||+|++|.+.++.+...|++|+++.++.+
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~   41 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSD   41 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5789999999999999999999999999999887644

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=97.28  E-value=0.0011  Score=60.12  Aligned_cols=80  Identities=10%  Similarity=0.083  Sum_probs=51.9

Q ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHH-HHcCC-cEE-eChhh---HHH-Hhhhc-CCC
Q psy2960         213 PGDVVIQNGAN--SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGA-DYV-FTEEE---LRN-ISRDA-SIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~--G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~-~~lg~-~~v-~~~~d---~~~-i~~~t-~g~  282 (405)
                      .|+++||.|++  |++|.+.++.+...|++|+.+.++.+ .++..+.+ ...|. ..+ .|-.+   ... +.+.. ..+
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   83 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-LEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLG   83 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-THHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-HHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            47899999998  99999999999999999999987764 23333333 33342 222 23322   222 22211 124


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      ++|+++++.|.
T Consensus        84 ~id~lv~nAg~   94 (275)
T 2pd4_A           84 SLDFIVHSVAF   94 (275)
T ss_dssp             CEEEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            78999999873

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=97.28  E-value=0.00066  Score=61.57  Aligned_cols=78  Identities=14%  Similarity=0.218  Sum_probs=54.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH----HhhhcCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN----ISRDASIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~----i~~~t~g~  282 (405)
                      .|+++||.||+|++|.+.+..+...|++|+.+.++.+..++..+.+++.|....   .|-.|   ...    +.+.  .+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~--~g  104 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKE--FG  104 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHH--HS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHH--cC
Confidence            578999999999999999999999999999998776554444455555554321   23222   222    2222  24


Q ss_pred             CCcEEEECCC
Q psy2960         283 KPKLALNCVG  292 (405)
Q Consensus       283 g~Dvvld~~g  292 (405)
                      ++|+++++.|
T Consensus       105 ~iD~lvnnAg  114 (270)
T 3ftp_A          105 ALNVLVNNAG  114 (270)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6899999997

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=97.28  E-value=0.00035  Score=62.48  Aligned_cols=76  Identities=17%  Similarity=0.330  Sum_probs=51.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc---EEeChhh---HHH----HhhhcCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD---YVFTEEE---LRN----ISRDASIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~---~v~~~~d---~~~----i~~~t~g~  282 (405)
                      .|+++||.|++|++|.+.++.+...|++|+.+.++.+..++.   ...++..   ...|-.|   ...    +.+.  .+
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~---~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~--~g   82 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAI---SDYLGDNGKGMALNVTNPESIEAVLKAITDE--FG   82 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH---HHHHGGGEEEEECCTTCHHHHHHHHHHHHHH--HC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH---HHHhcccceEEEEeCCCHHHHHHHHHHHHHH--cC
Confidence            588999999999999999999999999999988765433222   2233322   1223322   222    2222  24


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      ++|+++++.|.
T Consensus        83 ~iD~lv~nAg~   93 (248)
T 3op4_A           83 GVDILVNNAGI   93 (248)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999883

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=97.28  E-value=0.00074  Score=62.07  Aligned_cols=79  Identities=13%  Similarity=0.237  Sum_probs=55.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC-cEE---eChhh---HHH----HhhhcCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA-DYV---FTEEE---LRN----ISRDASI  281 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~-~~v---~~~~d---~~~----i~~~t~g  281 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.++.++..+.+.+.+. ...   .|-.|   ...    +.+.  .
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~--~  117 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDA--F  117 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHH--c
Confidence            578999999999999999999999999999998887665555555555552 221   23222   222    2222  2


Q ss_pred             CCCcEEEECCCc
Q psy2960         282 PKPKLALNCVGG  293 (405)
Q Consensus       282 ~g~Dvvld~~g~  293 (405)
                      +++|+++++.|.
T Consensus       118 g~iD~lvnnAg~  129 (293)
T 3rih_A          118 GALDVVCANAGI  129 (293)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            478999999873

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=97.27  E-value=0.0017  Score=60.62  Aligned_cols=81  Identities=7%  Similarity=0.045  Sum_probs=53.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc---CCcEE-eChhhHHHHhhhcCCCCCcEEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL---GADYV-FTEEELRNISRDASIPKPKLAL  288 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l---g~~~v-~~~~d~~~i~~~t~g~g~Dvvl  288 (405)
                      .+.+|||.||+|++|...++.+...|++|+++.++.+......+.+...   +...+ .|-.|.+.+.+.....++|+|+
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   83 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAI   83 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEE
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEE
Confidence            4679999999999999999999999999999987655443333333322   22222 2333322222222224799999


Q ss_pred             ECCCc
Q psy2960         289 NCVGG  293 (405)
Q Consensus       289 d~~g~  293 (405)
                      ++.|.
T Consensus        84 h~A~~   88 (341)
T 3enk_A           84 HFAAL   88 (341)
T ss_dssp             ECCCC
T ss_pred             ECccc
Confidence            99974

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=97.26  E-value=0.0011  Score=60.06  Aligned_cols=80  Identities=16%  Similarity=0.208  Sum_probs=52.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Chhh---HHHH-hhhcCCCCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEEE---LRNI-SRDASIPKPK  285 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~d---~~~i-~~~t~g~g~D  285 (405)
                      .|+++||.||+|++|.+.++.+...|++|+++.++ +..++..+.+.+.+....+   |-.|   ...+ ......+++|
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~g~iD  108 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEIADGGGSAEAVVADLADLEGAANVAEELAATRRVD  108 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-THHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCH-HHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhcCCCc
Confidence            58999999999999999999999999999888744 3334444444455543222   3222   2221 1111124799


Q ss_pred             EEEECCCc
Q psy2960         286 LALNCVGG  293 (405)
Q Consensus       286 vvld~~g~  293 (405)
                      +++++.|.
T Consensus       109 ~lv~nAg~  116 (273)
T 3uf0_A          109 VLVNNAGI  116 (273)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999873

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.26  E-value=0.0021  Score=61.74  Aligned_cols=101  Identities=13%  Similarity=0.157  Sum_probs=70.8

Q ss_pred             HHHHHHhh-cCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhc
Q psy2960         201 AYRMLKDY-NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDA  279 (405)
Q Consensus       201 a~~al~~~-~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t  279 (405)
                      .+.++.+. ...-.|++|+|.|. |.+|..+++.++.+|++|+++-.+    +.+...+...|.. +.+   ++++.   
T Consensus       233 lvdgI~Ratg~~L~GKTVgVIG~-G~IGr~vA~~lrafGa~Viv~d~d----p~~a~~A~~~G~~-vv~---LeElL---  300 (464)
T 3n58_A          233 LVDGIRRGTDVMMAGKVAVVCGY-GDVGKGSAQSLAGAGARVKVTEVD----PICALQAAMDGFE-VVT---LDDAA---  300 (464)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSS----HHHHHHHHHTTCE-ECC---HHHHG---
T ss_pred             HHHHHHHhcCCcccCCEEEEECc-CHHHHHHHHHHHHCCCEEEEEeCC----cchhhHHHhcCce-ecc---HHHHH---
Confidence            34444332 33468999999999 999999999999999998877432    2223334456664 333   23321   


Q ss_pred             CCCCCcEEEECCCchhH--HHHHHhcccCCEEEEEecc
Q psy2960         280 SIPKPKLALNCVGGNSA--TNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       280 ~g~g~Dvvld~~g~~~~--~~~~~~l~~~G~~v~~g~~  315 (405)
                        ...|+|+.+.|...+  .+.+..|++++.++.+|..
T Consensus       301 --~~ADIVv~atgt~~lI~~e~l~~MK~GAILINvGRg  336 (464)
T 3n58_A          301 --STADIVVTTTGNKDVITIDHMRKMKDMCIVGNIGHF  336 (464)
T ss_dssp             --GGCSEEEECCSSSSSBCHHHHHHSCTTEEEEECSSS
T ss_pred             --hhCCEEEECCCCccccCHHHHhcCCCCeEEEEcCCC
Confidence              246999999987654  4678999999999998854

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=97.26  E-value=0.00087  Score=62.38  Aligned_cols=80  Identities=16%  Similarity=0.219  Sum_probs=55.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC--cEE---eChh---hHHH-Hhhhc-CCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA--DYV---FTEE---ELRN-ISRDA-SIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~--~~v---~~~~---d~~~-i~~~t-~g~  282 (405)
                      .|++|||.||+|++|.+.+..+...|++|+++.++.++.++..+.+...+.  ...   .|-.   ++.. +.+.. ..+
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   86 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFG   86 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhCC
Confidence            578999999999999999999999999999999876655555555554443  211   2322   2322 22211 124


Q ss_pred             CCcEEEECCC
Q psy2960         283 KPKLALNCVG  292 (405)
Q Consensus       283 g~Dvvld~~g  292 (405)
                      ++|++|++.|
T Consensus        87 ~id~lv~nAg   96 (319)
T 3ioy_A           87 PVSILCNNAG   96 (319)
T ss_dssp             CEEEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7899999998

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=97.26  E-value=0.00062  Score=62.04  Aligned_cols=76  Identities=14%  Similarity=0.139  Sum_probs=51.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE-E--eChhh---HHH----HhhhcCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-V--FTEEE---LRN----ISRDASIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v--~~~~d---~~~----i~~~t~g~  282 (405)
                      .|+++||.||+|++|.+.++.+...|++|+++.++.+..   .+...+++... .  .|-.|   ...    +.+.  .+
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~--~g  102 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAA---DAAATKIGCGAAACRVDVSDEQQIIAMVDACVAA--FG  102 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHH---HHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHH--HS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHH--cC
Confidence            588999999999999999999999999999887664432   23334445332 2  23222   222    2222  24


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      ++|+++++.|.
T Consensus       103 ~iD~lvnnAg~  113 (277)
T 3gvc_A          103 GVDKLVANAGV  113 (277)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999984

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=97.26  E-value=0.002  Score=58.10  Aligned_cols=80  Identities=16%  Similarity=0.200  Sum_probs=52.1

Q ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHH-HHcCCcEEe--Chhh---HHH-Hhhhc-CCC
Q psy2960         213 PGDVVIQNGAN--SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVF--TEEE---LRN-ISRDA-SIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~--G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~-~~lg~~~v~--~~~d---~~~-i~~~t-~g~  282 (405)
                      .|+++||.||+  |++|.+.++.+...|++|+.+.++. ..++..+.+ ...+...++  |-.+   ... +.+.. ..+
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   86 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND-KLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWP   86 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST-TTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcH-HHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            57899999998  9999999999999999999988765 222333333 233432222  4322   333 32221 134


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      ++|+++++.|.
T Consensus        87 ~iD~lv~~Ag~   97 (265)
T 1qsg_A           87 KFDGFVHSIGF   97 (265)
T ss_dssp             SEEEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68999999873

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=97.25  E-value=0.00071  Score=60.60  Aligned_cols=92  Identities=13%  Similarity=0.183  Sum_probs=59.1

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcC--CCCCcEEEECCC
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDAS--IPKPKLALNCVG  292 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~--g~g~Dvvld~~g  292 (405)
                      ++|||.||+|++|.++++.+...|++|+++.++.++.+.          +...|-.+.+.+.+...  .+++|+++++.|
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~----------~~~~Dl~~~~~v~~~~~~~~~~id~lv~~Ag   71 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA----------DLSTAEGRKQAIADVLAKCSKGMDGLVLCAG   71 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC----------CTTSHHHHHHHHHHHHTTCTTCCSEEEECCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc----------ccccCCCCHHHHHHHHHHhCCCCCEEEECCC
Confidence            479999999999999999999999999999876543211          11112222222222211  257899999998


Q ss_pred             chh-------------------HHHHHHhccc--CCEEEEEeccC
Q psy2960         293 GNS-------------------ATNLLRTLVS--KGVMVTYGGMS  316 (405)
Q Consensus       293 ~~~-------------------~~~~~~~l~~--~G~~v~~g~~~  316 (405)
                      ...                   ...++..+.+  .|+++.+++..
T Consensus        72 ~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~  116 (257)
T 1fjh_A           72 LGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVA  116 (257)
T ss_dssp             CCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGG
T ss_pred             CCCCcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChh
Confidence            532                   1223444433  38999998643

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=97.25  E-value=0.0011  Score=59.63  Aligned_cols=81  Identities=9%  Similarity=0.125  Sum_probs=53.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChh---hHHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEE---ELRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~---d~~~-i~~~t-~g~g~  284 (405)
                      .|+++||.||+|++|.+.++.+...|++|+++.++.++.++..+.+.+.|....   .|-.   +... +.+.. ..+++
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   92 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGGV   92 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            578999999999999999999999999999988765443333344444454322   2322   2222 22110 12479


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        93 D~lv~~Ag~  101 (260)
T 2zat_A           93 DILVSNAAV  101 (260)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=97.24  E-value=0.001  Score=59.57  Aligned_cols=80  Identities=16%  Similarity=0.207  Sum_probs=53.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t-~g~g~  284 (405)
                      .+.+|||.||+|++|.+.++.+...|++|+++.++.+..+...+.++..+....   .|-.|   ... +.+.. ...++
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   91 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEGRV   91 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            578999999999999999999999999999988765443333444444454322   23222   222 22110 12468


Q ss_pred             cEEEECCC
Q psy2960         285 KLALNCVG  292 (405)
Q Consensus       285 Dvvld~~g  292 (405)
                      |++|++.|
T Consensus        92 d~vi~~Ag   99 (260)
T 3awd_A           92 DILVACAG   99 (260)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999987

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=97.24  E-value=0.00075  Score=58.87  Aligned_cols=93  Identities=10%  Similarity=0.160  Sum_probs=61.8

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhh-HHHHhhhcCCCCCcEEEECCCc
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEE-LRNISRDASIPKPKLALNCVGG  293 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d-~~~i~~~t~g~g~Dvvld~~g~  293 (405)
                      +|||.||+|.+|...++.+...|++|++++++.++.+.    .  .+...+ .|..| .+.+.+..  .++|+||++.|.
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~----~--~~~~~~~~D~~d~~~~~~~~~--~~~d~vi~~ag~   73 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQ----Y--NNVKAVHFDVDWTPEEMAKQL--HGMDAIINVSGS   73 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCC----C--TTEEEEECCTTSCHHHHHTTT--TTCSEEEECCCC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhh----c--CCceEEEecccCCHHHHHHHH--cCCCEEEECCcC
Confidence            69999999999999999999999999999987643211    0  222222 24444 33344443  369999999985


Q ss_pred             hh----------HHHHHHhcccC--CEEEEEeccC
Q psy2960         294 NS----------ATNLLRTLVSK--GVMVTYGGMS  316 (405)
Q Consensus       294 ~~----------~~~~~~~l~~~--G~~v~~g~~~  316 (405)
                      ..          ....++.+++.  ++|+.++...
T Consensus        74 ~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~  108 (219)
T 3dqp_A           74 GGKSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIF  108 (219)
T ss_dssp             TTSSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             CCCCcEeEeHHHHHHHHHHHHHhCCCEEEEECccc
Confidence            32          23344444443  5899988643

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.24  E-value=0.0016  Score=59.18  Aligned_cols=38  Identities=18%  Similarity=0.227  Sum_probs=33.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD  250 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~  250 (405)
                      .|+++||.||+|++|.+.++.+...|++|+++.++.++
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~   42 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAER   42 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            47899999999999999999998999999998876543

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=97.23  E-value=0.0011  Score=60.05  Aligned_cols=79  Identities=11%  Similarity=0.146  Sum_probs=53.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc-chHHHHHHHHHcCCcEEe---Chhh---HHH----HhhhcCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD-DIDKLKSYLKSLGADYVF---TEEE---LRN----ISRDASI  281 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~-~~~~~~~~~~~lg~~~v~---~~~d---~~~----i~~~t~g  281 (405)
                      .|+++||.||+|++|.+.++.+...|++|+++.++.+ ..++..+.+++.|....+   |-.|   ...    +.+.  .
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~--~  104 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIER--W  104 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH--c
Confidence            5889999999999999999999999999998876432 333334445555554332   3222   222    2222  2


Q ss_pred             CCCcEEEECCCc
Q psy2960         282 PKPKLALNCVGG  293 (405)
Q Consensus       282 ~g~Dvvld~~g~  293 (405)
                      +++|+++++.|.
T Consensus       105 g~id~lv~nAg~  116 (269)
T 4dmm_A          105 GRLDVLVNNAGI  116 (269)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999874

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=97.23  E-value=0.0011  Score=60.13  Aligned_cols=81  Identities=22%  Similarity=0.242  Sum_probs=54.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcc-hHHHHHHHHHcCCcEEe---Chh---hHHH-Hhhhc-CCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYLKSLGADYVF---TEE---ELRN-ISRDA-SIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~-~~~~~~~~~~lg~~~v~---~~~---d~~~-i~~~t-~g~g  283 (405)
                      .|++|||.||+|++|.+.++.+...|++|+++.++.+. .+...+.+++.|....+   |-.   +... +.+.. ...+
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~  107 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSDGG  107 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            58899999999999999999999999999999875433 23333445555544322   322   2222 22211 1247


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|++|++.|.
T Consensus       108 id~li~nAg~  117 (271)
T 4iin_A          108 LSYLVNNAGV  117 (271)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999984

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.23  E-value=0.0018  Score=63.11  Aligned_cols=99  Identities=13%  Similarity=0.232  Sum_probs=68.9

Q ss_pred             HHHHhhcCC-CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCC
Q psy2960         203 RMLKDYNSL-SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASI  281 (405)
Q Consensus       203 ~al~~~~~~-~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g  281 (405)
                      .++.+..+. -.|++|+|.|+ |++|.++++.++..|++|+++-.+    +.+...+...|++ +.+.++   +     .
T Consensus       253 dgi~r~tg~~L~GKtVvVtGa-GgIG~aiA~~Laa~GA~Viv~D~~----~~~a~~Aa~~g~d-v~~lee---~-----~  318 (488)
T 3ond_A          253 DGLMRATDVMIAGKVAVVAGY-GDVGKGCAAALKQAGARVIVTEID----PICALQATMEGLQ-VLTLED---V-----V  318 (488)
T ss_dssp             HHHHHHHCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSC----HHHHHHHHHTTCE-ECCGGG---T-----T
T ss_pred             HHHHHHcCCcccCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCC----HHHHHHHHHhCCc-cCCHHH---H-----H
Confidence            344333333 47999999999 799999999999999988776432    3334555566653 322222   1     2


Q ss_pred             CCCcEEEECCCchhH--HHHHHhcccCCEEEEEecc
Q psy2960         282 PKPKLALNCVGGNSA--TNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       282 ~g~Dvvld~~g~~~~--~~~~~~l~~~G~~v~~g~~  315 (405)
                      ..+|+++++.|....  ...++.+++++.++.+|..
T Consensus       319 ~~aDvVi~atG~~~vl~~e~l~~mk~gaiVvNaG~~  354 (488)
T 3ond_A          319 SEADIFVTTTGNKDIIMLDHMKKMKNNAIVCNIGHF  354 (488)
T ss_dssp             TTCSEEEECSSCSCSBCHHHHTTSCTTEEEEESSST
T ss_pred             HhcCEEEeCCCChhhhhHHHHHhcCCCeEEEEcCCC
Confidence            368999999986543  3478899999999888853

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=97.23  E-value=0.00066  Score=61.96  Aligned_cols=78  Identities=21%  Similarity=0.247  Sum_probs=52.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Chh---hHHH----HhhhcCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEE---ELRN----ISRDASIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~---d~~~----i~~~t~g~  282 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.+..++..+.+.+.+....+   |-.   +...    +.+.  .+
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~--~g   84 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRR--FG   84 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHH--HS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH--cC
Confidence            5789999999999999999999999999988876654433333444334443332   222   2222    2222  24


Q ss_pred             CCcEEEECCC
Q psy2960         283 KPKLALNCVG  292 (405)
Q Consensus       283 g~Dvvld~~g  292 (405)
                      ++|+++++.|
T Consensus        85 ~iD~lvnnAg   94 (280)
T 3tox_A           85 GLDTAFNNAG   94 (280)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6999999988

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=97.23  E-value=0.00082  Score=61.37  Aligned_cols=78  Identities=19%  Similarity=0.241  Sum_probs=53.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE----eChhh---HHH----HhhhcCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV----FTEEE---LRN----ISRDASI  281 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v----~~~~d---~~~----i~~~t~g  281 (405)
                      .|.+|||.||+|++|.+.++.+...|++|+++.++.+..++..+.+++.|...+    .|-.|   ...    +.+.  .
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~--~  104 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKL--M  104 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHH--c
Confidence            478999999999999999999999999999998776554444444455554322    23222   222    2222  2


Q ss_pred             CCCcEEEEC-CC
Q psy2960         282 PKPKLALNC-VG  292 (405)
Q Consensus       282 ~g~Dvvld~-~g  292 (405)
                      +++|++|++ .|
T Consensus       105 g~iD~li~naag  116 (286)
T 1xu9_A          105 GGLDMLILNHIT  116 (286)
T ss_dssp             TSCSEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            479999998 44

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=97.21  E-value=0.0011  Score=59.21  Aligned_cols=81  Identities=17%  Similarity=0.208  Sum_probs=54.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecC-CcchHHHHHHHHHcCCcEE---eChhh---HHH-Hhhhc-CCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN-RDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDA-SIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~-~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t-~g~g  283 (405)
                      .|.+|||.||+|++|.+.+..+...|++|+++.++ .+..+...+.++..+....   .|-.+   ... +.+.. ..++
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   85 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKFGG   85 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            47899999999999999999999999999999887 5554444444444454321   23222   222 22111 0237


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|++|++.|.
T Consensus        86 id~vi~~Ag~   95 (258)
T 3afn_B           86 IDVLINNAGG   95 (258)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999884

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=97.21  E-value=0.0012  Score=60.05  Aligned_cols=81  Identities=16%  Similarity=0.222  Sum_probs=52.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecC-------------CcchHHHHHHHHHcCCcEEe---Chhh---HH
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN-------------RDDIDKLKSYLKSLGADYVF---TEEE---LR  273 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~-------------~~~~~~~~~~~~~lg~~~v~---~~~d---~~  273 (405)
                      .|+++||.||++++|.+.++.+...|++|+++.++             .+..++..+.....+....+   |-.|   ..
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~   89 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDRLR   89 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence            58999999999999999999999999999988652             22223333344444544332   3322   22


Q ss_pred             H-Hhhhc-CCCCCcEEEECCCc
Q psy2960         274 N-ISRDA-SIPKPKLALNCVGG  293 (405)
Q Consensus       274 ~-i~~~t-~g~g~Dvvld~~g~  293 (405)
                      . +.+.. ..+++|+++++.|.
T Consensus        90 ~~~~~~~~~~g~id~lvnnAg~  111 (277)
T 3tsc_A           90 KVVDDGVAALGRLDIIVANAGV  111 (277)
T ss_dssp             HHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHcCCCCEEEECCCC
Confidence            2 22211 02469999999973

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=97.20  E-value=0.0021  Score=58.78  Aligned_cols=80  Identities=18%  Similarity=0.207  Sum_probs=50.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCC---cEEEEecCCcchHHHHHHHHHc--CCcEE---eCh---hhHHH-Hhhhc-
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGL---KTINIVRNRDDIDKLKSYLKSL--GADYV---FTE---EELRN-ISRDA-  279 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~---~v~~~~~~~~~~~~~~~~~~~l--g~~~v---~~~---~d~~~-i~~~t-  279 (405)
                      .|+++||.||+|++|.+.+..+...|+   +|+.+.++.+..++..+.+...  +....   .|-   ++... +.+.. 
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  111 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ  111 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            578999999999999999988777777   8888876655443333333332  33222   132   22333 22221 


Q ss_pred             CCCCCcEEEECCC
Q psy2960         280 SIPKPKLALNCVG  292 (405)
Q Consensus       280 ~g~g~Dvvld~~g  292 (405)
                      ..+++|+++++.|
T Consensus       112 ~~g~iD~lVnnAG  124 (287)
T 3rku_A          112 EFKDIDILVNNAG  124 (287)
T ss_dssp             GGCSCCEEEECCC
T ss_pred             hcCCCCEEEECCC
Confidence            1246999999988

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=97.20  E-value=0.00056  Score=61.65  Aligned_cols=80  Identities=14%  Similarity=0.181  Sum_probs=53.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH-Hh---hhcCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN-IS---RDASIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~---~~t~g~  282 (405)
                      .+.+|||.||+|++|.+.++.+...|++|+++.++.+..+...+.+.+.+....   .|-.+   ... +.   +.. +.
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~-~~   91 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMF-GG   91 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH-TT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHh-CC
Confidence            578999999999999999999999999999988765443333444444454322   23222   222 22   111 24


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      ++|++|++.|.
T Consensus        92 ~id~li~~Ag~  102 (266)
T 1xq1_A           92 KLDILINNLGA  102 (266)
T ss_dssp             CCSEEEEECCC
T ss_pred             CCcEEEECCCC
Confidence            79999999873

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=97.20  E-value=0.00062  Score=62.12  Aligned_cols=79  Identities=14%  Similarity=0.257  Sum_probs=52.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE--E--eChhh---HHH----HhhhcCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY--V--FTEEE---LRN----ISRDASI  281 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~--v--~~~~d---~~~----i~~~t~g  281 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.+..++..+.+.+.+...  .  .|-.|   ...    +.+.  .
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~--~  109 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAE--F  109 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHH--c
Confidence            58999999999999999999999999999999877654444444443333222  2  23222   222    2222  2


Q ss_pred             CCCcEEEECCCc
Q psy2960         282 PKPKLALNCVGG  293 (405)
Q Consensus       282 ~g~Dvvld~~g~  293 (405)
                      +++|+++++.|.
T Consensus       110 g~iD~lvnnAG~  121 (281)
T 4dry_A          110 ARLDLLVNNAGS  121 (281)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            478999999974

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=97.20  E-value=0.00098  Score=60.23  Aligned_cols=78  Identities=15%  Similarity=0.228  Sum_probs=53.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH-cCCcEEe---Ch---hhHHH----HhhhcCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADYVF---TE---EELRN----ISRDASI  281 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~-lg~~~v~---~~---~d~~~----i~~~t~g  281 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.++.++..+.+.+ .+....+   |-   ++...    +.+.  .
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~--~   96 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEA--F   96 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH--c
Confidence            578999999999999999999999999999988775554443344433 4443222   32   22222    2222  2


Q ss_pred             CCCcEEEECCC
Q psy2960         282 PKPKLALNCVG  292 (405)
Q Consensus       282 ~g~Dvvld~~g  292 (405)
                      +++|+++++.|
T Consensus        97 g~id~lv~nAg  107 (266)
T 4egf_A           97 GGLDVLVNNAG  107 (266)
T ss_dssp             TSCSEEEEECC
T ss_pred             CCCCEEEECCC
Confidence            47999999987

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=97.20  E-value=0.0011  Score=59.74  Aligned_cols=80  Identities=11%  Similarity=0.155  Sum_probs=51.1

Q ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHH-HHcCCcEEe--Chhh---HHH-Hhhhc-CCC
Q psy2960         213 PGDVVIQNGAN--SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVF--TEEE---LRN-ISRDA-SIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~--G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~-~~lg~~~v~--~~~d---~~~-i~~~t-~g~  282 (405)
                      .|+++||.||+  |++|.+.++.+...|++|+.+.++.+ .++..+.+ .+.+...++  |-.+   ... +.+.. ..+
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER-LRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFG   85 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGG-GHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            47899999998  99999999988888999999887653 22233333 334432222  3222   222 22110 023


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      ++|+++++.|.
T Consensus        86 ~iD~lv~~Ag~   96 (261)
T 2wyu_A           86 GLDYLVHAIAF   96 (261)
T ss_dssp             SEEEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68999999873

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.20  E-value=0.0012  Score=59.60  Aligned_cols=81  Identities=16%  Similarity=0.232  Sum_probs=52.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHH-HHcCCcEE---eChhh---HHH-Hhhhc-CCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYV---FTEEE---LRN-ISRDA-SIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~-~~lg~~~v---~~~~d---~~~-i~~~t-~g~g  283 (405)
                      .|+++||.||+|++|.+.++.+...|++|+++.++.+..++..+.+ ...|....   .|-.+   ... +.+.. ..++
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   99 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFGK   99 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999999887654433322222 33354322   23222   222 22110 0246


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|+++++.|.
T Consensus       100 iD~lvnnAg~  109 (267)
T 1vl8_A          100 LDTVVNAAGI  109 (267)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            9999999873

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.20  E-value=0.00062  Score=61.47  Aligned_cols=78  Identities=14%  Similarity=0.229  Sum_probs=50.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t-~g~g~  284 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.+.   ..+...+++....   .|-.|   ... +.+.. ..+.+
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   81 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERL---LAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRL   81 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            47899999999999999999999999999998866432   2233344543221   23222   222 22110 12468


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        82 D~lvnnAg~   90 (263)
T 2a4k_A           82 HGVAHFAGV   90 (263)
T ss_dssp             CEEEEGGGG
T ss_pred             cEEEECCCC
Confidence            999999873

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.19  E-value=0.0023  Score=55.52  Aligned_cols=91  Identities=19%  Similarity=0.263  Sum_probs=60.9

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEEECCCch
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALNCVGGN  294 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld~~g~~  294 (405)
                      +|||.||+|.+|...++.+...|.+|++++++.++    .+.+. .+...+ .|..|.+.  +.  -.++|+||++.|..
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~----~~~~~-~~~~~~~~D~~d~~~--~~--~~~~d~vi~~ag~~   72 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGK----ITQTH-KDINILQKDIFDLTL--SD--LSDQNVVVDAYGIS   72 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHH----HHHHC-SSSEEEECCGGGCCH--HH--HTTCSEEEECCCSS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchh----hhhcc-CCCeEEeccccChhh--hh--hcCCCEEEECCcCC
Confidence            69999999999999999999999999999987543    22221 334333 23333222  11  14689999999853


Q ss_pred             ---------hHHHHHHhccc--CCEEEEEecc
Q psy2960         295 ---------SATNLLRTLVS--KGVMVTYGGM  315 (405)
Q Consensus       295 ---------~~~~~~~~l~~--~G~~v~~g~~  315 (405)
                               .....++.++.  .++++.++..
T Consensus        73 ~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           73 PDEAEKHVTSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             TTTTTSHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             ccccchHHHHHHHHHHHHHhcCCceEEEEecc
Confidence                     22345566654  4699988753

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=97.19  E-value=0.0021  Score=57.83  Aligned_cols=100  Identities=17%  Similarity=0.153  Sum_probs=66.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Ch---hhHHH----HhhhcCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TE---EELRN----ISRDASIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~---~d~~~----i~~~t~g~  282 (405)
                      .|+++||.||++|+|.+.++.+...|++|+++.++.++. +..+...+.|.....   |-   ++...    +.+.  -+
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~-~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~--~G   82 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDG-AFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIAT--FG   82 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCH-HHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHH--HS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccH-HHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHH--hC
Confidence            689999999999999999999999999999998876653 334444455543222   32   22222    2222  24


Q ss_pred             CCcEEEECCCch-------------------------hHHHHHHhc-ccCCEEEEEecc
Q psy2960         283 KPKLALNCVGGN-------------------------SATNLLRTL-VSKGVMVTYGGM  315 (405)
Q Consensus       283 g~Dvvld~~g~~-------------------------~~~~~~~~l-~~~G~~v~~g~~  315 (405)
                      ++|+++++.|..                         ..+.++..| ..+|+||.+++.
T Consensus        83 ~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~  141 (258)
T 4gkb_A           83 RLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSK  141 (258)
T ss_dssp             CCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCT
T ss_pred             CCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeeh
Confidence            799999999831                         012233444 357999999864

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=97.18  E-value=0.00065  Score=60.82  Aligned_cols=97  Identities=21%  Similarity=0.222  Sum_probs=62.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH-Hhhhc-CCCCCcEEEEC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDA-SIPKPKLALNC  290 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t-~g~g~Dvvld~  290 (405)
                      -|++|||.||+|++|.+.++.+...|++|+++.++.++...     ..+-.+ +-|.++... +.+.. ..+++|+++++
T Consensus        21 m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~-----~~~~~d-~~d~~~v~~~~~~~~~~~g~iD~li~~   94 (251)
T 3orf_A           21 MSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNAD-----HSFTIK-DSGEEEIKSVIEKINSKSIKVDTFVCA   94 (251)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTSS-----EEEECS-CSSHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccccc-----cceEEE-eCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            37899999999999999999999999999999877653210     011112 223333333 33221 23578999999


Q ss_pred             CCc--------hh-------------------HHHHHHhcccCCEEEEEecc
Q psy2960         291 VGG--------NS-------------------ATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       291 ~g~--------~~-------------------~~~~~~~l~~~G~~v~~g~~  315 (405)
                      .|.        +.                   ...++..++++|+|+.++..
T Consensus        95 Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~  146 (251)
T 3orf_A           95 AGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGAS  146 (251)
T ss_dssp             CCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred             CccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEech
Confidence            983        10                   12234556678999999864

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=97.17  E-value=0.0014  Score=59.06  Aligned_cols=81  Identities=17%  Similarity=0.254  Sum_probs=51.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc-CCcEE---eChhh---HHH-Hhhhc-CCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADYV---FTEEE---LRN-ISRDA-SIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l-g~~~v---~~~~d---~~~-i~~~t-~g~g  283 (405)
                      .|+++||.||+|++|.+.++.+...|++|+++.++.++.++..+.+++. +....   .|-.+   ... +.+.. ..++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   85 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSFGG   85 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4789999999999999999999999999999887654333322333322 43322   23222   222 22110 0236


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|+++++.|.
T Consensus        86 id~lv~~Ag~   95 (263)
T 3ai3_A           86 ADILVNNAGT   95 (263)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            8999999973

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=97.17  E-value=0.0014  Score=59.24  Aligned_cols=80  Identities=14%  Similarity=0.151  Sum_probs=52.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc--CCcEE---eChhh---HHH-Hhhhc-CCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL--GADYV---FTEEE---LRN-ISRDA-SIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l--g~~~v---~~~~d---~~~-i~~~t-~g~  282 (405)
                      .|+++||.||+|++|.+.++.+...|++|+++.++.+..++..+.+.+.  +....   .|-.+   ... +.+.. ..+
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   91 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   91 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999999999999999999887654433333333332  43322   23222   222 22111 124


Q ss_pred             CCcEEEECCC
Q psy2960         283 KPKLALNCVG  292 (405)
Q Consensus       283 g~Dvvld~~g  292 (405)
                      ++|+++++.|
T Consensus        92 ~id~lv~nAg  101 (267)
T 1iy8_A           92 RIDGFFNNAG  101 (267)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6899999987

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=97.16  E-value=0.0045  Score=56.36  Aligned_cols=80  Identities=10%  Similarity=0.082  Sum_probs=51.4

Q ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHH-HHcCC-cEE-eChhh---HHH-Hhhhc-CCC
Q psy2960         213 PGDVVIQNGAN--SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGA-DYV-FTEEE---LRN-ISRDA-SIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~--G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~-~~lg~-~~v-~~~~d---~~~-i~~~t-~g~  282 (405)
                      .|+++||.||+  |++|.+.++.+...|++|+++.++.+ .++..+.+ ...|. ..+ .|-.+   ... +.+.. ..+
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   98 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPK-LEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENWG   98 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGG-GHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHH-HHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            57899999998  89999999999899999999887653 22233333 23342 222 23222   222 22111 124


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      ++|+++++.|.
T Consensus        99 ~iD~lv~~Ag~  109 (285)
T 2p91_A           99 SLDIIVHSIAY  109 (285)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999873

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=97.16  E-value=0.00087  Score=60.02  Aligned_cols=82  Identities=16%  Similarity=0.253  Sum_probs=53.2

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC---cEE-eCh--hh---HHH-Hhhhc-C
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA---DYV-FTE--EE---LRN-ISRDA-S  280 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~---~~v-~~~--~d---~~~-i~~~t-~  280 (405)
                      -.|+++||.||+|++|.+.++.+...|++|+.+.++.+..++..+.+.+.+.   ..+ .|-  .+   ... +.+.. .
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   89 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVN   89 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHh
Confidence            3688999999999999999999999999999988775544433333333221   111 232  22   222 22111 1


Q ss_pred             CCCCcEEEECCCc
Q psy2960         281 IPKPKLALNCVGG  293 (405)
Q Consensus       281 g~g~Dvvld~~g~  293 (405)
                      .+++|+++++.|.
T Consensus        90 ~g~id~lv~nAg~  102 (252)
T 3f1l_A           90 YPRLDGVLHNAGL  102 (252)
T ss_dssp             CSCCSEEEECCCC
T ss_pred             CCCCCEEEECCcc
Confidence            3479999999984

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=97.16  E-value=0.0011  Score=60.30  Aligned_cols=95  Identities=11%  Similarity=-0.056  Sum_probs=62.9

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEEECCCc
Q psy2960         216 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALNCVGG  293 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld~~g~  293 (405)
                      +|||.||+|.+|...++.+... |.+|++++++.++.    ..+...+...+ .|..|.+.+.+..  .++|+||.+.+.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~----~~~~~~~v~~~~~D~~d~~~l~~~~--~~~d~vi~~a~~   75 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKV----PDDWRGKVSVRQLDYFNQESMVEAF--KGMDTVVFIPSI   75 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGS----CGGGBTTBEEEECCTTCHHHHHHHT--TTCSEEEECCCC
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHH----HHhhhCCCEEEEcCCCCHHHHHHHH--hCCCEEEEeCCC
Confidence            5999999999999999998887 99999999876542    11223344433 3444443344442  478999999884


Q ss_pred             h--------hHHHHHHhcccC--CEEEEEeccC
Q psy2960         294 N--------SATNLLRTLVSK--GVMVTYGGMS  316 (405)
Q Consensus       294 ~--------~~~~~~~~l~~~--G~~v~~g~~~  316 (405)
                      .        .....++.++..  ++|+.++...
T Consensus        76 ~~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~  108 (289)
T 3e48_A           76 IHPSFKRIPEVENLVYAAKQSGVAHIIFIGYYA  108 (289)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHTTCCEEEEEEESC
T ss_pred             CccchhhHHHHHHHHHHHHHcCCCEEEEEcccC
Confidence            2        223345555544  4899888643

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=97.16  E-value=0.0015  Score=59.35  Aligned_cols=79  Identities=14%  Similarity=0.185  Sum_probs=53.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC------------cchHHHHHHHHHcCCcEEe---Chh---hHHH
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR------------DDIDKLKSYLKSLGADYVF---TEE---ELRN  274 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~------------~~~~~~~~~~~~lg~~~v~---~~~---d~~~  274 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.            +..++..+...+.|....+   |-.   +...
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~   88 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAALES   88 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH
Confidence            588999999999999999999999999999888752            2223333444555654332   322   2222


Q ss_pred             ----HhhhcCCCCCcEEEECCCc
Q psy2960         275 ----ISRDASIPKPKLALNCVGG  293 (405)
Q Consensus       275 ----i~~~t~g~g~Dvvld~~g~  293 (405)
                          +.+.  .+++|+++++.|.
T Consensus        89 ~~~~~~~~--~g~id~lv~nAg~  109 (281)
T 3s55_A           89 FVAEAEDT--LGGIDIAITNAGI  109 (281)
T ss_dssp             HHHHHHHH--HTCCCEEEECCCC
T ss_pred             HHHHHHHh--cCCCCEEEECCCC
Confidence                2222  2479999999983

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=97.16  E-value=0.00087  Score=59.48  Aligned_cols=77  Identities=21%  Similarity=0.345  Sum_probs=51.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc-CCcEE-eChhhHHHHhhhc-CCCCCcEEEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADYV-FTEEELRNISRDA-SIPKPKLALN  289 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l-g~~~v-~~~~d~~~i~~~t-~g~g~Dvvld  289 (405)
                      +|++|||.|++|++|.+.++.+...|++|+++.++.++.   .+...++ +...+ .|-.+.+.+.+.. ..+++|++|+
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~   82 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADL---DSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVN   82 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEE
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHHcCCCCEEEEeCCCHHHHHHHHHHcCCCCEEEE
Confidence            578999999999999999999999999999887654332   1223333 33222 2433333332222 2346899999


Q ss_pred             CCC
Q psy2960         290 CVG  292 (405)
Q Consensus       290 ~~g  292 (405)
                      +.|
T Consensus        83 ~Ag   85 (244)
T 3d3w_A           83 NAA   85 (244)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            987

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=97.15  E-value=0.0026  Score=56.91  Aligned_cols=78  Identities=17%  Similarity=0.171  Sum_probs=50.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-e--Chh---hHHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-F--TEE---ELRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~--~~~---d~~~-i~~~t-~g~g~  284 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.+..   .+...+++.... +  |-.   +... +.+.. ..+.+
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   81 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAG---QQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTL   81 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHH---HHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            478999999999999999999999999999887654332   223334444322 2  322   2222 22110 02468


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        82 d~lv~~Ag~   90 (253)
T 1hxh_A           82 NVLVNNAGI   90 (253)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=97.15  E-value=0.00096  Score=59.56  Aligned_cols=81  Identities=19%  Similarity=0.247  Sum_probs=53.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t-~g~g~  284 (405)
                      .|.+|||.||+|++|.+.++.+...|++|+++.++.+..+...+.++..+....   .|-.|   ... +.+.. ...++
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   89 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKV   89 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            578999999999999999999999999999988765443333444444454322   23222   222 22110 12468


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |++|++.|.
T Consensus        90 d~vi~~Ag~   98 (255)
T 1fmc_A           90 DILVNNAGG   98 (255)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=97.14  E-value=0.0015  Score=59.31  Aligned_cols=79  Identities=14%  Similarity=0.163  Sum_probs=52.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecC------------CcchHHHHHHHHHcCCcEEe---Chh---hHHH
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN------------RDDIDKLKSYLKSLGADYVF---TEE---ELRN  274 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~------------~~~~~~~~~~~~~lg~~~v~---~~~---d~~~  274 (405)
                      .|+++||.||+|++|.+.++.+...|++|+++.++            .+..+...+.+...+....+   |-.   +...
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~   91 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESLSA   91 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH
Confidence            58899999999999999999999999999988765            22223333444455554332   322   2222


Q ss_pred             ----HhhhcCCCCCcEEEECCCc
Q psy2960         275 ----ISRDASIPKPKLALNCVGG  293 (405)
Q Consensus       275 ----i~~~t~g~g~Dvvld~~g~  293 (405)
                          +.+.  .+++|+++++.|.
T Consensus        92 ~~~~~~~~--~g~id~lv~nAg~  112 (278)
T 3sx2_A           92 ALQAGLDE--LGRLDIVVANAGI  112 (278)
T ss_dssp             HHHHHHHH--HCCCCEEEECCCC
T ss_pred             HHHHHHHH--cCCCCEEEECCCC
Confidence                2222  2469999999984

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=97.14  E-value=0.0014  Score=59.17  Aligned_cols=79  Identities=15%  Similarity=0.236  Sum_probs=53.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH-cCCc-EE---eChhh---HHH----HhhhcC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGAD-YV---FTEEE---LRN----ISRDAS  280 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~-lg~~-~v---~~~~d---~~~----i~~~t~  280 (405)
                      .|+++||.||++++|.+.++.+...|++|+.+.++.++.++..+.+.+ .+.. ..   .|-.|   ...    +.+.  
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~--   84 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERT--   84 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHH--
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHH--
Confidence            578999999999999999999999999999988765544444444443 4432 22   23222   222    2222  


Q ss_pred             CCCCcEEEECCCc
Q psy2960         281 IPKPKLALNCVGG  293 (405)
Q Consensus       281 g~g~Dvvld~~g~  293 (405)
                      .+++|+++++.|.
T Consensus        85 ~g~id~lvnnAg~   97 (265)
T 3lf2_A           85 LGCASILVNNAGQ   97 (265)
T ss_dssp             HCSCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            2468999999983

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=97.14  E-value=0.0017  Score=58.32  Aligned_cols=80  Identities=11%  Similarity=0.144  Sum_probs=51.8

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcc--hHHHHHHHHHcCCcEE---eChh---hHHH-Hhhhc-CCCC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD--IDKLKSYLKSLGADYV---FTEE---ELRN-ISRDA-SIPK  283 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~--~~~~~~~~~~lg~~~v---~~~~---d~~~-i~~~t-~g~g  283 (405)
                      |+++||.|++|++|.+.++.+...|++|+++.++.+.  .++..+.+++.+....   .|-.   +... +.+.. ..++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   81 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLGG   81 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            6789999999999999999888889999998876544  3333333444454322   2322   2222 22110 0246


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|+++++.|.
T Consensus        82 iD~lv~nAg~   91 (258)
T 3a28_C           82 FDVLVNNAGI   91 (258)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            8999999873

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=97.14  E-value=0.001  Score=59.45  Aligned_cols=81  Identities=16%  Similarity=0.211  Sum_probs=52.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecC-CcchHHHHHHHHHcCCcEEe---Chhh---HHH----Hhhh---
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN-RDDIDKLKSYLKSLGADYVF---TEEE---LRN----ISRD---  278 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~-~~~~~~~~~~~~~lg~~~v~---~~~d---~~~----i~~~---  278 (405)
                      .|+++||.||++++|.+.++.+...|++|+++.+. .+..++..+.+.+.+.....   |-.+   ...    +.+.   
T Consensus         6 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   85 (255)
T 3icc_A            6 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQN   85 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHHhcc
Confidence            58899999999999999999999999999887544 33333344444555543222   3222   111    2111   


Q ss_pred             -cCCCCCcEEEECCCc
Q psy2960         279 -ASIPKPKLALNCVGG  293 (405)
Q Consensus       279 -t~g~g~Dvvld~~g~  293 (405)
                       .+...+|+++++.|.
T Consensus        86 ~~~~~~id~lv~nAg~  101 (255)
T 3icc_A           86 RTGSTKFDILINNAGI  101 (255)
T ss_dssp             HHSSSCEEEEEECCCC
T ss_pred             cccCCcccEEEECCCC
Confidence             122458999999873

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=97.13  E-value=0.00045  Score=60.62  Aligned_cols=86  Identities=16%  Similarity=0.116  Sum_probs=58.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH-HhhhcCCCCCcEEEECC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCV  291 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~Dvvld~~  291 (405)
                      .|+++||.||++++|.+.++.+...|++|+.+.++.+             .| +-+.++... +.+.   +++|+++++.
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~-------------~D-~~~~~~v~~~~~~~---g~id~lv~nA   67 (223)
T 3uce_A            5 DKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG-------------LD-ISDEKSVYHYFETI---GAFDHLIVTA   67 (223)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT-------------CC-TTCHHHHHHHHHHH---CSEEEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc-------------cC-CCCHHHHHHHHHHh---CCCCEEEECC
Confidence            4789999999999999999998888999988875432             11 112233333 3333   4689999988


Q ss_pred             Cch---------------------------hHHHHHHhcccCCEEEEEecc
Q psy2960         292 GGN---------------------------SATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       292 g~~---------------------------~~~~~~~~l~~~G~~v~~g~~  315 (405)
                      |..                           ....++..++++|+++.+++.
T Consensus        68 g~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~  118 (223)
T 3uce_A           68 GSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGM  118 (223)
T ss_dssp             CCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCG
T ss_pred             CCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecch
Confidence            832                           011223455678999999864

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=97.13  E-value=0.0015  Score=59.35  Aligned_cols=80  Identities=15%  Similarity=0.188  Sum_probs=50.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe--Chhh---HHH-Hhhhc-CCCCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEEE---LRN-ISRDA-SIPKPK  285 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~--~~~d---~~~-i~~~t-~g~g~D  285 (405)
                      .|+++||.||+|++|.+.++.+...|++|+++.++.+..++..+.+.+.|.-.++  |-.|   ... +.+.. ..+++|
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD  107 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELSARLD  107 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHCSCCS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence            5789999999999999999999999999998876654333222333233311112  3222   222 22211 134799


Q ss_pred             EEEECCC
Q psy2960         286 LALNCVG  292 (405)
Q Consensus       286 vvld~~g  292 (405)
                      ++|++.|
T Consensus       108 ~lvnnAg  114 (276)
T 2b4q_A          108 ILVNNAG  114 (276)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999997

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=97.13  E-value=0.0017  Score=59.78  Aligned_cols=80  Identities=16%  Similarity=0.245  Sum_probs=53.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecC------------CcchHHHHHHHHHcCCcEEe---Chhh---HHH
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN------------RDDIDKLKSYLKSLGADYVF---TEEE---LRN  274 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~------------~~~~~~~~~~~~~lg~~~v~---~~~d---~~~  274 (405)
                      .|+++||.||++++|.+.++.+...|++|+++.++            .+..++..+.+...|....+   |-.|   ...
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~  106 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAMQA  106 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHH
Confidence            58899999999999999999999999999988765            22223334445556654332   3222   222


Q ss_pred             -Hhhhc-CCCCCcEEEECCC
Q psy2960         275 -ISRDA-SIPKPKLALNCVG  292 (405)
Q Consensus       275 -i~~~t-~g~g~Dvvld~~g  292 (405)
                       +.+.. ..+++|+++++.|
T Consensus       107 ~~~~~~~~~g~iD~lv~nAg  126 (299)
T 3t7c_A          107 AVDDGVTQLGRLDIVLANAA  126 (299)
T ss_dssp             HHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHhCCCCEEEECCC
Confidence             22111 1247999999987

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=97.12  E-value=0.0013  Score=58.80  Aligned_cols=81  Identities=14%  Similarity=0.173  Sum_probs=53.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc--C-C-cEE--eChhh---HHH-Hhhhc-CC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL--G-A-DYV--FTEEE---LRN-ISRDA-SI  281 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l--g-~-~~v--~~~~d---~~~-i~~~t-~g  281 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.++.++..+.+.+.  + . -.+  .|-.+   ... +.+.. ..
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKY   85 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHhc
Confidence            5789999999999999999999899999999987765544444444433  2 1 122  23222   222 22111 12


Q ss_pred             CCCcEEEECCCc
Q psy2960         282 PKPKLALNCVGG  293 (405)
Q Consensus       282 ~g~Dvvld~~g~  293 (405)
                      +++|+++++.|.
T Consensus        86 g~iD~lvnnAg~   97 (250)
T 3nyw_A           86 GAVDILVNAAAM   97 (250)
T ss_dssp             CCEEEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            478999999984

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=97.12  E-value=0.002  Score=58.40  Aligned_cols=79  Identities=14%  Similarity=0.154  Sum_probs=53.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcc-------hHHHHHHHHHcCCcEEe---Chhh---HHH----H
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-------IDKLKSYLKSLGADYVF---TEEE---LRN----I  275 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~-------~~~~~~~~~~lg~~~v~---~~~d---~~~----i  275 (405)
                      .|+++||.|+++++|.+.++.+...|++|+.+.++.++       .++..+.....|....+   |-.+   ...    +
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   84 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAAT   84 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            57899999999999999999999999999999877543       23333444455543322   3222   222    2


Q ss_pred             hhhcCCCCCcEEEECCCc
Q psy2960         276 SRDASIPKPKLALNCVGG  293 (405)
Q Consensus       276 ~~~t~g~g~Dvvld~~g~  293 (405)
                      .+.  .+++|+++++.|.
T Consensus        85 ~~~--~g~iD~lvnnAG~  100 (274)
T 3e03_A           85 VDT--FGGIDILVNNASA  100 (274)
T ss_dssp             HHH--HSCCCEEEECCCC
T ss_pred             HHH--cCCCCEEEECCCc
Confidence            222  2479999999983

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.12  E-value=0.0017  Score=59.05  Aligned_cols=80  Identities=16%  Similarity=0.171  Sum_probs=53.2

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecC-------------CcchHHHHHHHHHcCCcEEe---Chhh---H
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN-------------RDDIDKLKSYLKSLGADYVF---TEEE---L  272 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~-------------~~~~~~~~~~~~~lg~~~v~---~~~d---~  272 (405)
                      -.|+++||.||++++|.+.++.+...|++|+++.++             .+..++..+.....|....+   |-.|   .
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v   92 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAAL   92 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence            368999999999999999999999999999988752             22223333444455544332   3222   2


Q ss_pred             HH----HhhhcCCCCCcEEEECCCc
Q psy2960         273 RN----ISRDASIPKPKLALNCVGG  293 (405)
Q Consensus       273 ~~----i~~~t~g~g~Dvvld~~g~  293 (405)
                      ..    +.+.  .+++|+++++.|.
T Consensus        93 ~~~~~~~~~~--~g~id~lvnnAg~  115 (280)
T 3pgx_A           93 RELVADGMEQ--FGRLDVVVANAGV  115 (280)
T ss_dssp             HHHHHHHHHH--HCCCCEEEECCCC
T ss_pred             HHHHHHHHHH--cCCCCEEEECCCC
Confidence            22    2222  2479999999883

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.11  E-value=0.0016  Score=59.88  Aligned_cols=80  Identities=21%  Similarity=0.274  Sum_probs=53.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC---cEE---eChhh---HHH-Hhhhc-CC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA---DYV---FTEEE---LRN-ISRDA-SI  281 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~---~~v---~~~~d---~~~-i~~~t-~g  281 (405)
                      .|+++||.||+|++|.+.++.+...|++|+++.++.++.++..+.+.+.|.   ...   .|-.+   ... +.+.. ..
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  104 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF  104 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHhc
Confidence            578999999999999999999999999999998765544333344444443   221   23222   222 22110 12


Q ss_pred             CCCcEEEECCC
Q psy2960         282 PKPKLALNCVG  292 (405)
Q Consensus       282 ~g~Dvvld~~g  292 (405)
                      +++|+++++.|
T Consensus       105 g~iD~lvnnAG  115 (297)
T 1xhl_A          105 GKIDILVNNAG  115 (297)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            47999999987

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=97.11  E-value=0.0017  Score=58.30  Aligned_cols=80  Identities=16%  Similarity=0.252  Sum_probs=51.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcc-hHHHHHHHHHc-CCcEE-e--Chhh---HHH-Hhhhc-CCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYLKSL-GADYV-F--TEEE---LRN-ISRDA-SIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~-~~~~~~~~~~l-g~~~v-~--~~~d---~~~-i~~~t-~g~  282 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.+. .++..+.+.+. |.... +  |-.|   ... +.+.. ..+
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   82 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMG   82 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            47899999999999999999999999999988776543 33333333332 43322 2  3222   222 22111 024


Q ss_pred             CCcEEEECCC
Q psy2960         283 KPKLALNCVG  292 (405)
Q Consensus       283 g~Dvvld~~g  292 (405)
                      ++|+++++.|
T Consensus        83 ~iD~lv~~Ag   92 (260)
T 1x1t_A           83 RIDILVNNAG   92 (260)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6999999987

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.11  E-value=0.0016  Score=59.29  Aligned_cols=80  Identities=14%  Similarity=0.198  Sum_probs=52.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC---cE-E--eChhh---HHH-Hhhhc-CC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA---DY-V--FTEEE---LRN-ISRDA-SI  281 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~---~~-v--~~~~d---~~~-i~~~t-~g  281 (405)
                      .|+++||.||+|++|.+.++.+...|++|+++.++.++.++..+.+.+.+.   .. +  .|-.|   ... +.+.. ..
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   84 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHhc
Confidence            578999999999999999999999999999988765443333333433343   21 1  23222   222 22110 02


Q ss_pred             CCCcEEEECCC
Q psy2960         282 PKPKLALNCVG  292 (405)
Q Consensus       282 ~g~Dvvld~~g  292 (405)
                      +++|+++++.|
T Consensus        85 g~iD~lv~nAg   95 (280)
T 1xkq_A           85 GKIDVLVNNAG   95 (280)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            46899999987

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=97.09  E-value=0.0012  Score=58.78  Aligned_cols=79  Identities=15%  Similarity=0.265  Sum_probs=55.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc--EE--eCh--h---hHHH----Hhhhc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YV--FTE--E---ELRN----ISRDA  279 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~--~v--~~~--~---d~~~----i~~~t  279 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.++.++..+.+++.+..  .+  .+.  .   +...    +.+. 
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~-   91 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHE-   91 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHH-
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHh-
Confidence            5889999999999999999999999999999987766555555555555521  22  222  2   2222    2222 


Q ss_pred             CCCCCcEEEECCCc
Q psy2960         280 SIPKPKLALNCVGG  293 (405)
Q Consensus       280 ~g~g~Dvvld~~g~  293 (405)
                       .+++|+++++.|.
T Consensus        92 -~g~id~lv~nAg~  104 (247)
T 3i1j_A           92 -FGRLDGLLHNASI  104 (247)
T ss_dssp             -HSCCSEEEECCCC
T ss_pred             -CCCCCEEEECCcc
Confidence             2479999999873

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.09  E-value=0.0028  Score=55.16  Aligned_cols=91  Identities=19%  Similarity=0.196  Sum_probs=59.8

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEEECCCch
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALNCVGGN  294 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld~~g~~  294 (405)
                      +|||.||+|.+|...++.+...|.+|++++++.++    .+.+...+...+ .|..|.+.  +.  -.++|+||++.|..
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~----~~~~~~~~~~~~~~D~~d~~~--~~--~~~~d~vi~~ag~~   73 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQK----AADRLGATVATLVKEPLVLTE--AD--LDSVDAVVDALSVP   73 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HHHHTCTTSEEEECCGGGCCH--HH--HTTCSEEEECCCCC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccc----cccccCCCceEEecccccccH--hh--cccCCEEEECCccC
Confidence            69999999999999999999999999999876433    222222344433 23333222  22  14689999999862


Q ss_pred             -----------hHHHHHHhcc-cCCEEEEEec
Q psy2960         295 -----------SATNLLRTLV-SKGVMVTYGG  314 (405)
Q Consensus       295 -----------~~~~~~~~l~-~~G~~v~~g~  314 (405)
                                 .....++.++ .+++++.++.
T Consensus        74 ~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS  105 (224)
T 3h2s_A           74 WGSGRGYLHLDFATHLVSLLRNSDTLAVFILG  105 (224)
T ss_dssp             TTSSCTHHHHHHHHHHHHTCTTCCCEEEEECC
T ss_pred             CCcchhhHHHHHHHHHHHHHHHcCCcEEEEec
Confidence                       1123455554 3478998864

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=97.09  E-value=0.0026  Score=58.77  Aligned_cols=94  Identities=15%  Similarity=0.157  Sum_probs=62.5

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEEECCCc
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALNCVGG  293 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld~~g~  293 (405)
                      .+|||.||+|.+|...++.+...|.+|++++++.+.....++.+...|...+ .|..|.+.+.+..  .++|+||.+++.
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~--~~~d~vi~~a~~   89 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELM--KKVDVVISALAF   89 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHH--TTCSEEEECCCG
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHH--cCCCEEEECCch
Confidence            4799999999999999999999999999999876422333333445566544 3444443344433  368999999985


Q ss_pred             h---hHHHHHHhcccC---CEEE
Q psy2960         294 N---SATNLLRTLVSK---GVMV  310 (405)
Q Consensus       294 ~---~~~~~~~~l~~~---G~~v  310 (405)
                      .   .....++.++..   ++|+
T Consensus        90 ~~~~~~~~l~~aa~~~g~v~~~v  112 (318)
T 2r6j_A           90 PQILDQFKILEAIKVAGNIKRFL  112 (318)
T ss_dssp             GGSTTHHHHHHHHHHHCCCCEEE
T ss_pred             hhhHHHHHHHHHHHhcCCCCEEE
Confidence            3   233445554433   4776

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.08  E-value=0.0039  Score=53.82  Aligned_cols=101  Identities=16%  Similarity=0.250  Sum_probs=66.5

Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc-EE-eChhhHHH-HhhhcCCCC
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YV-FTEEELRN-ISRDASIPK  283 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~-~v-~~~~d~~~-i~~~t~g~g  283 (405)
                      ....++++++||-.|+ | .|..++.+|+. +++++++-.+++..+...+.++..|.+ .+ +-..|..+ +..   ...
T Consensus        49 ~~l~~~~~~~vLDlGc-G-~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~---~~~  122 (204)
T 3njr_A           49 AALAPRRGELLWDIGG-G-SGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALAD---LPL  122 (204)
T ss_dssp             HHHCCCTTCEEEEETC-T-TCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTT---SCC
T ss_pred             HhcCCCCCCEEEEecC-C-CCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhccc---CCC
Confidence            3467889999999998 4 48899999988 888888865544444444445556654 22 22222222 221   246


Q ss_pred             CcEEEECCCch--hHHHHHHhcccCCEEEEEe
Q psy2960         284 PKLALNCVGGN--SATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       284 ~Dvvld~~g~~--~~~~~~~~l~~~G~~v~~g  313 (405)
                      +|+|+...+..  .+..+.+.|+|+|+++...
T Consensus       123 ~D~v~~~~~~~~~~l~~~~~~LkpgG~lv~~~  154 (204)
T 3njr_A          123 PEAVFIGGGGSQALYDRLWEWLAPGTRIVANA  154 (204)
T ss_dssp             CSEEEECSCCCHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CCEEEECCcccHHHHHHHHHhcCCCcEEEEEe
Confidence            89999765432  3456679999999998765

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=97.08  E-value=0.002  Score=57.42  Aligned_cols=79  Identities=13%  Similarity=0.159  Sum_probs=53.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC-cchHHHHHHHHHcCCcEEe---Chh---hHHH----HhhhcCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR-DDIDKLKSYLKSLGADYVF---TEE---ELRN----ISRDASI  281 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~-~~~~~~~~~~~~lg~~~v~---~~~---d~~~----i~~~t~g  281 (405)
                      .++++||.||+|++|.+.++.+...|++|+.+.+.. +..++..+.+++.|.+..+   |-.   +...    +.+.  .
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~--~   80 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQ--F   80 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH--c
Confidence            468999999999999999999999999998887643 3333334445555654332   322   2222    2222  2


Q ss_pred             CCCcEEEECCCc
Q psy2960         282 PKPKLALNCVGG  293 (405)
Q Consensus       282 ~g~Dvvld~~g~  293 (405)
                      +++|+++++.|.
T Consensus        81 g~id~lv~nAg~   92 (246)
T 3osu_A           81 GSLDVLVNNAGI   92 (246)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            478999999883

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=97.08  E-value=0.0053  Score=56.03  Aligned_cols=80  Identities=6%  Similarity=0.035  Sum_probs=50.9

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH-cCCc-EEeChhhHHHHhhhcCCCCCcEEEE
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGAD-YVFTEEELRNISRDASIPKPKLALN  289 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~-lg~~-~v~~~~d~~~i~~~t~g~g~Dvvld  289 (405)
                      -+|+++||.|++|++|.+++..+...|++|+++.++.++.++..+.+.. .+.. ...|..+.+.+.+..  ..+|++++
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~--~~~DvlVn  194 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAV--KGAHFVFT  194 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHT--TTCSEEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHH--HhCCEEEE
Confidence            3689999999889999999999999999977777664433333232222 1322 222333322233321  24799999


Q ss_pred             CCCc
Q psy2960         290 CVGG  293 (405)
Q Consensus       290 ~~g~  293 (405)
                      |+|.
T Consensus       195 ~ag~  198 (287)
T 1lu9_A          195 AGAI  198 (287)
T ss_dssp             CCCT
T ss_pred             CCCc
Confidence            9973

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=97.08  E-value=0.0021  Score=56.85  Aligned_cols=98  Identities=14%  Similarity=0.125  Sum_probs=62.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCC--cEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALN  289 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~--~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld  289 (405)
                      .+.+|||.||+|++|.+.++.+...|+  +|+++.++.+..+..    ..-+...+ .|..|.+.+.+..  .++|+|++
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~----~~~~~~~~~~D~~d~~~~~~~~--~~~d~vi~   90 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEE----AYKNVNQEVVDFEKLDDYASAF--QGHDVGFC   90 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSG----GGGGCEEEECCGGGGGGGGGGG--SSCSEEEE
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCcccc----ccCCceEEecCcCCHHHHHHHh--cCCCEEEE
Confidence            367999999999999999999999999  999998775532110    01122222 2444433344433  26899999


Q ss_pred             CCCchh---------------HHHHHHhccc--CCEEEEEeccC
Q psy2960         290 CVGGNS---------------ATNLLRTLVS--KGVMVTYGGMS  316 (405)
Q Consensus       290 ~~g~~~---------------~~~~~~~l~~--~G~~v~~g~~~  316 (405)
                      |.|...               ....++.+.+  .++|+.++...
T Consensus        91 ~ag~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~  134 (242)
T 2bka_A           91 CLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKG  134 (242)
T ss_dssp             CCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             CCCcccccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCc
Confidence            998531               1123344433  36999998643

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=97.08  E-value=0.0021  Score=58.60  Aligned_cols=79  Identities=9%  Similarity=0.147  Sum_probs=54.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcc-------hHHHHHHHHHcCCcEEe---Chhh---HHH----H
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-------IDKLKSYLKSLGADYVF---TEEE---LRN----I  275 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~-------~~~~~~~~~~lg~~~v~---~~~d---~~~----i  275 (405)
                      .|+++||.||++++|.+.++.+...|++|+.+.++.++       .++..+.+.+.+....+   |-.+   ...    +
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   87 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVAKT   87 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHH
Confidence            57899999999999999999999999999999887652       23334445555553322   3222   222    2


Q ss_pred             hhhcCCCCCcEEEECCCc
Q psy2960         276 SRDASIPKPKLALNCVGG  293 (405)
Q Consensus       276 ~~~t~g~g~Dvvld~~g~  293 (405)
                      .+.  .+++|+++++.|.
T Consensus        88 ~~~--~g~id~lvnnAg~  103 (285)
T 3sc4_A           88 VEQ--FGGIDICVNNASA  103 (285)
T ss_dssp             HHH--HSCCSEEEECCCC
T ss_pred             HHH--cCCCCEEEECCCC
Confidence            222  2479999999983

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=97.06  E-value=0.0019  Score=58.01  Aligned_cols=38  Identities=18%  Similarity=0.146  Sum_probs=33.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD  250 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~  250 (405)
                      .+.+|||.||+|++|.+.+..+...|++|+++.++.+.
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~   43 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAA   43 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHH
Confidence            57899999999999999999999999999998876543

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=97.06  E-value=0.002  Score=58.70  Aligned_cols=35  Identities=20%  Similarity=0.184  Sum_probs=32.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN  247 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~  247 (405)
                      .|+++||.||++++|.+.++.+...|++|+++.++
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~   44 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDIC   44 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEecc
Confidence            58999999999999999999999999999988654

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=97.05  E-value=0.0019  Score=60.04  Aligned_cols=79  Identities=15%  Similarity=0.128  Sum_probs=54.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecC----------CcchHHHHHHHHHcCCcEEe---Chh---hHHH--
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN----------RDDIDKLKSYLKSLGADYVF---TEE---ELRN--  274 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~----------~~~~~~~~~~~~~lg~~~v~---~~~---d~~~--  274 (405)
                      .|+++||.||+|++|.+.+..+...|++|+++.++          .+..+...+.+.+.|....+   |-.   +...  
T Consensus        26 ~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~  105 (322)
T 3qlj_A           26 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAGLI  105 (322)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHH
Confidence            68999999999999999999999999999998765          34444445555566654332   222   2222  


Q ss_pred             --HhhhcCCCCCcEEEECCCc
Q psy2960         275 --ISRDASIPKPKLALNCVGG  293 (405)
Q Consensus       275 --i~~~t~g~g~Dvvld~~g~  293 (405)
                        +.+.  .+++|+++++.|.
T Consensus       106 ~~~~~~--~g~iD~lv~nAg~  124 (322)
T 3qlj_A          106 QTAVET--FGGLDVLVNNAGI  124 (322)
T ss_dssp             HHHHHH--HSCCCEEECCCCC
T ss_pred             HHHHHH--cCCCCEEEECCCC
Confidence              2222  2479999999983

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=97.05  E-value=0.0023  Score=57.59  Aligned_cols=77  Identities=13%  Similarity=0.073  Sum_probs=52.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhh---HHH-Hhhhc-CCCCCcE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEE---LRN-ISRDA-SIPKPKL  286 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d---~~~-i~~~t-~g~g~Dv  286 (405)
                      .|+++||.||+|++|.+.++.+...|++|+++.++.++.   .+.+.+.+...+ .|-.+   ... +.+.. ..+++|+
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~  102 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHAS---VTELRQAGAVALYGDFSCETGIMAFIDLLKTQTSSLRA  102 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHH---HHHHHHHTCEEEECCTTSHHHHHHHHHHHHHHCSCCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHH---HHHHHhcCCeEEECCCCCHHHHHHHHHHHHHhcCCCCE
Confidence            478999999999999999999999999999998776542   344445565433 23322   222 22211 1347999


Q ss_pred             EEECCC
Q psy2960         287 ALNCVG  292 (405)
Q Consensus       287 vld~~g  292 (405)
                      ++++.|
T Consensus       103 lv~nAg  108 (260)
T 3gem_A          103 VVHNAS  108 (260)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999998

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=97.05  E-value=0.0025  Score=56.49  Aligned_cols=80  Identities=11%  Similarity=0.154  Sum_probs=51.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH-cCCcEE---eChhh---HHH-Hhhhc-CCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LGADYV---FTEEE---LRN-ISRDA-SIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~-lg~~~v---~~~~d---~~~-i~~~t-~g~g  283 (405)
                      .|.++||.||+|++|.+.++.+...|++|+++.++.+..+...+.+.+ .+....   .|-.|   ... +.+.. ..++
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   85 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVDG   85 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            578999999999999999999999999999998765433332233322 343322   13222   222 22111 1247


Q ss_pred             CcEEEECCC
Q psy2960         284 PKLALNCVG  292 (405)
Q Consensus       284 ~Dvvld~~g  292 (405)
                      +|++|++.|
T Consensus        86 ~d~vi~~Ag   94 (248)
T 2pnf_A           86 IDILVNNAG   94 (248)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            999999987

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=97.04  E-value=0.0011  Score=59.17  Aligned_cols=77  Identities=19%  Similarity=0.271  Sum_probs=50.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE--E--eChhh---HHH-HhhhcCCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY--V--FTEEE---LRN-ISRDASIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~--v--~~~~d---~~~-i~~~t~g~g~  284 (405)
                      .|+++||.||+|++|.+.++.+...|++|+++.++.++.+   +...+++...  .  .|-.|   ... +.+.....++
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~i   86 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALD---RAAQELGAAVAARIVADVTDAEAMTAAAAEAEAVAPV   86 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH---HHHHHHGGGEEEEEECCTTCHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHHhcccceeEEEEecCCHHHHHHHHHHHHhhCCC
Confidence            5789999999999999999999999999999887644322   2233344332  1  23322   222 2221112468


Q ss_pred             cEEEECCC
Q psy2960         285 KLALNCVG  292 (405)
Q Consensus       285 Dvvld~~g  292 (405)
                      |++|++.|
T Consensus        87 d~li~~Ag   94 (254)
T 2wsb_A           87 SILVNSAG   94 (254)
T ss_dssp             CEEEECCC
T ss_pred             cEEEECCc
Confidence            99999987

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=97.04  E-value=0.0022  Score=59.60  Aligned_cols=80  Identities=14%  Similarity=0.213  Sum_probs=52.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecC------------CcchHHHHHHHHHcCCcEEe---Chhh---HHH
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN------------RDDIDKLKSYLKSLGADYVF---TEEE---LRN  274 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~------------~~~~~~~~~~~~~lg~~~v~---~~~d---~~~  274 (405)
                      .|+++||.||+|++|.+.++.+...|++|+++.++            .+..++..+.+.+.|....+   |-.|   ...
T Consensus        45 ~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~  124 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASLQA  124 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence            68999999999999999999999999999988654            12222333344455654332   3222   222


Q ss_pred             -Hhhhc-CCCCCcEEEECCC
Q psy2960         275 -ISRDA-SIPKPKLALNCVG  292 (405)
Q Consensus       275 -i~~~t-~g~g~Dvvld~~g  292 (405)
                       +.+.. ..+++|++|++.|
T Consensus       125 ~~~~~~~~~g~iD~lVnnAg  144 (317)
T 3oec_A          125 VVDEALAEFGHIDILVSNVG  144 (317)
T ss_dssp             HHHHHHHHHSCCCEEEECCC
T ss_pred             HHHHHHHHcCCCCEEEECCC
Confidence             22111 1247999999998

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=97.03  E-value=0.0012  Score=59.71  Aligned_cols=76  Identities=16%  Similarity=0.159  Sum_probs=52.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH----HhhhcCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN----ISRDASIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~----i~~~t~g~  282 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.+..++.   ..+++....   .|-.|   ...    +.+.  .+
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~---~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~--~g   84 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGA---AASVGRGAVHHVVDLTNEVSVRALIDFTIDT--FG   84 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHH---HHHHCTTCEEEECCTTCHHHHHHHHHHHHHH--HS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH---HHHhCCCeEEEECCCCCHHHHHHHHHHHHHH--cC
Confidence            578999999999999999999999999999998776654332   334443222   23222   222    2222  24


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      ++|+++++.|.
T Consensus        85 ~id~lv~nAg~   95 (271)
T 3tzq_B           85 RLDIVDNNAAH   95 (271)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68999999873

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=97.03  E-value=0.0021  Score=59.00  Aligned_cols=80  Identities=16%  Similarity=0.266  Sum_probs=51.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH-----cCCcEE---eChhh---HHH-Hhhhc-
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-----LGADYV---FTEEE---LRN-ISRDA-  279 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~-----lg~~~v---~~~~d---~~~-i~~~t-  279 (405)
                      .|.+|||.||+|++|.+.++.+...|++|+++.++.+..+...+.+..     .+....   .|-.+   ... +.+.. 
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~   96 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLD   96 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHHH
Confidence            578999999999999999999999999999988765443333333333     233221   23222   222 22110 


Q ss_pred             CCCCCcEEEECCC
Q psy2960         280 SIPKPKLALNCVG  292 (405)
Q Consensus       280 ~g~g~Dvvld~~g  292 (405)
                      ..+++|++|++.|
T Consensus        97 ~~g~id~li~~Ag  109 (303)
T 1yxm_A           97 TFGKINFLVNNGG  109 (303)
T ss_dssp             HHSCCCEEEECCC
T ss_pred             HcCCCCEEEECCC
Confidence            0136899999998

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=97.03  E-value=0.0021  Score=57.33  Aligned_cols=76  Identities=16%  Similarity=0.110  Sum_probs=52.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Ch---hhHHH----HhhhcCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TE---EELRN----ISRDASIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~---~d~~~----i~~~t~g~  282 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.+.   ..+...+++....+   |-   ++...    +.+.  .+
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~--~g   79 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEG---AKAAAASIGKKARAIAADISDPGSVKALFAEIQAL--TG   79 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHH---HHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHH--HS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHH--CC
Confidence            57899999999999999999999999999988765433   23334455554332   22   22222    2222  24


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      ++|+++++.|.
T Consensus        80 ~id~lv~nAg~   90 (247)
T 3rwb_A           80 GIDILVNNASI   90 (247)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999983

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=97.03  E-value=0.002  Score=58.30  Aligned_cols=80  Identities=20%  Similarity=0.283  Sum_probs=52.6

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEe-cCCcchHHHHHHHHHcCCcEEe---Chh---hHHH----Hhhhc
Q psy2960         211 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIV-RNRDDIDKLKSYLKSLGADYVF---TEE---ELRN----ISRDA  279 (405)
Q Consensus       211 ~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~-~~~~~~~~~~~~~~~lg~~~v~---~~~---d~~~----i~~~t  279 (405)
                      ...+.+|||.||+|++|.+.++.+...|++|+++. ++.+..+...+.+.+.+....+   |-.   +...    +.+. 
T Consensus        23 m~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~-  101 (272)
T 4e3z_A           23 MSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQ-  101 (272)
T ss_dssp             -CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH-
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHh-
Confidence            45688999999999999999999999999998874 3333333334444555543322   322   2222    2222 


Q ss_pred             CCCCCcEEEECCC
Q psy2960         280 SIPKPKLALNCVG  292 (405)
Q Consensus       280 ~g~g~Dvvld~~g  292 (405)
                       .+++|++|++.|
T Consensus       102 -~g~id~li~nAg  113 (272)
T 4e3z_A          102 -FGRLDGLVNNAG  113 (272)
T ss_dssp             -HSCCCEEEECCC
T ss_pred             -CCCCCEEEECCC
Confidence             246899999987

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=97.02  E-value=0.0025  Score=57.36  Aligned_cols=83  Identities=10%  Similarity=0.155  Sum_probs=54.2

Q ss_pred             CCCCCEEEEeCCC--cHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe--Chh---hHHH-Hhhhc-CC
Q psy2960         211 LSPGDVVIQNGAN--SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEE---ELRN-ISRDA-SI  281 (405)
Q Consensus       211 ~~~g~~VLI~ga~--G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~--~~~---d~~~-i~~~t-~g  281 (405)
                      -.++++|||.||+  +++|.+.++.+...|++|+.+.++....+...+...+.+.-.++  |-.   +... +.+.. ..
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   90 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTHW   90 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHHc
Confidence            3468999999998  99999999999999999999887744333333343455532222  322   2222 22211 13


Q ss_pred             CCCcEEEECCCc
Q psy2960         282 PKPKLALNCVGG  293 (405)
Q Consensus       282 ~g~Dvvld~~g~  293 (405)
                      +++|++|++.|.
T Consensus        91 g~id~lv~nAg~  102 (271)
T 3ek2_A           91 DSLDGLVHSIGF  102 (271)
T ss_dssp             SCEEEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            479999999873

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.02  E-value=0.0022  Score=61.52  Aligned_cols=90  Identities=10%  Similarity=0.199  Sum_probs=64.7

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEEC
Q psy2960         211 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNC  290 (405)
Q Consensus       211 ~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~  290 (405)
                      .-.|.+|+|.|. |.+|..+++.++.+|++|+++-.+    +.+...+...|... .   +++++     -...|+|+.+
T Consensus       208 ~L~GktVgIiG~-G~IG~~vA~~Lka~Ga~Viv~D~~----p~~a~~A~~~G~~~-~---sL~ea-----l~~ADVVilt  273 (436)
T 3h9u_A          208 MIAGKTACVCGY-GDVGKGCAAALRGFGARVVVTEVD----PINALQAAMEGYQV-L---LVEDV-----VEEAHIFVTT  273 (436)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSC----HHHHHHHHHTTCEE-C---CHHHH-----TTTCSEEEEC
T ss_pred             cccCCEEEEEee-CHHHHHHHHHHHHCCCEEEEECCC----hhhhHHHHHhCCee-c---CHHHH-----HhhCCEEEEC
Confidence            347999999998 999999999999999998876432    23344455667642 2   23331     1257999998


Q ss_pred             CCchhH-H-HHHHhcccCCEEEEEec
Q psy2960         291 VGGNSA-T-NLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       291 ~g~~~~-~-~~~~~l~~~G~~v~~g~  314 (405)
                      .+...+ . ..++.|+++..++.+|.
T Consensus       274 ~gt~~iI~~e~l~~MK~gAIVINvgR  299 (436)
T 3h9u_A          274 TGNDDIITSEHFPRMRDDAIVCNIGH  299 (436)
T ss_dssp             SSCSCSBCTTTGGGCCTTEEEEECSS
T ss_pred             CCCcCccCHHHHhhcCCCcEEEEeCC
Confidence            886543 2 46888999999988873

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=97.01  E-value=0.0017  Score=58.56  Aligned_cols=79  Identities=16%  Similarity=0.172  Sum_probs=53.4

Q ss_pred             CCCEEEEeCCCc-HHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE----eChhh---HHH----HhhhcC
Q psy2960         213 PGDVVIQNGANS-ACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV----FTEEE---LRN----ISRDAS  280 (405)
Q Consensus       213 ~g~~VLI~ga~G-~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v----~~~~d---~~~----i~~~t~  280 (405)
                      .|+++||.||+| |+|.+.+..+...|++|+.+.++.+..++..+.+++.+...+    .|-.+   ...    +.+.  
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~--   98 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEK--   98 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHH--
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHH--
Confidence            588999999986 899999999999999999988776554444444444442222    23222   222    2222  


Q ss_pred             CCCCcEEEECCCc
Q psy2960         281 IPKPKLALNCVGG  293 (405)
Q Consensus       281 g~g~Dvvld~~g~  293 (405)
                      .+.+|++|++.|.
T Consensus        99 ~g~id~li~~Ag~  111 (266)
T 3o38_A           99 AGRLDVLVNNAGL  111 (266)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCCcEEEECCCc
Confidence            2468999999983

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=97.01  E-value=0.0021  Score=57.43  Aligned_cols=75  Identities=16%  Similarity=0.273  Sum_probs=48.9

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH-HhhhcC-CCCCcE
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDAS-IPKPKL  286 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t~-g~g~Dv  286 (405)
                      +++||.||+|++|.+.++.+...|++|+.+.++.+..   .+...+++....   .|-.|   ... +.+... .+++|+
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~   77 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERL---QELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDI   77 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTTTCCCCE
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence            3699999999999999999999999999887664332   223334443221   23332   333 322211 247999


Q ss_pred             EEECCC
Q psy2960         287 ALNCVG  292 (405)
Q Consensus       287 vld~~g  292 (405)
                      ++++.|
T Consensus        78 lvnnAg   83 (248)
T 3asu_A           78 LVNNAG   83 (248)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999987

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=97.01  E-value=0.0017  Score=59.00  Aligned_cols=80  Identities=15%  Similarity=0.175  Sum_probs=53.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t-~g~g~  284 (405)
                      .|++|||.||+|++|.+.+..+...|++|+.+.++.+..+...+.....+....   .|-.+   ... +.+.. ..+.+
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i  112 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDFGTI  112 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            578999999999999999998888899999998876654444444444454322   23222   222 22210 01368


Q ss_pred             cEEEECCC
Q psy2960         285 KLALNCVG  292 (405)
Q Consensus       285 Dvvld~~g  292 (405)
                      |++|++.|
T Consensus       113 d~li~~Ag  120 (279)
T 3ctm_A          113 DVFVANAG  120 (279)
T ss_dssp             SEEEECGG
T ss_pred             CEEEECCc
Confidence            99999886

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=97.01  E-value=0.00086  Score=59.42  Aligned_cols=75  Identities=19%  Similarity=0.178  Sum_probs=49.7

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE--E-eChh---hHHH----HhhhcCCCC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY--V-FTEE---ELRN----ISRDASIPK  283 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~--v-~~~~---d~~~----i~~~t~g~g  283 (405)
                      +.++||.||+|++|.+.+..+...|++|+.+.++.+..++.   ..+++...  + .|-.   +...    +.+.  .++
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~---~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~--~g~   77 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQ---ELLLGNAVIGIVADLAHHEDVDVAFAAAVEW--GGL   77 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH---HHHHGGGEEEEECCTTSHHHHHHHHHHHHHH--HCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH---HHHhcCCceEEECCCCCHHHHHHHHHHHHHh--cCC
Confidence            67899999999999999999999999999988765443222   22333221  1 2322   2222    2222  247


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|+++++.|.
T Consensus        78 id~lvnnAg~   87 (235)
T 3l6e_A           78 PELVLHCAGT   87 (235)
T ss_dssp             CSEEEEECCC
T ss_pred             CcEEEECCCC
Confidence            8999999884

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=97.00  E-value=0.0017  Score=60.34  Aligned_cols=80  Identities=16%  Similarity=0.215  Sum_probs=52.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEe---------cCCcchHHHHHHHHHcCCcEEeChhh---HHH-Hhhhc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIV---------RNRDDIDKLKSYLKSLGADYVFTEEE---LRN-ISRDA  279 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~---------~~~~~~~~~~~~~~~lg~~~v~~~~d---~~~-i~~~t  279 (405)
                      .|.++||.|++|++|.+.++.+...|++|+++.         ++.++.+...+.++..+...+.|..+   ... +.+..
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~~~~~~~~~~~~~   87 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTAL   87 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence            578999999999999999999999999998863         23333333334445556544454332   222 22211


Q ss_pred             -CCCCCcEEEECCC
Q psy2960         280 -SIPKPKLALNCVG  292 (405)
Q Consensus       280 -~g~g~Dvvld~~g  292 (405)
                       ..+++|++|++.|
T Consensus        88 ~~~g~iD~lVnnAG  101 (319)
T 1gz6_A           88 DTFGRIDVVVNNAG  101 (319)
T ss_dssp             HHTSCCCEEEECCC
T ss_pred             HHcCCCCEEEECCC
Confidence             1347999999987

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.00  E-value=0.0082  Score=48.34  Aligned_cols=95  Identities=9%  Similarity=0.012  Sum_probs=65.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe-ChhhHHHHhhhcCCCCCcEEEECC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~-~~~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                      -.++|+|.|+ |.+|...++.++..|.+++++..+    +++.+.+++.|...+. |..+.+.+.+ .+-.++|+++-++
T Consensus         6 ~~~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~----~~~~~~~~~~g~~~i~gd~~~~~~l~~-a~i~~ad~vi~~~   79 (140)
T 3fwz_A            6 ICNHALLVGY-GRVGSLLGEKLLASDIPLVVIETS----RTRVDELRERGVRAVLGNAANEEIMQL-AHLECAKWLILTI   79 (140)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHHHTTCCEEEEESC----HHHHHHHHHTTCEEEESCTTSHHHHHH-TTGGGCSEEEECC
T ss_pred             CCCCEEEECc-CHHHHHHHHHHHHCCCCEEEEECC----HHHHHHHHHcCCCEEECCCCCHHHHHh-cCcccCCEEEEEC
Confidence            3578999999 999999999999999999988644    3456777778886554 3333221222 2334689999999


Q ss_pred             CchhHHH----HHHhcccCCEEEEEe
Q psy2960         292 GGNSATN----LLRTLVSKGVMVTYG  313 (405)
Q Consensus       292 g~~~~~~----~~~~l~~~G~~v~~g  313 (405)
                      +.+....    .++.+.+..+++...
T Consensus        80 ~~~~~n~~~~~~a~~~~~~~~iiar~  105 (140)
T 3fwz_A           80 PNGYEAGEIVASARAKNPDIEIIARA  105 (140)
T ss_dssp             SCHHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred             CChHHHHHHHHHHHHHCCCCeEEEEE
Confidence            9765432    345566677766543

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=97.00  E-value=0.0024  Score=58.16  Aligned_cols=81  Identities=12%  Similarity=0.149  Sum_probs=51.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc-chHHHHHHHHHc-CCcEEe---Chh---hHHH-Hhhhc-CCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD-DIDKLKSYLKSL-GADYVF---TEE---ELRN-ISRDA-SIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~-~~~~~~~~~~~l-g~~~v~---~~~---d~~~-i~~~t-~g~  282 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.. ..+...+.+.+. +....+   |-.   +... +.+.. ..+
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  103 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADRFG  103 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHHCC
Confidence            5789999999999999999999999999998876332 223333333333 332221   322   2222 22211 134


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      ++|+++++.|.
T Consensus       104 ~iD~lv~nAg~  114 (281)
T 3v2h_A          104 GADILVNNAGV  114 (281)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999984

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=97.00  E-value=0.0021  Score=58.19  Aligned_cols=80  Identities=11%  Similarity=0.152  Sum_probs=50.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEec-CCcchHHHHHHHHHc-CCcEE---eC---h----hhHHH-Hhhhc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVR-NRDDIDKLKSYLKSL-GADYV---FT---E----EELRN-ISRDA  279 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~-~~~~~~~~~~~~~~l-g~~~v---~~---~----~d~~~-i~~~t  279 (405)
                      .|.++||.||+|++|.+.++.+...|++|+++.+ +.+..++..+.+.+. |....   .|   .    ++... +.+..
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   89 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSF   89 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHHHH
Confidence            4789999999999999999999999999999887 543333333333332 43322   13   2    22222 22110


Q ss_pred             -CCCCCcEEEECCC
Q psy2960         280 -SIPKPKLALNCVG  292 (405)
Q Consensus       280 -~g~g~Dvvld~~g  292 (405)
                       ..+++|++|++.|
T Consensus        90 ~~~g~id~lv~nAg  103 (276)
T 1mxh_A           90 RAFGRCDVLVNNAS  103 (276)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HhcCCCCEEEECCC
Confidence             1246999999998

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.00  E-value=0.00071  Score=59.87  Aligned_cols=96  Identities=9%  Similarity=0.078  Sum_probs=61.9

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcC-CcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEEECC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G-~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                      ..+|||.||+|++|.+.++.+...| ++|+++.++.++.+    .....+...+ .|..|.+.+.+..  .++|+||++.
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~----~~~~~~~~~~~~Dl~d~~~~~~~~--~~~D~vv~~a   96 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIH----KPYPTNSQIIMGDVLNHAALKQAM--QGQDIVYANL   96 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSC----SSCCTTEEEEECCTTCHHHHHHHH--TTCSEEEEEC
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhc----ccccCCcEEEEecCCCHHHHHHHh--cCCCEEEEcC
Confidence            3689999999999999999999999 89999887754321    1111122222 2434433333332  2689999999


Q ss_pred             CchhH----HHHHHhccc--CCEEEEEecc
Q psy2960         292 GGNSA----TNLLRTLVS--KGVMVTYGGM  315 (405)
Q Consensus       292 g~~~~----~~~~~~l~~--~G~~v~~g~~  315 (405)
                      |....    ...++.++.  .++||.++..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~iV~iSS~  126 (236)
T 3qvo_A           97 TGEDLDIQANSVIAAMKACDVKRLIFVLSL  126 (236)
T ss_dssp             CSTTHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCCchhHHHHHHHHHHHHcCCCEEEEEecc
Confidence            87543    234555544  3689998854

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=96.98  E-value=0.00097  Score=60.53  Aligned_cols=76  Identities=18%  Similarity=0.221  Sum_probs=50.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE-E--eChhh---HHH----HhhhcCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-V--FTEEE---LRN----ISRDASIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v--~~~~d---~~~----i~~~t~g~  282 (405)
                      .++++||.||+|++|.+.++.+...|++|+.+.++.+..   .+...+++... +  .|-.|   ...    +.+.  .+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~--~g  101 (272)
T 4dyv_A           27 GKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDAL---QETAAEIGDDALCVPTDVTDPDSVRALFTATVEK--FG  101 (272)
T ss_dssp             -CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHHH--HS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH---HHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHH--cC
Confidence            578999999999999999999999999999887664432   23334444321 2  23222   222    2222  24


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      ++|+++++.|.
T Consensus       102 ~iD~lVnnAg~  112 (272)
T 4dyv_A          102 RVDVLFNNAGT  112 (272)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999874

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=96.96  E-value=0.0024  Score=59.54  Aligned_cols=80  Identities=11%  Similarity=0.177  Sum_probs=50.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc-chHH----HHHHHHHcCCcEE---eChh---hHHH-Hhhhc-
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD-DIDK----LKSYLKSLGADYV---FTEE---ELRN-ISRDA-  279 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~-~~~~----~~~~~~~lg~~~v---~~~~---d~~~-i~~~t-  279 (405)
                      .++++||.||+|++|.+.++.+...|++|++++++.. ....    ..+.+...+.+..   .|-.   +... +.+.. 
T Consensus         4 ~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~   83 (324)
T 3u9l_A            4 SKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQIIG   83 (324)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999886521 1122    2233334444322   2322   2222 22211 


Q ss_pred             CCCCCcEEEECCC
Q psy2960         280 SIPKPKLALNCVG  292 (405)
Q Consensus       280 ~g~g~Dvvld~~g  292 (405)
                      ..+++|+++++.|
T Consensus        84 ~~g~iD~lVnnAG   96 (324)
T 3u9l_A           84 EDGRIDVLIHNAG   96 (324)
T ss_dssp             HHSCCSEEEECCC
T ss_pred             HcCCCCEEEECCC
Confidence            1247999999998

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=96.96  E-value=0.0017  Score=57.53  Aligned_cols=77  Identities=19%  Similarity=0.287  Sum_probs=51.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc-CCcEE-eChhhHHHHhhhc-CCCCCcEEEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADYV-FTEEELRNISRDA-SIPKPKLALN  289 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l-g~~~v-~~~~d~~~i~~~t-~g~g~Dvvld  289 (405)
                      .|.+|||.||+|++|.+.++.+...|++|+++.++.+..   .+...++ +...+ .|-.+.+.+.+.. ..+++|++++
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~   82 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDL---VSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVN   82 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHhccCCCcEEecCCCHHHHHHHHHHcCCCCEEEE
Confidence            578999999999999999999999999999888664332   1222233 33322 2433333333322 2346899999


Q ss_pred             CCC
Q psy2960         290 CVG  292 (405)
Q Consensus       290 ~~g  292 (405)
                      +.|
T Consensus        83 ~Ag   85 (244)
T 1cyd_A           83 NAA   85 (244)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            998

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=96.96  E-value=0.0032  Score=57.72  Aligned_cols=80  Identities=16%  Similarity=0.285  Sum_probs=51.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc-CCcEE---eChhh---HHH-Hhhh-cCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADYV---FTEEE---LRN-ISRD-ASIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l-g~~~v---~~~~d---~~~-i~~~-t~g~g  283 (405)
                      .|.+|||.||+|++|.+.+..+...|++|+++.++.+..+...+.+.+. +....   .|-.+   ... +.+. ...+.
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~  104 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGH  104 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999999887654433333333322 43322   23222   222 2221 11347


Q ss_pred             CcEEEECCC
Q psy2960         284 PKLALNCVG  292 (405)
Q Consensus       284 ~Dvvld~~g  292 (405)
                      +|++|++.|
T Consensus       105 id~li~~Ag  113 (302)
T 1w6u_A          105 PNIVINNAA  113 (302)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEECCC
Confidence            899999998

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=96.96  E-value=0.0026  Score=58.16  Aligned_cols=78  Identities=19%  Similarity=0.257  Sum_probs=52.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhhHHHHhhhcC-CCCCcEEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEELRNISRDAS-IPKPKLAL  288 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d~~~i~~~t~-g~g~Dvvl  288 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.++.   .+...+++....   .|-.|.+.+.+... -.++|+++
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~lv   91 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKG---EAAARTMAGQVEVRELDLQDLSSVRRFADGVSGADVLI   91 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHTTSSSEEEEEECCTTCHHHHHHHHHTCCCEEEEE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHH---HHHHHHhcCCeeEEEcCCCCHHHHHHHHHhcCCCCEEE
Confidence            589999999999999999999999999999998764332   233344543322   23333222222111 14789999


Q ss_pred             ECCCc
Q psy2960         289 NCVGG  293 (405)
Q Consensus       289 d~~g~  293 (405)
                      ++.|.
T Consensus        92 ~nAg~   96 (291)
T 3rd5_A           92 NNAGI   96 (291)
T ss_dssp             ECCCC
T ss_pred             ECCcC
Confidence            99983

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=96.96  E-value=0.0034  Score=56.89  Aligned_cols=79  Identities=13%  Similarity=0.140  Sum_probs=48.9

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE--eChhh---HHH-Hhhhc-CCCCCcEE
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV--FTEEE---LRN-ISRDA-SIPKPKLA  287 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v--~~~~d---~~~-i~~~t-~g~g~Dvv  287 (405)
                      +++||.||+|++|.+.++.+...|++|+.+.++.++.++..+.+...+.-..  .|-.|   ... +.+.. ..+++|++
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l  101 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGL  101 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGSSCCEE
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            7899999999999999999999999999988765432222222211111111  23322   222 22211 12468999


Q ss_pred             EECCCc
Q psy2960         288 LNCVGG  293 (405)
Q Consensus       288 ld~~g~  293 (405)
                      +++.|.
T Consensus       102 vnnAG~  107 (272)
T 2nwq_A          102 INNAGL  107 (272)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999873

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=96.95  E-value=0.0038  Score=58.04  Aligned_cols=102  Identities=16%  Similarity=0.111  Sum_probs=62.8

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH-cC--CcEE--eChhhHHHHhhhcCCCCCcE
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-LG--ADYV--FTEEELRNISRDASIPKPKL  286 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~-lg--~~~v--~~~~d~~~i~~~t~g~g~Dv  286 (405)
                      .++.+|||.||+|.+|...+..+...|.+|+++.++.+..+...+.+.. .+  ...+  .|-.|...+.+..  .++|+
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~--~~~d~   86 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVI--KGAAG   86 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTT--TTCSE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHH--cCCCE
Confidence            4678999999999999999999988999999998765432222222211 12  2222  2333322233332  27899


Q ss_pred             EEECCCchh---------------HHHHHHhcc---cCCEEEEEecc
Q psy2960         287 ALNCVGGNS---------------ATNLLRTLV---SKGVMVTYGGM  315 (405)
Q Consensus       287 vld~~g~~~---------------~~~~~~~l~---~~G~~v~~g~~  315 (405)
                      ||.+.+...               ....++.+.   ..++++.++..
T Consensus        87 vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~  133 (342)
T 1y1p_A           87 VAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSST  133 (342)
T ss_dssp             EEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCG
T ss_pred             EEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccH
Confidence            999987321               122344443   23799998863

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.94  E-value=0.0018  Score=57.29  Aligned_cols=38  Identities=24%  Similarity=0.394  Sum_probs=33.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD  250 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~  250 (405)
                      .|.++||.||+|++|.+.++.+...|++|+++.++.+.
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~   39 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAND   39 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccc
Confidence            36789999999999999999999999999998876543

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=96.94  E-value=0.0013  Score=58.95  Aligned_cols=76  Identities=18%  Similarity=0.235  Sum_probs=47.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE-E--eChh---hHHH----HhhhcCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-V--FTEE---ELRN----ISRDASIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v--~~~~---d~~~----i~~~t~g~  282 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.+..++   ...+++... .  .|-.   +...    +.+.  .+
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~---~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~--~g   80 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEE---PAAELGAAVRFRNADVTNEADATAALAFAKQE--FG   80 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC---------------CEEEECCTTCHHHHHHHHHHHHHH--HS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHH---HHHHhCCceEEEEccCCCHHHHHHHHHHHHHH--cC
Confidence            57899999999999999999999999999999877654322   223334321 1  2322   2222    2222  24


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      ++|+++++.|.
T Consensus        81 ~id~lv~nAg~   91 (257)
T 3tpc_A           81 HVHGLVNCAGT   91 (257)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            69999999883

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=96.94  E-value=0.0017  Score=59.09  Aligned_cols=78  Identities=15%  Similarity=0.224  Sum_probs=52.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHH-HcCCcEEe---Chhh---HHH----HhhhcCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGADYVF---TEEE---LRN----ISRDASI  281 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~-~lg~~~v~---~~~d---~~~----i~~~t~g  281 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.+..++..+.+. ..|....+   |-.+   ...    +.+.  .
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~--~  103 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKE--F  103 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHH--c
Confidence            68999999999999999999999999999998876554333333332 23443222   3222   222    2222  2


Q ss_pred             CCCcEEEECCC
Q psy2960         282 PKPKLALNCVG  292 (405)
Q Consensus       282 ~g~Dvvld~~g  292 (405)
                      +++|+++++.|
T Consensus       104 g~id~lv~nAg  114 (277)
T 4fc7_A          104 GRIDILINCAA  114 (277)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            47999999998

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=96.94  E-value=0.001  Score=60.46  Aligned_cols=78  Identities=15%  Similarity=0.210  Sum_probs=52.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t-~g~g~  284 (405)
                      .+++|||.||+|++|.+.++.+...|++|+++.++.+..+   +...+++....   .|-.+   ... +.+.. ..+++
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i   80 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALD---DLVAAYPDRAEAISLDVTDGERIDVVAADVLARYGRV   80 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGH---HHHHHCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHhccCCceEEEeeCCCHHHHHHHHHHHHHhCCCC
Confidence            4689999999999999999999999999999988765533   33334443322   23222   222 21110 12469


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        81 d~lv~~Ag~   89 (281)
T 3m1a_A           81 DVLVNNAGR   89 (281)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999983

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.94  E-value=0.0026  Score=56.58  Aligned_cols=77  Identities=12%  Similarity=0.236  Sum_probs=51.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhh---HHH-Hhhhc-CCCCCcE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEE---LRN-ISRDA-SIPKPKL  286 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d---~~~-i~~~t-~g~g~Dv  286 (405)
                      .|+++||.||+|++|.+.++.+...|++|+++.++.++.   .+...++|...+ .|-.|   ... +.+.. ..+++|+
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~   80 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPL---REAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDG   80 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHHcCCEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            478999999999999999999999999999988654322   233344564332 23322   222 22110 1246899


Q ss_pred             EEECCC
Q psy2960         287 ALNCVG  292 (405)
Q Consensus       287 vld~~g  292 (405)
                      ++++.|
T Consensus        81 lvn~Ag   86 (245)
T 1uls_A           81 VVHYAG   86 (245)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999998

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=96.92  E-value=0.0011  Score=59.53  Aligned_cols=75  Identities=17%  Similarity=0.263  Sum_probs=51.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Chh---hHHH----HhhhcCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEE---ELRN----ISRDASIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~---d~~~----i~~~t~g~  282 (405)
                      .|+++||.||++++|.+.++.+...|++|+.+.++.++.   .+...+++....+   |-.   +...    +.+.  ..
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~--~g   82 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGA---ERVAGEIGDAALAVAADISKEADVDAAVEAALSK--FG   82 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHH--HS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHH---HHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHh--cC
Confidence            578999999999999999999999999999988665432   2333455543222   322   2222    2222  24


Q ss_pred             CCcEEEECCC
Q psy2960         283 KPKLALNCVG  292 (405)
Q Consensus       283 g~Dvvld~~g  292 (405)
                      ++|+++++.|
T Consensus        83 ~id~li~~Ag   92 (261)
T 3n74_A           83 KVDILVNNAG   92 (261)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCc
Confidence            6899999987

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=96.91  E-value=0.0041  Score=58.27  Aligned_cols=98  Identities=19%  Similarity=0.159  Sum_probs=63.3

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHH---HHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEEE
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK---SYLKSLGADYV-FTEEELRNISRDASIPKPKLALN  289 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~---~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld  289 (405)
                      ..+|||.||+|.+|...++.+...|.+|++++++.+....+.   +.+...+...+ .|..|.+.+.+.....++|+||.
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~   89 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVS   89 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEEE
Confidence            358999999999999999999999999999998763222222   33445566554 24444333333222237999999


Q ss_pred             CCCchh---HHHHHHhcccCC---EEEE
Q psy2960         290 CVGGNS---ATNLLRTLVSKG---VMVT  311 (405)
Q Consensus       290 ~~g~~~---~~~~~~~l~~~G---~~v~  311 (405)
                      +.+...   ....++.++..|   +|+.
T Consensus        90 ~a~~~n~~~~~~l~~aa~~~g~v~~~v~  117 (346)
T 3i6i_A           90 TVGGESILDQIALVKAMKAVGTIKRFLP  117 (346)
T ss_dssp             CCCGGGGGGHHHHHHHHHHHCCCSEEEC
T ss_pred             CCchhhHHHHHHHHHHHHHcCCceEEee
Confidence            998632   234455555544   6653

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=96.91  E-value=0.0011  Score=60.29  Aligned_cols=77  Identities=14%  Similarity=0.209  Sum_probs=51.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChh---hHHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEE---ELRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~---d~~~-i~~~t-~g~g~  284 (405)
                      .|+++||.||+|++|.+.++.+...|++|+++.++.+..   .+...+++....   .|-.   +... +.+.. ..+++
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  102 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAA---VRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAKWGRV  102 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHH---HHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            578999999999999999999999999999887664332   233344554332   2322   2222 22111 12468


Q ss_pred             cEEEECCC
Q psy2960         285 KLALNCVG  292 (405)
Q Consensus       285 Dvvld~~g  292 (405)
                      |+++++.|
T Consensus       103 D~lv~nAg  110 (277)
T 4dqx_A          103 DVLVNNAG  110 (277)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999998

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=96.91  E-value=0.0025  Score=56.49  Aligned_cols=39  Identities=18%  Similarity=0.179  Sum_probs=33.9

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcc
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD  250 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~  250 (405)
                      ..++++||.|++|++|.+.++.+...|++|+++.++.+.
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~   43 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENE   43 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhh
Confidence            457899999999999999999999999999998876543

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=96.90  E-value=0.009  Score=55.97  Aligned_cols=79  Identities=9%  Similarity=0.076  Sum_probs=51.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHH-H------cCCcEE-eChhhHHHHhhhcCCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-S------LGADYV-FTEEELRNISRDASIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~-~------lg~~~v-~~~~d~~~i~~~t~g~g~  284 (405)
                      .+.+|||.||+|.+|...++.+...|.+|+++.++.......++.+. .      -+...+ .|..|.+.+.+...  ++
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~--~~  103 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA--GV  103 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT--TC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhc--CC
Confidence            35789999999999999999999999999999876543222222221 1      122222 24334333333322  78


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+||++.|.
T Consensus       104 d~vih~A~~  112 (352)
T 1sb8_A          104 DYVLHQAAL  112 (352)
T ss_dssp             SEEEECCSC
T ss_pred             CEEEECCcc
Confidence            999999983

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=96.90  E-value=0.0045  Score=57.20  Aligned_cols=95  Identities=12%  Similarity=0.164  Sum_probs=61.4

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC-c----chHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEE
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR-D----DIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLA  287 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~-~----~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvv  287 (405)
                      ..+|||.||+|.+|...++.+...|.+|++++++. +    .....+..+...+...+ .|..|.+.+.+..  .++|+|
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~--~~~d~v   81 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVL--KQVDIV   81 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHH--TTCSEE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHH--cCCCEE
Confidence            35799999999999999999988999999998875 1    11122222334566544 3555544344443  358999


Q ss_pred             EECCCch---hHHHHHHhcccC---CEEE
Q psy2960         288 LNCVGGN---SATNLLRTLVSK---GVMV  310 (405)
Q Consensus       288 ld~~g~~---~~~~~~~~l~~~---G~~v  310 (405)
                      |.+++..   .....++.+...   ++|+
T Consensus        82 i~~a~~~~~~~~~~l~~aa~~~g~v~~~v  110 (321)
T 3c1o_A           82 ISALPFPMISSQIHIINAIKAAGNIKRFL  110 (321)
T ss_dssp             EECCCGGGSGGGHHHHHHHHHHCCCCEEE
T ss_pred             EECCCccchhhHHHHHHHHHHhCCccEEe
Confidence            9999853   223445554443   4776

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=96.90  E-value=0.0012  Score=59.50  Aligned_cols=77  Identities=12%  Similarity=0.146  Sum_probs=49.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc-EE--eChhh---HHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YV--FTEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~-~v--~~~~d---~~~-i~~~t-~g~g~  284 (405)
                      .|+++||.||+|++|.+.++.+...|++|+++.++.++.+   +...+++.. ..  .|-.+   ... +.+.. ..+++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   82 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGK---AMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGL   82 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH---HHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHHHHhhcCceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999999999999999999899999999886643322   222333322 11  23222   222 22111 02369


Q ss_pred             cEEEECCC
Q psy2960         285 KLALNCVG  292 (405)
Q Consensus       285 Dvvld~~g  292 (405)
                      |+++++.|
T Consensus        83 D~lv~~Ag   90 (260)
T 1nff_A           83 HVLVNNAG   90 (260)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999987

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=96.89  E-value=0.0011  Score=60.02  Aligned_cols=78  Identities=14%  Similarity=0.244  Sum_probs=50.3

Q ss_pred             CCCEEEEeCC--CcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc--EE-eChhh---HHH----HhhhcC
Q psy2960         213 PGDVVIQNGA--NSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YV-FTEEE---LRN----ISRDAS  280 (405)
Q Consensus       213 ~g~~VLI~ga--~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~--~v-~~~~d---~~~----i~~~t~  280 (405)
                      .|+++||.|+  +|++|.+.++.+...|++|+.+.++.++.  ..+...+++..  .+ .|-.+   ...    +.+..+
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~--~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   83 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRL--IQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIG   83 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHH--HHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHH--HHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHHhC
Confidence            5789999998  89999999999999999999887664321  12233344432  22 23322   222    222221


Q ss_pred             -CCCCcEEEECCC
Q psy2960         281 -IPKPKLALNCVG  292 (405)
Q Consensus       281 -g~g~Dvvld~~g  292 (405)
                       +.++|+++++.|
T Consensus        84 ~~~~iD~lv~nAg   96 (269)
T 2h7i_A           84 AGNKLDGVVHSIG   96 (269)
T ss_dssp             TTCCEEEEEECCC
T ss_pred             CCCCceEEEECCc
Confidence             127999999987

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=96.88  E-value=0.00088  Score=59.65  Aligned_cols=75  Identities=7%  Similarity=0.050  Sum_probs=49.6

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEE-e--cCCcchHHHHHHHHHc-CCcEEeChhhHHH-Hhhhc-CCCCCcEE
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINI-V--RNRDDIDKLKSYLKSL-GADYVFTEEELRN-ISRDA-SIPKPKLA  287 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~-~--~~~~~~~~~~~~~~~l-g~~~v~~~~d~~~-i~~~t-~g~g~Dvv  287 (405)
                      |+++||.|++|++|.+.++.+...|++|+.+ .  ++.+..   .+...++ +. .+.+.++... +.+.. ..+++|++
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~---~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~g~iD~l   76 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAER---QRFESENPGT-IALAEQKPERLVDATLQHGEAIDTI   76 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHH---HHHHHHSTTE-EECCCCCGGGHHHHHGGGSSCEEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHH---HHHHHHhCCC-cccCHHHHHHHHHHHHHHcCCCCEE
Confidence            4689999999999999999999999999887 4  554332   2223344 43 3445544333 22221 12468999


Q ss_pred             EECCC
Q psy2960         288 LNCVG  292 (405)
Q Consensus       288 ld~~g  292 (405)
                      +++.|
T Consensus        77 v~~Ag   81 (244)
T 1zmo_A           77 VSNDY   81 (244)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99987

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=96.88  E-value=0.0034  Score=56.98  Aligned_cols=76  Identities=16%  Similarity=0.188  Sum_probs=51.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Chhh---HHH-HhhhcCCCCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEEE---LRN-ISRDASIPKPK  285 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~d---~~~-i~~~t~g~g~D  285 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.++.   .+...+++....+   |-.+   ... +.+.....++|
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~---~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~id  105 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKG---KALADELGNRAEFVSTNVTSEDSVLAAIEAANQLGRLR  105 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHHHCTTEEEEECCTTCHHHHHHHHHHHTTSSEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHH---HHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhCCCC
Confidence            578999999999999999999999999999888664432   2334445543222   3222   333 33332234689


Q ss_pred             EEEECC
Q psy2960         286 LALNCV  291 (405)
Q Consensus       286 vvld~~  291 (405)
                      +++++.
T Consensus       106 ~lv~~a  111 (281)
T 3ppi_A          106 YAVVAH  111 (281)
T ss_dssp             EEEECC
T ss_pred             eEEEcc
Confidence            999883

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=96.87  E-value=0.0035  Score=57.39  Aligned_cols=51  Identities=16%  Similarity=0.145  Sum_probs=38.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEe-cCCcchHHHHHHHH-HcCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIV-RNRDDIDKLKSYLK-SLGA  263 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~-~~~~~~~~~~~~~~-~lg~  263 (405)
                      .|.++||.|++|++|.+.++.+...|++|+.+. ++.+..++..+.++ +.|.
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~~   60 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPN   60 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcCC
Confidence            578999999999999999999999999999988 66544333333333 3443

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=96.87  E-value=0.0025  Score=56.65  Aligned_cols=79  Identities=13%  Similarity=0.156  Sum_probs=49.2

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHH-HHcCCcEE---eChhh---HHH-Hhhhc-CCCCC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYV---FTEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~-~~lg~~~v---~~~~d---~~~-i~~~t-~g~g~  284 (405)
                      +.++||.||+|++|.+.+..+...|++|+++.++.+..++..+.+ .+.+....   .|-.+   ... +.+.. ..+++
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   81 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGAI   81 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            578999999999999999999999999999887654322222222 22233221   23222   222 22110 02468


Q ss_pred             cEEEECCC
Q psy2960         285 KLALNCVG  292 (405)
Q Consensus       285 Dvvld~~g  292 (405)
                      |++|++.|
T Consensus        82 d~li~~Ag   89 (250)
T 2cfc_A           82 DVLVNNAG   89 (250)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999987

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=96.87  E-value=0.0073  Score=53.78  Aligned_cols=73  Identities=14%  Similarity=0.077  Sum_probs=49.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhh---HHH-Hhhhc-CCCCCcE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEE---LRN-ISRDA-SIPKPKL  286 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d---~~~-i~~~t-~g~g~Dv  286 (405)
                      .|+++||.|++|++|.+.++.+...|++|+++.++.+.        .+.+...+ .|-.|   ... +.+.. ..+++|+
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~--------~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~   77 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ--------EQYPFATEVMDVADAAQVAQVCQRLLAETERLDA   77 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCS--------SCCSSEEEECCTTCHHHHHHHHHHHHHHCSCCCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhh--------hcCCceEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            47899999999999999999999999999998876542        12333222 23322   222 22211 1347999


Q ss_pred             EEECCCc
Q psy2960         287 ALNCVGG  293 (405)
Q Consensus       287 vld~~g~  293 (405)
                      ++++.|.
T Consensus        78 lv~~Ag~   84 (250)
T 2fwm_X           78 LVNAAGI   84 (250)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9999873

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=96.86  E-value=0.004  Score=62.01  Aligned_cols=84  Identities=12%  Similarity=0.084  Sum_probs=56.3

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEe--cCC-------------cchHHHHHHHHHcCCcEEe---Chhh
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIV--RNR-------------DDIDKLKSYLKSLGADYVF---TEEE  271 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~--~~~-------------~~~~~~~~~~~~lg~~~v~---~~~d  271 (405)
                      .++++.++||.||+|++|...++.+...|+++++.+  ++.             +..++..+.+.+.|....+   |-.|
T Consensus       247 ~~~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd  326 (525)
T 3qp9_A          247 WWQADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTD  326 (525)
T ss_dssp             SSCTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTS
T ss_pred             eecCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCC
Confidence            467899999999999999999988888899866665  331             2334455556667765433   3222


Q ss_pred             ---HHH-HhhhcCCCCCcEEEECCCc
Q psy2960         272 ---LRN-ISRDASIPKPKLALNCVGG  293 (405)
Q Consensus       272 ---~~~-i~~~t~g~g~Dvvld~~g~  293 (405)
                         ... +.+......+|.||++.|.
T Consensus       327 ~~~v~~~~~~i~~~g~id~vVh~AGv  352 (525)
T 3qp9_A          327 AEAAARLLAGVSDAHPLSAVLHLPPT  352 (525)
T ss_dssp             HHHHHHHHHTSCTTSCEEEEEECCCC
T ss_pred             HHHHHHHHHHHHhcCCCcEEEECCcC
Confidence               333 3333234578999999983

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=96.86  E-value=0.0018  Score=58.13  Aligned_cols=77  Identities=18%  Similarity=0.254  Sum_probs=51.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t-~g~g~  284 (405)
                      .|.+|||.||+|++|.+.++.+...|++|+++.++.+..++   ...+++....   .|-.+   ... +.+.. ..+++
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~---~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   87 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEA---QAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRV   87 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHH---HHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHH---HHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCC
Confidence            57899999999999999999999999999999887655332   2334454322   23222   222 22110 02369


Q ss_pred             cEEEECCC
Q psy2960         285 KLALNCVG  292 (405)
Q Consensus       285 Dvvld~~g  292 (405)
                      |++|++.|
T Consensus        88 d~li~~Ag   95 (265)
T 2o23_A           88 DVAVNCAG   95 (265)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCc
Confidence            99999987

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.85  E-value=0.0019  Score=57.86  Aligned_cols=75  Identities=16%  Similarity=0.214  Sum_probs=50.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe--Chh---hHHH-Hhhhc-CCCCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEE---ELRN-ISRDA-SIPKPK  285 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~--~~~---d~~~-i~~~t-~g~g~D  285 (405)
                      .|+++||.||+|++|.+.++.+...|++|+++.++.+. ++   ...+++. .++  |-.   +... +.+.. ..+++|
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~---~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g~iD   79 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KE---VAEAIGG-AFFQVDLEDERERVRFVEEAAYALGRVD   79 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HH---HHHHHTC-EEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HH---HHHHhhC-CEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence            47899999999999999999999999999998877554 22   2233322 332  322   2222 22110 124689


Q ss_pred             EEEECCC
Q psy2960         286 LALNCVG  292 (405)
Q Consensus       286 vvld~~g  292 (405)
                      +++++.|
T Consensus        80 ~lv~~Ag   86 (256)
T 2d1y_A           80 VLVNNAA   86 (256)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999987

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=96.85  E-value=0.0049  Score=54.52  Aligned_cols=74  Identities=15%  Similarity=0.214  Sum_probs=48.9

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChh--hHHH-Hhhhc-CCCCCcEEE
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEE--ELRN-ISRDA-SIPKPKLAL  288 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~--d~~~-i~~~t-~g~g~Dvvl  288 (405)
                      ++++||.||+|++|.+.++.+...|++|+.+.++.++      ...++|...+ .|-.  +... +.+.. .-+++|+++
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~g~id~lv   75 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE------AAQSLGAVPLPTDLEKDDPKGLVKRALEALGGLHVLV   75 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH------HHHHHTCEEEECCTTTSCHHHHHHHHHHHHTSCCEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH------HHHhhCcEEEecCCchHHHHHHHHHHHHHcCCCCEEE
Confidence            5789999999999999999999999999998876532      1223353322 2322  2222 22111 024689999


Q ss_pred             ECCCc
Q psy2960         289 NCVGG  293 (405)
Q Consensus       289 d~~g~  293 (405)
                      ++.|.
T Consensus        76 ~~Ag~   80 (239)
T 2ekp_A           76 HAAAV   80 (239)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            99873

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=96.85  E-value=0.0026  Score=56.67  Aligned_cols=73  Identities=15%  Similarity=0.097  Sum_probs=48.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh---HHH-Hhhhc-CCCCCcEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE---LRN-ISRDA-SIPKPKLA  287 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d---~~~-i~~~t-~g~g~Dvv  287 (405)
                      .|++|||.|++|++|.+.++.+...|++|+++.++.+..++    +.  +  ...|-.|   ... +.+.. ..+++|++
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~----~~--~--~~~D~~~~~~~~~~~~~~~~~~g~id~l   85 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPKG----LF--G--VEVDVTDSDAVDRAFTAVEEHQGPVEVL   85 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTT----SE--E--EECCTTCHHHHHHHHHHHHHHHSSCSEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHH----hc--C--eeccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            57899999999999999999999999999999876543211    10  1  2234322   222 22110 02468999


Q ss_pred             EECCCc
Q psy2960         288 LNCVGG  293 (405)
Q Consensus       288 ld~~g~  293 (405)
                      +++.|.
T Consensus        86 v~~Ag~   91 (247)
T 1uzm_A           86 VSNAGL   91 (247)
T ss_dssp             EEECSC
T ss_pred             EECCCC
Confidence            999874

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=96.84  E-value=0.0037  Score=55.36  Aligned_cols=79  Identities=14%  Similarity=0.124  Sum_probs=50.0

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCC-------cEEEEecCCcchHHHHHHHHHcCCcEE---eChhh---HHH-Hhhhc
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGL-------KTINIVRNRDDIDKLKSYLKSLGADYV---FTEEE---LRN-ISRDA  279 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~-------~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~d---~~~-i~~~t  279 (405)
                      +++|||.||+|++|.+.++.+...|+       +|+.+.++.+..+...+.+...+....   .|-.+   ... +.+..
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   81 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV   81 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHHH
Confidence            57899999999999999998888899       788887665433333333333343221   23222   222 22211


Q ss_pred             -CCCCCcEEEECCC
Q psy2960         280 -SIPKPKLALNCVG  292 (405)
Q Consensus       280 -~g~g~Dvvld~~g  292 (405)
                       ..+++|++|++.|
T Consensus        82 ~~~g~id~li~~Ag   95 (244)
T 2bd0_A           82 ERYGHIDCLVNNAG   95 (244)
T ss_dssp             HHTSCCSEEEECCC
T ss_pred             HhCCCCCEEEEcCC
Confidence             1246999999987

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=96.83  E-value=0.0017  Score=57.72  Aligned_cols=96  Identities=15%  Similarity=0.231  Sum_probs=64.0

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eCh---hhHHH-HhhhcCCCCC
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTE---EELRN-ISRDASIPKP  284 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~---~d~~~-i~~~t~g~g~  284 (405)
                      =.|+++||.|+++|+|.+.++.....|++|+++.++.+..+    .  ..+....   .|-   ++..+ +.+   -+++
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~----~--~~~~~~~~~~~Dv~~~~~v~~~~~~---~g~i   79 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVH----A--PRHPRIRREELDITDSQRLQRLFEA---LPRL   79 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTT----S--CCCTTEEEEECCTTCHHHHHHHHHH---CSCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHh----h--hhcCCeEEEEecCCCHHHHHHHHHh---cCCC
Confidence            36999999999999999999999999999999887655421    1  1122211   232   22333 433   2579


Q ss_pred             cEEEECCCch------------------------hHHHHHHhcc-cCCEEEEEeccC
Q psy2960         285 KLALNCVGGN------------------------SATNLLRTLV-SKGVMVTYGGMS  316 (405)
Q Consensus       285 Dvvld~~g~~------------------------~~~~~~~~l~-~~G~~v~~g~~~  316 (405)
                      |+++|+.|..                        ..+.++..|+ ++|+||.+++..
T Consensus        80 DiLVNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~~  136 (242)
T 4b79_A           80 DVLVNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASMY  136 (242)
T ss_dssp             SEEEECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCGG
T ss_pred             CEEEECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence            9999999831                        0122344453 589999998653

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=96.83  E-value=0.0034  Score=52.39  Aligned_cols=103  Identities=13%  Similarity=0.130  Sum_probs=63.8

Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCc-EEeChhhHHH-HhhhcCCCC
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGAD-YVFTEEELRN-ISRDASIPK  283 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~-~v~~~~d~~~-i~~~t~g~g  283 (405)
                      ....++++++||-.|+ | .|..+..+++.. +++++++--+++..+...+.+...|.+ .++-..|..+ +...  ...
T Consensus        19 ~~~~~~~~~~vldiG~-G-~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~   94 (178)
T 3hm2_A           19 SALAPKPHETLWDIGG-G-SGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDV--PDN   94 (178)
T ss_dssp             HHHCCCTTEEEEEEST-T-TTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGC--CSC
T ss_pred             HHhcccCCCeEEEeCC-C-CCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhcc--CCC
Confidence            3357889999999998 4 499999999987 556666643333323333334455654 2321122212 2221  257


Q ss_pred             CcEEEECCCch---hHHHHHHhcccCCEEEEEe
Q psy2960         284 PKLALNCVGGN---SATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       284 ~Dvvld~~g~~---~~~~~~~~l~~~G~~v~~g  313 (405)
                      +|+|+......   .+..+.+.|+++|+++...
T Consensus        95 ~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  127 (178)
T 3hm2_A           95 PDVIFIGGGLTAPGVFAAAWKRLPVGGRLVANA  127 (178)
T ss_dssp             CSEEEECC-TTCTTHHHHHHHTCCTTCEEEEEE
T ss_pred             CCEEEECCcccHHHHHHHHHHhcCCCCEEEEEe
Confidence            99999765443   3566789999999998764

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=96.83  E-value=0.0075  Score=54.26  Aligned_cols=71  Identities=18%  Similarity=0.200  Sum_probs=47.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChh---hHHH-Hhhhc-CCCCCcE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEE---ELRN-ISRDA-SIPKPKL  286 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~---d~~~-i~~~t-~g~g~Dv  286 (405)
                      .|.+|||.||+|++|.+.++.+...|++|+++.++.+.         ......+ .|-.   +... +.+.. ..+++|+
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~---------~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~   77 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG---------EAKYDHIECDVTNPDQVKASIDHIFKEYGSISV   77 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC---------SCSSEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc---------CCceEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            47899999999999999999999999999998876542         1112222 2322   2222 22111 0246999


Q ss_pred             EEECCC
Q psy2960         287 ALNCVG  292 (405)
Q Consensus       287 vld~~g  292 (405)
                      ++++.|
T Consensus        78 lv~~Ag   83 (264)
T 2dtx_A           78 LVNNAG   83 (264)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999987

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=96.83  E-value=0.0012  Score=59.41  Aligned_cols=77  Identities=12%  Similarity=0.109  Sum_probs=49.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcC--CcEE-eChhh---HHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG--ADYV-FTEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg--~~~v-~~~~d---~~~-i~~~t-~g~g~  284 (405)
                      .|.++||.||+|++|.+.+..+...|++|+++.++.+..   .+...++.  ...+ .|-.|   ... +.+.. ..+++
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~i   87 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAA---QAVVAGLENGGFAVEVDVTKRASVDAAMQKAIDALGGF   87 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHHHHTCC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence            578999999999999999999999999999887654322   22233342  2222 23222   222 22110 02368


Q ss_pred             cEEEECCC
Q psy2960         285 KLALNCVG  292 (405)
Q Consensus       285 Dvvld~~g  292 (405)
                      |+++++.|
T Consensus        88 D~lv~~Ag   95 (263)
T 3ak4_A           88 DLLCANAG   95 (263)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999987

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.82  E-value=0.0027  Score=55.49  Aligned_cols=94  Identities=12%  Similarity=0.179  Sum_probs=60.0

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEEECCCc
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALNCVGG  293 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld~~g~  293 (405)
                      .+|||.||+|.+|...++.+...|.+|+++.++.++.+.    + .-+...+ .|..|.+.+.+..  .++|+||.+.|.
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~-~~~~~~~~~Dl~d~~~~~~~~--~~~d~vi~~a~~   77 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKI----E-NEHLKVKKADVSSLDEVCEVC--KGADAVISAFNP   77 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCC----C-CTTEEEECCCTTCHHHHHHHH--TTCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchh----c-cCceEEEEecCCCHHHHHHHh--cCCCEEEEeCcC
Confidence            589999999999999999999999999999877543210    0 0122222 1333333333332  268999999985


Q ss_pred             h------------hHHHHHHhcccC--CEEEEEecc
Q psy2960         294 N------------SATNLLRTLVSK--GVMVTYGGM  315 (405)
Q Consensus       294 ~------------~~~~~~~~l~~~--G~~v~~g~~  315 (405)
                      .            .....++.+++.  ++|+.++..
T Consensus        78 ~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~  113 (227)
T 3dhn_A           78 GWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGA  113 (227)
T ss_dssp             ------CCSHHHHHHHHHHHHHHHTTCSEEEEECCS
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCCh
Confidence            3            112344555544  489988753

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=96.80  E-value=0.004  Score=58.06  Aligned_cols=40  Identities=15%  Similarity=0.156  Sum_probs=34.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEe-cCCcchH
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIV-RNRDDID  252 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~-~~~~~~~  252 (405)
                      .|.++||.||+|++|.+.++.+...|++|+++. ++.+..+
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~   85 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEAN   85 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHH
Confidence            578999999999999999999999999999988 6654433

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=96.79  E-value=0.0033  Score=56.77  Aligned_cols=79  Identities=15%  Similarity=0.234  Sum_probs=50.6

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcc-hHHHHHHHHHcCCcE-E--eChhh---HHH----HhhhcC
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYLKSLGADY-V--FTEEE---LRN----ISRDAS  280 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~-~~~~~~~~~~lg~~~-v--~~~~d---~~~----i~~~t~  280 (405)
                      ..++++||.||+|++|.+.++.+...|++|+++.+.... .+...+.....+... +  .|-.|   ...    +.+.  
T Consensus        23 ~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~--  100 (269)
T 3gk3_A           23 QAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLAD--  100 (269)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHH--
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHH--
Confidence            357899999999999999999999999999888744332 222233333444322 2  23222   222    2222  


Q ss_pred             CCCCcEEEECCC
Q psy2960         281 IPKPKLALNCVG  292 (405)
Q Consensus       281 g~g~Dvvld~~g  292 (405)
                      .+++|++|++.|
T Consensus       101 ~g~id~li~nAg  112 (269)
T 3gk3_A          101 FGKVDVLINNAG  112 (269)
T ss_dssp             HSCCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            236899999987

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.78  E-value=0.0057  Score=56.05  Aligned_cols=94  Identities=13%  Similarity=0.235  Sum_probs=60.6

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC-------cchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCc
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR-------DDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPK  285 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~-------~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~D  285 (405)
                      +.+|||.||+|.+|...++.+...|.+|++++++.       ++ ...++.+...|...+ .|..|.+.+.+..  .++|
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~-~~~~~~l~~~~v~~v~~D~~d~~~l~~~~--~~~d   78 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETK-EELIDNYQSLGVILLEGDINDHETLVKAI--KQVD   78 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHH-HHHHHHHHHTTCEEEECCTTCHHHHHHHH--TTCS
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHH-HHHHHHHHhCCCEEEEeCCCCHHHHHHHH--hCCC
Confidence            46799999999999999999888899999998775       21 112223334566544 3444443343332  2689


Q ss_pred             EEEECCCch---hHHHHHHhcccC---CEEE
Q psy2960         286 LALNCVGGN---SATNLLRTLVSK---GVMV  310 (405)
Q Consensus       286 vvld~~g~~---~~~~~~~~l~~~---G~~v  310 (405)
                      +||++++..   .....++.++..   ++|+
T Consensus        79 ~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v  109 (307)
T 2gas_A           79 IVICAAGRLLIEDQVKIIKAIKEAGNVKKFF  109 (307)
T ss_dssp             EEEECSSSSCGGGHHHHHHHHHHHCCCSEEE
T ss_pred             EEEECCcccccccHHHHHHHHHhcCCceEEe
Confidence            999999853   233445544433   4776

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=96.78  E-value=0.0066  Score=52.13  Aligned_cols=102  Identities=21%  Similarity=0.215  Sum_probs=64.1

Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcC-CcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHH-HhhhcCCCC
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRN-ISRDASIPK  283 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G-~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~-i~~~t~g~g  283 (405)
                      ....++++++||-.|+ | .|..++.+++..+ ++++++-.+++..+...+.++..|.+.+ +-..|..+ +..   ...
T Consensus        34 ~~l~~~~~~~vLDiG~-G-~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~  108 (204)
T 3e05_A           34 SKLRLQDDLVMWDIGA-G-SASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDD---LPD  108 (204)
T ss_dssp             HHTTCCTTCEEEEETC-T-TCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTT---SCC
T ss_pred             HHcCCCCCCEEEEECC-C-CCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhc---CCC
Confidence            4468899999999998 4 5889999999863 5666665443333333344444454322 11122212 211   246


Q ss_pred             CcEEEECCCc----hhHHHHHHhcccCCEEEEEe
Q psy2960         284 PKLALNCVGG----NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       284 ~Dvvld~~g~----~~~~~~~~~l~~~G~~v~~g  313 (405)
                      +|+|+.....    ..+..+.+.|+++|+++...
T Consensus       109 ~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  142 (204)
T 3e05_A          109 PDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNA  142 (204)
T ss_dssp             CSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEe
Confidence            9999987652    33456678999999999865

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.78  E-value=0.0031  Score=53.93  Aligned_cols=95  Identities=14%  Similarity=0.154  Sum_probs=60.3

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEEECCCc
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALNCVGG  293 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld~~g~  293 (405)
                      .+|||.||+|.+|...++.+...|.+|+++.++.++.+    .....+...+ .|..|.+.+.+..  .++|+||++.|.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~--~~~d~vi~~a~~   77 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLP----SEGPRPAHVVVGDVLQAADVDKTV--AGQDAVIVLLGT   77 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSC----SSSCCCSEEEESCTTSHHHHHHHH--TTCSEEEECCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcc----cccCCceEEEEecCCCHHHHHHHH--cCCCEEEECccC
Confidence            68999999999999999999999999999987654321    0001122222 2333433333332  358999999985


Q ss_pred             hh-----------HHHHHHhccc--CCEEEEEecc
Q psy2960         294 NS-----------ATNLLRTLVS--KGVMVTYGGM  315 (405)
Q Consensus       294 ~~-----------~~~~~~~l~~--~G~~v~~g~~  315 (405)
                      ..           ....++.+.+  .++++.++..
T Consensus        78 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~  112 (206)
T 1hdo_A           78 RNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSA  112 (206)
T ss_dssp             TTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred             CCCCCccchHHHHHHHHHHHHHHhCCCeEEEEeee
Confidence            32           2233444433  3689988754

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=96.78  E-value=0.0049  Score=55.21  Aligned_cols=80  Identities=16%  Similarity=0.128  Sum_probs=50.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH---cCCcEEEEecCCcchHHHHHHHHHc--CCcEE---eChhh---HHH-Hhhhc-
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARH---WGLKTINIVRNRDDIDKLKSYLKSL--GADYV---FTEEE---LRN-ISRDA-  279 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~---~G~~v~~~~~~~~~~~~~~~~~~~l--g~~~v---~~~~d---~~~-i~~~t-  279 (405)
                      .|+++||.|++|++|.+.++.+..   .|++|+.+.++.+..++..+.+.+.  +....   .|-.+   ... +.+.. 
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   84 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHh
Confidence            468899999999999999988877   8999999887654433333333332  33221   23222   333 32221 


Q ss_pred             --CCCCCc--EEEECCC
Q psy2960         280 --SIPKPK--LALNCVG  292 (405)
Q Consensus       280 --~g~g~D--vvld~~g  292 (405)
                        ..+.+|  +++++.|
T Consensus        85 ~~~~g~~d~~~lvnnAg  101 (259)
T 1oaa_A           85 LPRPEGLQRLLLINNAA  101 (259)
T ss_dssp             SCCCTTCCEEEEEECCC
T ss_pred             ccccccCCccEEEECCc
Confidence              234678  9999887

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=96.78  E-value=0.0014  Score=58.75  Aligned_cols=78  Identities=14%  Similarity=0.138  Sum_probs=51.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eChh---hHHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTEE---ELRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~~---d~~~-i~~~t-~g~g~  284 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.+.   ..+...+++....   .|-.   +... +.+.. ..+++
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   80 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEE---GAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSV   80 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            47899999999999999999999999999998766432   2233344443322   2322   2222 22111 02368


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        81 D~lv~nAg~   89 (254)
T 1hdc_A           81 DGLVNNAGI   89 (254)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=96.77  E-value=0.0033  Score=56.34  Aligned_cols=75  Identities=15%  Similarity=0.268  Sum_probs=49.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Chh---hHHH-HhhhcCCCCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEE---ELRN-ISRDASIPKPK  285 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~---d~~~-i~~~t~g~g~D  285 (405)
                      .|+++||.||++++|.+.++.+...|++|+.+.++.+      +...+++....+   |-.   +... +......+++|
T Consensus         8 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~------~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~g~id   81 (257)
T 3tl3_A            8 RDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGE------DVVADLGDRARFAAADVTDEAAVASALDLAETMGTLR   81 (257)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCH------HHHHHTCTTEEEEECCTTCHHHHHHHHHHHHHHSCEE
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchH------HHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhCCCC
Confidence            4789999999999999999999999999999886432      223345543322   322   2222 22111124799


Q ss_pred             EEEECCCc
Q psy2960         286 LALNCVGG  293 (405)
Q Consensus       286 vvld~~g~  293 (405)
                      +++++.|.
T Consensus        82 ~lv~nAg~   89 (257)
T 3tl3_A           82 IVVNCAGT   89 (257)
T ss_dssp             EEEECGGG
T ss_pred             EEEECCCC
Confidence            99999983

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.77  E-value=0.025  Score=49.32  Aligned_cols=116  Identities=8%  Similarity=0.047  Sum_probs=69.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      .|.+|||.|+ |.+|...++.+...|++|+++....  .++..+++.+.+...+ . +.+.. .   .-.++|+||-+++
T Consensus        30 ~gk~VLVVGg-G~va~~ka~~Ll~~GA~VtVvap~~--~~~l~~l~~~~~i~~i-~-~~~~~-~---dL~~adLVIaAT~  100 (223)
T 3dfz_A           30 KGRSVLVVGG-GTIATRRIKGFLQEGAAITVVAPTV--SAEINEWEAKGQLRVK-R-KKVGE-E---DLLNVFFIVVATN  100 (223)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHGGGCCCEEEECSSC--CHHHHHHHHTTSCEEE-C-SCCCG-G---GSSSCSEEEECCC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCCC--CHHHHHHHHcCCcEEE-E-CCCCH-h---HhCCCCEEEECCC
Confidence            5899999999 9999999999999999998886432  2333344433333322 1 11111 0   1246899999999


Q ss_pred             chhHHHHHHhcccCCEEEEEeccCCCCcccCcccccc-cCeEEEEEe
Q psy2960         293 GNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIF-KDITLRGHW  338 (405)
Q Consensus       293 ~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~-k~~~~~g~~  338 (405)
                      .+.....+...++.|..|.....+. ..++-....+. .++++.-+.
T Consensus       101 d~~~N~~I~~~ak~gi~VNvvD~p~-~~~f~~Paiv~rg~l~iaIST  146 (223)
T 3dfz_A          101 DQAVNKFVKQHIKNDQLVNMASSFS-DGNIQIPAQFSRGRLSLAIST  146 (223)
T ss_dssp             CTHHHHHHHHHSCTTCEEEC------CCSEECCEEEEETTEEEEEEC
T ss_pred             CHHHHHHHHHHHhCCCEEEEeCCcc-cCeEEEeeEEEeCCEEEEEEC
Confidence            9888766544455787776653222 12232233333 345555444

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=96.76  E-value=0.0045  Score=55.21  Aligned_cols=72  Identities=14%  Similarity=0.108  Sum_probs=48.4

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-e--C---hhhHHH----HhhhcCCCCC
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-F--T---EEELRN----ISRDASIPKP  284 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~--~---~~d~~~----i~~~t~g~g~  284 (405)
                      ++|||.||++|+|.+.++.....|++|+.+.++.+    +.+.+.+-+.+.. +  |   .++...    +.+.  -+++
T Consensus         3 K~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~----~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~--~g~i   76 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEK----RSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEK--LQRI   76 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHH----HHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHH--HSCC
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHH----HHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHH--cCCC
Confidence            68999999999999999999999999988875532    2333333333322 2  3   222222    2222  2579


Q ss_pred             cEEEECCC
Q psy2960         285 KLALNCVG  292 (405)
Q Consensus       285 Dvvld~~g  292 (405)
                      |+++|+.|
T Consensus        77 DiLVNNAG   84 (247)
T 3ged_A           77 DVLVNNAC   84 (247)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999997

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=96.76  E-value=0.0045  Score=56.02  Aligned_cols=95  Identities=14%  Similarity=0.115  Sum_probs=60.7

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         216 VVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~--G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      +|||.||+|.+|...++.+...  |.+|+++.++.++.+    .+...+...+ .|..|.+.+.+..  .++|+||.+.+
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~----~~~~~~~~~~~~D~~d~~~~~~~~--~~~d~vi~~a~   74 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQ----ALAAQGITVRQADYGDEAALTSAL--QGVEKLLLISS   74 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCH----HHHHTTCEEEECCTTCHHHHHHHT--TTCSEEEECC-
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhh----hhhcCCCeEEEcCCCCHHHHHHHH--hCCCEEEEeCC
Confidence            4899999999999999988887  999999987765422    2233455433 2444433344442  36899999987


Q ss_pred             ch------hHHHHHHhccc--CCEEEEEeccC
Q psy2960         293 GN------SATNLLRTLVS--KGVMVTYGGMS  316 (405)
Q Consensus       293 ~~------~~~~~~~~l~~--~G~~v~~g~~~  316 (405)
                      ..      .....++.+.+  -++|+.++...
T Consensus        75 ~~~~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~  106 (286)
T 2zcu_A           75 SEVGQRAPQHRNVINAAKAAGVKFIAYTSLLH  106 (286)
T ss_dssp             -------CHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred             CCchHHHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence            42      22334444443  35899887643

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=96.74  E-value=0.0052  Score=55.88  Aligned_cols=76  Identities=14%  Similarity=0.178  Sum_probs=52.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Chh---hHHH----HhhhcCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEE---ELRN----ISRDASIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~---d~~~----i~~~t~g~  282 (405)
                      .|+++||.||++++|.+.++.+...|++|+.+.++.+.   ..+....++....+   |-.   +...    +.+.  .+
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~--~g   78 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAER---LRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAA--FG   78 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHH--HS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHH---HHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHh--cC
Confidence            47899999999999999999999999999998766433   22334455543322   322   2222    2222  24


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      ++|+++++.|.
T Consensus        79 ~iD~lvnnAg~   89 (281)
T 3zv4_A           79 KIDTLIPNAGI   89 (281)
T ss_dssp             CCCEEECCCCC
T ss_pred             CCCEEEECCCc
Confidence            79999999983

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=96.74  E-value=0.0039  Score=55.33  Aligned_cols=67  Identities=21%  Similarity=0.264  Sum_probs=45.9

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh---HHH-HhhhcCCCCCcEEEEC
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE---LRN-ISRDASIPKPKLALNC  290 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d---~~~-i~~~t~g~g~Dvvld~  290 (405)
                      ++|||.||+|++|...+..+...|++|+++.++.++.+.          ....|-.+   ... +.+.  ..++|+||++
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----------~~~~D~~~~~~~~~~~~~~--~~~~d~vi~~   69 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA----------DLSTPGGRETAVAAVLDRC--GGVLDGLVCC   69 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC----------CTTSHHHHHHHHHHHHHHH--TTCCSEEEEC
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc----------cccCCcccHHHHHHHHHHc--CCCccEEEEC
Confidence            479999999999999999988899999999876543210          11112222   222 3222  2479999999


Q ss_pred             CCc
Q psy2960         291 VGG  293 (405)
Q Consensus       291 ~g~  293 (405)
                      .|.
T Consensus        70 Ag~   72 (255)
T 2dkn_A           70 AGV   72 (255)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            874

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.73  E-value=0.011  Score=55.30  Aligned_cols=91  Identities=15%  Similarity=0.111  Sum_probs=58.6

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEEEC
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALNC  290 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld~  290 (405)
                      ..+.+|||.||+|.+|...++.+...|++|+++.++.+.          .+...+ .|..|...+.+..  .++|+||.+
T Consensus        17 ~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~----------~~~~~~~~Dl~d~~~~~~~~--~~~d~vih~   84 (347)
T 4id9_A           17 RGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG----------TGGEEVVGSLEDGQALSDAI--MGVSAVLHL   84 (347)
T ss_dssp             ----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS----------SCCSEEESCTTCHHHHHHHH--TTCSEEEEC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC----------CCccEEecCcCCHHHHHHHH--hCCCEEEEC
Confidence            357889999999999999999999999999999876542          233333 2444433333332  278999998


Q ss_pred             CCchh----------------HHHHHHhcccC--CEEEEEec
Q psy2960         291 VGGNS----------------ATNLLRTLVSK--GVMVTYGG  314 (405)
Q Consensus       291 ~g~~~----------------~~~~~~~l~~~--G~~v~~g~  314 (405)
                      .+...                ....++.+.+.  ++||.++.
T Consensus        85 A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS  126 (347)
T 4id9_A           85 GAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASS  126 (347)
T ss_dssp             CCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             CcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECC
Confidence            86310                12234444433  48998886

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=96.73  E-value=0.0075  Score=54.64  Aligned_cols=94  Identities=19%  Similarity=0.152  Sum_probs=61.8

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         216 VVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~--G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      +|||.||+|.+|...++.+...  |.+|++++++.++.    +.+...+...+ .|..|.+.+.+..  .++|+||.+.+
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~----~~l~~~~~~~~~~D~~d~~~l~~~~--~~~d~vi~~a~   75 (287)
T 2jl1_A            2 SIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKA----STLADQGVEVRHGDYNQPESLQKAF--AGVSKLLFISG   75 (287)
T ss_dssp             CEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTT----HHHHHTTCEEEECCTTCHHHHHHHT--TTCSEEEECCC
T ss_pred             eEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHH----hHHhhcCCeEEEeccCCHHHHHHHH--hcCCEEEEcCC
Confidence            6999999999999999988887  99999999876542    22233454433 2444433344442  36899999987


Q ss_pred             ch--------hHHHHHHhcccC--CEEEEEecc
Q psy2960         293 GN--------SATNLLRTLVSK--GVMVTYGGM  315 (405)
Q Consensus       293 ~~--------~~~~~~~~l~~~--G~~v~~g~~  315 (405)
                      ..        .....++.+.+.  ++|+.++..
T Consensus        76 ~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~  108 (287)
T 2jl1_A           76 PHYDNTLLIVQHANVVKAARDAGVKHIAYTGYA  108 (287)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHTTCSEEEEEEET
T ss_pred             CCcCchHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence            41        112334544443  489988754

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=96.73  E-value=0.0044  Score=55.66  Aligned_cols=80  Identities=14%  Similarity=0.184  Sum_probs=52.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcC---CcEEEEecCCcchHHHHHHHHHcCCcE-Ee--Ch---hhHHH----Hhhhc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWG---LKTINIVRNRDDIDKLKSYLKSLGADY-VF--TE---EELRN----ISRDA  279 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G---~~v~~~~~~~~~~~~~~~~~~~lg~~~-v~--~~---~d~~~----i~~~t  279 (405)
                      .+.+|||.||+|++|.+.++.+...|   ++|+.+.++.+..+.. +.+.+.+... ++  |-   ++...    +.+..
T Consensus        20 ~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~-~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   98 (267)
T 1sny_A           20 HMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL-EDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVT   98 (267)
T ss_dssp             CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHH-HHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHH-HHhhccCCceEEEEecCCChHHHHHHHHHHHHhc
Confidence            57899999999999999999999999   8999998876554332 2222223322 22  32   22222    22222


Q ss_pred             CCCCCcEEEECCCc
Q psy2960         280 SIPKPKLALNCVGG  293 (405)
Q Consensus       280 ~g~g~Dvvld~~g~  293 (405)
                      +..++|++|++.|.
T Consensus        99 g~~~id~li~~Ag~  112 (267)
T 1sny_A           99 KDQGLNVLFNNAGI  112 (267)
T ss_dssp             GGGCCSEEEECCCC
T ss_pred             CCCCccEEEECCCc
Confidence            21269999999873

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=96.72  E-value=0.0048  Score=57.42  Aligned_cols=79  Identities=20%  Similarity=0.254  Sum_probs=49.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC--c-EEe--ChhhHHHHhhhcCCCCCcEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA--D-YVF--TEEELRNISRDASIPKPKLA  287 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~--~-~v~--~~~d~~~i~~~t~g~g~Dvv  287 (405)
                      .|.+|||.||+|.+|...++.+...|++|+++.++.+..+.  +.+..++.  . .++  |-.|.+.+.+...+.++|+|
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~--~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v   79 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFAS--WRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEV   79 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTT--HHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCccccc--ccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEE
Confidence            36789999999999999999988899999999877543211  22233321  1 122  33332222222111268999


Q ss_pred             EECCCc
Q psy2960         288 LNCVGG  293 (405)
Q Consensus       288 ld~~g~  293 (405)
                      |++.|.
T Consensus        80 ih~A~~   85 (345)
T 2z1m_A           80 YNLAAQ   85 (345)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999874

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=96.71  E-value=0.01  Score=54.46  Aligned_cols=104  Identities=10%  Similarity=0.073  Sum_probs=69.0

Q ss_pred             HHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc-EE-eChhhHHHHhhhcCC
Q psy2960         204 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YV-FTEEELRNISRDASI  281 (405)
Q Consensus       204 al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~-~v-~~~~d~~~i~~~t~g  281 (405)
                      .+....++++|++||-.|+  |.|..+..+++..|++++++--+++..+...+.+...|.. .+ +-..|   +.+.  .
T Consensus        63 ~~~~~~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~--~  135 (302)
T 3hem_A           63 LALDKLNLEPGMTLLDIGC--GWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQG---WEEF--D  135 (302)
T ss_dssp             HHHHTTCCCTTCEEEEETC--TTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECC---GGGC--C
T ss_pred             HHHHHcCCCCcCEEEEeec--cCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECC---HHHc--C
Confidence            3445568899999999998  3599999999998998888865554444444455555543 12 11122   2222  4


Q ss_pred             CCCcEEEECCCc----------------hhHHHHHHhcccCCEEEEEec
Q psy2960         282 PKPKLALNCVGG----------------NSATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       282 ~g~Dvvld~~g~----------------~~~~~~~~~l~~~G~~v~~g~  314 (405)
                      ..+|+|+....-                ..+....+.|+|+|+++....
T Consensus       136 ~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  184 (302)
T 3hem_A          136 EPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTI  184 (302)
T ss_dssp             CCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred             CCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEE
Confidence            679999874321                223456789999999988664

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=96.71  E-value=0.0038  Score=58.57  Aligned_cols=80  Identities=8%  Similarity=0.107  Sum_probs=50.8

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHc-CC-cEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEE
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHW-GL-KTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLAL  288 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~-G~-~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvl  288 (405)
                      -.+.+|||.||+|.+|...++.+... |+ +|+++.++.++.+...+.+..-+...+ .|-+|.+.+.+..  .++|+||
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~--~~~D~Vi   96 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYAL--EGVDICI   96 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHT--TTCSEEE
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHH--hcCCEEE
Confidence            35789999999999999999888888 98 888887654332211111111122222 2444443344443  3689999


Q ss_pred             ECCCc
Q psy2960         289 NCVGG  293 (405)
Q Consensus       289 d~~g~  293 (405)
                      .+++.
T Consensus        97 h~Aa~  101 (344)
T 2gn4_A           97 HAAAL  101 (344)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            99974

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=96.71  E-value=0.0031  Score=64.15  Aligned_cols=81  Identities=16%  Similarity=0.224  Sum_probs=51.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEec---------CCcchHHHHHHHHHcCCcEEeChhhH---HH-Hhhhc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVR---------NRDDIDKLKSYLKSLGADYVFTEEEL---RN-ISRDA  279 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~---------~~~~~~~~~~~~~~lg~~~v~~~~d~---~~-i~~~t  279 (405)
                      .|+++||.||++|+|.+.+..+...|++|+++.+         +.+..+...+.+++.+...+.|..+.   .. +.+..
T Consensus        18 ~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d~~~~~~~~~~~~   97 (613)
T 3oml_A           18 DGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNSVIDGAKVIETAI   97 (613)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTTCCEEECCCCGGGHHHHHC---
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHH
Confidence            5899999999999999999999999999998764         33444445556666777666664432   22 22221


Q ss_pred             -CCCCCcEEEECCCc
Q psy2960         280 -SIPKPKLALNCVGG  293 (405)
Q Consensus       280 -~g~g~Dvvld~~g~  293 (405)
                       ..+.+|++|++.|.
T Consensus        98 ~~~g~iDiLVnnAGi  112 (613)
T 3oml_A           98 KAFGRVDILVNNAGI  112 (613)
T ss_dssp             -------CEECCCCC
T ss_pred             HHCCCCcEEEECCCC
Confidence             12468999999983

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=96.71  E-value=0.0055  Score=55.15  Aligned_cols=81  Identities=11%  Similarity=0.056  Sum_probs=52.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc-chHHHHHHHHHcCCcEEe---Chhh---HHH-Hhhh-cCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD-DIDKLKSYLKSLGADYVF---TEEE---LRN-ISRD-ASIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~-~~~~~~~~~~~lg~~~v~---~~~d---~~~-i~~~-t~g~g  283 (405)
                      .+++|||.||+|++|.+.++.+...|++|+++.+... ..++..+.+.+.+....+   |-.+   ... +.+. ...++
T Consensus        25 ~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~  104 (267)
T 4iiu_A           25 MSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQHGA  104 (267)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            4689999999999999999999999999977664432 333334444455543322   3222   222 2211 11247


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|+++++.|.
T Consensus       105 id~li~nAg~  114 (267)
T 4iiu_A          105 WYGVVSNAGI  114 (267)
T ss_dssp             CSEEEECCCC
T ss_pred             ccEEEECCCC
Confidence            8999999873

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=96.70  E-value=0.0095  Score=55.58  Aligned_cols=80  Identities=9%  Similarity=0.058  Sum_probs=49.7

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcc------hHHHHHHHHH---cCCcEE-eChhhHHHHhhhcCCCC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD------IDKLKSYLKS---LGADYV-FTEEELRNISRDASIPK  283 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~------~~~~~~~~~~---lg~~~v-~~~~d~~~i~~~t~g~g  283 (405)
                      +.+|||.||+|.+|...++.+...|++|+++.++...      .+...+.+.+   .+...+ .|-.+.+.+.+.....+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   81 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYS   81 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhcC
Confidence            4689999999999999999988899999998764322      1222333332   122322 23333222222211127


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|+||++.|.
T Consensus        82 ~d~vih~A~~   91 (348)
T 1ek6_A           82 FMAVIHFAGL   91 (348)
T ss_dssp             EEEEEECCSC
T ss_pred             CCEEEECCCC
Confidence            8999999874

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=96.69  E-value=0.0085  Score=59.05  Aligned_cols=84  Identities=14%  Similarity=0.218  Sum_probs=55.9

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCc---chHHHHHHHHHcCCcEEe---Chhh---HHH-Hhhh
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRD---DIDKLKSYLKSLGADYVF---TEEE---LRN-ISRD  278 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~---~~~~~~~~~~~lg~~~v~---~~~d---~~~-i~~~  278 (405)
                      .++++.++||.||+|++|...++.+...|++ ++.+.++.+   ..++..+.+.+.|....+   |-.|   ... +.+.
T Consensus       222 ~~~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i  301 (486)
T 2fr1_A          222 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGI  301 (486)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred             CcCCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHH
Confidence            4678999999999999999999888888997 666666543   123344555666764322   3222   333 3333


Q ss_pred             cCCCCCcEEEECCCc
Q psy2960         279 ASIPKPKLALNCVGG  293 (405)
Q Consensus       279 t~g~g~Dvvld~~g~  293 (405)
                      .....+|.||++.|.
T Consensus       302 ~~~g~ld~VIh~AG~  316 (486)
T 2fr1_A          302 GDDVPLSAVFHAAAT  316 (486)
T ss_dssp             CTTSCEEEEEECCCC
T ss_pred             HhcCCCcEEEECCcc
Confidence            223468999999983

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=96.69  E-value=0.0072  Score=53.57  Aligned_cols=76  Identities=8%  Similarity=0.035  Sum_probs=44.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe--ChhhHH--H-Hhh-hcCCCCCcE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEEELR--N-ISR-DASIPKPKL  286 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~--~~~d~~--~-i~~-~t~g~g~Dv  286 (405)
                      .|+++||.||+|++|.+.++.+.. |++|+++.++.+.    .+.+.++..-..+  |..+..  . +.+ ...-.++|+
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~----~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~   78 (245)
T 3e9n_A            4 KKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEH----LAALAEIEGVEPIESDIVKEVLEEGGVDKLKNLDHVDT   78 (245)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHH----HHHHHTSTTEEEEECCHHHHHHTSSSCGGGTTCSCCSE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHH----HHHHHhhcCCcceecccchHHHHHHHHHHHHhcCCCCE
Confidence            478999999999999998887755 9988888765432    3333333322222  322211  1 111 112347999


Q ss_pred             EEECCCc
Q psy2960         287 ALNCVGG  293 (405)
Q Consensus       287 vld~~g~  293 (405)
                      ++++.|.
T Consensus        79 lv~~Ag~   85 (245)
T 3e9n_A           79 LVHAAAV   85 (245)
T ss_dssp             EEECC--
T ss_pred             EEECCCc
Confidence            9999984

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=96.68  E-value=0.0048  Score=55.52  Aligned_cols=37  Identities=14%  Similarity=0.306  Sum_probs=34.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD  249 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~  249 (405)
                      .|+++||.||++|+|.+.++.+...|++|+.+.++.+
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   46 (261)
T 4h15_A           10 RGKRALITAGTKGAGAATVSLFLELGAQVLTTARARP   46 (261)
T ss_dssp             TTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             CCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCch
Confidence            6999999999999999999999999999999987654

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=96.66  E-value=0.0076  Score=55.33  Aligned_cols=95  Identities=14%  Similarity=0.235  Sum_probs=60.4

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcch-HHHHHH---HHHcCCcEE-eChhhHHHHhhhcCCCCCcEEE
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDI-DKLKSY---LKSLGADYV-FTEEELRNISRDASIPKPKLAL  288 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~-~~~~~~---~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvl  288 (405)
                      ..+|||.||+|.+|...++.+...|.+|++++++.... +.+.+.   +...+...+ .|..|.+.+.+..  .++|+||
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~--~~~d~vi   81 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDAL--KQVDVVI   81 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHH--TTCSEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHH--hCCCEEE
Confidence            35799999999999999999999999999998764321 122222   233455433 2444433343333  3689999


Q ss_pred             ECCCch-------hHHHHHHhcccCC---EEE
Q psy2960         289 NCVGGN-------SATNLLRTLVSKG---VMV  310 (405)
Q Consensus       289 d~~g~~-------~~~~~~~~l~~~G---~~v  310 (405)
                      .+++..       .....++.++..|   +|+
T Consensus        82 ~~a~~~~~~~~~~~~~~l~~aa~~~g~v~~~v  113 (313)
T 1qyd_A           82 SALAGGVLSHHILEQLKLVEAIKEAGNIKRFL  113 (313)
T ss_dssp             ECCCCSSSSTTTTTHHHHHHHHHHSCCCSEEE
T ss_pred             ECCccccchhhHHHHHHHHHHHHhcCCCceEE
Confidence            998743       2234455555444   776

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=96.64  E-value=0.011  Score=58.30  Aligned_cols=83  Identities=16%  Similarity=0.201  Sum_probs=54.4

Q ss_pred             CCCC--CEEEEeCCCcHHHHHHHHHHHHcCCcE-EEEecCC---cchHHHHHHHHHcCCcEEe---Chh---hHHH-Hhh
Q psy2960         211 LSPG--DVVIQNGANSACGQNVIQIARHWGLKT-INIVRNR---DDIDKLKSYLKSLGADYVF---TEE---ELRN-ISR  277 (405)
Q Consensus       211 ~~~g--~~VLI~ga~G~vG~~aiqla~~~G~~v-~~~~~~~---~~~~~~~~~~~~lg~~~v~---~~~---d~~~-i~~  277 (405)
                      .+++  .++||.|++|++|...++.+...|+++ +.+.++.   +..++..+.+.+.|....+   |-.   +... +.+
T Consensus       234 ~~~~~~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~  313 (496)
T 3mje_A          234 KRPPVHGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAE  313 (496)
T ss_dssp             CCCCCCSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHT
T ss_pred             CCCCCCCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHH
Confidence            3455  999999999999999998888899954 4444432   2234455666777865433   322   2333 333


Q ss_pred             hcCCCCCcEEEECCCc
Q psy2960         278 DASIPKPKLALNCVGG  293 (405)
Q Consensus       278 ~t~g~g~Dvvld~~g~  293 (405)
                      .....++|+||++.|.
T Consensus       314 i~~~g~ld~vVh~AGv  329 (496)
T 3mje_A          314 LPEDAPLTAVFHSAGV  329 (496)
T ss_dssp             CCTTSCEEEEEECCCC
T ss_pred             HHHhCCCeEEEECCcc
Confidence            3223479999999884

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.64  E-value=0.015  Score=46.68  Aligned_cols=77  Identities=14%  Similarity=0.092  Sum_probs=54.8

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe-ChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~-~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      ..+|+|.|+ |.+|...++.+...|.+|+++.++    +++.+.+++.|...+. |..+.+.+.+. +-.++|+|+.+++
T Consensus         6 ~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~----~~~~~~~~~~~~~~~~gd~~~~~~l~~~-~~~~~d~vi~~~~   79 (141)
T 3llv_A            6 RYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKS----KEKIELLEDEGFDAVIADPTDESFYRSL-DLEGVSAVLITGS   79 (141)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESC----HHHHHHHHHTTCEEEECCTTCHHHHHHS-CCTTCSEEEECCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECC----HHHHHHHHHCCCcEEECCCCCHHHHHhC-CcccCCEEEEecC
Confidence            568999999 999999999999999999988644    3446666677765443 33332223332 3457899999999


Q ss_pred             chhH
Q psy2960         293 GNSA  296 (405)
Q Consensus       293 ~~~~  296 (405)
                      ....
T Consensus        80 ~~~~   83 (141)
T 3llv_A           80 DDEF   83 (141)
T ss_dssp             CHHH
T ss_pred             CHHH
Confidence            6544

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=96.64  E-value=0.0047  Score=55.79  Aligned_cols=77  Identities=17%  Similarity=0.245  Sum_probs=49.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC--c-EE--eChhh---HHH-Hhhhc-CCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA--D-YV--FTEEE---LRN-ISRDA-SIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~--~-~v--~~~~d---~~~-i~~~t-~g~  282 (405)
                      .+.+|||.||+|++|.+.++.+...|++|+++.++.+..+   +...+++.  . .+  .|-.|   ... +.+.. ...
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~---~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   91 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQ---KVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHG   91 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH---HHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHH---HHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999999999999999998876543222   22233332  1 12  23222   222 22110 024


Q ss_pred             CCcEEEECCC
Q psy2960         283 KPKLALNCVG  292 (405)
Q Consensus       283 g~Dvvld~~g  292 (405)
                      ++|++|++.|
T Consensus        92 ~id~li~~Ag  101 (278)
T 2bgk_A           92 KLDIMFGNVG  101 (278)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCc
Confidence            6899999987

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=96.63  E-value=0.0038  Score=54.11  Aligned_cols=102  Identities=22%  Similarity=0.256  Sum_probs=65.7

Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcC--CcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHH-HhhhcCCC
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRN-ISRDASIP  282 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G--~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~-i~~~t~g~  282 (405)
                      ....++++++||..|+ | .|..+..+++..|  .+++++-.+++..+...+.+...|.+.+ +...|... ...   ..
T Consensus        71 ~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~  145 (215)
T 2yxe_A           71 ELLDLKPGMKVLEIGT-G-CGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEP---LA  145 (215)
T ss_dssp             HHTTCCTTCEEEEECC-T-TSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGG---GC
T ss_pred             HhhCCCCCCEEEEECC-C-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCC---CC
Confidence            4467889999999998 4 6999999999887  6777775443333333333334454322 11222222 211   34


Q ss_pred             CCcEEEECCCchhH-HHHHHhcccCCEEEEEe
Q psy2960         283 KPKLALNCVGGNSA-TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       283 g~Dvvld~~g~~~~-~~~~~~l~~~G~~v~~g  313 (405)
                      .+|+|+.+.+-..+ ....++|+++|+++..-
T Consensus       146 ~fD~v~~~~~~~~~~~~~~~~L~pgG~lv~~~  177 (215)
T 2yxe_A          146 PYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPV  177 (215)
T ss_dssp             CEEEEEESSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             CeeEEEECCchHHHHHHHHHHcCCCcEEEEEE
Confidence            69999987765444 46679999999998875

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=96.62  E-value=0.0039  Score=53.76  Aligned_cols=101  Identities=16%  Similarity=0.114  Sum_probs=66.3

Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHH-HhhhcCCCCC
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRN-ISRDASIPKP  284 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~-i~~~t~g~g~  284 (405)
                      ....++++++||-.|+ | .|..+..+++. +.+++++-.+++..+...+.+...|.+.+ +...|..+ ...   ...+
T Consensus        71 ~~l~~~~~~~vLdiG~-G-~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~~  144 (210)
T 3lbf_A           71 ELLELTPQSRVLEIGT-G-SGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQA---RAPF  144 (210)
T ss_dssp             HHTTCCTTCEEEEECC-T-TSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG---GCCE
T ss_pred             HhcCCCCCCEEEEEcC-C-CCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCcc---CCCc
Confidence            4467889999999998 3 58888999988 78888876554443333444455564322 21222222 211   3579


Q ss_pred             cEEEECCCchhH-HHHHHhcccCCEEEEEe
Q psy2960         285 KLALNCVGGNSA-TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       285 Dvvld~~g~~~~-~~~~~~l~~~G~~v~~g  313 (405)
                      |+|+.+..-..+ ....+.|+++|+++..-
T Consensus       145 D~i~~~~~~~~~~~~~~~~L~pgG~lv~~~  174 (210)
T 3lbf_A          145 DAIIVTAAPPEIPTALMTQLDEGGILVLPV  174 (210)
T ss_dssp             EEEEESSBCSSCCTHHHHTEEEEEEEEEEE
T ss_pred             cEEEEccchhhhhHHHHHhcccCcEEEEEE
Confidence            999987654444 35679999999998765

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=96.62  E-value=0.0073  Score=56.71  Aligned_cols=80  Identities=10%  Similarity=0.063  Sum_probs=50.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHH-HcCCcEE-eChhhHHHHhhhcCCCCCcEEEEC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGADYV-FTEEELRNISRDASIPKPKLALNC  290 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~-~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld~  290 (405)
                      .+.+|||.||+|.+|...++.+...|++|+++.++.+..+...+.+. .-+...+ .|-.+...+.+...+.++|+||.+
T Consensus         8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~   87 (357)
T 1rkx_A            8 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHM   87 (357)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEEEC
Confidence            36789999999999999999999999999999877654322222111 1122222 233332222222111258999999


Q ss_pred             CC
Q psy2960         291 VG  292 (405)
Q Consensus       291 ~g  292 (405)
                      .|
T Consensus        88 A~   89 (357)
T 1rkx_A           88 AA   89 (357)
T ss_dssp             CS
T ss_pred             CC
Confidence            98

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=96.61  E-value=0.012  Score=54.35  Aligned_cols=104  Identities=12%  Similarity=0.178  Sum_probs=66.2

Q ss_pred             HHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc--EEeChhhHHHHhhhcCC
Q psy2960         204 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YVFTEEELRNISRDASI  281 (405)
Q Consensus       204 al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~--~v~~~~d~~~i~~~t~g  281 (405)
                      .+....++++|++||-.|+ | .|..+..+++..|++++++--+++..+...+.+...|..  .-+...|.   .+.  .
T Consensus        81 ~~~~~~~~~~~~~vLDiGc-G-~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~--~  153 (318)
T 2fk8_A           81 LNLDKLDLKPGMTLLDIGC-G-WGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGW---EDF--A  153 (318)
T ss_dssp             HHHTTSCCCTTCEEEEESC-T-TSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCG---GGC--C
T ss_pred             HHHHhcCCCCcCEEEEEcc-c-chHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCh---HHC--C
Confidence            3445567889999999998 4 488999999988998888865544333333344444432  11111222   222  2


Q ss_pred             CCCcEEEEC-----CCch----hHHHHHHhcccCCEEEEEec
Q psy2960         282 PKPKLALNC-----VGGN----SATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       282 ~g~Dvvld~-----~g~~----~~~~~~~~l~~~G~~v~~g~  314 (405)
                      ..+|+|+..     ++.+    .+....+.|+|+|+++....
T Consensus       154 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  195 (318)
T 2fk8_A          154 EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSS  195 (318)
T ss_dssp             CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            579999976     4322    23445789999999987653

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.59  E-value=0.0045  Score=55.22  Aligned_cols=72  Identities=19%  Similarity=0.227  Sum_probs=49.6

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eCh-hhHHHHhhhcCCCCCcEEEE
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTE-EELRNISRDASIPKPKLALN  289 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~-~d~~~i~~~t~g~g~Dvvld  289 (405)
                      -.|++|||.||+|++|.+.++.+...|++|+++.++.       +.+.+++...+ .|- ++...+.+..  .++|++++
T Consensus        17 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~-------~~~~~~~~~~~~~D~~~~~~~~~~~~--~~iD~lv~   87 (249)
T 1o5i_A           17 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE-------ELLKRSGHRYVVCDLRKDLDLLFEKV--KEVDILVL   87 (249)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH-------HHHHHTCSEEEECCTTTCHHHHHHHS--CCCSEEEE
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH-------HHHHhhCCeEEEeeHHHHHHHHHHHh--cCCCEEEE
Confidence            3689999999999999999999999999999887653       22334443222 232 1233322222  27999999


Q ss_pred             CCC
Q psy2960         290 CVG  292 (405)
Q Consensus       290 ~~g  292 (405)
                      +.|
T Consensus        88 ~Ag   90 (249)
T 1o5i_A           88 NAG   90 (249)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            997

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=96.58  E-value=0.014  Score=56.13  Aligned_cols=85  Identities=16%  Similarity=0.046  Sum_probs=53.7

Q ss_pred             cCCCCCCEEEEeCCCcHHHHH--HHHHHHHcCCcEEEEecCCcc------------hHHHHHHHHHcCCcEEe---Ch--
Q psy2960         209 NSLSPGDVVIQNGANSACGQN--VIQIARHWGLKTINIVRNRDD------------IDKLKSYLKSLGADYVF---TE--  269 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~--aiqla~~~G~~v~~~~~~~~~------------~~~~~~~~~~lg~~~v~---~~--  269 (405)
                      ..+..|+++||.||++|+|.+  .+......|++|+.+.++.+.            .+...+.+++.|.....   |-  
T Consensus        55 ~~~~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd  134 (418)
T 4eue_A           55 IGFRGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFS  134 (418)
T ss_dssp             CCCCCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTC
T ss_pred             CcCCCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCC
Confidence            456789999999999999998  444444459999988765443            12333455666654332   32  


Q ss_pred             -hhHHH-Hhhhc-CCCCCcEEEECCCc
Q psy2960         270 -EELRN-ISRDA-SIPKPKLALNCVGG  293 (405)
Q Consensus       270 -~d~~~-i~~~t-~g~g~Dvvld~~g~  293 (405)
                       ++... +.+.. ..+++|++++++|.
T Consensus       135 ~~~v~~~v~~i~~~~G~IDiLVnNAG~  161 (418)
T 4eue_A          135 NETKDKVIKYIKDEFGKIDLFVYSLAA  161 (418)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECCCC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence             22222 22221 13579999999885

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=96.57  E-value=0.0085  Score=53.60  Aligned_cols=81  Identities=15%  Similarity=0.161  Sum_probs=52.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHH-HHcCCcEE---eChhh---HHH-Hhhhc-CCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYV---FTEEE---LRN-ISRDA-SIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~-~~lg~~~v---~~~~d---~~~-i~~~t-~g~g  283 (405)
                      .+.+|||.||+|++|.+.++.+...|++|+++.++.++.....+.+ ...+....   .|-.|   ... +.+.. ....
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   92 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGP   92 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            4689999999999999999999999999999987655433323222 22343322   23222   222 22211 1246


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|+++++.|.
T Consensus        93 id~li~~Ag~  102 (265)
T 1h5q_A           93 ISGLIANAGV  102 (265)
T ss_dssp             EEEEEECCCC
T ss_pred             CCEEEECCCc
Confidence            8999999873

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=96.57  E-value=0.0033  Score=55.32  Aligned_cols=77  Identities=13%  Similarity=0.170  Sum_probs=49.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE--eChhh---HHH-Hhhhc-CCCCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV--FTEEE---LRN-ISRDA-SIPKPK  285 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v--~~~~d---~~~-i~~~t-~g~g~D  285 (405)
                      .+.+|||.||+|++|.+.++.+...|++|+++.++.+..   .+...+++.-..  .|-.+   ... +.+.. ..+++|
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRL---QALAAELEGALPLPGDVREEGDWARAVAAMEEAFGELS   80 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHH---HHHHHHhhhceEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            357899999999999999999999999999888654322   222333432222  23222   222 22110 023689


Q ss_pred             EEEECCC
Q psy2960         286 LALNCVG  292 (405)
Q Consensus       286 vvld~~g  292 (405)
                      +++++.|
T Consensus        81 ~li~~Ag   87 (234)
T 2ehd_A           81 ALVNNAG   87 (234)
T ss_dssp             EEEECCC
T ss_pred             EEEECCC
Confidence            9999987

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=96.56  E-value=0.0057  Score=53.92  Aligned_cols=102  Identities=17%  Similarity=0.188  Sum_probs=66.2

Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHH-HhhhcCCCCC
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRN-ISRDASIPKP  284 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~-i~~~t~g~g~  284 (405)
                      +...++++++||..|+ | .|..+..+++..+.+++++-.+++..+...+.+...|.+.+ +...|... +..   ..++
T Consensus        85 ~~l~~~~~~~vLdiG~-G-~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~---~~~f  159 (235)
T 1jg1_A           85 EIANLKPGMNILEVGT-G-SGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPP---KAPY  159 (235)
T ss_dssp             HHHTCCTTCCEEEECC-T-TSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG---GCCE
T ss_pred             HhcCCCCCCEEEEEeC-C-cCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCC---CCCc
Confidence            3357889999999998 4 79999999998877777775444333333344444564322 21222221 221   3358


Q ss_pred             cEEEECCCchhH-HHHHHhcccCCEEEEEe
Q psy2960         285 KLALNCVGGNSA-TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       285 Dvvld~~g~~~~-~~~~~~l~~~G~~v~~g  313 (405)
                      |+|+.+..-..+ ....+.|+++|+++..-
T Consensus       160 D~Ii~~~~~~~~~~~~~~~L~pgG~lvi~~  189 (235)
T 1jg1_A          160 DVIIVTAGAPKIPEPLIEQLKIGGKLIIPV  189 (235)
T ss_dssp             EEEEECSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             cEEEECCcHHHHHHHHHHhcCCCcEEEEEE
Confidence            999987665444 46679999999988764

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=96.55  E-value=0.0025  Score=57.69  Aligned_cols=78  Identities=13%  Similarity=0.253  Sum_probs=50.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe--Chhh---HHH-Hhhhc-CCCCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEEE---LRN-ISRDA-SIPKPK  285 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~--~~~d---~~~-i~~~t-~g~g~D  285 (405)
                      .|+++||.||+|++|.+.++.+...|++|+++.++.+..   .+...++..-..+  |-.|   ... +.+.. ..+++|
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~---~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD   84 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGG---RALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLD   84 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHH---HHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH---HHHHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence            578999999999999999999999999999887654322   2223334322222  3222   222 22110 124689


Q ss_pred             EEEECCCc
Q psy2960         286 LALNCVGG  293 (405)
Q Consensus       286 vvld~~g~  293 (405)
                      +++++.|.
T Consensus        85 ~lv~nAg~   92 (270)
T 1yde_A           85 CVVNNAGH   92 (270)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99999873

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=96.55  E-value=0.0094  Score=47.70  Aligned_cols=76  Identities=13%  Similarity=0.162  Sum_probs=50.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe-ChhhHHHHhhhcCCCCCcEEEECC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~-~~~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                      ++++|+|.|+ |.+|...++.+...|++++++.++.    ++.+.+.+.|...+. +..+.+.+.+. +..++|+|+.|+
T Consensus         5 ~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~----~~~~~~~~~~~~~~~~d~~~~~~l~~~-~~~~~d~vi~~~   78 (144)
T 2hmt_A            5 KNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINE----EKVNAYASYATHAVIANATEENELLSL-GIRNFEYVIVAI   78 (144)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCH----HHHHTTTTTCSEEEECCTTCHHHHHTT-TGGGCSEEEECC
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCH----HHHHHHHHhCCEEEEeCCCCHHHHHhc-CCCCCCEEEECC
Confidence            3578999998 9999999999999999988776432    334444455554332 33332223322 224689999999


Q ss_pred             Cch
Q psy2960         292 GGN  294 (405)
Q Consensus       292 g~~  294 (405)
                      +..
T Consensus        79 ~~~   81 (144)
T 2hmt_A           79 GAN   81 (144)
T ss_dssp             CSC
T ss_pred             CCc
Confidence            974

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=96.55  E-value=0.0091  Score=53.61  Aligned_cols=78  Identities=17%  Similarity=0.181  Sum_probs=52.6

Q ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHcCCcEEEEecCCcch-HHHHHHH-HHcCCcEEe---Chh---hHHH----Hhhh
Q psy2960         213 PGDVVIQNGAN--SACGQNVIQIARHWGLKTINIVRNRDDI-DKLKSYL-KSLGADYVF---TEE---ELRN----ISRD  278 (405)
Q Consensus       213 ~g~~VLI~ga~--G~vG~~aiqla~~~G~~v~~~~~~~~~~-~~~~~~~-~~lg~~~v~---~~~---d~~~----i~~~  278 (405)
                      .|+++||.||+  +++|.+.++.+...|++|+.+.++.+.. ++..+.+ ...+....+   |-.   +...    +.+.
T Consensus        19 ~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   98 (267)
T 3gdg_A           19 KGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDVVAD   98 (267)
T ss_dssp             TTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHHHHHH
Confidence            57899999999  8999999999999999999988765543 2333333 334544332   222   2222    2222


Q ss_pred             cCCCCCcEEEECCC
Q psy2960         279 ASIPKPKLALNCVG  292 (405)
Q Consensus       279 t~g~g~Dvvld~~g  292 (405)
                        .+.+|++|++.|
T Consensus        99 --~g~id~li~nAg  110 (267)
T 3gdg_A           99 --FGQIDAFIANAG  110 (267)
T ss_dssp             --TSCCSEEEECCC
T ss_pred             --cCCCCEEEECCC
Confidence              347999999987

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=96.54  E-value=0.0061  Score=58.39  Aligned_cols=84  Identities=14%  Similarity=0.117  Sum_probs=55.8

Q ss_pred             cCC-CCCCEEEEeCCCcHHHHHHHHHHHH-cCCcEEEEecCCcchHH------------HHHHHHHcCCcEEe---Ch--
Q psy2960         209 NSL-SPGDVVIQNGANSACGQNVIQIARH-WGLKTINIVRNRDDIDK------------LKSYLKSLGADYVF---TE--  269 (405)
Q Consensus       209 ~~~-~~g~~VLI~ga~G~vG~~aiqla~~-~G~~v~~~~~~~~~~~~------------~~~~~~~lg~~~v~---~~--  269 (405)
                      ..+ +.|+++||.||++|+|.+.+..+.. .|++|+.+.++.+..+.            ..+.+++.|.....   |-  
T Consensus        55 ~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd  134 (422)
T 3s8m_A           55 GVRNDGPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFS  134 (422)
T ss_dssp             CCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTS
T ss_pred             cccccCCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCC
Confidence            455 4688999999999999998888777 99999988766543221            22455666754332   32  


Q ss_pred             -hhHHH----HhhhcCCCCCcEEEECCCc
Q psy2960         270 -EELRN----ISRDASIPKPKLALNCVGG  293 (405)
Q Consensus       270 -~d~~~----i~~~t~g~g~Dvvld~~g~  293 (405)
                       ++...    +.+.. ++++|+++++.|.
T Consensus       135 ~~~v~~~v~~i~~~~-~G~IDiLVNNAG~  162 (422)
T 3s8m_A          135 DAARAQVIELIKTEM-GGQVDLVVYSLAS  162 (422)
T ss_dssp             HHHHHHHHHHHHHHS-CSCEEEEEECCCC
T ss_pred             HHHHHHHHHHHHHHc-CCCCCEEEEcCcc
Confidence             22222    33332 1579999999875

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=96.53  E-value=0.014  Score=53.10  Aligned_cols=75  Identities=15%  Similarity=0.116  Sum_probs=47.7

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCcchHHHHHHHHHcC--Cc-EEeChhhHHH-HhhhcCCCCCcE
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLG--AD-YVFTEEELRN-ISRDASIPKPKL  286 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~~~~~~~~~~~~lg--~~-~v~~~~d~~~-i~~~t~g~g~Dv  286 (405)
                      -.|.++||.|+ |++|.+++..+...|++ ++++.++.++.++..+.+...+  .. .+.+.++..+ +.      .+|+
T Consensus       125 l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~------~~Di  197 (283)
T 3jyo_A          125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIA------AADG  197 (283)
T ss_dssp             CCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHH------HSSE
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHh------cCCE
Confidence            46899999999 89999999999999995 6666555443333333333221  12 1233334444 33      3699


Q ss_pred             EEECCCc
Q psy2960         287 ALNCVGG  293 (405)
Q Consensus       287 vld~~g~  293 (405)
                      ||+|++.
T Consensus       198 VInaTp~  204 (283)
T 3jyo_A          198 VVNATPM  204 (283)
T ss_dssp             EEECSST
T ss_pred             EEECCCC
Confidence            9999863

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=96.53  E-value=0.005  Score=57.40  Aligned_cols=78  Identities=10%  Similarity=0.114  Sum_probs=49.5

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc------CCcE-E--eChhh---HHH-HhhhcC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL------GADY-V--FTEEE---LRN-ISRDAS  280 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l------g~~~-v--~~~~d---~~~-i~~~t~  280 (405)
                      |++|||.||+|++|.+.+..+...|++++.+.++.+..+...+....+      +... +  .|-.+   +.. +.+. .
T Consensus         2 ~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~-~   80 (327)
T 1jtv_A            2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERV-T   80 (327)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTC-T
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHH-h
Confidence            678999999999999999999999999888765543322222222222      2221 2  23332   333 3332 2


Q ss_pred             CCCCcEEEECCC
Q psy2960         281 IPKPKLALNCVG  292 (405)
Q Consensus       281 g~g~Dvvld~~g  292 (405)
                      ...+|++|++.|
T Consensus        81 ~g~iD~lVnnAG   92 (327)
T 1jtv_A           81 EGRVDVLVCNAG   92 (327)
T ss_dssp             TSCCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            357999999987

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=96.51  E-value=0.008  Score=55.06  Aligned_cols=95  Identities=16%  Similarity=0.241  Sum_probs=60.1

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcch--HHHHH---HHHHcCCcEE-eChhhHHHHhhhcCCCCCcEE
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDI--DKLKS---YLKSLGADYV-FTEEELRNISRDASIPKPKLA  287 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~--~~~~~---~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvv  287 (405)
                      ..+|||.||+|.+|...++.+...|.+|++++++....  ..+.+   .+...|...+ .|..|.+.+.+..  .++|+|
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~--~~~d~v   81 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAV--KNVDVV   81 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHH--HTCSEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHH--cCCCEE
Confidence            46799999999999999999999999999998764321  22222   2334465544 2444433333332  258999


Q ss_pred             EECCCchh---HHHHHHhccc---CCEEE
Q psy2960         288 LNCVGGNS---ATNLLRTLVS---KGVMV  310 (405)
Q Consensus       288 ld~~g~~~---~~~~~~~l~~---~G~~v  310 (405)
                      |.+++...   ....++.++.   -++|+
T Consensus        82 i~~a~~~~~~~~~~l~~aa~~~g~v~~~v  110 (308)
T 1qyc_A           82 ISTVGSLQIESQVNIIKAIKEVGTVKRFF  110 (308)
T ss_dssp             EECCCGGGSGGGHHHHHHHHHHCCCSEEE
T ss_pred             EECCcchhhhhHHHHHHHHHhcCCCceEe
Confidence            99998532   2334444433   24776

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=96.51  E-value=0.0044  Score=55.64  Aligned_cols=80  Identities=11%  Similarity=0.093  Sum_probs=50.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHH-HHHHHHHcCCcEE---eChhh---HHH-Hhhhc-CCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDK-LKSYLKSLGADYV---FTEEE---LRN-ISRDA-SIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~-~~~~~~~lg~~~v---~~~~d---~~~-i~~~t-~g~g  283 (405)
                      .++++||.||+|++|.+.++.+...|++|+++.++.+...+ ..+...+.+....   .|-.+   ... +.+.. ..++
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   85 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHFGK   85 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            46899999999999999999999999999998766543222 1222223333221   23222   222 22111 1247


Q ss_pred             CcEEEECCC
Q psy2960         284 PKLALNCVG  292 (405)
Q Consensus       284 ~Dvvld~~g  292 (405)
                      +|++|++.|
T Consensus        86 id~lv~~Ag   94 (264)
T 3i4f_A           86 IDFLINNAG   94 (264)
T ss_dssp             CCEEECCCC
T ss_pred             CCEEEECCc
Confidence            999999998

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=96.49  E-value=0.0094  Score=59.10  Aligned_cols=83  Identities=18%  Similarity=0.244  Sum_probs=54.4

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCc---chHHHHHHHHHcCCcEEe---ChhhHHHHhhhcCCC
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRD---DIDKLKSYLKSLGADYVF---TEEELRNISRDASIP  282 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~---~~~~~~~~~~~lg~~~v~---~~~d~~~i~~~t~g~  282 (405)
                      .++++.+|||.|++|++|...+..+...|++ ++.+.++..   ..++..+.+.+.|....+   |-.|.+.+.+.....
T Consensus       255 ~~~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~  334 (511)
T 2z5l_A          255 SWQPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAY  334 (511)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHS
T ss_pred             CcCCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcC
Confidence            4678999999999999999999888889996 566665542   223444555666754322   333322222221115


Q ss_pred             CCcEEEECCC
Q psy2960         283 KPKLALNCVG  292 (405)
Q Consensus       283 g~Dvvld~~g  292 (405)
                      .+|+||++.|
T Consensus       335 ~ld~VVh~AG  344 (511)
T 2z5l_A          335 PPNAVFHTAG  344 (511)
T ss_dssp             CCSEEEECCC
T ss_pred             CCcEEEECCc
Confidence            6899999988

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.48  E-value=0.019  Score=52.75  Aligned_cols=90  Identities=13%  Similarity=0.176  Sum_probs=59.0

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe-ChhhHHHHhhhcCCCCCcEEEECCCc
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVGG  293 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~-~~~d~~~i~~~t~g~g~Dvvld~~g~  293 (405)
                      .+|||.||+|.+|...++.+...|.+|++++++.+. .   + +.  +...+. |.. .+.+.+..  .++|+||.+.+.
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~---~-~~--~~~~~~~Dl~-~~~~~~~~--~~~d~Vih~a~~   72 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGN-K---A-IN--DYEYRVSDYT-LEDLINQL--NDVDAVVHLAAT   72 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC------------CCEEEECCCC-HHHHHHHT--TTCSEEEECCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCc-c---c-CC--ceEEEEcccc-HHHHHHhh--cCCCEEEEcccc
Confidence            689999999999999999999999999999987332 1   1 22  444332 333 22254443  379999999874


Q ss_pred             hh--------------HHHHHHhcccC--CEEEEEec
Q psy2960         294 NS--------------ATNLLRTLVSK--GVMVTYGG  314 (405)
Q Consensus       294 ~~--------------~~~~~~~l~~~--G~~v~~g~  314 (405)
                      ..              ....++.++..  .+|+.++.
T Consensus        73 ~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS  109 (311)
T 3m2p_A           73 RGSQGKISEFHDNEILTQNLYDACYENNISNIVYAST  109 (311)
T ss_dssp             CCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            21              12334444443  47888875

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=96.48  E-value=0.0049  Score=54.13  Aligned_cols=73  Identities=16%  Similarity=0.232  Sum_probs=47.7

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc--E-EeChhhH---HH-HhhhcCCCCCcEE
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--Y-VFTEEEL---RN-ISRDASIPKPKLA  287 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~--~-v~~~~d~---~~-i~~~t~g~g~Dvv  287 (405)
                      ++|||.||+|++|.+.+..+...|++|+.+.++.+.   ..+...+++..  . ..|-.+.   .. +.+.  ...+|++
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~--~~~~d~l   76 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESK---LSTVTNCLSNNVGYRARDLASHQEVEQLFEQL--DSIPSTV   76 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHH---HHHHHHTCSSCCCEEECCTTCHHHHHHHHHSC--SSCCSEE
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHH---HHHHHHHHhhccCeEeecCCCHHHHHHHHHHH--hhcCCEE
Confidence            369999999999999999999999999998866433   22333444432  1 1243332   22 2222  2234999


Q ss_pred             EECCC
Q psy2960         288 LNCVG  292 (405)
Q Consensus       288 ld~~g  292 (405)
                      +++.|
T Consensus        77 v~~Ag   81 (230)
T 3guy_A           77 VHSAG   81 (230)
T ss_dssp             EECCC
T ss_pred             EEeCC
Confidence            99988

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=96.47  E-value=0.0054  Score=54.50  Aligned_cols=74  Identities=18%  Similarity=0.220  Sum_probs=49.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcC-CcEE-eChhhHH---HHhhhcCCCCCcEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG-ADYV-FTEEELR---NISRDASIPKPKLA  287 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg-~~~v-~~~~d~~---~i~~~t~g~g~Dvv  287 (405)
                      .|+++||.||+|++|.+.++.+...|++|+++.++.++    .+.+.+++ ...+ .|-.+.+   ++.+.  -+++|++
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~~~id~l   78 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESK----LQELEKYPGIQTRVLDVTKKKQIDQFANE--VERLDVL   78 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HGGGGGSTTEEEEECCTTCHHHHHHHHHH--CSCCSEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHhccCceEEEeeCCCHHHHHHHHHH--hCCCCEE
Confidence            47899999999999999999999999999988765432    22221332 1111 2333322   22222  2478999


Q ss_pred             EECCC
Q psy2960         288 LNCVG  292 (405)
Q Consensus       288 ld~~g  292 (405)
                      +++.|
T Consensus        79 v~~Ag   83 (246)
T 2ag5_A           79 FNVAG   83 (246)
T ss_dssp             EECCC
T ss_pred             EECCc
Confidence            99987

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=96.47  E-value=0.0073  Score=55.68  Aligned_cols=74  Identities=9%  Similarity=0.129  Sum_probs=48.2

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEEEC
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALNC  290 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld~  290 (405)
                      ++-.+|||.||+|.+|...++.+...|++|+++.++.+. +.       ++...+ .|-.|.+.+.+...+.++|+||.+
T Consensus        10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-~~-------l~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~   81 (321)
T 2pk3_A           10 HGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA-KL-------PNVEMISLDIMDSQRVKKVISDIKPDYIFHL   81 (321)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC-CC-------TTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             cCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc-cc-------ceeeEEECCCCCHHHHHHHHHhcCCCEEEEc
Confidence            456899999999999999999999999999999876543 11       233222 233332222222222358999999


Q ss_pred             CCc
Q psy2960         291 VGG  293 (405)
Q Consensus       291 ~g~  293 (405)
                      .|.
T Consensus        82 A~~   84 (321)
T 2pk3_A           82 AAK   84 (321)
T ss_dssp             CSC
T ss_pred             Ccc
Confidence            874

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=96.46  E-value=0.0078  Score=55.99  Aligned_cols=73  Identities=16%  Similarity=0.085  Sum_probs=48.5

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEEECCCc
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALNCVGG  293 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld~~g~  293 (405)
                      -+|||.||+|.+|...++.+...|.+|++++++.+..+    .+...+...+ .|..|.+.+.+..  .++|+||.+.+.
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~----~l~~~~~~~~~~Dl~d~~~~~~~~--~~~d~vih~a~~   87 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQ----RLAYLEPECRVAEMLDHAGLERAL--RGLDGVIFSAGY   87 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGG----GGGGGCCEEEECCTTCHHHHHHHT--TTCSEEEEC---
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhh----hhccCCeEEEEecCCCHHHHHHHH--cCCCEEEECCcc
Confidence            47999999999999999999999999999987765421    1222244333 2434433344442  368999999873

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.45  E-value=0.0099  Score=52.49  Aligned_cols=77  Identities=22%  Similarity=0.210  Sum_probs=50.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcC--CcEEEEecCCcchHHHHHHHHHc-CCcE-E--eChhh---HHH----Hhhhc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSL-GADY-V--FTEEE---LRN----ISRDA  279 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G--~~v~~~~~~~~~~~~~~~~~~~l-g~~~-v--~~~~d---~~~----i~~~t  279 (405)
                      .+.+|||.||+|++|.+.++.+...|  ++|+++.++.+..+    .+.++ +... +  .|-.+   ...    +.+..
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~----~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKAT----ELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIV   77 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCH----HHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHH----HHHhccCCceEEEEeecCCHHHHHHHHHHHHHhc
Confidence            36789999999999999999999999  89999887755432    23333 2221 1  23222   222    22222


Q ss_pred             CCCCCcEEEECCCc
Q psy2960         280 SIPKPKLALNCVGG  293 (405)
Q Consensus       280 ~g~g~Dvvld~~g~  293 (405)
                      +..++|++|++.|.
T Consensus        78 g~~~id~li~~Ag~   91 (250)
T 1yo6_A           78 GSDGLSLLINNAGV   91 (250)
T ss_dssp             GGGCCCEEEECCCC
T ss_pred             CCCCCcEEEECCcc
Confidence            11269999999873

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=96.45  E-value=0.016  Score=51.50  Aligned_cols=78  Identities=15%  Similarity=0.172  Sum_probs=48.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCcchHHHHHHHHHc--CCcE-E--eCh----hhHHH-Hhhhc-C
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSL--GADY-V--FTE----EELRN-ISRDA-S  280 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~~~~~~~~~~~~l--g~~~-v--~~~----~d~~~-i~~~t-~  280 (405)
                      .|.+|||.||+|++|.+.++.+...|++ |+++.++.+.  ...+.+.+.  +... +  .|-    ++... +.+.. .
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~--~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP--TALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH--HHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchH--HHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHh
Confidence            4789999999999999999999999997 7777665432  222333332  2221 1  232    22222 22111 0


Q ss_pred             CCCCcEEEECCC
Q psy2960         281 IPKPKLALNCVG  292 (405)
Q Consensus       281 g~g~Dvvld~~g  292 (405)
                      .+++|++|++.|
T Consensus        82 ~g~id~lv~~Ag   93 (254)
T 1sby_A           82 LKTVDILINGAG   93 (254)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCc
Confidence            246899999998

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=96.44  E-value=0.0074  Score=50.83  Aligned_cols=101  Identities=15%  Similarity=0.169  Sum_probs=63.7

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEE
Q psy2960         209 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLA  287 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvv  287 (405)
                      ..+++|++||=.|+  |.|..+..+|+. +.+|+++--+++..+...+.++..|.+.+ +-..+...+.... ...+|+|
T Consensus        18 ~~~~~~~~vLDiGc--G~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~-~~~fD~v   93 (185)
T 3mti_A           18 EVLDDESIVVDATM--GNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYV-REPIRAA   93 (185)
T ss_dssp             TTCCTTCEEEESCC--TTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTC-CSCEEEE
T ss_pred             HhCCCCCEEEEEcC--CCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhc-cCCcCEE
Confidence            57889999999998  458899999988 88888886554444444444455554322 1112222222222 4569998


Q ss_pred             EECCCc----------------hhHHHHHHhcccCCEEEEEe
Q psy2960         288 LNCVGG----------------NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       288 ld~~g~----------------~~~~~~~~~l~~~G~~v~~g  313 (405)
                      +-+.+-                ..+..+.+.|+|+|+++.+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  135 (185)
T 3mti_A           94 IFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMI  135 (185)
T ss_dssp             EEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEE
Confidence            865321                11245568999999998865

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=96.43  E-value=0.011  Score=50.21  Aligned_cols=102  Identities=17%  Similarity=0.200  Sum_probs=62.5

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHcC--CcEEEEecCCcchHHHHHHHHHcCC-cEE-eChhhHHHHhhhcCCCCC
Q psy2960         209 NSLSPGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLGA-DYV-FTEEELRNISRDASIPKP  284 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~aiqla~~~G--~~v~~~~~~~~~~~~~~~~~~~lg~-~~v-~~~~d~~~i~~~t~g~g~  284 (405)
                      ..+++|++||-.|+  |.|..+..+++..+  .+++++-.+++..+...+.+...|. +.+ +-..|...+.... ...+
T Consensus        18 ~~~~~~~~vLDlGc--G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~~f   94 (197)
T 3eey_A           18 MFVKEGDTVVDATC--GNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYI-DCPV   94 (197)
T ss_dssp             HHCCTTCEEEESCC--TTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTC-CSCE
T ss_pred             hcCCCCCEEEEcCC--CCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhc-cCCc
Confidence            46789999999998  34889999999865  5666664443333333344444454 211 2122222222111 3579


Q ss_pred             cEEEECCCc----------------hhHHHHHHhcccCCEEEEEe
Q psy2960         285 KLALNCVGG----------------NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       285 Dvvld~~g~----------------~~~~~~~~~l~~~G~~v~~g  313 (405)
                      |+|+-..+-                ..+..+.+.|+++|+++...
T Consensus        95 D~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~  139 (197)
T 3eey_A           95 KAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI  139 (197)
T ss_dssp             EEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence            999865432                34456789999999998765

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=96.42  E-value=0.0064  Score=53.43  Aligned_cols=102  Identities=11%  Similarity=0.126  Sum_probs=61.9

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCc--EEeChhhHHH-HhhhcCCCCC
Q psy2960         209 NSLSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGAD--YVFTEEELRN-ISRDASIPKP  284 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~--~v~~~~d~~~-i~~~t~g~g~  284 (405)
                      ....++++||-.|+ | .|..++.+++.. +.+++++-.+.+..+...+.+...|..  .-+...|... +........+
T Consensus        50 ~~~~~~~~vLdiG~-G-~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~f  127 (233)
T 2gpy_A           50 LKMAAPARILEIGT-A-IGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLF  127 (233)
T ss_dssp             HHHHCCSEEEEECC-T-TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCE
T ss_pred             HhccCCCEEEEecC-C-CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCc
Confidence            34568899999998 3 789999999988 566666644333333333344445642  1122223222 2322223579


Q ss_pred             cEEEECCCc----hhHHHHHHhcccCCEEEEE
Q psy2960         285 KLALNCVGG----NSATNLLRTLVSKGVMVTY  312 (405)
Q Consensus       285 Dvvld~~g~----~~~~~~~~~l~~~G~~v~~  312 (405)
                      |+|+.....    ..+..+.+.|+++|+++..
T Consensus       128 D~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          128 DVLFIDAAKGQYRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             EEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEE
T ss_pred             cEEEECCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            999876553    2334567889999999875

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=96.42  E-value=0.0025  Score=56.49  Aligned_cols=97  Identities=12%  Similarity=-0.002  Sum_probs=59.0

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH----cCCcEEeChhhHHHHhhhcCCCCCcE
Q psy2960         211 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS----LGADYVFTEEELRNISRDASIPKPKL  286 (405)
Q Consensus       211 ~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~----lg~~~v~~~~d~~~i~~~t~g~g~Dv  286 (405)
                      ..+|.+||-.|+  |.|..+..+++..+.+++++--+    +..++.+++    .+....+-..+...+........||.
T Consensus        58 ~~~G~rVLdiG~--G~G~~~~~~~~~~~~~v~~id~~----~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~  131 (236)
T 3orh_A           58 SSKGGRVLEVGF--GMAIAASKVQEAPIDEHWIIECN----DGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDG  131 (236)
T ss_dssp             TTTCEEEEEECC--TTSHHHHHHTTSCEEEEEEEECC----HHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEE
T ss_pred             ccCCCeEEEECC--CccHHHHHHHHhCCcEEEEEeCC----HHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCce
Confidence            468999999998  46888889988877777766433    333455544    33322222223333222222456888


Q ss_pred             E-EECCCc-----------hhHHHHHHhcccCCEEEEEe
Q psy2960         287 A-LNCVGG-----------NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       287 v-ld~~g~-----------~~~~~~~~~l~~~G~~v~~g  313 (405)
                      | +|+...           ..+....+.|+|||+|+.+.
T Consensus       132 i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          132 ILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             EEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             EEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence            7 455432           12234678999999998764

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=96.42  E-value=0.016  Score=53.44  Aligned_cols=88  Identities=18%  Similarity=0.219  Sum_probs=51.0

Q ss_pred             HHHHHhhcCC-CCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecC---CcchHHHHHHHHH-cCCc-EEeChhhHHH
Q psy2960         202 YRMLKDYNSL-SPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRN---RDDIDKLKSYLKS-LGAD-YVFTEEELRN  274 (405)
Q Consensus       202 ~~al~~~~~~-~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~---~~~~~~~~~~~~~-lg~~-~v~~~~d~~~  274 (405)
                      ..+|.. .++ -.|+++||.|+ |++|.+++..+...|+ +++++.++   .++.++..+.+.. .+.. .+.+.++.++
T Consensus       142 ~~~L~~-~~~~l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~  219 (315)
T 3tnl_A          142 MRALKE-AGHDIIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQ  219 (315)
T ss_dssp             HHHHHH-TTCCCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHH
T ss_pred             HHHHHH-cCCCccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHH
Confidence            344544 233 36899999998 8999999999999999 66666666   2222222222222 2322 2333333222


Q ss_pred             HhhhcCCCCCcEEEECCCc
Q psy2960         275 ISRDASIPKPKLALNCVGG  293 (405)
Q Consensus       275 i~~~t~g~g~Dvvld~~g~  293 (405)
                      +.+.  -..+|+||+|++.
T Consensus       220 l~~~--l~~aDiIINaTp~  236 (315)
T 3tnl_A          220 LRKE--IAESVIFTNATGV  236 (315)
T ss_dssp             HHHH--HHTCSEEEECSST
T ss_pred             HHhh--hcCCCEEEECccC
Confidence            2111  1257999999863

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=96.41  E-value=0.023  Score=53.93  Aligned_cols=83  Identities=14%  Similarity=0.170  Sum_probs=54.4

Q ss_pred             cCC-CCCCEEEEeCCCcHHHHHHHHHHHH-cCCcEEEEecCCcchH------------HHHHHHHHcCCcEEe---Ch--
Q psy2960         209 NSL-SPGDVVIQNGANSACGQNVIQIARH-WGLKTINIVRNRDDID------------KLKSYLKSLGADYVF---TE--  269 (405)
Q Consensus       209 ~~~-~~g~~VLI~ga~G~vG~~aiqla~~-~G~~v~~~~~~~~~~~------------~~~~~~~~lg~~~v~---~~--  269 (405)
                      ..+ ..|+++||.||++|+|.+.+..+.. .|++|+++.++.+..+            ...+.+++.|.....   |-  
T Consensus        41 ~~~~~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd  120 (405)
T 3zu3_A           41 GPIANGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFS  120 (405)
T ss_dssp             CCCTTCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTS
T ss_pred             CCcCCCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCC
Confidence            455 5678899999999999998887777 9999998876544321            122344566654332   32  


Q ss_pred             -hhHHH----HhhhcCCCCCcEEEECCCc
Q psy2960         270 -EELRN----ISRDASIPKPKLALNCVGG  293 (405)
Q Consensus       270 -~d~~~----i~~~t~g~g~Dvvld~~g~  293 (405)
                       ++...    +.+.  .+++|++++++|.
T Consensus       121 ~~~v~~~v~~i~~~--~G~IDiLVNNAG~  147 (405)
T 3zu3_A          121 DEIKQLTIDAIKQD--LGQVDQVIYSLAS  147 (405)
T ss_dssp             HHHHHHHHHHHHHH--TSCEEEEEECCCC
T ss_pred             HHHHHHHHHHHHHH--cCCCCEEEEcCcc
Confidence             22222    3332  3579999999875

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=96.41  E-value=0.015  Score=52.53  Aligned_cols=90  Identities=10%  Similarity=0.065  Sum_probs=55.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC--c-EEeChhhHHHHhhhcCCCCCcEEEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA--D-YVFTEEELRNISRDASIPKPKLALN  289 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~--~-~v~~~~d~~~i~~~t~g~g~Dvvld  289 (405)
                      +|.+|+|.|+ |++|.++++.+...|++++++.++.++.   .+.+.+++.  . .+.+   .+++.   . .++|+|++
T Consensus       118 ~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~~---~~la~~~~~~~~~~~~~---~~~~~---~-~~~DivVn  186 (271)
T 1nyt_A          118 PGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRA---EELAKLFAHTGSIQALS---MDELE---G-HEFDLIIN  186 (271)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHH---HHHHHHTGGGSSEEECC---SGGGT---T-CCCSEEEE
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHHH---HHHHHHhhccCCeeEec---HHHhc---c-CCCCEEEE
Confidence            6899999999 8999999999999998877775553322   233444443  1 1222   11121   1 57899999


Q ss_pred             CCCchhHHH----HHHhcccCCEEEEEe
Q psy2960         290 CVGGNSATN----LLRTLVSKGVMVTYG  313 (405)
Q Consensus       290 ~~g~~~~~~----~~~~l~~~G~~v~~g  313 (405)
                      |++......    ....++++..++.+.
T Consensus       187 ~t~~~~~~~~~~i~~~~l~~~~~v~D~~  214 (271)
T 1nyt_A          187 ATSSGISGDIPAIPSSLIHPGIYCYDMF  214 (271)
T ss_dssp             CCSCGGGTCCCCCCGGGCCTTCEEEESC
T ss_pred             CCCCCCCCCCCCCCHHHcCCCCEEEEec
Confidence            998654311    012345555555544

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=96.37  E-value=0.011  Score=52.12  Aligned_cols=73  Identities=16%  Similarity=0.085  Sum_probs=49.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALN  289 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~--G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld  289 (405)
                      .+.+|||.||+|++|...++.+...  |++|+++.++.++    .+.+ .-+...+ .|..|.+.+.+..  .++|+||+
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~----~~~~-~~~~~~~~~D~~d~~~~~~~~--~~~d~vi~   75 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQG----KEKI-GGEADVFIGDITDADSINPAF--QGIDALVI   75 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHH----HHHT-TCCTTEEECCTTSHHHHHHHH--TTCSEEEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCc----hhhc-CCCeeEEEecCCCHHHHHHHH--cCCCEEEE
Confidence            4689999999999999999999888  8999998865422    2211 1223333 2444433343332  25899999


Q ss_pred             CCC
Q psy2960         290 CVG  292 (405)
Q Consensus       290 ~~g  292 (405)
                      +.|
T Consensus        76 ~a~   78 (253)
T 1xq6_A           76 LTS   78 (253)
T ss_dssp             CCC
T ss_pred             ecc
Confidence            987

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=96.37  E-value=0.078  Score=49.45  Aligned_cols=91  Identities=11%  Similarity=0.086  Sum_probs=59.0

Q ss_pred             CEEEEeCCCcHHHHHHHHHHH-H-cCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         215 DVVIQNGANSACGQNVIQIAR-H-WGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~-~-~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      -+|.|.|+ |.+|...++.++ . -+++++++++....  ...+.++++|...+++  +..++   .....+|+|+.|+.
T Consensus         9 ~~v~iiG~-G~ig~~~~~~l~~~~~~~~~vav~d~~~~--~~~~~a~~~g~~~~~~--~~~~~---l~~~~~D~V~i~tp   80 (346)
T 3cea_A            9 LRAAIIGL-GRLGERHARHLVNKIQGVKLVAACALDSN--QLEWAKNELGVETTYT--NYKDM---IDTENIDAIFIVAP   80 (346)
T ss_dssp             EEEEEECC-STTHHHHHHHHHHTCSSEEEEEEECSCHH--HHHHHHHTTCCSEEES--CHHHH---HTTSCCSEEEECSC
T ss_pred             ceEEEEcC-CHHHHHHHHHHHhcCCCcEEEEEecCCHH--HHHHHHHHhCCCcccC--CHHHH---hcCCCCCEEEEeCC
Confidence            47999999 999998888776 4 47788887754322  2234456678765553  23332   12347899999998


Q ss_pred             chhH-HHHHHhcccCCEEEEEec
Q psy2960         293 GNSA-TNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       293 ~~~~-~~~~~~l~~~G~~v~~g~  314 (405)
                      ...- ..+..+++. |+-+.+.+
T Consensus        81 ~~~h~~~~~~al~~-G~~v~~eK  102 (346)
T 3cea_A           81 TPFHPEMTIYAMNA-GLNVFCEK  102 (346)
T ss_dssp             GGGHHHHHHHHHHT-TCEEEECS
T ss_pred             hHhHHHHHHHHHHC-CCEEEEcC
Confidence            7654 445677766 45555543

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=96.37  E-value=0.017  Score=52.35  Aligned_cols=77  Identities=8%  Similarity=0.066  Sum_probs=51.0

Q ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHH-HHcCCcEEe--Chh---hHHH----HhhhcC
Q psy2960         213 PGDVVIQNGAN--SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVF--TEE---ELRN----ISRDAS  280 (405)
Q Consensus       213 ~g~~VLI~ga~--G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~-~~lg~~~v~--~~~---d~~~----i~~~t~  280 (405)
                      .|++|||.||+  +|+|.+.++.+...|++|+.+.++. . ++.++.+ .+.+.-.++  |-.   +...    +.+.  
T Consensus        25 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~-~-~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~--  100 (280)
T 3nrc_A           25 AGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ-F-KDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKV--  100 (280)
T ss_dssp             TTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT-C-HHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHH--
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch-H-HHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHH--
Confidence            57999999998  6699999999999999999888765 2 2333333 334432232  322   2222    2222  


Q ss_pred             CCCCcEEEECCCc
Q psy2960         281 IPKPKLALNCVGG  293 (405)
Q Consensus       281 g~g~Dvvld~~g~  293 (405)
                      ...+|+++++.|.
T Consensus       101 ~g~id~li~nAg~  113 (280)
T 3nrc_A          101 WDGLDAIVHSIAF  113 (280)
T ss_dssp             CSSCCEEEECCCC
T ss_pred             cCCCCEEEECCcc
Confidence            3479999999873

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=96.36  E-value=0.012  Score=59.59  Aligned_cols=79  Identities=16%  Similarity=0.095  Sum_probs=53.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC---------cchHHHHHHHHHcCCcEEeChhh---HHH----Hh
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR---------DDIDKLKSYLKSLGADYVFTEEE---LRN----IS  276 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~---------~~~~~~~~~~~~lg~~~v~~~~d---~~~----i~  276 (405)
                      .|++++|.||++|+|.+.++.+...|++|+++.++.         +..++..+.+++.|...+.|..|   ...    +.
T Consensus         7 ~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~~~~d~~d~~~~~~~v~~~~   86 (604)
T 2et6_A            7 KDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGVAVADYNNVLDGDKIVETAV   86 (604)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTTCEEEEECCCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcCCeEEEEcCCHHHHHHHHHHHH
Confidence            578999999999999999999999999998875432         22233344445556555555333   222    22


Q ss_pred             hhcCCCCCcEEEECCCc
Q psy2960         277 RDASIPKPKLALNCVGG  293 (405)
Q Consensus       277 ~~t~g~g~Dvvld~~g~  293 (405)
                      +.  .+.+|+++++.|.
T Consensus        87 ~~--~G~iDiLVnNAGi  101 (604)
T 2et6_A           87 KN--FGTVHVIINNAGI  101 (604)
T ss_dssp             HH--HSCCCEEEECCCC
T ss_pred             HH--cCCCCEEEECCCC
Confidence            22  2469999999983

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=96.36  E-value=0.0034  Score=56.53  Aligned_cols=95  Identities=13%  Similarity=0.061  Sum_probs=64.1

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEEC
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNC  290 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~  290 (405)
                      .++.+||..|+ |. |..+..+++.. |++++++--    .+..++.+++.+....+...|...+.  .....+|+|+..
T Consensus        84 ~~~~~vLdiG~-G~-G~~~~~l~~~~~~~~v~~vD~----s~~~~~~a~~~~~~~~~~~~d~~~~~--~~~~~fD~v~~~  155 (269)
T 1p91_A           84 DKATAVLDIGC-GE-GYYTHAFADALPEITTFGLDV----SKVAIKAAAKRYPQVTFCVASSHRLP--FSDTSMDAIIRI  155 (269)
T ss_dssp             TTCCEEEEETC-TT-STTHHHHHHTCTTSEEEEEES----CHHHHHHHHHHCTTSEEEECCTTSCS--BCTTCEEEEEEE
T ss_pred             CCCCEEEEECC-CC-CHHHHHHHHhCCCCeEEEEeC----CHHHHHHHHHhCCCcEEEEcchhhCC--CCCCceeEEEEe
Confidence            68899999999 55 99999999987 777777743    34456666665533222112211110  113469999976


Q ss_pred             CCchhHHHHHHhcccCCEEEEEec
Q psy2960         291 VGGNSATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       291 ~g~~~~~~~~~~l~~~G~~v~~g~  314 (405)
                      .....+....+.|+|+|+++....
T Consensus       156 ~~~~~l~~~~~~L~pgG~l~~~~~  179 (269)
T 1p91_A          156 YAPCKAEELARVVKPGGWVITATP  179 (269)
T ss_dssp             SCCCCHHHHHHHEEEEEEEEEEEE
T ss_pred             CChhhHHHHHHhcCCCcEEEEEEc
Confidence            655667788899999999988763

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=96.33  E-value=0.0046  Score=55.84  Aligned_cols=73  Identities=15%  Similarity=0.236  Sum_probs=48.8

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhh---HHH----HhhhcCCC
Q psy2960         211 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEE---LRN----ISRDASIP  282 (405)
Q Consensus       211 ~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d---~~~----i~~~t~g~  282 (405)
                      -..|++|||.||+|++|.+.++.+...|++|+.+.++.+..       .. ....+ .|-.|   ...    +.+.  .+
T Consensus        11 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~-------~~-~~~~~~~Dv~~~~~v~~~~~~~~~~--~g   80 (269)
T 3vtz_A           11 EFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSD-------VN-VSDHFKIDVTNEEEVKEAVEKTTKK--YG   80 (269)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--C-------TT-SSEEEECCTTCHHHHHHHHHHHHHH--HS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhc-------cC-ceeEEEecCCCHHHHHHHHHHHHHH--cC
Confidence            34789999999999999999999999999999987664321       11 12222 23222   222    2222  24


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      ++|+++++.|.
T Consensus        81 ~iD~lv~nAg~   91 (269)
T 3vtz_A           81 RIDILVNNAGI   91 (269)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            78999999983

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=96.33  E-value=0.0098  Score=53.59  Aligned_cols=36  Identities=19%  Similarity=0.251  Sum_probs=32.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      .++++||.||+|++|.+.++.+...|++|+.+.++.
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~   50 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRV   50 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            478999999999999999999999999999987653

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=96.31  E-value=0.01  Score=53.17  Aligned_cols=94  Identities=11%  Similarity=0.136  Sum_probs=67.1

Q ss_pred             ccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh
Q psy2960         192 SGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE  271 (405)
Q Consensus       192 a~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d  271 (405)
                      ..+||....+...+....  -.|.+|+|.|+++-+|..+++++...||+|+++-+..                     .+
T Consensus       130 ~~~PcTp~gv~~lL~~~~--l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t---------------------~~  186 (276)
T 3ngx_A          130 FLVPATPRAVIDIMDYYG--YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT---------------------KD  186 (276)
T ss_dssp             SSCCHHHHHHHHHHHHHT--CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------------------SC
T ss_pred             CCCCCcHHHHHHHHHHhC--cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc---------------------cc
Confidence            456666666677776654  5899999999977799999999999999987664221                     22


Q ss_pred             HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEecc
Q psy2960         272 LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       272 ~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~  315 (405)
                      ..+ +++      .|+||.++|.+.+.. -+.++++..++.+|..
T Consensus       187 L~~~~~~------ADIVI~Avg~p~~I~-~~~vk~GavVIDvgi~  224 (276)
T 3ngx_A          187 IGSMTRS------SKIVVVAVGRPGFLN-REMVTPGSVVIDVGIN  224 (276)
T ss_dssp             HHHHHHH------SSEEEECSSCTTCBC-GGGCCTTCEEEECCCE
T ss_pred             HHHhhcc------CCEEEECCCCCcccc-HhhccCCcEEEEeccC
Confidence            222 332      599999998764321 2557888888888843

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=96.28  E-value=0.0062  Score=54.45  Aligned_cols=72  Identities=13%  Similarity=0.062  Sum_probs=48.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChh---hHHH-Hhhhc-CCCCCcE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEE---ELRN-ISRDA-SIPKPKL  286 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~---d~~~-i~~~t-~g~g~Dv  286 (405)
                      .++++||.||+|++|.+.++.+...|++|+++.++.++.++         ...+ .|-.   +... +.+.. ..+.+|+
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~---------~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~   90 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPEG---------FLAVKCDITDTEQVEQAYKEIEETHGPVEV   90 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCTT---------SEEEECCTTSHHHHHHHHHHHHHHTCSCSE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhcc---------ceEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            47899999999999999999999999999999876543211         2111 2322   2222 22211 1346899


Q ss_pred             EEECCCc
Q psy2960         287 ALNCVGG  293 (405)
Q Consensus       287 vld~~g~  293 (405)
                      ++++.|.
T Consensus        91 lv~nAg~   97 (253)
T 2nm0_A           91 LIANAGV   97 (253)
T ss_dssp             EEEECSC
T ss_pred             EEECCCC
Confidence            9998873

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=96.24  E-value=0.023  Score=50.51  Aligned_cols=103  Identities=16%  Similarity=0.198  Sum_probs=65.9

Q ss_pred             HhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHcCCcE--EeChhhHHHHhhhcCC
Q psy2960         206 KDYNSLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADY--VFTEEELRNISRDASI  281 (405)
Q Consensus       206 ~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~--G~~v~~~~~~~~~~~~~~~~~~~lg~~~--v~~~~d~~~i~~~t~g  281 (405)
                      ....++++|++||-.|+ | .|..+..+++.+  +.+++++-.+++..+...+.++..|.+.  -+-..|+.+   ....
T Consensus        86 ~~~~~~~~~~~vldiG~-G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~  160 (255)
T 3mb5_A           86 VAYAGISPGDFIVEAGV-G-SGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYE---GIEE  160 (255)
T ss_dssp             HHHTTCCTTCEEEEECC-T-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGG---CCCC
T ss_pred             HHhhCCCCCCEEEEecC-C-chHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhh---ccCC
Confidence            34478899999999998 3 489999999986  4566666433333233333334445432  222223222   2224


Q ss_pred             CCCcEEEECCCch--hHHHHHHhcccCCEEEEEe
Q psy2960         282 PKPKLALNCVGGN--SATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       282 ~g~Dvvld~~g~~--~~~~~~~~l~~~G~~v~~g  313 (405)
                      ..+|+|+......  .+..+.+.|+++|+++...
T Consensus       161 ~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  194 (255)
T 3mb5_A          161 ENVDHVILDLPQPERVVEHAAKALKPGGFFVAYT  194 (255)
T ss_dssp             CSEEEEEECSSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             CCcCEEEECCCCHHHHHHHHHHHcCCCCEEEEEE
Confidence            4699999877654  5667889999999998764

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=96.24  E-value=0.022  Score=51.68  Aligned_cols=92  Identities=12%  Similarity=0.086  Sum_probs=54.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                      .|.+++|.|+ |++|.+++..+...|+ +++++.++.++.++..+.+...+.-.+.+.++   +     ..++|+||+|+
T Consensus       125 ~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~---l-----~~~aDiIInaT  195 (281)
T 3o8q_A          125 KGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQ---L-----KQSYDVIINST  195 (281)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGG---C-----CSCEEEEEECS
T ss_pred             cCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHH---h-----cCCCCEEEEcC
Confidence            6899999999 8999999998889997 66666655443332222222222122332222   1     14789999999


Q ss_pred             CchhHHH----HHHhcccCCEEEEEe
Q psy2960         292 GGNSATN----LLRTLVSKGVMVTYG  313 (405)
Q Consensus       292 g~~~~~~----~~~~l~~~G~~v~~g  313 (405)
                      +......    ....++++..++.+.
T Consensus       196 p~gm~~~~~~l~~~~l~~~~~V~Dlv  221 (281)
T 3o8q_A          196 SASLDGELPAIDPVIFSSRSVCYDMM  221 (281)
T ss_dssp             CCCC----CSCCGGGEEEEEEEEESC
T ss_pred             cCCCCCCCCCCCHHHhCcCCEEEEec
Confidence            7543221    124455555555554

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=96.23  E-value=0.021  Score=52.54  Aligned_cols=87  Identities=13%  Similarity=0.201  Sum_probs=63.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      .|.+|.|.|. |.+|...++.++.+|++|++..++.+.     +.+.+.|++. .   +++++.+     ..|+|+.++.
T Consensus       141 ~g~~vgIiG~-G~IG~~~A~~l~~~G~~V~~~d~~~~~-----~~~~~~g~~~-~---~l~ell~-----~aDvV~l~~p  205 (307)
T 1wwk_A          141 EGKTIGIIGF-GRIGYQVAKIANALGMNILLYDPYPNE-----ERAKEVNGKF-V---DLETLLK-----ESDVVTIHVP  205 (307)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCH-----HHHHHTTCEE-C---CHHHHHH-----HCSEEEECCC
T ss_pred             CCceEEEEcc-CHHHHHHHHHHHHCCCEEEEECCCCCh-----hhHhhcCccc-c---CHHHHHh-----hCCEEEEecC
Confidence            6889999999 999999999999999999888765432     2455677743 2   2333221     3599999887


Q ss_pred             chh-----H-HHHHHhcccCCEEEEEec
Q psy2960         293 GNS-----A-TNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       293 ~~~-----~-~~~~~~l~~~G~~v~~g~  314 (405)
                      ...     + ...+..+++++.++.++.
T Consensus       206 ~~~~t~~li~~~~l~~mk~ga~lin~ar  233 (307)
T 1wwk_A          206 LVESTYHLINEERLKLMKKTAILINTSR  233 (307)
T ss_dssp             CSTTTTTCBCHHHHHHSCTTCEEEECSC
T ss_pred             CChHHhhhcCHHHHhcCCCCeEEEECCC
Confidence            422     1 345788999999998874

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=96.20  E-value=0.023  Score=57.59  Aligned_cols=76  Identities=16%  Similarity=0.182  Sum_probs=51.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Ch-hhHHH----HhhhcCCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TE-EELRN----ISRDASIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~-~d~~~----i~~~t~g~g~  284 (405)
                      .|+++||.||++|+|.+.++.+...|++|++..+..  .++..+.+++.|...+.   |- .+...    +.+.  .+.+
T Consensus       321 ~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~--~~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~~--~G~i  396 (604)
T 2et6_A          321 KDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKD--ATKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDK--YGTI  396 (604)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSC--CHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHH--HSCC
T ss_pred             CCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCcc--HHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHHh--cCCC
Confidence            478999999999999999999999999988865322  23334455556654443   33 23222    2222  2469


Q ss_pred             cEEEECCC
Q psy2960         285 KLALNCVG  292 (405)
Q Consensus       285 Dvvld~~g  292 (405)
                      |+++++.|
T Consensus       397 DiLVnNAG  404 (604)
T 2et6_A          397 DILVNNAG  404 (604)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999998

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=96.20  E-value=0.021  Score=59.73  Aligned_cols=83  Identities=16%  Similarity=0.232  Sum_probs=55.9

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHH-HcCCc-EEEEecC---CcchHHHHHHHHHcCCcEEe---Chh---hHHH-Hhhh
Q psy2960         211 LSPGDVVIQNGANSACGQNVIQIAR-HWGLK-TINIVRN---RDDIDKLKSYLKSLGADYVF---TEE---ELRN-ISRD  278 (405)
Q Consensus       211 ~~~g~~VLI~ga~G~vG~~aiqla~-~~G~~-v~~~~~~---~~~~~~~~~~~~~lg~~~v~---~~~---d~~~-i~~~  278 (405)
                      +.++.++||.|++||+|.+.++... ..|++ ++.+.++   .+..++..+.+++.|....+   |-.   +... +.+.
T Consensus       527 ~~~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~  606 (795)
T 3slk_A          527 WDAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVADRETLAKVLASI  606 (795)
T ss_dssp             CCTTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred             cccccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHH
Confidence            4678999999999999999888775 79997 5555555   23334555666677875433   322   2333 4433


Q ss_pred             cCCCCCcEEEECCCc
Q psy2960         279 ASIPKPKLALNCVGG  293 (405)
Q Consensus       279 t~g~g~Dvvld~~g~  293 (405)
                      .....+|++|++.|.
T Consensus       607 ~~~~~id~lVnnAGv  621 (795)
T 3slk_A          607 PDEHPLTAVVHAAGV  621 (795)
T ss_dssp             CTTSCEEEEEECCCC
T ss_pred             HHhCCCEEEEECCCc
Confidence            323378999999884

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=96.19  E-value=0.059  Score=46.95  Aligned_cols=102  Identities=16%  Similarity=0.070  Sum_probs=62.4

Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHcCCc--EE-eChhhHHH-HhhhcC
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGAD--YV-FTEEELRN-ISRDAS  280 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~--G~~v~~~~~~~~~~~~~~~~~~~lg~~--~v-~~~~d~~~-i~~~t~  280 (405)
                      ...+.+++.+||=.|+  |.|..++.+|+.+  +++++++-.+++..+...+.+...|..  .+ +-..|..+ +... .
T Consensus        50 ~~~~~~~~~~vLdiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~-~  126 (221)
T 3dr5_A           50 ATTNGNGSTGAIAITP--AAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRL-A  126 (221)
T ss_dssp             HHSCCTTCCEEEEEST--THHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGS-C
T ss_pred             HhhCCCCCCCEEEEcC--CchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHh-c
Confidence            3345556679999987  6799999999987  567766644433333334445555643  22 22223223 2222 1


Q ss_pred             CCCCcEEEECCCch----hHHHHHHhcccCCEEEE
Q psy2960         281 IPKPKLALNCVGGN----SATNLLRTLVSKGVMVT  311 (405)
Q Consensus       281 g~g~Dvvld~~g~~----~~~~~~~~l~~~G~~v~  311 (405)
                      ...||+|+-.....    .+..+.+.|+|||.++.
T Consensus       127 ~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~  161 (221)
T 3dr5_A          127 NDSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVL  161 (221)
T ss_dssp             TTCEEEEEECCCTTTHHHHHHHHHHHEEEEEEEEE
T ss_pred             CCCcCeEEEcCcHHHHHHHHHHHHHHcCCCcEEEE
Confidence            35799998654432    34456799999999886

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=96.19  E-value=0.02  Score=52.26  Aligned_cols=76  Identities=17%  Similarity=0.126  Sum_probs=53.0

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcC-CcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEEECC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G-~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                      ..+|||.||+|.+|...++.+...| .+|++++++.++..  .+.+...+...+ .|..|.+.+.+..  .++|+||.+.
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~--~~~l~~~~~~~~~~D~~d~~~l~~~~--~~~d~vi~~a   80 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKA--AKELRLQGAEVVQGDQDDQVIMELAL--NGAYATFIVT   80 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHH--HHHHHHTTCEEEECCTTCHHHHHHHH--TTCSEEEECC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHH--HHHHHHCCCEEEEecCCCHHHHHHHH--hcCCEEEEeC
Confidence            4789999999999999999888888 89999988765421  123334566544 2444433344433  3589999998


Q ss_pred             Cc
Q psy2960         292 GG  293 (405)
Q Consensus       292 g~  293 (405)
                      +.
T Consensus        81 ~~   82 (299)
T 2wm3_A           81 NY   82 (299)
T ss_dssp             CH
T ss_pred             CC
Confidence            74

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=96.18  E-value=0.016  Score=53.93  Aligned_cols=79  Identities=18%  Similarity=0.216  Sum_probs=49.3

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC-cchHHHHHHHHHcC-CcEE-eChhhHHHHhhhcCCCCCcEEEECC
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNR-DDIDKLKSYLKSLG-ADYV-FTEEELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~-~~~~~~~~~~~~lg-~~~v-~~~~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                      .+|||.||+|.+|...++.+...|.+|+++.+.. .......+.+...+ ...+ .|..|...+.+...+..+|+||.+.
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A   81 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLA   81 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             cEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEEEECC
Confidence            3799999999999999999988999999987632 22222233333333 2222 2333322222221112589999999


Q ss_pred             Cc
Q psy2960         292 GG  293 (405)
Q Consensus       292 g~  293 (405)
                      |.
T Consensus        82 ~~   83 (347)
T 1orr_A           82 GQ   83 (347)
T ss_dssp             CC
T ss_pred             cc
Confidence            84

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=96.18  E-value=0.012  Score=51.96  Aligned_cols=102  Identities=13%  Similarity=0.111  Sum_probs=62.2

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHcCCcE-E-eChhhHHH-HhhhcC---
Q psy2960         209 NSLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADY-V-FTEEELRN-ISRDAS---  280 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~aiqla~~~--G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v-~~~~d~~~-i~~~t~---  280 (405)
                      ....++++||-.|+  |.|..+..+++..  +.+++++-.+++..+...+.+...|.+. + +...|..+ +.+...   
T Consensus        56 ~~~~~~~~VLdiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~  133 (239)
T 2hnk_A           56 TKISGAKRIIEIGT--FTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKS  133 (239)
T ss_dssp             HHHHTCSEEEEECC--TTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSS
T ss_pred             HHhhCcCEEEEEeC--CCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcc
Confidence            34567899999998  4699999999998  4667666444333333334444456532 1 22222222 222211   


Q ss_pred             ----------C-CCCcEEEECCCchh----HHHHHHhcccCCEEEEE
Q psy2960         281 ----------I-PKPKLALNCVGGNS----ATNLLRTLVSKGVMVTY  312 (405)
Q Consensus       281 ----------g-~g~Dvvld~~g~~~----~~~~~~~l~~~G~~v~~  312 (405)
                                . ..+|+|+...+.+.    +..+.+.|+++|.++..
T Consensus       134 ~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~  180 (239)
T 2hnk_A          134 APSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPGGLLIAD  180 (239)
T ss_dssp             CCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEE
Confidence                      1 57999998766543    24567899999999874

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=96.18  E-value=0.01  Score=53.49  Aligned_cols=96  Identities=18%  Similarity=0.231  Sum_probs=66.1

Q ss_pred             ccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh
Q psy2960         192 SGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE  271 (405)
Q Consensus       192 a~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d  271 (405)
                      ..+||....+...+....---.|.+++|.|.++-+|..+++++...||+|+++-+..                     .+
T Consensus       139 ~~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t---------------------~~  197 (285)
T 3l07_A          139 CLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT---------------------TD  197 (285)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------------------SS
T ss_pred             CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc---------------------hh
Confidence            456666666666666543334899999999966699999999999999876553211                     12


Q ss_pred             HHHHhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEec
Q psy2960         272 LRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       272 ~~~i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~  314 (405)
                      ..+   .+  +..|+|+.++|.+.+. --+.++++-.++.+|.
T Consensus       198 L~~---~~--~~ADIVI~Avg~p~~I-~~~~vk~GavVIDvgi  234 (285)
T 3l07_A          198 LKS---HT--TKADILIVAVGKPNFI-TADMVKEGAVVIDVGI  234 (285)
T ss_dssp             HHH---HH--TTCSEEEECCCCTTCB-CGGGSCTTCEEEECCC
T ss_pred             HHH---hc--ccCCEEEECCCCCCCC-CHHHcCCCcEEEEecc
Confidence            222   11  2469999999976442 1256788888888884

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=96.17  E-value=0.0057  Score=54.69  Aligned_cols=75  Identities=15%  Similarity=0.308  Sum_probs=46.5

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcC--CcEEEEecCCcchHHHHHHHHHcCCcEEe---Chhh---HHH----HhhhcCC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLGADYVF---TEEE---LRN----ISRDASI  281 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G--~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~d---~~~----i~~~t~g  281 (405)
                      |+++||.||++++|.+.++.+...|  +.|+.+.++.+..   .+...++|....+   |-.|   ...    +.+.  .
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~---~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~--~   76 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPL---KKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKG--H   76 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHH---HHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHH--H
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHH---HHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHh--c
Confidence            6789999999999999987766664  6777776554332   2233344443222   3222   222    2222  2


Q ss_pred             CCCcEEEECCCc
Q psy2960         282 PKPKLALNCVGG  293 (405)
Q Consensus       282 ~g~Dvvld~~g~  293 (405)
                      +++|+++++.|.
T Consensus        77 g~id~lvnnAg~   88 (254)
T 3kzv_A           77 GKIDSLVANAGV   88 (254)
T ss_dssp             SCCCEEEEECCC
T ss_pred             CCccEEEECCcc
Confidence            479999999874

>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A

Probab=96.16  E-value=0.031  Score=52.74  Aligned_cols=82  Identities=17%  Similarity=0.129  Sum_probs=54.8

Q ss_pred             CCCCCEEEEeCCCcHHHHHH-HHHHHHcCCcEEEEecCCcchH------------HHHHHHHHcCCcEEe---Ch---hh
Q psy2960         211 LSPGDVVIQNGANSACGQNV-IQIARHWGLKTINIVRNRDDID------------KLKSYLKSLGADYVF---TE---EE  271 (405)
Q Consensus       211 ~~~g~~VLI~ga~G~vG~~a-iqla~~~G~~v~~~~~~~~~~~------------~~~~~~~~lg~~~v~---~~---~d  271 (405)
                      ...+++|||.|+++|+|+++ +.+|...|+.++++....+..+            ...+.+++.|...+.   |-   +.
T Consensus        47 ~~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~  126 (401)
T 4ggo_A           47 AKAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEI  126 (401)
T ss_dssp             SCCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHH
T ss_pred             cCCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHHH
Confidence            45679999999999999975 5667678999998886554322            233556677765443   21   12


Q ss_pred             HHH----HhhhcCCCCCcEEEECCCch
Q psy2960         272 LRN----ISRDASIPKPKLALNCVGGN  294 (405)
Q Consensus       272 ~~~----i~~~t~g~g~Dvvld~~g~~  294 (405)
                      ..+    +.+.  .+++|+++.+++..
T Consensus       127 i~~vi~~i~~~--~G~IDiLVhS~A~~  151 (401)
T 4ggo_A          127 KAQVIEEAKKK--GIKFDLIVYSLASP  151 (401)
T ss_dssp             HHHHHHHHHHT--TCCEEEEEECCCCS
T ss_pred             HHHHHHHHHHh--cCCCCEEEEecccc
Confidence            222    3332  56899999999853

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=96.14  E-value=0.0058  Score=56.77  Aligned_cols=84  Identities=13%  Similarity=0.073  Sum_probs=48.8

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcch-HHHHHHHH-HcCCcEE-eChhhHHHHhhhcCCCCCcE
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDI-DKLKSYLK-SLGADYV-FTEEELRNISRDASIPKPKL  286 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~-~~~~~~~~-~lg~~~v-~~~~d~~~i~~~t~g~g~Dv  286 (405)
                      .-+++.+|||.||+|.+|...++.+...|.+|+++.++.+.. ..+++.+. .-+...+ .|..|.+.+.+...+.++|+
T Consensus        10 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~   89 (335)
T 1rpn_A           10 HGSMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQE   89 (335)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             ccccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhhccccCceEEEECCCCCHHHHHHHHHHcCCCE
Confidence            346789999999999999999999988999999998765431 11122110 1112222 23333222222211226899


Q ss_pred             EEECCCc
Q psy2960         287 ALNCVGG  293 (405)
Q Consensus       287 vld~~g~  293 (405)
                      ||.+.|.
T Consensus        90 Vih~A~~   96 (335)
T 1rpn_A           90 VYNLAAQ   96 (335)
T ss_dssp             EEECCSC
T ss_pred             EEECccc
Confidence            9999874

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=96.14  E-value=0.013  Score=55.13  Aligned_cols=79  Identities=9%  Similarity=0.024  Sum_probs=50.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH--cCCcEEEEecCCcchHHH---------HHHHHHcCCcEE-eChhhHHHHhhhcC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARH--WGLKTINIVRNRDDIDKL---------KSYLKSLGADYV-FTEEELRNISRDAS  280 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~--~G~~v~~~~~~~~~~~~~---------~~~~~~lg~~~v-~~~~d~~~i~~~t~  280 (405)
                      .+.+|||.||+|.+|...++.+..  .|++|+++.++.+.....         .......+...+ .|-.+.+.+.+. .
T Consensus         9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~-~   87 (362)
T 3sxp_A            9 ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRRL-E   87 (362)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHHH-T
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHHh-h
Confidence            578999999999999999998888  899999998754310000         011111222222 243343333333 2


Q ss_pred             CCCCcEEEECCC
Q psy2960         281 IPKPKLALNCVG  292 (405)
Q Consensus       281 g~g~Dvvld~~g  292 (405)
                      ..++|+||++.|
T Consensus        88 ~~~~D~vih~A~   99 (362)
T 3sxp_A           88 KLHFDYLFHQAA   99 (362)
T ss_dssp             TSCCSEEEECCC
T ss_pred             ccCCCEEEECCc
Confidence            357999999998

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=96.14  E-value=0.028  Score=51.75  Aligned_cols=74  Identities=15%  Similarity=0.124  Sum_probs=45.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHH----cCCc-EEeChhhH---HH-HhhhcCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKS----LGAD-YVFTEEEL---RN-ISRDASIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~----lg~~-~v~~~~d~---~~-i~~~t~g~  282 (405)
                      .|+++||.|+ |++|.+++..+...|+ +++++.++.+..++..+.+.+    .+.. .+.+..+.   .+ +.      
T Consensus       147 ~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~------  219 (312)
T 3t4e_A          147 RGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALA------  219 (312)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHH------
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhcc------
Confidence            5889999999 9999999999999999 566666652221122222222    2322 23333332   22 22      


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      .+|+||+|++.
T Consensus       220 ~~DiIINaTp~  230 (312)
T 3t4e_A          220 SADILTNGTKV  230 (312)
T ss_dssp             HCSEEEECSST
T ss_pred             CceEEEECCcC
Confidence            46999999864

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=96.13  E-value=0.031  Score=51.25  Aligned_cols=93  Identities=10%  Similarity=0.032  Sum_probs=58.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHcCCc--EEeChhhHHHHhhhcCCCCCcEEEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGAD--YVFTEEELRNISRDASIPKPKLALN  289 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~lg~~--~v~~~~d~~~i~~~t~g~g~Dvvld  289 (405)
                      .|.+|+|.|+ |++|.+++..+...|+ +++++.++.++   ..+.+..++..  .+.+.++..+   .  -.++|+||+
T Consensus       140 ~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~k---a~~la~~~~~~~~~~~~~~~~~~---~--~~~aDivIn  210 (297)
T 2egg_A          140 DGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEK---AERLVREGDERRSAYFSLAEAET---R--LAEYDIIIN  210 (297)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHH---HHHHHHHSCSSSCCEECHHHHHH---T--GGGCSEEEE
T ss_pred             CCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHH---HHHHHHHhhhccCceeeHHHHHh---h--hccCCEEEE
Confidence            6889999999 8999999999999999 55555444322   23445566552  3443333322   1  135799999


Q ss_pred             CCCchhHH------HHHHhcccCCEEEEEec
Q psy2960         290 CVGGNSAT------NLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       290 ~~g~~~~~------~~~~~l~~~G~~v~~g~  314 (405)
                      |++.....      -...+++++..++.+..
T Consensus       211 ~t~~~~~~~~~~~~i~~~~l~~~~~v~D~~y  241 (297)
T 2egg_A          211 TTSVGMHPRVEVQPLSLERLRPGVIVSDIIY  241 (297)
T ss_dssp             CSCTTCSSCCSCCSSCCTTCCTTCEEEECCC
T ss_pred             CCCCCCCCCCCCCCCCHHHcCCCCEEEEcCC
Confidence            99854321      01245667667777653

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=96.12  E-value=0.006  Score=54.12  Aligned_cols=74  Identities=12%  Similarity=0.016  Sum_probs=45.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHH-cCCcEEEEecCCcchHHHHHHHHHcCCcEEeCh---hhHHHHhhhcCCCCCcEEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARH-WGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE---EELRNISRDASIPKPKLAL  288 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~-~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~---~d~~~i~~~t~g~g~Dvvl  288 (405)
                      .++++||.||+|++|.+.++.+.. .|++|+.+.++.+...   +   ++ .-...|-   ++...+.+.....++|+++
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~~---~---~~-~~~~~Dv~~~~~v~~~~~~~~~~~id~lv   75 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFSA---E---NL-KFIKADLTKQQDITNVLDIIKNVSFDGIF   75 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCCC---T---TE-EEEECCTTCHHHHHHHHHHTTTCCEEEEE
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEecccccccc---c---cc-eEEecCcCCHHHHHHHHHHHHhCCCCEEE
Confidence            467899999999999998876666 7888877765543110   0   00 0011232   2333322333345799999


Q ss_pred             ECCCc
Q psy2960         289 NCVGG  293 (405)
Q Consensus       289 d~~g~  293 (405)
                      ++.|.
T Consensus        76 ~nAg~   80 (244)
T 4e4y_A           76 LNAGI   80 (244)
T ss_dssp             ECCCC
T ss_pred             ECCcc
Confidence            99984

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=96.12  E-value=0.026  Score=51.03  Aligned_cols=90  Identities=11%  Similarity=0.032  Sum_probs=55.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHcCC--cEEeChhhHHHHhhhcCCCCCcEEEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGA--DYVFTEEELRNISRDASIPKPKLALN  289 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~lg~--~~v~~~~d~~~i~~~t~g~g~Dvvld  289 (405)
                      .|++++|.|+ |++|.+++..+...|+ +++++.++.++.   .+.+.+++.  -.+...++.   .    ...+|+||+
T Consensus       119 ~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a---~~la~~~~~~~~~~~~~~~l---~----~~~~DivIn  187 (272)
T 3pwz_A          119 RNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKA---LALRNELDHSRLRISRYEAL---E----GQSFDIVVN  187 (272)
T ss_dssp             TTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHH---HHHHHHHCCTTEEEECSGGG---T----TCCCSEEEE
T ss_pred             cCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHH---HHHHHHhccCCeeEeeHHHh---c----ccCCCEEEE
Confidence            6899999999 8999999999999997 566665544332   233444443  223333321   1    157899999


Q ss_pred             CCCchhHHH----HHHhcccCCEEEEEe
Q psy2960         290 CVGGNSATN----LLRTLVSKGVMVTYG  313 (405)
Q Consensus       290 ~~g~~~~~~----~~~~l~~~G~~v~~g  313 (405)
                      |++......    ..+.++++..++.+.
T Consensus       188 aTp~gm~~~~~~i~~~~l~~~~~V~Dlv  215 (272)
T 3pwz_A          188 ATSASLTADLPPLPADVLGEAALAYELA  215 (272)
T ss_dssp             CSSGGGGTCCCCCCGGGGTTCSEEEESS
T ss_pred             CCCCCCCCCCCCCCHHHhCcCCEEEEee
Confidence            987532111    124566666666554

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=96.12  E-value=0.032  Score=46.71  Aligned_cols=101  Identities=20%  Similarity=0.280  Sum_probs=61.3

Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC-cEE-eChhhHHH-HhhhcCCCC
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA-DYV-FTEEELRN-ISRDASIPK  283 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~-~~v-~~~~d~~~-i~~~t~g~g  283 (405)
                      ....+.++++||-.|+ |. |..+..+++.. .+++++-.+.+..+...+.+...|. +.+ +...|... +..   ...
T Consensus        27 ~~~~~~~~~~vldiG~-G~-G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~  100 (192)
T 1l3i_A           27 CLAEPGKNDVAVDVGC-GT-GGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK---IPD  100 (192)
T ss_dssp             HHHCCCTTCEEEEESC-TT-SHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT---SCC
T ss_pred             HhcCCCCCCEEEEECC-CC-CHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhccc---CCC
Confidence            4457889999999998 43 88888888776 6777665443333333333344554 211 22223322 221   147


Q ss_pred             CcEEEECCCc----hhHHHHHHhcccCCEEEEEe
Q psy2960         284 PKLALNCVGG----NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       284 ~Dvvld~~g~----~~~~~~~~~l~~~G~~v~~g  313 (405)
                      +|+|+....-    ..+..+.+.|+++|+++...
T Consensus       101 ~D~v~~~~~~~~~~~~l~~~~~~l~~gG~l~~~~  134 (192)
T 1l3i_A          101 IDIAVVGGSGGELQEILRIIKDKLKPGGRIIVTA  134 (192)
T ss_dssp             EEEEEESCCTTCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCEEEECCchHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            8999976542    23345678899999988754

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=96.10  E-value=0.014  Score=52.58  Aligned_cols=96  Identities=14%  Similarity=0.074  Sum_probs=67.5

Q ss_pred             ccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh
Q psy2960         192 SGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE  271 (405)
Q Consensus       192 a~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d  271 (405)
                      ..+||....+...|....---.|.+|+|.|.++-+|..+++++...||+|.++-+..                     .+
T Consensus       139 ~~~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T---------------------~~  197 (286)
T 4a5o_A          139 LLRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT---------------------RD  197 (286)
T ss_dssp             SSCCHHHHHHHHHHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC---------------------SC
T ss_pred             CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC---------------------cC
Confidence            456666666666666543334899999999977799999999999999887664211                     12


Q ss_pred             HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEecc
Q psy2960         272 LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       272 ~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~  315 (405)
                      ..+ ++      ..|+|+.++|.+.+. --+.++++..++.+|..
T Consensus       198 L~~~~~------~ADIVI~Avg~p~~I-~~~~vk~GavVIDvgi~  235 (286)
T 4a5o_A          198 LADHVS------RADLVVVAAGKPGLV-KGEWIKEGAIVIDVGIN  235 (286)
T ss_dssp             HHHHHH------TCSEEEECCCCTTCB-CGGGSCTTCEEEECCSC
T ss_pred             HHHHhc------cCCEEEECCCCCCCC-CHHHcCCCeEEEEeccc
Confidence            222 22      459999999976442 12567899999998854

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=96.10  E-value=0.015  Score=53.28  Aligned_cols=74  Identities=12%  Similarity=0.078  Sum_probs=48.4

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEEEC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALNC  290 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~--G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld~  290 (405)
                      +.+|||.||+|.+|...++.+...  |.+|+++.++.+..+    ...  +...+ .|..|.+.+.+.....++|+||.+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~----~~~--~~~~~~~D~~d~~~~~~~~~~~~~d~vih~   75 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTD----VVN--SGPFEVVNALDFNQIEHLVEVHKITDIYLM   75 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCH----HHH--SSCEEECCTTCHHHHHHHHHHTTCCEEEEC
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCcccc----ccC--CCceEEecCCCHHHHHHHHhhcCCCEEEEC
Confidence            367999999999999999888877  899999987655421    111  23333 243332222222212378999999


Q ss_pred             CCc
Q psy2960         291 VGG  293 (405)
Q Consensus       291 ~g~  293 (405)
                      .+.
T Consensus        76 a~~   78 (312)
T 2yy7_A           76 AAL   78 (312)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            874

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=96.10  E-value=0.014  Score=49.96  Aligned_cols=147  Identities=14%  Similarity=0.173  Sum_probs=81.5

Q ss_pred             CCCCCEEEecCCCCCcccceEe-ecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHH
Q psy2960         152 LAVGDHVIPDTQHLGTWRNYGK-FNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNV  230 (405)
Q Consensus       152 ~~~GdrV~~~~~~~G~~a~~~~-v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~a  230 (405)
                      +++|+.+...    ..|.+|.. .+....+.+++++.+..+.. + ........+..  .++++++||-.|+ | .|..+
T Consensus         6 ~~~~~~~~~~----p~w~~~~~~~~~~~~~~~~~~~~f~~~~~-~-~~~~~~~~l~~--~~~~~~~vLDiG~-G-~G~~~   75 (205)
T 3grz_A            6 INLSRHLAIV----PEWEDYQPVFKDQEIIRLDPGLAFGTGNH-Q-TTQLAMLGIER--AMVKPLTVADVGT-G-SGILA   75 (205)
T ss_dssp             EEEETTEEEE----ETTCCCCCSSTTCEEEEESCC-----CCH-H-HHHHHHHHHHH--HCSSCCEEEEETC-T-TSHHH
T ss_pred             EEECCcEEEe----ccccccccCCCCceeEEecCCcccCCCCC-c-cHHHHHHHHHH--hccCCCEEEEECC-C-CCHHH
Confidence            4456666655    25778877 77788889998887766421 1 11111222222  2678999999998 3 37778


Q ss_pred             HHHHHHcCC-cEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEEECCCchhHHH----HHHhcc
Q psy2960         231 IQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALNCVGGNSATN----LLRTLV  304 (405)
Q Consensus       231 iqla~~~G~-~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld~~g~~~~~~----~~~~l~  304 (405)
                      ..+++ .|. +++++--+.+..+...+.+...+.+.+ +...|...   .. ...+|+|+....-.....    +.+.|+
T Consensus        76 ~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~---~~-~~~fD~i~~~~~~~~~~~~l~~~~~~L~  150 (205)
T 3grz_A           76 IAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLA---DV-DGKFDLIVANILAEILLDLIPQLDSHLN  150 (205)
T ss_dssp             HHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTT---TC-CSCEEEEEEESCHHHHHHHGGGSGGGEE
T ss_pred             HHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccc---cC-CCCceEEEECCcHHHHHHHHHHHHHhcC
Confidence            88776 465 666664443333333344444554321 11122211   11 357999997765554433    356789


Q ss_pred             cCCEEEEEe
Q psy2960         305 SKGVMVTYG  313 (405)
Q Consensus       305 ~~G~~v~~g  313 (405)
                      ++|+++...
T Consensus       151 ~gG~l~~~~  159 (205)
T 3grz_A          151 EDGQVIFSG  159 (205)
T ss_dssp             EEEEEEEEE
T ss_pred             CCCEEEEEe
Confidence            999998754

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=96.10  E-value=0.019  Score=52.90  Aligned_cols=104  Identities=16%  Similarity=0.154  Sum_probs=65.8

Q ss_pred             hhcC-CCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc--EEeChhhHHHHhhhcCCCC
Q psy2960         207 DYNS-LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YVFTEEELRNISRDASIPK  283 (405)
Q Consensus       207 ~~~~-~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~--~v~~~~d~~~i~~~t~g~g  283 (405)
                      .... ++++++||-.|+  |.|..+..+++..|++++++--+.+..+...+.+...|..  .-+-..|...+.  .....
T Consensus       110 ~~l~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~  185 (312)
T 3vc1_A          110 DHLGQAGPDDTLVDAGC--GRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP--FDKGA  185 (312)
T ss_dssp             TTSCCCCTTCEEEEESC--TTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--CCTTC
T ss_pred             HHhccCCCCCEEEEecC--CCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCC--CCCCC
Confidence            3344 889999999998  4588999999988999888865544433334444455532  112112221110  12357


Q ss_pred             CcEEEECCC------chhHHHHHHhcccCCEEEEEec
Q psy2960         284 PKLALNCVG------GNSATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       284 ~Dvvld~~g------~~~~~~~~~~l~~~G~~v~~g~  314 (405)
                      +|+|+..-.      ...+..+.+.|+|+|+++....
T Consensus       186 fD~V~~~~~l~~~~~~~~l~~~~~~LkpgG~l~~~~~  222 (312)
T 3vc1_A          186 VTASWNNESTMYVDLHDLFSEHSRFLKVGGRYVTITG  222 (312)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EeEEEECCchhhCCHHHHHHHHHHHcCCCcEEEEEEc
Confidence            999986432      2234456799999999998763

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=96.09  E-value=0.019  Score=56.04  Aligned_cols=80  Identities=16%  Similarity=0.238  Sum_probs=53.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eCh---hhHHH-Hhhh--cCCCCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTE---EELRN-ISRD--ASIPKPK  285 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~---~d~~~-i~~~--t~g~g~D  285 (405)
                      +|+++||.|++|++|.+.++.+...|++|+.+.++. ..+...+...+++...+ .|-   ++... +.+.  ..++.+|
T Consensus       212 ~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~-~~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~~id  290 (454)
T 3u0b_A          212 DGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDG-AAEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHGGKVD  290 (454)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGG-GHHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHHSTTCCS
T ss_pred             CCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCc-cHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHHcCCCce
Confidence            688999999999999999988888899988876543 22334455556666433 232   22322 2221  1133499


Q ss_pred             EEEECCCc
Q psy2960         286 LALNCVGG  293 (405)
Q Consensus       286 vvld~~g~  293 (405)
                      ++|++.|.
T Consensus       291 ~lV~nAGv  298 (454)
T 3u0b_A          291 ILVNNAGI  298 (454)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99999983

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=96.07  E-value=0.022  Score=50.59  Aligned_cols=102  Identities=15%  Similarity=0.142  Sum_probs=62.5

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHcCCc-EE-eChhhHHH-HhhhcCCCCC
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGAD-YV-FTEEELRN-ISRDASIPKP  284 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~--G~~v~~~~~~~~~~~~~~~~~~~lg~~-~v-~~~~d~~~-i~~~t~g~g~  284 (405)
                      .+.++.+||-.|+  |.|..++.+|+.+  +++++++-.+++..+...+.+...|.. .+ +-..|..+ +........+
T Consensus        60 ~~~~~~~VLdiG~--G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~f  137 (248)
T 3tfw_A           60 RLTQAKRILEIGT--LGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAF  137 (248)
T ss_dssp             HHHTCSEEEEECC--TTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCC
T ss_pred             hhcCCCEEEEecC--CchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCe
Confidence            4567899999998  4588999999987  456666654443333334444555653 12 22223333 3333233579


Q ss_pred             cEEEECCCch----hHHHHHHhcccCCEEEEEe
Q psy2960         285 KLALNCVGGN----SATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       285 Dvvld~~g~~----~~~~~~~~l~~~G~~v~~g  313 (405)
                      |+|+-.....    .+..+.+.|+|||.++.-.
T Consensus       138 D~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~  170 (248)
T 3tfw_A          138 DLIFIDADKPNNPHYLRWALRYSRPGTLIIGDN  170 (248)
T ss_dssp             SEEEECSCGGGHHHHHHHHHHTCCTTCEEEEEC
T ss_pred             EEEEECCchHHHHHHHHHHHHhcCCCeEEEEeC
Confidence            9998443332    3345678999999887743

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=96.06  E-value=0.0052  Score=55.31  Aligned_cols=71  Identities=8%  Similarity=-0.080  Sum_probs=48.9

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      +++|||.||+|++|.+.++.+...|++|+++.++.++..       ..+...+ .|-.|.+.+.+...  ++|+||++.|
T Consensus         3 ~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~-------~~~~~~~~~Dl~d~~~~~~~~~--~~D~vi~~Ag   73 (267)
T 3rft_A            3 MKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA-------GPNEECVQCDLADANAVNAMVA--GCDGIVHLGG   73 (267)
T ss_dssp             EEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC-------CTTEEEEECCTTCHHHHHHHHT--TCSEEEECCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc-------CCCCEEEEcCCCCHHHHHHHHc--CCCEEEECCC
Confidence            468999999999999999999889999999987754421       1122222 24334333444332  6899999987


Q ss_pred             c
Q psy2960         293 G  293 (405)
Q Consensus       293 ~  293 (405)
                      .
T Consensus        74 ~   74 (267)
T 3rft_A           74 I   74 (267)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=96.03  E-value=0.01  Score=53.49  Aligned_cols=96  Identities=15%  Similarity=0.129  Sum_probs=65.9

Q ss_pred             cCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhH
Q psy2960         193 GITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEEL  272 (405)
Q Consensus       193 ~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~  272 (405)
                      .+||....+...+....---.|.+++|.|.++-+|..+++++...||+|.++-+..                     ++.
T Consensus       139 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t---------------------~~L  197 (285)
T 3p2o_A          139 FLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT---------------------KDL  197 (285)
T ss_dssp             CCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------------------SCH
T ss_pred             CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc---------------------hhH
Confidence            45655555666665543334899999999977799999999999999876653221                     122


Q ss_pred             HHHhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEecc
Q psy2960         273 RNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       273 ~~i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~  315 (405)
                      .+   .+  +..|+||.++|.+.+. --+.++++-.++.+|..
T Consensus       198 ~~---~~--~~ADIVI~Avg~p~~I-~~~~vk~GavVIDVgi~  234 (285)
T 3p2o_A          198 SL---YT--RQADLIIVAAGCVNLL-RSDMVKEGVIVVDVGIN  234 (285)
T ss_dssp             HH---HH--TTCSEEEECSSCTTCB-CGGGSCTTEEEEECCCE
T ss_pred             HH---Hh--hcCCEEEECCCCCCcC-CHHHcCCCeEEEEeccC
Confidence            22   11  2469999999976442 12567888888888854

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=96.02  E-value=0.02  Score=51.33  Aligned_cols=38  Identities=18%  Similarity=0.337  Sum_probs=33.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD  250 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~  250 (405)
                      .+++|||.||+|++|.+.+..+...|++|+++.++.+.
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~   64 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKP   64 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhh
Confidence            57899999999999999999999999999999876543

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=96.02  E-value=0.054  Score=48.25  Aligned_cols=126  Identities=18%  Similarity=0.211  Sum_probs=70.1

Q ss_pred             cceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHH
Q psy2960         177 DVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKS  256 (405)
Q Consensus       177 ~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~  256 (405)
                      ...+.+++++.|....- + ........+...  ++++++||-.|+ |. |..++.+++ .|++++++--++...+...+
T Consensus        88 ~~~~~l~p~~~fgtg~~-~-tt~~~~~~l~~~--~~~~~~VLDiGc-G~-G~l~~~la~-~g~~v~gvDi~~~~v~~a~~  160 (254)
T 2nxc_A           88 EIPLVIEPGMAFGTGHH-E-TTRLALKALARH--LRPGDKVLDLGT-GS-GVLAIAAEK-LGGKALGVDIDPMVLPQAEA  160 (254)
T ss_dssp             SEEEECCCC-----CCS-H-HHHHHHHHHHHH--CCTTCEEEEETC-TT-SHHHHHHHH-TTCEEEEEESCGGGHHHHHH
T ss_pred             ceEEEECCCccccCCCC-H-HHHHHHHHHHHh--cCCCCEEEEecC-CC-cHHHHHHHH-hCCeEEEEECCHHHHHHHHH
Confidence            44566777665543321 1 111122334332  678999999998 33 778887776 57777777655554444445


Q ss_pred             HHHHcCCc-EEeChhhHHHHhhhcCCCCCcEEEECCCchh----HHHHHHhcccCCEEEEEe
Q psy2960         257 YLKSLGAD-YVFTEEELRNISRDASIPKPKLALNCVGGNS----ATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       257 ~~~~lg~~-~v~~~~d~~~i~~~t~g~g~Dvvld~~g~~~----~~~~~~~l~~~G~~v~~g  313 (405)
                      .+...+.+ .+. ..|....   .....+|+|+...-...    +....++|+|+|+++..+
T Consensus       161 n~~~~~~~v~~~-~~d~~~~---~~~~~fD~Vv~n~~~~~~~~~l~~~~~~LkpgG~lils~  218 (254)
T 2nxc_A          161 NAKRNGVRPRFL-EGSLEAA---LPFGPFDLLVANLYAELHAALAPRYREALVPGGRALLTG  218 (254)
T ss_dssp             HHHHTTCCCEEE-ESCHHHH---GGGCCEEEEEEECCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHcCCcEEEE-ECChhhc---CcCCCCCEEEECCcHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            55555653 221 1222221   11346999997553322    334568899999999866

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=96.01  E-value=0.034  Score=47.04  Aligned_cols=95  Identities=14%  Similarity=0.049  Sum_probs=58.2

Q ss_pred             hcCCCCCCEEEEeCCCcHHHHHHHHHHHHcC----------CcEEEEecCCcchHHHHHHHHHcCCcEEe-C--hhh--H
Q psy2960         208 YNSLSPGDVVIQNGANSACGQNVIQIARHWG----------LKTINIVRNRDDIDKLKSYLKSLGADYVF-T--EEE--L  272 (405)
Q Consensus       208 ~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G----------~~v~~~~~~~~~~~~~~~~~~~lg~~~v~-~--~~d--~  272 (405)
                      ...+++|++||-.|+ |. |..+..+++..|          .+++++--++..         .+..-..+ .  ..+  .
T Consensus        17 ~~~~~~~~~vLDlGc-G~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------~~~~~~~~~~~d~~~~~~   85 (196)
T 2nyu_A           17 HQILRPGLRVLDCGA-AP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------PLEGATFLCPADVTDPRT   85 (196)
T ss_dssp             HCCCCTTCEEEEETC-CS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------CCTTCEEECSCCTTSHHH
T ss_pred             cCCCCCCCEEEEeCC-CC-CHHHHHHHHHhccccccccCCCceEEEEechhcc---------cCCCCeEEEeccCCCHHH
Confidence            345789999999998 55 999999999987          556665433211         01111222 1  111  2


Q ss_pred             HH-HhhhcCCCCCcEEEE-----CCCc-------------hhHHHHHHhcccCCEEEEEe
Q psy2960         273 RN-ISRDASIPKPKLALN-----CVGG-------------NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       273 ~~-i~~~t~g~g~Dvvld-----~~g~-------------~~~~~~~~~l~~~G~~v~~g  313 (405)
                      .. +.+.+.+..+|+|+.     +++.             ..+..+.+.|+|+|+++...
T Consensus        86 ~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~  145 (196)
T 2nyu_A           86 SQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKT  145 (196)
T ss_dssp             HHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             HHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEe
Confidence            22 333444457999994     3332             22345678999999998764

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=96.00  E-value=0.028  Score=49.91  Aligned_cols=103  Identities=14%  Similarity=0.120  Sum_probs=64.1

Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHc-CCcEE-eChhhHHHHhhhcCCC
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSL-GADYV-FTEEELRNISRDASIP  282 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~--G~~v~~~~~~~~~~~~~~~~~~~l-g~~~v-~~~~d~~~i~~~t~g~  282 (405)
                      ....+++|++||-.|+ | .|..+..+++..  +.+++++-.+++..+...+.+... |.+.+ +...|+.+.  .....
T Consensus        90 ~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~--~~~~~  165 (258)
T 2pwy_A           90 TLLDLAPGMRVLEAGT-G-SGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEA--ELEEA  165 (258)
T ss_dssp             HHTTCCTTCEEEEECC-T-TSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGC--CCCTT
T ss_pred             HHcCCCCCCEEEEECC-C-cCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhc--CCCCC
Confidence            4467899999999998 4 499999999986  457776644433322222333333 53322 112222211  01234


Q ss_pred             CCcEEEECCCc--hhHHHHHHhcccCCEEEEEe
Q psy2960         283 KPKLALNCVGG--NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       283 g~Dvvld~~g~--~~~~~~~~~l~~~G~~v~~g  313 (405)
                      .+|+|+.....  ..+..+.+.|+++|+++.+.
T Consensus       166 ~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~  198 (258)
T 2pwy_A          166 AYDGVALDLMEPWKVLEKAALALKPDRFLVAYL  198 (258)
T ss_dssp             CEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             CcCEEEECCcCHHHHHHHHHHhCCCCCEEEEEe
Confidence            69999976654  34566789999999998875

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=95.99  E-value=0.003  Score=57.05  Aligned_cols=37  Identities=24%  Similarity=0.308  Sum_probs=32.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD  249 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~  249 (405)
                      .|+++||.||+|++|.+.++.+...|++|+.+.++.+
T Consensus        27 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~   63 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVA   63 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            5899999999999999999999999999988876543

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=95.99  E-value=0.016  Score=54.88  Aligned_cols=77  Identities=6%  Similarity=-0.031  Sum_probs=49.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcC-CcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEEEC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALNC  290 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G-~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld~  290 (405)
                      .+.+|||.||+|.+|...++.+...| .+|+++.++.+.....+.  ..-+...+ .|..|.+.+.+..  .++|+||.+
T Consensus        31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~--~~~~v~~~~~Dl~d~~~l~~~~--~~~d~Vih~  106 (377)
T 2q1s_A           31 ANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVP--DHPAVRFSETSITDDALLASLQ--DEYDYVFHL  106 (377)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSC--CCTTEEEECSCTTCHHHHHHCC--SCCSEEEEC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhcc--CCCceEEEECCCCCHHHHHHHh--hCCCEEEEC
Confidence            46789999999999999999999999 999999876443211110  01111112 1333333344432  379999999


Q ss_pred             CCc
Q psy2960         291 VGG  293 (405)
Q Consensus       291 ~g~  293 (405)
                      .+.
T Consensus       107 A~~  109 (377)
T 2q1s_A          107 ATY  109 (377)
T ss_dssp             CCC
T ss_pred             CCc
Confidence            874

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=95.96  E-value=0.049  Score=51.09  Aligned_cols=98  Identities=11%  Similarity=0.047  Sum_probs=61.9

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc-CCcEE-eC-hhhHHHHhhhcCCCCCcEEEEC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADYV-FT-EEELRNISRDASIPKPKLALNC  290 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l-g~~~v-~~-~~d~~~i~~~t~g~g~Dvvld~  290 (405)
                      +.+|||.||+|.+|...++.+...|.+|++++++.+...  .+.+... +...+ .| ..|.+.+.+..  .++|+||.+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~--~~~l~~~~~v~~v~~D~l~d~~~l~~~~--~~~d~Vi~~   80 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLI--AEELQAIPNVTLFQGPLLNNVPLMDTLF--EGAHLAFIN   80 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHH--HHHHHTSTTEEEEESCCTTCHHHHHHHH--TTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhh--HHHHhhcCCcEEEECCccCCHHHHHHHH--hcCCEEEEc
Confidence            568999999999999999988889999999988765421  1223332 33322 24 44433343332  358999977


Q ss_pred             CCch------hHHHHHHhccc-C--CEEEEEecc
Q psy2960         291 VGGN------SATNLLRTLVS-K--GVMVTYGGM  315 (405)
Q Consensus       291 ~g~~------~~~~~~~~l~~-~--G~~v~~g~~  315 (405)
                      .+..      .....++.++. +  ++||.++..
T Consensus        81 a~~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~  114 (352)
T 1xgk_A           81 TTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMP  114 (352)
T ss_dssp             CCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEECC
T ss_pred             CCCCCcHHHHHHHHHHHHHHHcCCccEEEEeCCc
Confidence            7542      11233444433 3  599998854

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=95.95  E-value=0.0082  Score=54.56  Aligned_cols=36  Identities=14%  Similarity=0.157  Sum_probs=30.6

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecC
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN  247 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~  247 (405)
                      .+..+|||.||+|.+|...++.+...|.+|+++.++
T Consensus        10 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~   45 (292)
T 1vl0_A           10 HHHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ   45 (292)
T ss_dssp             --CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT
T ss_pred             cccceEEEECCCChHHHHHHHHHHhCCCeEEeccCc
Confidence            456799999999999999999998899999988753

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=95.93  E-value=0.014  Score=49.86  Aligned_cols=59  Identities=15%  Similarity=0.179  Sum_probs=43.0

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh---HHH-HhhhcCCCCCcEEEECC
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE---LRN-ISRDASIPKPKLALNCV  291 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d---~~~-i~~~t~g~g~Dvvld~~  291 (405)
                      +|||.||+|++|.+.++.+. .|++|+++.++.+              ....|-.+   ..+ +.+.   +++|++|++.
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~--------------~~~~D~~~~~~~~~~~~~~---~~~d~vi~~a   66 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-KKAEVITAGRHSG--------------DVTVDITNIDSIKKMYEQV---GKVDAIVSAT   66 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS--------------SEECCTTCHHHHHHHHHHH---CCEEEEEECC
T ss_pred             EEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc--------------ceeeecCCHHHHHHHHHHh---CCCCEEEECC
Confidence            79999999999999999888 8999998876542              12233332   333 3332   4689999998


Q ss_pred             C
Q psy2960         292 G  292 (405)
Q Consensus       292 g  292 (405)
                      |
T Consensus        67 g   67 (202)
T 3d7l_A           67 G   67 (202)
T ss_dssp             C
T ss_pred             C
Confidence            7

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=95.91  E-value=0.036  Score=50.18  Aligned_cols=103  Identities=11%  Similarity=0.161  Sum_probs=64.6

Q ss_pred             HHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc-EE-eChhhHHHHhhhcCC
Q psy2960         204 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YV-FTEEELRNISRDASI  281 (405)
Q Consensus       204 al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~-~v-~~~~d~~~i~~~t~g  281 (405)
                      .+....++++|++||-.|+  |.|..+..+++..|++++++.-+.+..+...+.+...|.. .+ +...|.   .+..  
T Consensus        55 ~~~~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~~--  127 (287)
T 1kpg_A           55 LALGKLGLQPGMTLLDVGC--GWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGW---EQFD--  127 (287)
T ss_dssp             HHHTTTTCCTTCEEEEETC--TTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCG---GGCC--
T ss_pred             HHHHHcCCCCcCEEEEECC--cccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECCh---hhCC--
Confidence            3345567889999999998  4588899999888998888865544333333334444431 11 111222   2221  


Q ss_pred             CCCcEEEEC-----CCc----hhHHHHHHhcccCCEEEEEe
Q psy2960         282 PKPKLALNC-----VGG----NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       282 ~g~Dvvld~-----~g~----~~~~~~~~~l~~~G~~v~~g  313 (405)
                      ..+|+|+..     ++.    ..+....+.|+|+|+++...
T Consensus       128 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  168 (287)
T 1kpg_A          128 EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHT  168 (287)
T ss_dssp             CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            579999865     221    22345678999999998765

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=95.89  E-value=0.043  Score=47.75  Aligned_cols=103  Identities=15%  Similarity=0.126  Sum_probs=62.8

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcC------CcEEEEecCCcchHHHHHHHHHcC-----CcEE-eChhhHHH-Hh
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHWG------LKTINIVRNRDDIDKLKSYLKSLG-----ADYV-FTEEELRN-IS  276 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~G------~~v~~~~~~~~~~~~~~~~~~~lg-----~~~v-~~~~d~~~-i~  276 (405)
                      .++++++||-.|+ | .|..+..+++..+      .+++++-.+.+..+...+.+...+     .+.+ +...|... ..
T Consensus        77 ~~~~~~~VLdiG~-G-~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~  154 (227)
T 2pbf_A           77 VLKPGSRAIDVGS-G-SGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNE  154 (227)
T ss_dssp             TSCTTCEEEEESC-T-TSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCH
T ss_pred             hCCCCCEEEEECC-C-CCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhccc
Confidence            6889999999998 3 4899999999886      577777544333333333334444     2211 11122211 10


Q ss_pred             -hhcCCCCCcEEEECCCchhH-HHHHHhcccCCEEEEEec
Q psy2960         277 -RDASIPKPKLALNCVGGNSA-TNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       277 -~~t~g~g~Dvvld~~g~~~~-~~~~~~l~~~G~~v~~g~  314 (405)
                       .......+|+|+.......+ ....+.|+++|+++..-.
T Consensus       155 ~~~~~~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          155 EEKKELGLFDAIHVGASASELPEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             HHHHHHCCEEEEEECSBBSSCCHHHHHHEEEEEEEEEEEE
T ss_pred             ccCccCCCcCEEEECCchHHHHHHHHHhcCCCcEEEEEEc
Confidence             00113468999987665444 567799999999987753

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=95.89  E-value=0.0047  Score=57.48  Aligned_cols=100  Identities=13%  Similarity=0.135  Sum_probs=59.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc-CCcEE-eChhhHHHHhhhcCCCCCcEEEEC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADYV-FTEEELRNISRDASIPKPKLALNC  290 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l-g~~~v-~~~~d~~~i~~~t~g~g~Dvvld~  290 (405)
                      .+.+|||.||+|.+|...++.+...|.+|+++.++.+...   +.+..+ +...+ .|..|.+.+.+...+..+|+||++
T Consensus        20 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~---~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~   96 (333)
T 2q1w_A           20 HMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRR---EHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHT   96 (333)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCG---GGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccch---hhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEEC
Confidence            4679999999999999999999889999999987643211   111111 22212 233332222222212358999999


Q ss_pred             CCchh---------------HHHHHHhccc--CCEEEEEecc
Q psy2960         291 VGGNS---------------ATNLLRTLVS--KGVMVTYGGM  315 (405)
Q Consensus       291 ~g~~~---------------~~~~~~~l~~--~G~~v~~g~~  315 (405)
                      .|...               ....++.+.+  .++|+.++..
T Consensus        97 A~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~iV~~SS~  138 (333)
T 2q1w_A           97 AASYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQTA  138 (333)
T ss_dssp             CCCCSCTTCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEG
T ss_pred             ceecCCCccCChHHHHHHHHHHHHHHHHHHhCCCEEEEECcH
Confidence            87421               1223344333  3699988853

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=95.88  E-value=0.0095  Score=55.58  Aligned_cols=79  Identities=13%  Similarity=0.021  Sum_probs=45.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcC--CcEEEEecCCcchHHHHHHHHHc----CCcEE-eChhhHHHHhhhcCCCCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSL----GADYV-FTEEELRNISRDASIPKPK  285 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G--~~v~~~~~~~~~~~~~~~~~~~l----g~~~v-~~~~d~~~i~~~t~g~g~D  285 (405)
                      .+.+|||.||+|.+|...++.+...|  .+|++..+.....  ..+.+..+    +...+ .|..|.+.+.+...+.++|
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d  100 (346)
T 4egb_A           23 NAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSG--NLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQ  100 (346)
T ss_dssp             -CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTC--CGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCC
T ss_pred             CCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEecccccc--chhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCC
Confidence            46789999999999999999999989  5666665432110  01111122    22222 2333332222222223689


Q ss_pred             EEEECCCc
Q psy2960         286 LALNCVGG  293 (405)
Q Consensus       286 vvld~~g~  293 (405)
                      +||++.+.
T Consensus       101 ~Vih~A~~  108 (346)
T 4egb_A          101 VIVNFAAE  108 (346)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99999873

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=95.86  E-value=0.032  Score=51.11  Aligned_cols=36  Identities=11%  Similarity=0.071  Sum_probs=32.8

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD  249 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~  249 (405)
                      +.+|||.||+|.+|...++.+...|.+|+++.++.+
T Consensus         7 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            7 KHRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            679999999999999999999999999999987654

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=95.86  E-value=0.024  Score=52.79  Aligned_cols=87  Identities=17%  Similarity=0.111  Sum_probs=63.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      .|.+|.|.|. |.+|...++.++.+|++|++..++.+.     +.+.+.|++. .   +++++.     ...|+|+.++.
T Consensus       164 ~g~tvgIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~-----~~~~~~g~~~-~---~l~ell-----~~aDvV~l~~P  228 (335)
T 2g76_A          164 NGKTLGILGL-GRIGREVATRMQSFGMKTIGYDPIISP-----EVSASFGVQQ-L---PLEEIW-----PLCDFITVHTP  228 (335)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSSCH-----HHHHHTTCEE-C---CHHHHG-----GGCSEEEECCC
T ss_pred             CcCEEEEEeE-CHHHHHHHHHHHHCCCEEEEECCCcch-----hhhhhcCcee-C---CHHHHH-----hcCCEEEEecC
Confidence            6889999999 999999999999999999888655432     2455777753 1   333321     24699999887


Q ss_pred             chh-----H-HHHHHhcccCCEEEEEec
Q psy2960         293 GNS-----A-TNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       293 ~~~-----~-~~~~~~l~~~G~~v~~g~  314 (405)
                      ...     + ...+..|++++.++.++.
T Consensus       229 ~t~~t~~li~~~~l~~mk~gailIN~ar  256 (335)
T 2g76_A          229 LLPSTTGLLNDNTFAQCKKGVRVVNCAR  256 (335)
T ss_dssp             CCTTTTTSBCHHHHTTSCTTEEEEECSC
T ss_pred             CCHHHHHhhCHHHHhhCCCCcEEEECCC
Confidence            532     1 346788999999998874

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=95.84  E-value=0.021  Score=53.47  Aligned_cols=96  Identities=17%  Similarity=0.196  Sum_probs=58.9

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhH-H------------H-Hhh
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEEL-R------------N-ISR  277 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~-~------------~-i~~  277 (405)
                      -.|++|.|.|. |.||+.+++.++.+|++|+ +++...   .+.+...++|++.+ +.+++ .            . +.+
T Consensus       173 L~GktV~I~G~-GnVG~~~A~~l~~~GakVv-vsD~~~---~~~~~a~~~ga~~v-~~~ell~~~~DIliP~A~~~~I~~  246 (355)
T 1c1d_A          173 LDGLTVLVQGL-GAVGGSLASLAAEAGAQLL-VADTDT---ERVAHAVALGHTAV-ALEDVLSTPCDVFAPCAMGGVITT  246 (355)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTCEEE-EECSCH---HHHHHHHHTTCEEC-CGGGGGGCCCSEEEECSCSCCBCH
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCCEEE-EEeCCc---cHHHHHHhcCCEEe-ChHHhhcCccceecHhHHHhhcCH
Confidence            47999999998 9999999999999999998 554332   22455566776544 22210 0            0 000


Q ss_pred             -hcCCCCCcEEEECCCchhHH-HHHHhcccCCEEEEEe
Q psy2960         278 -DASIPKPKLALNCVGGNSAT-NLLRTLVSKGVMVTYG  313 (405)
Q Consensus       278 -~t~g~g~Dvvld~~g~~~~~-~~~~~l~~~G~~v~~g  313 (405)
                       ....-+.++|+++..++... ++.+.|..+|.++.-+
T Consensus       247 ~~~~~lk~~iVie~AN~p~t~~eA~~~L~~~gIlv~Pd  284 (355)
T 1c1d_A          247 EVARTLDCSVVAGAANNVIADEAASDILHARGILYAPD  284 (355)
T ss_dssp             HHHHHCCCSEECCSCTTCBCSHHHHHHHHHTTCEECCH
T ss_pred             HHHhhCCCCEEEECCCCCCCCHHHHHHHHhCCEEEECC
Confidence             00011356777776665553 5566677777655443

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=95.84  E-value=0.022  Score=50.58  Aligned_cols=104  Identities=18%  Similarity=0.207  Sum_probs=65.1

Q ss_pred             HHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc--EEeChhhHHHHhhhcCCC
Q psy2960         205 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YVFTEEELRNISRDASIP  282 (405)
Q Consensus       205 l~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~--~v~~~~d~~~i~~~t~g~  282 (405)
                      +.....++++++||-.|+  |.|..+..+++..|++++++--+.+..+...+.+...|..  .-+-..|..+   .....
T Consensus        28 l~~~~~~~~~~~VLDiGc--G~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~  102 (256)
T 1nkv_A           28 LGRVLRMKPGTRILDLGS--GSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAG---YVANE  102 (256)
T ss_dssp             HHHHTCCCTTCEEEEETC--TTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTT---CCCSS
T ss_pred             HHHhcCCCCCCEEEEECC--CCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHh---CCcCC
Confidence            334467899999999998  3488999999998999888865544433333444445532  1121122221   11135


Q ss_pred             CCcEEEECCCc-------hhHHHHHHhcccCCEEEEEe
Q psy2960         283 KPKLALNCVGG-------NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       283 g~Dvvld~~g~-------~~~~~~~~~l~~~G~~v~~g  313 (405)
                      .+|+|+..-.-       ..+....++|+|+|+++...
T Consensus       103 ~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A          103 KCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE  140 (256)
T ss_dssp             CEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             CCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEec
Confidence            68999863221       22345668899999998764

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=95.83  E-value=0.091  Score=49.42  Aligned_cols=89  Identities=13%  Similarity=0.091  Sum_probs=59.3

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCCc
Q psy2960         215 DVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGG  293 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~  293 (405)
                      -+|.|.|+ |.+|...+..++.. +++++++++..   +++.+.+.+.|.. +  +.+++++.+   ...+|+|+.|+..
T Consensus         6 ~~vgiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~---~~~~~~a~~~g~~-~--~~~~~~ll~---~~~~D~V~i~tp~   75 (359)
T 3e18_A            6 YQLVIVGY-GGMGSYHVTLASAADNLEVHGVFDIL---AEKREAAAQKGLK-I--YESYEAVLA---DEKVDAVLIATPN   75 (359)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTSTTEEEEEEECSS---HHHHHHHHTTTCC-B--CSCHHHHHH---CTTCCEEEECSCG
T ss_pred             CcEEEECc-CHHHHHHHHHHHhCCCcEEEEEEcCC---HHHHHHHHhcCCc-e--eCCHHHHhc---CCCCCEEEEcCCc
Confidence            36999999 99999888877766 78888888553   3344556677764 2  234444222   3468999999987


Q ss_pred             hhH-HHHHHhcccCCEEEEEec
Q psy2960         294 NSA-TNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       294 ~~~-~~~~~~l~~~G~~v~~g~  314 (405)
                      ..- ..+..++.. |+-|.+.+
T Consensus        76 ~~h~~~~~~al~a-GkhVl~EK   96 (359)
T 3e18_A           76 DSHKELAISALEA-GKHVVCEK   96 (359)
T ss_dssp             GGHHHHHHHHHHT-TCEEEEES
T ss_pred             HHHHHHHHHHHHC-CCCEEeeC
Confidence            554 445666665 45566654

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=95.81  E-value=0.19  Score=46.94  Aligned_cols=91  Identities=14%  Similarity=0.022  Sum_probs=58.0

Q ss_pred             CEEEEeCCCcHHHH-HHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         215 DVVIQNGANSACGQ-NVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       215 ~~VLI~ga~G~vG~-~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      -+|.|.|+ |.+|. ..+..++.. +++++++++...  +...+.+.++|....   .+++++.   ....+|+|+.|+.
T Consensus        28 ~rigiIG~-G~~g~~~~~~~l~~~~~~~l~av~d~~~--~~~~~~a~~~g~~~~---~~~~~ll---~~~~~D~V~i~tp   98 (350)
T 3rc1_A           28 IRVGVIGC-ADIAWRRALPALEAEPLTEVTAIASRRW--DRAKRFTERFGGEPV---EGYPALL---ERDDVDAVYVPLP   98 (350)
T ss_dssp             EEEEEESC-CHHHHHTHHHHHHHCTTEEEEEEEESSH--HHHHHHHHHHCSEEE---ESHHHHH---TCTTCSEEEECCC
T ss_pred             eEEEEEcC-cHHHHHHHHHHHHhCCCeEEEEEEcCCH--HHHHHHHHHcCCCCc---CCHHHHh---cCCCCCEEEECCC
Confidence            47999999 99998 556655555 888888875542  223445566787654   3333321   1346899999998


Q ss_pred             chhHH-HHHHhcccCCEEEEEecc
Q psy2960         293 GNSAT-NLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       293 ~~~~~-~~~~~l~~~G~~v~~g~~  315 (405)
                      ...-. .+..++.. |+-|.+.++
T Consensus        99 ~~~h~~~~~~al~a-Gk~Vl~EKP  121 (350)
T 3rc1_A           99 AVLHAEWIDRALRA-GKHVLAEKP  121 (350)
T ss_dssp             GGGHHHHHHHHHHT-TCEEEEESS
T ss_pred             cHHHHHHHHHHHHC-CCcEEEeCC
Confidence            76554 44566655 455666643

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=95.80  E-value=0.034  Score=51.33  Aligned_cols=87  Identities=14%  Similarity=0.089  Sum_probs=63.5

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH-HhhhcCCCCCcEEEEC
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNC  290 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~Dvvld~  290 (405)
                      -.|.+|.|.|. |.+|...++.++..|++|++..++.+.     ..+.+.|+.. .   +.++ +.      ..|+|+.+
T Consensus       140 l~g~~vgIIG~-G~IG~~~A~~l~~~G~~V~~~d~~~~~-----~~~~~~g~~~-~---~l~ell~------~aDvVvl~  203 (313)
T 2ekl_A          140 LAGKTIGIVGF-GRIGTKVGIIANAMGMKVLAYDILDIR-----EKAEKINAKA-V---SLEELLK------NSDVISLH  203 (313)
T ss_dssp             CTTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSCCH-----HHHHHTTCEE-C---CHHHHHH------HCSEEEEC
T ss_pred             CCCCEEEEEee-CHHHHHHHHHHHHCCCEEEEECCCcch-----hHHHhcCcee-c---CHHHHHh------hCCEEEEe
Confidence            36899999999 999999999999999999888665432     1345777753 2   3333 32      35999998


Q ss_pred             CCchh-----H-HHHHHhcccCCEEEEEec
Q psy2960         291 VGGNS-----A-TNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       291 ~g~~~-----~-~~~~~~l~~~G~~v~~g~  314 (405)
                      +....     + ...+..+++++.++.++.
T Consensus       204 ~P~~~~t~~li~~~~l~~mk~ga~lIn~ar  233 (313)
T 2ekl_A          204 VTVSKDAKPIIDYPQFELMKDNVIIVNTSR  233 (313)
T ss_dssp             CCCCTTSCCSBCHHHHHHSCTTEEEEESSC
T ss_pred             ccCChHHHHhhCHHHHhcCCCCCEEEECCC
Confidence            87422     1 345788999988888774

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=95.80  E-value=0.024  Score=49.94  Aligned_cols=100  Identities=12%  Similarity=0.054  Sum_probs=61.1

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC--cEEEEecCCcchHHHHHHHHHcCC-cEEe-ChhhHHHHhhhcCCCCC
Q psy2960         209 NSLSPGDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLGA-DYVF-TEEELRNISRDASIPKP  284 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~--~v~~~~~~~~~~~~~~~~~~~lg~-~~v~-~~~d~~~i~~~t~g~g~  284 (405)
                      ..++||++||=.|+  |.|..+..+|+..|.  +|+++--+++..+...+.+.+.+. ..|. +..+.......  ...+
T Consensus        73 l~ikpG~~VldlG~--G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~--~~~v  148 (233)
T 4df3_A           73 LPVKEGDRILYLGI--ASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHL--VEGV  148 (233)
T ss_dssp             CCCCTTCEEEEETC--TTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTT--CCCE
T ss_pred             cCCCCCCEEEEecC--cCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccc--cceE
Confidence            67999999999998  568999999999876  577775443332222333333332 2222 22222211111  2458


Q ss_pred             cEEEECCCch-----hHHHHHHhcccCCEEEEE
Q psy2960         285 KLALNCVGGN-----SATNLLRTLVSKGVMVTY  312 (405)
Q Consensus       285 Dvvld~~g~~-----~~~~~~~~l~~~G~~v~~  312 (405)
                      |+|+....-.     .+.++.+.|+|+|+++..
T Consensus       149 DvVf~d~~~~~~~~~~l~~~~r~LKpGG~lvI~  181 (233)
T 4df3_A          149 DGLYADVAQPEQAAIVVRNARFFLRDGGYMLMA  181 (233)
T ss_dssp             EEEEECCCCTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEeccCChhHHHHHHHHHHhccCCCEEEEE
Confidence            9888655432     234567889999999875

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=95.75  E-value=0.025  Score=50.35  Aligned_cols=105  Identities=11%  Similarity=0.099  Sum_probs=67.4

Q ss_pred             HHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE--E-eChhhHHHHhhh
Q psy2960         202 YRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY--V-FTEEELRNISRD  278 (405)
Q Consensus       202 ~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~--v-~~~~d~~~i~~~  278 (405)
                      ...+.....++++.+||-.|+  |.|..+..+++..|++++++--+    +..++.+++.....  + +...|....  .
T Consensus        44 ~~~~~~~~~~~~~~~vLdiG~--G~G~~~~~l~~~~~~~v~~vD~s----~~~~~~a~~~~~~~~~~~~~~~d~~~~--~  115 (266)
T 3ujc_A           44 TKKILSDIELNENSKVLDIGS--GLGGGCMYINEKYGAHTHGIDIC----SNIVNMANERVSGNNKIIFEANDILTK--E  115 (266)
T ss_dssp             HHHHTTTCCCCTTCEEEEETC--TTSHHHHHHHHHHCCEEEEEESC----HHHHHHHHHTCCSCTTEEEEECCTTTC--C
T ss_pred             HHHHHHhcCCCCCCEEEEECC--CCCHHHHHHHHHcCCEEEEEeCC----HHHHHHHHHHhhcCCCeEEEECccccC--C
Confidence            344445567889999999998  47899999999888888888533    44566666654321  1 111111111  0


Q ss_pred             cCCCCCcEEEECCCchh---------HHHHHHhcccCCEEEEEec
Q psy2960         279 ASIPKPKLALNCVGGNS---------ATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       279 t~g~g~Dvvld~~g~~~---------~~~~~~~l~~~G~~v~~g~  314 (405)
                      .....+|+|+.+..-..         +....+.|+|+|+++....
T Consensus       116 ~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  160 (266)
T 3ujc_A          116 FPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDY  160 (266)
T ss_dssp             CCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            11357899997643222         2445789999999988763

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=95.75  E-value=0.023  Score=51.60  Aligned_cols=98  Identities=9%  Similarity=0.083  Sum_probs=66.9

Q ss_pred             ccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh
Q psy2960         192 SGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE  271 (405)
Q Consensus       192 a~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d  271 (405)
                      ..+||....+...|....---.|.+|+|.|.++-+|..+++++...||+|+++-+....    ++               
T Consensus       143 ~~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~~----l~---------------  203 (300)
T 4a26_A          143 PFTPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTST----ED---------------  203 (300)
T ss_dssp             SCCCHHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSCH----HH---------------
T ss_pred             CCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCCC----ch---------------
Confidence            34566666666666664433589999999996679999999999999997766431110    11               


Q ss_pred             HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEecc
Q psy2960         272 LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       272 ~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~  315 (405)
                      ..+ ++      ..|+||.++|.+.+. --+.++++..++.+|..
T Consensus       204 l~~~~~------~ADIVI~Avg~p~~I-~~~~vk~GavVIDvgi~  241 (300)
T 4a26_A          204 MIDYLR------TADIVIAAMGQPGYV-KGEWIKEGAAVVDVGTT  241 (300)
T ss_dssp             HHHHHH------TCSEEEECSCCTTCB-CGGGSCTTCEEEECCCE
T ss_pred             hhhhhc------cCCEEEECCCCCCCC-cHHhcCCCcEEEEEecc
Confidence            002 22      459999999976432 12567899999998853

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=95.75  E-value=0.023  Score=51.23  Aligned_cols=96  Identities=18%  Similarity=0.133  Sum_probs=66.3

Q ss_pred             ccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh
Q psy2960         192 SGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE  271 (405)
Q Consensus       192 a~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d  271 (405)
                      ..+||........+.....--.|.+|+|.|++.-+|.-+++++...||+|.++-+..                     ++
T Consensus       137 ~~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t---------------------~~  195 (288)
T 1b0a_A          137 RLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT---------------------KN  195 (288)
T ss_dssp             SSCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC---------------------SC
T ss_pred             CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc---------------------hh
Confidence            345655555555665543334799999999966789999999999999987764322                     12


Q ss_pred             HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEecc
Q psy2960         272 LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       272 ~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~  315 (405)
                      ..+ ++      ..|+||.++|.+.+. --++++++..++.+|..
T Consensus       196 L~~~~~------~ADIVI~Avg~p~lI-~~~~vk~GavVIDVgi~  233 (288)
T 1b0a_A          196 LRHHVE------NADLLIVAVGKPGFI-PGDWIKEGAIVIDVGIN  233 (288)
T ss_dssp             HHHHHH------HCSEEEECSCCTTCB-CTTTSCTTCEEEECCCE
T ss_pred             HHHHhc------cCCEEEECCCCcCcC-CHHHcCCCcEEEEccCC
Confidence            222 33      259999999977541 12457888899988843

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=95.74  E-value=0.037  Score=53.91  Aligned_cols=91  Identities=18%  Similarity=0.246  Sum_probs=65.2

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEEC
Q psy2960         211 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNC  290 (405)
Q Consensus       211 ~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~  290 (405)
                      --.|.+|+|.|. |.+|..+++.++.+|++|+++-.+.    .+...+...|.. +.   +++++     -...|+|+-+
T Consensus       254 ~l~GktVgIIG~-G~IG~~vA~~l~~~G~~Viv~d~~~----~~~~~a~~~g~~-~~---~l~el-----l~~aDiVi~~  319 (479)
T 1v8b_A          254 LISGKIVVICGY-GDVGKGCASSMKGLGARVYITEIDP----ICAIQAVMEGFN-VV---TLDEI-----VDKGDFFITC  319 (479)
T ss_dssp             CCTTSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSCH----HHHHHHHTTTCE-EC---CHHHH-----TTTCSEEEEC
T ss_pred             ccCCCEEEEEee-CHHHHHHHHHHHhCcCEEEEEeCCh----hhHHHHHHcCCE-ec---CHHHH-----HhcCCEEEEC
Confidence            347999999998 9999999999999999998885432    222233455663 32   22221     1347999999


Q ss_pred             CCchhH--HHHHHhcccCCEEEEEecc
Q psy2960         291 VGGNSA--TNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       291 ~g~~~~--~~~~~~l~~~G~~v~~g~~  315 (405)
                      .+...+  ...++.|+++..++.+|..
T Consensus       320 ~~t~~lI~~~~l~~MK~gailiNvgrg  346 (479)
T 1v8b_A          320 TGNVDVIKLEHLLKMKNNAVVGNIGHF  346 (479)
T ss_dssp             CSSSSSBCHHHHTTCCTTCEEEECSST
T ss_pred             CChhhhcCHHHHhhcCCCcEEEEeCCC
Confidence            876543  3567889999999999854

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=95.73  E-value=0.042  Score=52.18  Aligned_cols=36  Identities=8%  Similarity=0.001  Sum_probs=31.1

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHH-HcCCcEEEEecCCc
Q psy2960         214 GDVVIQNGANSACGQNVIQIAR-HWGLKTINIVRNRD  249 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~-~~G~~v~~~~~~~~  249 (405)
                      +.+|||.||+|.+|...++.+. ..|++|+++.++.+
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~   38 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVG   38 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCc
Confidence            3489999999999999998888 89999999886543

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=95.71  E-value=0.02  Score=53.16  Aligned_cols=78  Identities=12%  Similarity=0.058  Sum_probs=46.7

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc-C--CcEE-eChhhHHHHhhhcCCCCCcEEEECC
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-G--ADYV-FTEEELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l-g--~~~v-~~~~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                      +|||.||+|.+|...++.+...|++|+++.+.....+...+.+.++ +  ...+ .|-.+.+.+.+.....++|+||++.
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vih~A   81 (338)
T 1udb_A            2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFA   81 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhccCCCEEEECC
Confidence            6999999999999999999889999988764322111122222222 2  2222 2333322222221123689999998


Q ss_pred             Cc
Q psy2960         292 GG  293 (405)
Q Consensus       292 g~  293 (405)
                      |.
T Consensus        82 ~~   83 (338)
T 1udb_A           82 GL   83 (338)
T ss_dssp             SC
T ss_pred             cc
Confidence            73

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=95.71  E-value=0.012  Score=55.78  Aligned_cols=35  Identities=11%  Similarity=0.255  Sum_probs=31.6

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD  249 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~  249 (405)
                      .+|||.||+|.+|...++.+...|++|+++.++.+
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~   63 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSS   63 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCc
Confidence            58999999999999999999999999999987654

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.69  E-value=0.09  Score=42.66  Aligned_cols=98  Identities=16%  Similarity=0.071  Sum_probs=59.4

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe-ChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~-~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      .++|+|.|+ |.+|...++.+...|.+|+++.++.+...+.+......|...+. |..+...+.+. +-.++|+|+-+++
T Consensus         3 ~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a-~i~~ad~vi~~~~   80 (153)
T 1id1_A            3 KDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKA-GIDRCRAILALSD   80 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHH-TTTTCSEEEECSS
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHc-ChhhCCEEEEecC
Confidence            567999998 99999999999999999998875422111122222233554443 33332223222 2357899999998


Q ss_pred             chhHHHH----HHhcccCCEEEEEe
Q psy2960         293 GNSATNL----LRTLVSKGVMVTYG  313 (405)
Q Consensus       293 ~~~~~~~----~~~l~~~G~~v~~g  313 (405)
                      .......    .+.+.+..+++...
T Consensus        81 ~d~~n~~~~~~a~~~~~~~~ii~~~  105 (153)
T 1id1_A           81 NDADNAFVVLSAKDMSSDVKTVLAV  105 (153)
T ss_dssp             CHHHHHHHHHHHHHHTSSSCEEEEC
T ss_pred             ChHHHHHHHHHHHHHCCCCEEEEEE
Confidence            7654432    34444555666543

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=95.68  E-value=0.027  Score=55.08  Aligned_cols=91  Identities=12%  Similarity=0.182  Sum_probs=64.8

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEEC
Q psy2960         211 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNC  290 (405)
Q Consensus       211 ~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~  290 (405)
                      .-.|.+|+|.|. |.+|..+++.++.+|++|+++.++..    +...+...|.. +.   +++++     -...|+|+.+
T Consensus       274 ~L~GktVgIIG~-G~IG~~vA~~l~~~G~~V~v~d~~~~----~~~~a~~~G~~-~~---~l~el-----l~~aDiVi~~  339 (494)
T 3d64_A          274 MIAGKIAVVAGY-GDVGKGCAQSLRGLGATVWVTEIDPI----CALQAAMEGYR-VV---TMEYA-----ADKADIFVTA  339 (494)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSCHH----HHHHHHTTTCE-EC---CHHHH-----TTTCSEEEEC
T ss_pred             ccCCCEEEEEcc-CHHHHHHHHHHHHCCCEEEEEeCChH----hHHHHHHcCCE-eC---CHHHH-----HhcCCEEEEC
Confidence            347999999998 99999999999999999988854422    22223345653 22   22331     1347999999


Q ss_pred             CCchhH--HHHHHhcccCCEEEEEecc
Q psy2960         291 VGGNSA--TNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       291 ~g~~~~--~~~~~~l~~~G~~v~~g~~  315 (405)
                      ++...+  ...++.|+++..++.+|..
T Consensus       340 ~~t~~lI~~~~l~~MK~gAilINvgrg  366 (494)
T 3d64_A          340 TGNYHVINHDHMKAMRHNAIVCNIGHF  366 (494)
T ss_dssp             SSSSCSBCHHHHHHCCTTEEEEECSSS
T ss_pred             CCcccccCHHHHhhCCCCcEEEEcCCC
Confidence            865443  3568999999999998853

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=95.67  E-value=0.03  Score=51.71  Aligned_cols=103  Identities=17%  Similarity=0.228  Sum_probs=65.8

Q ss_pred             HhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcC--CcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHH-HhhhcCC
Q psy2960         206 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRN-ISRDASI  281 (405)
Q Consensus       206 ~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G--~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~-i~~~t~g  281 (405)
                      .....+++|++||-.|+ |. |..+..+++..+  .+++++..+++..+...+.+...|.+.+ +...|... ...   .
T Consensus        68 ~~~l~~~~~~~VLDiGc-G~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~---~  142 (317)
T 1dl5_A           68 MEWVGLDKGMRVLEIGG-GT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE---F  142 (317)
T ss_dssp             HHHTTCCTTCEEEEECC-TT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG---G
T ss_pred             HHhcCCCCcCEEEEecC-Cc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcccc---C
Confidence            34468899999999998 43 888899998754  3477776554443333444445564322 21223222 211   2


Q ss_pred             CCCcEEEECCCchhH-HHHHHhcccCCEEEEEe
Q psy2960         282 PKPKLALNCVGGNSA-TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       282 ~g~Dvvld~~g~~~~-~~~~~~l~~~G~~v~~g  313 (405)
                      ..+|+|+....-+.+ ....+.|+|+|+++..-
T Consensus       143 ~~fD~Iv~~~~~~~~~~~~~~~LkpgG~lvi~~  175 (317)
T 1dl5_A          143 SPYDVIFVTVGVDEVPETWFTQLKEGGRVIVPI  175 (317)
T ss_dssp             CCEEEEEECSBBSCCCHHHHHHEEEEEEEEEEB
T ss_pred             CCeEEEEEcCCHHHHHHHHHHhcCCCcEEEEEE
Confidence            469999987665444 45678999999988764

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=95.67  E-value=0.013  Score=54.49  Aligned_cols=78  Identities=14%  Similarity=0.130  Sum_probs=48.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc-CCcEE-eChhhHHHHhhhcCCCCCcEEEEC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADYV-FTEEELRNISRDASIPKPKLALNC  290 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l-g~~~v-~~~~d~~~i~~~t~g~g~Dvvld~  290 (405)
                      .|.+|||.||+|.+|...++.+...|++|+++.++.+...   +.+..+ +...+ .|-.|.+.+.+.....++|+||++
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~---~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~   95 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKR---EVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHS   95 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCG---GGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccch---hhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEEC
Confidence            4679999999999999999999889999999987543311   011122 12212 233332222221111168999999


Q ss_pred             CCc
Q psy2960         291 VGG  293 (405)
Q Consensus       291 ~g~  293 (405)
                      .|.
T Consensus        96 A~~   98 (330)
T 2pzm_A           96 AAA   98 (330)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            873

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=95.67  E-value=0.054  Score=48.90  Aligned_cols=93  Identities=13%  Similarity=0.110  Sum_probs=54.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      .+.+|+|.|+ |++|.+++..+...|++++++.++.++.++..+.+...+.-.+.+   ++++.   . ..+|+|++|++
T Consensus       118 ~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~---~~~~~---~-~~~DivIn~t~  189 (272)
T 1p77_A          118 PNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVS---MDSIP---L-QTYDLVINATS  189 (272)
T ss_dssp             TTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEE---GGGCC---C-SCCSEEEECCC
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEee---HHHhc---c-CCCCEEEECCC
Confidence            6789999999 899999999999999888877666443322222222221111222   11111   1 37899999998


Q ss_pred             chhHHH----HHHhcccCCEEEEEe
Q psy2960         293 GNSATN----LLRTLVSKGVMVTYG  313 (405)
Q Consensus       293 ~~~~~~----~~~~l~~~G~~v~~g  313 (405)
                      ......    ....+.++..++.+.
T Consensus       190 ~~~~~~~~~i~~~~l~~~~~v~D~~  214 (272)
T 1p77_A          190 AGLSGGTASVDAEILKLGSAFYDMQ  214 (272)
T ss_dssp             C-------CCCHHHHHHCSCEEESC
T ss_pred             CCCCCCCCCCCHHHcCCCCEEEEee
Confidence            654321    123455566666654

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=95.63  E-value=0.041  Score=49.61  Aligned_cols=103  Identities=18%  Similarity=0.252  Sum_probs=62.6

Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHc-C--CcEE-eChhhHHHHhhhcC
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSL-G--ADYV-FTEEELRNISRDAS  280 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~--G~~v~~~~~~~~~~~~~~~~~~~l-g--~~~v-~~~~d~~~i~~~t~  280 (405)
                      ....+++|++||-.|+ | .|..+..+++..  +.+++++-.+++..+...+.+... |  .+.+ +...|..+.  ...
T Consensus        93 ~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~--~~~  168 (280)
T 1i9g_A           93 HEGDIFPGARVLEAGA-G-SGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADS--ELP  168 (280)
T ss_dssp             HHTTCCTTCEEEEECC-T-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGC--CCC
T ss_pred             HHcCCCCCCEEEEEcc-c-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhc--CCC
Confidence            4467899999999998 4 789999999976  456666643332222222223333 4  2212 212222221  011


Q ss_pred             CCCCcEEEECCCc--hhHHHHHHhcccCCEEEEEe
Q psy2960         281 IPKPKLALNCVGG--NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       281 g~g~Dvvld~~g~--~~~~~~~~~l~~~G~~v~~g  313 (405)
                      ...+|+|+.....  ..+..+.+.|+++|+++...
T Consensus       169 ~~~~D~v~~~~~~~~~~l~~~~~~L~pgG~l~~~~  203 (280)
T 1i9g_A          169 DGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYV  203 (280)
T ss_dssp             TTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             CCceeEEEECCcCHHHHHHHHHHhCCCCCEEEEEe
Confidence            3468998876554  34566789999999998875

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=95.61  E-value=0.024  Score=51.47  Aligned_cols=97  Identities=10%  Similarity=0.098  Sum_probs=65.9

Q ss_pred             ccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh
Q psy2960         192 SGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE  271 (405)
Q Consensus       192 a~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d  271 (405)
                      ..+||+.......+....---.|.+|+|.|++.-+|.-+++++...||+|.++-+..                     .+
T Consensus       143 ~~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t---------------------~~  201 (301)
T 1a4i_A          143 CFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT---------------------AH  201 (301)
T ss_dssp             CCCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC---------------------SS
T ss_pred             CccCchHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCc---------------------cc
Confidence            355655555555555433224799999999966799999999999999977653211                     12


Q ss_pred             HHHHhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEecc
Q psy2960         272 LRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       272 ~~~i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~  315 (405)
                      ..+   .+  +..|+||.++|.+.+ -.-++++++..++.+|..
T Consensus       202 L~~---~~--~~ADIVI~Avg~p~~-I~~~~vk~GavVIDVgi~  239 (301)
T 1a4i_A          202 LDE---EV--NKGDILVVATGQPEM-VKGEWIKPGAIVIDCGIN  239 (301)
T ss_dssp             HHH---HH--TTCSEEEECCCCTTC-BCGGGSCTTCEEEECCCB
T ss_pred             HHH---Hh--ccCCEEEECCCCccc-CCHHHcCCCcEEEEccCC
Confidence            222   11  246999999998754 112557899999999853

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=95.61  E-value=0.032  Score=49.92  Aligned_cols=66  Identities=12%  Similarity=0.193  Sum_probs=44.1

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCCc
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGG  293 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~  293 (405)
                      +|||.||+|.+|...++.+. .|++|+++.++.+.     +    -+  ...|..|.+.+.+...+.++|+||++.|.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~-----~----~~--~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~   67 (273)
T 2ggs_A            2 RTLITGASGQLGIELSRLLS-ERHEVIKVYNSSEI-----Q----GG--YKLDLTDFPRLEDFIIKKRPDVIINAAAM   67 (273)
T ss_dssp             CEEEETTTSHHHHHHHHHHT-TTSCEEEEESSSCC-----T----TC--EECCTTSHHHHHHHHHHHCCSEEEECCCC
T ss_pred             EEEEECCCChhHHHHHHHHh-cCCeEEEecCCCcC-----C----CC--ceeccCCHHHHHHHHHhcCCCEEEECCcc
Confidence            59999999999999998887 48999999876532     1    12  33444433222222111258999999974

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=95.60  E-value=0.0046  Score=54.51  Aligned_cols=35  Identities=14%  Similarity=0.235  Sum_probs=31.5

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      +++|||.||+|++|.+.++.+...|++|+++.++.
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~   36 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRR   36 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCc
Confidence            57899999999999999998888899999988664

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=95.60  E-value=0.034  Score=48.38  Aligned_cols=103  Identities=9%  Similarity=0.055  Sum_probs=62.1

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHcCCc-EE-eChhhHHH-HhhhcC-C-
Q psy2960         209 NSLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGAD-YV-FTEEELRN-ISRDAS-I-  281 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~aiqla~~~--G~~v~~~~~~~~~~~~~~~~~~~lg~~-~v-~~~~d~~~-i~~~t~-g-  281 (405)
                      ....++++||-.|+  |.|..++.+|+.+  +.+++++-.+++..+...+.+...|.. .+ +-..|..+ +.+... + 
T Consensus        65 ~~~~~~~~vLdiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~  142 (229)
T 2avd_A           65 ARLIQAKKALDLGT--FTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGE  142 (229)
T ss_dssp             HHHTTCCEEEEECC--TTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTC
T ss_pred             HHhcCCCEEEEEcC--CccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCC
Confidence            34567899999998  4789999999987  456666654443333334444455542 11 21222222 222221 1 


Q ss_pred             -CCCcEEEECCCc----hhHHHHHHhcccCCEEEEEe
Q psy2960         282 -PKPKLALNCVGG----NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       282 -~g~Dvvld~~g~----~~~~~~~~~l~~~G~~v~~g  313 (405)
                       ..+|+|+-....    ..+..+.++|+++|.++...
T Consensus       143 ~~~~D~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~  179 (229)
T 2avd_A          143 AGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLR  179 (229)
T ss_dssp             TTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence             579998865433    23456779999999998754

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=95.56  E-value=0.039  Score=52.06  Aligned_cols=89  Identities=16%  Similarity=0.151  Sum_probs=58.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                      .|.+|.|.|. |.+|...++.++.+|++ |++..++.+.    .+.+.++|+..+   .+++++.+     ..|+|+.++
T Consensus       163 ~g~tvgIIG~-G~IG~~vA~~l~~~G~~~V~~~d~~~~~----~~~~~~~g~~~~---~~l~ell~-----~aDvV~l~~  229 (364)
T 2j6i_A          163 EGKTIATIGA-GRIGYRVLERLVPFNPKELLYYDYQALP----KDAEEKVGARRV---ENIEELVA-----QADIVTVNA  229 (364)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGCCSEEEEECSSCCC----HHHHHHTTEEEC---SSHHHHHH-----TCSEEEECC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCCcEEEEECCCccc----hhHHHhcCcEec---CCHHHHHh-----cCCEEEECC
Confidence            6899999999 99999999999999998 8887655433    233456665422   12233111     357777777


Q ss_pred             Cch-----hH-HHHHHhcccCCEEEEEec
Q psy2960         292 GGN-----SA-TNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       292 g~~-----~~-~~~~~~l~~~G~~v~~g~  314 (405)
                      ...     .+ ...+..|++++.++.++.
T Consensus       230 P~t~~t~~li~~~~l~~mk~ga~lIn~ar  258 (364)
T 2j6i_A          230 PLHAGTKGLINKELLSKFKKGAWLVNTAR  258 (364)
T ss_dssp             CCSTTTTTCBCHHHHTTSCTTEEEEECSC
T ss_pred             CCChHHHHHhCHHHHhhCCCCCEEEECCC
Confidence            642     11 234567777777776653

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=95.56  E-value=0.025  Score=51.83  Aligned_cols=69  Identities=6%  Similarity=0.109  Sum_probs=45.3

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      +|||.||+|.+|...++.+...|++|+++.++.+......    ..+...+ .|..|.. +.+...  + |+||++.+
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~----~~~~~~~~~Dl~d~~-~~~~~~--~-d~vih~A~   71 (312)
T 3ko8_A            2 RIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFV----NPSAELHVRDLKDYS-WGAGIK--G-DVVFHFAA   71 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGS----CTTSEEECCCTTSTT-TTTTCC--C-SEEEECCS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhc----CCCceEEECccccHH-HHhhcC--C-CEEEECCC
Confidence            7999999999999999999999999999987654321111    2222222 1222222 333322  2 99999988

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=95.56  E-value=0.22  Score=45.99  Aligned_cols=89  Identities=13%  Similarity=0.119  Sum_probs=55.5

Q ss_pred             EEEEeCCCcHHHHHH-H-HHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCCc
Q psy2960         216 VVIQNGANSACGQNV-I-QIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGG  293 (405)
Q Consensus       216 ~VLI~ga~G~vG~~a-i-qla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~  293 (405)
                      +|.|.|+ |.+|... + .+.+ .+++++++++....  ...+.+.++|...++  .+..++.   ....+|+|+.|+..
T Consensus         2 ~vgiiG~-G~~g~~~~~~~l~~-~~~~~vav~d~~~~--~~~~~~~~~g~~~~~--~~~~~~l---~~~~~D~V~i~tp~   72 (332)
T 2glx_A            2 RWGLIGA-STIAREWVIGAIRA-TGGEVVSMMSTSAE--RGAAYATENGIGKSV--TSVEELV---GDPDVDAVYVSTTN   72 (332)
T ss_dssp             EEEEESC-CHHHHHTHHHHHHH-TTCEEEEEECSCHH--HHHHHHHHTTCSCCB--SCHHHHH---TCTTCCEEEECSCG
T ss_pred             eEEEEcc-cHHHHHhhhHHhhc-CCCeEEEEECCCHH--HHHHHHHHcCCCccc--CCHHHHh---cCCCCCEEEEeCCh
Confidence            6899999 9999876 5 4455 78888888755432  223445667764333  2333321   12468999999987


Q ss_pred             hhHH-HHHHhcccCCEEEEEec
Q psy2960         294 NSAT-NLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       294 ~~~~-~~~~~l~~~G~~v~~g~  314 (405)
                      ..-. .+..++.. |+-+.+.+
T Consensus        73 ~~h~~~~~~al~~-Gk~v~~ek   93 (332)
T 2glx_A           73 ELHREQTLAAIRA-GKHVLCEK   93 (332)
T ss_dssp             GGHHHHHHHHHHT-TCEEEECS
T ss_pred             hHhHHHHHHHHHC-CCeEEEeC
Confidence            6544 44566665 55555543

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.55  E-value=0.039  Score=49.82  Aligned_cols=91  Identities=12%  Similarity=0.192  Sum_probs=59.6

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      +.+|||.|+ |.+|...++.+...|.+|+++.++.+..        .-+...+ .|..|.+.+.+... ..+|+||.+.+
T Consensus         3 ~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~--------~~~~~~~~~Dl~d~~~~~~~~~-~~~d~vih~a~   72 (286)
T 3gpi_A            3 LSKILIAGC-GDLGLELARRLTAQGHEVTGLRRSAQPM--------PAGVQTLIADVTRPDTLASIVH-LRPEILVYCVA   72 (286)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTCCEEEEECTTSCC--------CTTCCEEECCTTCGGGCTTGGG-GCCSEEEECHH
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCcccc--------ccCCceEEccCCChHHHHHhhc-CCCCEEEEeCC
Confidence            468999995 9999999999999999999999775431        1233333 24333333333222 24999999986


Q ss_pred             ch-------------hHHHHHHhcccC--CEEEEEec
Q psy2960         293 GN-------------SATNLLRTLVSK--GVMVTYGG  314 (405)
Q Consensus       293 ~~-------------~~~~~~~~l~~~--G~~v~~g~  314 (405)
                      ..             .....++.++..  ++|+.++.
T Consensus        73 ~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS  109 (286)
T 3gpi_A           73 ASEYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSS  109 (286)
T ss_dssp             HHHHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcc
Confidence            42             123445555543  58988875

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=95.55  E-value=0.049  Score=50.21  Aligned_cols=93  Identities=9%  Similarity=0.047  Sum_probs=61.9

Q ss_pred             CEEEEeCCCcHHHHHHHHHH-H-HcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         215 DVVIQNGANSACGQNVIQIA-R-HWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla-~-~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      -+|.|.|+ |.+|...+..+ + .-+++++++++....+ ...+.++.+|.....  .+.+++.+.+++.++|+|++|++
T Consensus         5 irVaIIG~-G~iG~~~~~~l~~~~~~~elvav~d~~~~~-~~~~~a~~~g~~~~~--~~~e~ll~~~~~~~iDvV~~atp   80 (312)
T 1nvm_B            5 LKVAIIGS-GNIGTDLMIKVLRNAKYLEMGAMVGIDAAS-DGLARAQRMGVTTTY--AGVEGLIKLPEFADIDFVFDATS   80 (312)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHHCSSEEEEEEECSCTTC-HHHHHHHHTTCCEES--SHHHHHHHSGGGGGEEEEEECSC
T ss_pred             CEEEEEcC-cHHHHHHHHHHHhhCcCeEEEEEEeCChhh-hHHHHHHHcCCCccc--CCHHHHHhccCCCCCcEEEECCC
Confidence            47999996 99999988888 4 4577888888654322 124556678875332  23334434343467899999999


Q ss_pred             chhH-HHHHHhccc--CCEEEE
Q psy2960         293 GNSA-TNLLRTLVS--KGVMVT  311 (405)
Q Consensus       293 ~~~~-~~~~~~l~~--~G~~v~  311 (405)
                      .+.- ..+..+++.  |..++.
T Consensus        81 ~~~h~~~a~~al~a~~Gk~Vi~  102 (312)
T 1nvm_B           81 ASAHVQNEALLRQAKPGIRLID  102 (312)
T ss_dssp             HHHHHHHHHHHHHHCTTCEEEE
T ss_pred             hHHHHHHHHHHHHhCCCCEEEE
Confidence            6544 345677777  777665

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=95.53  E-value=0.01  Score=54.49  Aligned_cols=35  Identities=17%  Similarity=0.163  Sum_probs=29.7

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      +.+|||.||+|.+|...++.+...|.+|+++.++.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~   36 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRR   36 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC---
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCC
Confidence            56899999999999999999999999999987653

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=95.52  E-value=0.037  Score=51.33  Aligned_cols=77  Identities=12%  Similarity=0.061  Sum_probs=47.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcC-----CcEE-eChhhHHHHhhhcCCCCCcE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG-----ADYV-FTEEELRNISRDASIPKPKL  286 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg-----~~~v-~~~~d~~~i~~~t~g~g~Dv  286 (405)
                      .+.+|||.||+|.+|...+..+...|++|++++++.+... +...+.++.     ...+ .|-.|...+.+..  .++|+
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--~~~d~   80 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVK-KVKHLLDLPKAETHLTLWKADLADEGSFDEAI--KGCTG   80 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHH-HHHHHHTSTTHHHHEEEEECCTTSTTTTHHHH--TTCSE
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhH-HHHHHHhcccCCCeEEEEEcCCCCHHHHHHHH--cCCCE
Confidence            4689999999999999999998889999999887654321 122222222     1112 2333322233332  25899


Q ss_pred             EEECCC
Q psy2960         287 ALNCVG  292 (405)
Q Consensus       287 vld~~g  292 (405)
                      ||.+.+
T Consensus        81 Vih~A~   86 (337)
T 2c29_D           81 VFHVAT   86 (337)
T ss_dssp             EEECCC
T ss_pred             EEEecc
Confidence            999875

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=95.52  E-value=0.02  Score=52.11  Aligned_cols=32  Identities=9%  Similarity=-0.019  Sum_probs=28.4

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      +|||.||+|.+|...++.+. .|.+|+++.++.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~   33 (299)
T 1n2s_A            2 NILLFGKTGQVGWELQRSLA-PVGNLIALDVHS   33 (299)
T ss_dssp             EEEEECTTSHHHHHHHHHTT-TTSEEEEECTTC
T ss_pred             eEEEECCCCHHHHHHHHHhh-cCCeEEEecccc
Confidence            69999999999999998888 799999987653

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=95.47  E-value=0.03  Score=48.83  Aligned_cols=99  Identities=16%  Similarity=0.189  Sum_probs=60.7

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCC-------cEEEEecCCcchHHHHHHHHHcC-----CcEE-eChhhHHH-H
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHWGL-------KTINIVRNRDDIDKLKSYLKSLG-----ADYV-FTEEELRN-I  275 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~G~-------~v~~~~~~~~~~~~~~~~~~~lg-----~~~v-~~~~d~~~-i  275 (405)
                      .++++++||-.|+ | .|..+..+++..|.       +++++-.+++..+...+.+...+     .+.+ +...|... .
T Consensus        81 ~~~~~~~VLdiG~-G-~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~  158 (227)
T 1r18_A           81 HLKPGARILDVGS-G-SGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGY  158 (227)
T ss_dssp             TCCTTCEEEEESC-T-TSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCC
T ss_pred             hCCCCCEEEEECC-C-ccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCC
Confidence            5789999999998 4 48899999998774       67776544333222222233322     1111 11122222 1


Q ss_pred             hhhcCCCCCcEEEECCCchhH-HHHHHhcccCCEEEEEe
Q psy2960         276 SRDASIPKPKLALNCVGGNSA-TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       276 ~~~t~g~g~Dvvld~~g~~~~-~~~~~~l~~~G~~v~~g  313 (405)
                      ..   ...+|+|+.+..-..+ ....+.|+++|+++..-
T Consensus       159 ~~---~~~fD~I~~~~~~~~~~~~~~~~LkpgG~lvi~~  194 (227)
T 1r18_A          159 PP---NAPYNAIHVGAAAPDTPTELINQLASGGRLIVPV  194 (227)
T ss_dssp             GG---GCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             Cc---CCCccEEEECCchHHHHHHHHHHhcCCCEEEEEE
Confidence            11   2468999987765544 56689999999998764

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=95.47  E-value=0.052  Score=48.28  Aligned_cols=34  Identities=15%  Similarity=0.160  Sum_probs=29.5

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      +.+|+|.|+ |++|..+++.+...|...+.+++.+
T Consensus        31 ~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d   64 (249)
T 1jw9_B           31 DSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFD   64 (249)
T ss_dssp             HCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            578999999 9999999999999999777777554

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=95.45  E-value=0.013  Score=53.09  Aligned_cols=31  Identities=19%  Similarity=0.166  Sum_probs=28.7

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEec
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVR  246 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~  246 (405)
                      +|||.||+|.+|...++.+...|.+|+++.+
T Consensus         7 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r   37 (287)
T 3sc6_A            7 RVIITGANGQLGKQLQEELNPEEYDIYPFDK   37 (287)
T ss_dssp             EEEEESTTSHHHHHHHHHSCTTTEEEEEECT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEecc
Confidence            7999999999999999998888999999875

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=95.44  E-value=0.022  Score=53.77  Aligned_cols=35  Identities=20%  Similarity=0.303  Sum_probs=31.4

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD  249 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~  249 (405)
                      .+|||.||+|.+|...++.+...|++|+++.++.+
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   59 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS   59 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCcc
Confidence            57999999999999999999889999999987643

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=95.42  E-value=0.005  Score=56.76  Aligned_cols=114  Identities=13%  Similarity=0.117  Sum_probs=68.9

Q ss_pred             ccCCCcHHHHHHHHHhh--------cC-CCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcC
Q psy2960         192 SGITSNPCTAYRMLKDY--------NS-LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG  262 (405)
Q Consensus       192 a~~~~~~~ta~~al~~~--------~~-~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg  262 (405)
                      ..+||....+...+...        .+ --.|.+|+|.|++.-+|..+++++...|++|+++.++....   ++....++
T Consensus       146 ~~~PcTp~a~v~ll~~~~~~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l---~~ra~~la  222 (320)
T 1edz_A          146 SILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQK---FTRGESLK  222 (320)
T ss_dssp             CCCCHHHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEE---EESCCCSS
T ss_pred             CcCCCcHHHHHHHHHhhcccccccccCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHH---HhHHHHHh
Confidence            45666666666556552        12 23789999999954679999999999999987764442211   11112222


Q ss_pred             C--cEE-----eChhhHHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEec
Q psy2960         263 A--DYV-----FTEEELRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       263 ~--~~v-----~~~~d~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~  314 (405)
                      .  ...     .+.++..+ +.+      +|+||.++|.+...-.-+.++++-.++.+|.
T Consensus       223 ~~~~~~t~~~~t~~~~L~e~l~~------ADIVIsAtg~p~~vI~~e~vk~GavVIDVgi  276 (320)
T 1edz_A          223 LNKHHVEDLGEYSEDLLKKCSLD------SDVVITGVPSENYKFPTEYIKEGAVCINFAC  276 (320)
T ss_dssp             CCCCEEEEEEECCHHHHHHHHHH------CSEEEECCCCTTCCBCTTTSCTTEEEEECSS
T ss_pred             hhcccccccccccHhHHHHHhcc------CCEEEECCCCCcceeCHHHcCCCeEEEEcCC
Confidence            2  111     11145555 443      5999999998643111234678777777774

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=95.42  E-value=0.12  Score=49.73  Aligned_cols=96  Identities=14%  Similarity=0.212  Sum_probs=67.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe-ChhhHHHHhhhcCCCCCcEEEECC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~-~~~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                      .+.+|+|.|. |.+|+..++.++..|.+++++..+    +++.+.+++.|...++ |..+.+ +.+..+-..+|+|+-++
T Consensus         3 ~~~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d----~~~v~~~~~~g~~vi~GDat~~~-~L~~agi~~A~~viv~~   76 (413)
T 3l9w_A            3 HGMRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHD----PDHIETLRKFGMKVFYGDATRMD-LLESAGAAKAEVLINAI   76 (413)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEECC----HHHHHHHHHTTCCCEESCTTCHH-HHHHTTTTTCSEEEECC
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEECC----HHHHHHHHhCCCeEEEcCCCCHH-HHHhcCCCccCEEEECC
Confidence            4567999999 999999999999999999888543    4557777888876554 333322 33333445789999999


Q ss_pred             CchhHHH----HHHhcccCCEEEEEec
Q psy2960         292 GGNSATN----LLRTLVSKGVMVTYGG  314 (405)
Q Consensus       292 g~~~~~~----~~~~l~~~G~~v~~g~  314 (405)
                      +......    ..+.+.+.-+++....
T Consensus        77 ~~~~~n~~i~~~ar~~~p~~~Iiara~  103 (413)
T 3l9w_A           77 DDPQTNLQLTEMVKEHFPHLQIIARAR  103 (413)
T ss_dssp             SSHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred             CChHHHHHHHHHHHHhCCCCeEEEEEC
Confidence            9765432    3455667777776653

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=95.42  E-value=0.4  Score=44.25  Aligned_cols=88  Identities=9%  Similarity=0.070  Sum_probs=57.2

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCCch
Q psy2960         216 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGN  294 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~~  294 (405)
                      +|.|.|+ |.+|...+..++.. +++++++++...  +...+.+..+|..    +.+++++.+   ...+|+|+.|+...
T Consensus         5 ~vgiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~--~~~~~~~~~~~~~----~~~~~~~l~---~~~~D~V~i~tp~~   74 (331)
T 4hkt_A            5 RFGLLGA-GRIGKVHAKAVSGNADARLVAVADAFP--AAAEAIAGAYGCE----VRTIDAIEA---AADIDAVVICTPTD   74 (331)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHCTTEEEEEEECSSH--HHHHHHHHHTTCE----ECCHHHHHH---CTTCCEEEECSCGG
T ss_pred             EEEEECC-CHHHHHHHHHHhhCCCcEEEEEECCCH--HHHHHHHHHhCCC----cCCHHHHhc---CCCCCEEEEeCCch
Confidence            6899999 99999888777665 788888875532  2223455667765    334444221   24689999999876


Q ss_pred             hHH-HHHHhcccCCEEEEEec
Q psy2960         295 SAT-NLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       295 ~~~-~~~~~l~~~G~~v~~g~  314 (405)
                      .-. .+..++.. |+-+.+.+
T Consensus        75 ~h~~~~~~al~~-gk~v~~EK   94 (331)
T 4hkt_A           75 THADLIERFARA-GKAIFCEK   94 (331)
T ss_dssp             GHHHHHHHHHHT-TCEEEECS
T ss_pred             hHHHHHHHHHHc-CCcEEEec
Confidence            544 44566655 45566654

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=95.39  E-value=0.044  Score=51.35  Aligned_cols=88  Identities=20%  Similarity=0.249  Sum_probs=59.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      .|.+|.|.|. |.+|...++.++.+|++|++..++...    .+.+.++|+..+   .+++++.     ...|+|+.++.
T Consensus       163 ~gktvGIIG~-G~IG~~vA~~l~~~G~~V~~~dr~~~~----~~~~~~~g~~~~---~~l~ell-----~~aDvV~l~~P  229 (351)
T 3jtm_A          163 EGKTIGTVGA-GRIGKLLLQRLKPFGCNLLYHDRLQMA----PELEKETGAKFV---EDLNEML-----PKCDVIVINMP  229 (351)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGCCEEEEECSSCCC----HHHHHHHCCEEC---SCHHHHG-----GGCSEEEECSC
T ss_pred             cCCEEeEEEe-CHHHHHHHHHHHHCCCEEEEeCCCccC----HHHHHhCCCeEc---CCHHHHH-----hcCCEEEECCC
Confidence            6899999999 999999999999999998888655433    234456676433   1233311     13588887776


Q ss_pred             ch-----hH-HHHHHhcccCCEEEEEe
Q psy2960         293 GN-----SA-TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       293 ~~-----~~-~~~~~~l~~~G~~v~~g  313 (405)
                      ..     .+ ...+..|+++..++.++
T Consensus       230 lt~~t~~li~~~~l~~mk~gailIN~a  256 (351)
T 3jtm_A          230 LTEKTRGMFNKELIGKLKKGVLIVNNA  256 (351)
T ss_dssp             CCTTTTTCBSHHHHHHSCTTEEEEECS
T ss_pred             CCHHHHHhhcHHHHhcCCCCCEEEECc
Confidence            31     11 34567778877777766

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=95.39  E-value=0.04  Score=56.84  Aligned_cols=81  Identities=9%  Similarity=0.049  Sum_probs=50.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHH---HcCCcEE-eChhhHHHHhhhcCCCCCcEEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK---SLGADYV-FTEEELRNISRDASIPKPKLAL  288 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~---~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvl  288 (405)
                      .+.+|||.||+|.+|...++.+...|++|+++.++.+......+.+.   ..+...+ .|-.+.+.+.+.....++|+||
T Consensus        10 ~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~D~Vi   89 (699)
T 1z45_A           10 TSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVI   89 (699)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhCCCCEEE
Confidence            46899999999999999999998899999998865443222222222   2334333 2433322222221112789999


Q ss_pred             ECCCc
Q psy2960         289 NCVGG  293 (405)
Q Consensus       289 d~~g~  293 (405)
                      .+.+.
T Consensus        90 h~A~~   94 (699)
T 1z45_A           90 HFAGL   94 (699)
T ss_dssp             ECCSC
T ss_pred             ECCcc
Confidence            99874

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=95.35  E-value=0.029  Score=53.12  Aligned_cols=74  Identities=9%  Similarity=0.058  Sum_probs=49.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEEECC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                      .+.+|||.||+|.+|...++.+...|++|+++.++.+....    ....+...+ .|-.|.+.+.+..  .++|+||.+.
T Consensus        28 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----~~~~~v~~~~~Dl~d~~~~~~~~--~~~d~Vih~A  101 (379)
T 2c5a_A           28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMT----EDMFCDEFHLVDLRVMENCLKVT--EGVDHVFNLA  101 (379)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSC----GGGTCSEEEECCTTSHHHHHHHH--TTCSEEEECC
T ss_pred             cCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchh----hccCCceEEECCCCCHHHHHHHh--CCCCEEEECc
Confidence            35689999999999999999998899999999876543211    111233322 2434433333332  3789999998


Q ss_pred             C
Q psy2960         292 G  292 (405)
Q Consensus       292 g  292 (405)
                      +
T Consensus       102 ~  102 (379)
T 2c5a_A          102 A  102 (379)
T ss_dssp             C
T ss_pred             e
Confidence            7

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.34  E-value=0.086  Score=47.45  Aligned_cols=88  Identities=15%  Similarity=0.123  Sum_probs=59.6

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe-ChhhHHHHhhhcCCCCCcEEEECCCc
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVGG  293 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~-~~~d~~~i~~~t~g~g~Dvvld~~g~  293 (405)
                      .+|||.|+ |.+|...+..+...|.+|++++++.++    .+.+...+...+. |..|+   .    -.++|+||.+.+.
T Consensus         6 ~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~----~~~~~~~~~~~~~~D~~d~---~----~~~~d~vi~~a~~   73 (286)
T 3ius_A            6 GTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQ----MEAIRASGAEPLLWPGEEP---S----LDGVTHLLISTAP   73 (286)
T ss_dssp             CEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGG----HHHHHHTTEEEEESSSSCC---C----CTTCCEEEECCCC
T ss_pred             CcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhh----hhhHhhCCCeEEEeccccc---c----cCCCCEEEECCCc
Confidence            58999998 999999999999999999999987654    2333445544332 32231   1    3578999999974


Q ss_pred             h-----hHHHHHHhcc----cCCEEEEEec
Q psy2960         294 N-----SATNLLRTLV----SKGVMVTYGG  314 (405)
Q Consensus       294 ~-----~~~~~~~~l~----~~G~~v~~g~  314 (405)
                      .     .....++.++    .-.+|+.++.
T Consensus        74 ~~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss  103 (286)
T 3ius_A           74 DSGGDPVLAALGDQIAARAAQFRWVGYLST  103 (286)
T ss_dssp             BTTBCHHHHHHHHHHHHTGGGCSEEEEEEE
T ss_pred             cccccHHHHHHHHHHHhhcCCceEEEEeec
Confidence            2     2233344443    3368998875

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=95.32  E-value=0.048  Score=47.35  Aligned_cols=99  Identities=16%  Similarity=0.118  Sum_probs=60.2

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcC--CcEEEEecCCcchHHHHHHHHHcCC-----cEE-eChhhHHH-HhhhcC
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLGA-----DYV-FTEEELRN-ISRDAS  280 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~G--~~v~~~~~~~~~~~~~~~~~~~lg~-----~~v-~~~~d~~~-i~~~t~  280 (405)
                      .++++++||-.|+ | .|..+..+++..|  .+++++-.+++..+...+.+...|.     +.+ +...|... ..   .
T Consensus        74 ~~~~~~~vLDiG~-G-~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~---~  148 (226)
T 1i1n_A           74 QLHEGAKALDVGS-G-SGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA---E  148 (226)
T ss_dssp             TSCTTCEEEEETC-T-TSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG---G
T ss_pred             hCCCCCEEEEEcC-C-cCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcc---c
Confidence            4789999999998 3 4888899999886  4666664443332222233333331     111 11122211 11   1


Q ss_pred             CCCCcEEEECCCchhH-HHHHHhcccCCEEEEEe
Q psy2960         281 IPKPKLALNCVGGNSA-TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       281 g~g~Dvvld~~g~~~~-~~~~~~l~~~G~~v~~g  313 (405)
                      ...+|+|+....-..+ ..+.+.|+|+|+++..-
T Consensus       149 ~~~fD~i~~~~~~~~~~~~~~~~LkpgG~lv~~~  182 (226)
T 1i1n_A          149 EAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPV  182 (226)
T ss_dssp             GCCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             CCCcCEEEECCchHHHHHHHHHhcCCCcEEEEEE
Confidence            3468999876654433 56789999999998864

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=95.32  E-value=0.06  Score=47.65  Aligned_cols=106  Identities=11%  Similarity=0.015  Sum_probs=65.6

Q ss_pred             HHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc--EEeChhhHHHHhhhcCC
Q psy2960         204 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YVFTEEELRNISRDASI  281 (405)
Q Consensus       204 al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~--~v~~~~d~~~i~~~t~g  281 (405)
                      .+.....++++++||-.|+  |.|..+..+++..+++++++--+.+..+...+.+...|..  .-+-..|...+.  ...
T Consensus        37 ~l~~l~~~~~~~~vLDiG~--G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~  112 (257)
T 3f4k_A           37 AVSFINELTDDAKIADIGC--GTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLP--FQN  112 (257)
T ss_dssp             HHTTSCCCCTTCEEEEETC--TTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCS--SCT
T ss_pred             HHHHHhcCCCCCeEEEeCC--CCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCC--CCC
Confidence            4444457889999999998  4599999999998887777754444333334444555542  112112221111  113


Q ss_pred             CCCcEEEECCC-----c-hhHHHHHHhcccCCEEEEEe
Q psy2960         282 PKPKLALNCVG-----G-NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       282 ~g~Dvvld~~g-----~-~~~~~~~~~l~~~G~~v~~g  313 (405)
                      ..+|+|+....     - ..+....+.|+|+|+++...
T Consensus       113 ~~fD~v~~~~~l~~~~~~~~l~~~~~~L~pgG~l~~~~  150 (257)
T 3f4k_A          113 EELDLIWSEGAIYNIGFERGMNEWSKYLKKGGFIAVSE  150 (257)
T ss_dssp             TCEEEEEEESCSCCCCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CCEEEEEecChHhhcCHHHHHHHHHHHcCCCcEEEEEE
Confidence            57899975322     1 23345678999999998875

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=95.32  E-value=0.029  Score=52.21  Aligned_cols=74  Identities=11%  Similarity=0.121  Sum_probs=46.5

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHc--CCcEEEEecCCcc-hHHHHHHHHHc---CCcEE-eChhhHHHHhhhcCCCCCcEE
Q psy2960         215 DVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDD-IDKLKSYLKSL---GADYV-FTEEELRNISRDASIPKPKLA  287 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~--G~~v~~~~~~~~~-~~~~~~~~~~l---g~~~v-~~~~d~~~i~~~t~g~g~Dvv  287 (405)
                      .+|||.||+|.+|...++.+...  |.+|+++.++... ..   +.+..+   +...+ .|-.|...+.+..  .++|+|
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~---~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--~~~d~v   79 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNK---ANLEAILGDRVELVVGDIADAELVDKLA--AKADAI   79 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCG---GGTGGGCSSSEEEEECCTTCHHHHHHHH--TTCSEE
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCCh---hHHhhhccCCeEEEECCCCCHHHHHHHh--hcCCEE
Confidence            47999999999999999888877  8899998865321 11   111222   22222 2333333333332  246999


Q ss_pred             EECCCc
Q psy2960         288 LNCVGG  293 (405)
Q Consensus       288 ld~~g~  293 (405)
                      |.+.|.
T Consensus        80 ih~A~~   85 (348)
T 1oc2_A           80 VHYAAE   85 (348)
T ss_dssp             EECCSC
T ss_pred             EECCcc
Confidence            999974

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=95.30  E-value=0.31  Score=45.36  Aligned_cols=89  Identities=9%  Similarity=0.002  Sum_probs=56.7

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCCch
Q psy2960         216 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGN  294 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~~  294 (405)
                      +|.|.|+ |.+|...+...+.. +++++++++...  +...+.+.++|.. ++  .++.++   .....+|+|+.|+...
T Consensus         6 rvgiiG~-G~~g~~~~~~l~~~~~~~l~av~d~~~--~~~~~~a~~~g~~-~~--~~~~~~---l~~~~~D~V~i~tp~~   76 (344)
T 3euw_A            6 RIALFGA-GRIGHVHAANIAANPDLELVVIADPFI--EGAQRLAEANGAE-AV--ASPDEV---FARDDIDGIVIGSPTS   76 (344)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHCTTEEEEEEECSSH--HHHHHHHHTTTCE-EE--SSHHHH---TTCSCCCEEEECSCGG
T ss_pred             EEEEECC-cHHHHHHHHHHHhCCCcEEEEEECCCH--HHHHHHHHHcCCc-ee--CCHHHH---hcCCCCCEEEEeCCch
Confidence            6999999 99999888777665 778887775532  2223445667743 33  233332   1234789999999876


Q ss_pred             hHHH-HHHhcccCCEEEEEec
Q psy2960         295 SATN-LLRTLVSKGVMVTYGG  314 (405)
Q Consensus       295 ~~~~-~~~~l~~~G~~v~~g~  314 (405)
                      .-.. +..++..+ +-+.+.+
T Consensus        77 ~h~~~~~~al~~g-k~v~~EK   96 (344)
T 3euw_A           77 THVDLITRAVERG-IPALCEK   96 (344)
T ss_dssp             GHHHHHHHHHHTT-CCEEECS
T ss_pred             hhHHHHHHHHHcC-CcEEEEC
Confidence            5544 45556554 4455654

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=95.27  E-value=0.046  Score=52.00  Aligned_cols=88  Identities=14%  Similarity=0.045  Sum_probs=55.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      .|.+|.|.|. |.+|...++.++.+|++|++..++.+.    .+...++|+....   +++++.     ...|+|+.++.
T Consensus       190 ~gktvGIIGl-G~IG~~vA~~l~a~G~~V~~~d~~~~~----~~~~~~~G~~~~~---~l~ell-----~~aDvV~l~~P  256 (393)
T 2nac_A          190 EAMHVGTVAA-GRIGLAVLRRLAPFDVHLHYTDRHRLP----ESVEKELNLTWHA---TREDMY-----PVCDVVTLNCP  256 (393)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTCEEEEECSSCCC----HHHHHHHTCEECS---SHHHHG-----GGCSEEEECSC
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHhCCCEEEEEcCCccc----hhhHhhcCceecC---CHHHHH-----hcCCEEEEecC
Confidence            6899999999 999999999999999999888655433    2334455654321   222211     13477776665


Q ss_pred             ch-----hH-HHHHHhcccCCEEEEEe
Q psy2960         293 GN-----SA-TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       293 ~~-----~~-~~~~~~l~~~G~~v~~g  313 (405)
                      ..     .+ ...+..|+++..++.++
T Consensus       257 lt~~t~~li~~~~l~~mk~gailIN~a  283 (393)
T 2nac_A          257 LHPETEHMINDETLKLFKRGAYIVNTA  283 (393)
T ss_dssp             CCTTTTTCBSHHHHTTSCTTEEEEECS
T ss_pred             CchHHHHHhhHHHHhhCCCCCEEEECC
Confidence            21     11 23456666666666655

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=95.27  E-value=0.034  Score=51.80  Aligned_cols=104  Identities=18%  Similarity=0.231  Sum_probs=59.4

Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcC--CcEEEEecCCcchHHHHHHHHHcC-----------CcEE-eChhhH
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLG-----------ADYV-FTEEEL  272 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G--~~v~~~~~~~~~~~~~~~~~~~lg-----------~~~v-~~~~d~  272 (405)
                      ....+++|++||-.|+ |. |..++.+++..|  .+++++-.+++..+...+.+..+|           .+.+ +...|.
T Consensus        99 ~~l~~~~g~~VLDiG~-G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~  176 (336)
T 2b25_A           99 SMMDINPGDTVLEAGS-GS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDI  176 (336)
T ss_dssp             HHHTCCTTCEEEEECC-TT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCT
T ss_pred             HhcCCCCCCEEEEeCC-Cc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECCh
Confidence            3357899999999998 43 888999999877  566666433332222223333222           1111 111222


Q ss_pred             HH-HhhhcCCCCCcEEEECCCch--hHHHHHHhcccCCEEEEEe
Q psy2960         273 RN-ISRDASIPKPKLALNCVGGN--SATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       273 ~~-i~~~t~g~g~Dvvld~~g~~--~~~~~~~~l~~~G~~v~~g  313 (405)
                      .+ ..... ...+|+|+-.....  .+..+.++|+|+|+++...
T Consensus       177 ~~~~~~~~-~~~fD~V~~~~~~~~~~l~~~~~~LkpgG~lv~~~  219 (336)
T 2b25_A          177 SGATEDIK-SLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYV  219 (336)
T ss_dssp             TCCC--------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred             HHcccccC-CCCeeEEEECCCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            22 11111 23589988655443  3456789999999999765

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=95.23  E-value=0.19  Score=47.09  Aligned_cols=136  Identities=10%  Similarity=0.050  Sum_probs=77.2

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCCc
Q psy2960         215 DVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGG  293 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~  293 (405)
                      -+|.|.|+ |.+|...+...+.. +++++++++....  ...+.+.++|...   +.+++++.+   ...+|+|+.|+..
T Consensus         6 ~~vgiiG~-G~~g~~~~~~l~~~~~~~lvav~d~~~~--~~~~~~~~~g~~~---~~~~~~~l~---~~~~D~V~i~tp~   76 (354)
T 3db2_A            6 VGVAAIGL-GRWAYVMADAYTKSEKLKLVTCYSRTED--KREKFGKRYNCAG---DATMEALLA---REDVEMVIITVPN   76 (354)
T ss_dssp             EEEEEECC-SHHHHHHHHHHTTCSSEEEEEEECSSHH--HHHHHHHHHTCCC---CSSHHHHHH---CSSCCEEEECSCT
T ss_pred             ceEEEEcc-CHHHHHHHHHHHhCCCcEEEEEECCCHH--HHHHHHHHcCCCC---cCCHHHHhc---CCCCCEEEEeCCh
Confidence            37999999 89999888777766 7888888755432  2234455667653   344444221   3468999999987


Q ss_pred             hhHH-HHHHhcccCCEEEEEeccCCCCcccCcccc----cccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcc
Q psy2960         294 NSAT-NLLRTLVSKGVMVTYGGMSREPVQIPTSAF----IFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL  368 (405)
Q Consensus       294 ~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~----~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l  368 (405)
                      ..-. .+..++..| +-+.+.++-..+.. ....+    -.+++.+.-.+...+          ...+..+.+++++|.|
T Consensus        77 ~~h~~~~~~al~~g-k~vl~EKP~~~~~~-~~~~l~~~a~~~~~~~~v~~~~R~----------~p~~~~~k~~i~~g~i  144 (354)
T 3db2_A           77 DKHAEVIEQCARSG-KHIYVEKPISVSLD-HAQRIDQVIKETGVKFLCGHSSRR----------LGALRKMKEMIDTKEI  144 (354)
T ss_dssp             TSHHHHHHHHHHTT-CEEEEESSSCSSHH-HHHHHHHHHHHHCCCEEEECGGGG----------SHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHcC-CEEEEccCCCCCHH-HHHHHHHHHHHcCCeEEEeechhc----------CHHHHHHHHHHhcCCC
Confidence            5544 455666654 55666543211100 01111    123343332222221          2336777788888887


Q ss_pred             cCC
Q psy2960         369 AAP  371 (405)
Q Consensus       369 ~~~  371 (405)
                      -..
T Consensus       145 G~i  147 (354)
T 3db2_A          145 GEV  147 (354)
T ss_dssp             CCE
T ss_pred             CCe
Confidence            543

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=95.21  E-value=0.017  Score=54.10  Aligned_cols=78  Identities=12%  Similarity=0.038  Sum_probs=44.6

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCc-chHHHHHHHHHc-CCcEE-eChhhHHHHhhhcCCCCCcEEEECC
Q psy2960         216 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRD-DIDKLKSYLKSL-GADYV-FTEEELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~-~~~~~~~~~~~l-g~~~v-~~~~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                      +|||.||+|.+|...++.+... |++|+++.++.. .....+..+... +...+ .|-.|.+.+.+.....++|+||.+.
T Consensus         2 kvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A   81 (361)
T 1kew_A            2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLA   81 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             EEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEEECC
Confidence            5999999999999999877777 789998876531 111111111110 12222 2333322222221112789999998


Q ss_pred             Cc
Q psy2960         292 GG  293 (405)
Q Consensus       292 g~  293 (405)
                      |.
T Consensus        82 ~~   83 (361)
T 1kew_A           82 AE   83 (361)
T ss_dssp             SC
T ss_pred             CC
Confidence            74

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=95.20  E-value=0.048  Score=47.49  Aligned_cols=97  Identities=15%  Similarity=0.108  Sum_probs=61.0

Q ss_pred             HhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH----cCCcEEeChhhHHH-HhhhcC
Q psy2960         206 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS----LGADYVFTEEELRN-ISRDAS  280 (405)
Q Consensus       206 ~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~----lg~~~v~~~~d~~~-i~~~t~  280 (405)
                      .....++++++||-.|+ | .|..+..+++.. .+++++-.+    +..++.+++    .+ ..-+...|... ..   .
T Consensus        63 ~~~~~~~~~~~vLdiG~-G-~G~~~~~l~~~~-~~v~~vD~~----~~~~~~a~~~~~~~~-~v~~~~~d~~~~~~---~  131 (231)
T 1vbf_A           63 LDELDLHKGQKVLEIGT-G-IGYYTALIAEIV-DKVVSVEIN----EKMYNYASKLLSYYN-NIKLILGDGTLGYE---E  131 (231)
T ss_dssp             HHHTTCCTTCEEEEECC-T-TSHHHHHHHHHS-SEEEEEESC----HHHHHHHHHHHTTCS-SEEEEESCGGGCCG---G
T ss_pred             HHhcCCCCCCEEEEEcC-C-CCHHHHHHHHHc-CEEEEEeCC----HHHHHHHHHHHhhcC-CeEEEECCcccccc---c
Confidence            34467889999999998 3 488888888874 677777433    333444443    23 11121122222 11   1


Q ss_pred             CCCCcEEEECCCchhH-HHHHHhcccCCEEEEEe
Q psy2960         281 IPKPKLALNCVGGNSA-TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       281 g~g~Dvvld~~g~~~~-~~~~~~l~~~G~~v~~g  313 (405)
                      ...+|+|+....-..+ ....+.|+++|+++..-
T Consensus       132 ~~~fD~v~~~~~~~~~~~~~~~~L~pgG~l~~~~  165 (231)
T 1vbf_A          132 EKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPI  165 (231)
T ss_dssp             GCCEEEEEESSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             CCCccEEEECCcHHHHHHHHHHHcCCCcEEEEEE
Confidence            3569999976654443 45679999999998875

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=95.18  E-value=0.056  Score=48.61  Aligned_cols=85  Identities=16%  Similarity=0.217  Sum_probs=57.9

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCCc
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGG  293 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~  293 (405)
                      |.+++|.|+ |++|.+++..+...|.+++++.++.++.+   +.+ ++|.. +...++   +      ..+|+||+|++.
T Consensus       118 ~k~vlvlGa-GGaaraia~~L~~~G~~v~V~nRt~~ka~---~la-~~~~~-~~~~~~---l------~~~DiVInaTp~  182 (269)
T 3phh_A          118 YQNALILGA-GGSAKALACELKKQGLQVSVLNRSSRGLD---FFQ-RLGCD-CFMEPP---K------SAFDLIINATSA  182 (269)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCTTHH---HHH-HHTCE-EESSCC---S------SCCSEEEECCTT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHH---HHH-HCCCe-EecHHH---h------ccCCEEEEcccC
Confidence            899999998 99999999999999987777777765532   233 56643 322222   1      168999999864


Q ss_pred             h-----hH-HHHH-HhcccCCEEEEEe
Q psy2960         294 N-----SA-TNLL-RTLVSKGVMVTYG  313 (405)
Q Consensus       294 ~-----~~-~~~~-~~l~~~G~~v~~g  313 (405)
                      .     .+ ...+ ..++++..++.+.
T Consensus       183 Gm~~~~~l~~~~l~~~l~~~~~v~D~v  209 (269)
T 3phh_A          183 SLHNELPLNKEVLKGYFKEGKLAYDLA  209 (269)
T ss_dssp             CCCCSCSSCHHHHHHHHHHCSEEEESC
T ss_pred             CCCCCCCCChHHHHhhCCCCCEEEEeC
Confidence            2     12 2222 3677888887775

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=95.18  E-value=0.02  Score=53.84  Aligned_cols=36  Identities=17%  Similarity=0.241  Sum_probs=30.1

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD  249 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~  249 (405)
                      +.+|||.||+|.+|...++.+...|++|+++.++.+
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   36 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRAS   36 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCc
Confidence            368999999999999999999889999999886643

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=95.18  E-value=0.035  Score=50.23  Aligned_cols=88  Identities=9%  Similarity=0.023  Sum_probs=53.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHcCC-cEEeChhhHHHHhhhcCCCCCcEEEEC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGA-DYVFTEEELRNISRDASIPKPKLALNC  290 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~lg~-~~v~~~~d~~~i~~~t~g~g~Dvvld~  290 (405)
                      .|.+++|.|+ |++|.+++..+...|+ +++++.++.++.       .++-. -.....++..+.     -..+|+||+|
T Consensus       116 ~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a-------~~la~~~~~~~~~~~~~~-----~~~aDiVIna  182 (277)
T 3don_A          116 EDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRF-------NNWSLNINKINLSHAESH-----LDEFDIIINT  182 (277)
T ss_dssp             GGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGG-------TTCCSCCEEECHHHHHHT-----GGGCSEEEEC
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHH-------HHHHHhcccccHhhHHHH-----hcCCCEEEEC
Confidence            5889999998 8999999999999999 677766654431       12211 122333333331     1247999999


Q ss_pred             CCchhHHH-----HHHhcccCCEEEEEe
Q psy2960         291 VGGNSATN-----LLRTLVSKGVMVTYG  313 (405)
Q Consensus       291 ~g~~~~~~-----~~~~l~~~G~~v~~g  313 (405)
                      ++......     ....++++..++.+.
T Consensus       183 Tp~Gm~~~~~~~l~~~~l~~~~~V~D~v  210 (277)
T 3don_A          183 TPAGMNGNTDSVISLNRLASHTLVSDIV  210 (277)
T ss_dssp             CC-------CCSSCCTTCCSSCEEEESC
T ss_pred             ccCCCCCCCcCCCCHHHcCCCCEEEEec
Confidence            87532211     134567777777765

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=95.16  E-value=0.077  Score=44.40  Aligned_cols=102  Identities=16%  Similarity=0.046  Sum_probs=61.6

Q ss_pred             HhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc---EEeChhhHHHHhhhcCCC
Q psy2960         206 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD---YVFTEEELRNISRDASIP  282 (405)
Q Consensus       206 ~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~---~v~~~~d~~~i~~~t~g~  282 (405)
                      ......+++++||-.|+  |.|..+..+++. +.+++++--+.+..+...+.+...+..   .-+...|...   .....
T Consensus        45 ~~~~~~~~~~~vLdiG~--G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~---~~~~~  118 (194)
T 1dus_A           45 VENVVVDKDDDILDLGC--GYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE---NVKDR  118 (194)
T ss_dssp             HHHCCCCTTCEEEEETC--TTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT---TCTTS
T ss_pred             HHHcccCCCCeEEEeCC--CCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc---ccccC
Confidence            34457779999999998  458888888887 888887754433333333334444533   1121222221   11145


Q ss_pred             CCcEEEECCC----c----hhHHHHHHhcccCCEEEEEe
Q psy2960         283 KPKLALNCVG----G----NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       283 g~Dvvld~~g----~----~~~~~~~~~l~~~G~~v~~g  313 (405)
                      .+|+|+-...    .    ..+..+.+.|+++|+++...
T Consensus       119 ~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~  157 (194)
T 1dus_A          119 KYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVI  157 (194)
T ss_dssp             CEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEE
Confidence            6899987543    1    22344568899999998865

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=95.15  E-value=0.048  Score=47.31  Aligned_cols=102  Identities=14%  Similarity=0.102  Sum_probs=61.5

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHcCCcE-E-eChhhHHH-HhhhcCC---
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADY-V-FTEEELRN-ISRDASI---  281 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~--G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v-~~~~d~~~-i~~~t~g---  281 (405)
                      ...++.+||-.|+  |.|..++.+|+.+  +.+++++-.+++..+...+.+...|... + +-..|..+ +......   
T Consensus        61 ~~~~~~~vLdiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  138 (225)
T 3tr6_A           61 KLMQAKKVIDIGT--FTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQA  138 (225)
T ss_dssp             HHHTCSEEEEECC--TTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCT
T ss_pred             HhhCCCEEEEeCC--cchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCC
Confidence            3457889999998  4588999999987  4667666544433333344455556431 1 21222222 2222211   


Q ss_pred             CCCcEEEECCCch----hHHHHHHhcccCCEEEEEe
Q psy2960         282 PKPKLALNCVGGN----SATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       282 ~g~Dvvld~~g~~----~~~~~~~~l~~~G~~v~~g  313 (405)
                      ..+|+|+-.....    .+..+.+.|+|+|.++.-.
T Consensus       139 ~~fD~v~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  174 (225)
T 3tr6_A          139 WQYDLIYIDADKANTDLYYEESLKLLREGGLIAVDN  174 (225)
T ss_dssp             TCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCccEEEECCCHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            5799998544432    2345678999999998643

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=95.14  E-value=0.04  Score=48.31  Aligned_cols=102  Identities=17%  Similarity=0.138  Sum_probs=60.0

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHcCCcE-E-eChhhHHH-HhhhcC-C--
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADY-V-FTEEELRN-ISRDAS-I--  281 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~--G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v-~~~~d~~~-i~~~t~-g--  281 (405)
                      ...++++||-.|+  |.|..++.+|+.+  +++++++-.+++..+...+.+...|... + +...+..+ +.++.. .  
T Consensus        69 ~~~~~~~vLdiG~--G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~  146 (232)
T 3cbg_A           69 SLTGAKQVLEIGV--FRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPL  146 (232)
T ss_dssp             HHHTCCEEEEECC--TTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSC
T ss_pred             HhcCCCEEEEecC--CCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCC
Confidence            3457789999998  4899999999987  4566666433332222233334445421 1 21223222 333321 1  


Q ss_pred             CCCcEEEECCCch----hHHHHHHhcccCCEEEEEe
Q psy2960         282 PKPKLALNCVGGN----SATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       282 ~g~Dvvld~~g~~----~~~~~~~~l~~~G~~v~~g  313 (405)
                      ..+|+|+-.....    .+..+.++|+|+|.++.-.
T Consensus       147 ~~fD~V~~d~~~~~~~~~l~~~~~~LkpgG~lv~~~  182 (232)
T 3cbg_A          147 PEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDN  182 (232)
T ss_dssp             CCEEEEEECSCGGGHHHHHHHHHHTEEEEEEEEEEC
T ss_pred             CCcCEEEECCCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence            5799998443322    2445679999999998753

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=95.13  E-value=0.036  Score=50.71  Aligned_cols=74  Identities=11%  Similarity=0.134  Sum_probs=45.2

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEEECCCc
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALNCVGG  293 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld~~g~  293 (405)
                      +|||.||+|.+|...++.+...|++|+++.+..+...   +.+ .-+...+ .|-.+.+.+.+.....++|+|+.+.+.
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~---~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~   76 (311)
T 2p5y_A            2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKR---ENV-PKGVPFFRVDLRDKEGVERAFREFRPTHVSHQAAQ   76 (311)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCG---GGS-CTTCCEECCCTTCHHHHHHHHHHHCCSEEEECCSC
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCch---hhc-ccCeEEEECCCCCHHHHHHHHHhcCCCEEEECccc
Confidence            6999999999999999998889999998876332211   101 0122322 233332222221111268999998874

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=95.10  E-value=0.054  Score=50.15  Aligned_cols=88  Identities=13%  Similarity=0.114  Sum_probs=59.8

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEec-CCcchHHHHHHHHHcCCcEEeChhhHHH-HhhhcCCCCCcEEEE
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVR-NRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALN  289 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~-~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~Dvvld  289 (405)
                      -.|.+|.|.|. |.+|...++.++..|++|++..+ +.+.     +.+.++|+.. .  .+..+ +.      ..|+|+.
T Consensus       144 l~g~~vgIIG~-G~IG~~~A~~l~~~G~~V~~~d~~~~~~-----~~~~~~g~~~-~--~~l~ell~------~aDvVil  208 (320)
T 1gdh_A          144 LDNKTLGIYGF-GSIGQALAKRAQGFDMDIDYFDTHRASS-----SDEASYQATF-H--DSLDSLLS------VSQFFSL  208 (320)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSCCCH-----HHHHHHTCEE-C--SSHHHHHH------HCSEEEE
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCcCh-----hhhhhcCcEE-c--CCHHHHHh------hCCEEEE
Confidence            36889999999 99999999999999999988875 4432     2344567642 2  12333 32      3588888


Q ss_pred             CCCchh-----H-HHHHHhcccCCEEEEEec
Q psy2960         290 CVGGNS-----A-TNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       290 ~~g~~~-----~-~~~~~~l~~~G~~v~~g~  314 (405)
                      ++....     + ...+..++++..++.++.
T Consensus       209 ~~p~~~~t~~~i~~~~l~~mk~gailIn~ar  239 (320)
T 1gdh_A          209 NAPSTPETRYFFNKATIKSLPQGAIVVNTAR  239 (320)
T ss_dssp             CCCCCTTTTTCBSHHHHTTSCTTEEEEECSC
T ss_pred             eccCchHHHhhcCHHHHhhCCCCcEEEECCC
Confidence            876321     1 235677888877777763

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.10  E-value=0.26  Score=38.73  Aligned_cols=77  Identities=12%  Similarity=0.185  Sum_probs=49.8

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHH-HcCCcEEe-ChhhHHHHhhhcCCCCCcEEEECC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGADYVF-TEEELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~-~lg~~~v~-~~~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                      +.+|+|.|+ |.+|...++.+...|.+++++.++.    ++.+.+. ..|...+. +..+...+.+. .-.++|+|+.|+
T Consensus         4 ~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~----~~~~~~~~~~~~~~~~~d~~~~~~l~~~-~~~~~d~vi~~~   77 (140)
T 1lss_A            4 GMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDK----DICKKASAEIDALVINGDCTKIKTLEDA-GIEDADMYIAVT   77 (140)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCH----HHHHHHHHHCSSEEEESCTTSHHHHHHT-TTTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCH----HHHHHHHHhcCcEEEEcCCCCHHHHHHc-CcccCCEEEEee
Confidence            458999998 9999999999999999888776443    2233333 45654332 33332222221 234689999999


Q ss_pred             CchhH
Q psy2960         292 GGNSA  296 (405)
Q Consensus       292 g~~~~  296 (405)
                      +....
T Consensus        78 ~~~~~   82 (140)
T 1lss_A           78 GKEEV   82 (140)
T ss_dssp             SCHHH
T ss_pred             CCchH
Confidence            87644

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=95.08  E-value=0.094  Score=48.74  Aligned_cols=86  Identities=9%  Similarity=0.179  Sum_probs=57.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH-HhhhcCCCCCcEEEECC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCV  291 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~Dvvld~~  291 (405)
                      .|.+|.|.|. |.+|...++.++..|.+|++..++.+..    +.+.+.|....    +..+ +.      ..|+|+.++
T Consensus       154 ~g~~vgIIG~-G~iG~~iA~~l~~~G~~V~~~d~~~~~~----~~~~~~g~~~~----~l~e~l~------~aDvVi~~v  218 (330)
T 2gcg_A          154 TQSTVGIIGL-GRIGQAIARRLKPFGVQRFLYTGRQPRP----EEAAEFQAEFV----STPELAA------QSDFIVVAC  218 (330)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTCCEEEEESSSCCH----HHHHTTTCEEC----CHHHHHH------HCSEEEECC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCcch----hHHHhcCceeC----CHHHHHh------hCCEEEEeC
Confidence            5789999999 9999999999999999998887654432    23345555332    2233 22      248888877


Q ss_pred             Cchh-----H-HHHHHhcccCCEEEEEe
Q psy2960         292 GGNS-----A-TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       292 g~~~-----~-~~~~~~l~~~G~~v~~g  313 (405)
                      ....     + ...+..++++..++.++
T Consensus       219 p~~~~t~~~i~~~~~~~mk~gailIn~s  246 (330)
T 2gcg_A          219 SLTPATEGLCNKDFFQKMKETAVFINIS  246 (330)
T ss_dssp             CCCTTTTTCBSHHHHHHSCTTCEEEECS
T ss_pred             CCChHHHHhhCHHHHhcCCCCcEEEECC
Confidence            5421     1 23456777777776655

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=95.07  E-value=0.069  Score=45.80  Aligned_cols=96  Identities=9%  Similarity=-0.026  Sum_probs=61.9

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEE
Q psy2960         209 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLA  287 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvv  287 (405)
                      ..+.++.+||-.|+  |.|..+..+++. |++++++-    ..+..++.+++.+...+ +-..|.   .+......+|+|
T Consensus        42 ~~~~~~~~vLdiG~--G~G~~~~~l~~~-~~~v~~~D----~s~~~~~~a~~~~~~~~~~~~~d~---~~~~~~~~~D~v  111 (218)
T 3ou2_A           42 RAGNIRGDVLELAS--GTGYWTRHLSGL-ADRVTALD----GSAEMIAEAGRHGLDNVEFRQQDL---FDWTPDRQWDAV  111 (218)
T ss_dssp             TTTTSCSEEEEESC--TTSHHHHHHHHH-SSEEEEEE----SCHHHHHHHGGGCCTTEEEEECCT---TSCCCSSCEEEE
T ss_pred             hcCCCCCeEEEECC--CCCHHHHHHHhc-CCeEEEEe----CCHHHHHHHHhcCCCCeEEEeccc---ccCCCCCceeEE
Confidence            45788999999998  348888888887 88887774    33445667766553222 111222   112235679999


Q ss_pred             EECCCc---------hhHHHHHHhcccCCEEEEEec
Q psy2960         288 LNCVGG---------NSATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       288 ld~~g~---------~~~~~~~~~l~~~G~~v~~g~  314 (405)
                      +....-         ..+....+.|+|+|+++....
T Consensus       112 ~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  147 (218)
T 3ou2_A          112 FFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV  147 (218)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            965431         123445789999999988763

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=95.06  E-value=0.061  Score=46.99  Aligned_cols=98  Identities=13%  Similarity=0.026  Sum_probs=58.0

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHcC-CcEEEEecCCcchHHHHHHHHHcCC--cEE-eChhhHHHHhh-hcCCCC
Q psy2960         209 NSLSPGDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGA--DYV-FTEEELRNISR-DASIPK  283 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~aiqla~~~G-~~v~~~~~~~~~~~~~~~~~~~lg~--~~v-~~~~d~~~i~~-~t~g~g  283 (405)
                      ..++++++||-.|+ | .|..+..+++..| .+++++--+    +..++.+++.-.  +.+ +-..|...... ..-...
T Consensus        70 ~~~~~~~~VLDlGc-G-~G~~~~~la~~~~~~~v~gvD~s----~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~  143 (230)
T 1fbn_A           70 MPIKRDSKILYLGA-S-AGTTPSHVADIADKGIVYAIEYA----PRIMRELLDACAERENIIPILGDANKPQEYANIVEK  143 (230)
T ss_dssp             CCCCTTCEEEEESC-C-SSHHHHHHHHHTTTSEEEEEESC----HHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCC
T ss_pred             cCCCCCCEEEEEcc-c-CCHHHHHHHHHcCCcEEEEEECC----HHHHHHHHHHhhcCCCeEEEECCCCCcccccccCcc
Confidence            56789999999998 3 4889999999987 466666433    333444433211  111 11111111000 111246


Q ss_pred             CcEEEECCCch----h-HHHHHHhcccCCEEEEE
Q psy2960         284 PKLALNCVGGN----S-ATNLLRTLVSKGVMVTY  312 (405)
Q Consensus       284 ~Dvvld~~g~~----~-~~~~~~~l~~~G~~v~~  312 (405)
                      +|+|+......    . +..+.+.|+|+|+++..
T Consensus       144 ~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          144 VDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEEEecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            89999655443    2 44567899999999886

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=95.04  E-value=0.079  Score=45.84  Aligned_cols=102  Identities=11%  Similarity=0.089  Sum_probs=60.7

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHcCCcE-E-eChhhHHH-Hhhhc--CCC
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADY-V-FTEEELRN-ISRDA--SIP  282 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~--G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v-~~~~d~~~-i~~~t--~g~  282 (405)
                      ...++.+||-.|+  |.|..++.+|+.+  +++++++-.+.+..+...+.+...|... + +-..|..+ +....  ...
T Consensus        55 ~~~~~~~vLdiG~--G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~  132 (223)
T 3duw_A           55 QIQGARNILEIGT--LGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYE  132 (223)
T ss_dssp             HHHTCSEEEEECC--TTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCC
T ss_pred             HhhCCCEEEEecC--CccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCC
Confidence            4467899999998  4688999999987  5677776544333333344445556421 1 21222222 22211  114


Q ss_pred             CCcEEEECCCch----hHHHHHHhcccCCEEEEEe
Q psy2960         283 KPKLALNCVGGN----SATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       283 g~Dvvld~~g~~----~~~~~~~~l~~~G~~v~~g  313 (405)
                      .+|+|+-.....    .+..+.+.|+|+|.++.-.
T Consensus       133 ~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~  167 (223)
T 3duw_A          133 PFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDN  167 (223)
T ss_dssp             CCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEES
T ss_pred             CcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            699998544333    2345678999999887643

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=95.03  E-value=0.036  Score=49.82  Aligned_cols=97  Identities=11%  Similarity=0.142  Sum_probs=65.0

Q ss_pred             ccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHcCCcEEeCh
Q psy2960         192 SGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVFTE  269 (405)
Q Consensus       192 a~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~--G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~  269 (405)
                      ..+||....+...+....---.|.+++|.|++.-+|..+++++...  |++|+++-+..                     
T Consensus       136 ~~~PcTp~gi~~ll~~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t---------------------  194 (281)
T 2c2x_A          136 APLPCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT---------------------  194 (281)
T ss_dssp             CCCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC---------------------
T ss_pred             CCCCChHHHHHHHHHHcCCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch---------------------
Confidence            3456555555666655432347999999999656899999999999  88877663221                     


Q ss_pred             hhHHHHhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEecc
Q psy2960         270 EELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       270 ~d~~~i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~  315 (405)
                      ++..+   .+  +..|+||.++|.+.+ ---++++++-.++.+|..
T Consensus       195 ~~L~~---~~--~~ADIVI~Avg~p~~-I~~~~vk~GavVIDVgi~  234 (281)
T 2c2x_A          195 RDLPA---LT--RQADIVVAAVGVAHL-LTADMVRPGAAVIDVGVS  234 (281)
T ss_dssp             SCHHH---HH--TTCSEEEECSCCTTC-BCGGGSCTTCEEEECCEE
T ss_pred             hHHHH---HH--hhCCEEEECCCCCcc-cCHHHcCCCcEEEEccCC
Confidence            12222   11  246999999997754 113557888888888743

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=95.02  E-value=0.093  Score=48.50  Aligned_cols=76  Identities=7%  Similarity=-0.025  Sum_probs=46.0

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHc---C---CcEEEEecCCcc-hHHHHHHHHH-cCCcEE-eChhhHHHHhhhcCCCCCcE
Q psy2960         216 VVIQNGANSACGQNVIQIARHW---G---LKTINIVRNRDD-IDKLKSYLKS-LGADYV-FTEEELRNISRDASIPKPKL  286 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~---G---~~v~~~~~~~~~-~~~~~~~~~~-lg~~~v-~~~~d~~~i~~~t~g~g~Dv  286 (405)
                      +|||.||+|.+|...++.+...   |   .+|+++.++... ....++.+.. -+...+ .|..|...+.+..  .++|+
T Consensus         2 ~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--~~~d~   79 (337)
T 1r6d_A            2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLAREL--RGVDA   79 (337)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHT--TTCCE
T ss_pred             eEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHh--cCCCE
Confidence            6999999999999999888775   7   899988764311 1111111111 111212 2333333344443  57999


Q ss_pred             EEECCCc
Q psy2960         287 ALNCVGG  293 (405)
Q Consensus       287 vld~~g~  293 (405)
                      ||.+.+.
T Consensus        80 Vih~A~~   86 (337)
T 1r6d_A           80 IVHFAAE   86 (337)
T ss_dssp             EEECCSC
T ss_pred             EEECCCc
Confidence            9999874

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=94.99  E-value=0.039  Score=48.10  Aligned_cols=101  Identities=9%  Similarity=0.085  Sum_probs=60.4

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc-EEeChhhHHHHhhhcCCCCCcEE
Q psy2960         209 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YVFTEEELRNISRDASIPKPKLA  287 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~-~v~~~~d~~~i~~~t~g~g~Dvv  287 (405)
                      ..+++|++||=.|+ |..|..++.+++..+.+++++--+.+..+...+.+...|.. .++. .|........ ...+|+|
T Consensus        51 ~~~~~~~~vLDlG~-G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~-~d~~~~~~~~-~~~fD~I  127 (230)
T 3evz_A           51 TFLRGGEVALEIGT-GHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVK-SNGGIIKGVV-EGTFDVI  127 (230)
T ss_dssp             TTCCSSCEEEEECC-TTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEE-CSSCSSTTTC-CSCEEEE
T ss_pred             hhcCCCCEEEEcCC-CHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEe-CCchhhhhcc-cCceeEE
Confidence            45789999999998 43678888888877888888865444333333444455531 2221 1110011111 3578999


Q ss_pred             EECCC--------------------------chhHHHHHHhcccCCEEEEE
Q psy2960         288 LNCVG--------------------------GNSATNLLRTLVSKGVMVTY  312 (405)
Q Consensus       288 ld~~g--------------------------~~~~~~~~~~l~~~G~~v~~  312 (405)
                      +-...                          ...+..+.+.|+++|+++.+
T Consensus       128 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  178 (230)
T 3evz_A          128 FSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALY  178 (230)
T ss_dssp             EECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             EECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEE
Confidence            85411                          12334566889999999875

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=94.97  E-value=0.073  Score=49.14  Aligned_cols=78  Identities=13%  Similarity=0.014  Sum_probs=46.2

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcC--CcEEEEecCCc-chHHHHHHHHH-cCCcEE-eChhhHHHHhhhcCCCCCcEEE
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRD-DIDKLKSYLKS-LGADYV-FTEEELRNISRDASIPKPKLAL  288 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G--~~v~~~~~~~~-~~~~~~~~~~~-lg~~~v-~~~~d~~~i~~~t~g~g~Dvvl  288 (405)
                      +.+|||.||+|.+|...+..+...|  ++|+++.+... ...+.++.+.. -+...+ .|-.|...+.+..  .++|+||
T Consensus         3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~--~~~d~vi   80 (336)
T 2hun_A            3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELV--RKVDGVV   80 (336)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHH--HTCSEEE
T ss_pred             CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHh--hCCCEEE
Confidence            4579999999999999998888776  88888876431 11111111111 011112 2333333233332  4689999


Q ss_pred             ECCCc
Q psy2960         289 NCVGG  293 (405)
Q Consensus       289 d~~g~  293 (405)
                      ++.|.
T Consensus        81 h~A~~   85 (336)
T 2hun_A           81 HLAAE   85 (336)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            99984

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=94.97  E-value=0.19  Score=44.53  Aligned_cols=101  Identities=15%  Similarity=0.126  Sum_probs=61.5

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHcCCc-EE-eChhhHHH-Hhhhc----C
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGAD-YV-FTEEELRN-ISRDA----S  280 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~--G~~v~~~~~~~~~~~~~~~~~~~lg~~-~v-~~~~d~~~-i~~~t----~  280 (405)
                      ...++++||-.|+  |.|..++.+|+.+  +++++++-.+++..+...+.++..|.+ .+ +-..|..+ +....    .
T Consensus        76 ~~~~~~~VLeiG~--G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~  153 (247)
T 1sui_A           76 KLINAKNTMEIGV--YTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKN  153 (247)
T ss_dssp             HHTTCCEEEEECC--GGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGG
T ss_pred             HhhCcCEEEEeCC--CcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCC
Confidence            3456789999998  6789999999987  567777755544434444555556652 12 11122222 22221    1


Q ss_pred             CCCCcEEEECCCc----hhHHHHHHhcccCCEEEEE
Q psy2960         281 IPKPKLALNCVGG----NSATNLLRTLVSKGVMVTY  312 (405)
Q Consensus       281 g~g~Dvvld~~g~----~~~~~~~~~l~~~G~~v~~  312 (405)
                      ...||+|+-....    ..+..+.+.|++||.++.-
T Consensus       154 ~~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~d  189 (247)
T 1sui_A          154 HGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYD  189 (247)
T ss_dssp             TTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             CCCEEEEEEcCchHHHHHHHHHHHHhCCCCeEEEEe
Confidence            3569998854432    2334567999999998864

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=94.97  E-value=0.033  Score=52.42  Aligned_cols=76  Identities=13%  Similarity=0.086  Sum_probs=49.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEE-eChh-hHHHHhhhcCCCCCcEEEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEE-ELRNISRDASIPKPKLALN  289 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~-d~~~i~~~t~g~g~Dvvld  289 (405)
                      .+.+|||.||+|.+|...++.+... |.+|+++.++.+.....   ....+...+ .|.. +...+.+..  .++|+||.
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~---~~~~~v~~~~~Dl~~d~~~~~~~~--~~~d~Vih   97 (372)
T 3slg_A           23 KAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDL---VKHERMHFFEGDITINKEWVEYHV--KKCDVILP   97 (372)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGG---GGSTTEEEEECCTTTCHHHHHHHH--HHCSEEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhh---ccCCCeEEEeCccCCCHHHHHHHh--ccCCEEEE
Confidence            3578999999999999999988887 99999999876542111   111233333 2333 322233222  26899999


Q ss_pred             CCCc
Q psy2960         290 CVGG  293 (405)
Q Consensus       290 ~~g~  293 (405)
                      +.+.
T Consensus        98 ~A~~  101 (372)
T 3slg_A           98 LVAI  101 (372)
T ss_dssp             CBCC
T ss_pred             cCcc
Confidence            8873

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=94.93  E-value=0.081  Score=47.30  Aligned_cols=105  Identities=12%  Similarity=0.210  Sum_probs=64.9

Q ss_pred             HHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc--EEeChhhHHHHhhhcCCC
Q psy2960         205 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YVFTEEELRNISRDASIP  282 (405)
Q Consensus       205 l~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~--~v~~~~d~~~i~~~t~g~  282 (405)
                      +....+++++++||-.|+  |.|..+..+++..|++++++.-+.+..+...+.+...|..  .-+-..|...+.  ....
T Consensus        53 l~~~~~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~  128 (273)
T 3bus_A           53 MIALLDVRSGDRVLDVGC--GIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP--FEDA  128 (273)
T ss_dssp             HHHHSCCCTTCEEEEESC--TTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--SCTT
T ss_pred             HHHhcCCCCCCEEEEeCC--CCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCC--CCCC
Confidence            345567889999999998  4588899999988999988875544433333444444432  111111211110  1134


Q ss_pred             CCcEEEECCC-----c--hhHHHHHHhcccCCEEEEEe
Q psy2960         283 KPKLALNCVG-----G--NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       283 g~Dvvld~~g-----~--~~~~~~~~~l~~~G~~v~~g  313 (405)
                      .+|+|+..-.     .  ..+....+.|+|+|+++...
T Consensus       129 ~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~  166 (273)
T 3bus_A          129 SFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIAD  166 (273)
T ss_dssp             CEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEE
Confidence            6899985322     1  22345678899999998765

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=94.92  E-value=0.051  Score=53.30  Aligned_cols=40  Identities=20%  Similarity=0.191  Sum_probs=34.5

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHc---CCcEEEEecCCcc
Q psy2960         211 LSPGDVVIQNGANSACGQNVIQIARHW---GLKTINIVRNRDD  250 (405)
Q Consensus       211 ~~~g~~VLI~ga~G~vG~~aiqla~~~---G~~v~~~~~~~~~  250 (405)
                      ...+.+|||.||+|.+|...++.+...   |.+|++++++.+.
T Consensus        70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~  112 (478)
T 4dqv_A           70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESD  112 (478)
T ss_dssp             CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence            356889999999999999999877777   8999999987654

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=94.92  E-value=0.024  Score=52.35  Aligned_cols=73  Identities=8%  Similarity=0.128  Sum_probs=47.5

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc--CCcEE-eChhhHHHHhhhcCCCCCcEEEECC
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL--GADYV-FTEEELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l--g~~~v-~~~~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                      .+|||.||+|.+|...++.+...|.+|+++.++.....      ..+  +...+ .|-.+.+.+.+.....++|+||.+.
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a   75 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHE------DAITEGAKFYNGDLRDKAFLRDVFTQENIEAVMHFA   75 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCG------GGSCTTSEEEECCTTCHHHHHHHHHHSCEEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCch------hhcCCCcEEEECCCCCHHHHHHHHhhcCCCEEEECC
Confidence            47999999999999999999999999999886543321      112  23222 2333322222221113789999998


Q ss_pred             Cc
Q psy2960         292 GG  293 (405)
Q Consensus       292 g~  293 (405)
                      +.
T Consensus        76 ~~   77 (330)
T 2c20_A           76 AD   77 (330)
T ss_dssp             CC
T ss_pred             cc
Confidence            73

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=94.92  E-value=0.054  Score=49.36  Aligned_cols=74  Identities=11%  Similarity=0.057  Sum_probs=46.3

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcC-CcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCC---CCCcEEEECC
Q psy2960         216 VVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASI---PKPKLALNCV  291 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G-~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g---~g~Dvvld~~  291 (405)
                      +|||.||+|.+|...++.+...| .+|+++.++.+...  ........  ...|..+...+.+...+   .++|+||.+.
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~~~~--~~~d~~~~~~~~~~~~~~~~~~~d~vi~~a   76 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNLVDLN--IADYMDKEDFLIQIMAGEEFGDVEAIFHEG   76 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG--GHHHHTSC--CSEEEEHHHHHHHHHTTCCCSSCCEEEECC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCch--hhhcCcce--eccccccHHHHHHHHhccccCCCcEEEECc
Confidence            48999999999999999998899 89998887654321  11222221  11222222223333222   2689999998


Q ss_pred             Cc
Q psy2960         292 GG  293 (405)
Q Consensus       292 g~  293 (405)
                      +.
T Consensus        77 ~~   78 (310)
T 1eq2_A           77 AC   78 (310)
T ss_dssp             SC
T ss_pred             cc
Confidence            73

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=94.92  E-value=0.036  Score=47.37  Aligned_cols=70  Identities=14%  Similarity=0.200  Sum_probs=43.3

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe--Chhh---HHH-HhhhcCCCCCcEEE
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEEE---LRN-ISRDASIPKPKLAL  288 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~--~~~d---~~~-i~~~t~g~g~Dvvl  288 (405)
                      .+|||.|++|++|...++.+...  +|+++.++.++.   .+...+++. .++  |-.|   ... +.+   ..++|+++
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~---~~~~~~~~~-~~~~~D~~~~~~~~~~~~~---~~~id~vi   71 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGAL---AELAREVGA-RALPADLADELEAKALLEE---AGPLDLLV   71 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHH---HHHHHHHTC-EECCCCTTSHHHHHHHHHH---HCSEEEEE
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHH---HHHHHhccC-cEEEeeCCCHHHHHHHHHh---cCCCCEEE
Confidence            36999999999999888776655  777776654322   222233333 332  3233   333 332   24789999


Q ss_pred             ECCCc
Q psy2960         289 NCVGG  293 (405)
Q Consensus       289 d~~g~  293 (405)
                      ++.|.
T Consensus        72 ~~ag~   76 (207)
T 2yut_A           72 HAVGK   76 (207)
T ss_dssp             ECCCC
T ss_pred             ECCCc
Confidence            99873

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=94.92  E-value=0.027  Score=51.78  Aligned_cols=33  Identities=18%  Similarity=0.179  Sum_probs=30.4

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEec
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVR  246 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~  246 (405)
                      |.+|||.||+|.+|...++.+...|++|+++++
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r   33 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIR   33 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECC
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEe
Confidence            578999999999999999999899999998886

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=94.90  E-value=0.086  Score=50.93  Aligned_cols=103  Identities=15%  Similarity=0.142  Sum_probs=64.6

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHcC-CcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEE
Q psy2960         209 NSLSPGDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLA  287 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~aiqla~~~G-~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvv  287 (405)
                      ...++|++||=.|+ | .|..+.+++...+ .+++++-.+....+...+.+..+|....+-..|.........+..+|.|
T Consensus       242 l~~~~g~~VLDlga-G-~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~V  319 (429)
T 1sqg_A          242 LAPQNGEHILDLCA-A-PGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRI  319 (429)
T ss_dssp             HCCCTTCEEEEESC-T-TCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEE
T ss_pred             cCCCCcCeEEEECC-C-chHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEE
Confidence            46789999999988 3 3788888888875 5777776555555555566666675322212222211111123579998


Q ss_pred             EE---CCCc--------------------------hhHHHHHHhcccCCEEEEEe
Q psy2960         288 LN---CVGG--------------------------NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       288 ld---~~g~--------------------------~~~~~~~~~l~~~G~~v~~g  313 (405)
                      +-   |+|.                          ..+..++++|++||+++...
T Consensus       320 l~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvyst  374 (429)
T 1sqg_A          320 LLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT  374 (429)
T ss_dssp             EEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            85   5552                          22345678899999998764

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=94.89  E-value=0.057  Score=50.61  Aligned_cols=86  Identities=16%  Similarity=0.145  Sum_probs=61.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH-HhhhcCCCCCcEEEECC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCV  291 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~Dvvld~~  291 (405)
                      .|.+|.|.|. |.+|...++.++.+|++|++..++.     ..+.+.+.|+..+   .++++ +.      ..|+|+-++
T Consensus       159 ~g~tvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-----~~~~~~~~g~~~~---~~l~ell~------~aDiV~l~~  223 (352)
T 3gg9_A          159 KGQTLGIFGY-GKIGQLVAGYGRAFGMNVLVWGREN-----SKERARADGFAVA---ESKDALFE------QSDVLSVHL  223 (352)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSHH-----HHHHHHHTTCEEC---SSHHHHHH------HCSEEEECC
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHhCCCEEEEECCCC-----CHHHHHhcCceEe---CCHHHHHh------hCCEEEEec
Confidence            5889999999 9999999999999999998885332     2344567777533   12333 32      248888887


Q ss_pred             Cch-h----H-HHHHHhcccCCEEEEEe
Q psy2960         292 GGN-S----A-TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       292 g~~-~----~-~~~~~~l~~~G~~v~~g  313 (405)
                      ... .    + ...+..|+++..++.++
T Consensus       224 Plt~~t~~li~~~~l~~mk~gailIN~a  251 (352)
T 3gg9_A          224 RLNDETRSIITVADLTRMKPTALFVNTS  251 (352)
T ss_dssp             CCSTTTTTCBCHHHHTTSCTTCEEEECS
T ss_pred             cCcHHHHHhhCHHHHhhCCCCcEEEECC
Confidence            532 1    1 24578888999888887

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=94.87  E-value=0.025  Score=53.05  Aligned_cols=75  Identities=12%  Similarity=0.066  Sum_probs=48.9

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcC-----CcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCC-CcE
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWG-----LKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPK-PKL  286 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G-----~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g-~Dv  286 (405)
                      |.+|||.||+|.+|...++.+...|     .+|++++++.+...     ....+...+ .|..|.+.+.+...+.+ +|+
T Consensus         1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~-----~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~d~   75 (364)
T 2v6g_A            1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW-----HEDNPINYVQCDISDPDDSQAKLSPLTDVTH   75 (364)
T ss_dssp             CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC-----CCSSCCEEEECCTTSHHHHHHHHTTCTTCCE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc-----cccCceEEEEeecCCHHHHHHHHhcCCCCCE
Confidence            4589999999999999999888889     89999987654321     111123222 23333333333333333 999


Q ss_pred             EEECCCc
Q psy2960         287 ALNCVGG  293 (405)
Q Consensus       287 vld~~g~  293 (405)
                      ||.+.+.
T Consensus        76 vih~a~~   82 (364)
T 2v6g_A           76 VFYVTWA   82 (364)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999873

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=94.83  E-value=0.03  Score=53.94  Aligned_cols=38  Identities=16%  Similarity=0.281  Sum_probs=33.7

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD  249 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~  249 (405)
                      .++.+|||.||+|.+|...+..+...|++|++++++.+
T Consensus        67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~  104 (427)
T 4f6c_A           67 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADN  104 (427)
T ss_dssp             CCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSS
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCC
Confidence            45679999999999999999888888999999998876

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=94.83  E-value=0.069  Score=48.50  Aligned_cols=101  Identities=14%  Similarity=0.088  Sum_probs=63.3

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc--EEeChhhHHHHhhhcCCCCCcEE
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YVFTEEELRNISRDASIPKPKLA  287 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~--~v~~~~d~~~i~~~t~g~g~Dvv  287 (405)
                      .+.++.+||-.|+  |.|..+..+++..|++++++--+.+..+...+.+...|..  .-+...|+..+.  .....+|+|
T Consensus        79 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~fD~v  154 (297)
T 2o57_A           79 VLQRQAKGLDLGA--GYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP--CEDNSYDFI  154 (297)
T ss_dssp             CCCTTCEEEEETC--TTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS--SCTTCEEEE
T ss_pred             CCCCCCEEEEeCC--CCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC--CCCCCEeEE
Confidence            7889999999998  4688899999988998888865544333333333344431  111111211110  113468999


Q ss_pred             EECCCc-------hhHHHHHHhcccCCEEEEEec
Q psy2960         288 LNCVGG-------NSATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       288 ld~~g~-------~~~~~~~~~l~~~G~~v~~g~  314 (405)
                      +....-       ..+....+.|+|+|+++....
T Consensus       155 ~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~  188 (297)
T 2o57_A          155 WSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP  188 (297)
T ss_dssp             EEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEe
Confidence            875432       234556799999999988753

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=94.83  E-value=0.14  Score=47.44  Aligned_cols=36  Identities=19%  Similarity=0.356  Sum_probs=32.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD  249 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~  249 (405)
                      .|.+|.|.|. |.+|...++.++.+|++|++..++.+
T Consensus       136 ~gktvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~~  171 (324)
T 3evt_A          136 TGQQLLIYGT-GQIGQSLAAKASALGMHVIGVNTTGH  171 (324)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cCCeEEEECc-CHHHHHHHHHHHhCCCEEEEECCCcc
Confidence            5889999999 99999999999999999999876543

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=94.83  E-value=0.063  Score=50.20  Aligned_cols=77  Identities=10%  Similarity=0.089  Sum_probs=45.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcC-CcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcC---CCCCcEEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDAS---IPKPKLAL  288 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G-~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~---g~g~Dvvl  288 (405)
                      ++.+|||.||+|.+|...++.+...| .+|+++.++.+...  .+.+..  .....|..+.+.+.+...   ..++|+||
T Consensus        45 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~--~~~~~~--~~~~~d~~~~~~~~~~~~~~~~~~~d~Vi  120 (357)
T 2x6t_A           45 EGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK--FVNLVD--LNIADYMDKEDFLIQIMAGEEFGDVEAIF  120 (357)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGG--GGGTTT--SCCSEEEEHHHHHHHHHTTCCCSSCCEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcch--hhcccC--ceEeeecCcHHHHHHHHhhcccCCCCEEE
Confidence            35789999999999999999998899 89999887644310  111111  111112222221222222   23699999


Q ss_pred             ECCCc
Q psy2960         289 NCVGG  293 (405)
Q Consensus       289 d~~g~  293 (405)
                      ++.+.
T Consensus       121 h~A~~  125 (357)
T 2x6t_A          121 HEGAC  125 (357)
T ss_dssp             ECCSC
T ss_pred             ECCcc
Confidence            99873

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=94.82  E-value=0.061  Score=46.75  Aligned_cols=99  Identities=16%  Similarity=0.118  Sum_probs=58.2

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHcC--CcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH---HhhhcCCCC
Q psy2960         209 NSLSPGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN---ISRDASIPK  283 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~aiqla~~~G--~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~---i~~~t~g~g  283 (405)
                      ..+++|++||-.|+  |.|..+..+++..|  .+++++-.+.+..+...+.++....-.++ ..|...   ....  ...
T Consensus        69 ~~~~~~~~vLDlG~--G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~-~~d~~~~~~~~~~--~~~  143 (227)
T 1g8a_A           69 FPIKPGKSVLYLGI--ASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPI-LGDATKPEEYRAL--VPK  143 (227)
T ss_dssp             CCCCTTCEEEEETT--TSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEE-ECCTTCGGGGTTT--CCC
T ss_pred             cCCCCCCEEEEEec--cCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEE-EccCCCcchhhcc--cCC
Confidence            45789999999998  34889999998875  56766643332222223333333111121 112111   1111  246


Q ss_pred             CcEEEECCCch----h-HHHHHHhcccCCEEEEE
Q psy2960         284 PKLALNCVGGN----S-ATNLLRTLVSKGVMVTY  312 (405)
Q Consensus       284 ~Dvvld~~g~~----~-~~~~~~~l~~~G~~v~~  312 (405)
                      +|+|+-.....    . +..+.+.|+|+|+++..
T Consensus       144 ~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  177 (227)
T 1g8a_A          144 VDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ceEEEECCCCHhHHHHHHHHHHHhcCCCCEEEEE
Confidence            89999665433    2 44567899999999886

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=94.79  E-value=0.39  Score=44.86  Aligned_cols=89  Identities=10%  Similarity=0.066  Sum_probs=57.7

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH-HhhhcCCCCCcEEEECC
Q psy2960         215 DVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCV  291 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~--G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~Dvvld~~  291 (405)
                      -+|.|.|+ |.+|...+...+..  +++++++++....  ...+.+.++|. .++  .++++ +.+    ..+|+|+.|+
T Consensus        14 ~rvgiiG~-G~~g~~~~~~l~~~~~~~~lvav~d~~~~--~~~~~~~~~~~-~~~--~~~~~ll~~----~~~D~V~i~t   83 (354)
T 3q2i_A           14 IRFALVGC-GRIANNHFGALEKHADRAELIDVCDIDPA--ALKAAVERTGA-RGH--ASLTDMLAQ----TDADIVILTT   83 (354)
T ss_dssp             EEEEEECC-STTHHHHHHHHHHTTTTEEEEEEECSSHH--HHHHHHHHHCC-EEE--SCHHHHHHH----CCCSEEEECS
T ss_pred             ceEEEEcC-cHHHHHHHHHHHhCCCCeEEEEEEcCCHH--HHHHHHHHcCC-cee--CCHHHHhcC----CCCCEEEECC
Confidence            47999999 89998877777665  7888888855432  22344556776 333  33344 322    4689999999


Q ss_pred             CchhHH-HHHHhcccCCEEEEEec
Q psy2960         292 GGNSAT-NLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       292 g~~~~~-~~~~~l~~~G~~v~~g~  314 (405)
                      ....-. .+..++..| +-+.+.+
T Consensus        84 p~~~h~~~~~~al~~g-k~v~~EK  106 (354)
T 3q2i_A           84 PSGLHPTQSIECSEAG-FHVMTEK  106 (354)
T ss_dssp             CGGGHHHHHHHHHHTT-CEEEECS
T ss_pred             CcHHHHHHHHHHHHCC-CCEEEeC
Confidence            876544 455666654 5566654

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=94.78  E-value=0.073  Score=50.08  Aligned_cols=86  Identities=9%  Similarity=0.126  Sum_probs=57.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      .|.+|.|.|. |.+|...++.++.+|++|++..++..     .+.+...|+..    .+++++.+     ..|+|+-++.
T Consensus       175 ~gktvGIIGl-G~IG~~vA~~l~~fG~~V~~~d~~~~-----~~~~~~~g~~~----~~l~ell~-----~aDvV~l~~P  239 (365)
T 4hy3_A          175 AGSEIGIVGF-GDLGKALRRVLSGFRARIRVFDPWLP-----RSMLEENGVEP----ASLEDVLT-----KSDFIFVVAA  239 (365)
T ss_dssp             SSSEEEEECC-SHHHHHHHHHHTTSCCEEEEECSSSC-----HHHHHHTTCEE----CCHHHHHH-----SCSEEEECSC
T ss_pred             CCCEEEEecC-CcccHHHHHhhhhCCCEEEEECCCCC-----HHHHhhcCeee----CCHHHHHh-----cCCEEEEcCc
Confidence            4889999999 99999999999999999988865432     23344566642    12333211     3578777665


Q ss_pred             ch-h----H-HHHHHhcccCCEEEEEe
Q psy2960         293 GN-S----A-TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       293 ~~-~----~-~~~~~~l~~~G~~v~~g  313 (405)
                      .. .    + ...+..|++++.++.++
T Consensus       240 lt~~T~~li~~~~l~~mk~gailIN~a  266 (365)
T 4hy3_A          240 VTSENKRFLGAEAFSSMRRGAAFILLS  266 (365)
T ss_dssp             SSCC---CCCHHHHHTSCTTCEEEECS
T ss_pred             CCHHHHhhcCHHHHhcCCCCcEEEECc
Confidence            32 1    1 24567778888877776

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=94.76  E-value=0.066  Score=50.12  Aligned_cols=87  Identities=18%  Similarity=0.188  Sum_probs=52.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      .|.+|.|.|. |.+|...++.++..|++|++..++.+.     ......|+..+.+   ++++.+     ..|+|+.++.
T Consensus       167 ~g~tvGIIG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~-----~~~~~~g~~~~~~---l~ell~-----~aDvV~l~~P  232 (347)
T 1mx3_A          167 RGETLGIIGL-GRVGQAVALRAKAFGFNVLFYDPYLSD-----GVERALGLQRVST---LQDLLF-----HSDCVTLHCG  232 (347)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSCT-----THHHHHTCEECSS---HHHHHH-----HCSEEEECCC
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEECCCcch-----hhHhhcCCeecCC---HHHHHh-----cCCEEEEcCC
Confidence            5889999999 999999999999999999887654332     1123455533212   222111     2366666554


Q ss_pred             ch-----hH-HHHHHhcccCCEEEEEe
Q psy2960         293 GN-----SA-TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       293 ~~-----~~-~~~~~~l~~~G~~v~~g  313 (405)
                      ..     .+ ...+..|+++..++.++
T Consensus       233 ~t~~t~~li~~~~l~~mk~gailIN~a  259 (347)
T 1mx3_A          233 LNEHNHHLINDFTVKQMRQGAFLVNTA  259 (347)
T ss_dssp             CCTTCTTSBSHHHHTTSCTTEEEEECS
T ss_pred             CCHHHHHHhHHHHHhcCCCCCEEEECC
Confidence            31     11 23455566666666555

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=94.76  E-value=0.084  Score=50.59  Aligned_cols=93  Identities=19%  Similarity=0.161  Sum_probs=55.4

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCC---cEEEEecCCcchHHHHHHHHHcC---CcE-EeChh---hHHH-HhhhcCCCC
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGL---KTINIVRNRDDIDKLKSYLKSLG---ADY-VFTEE---ELRN-ISRDASIPK  283 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~---~v~~~~~~~~~~~~~~~~~~~lg---~~~-v~~~~---d~~~-i~~~t~g~g  283 (405)
                      .+|+|.|+ |++|..+++.+...|.   +++++.++.++.+...+.+...+   ... .+|..   +..+ +.+.    +
T Consensus         2 ~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~----~   76 (405)
T 4ina_A            2 AKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEV----K   76 (405)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHH----C
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhh----C
Confidence            37999999 9999999998888873   66666655444333333333221   222 22333   3333 3332    5


Q ss_pred             CcEEEECCCchhHHH-HHHhcccCCEEEEE
Q psy2960         284 PKLALNCVGGNSATN-LLRTLVSKGVMVTY  312 (405)
Q Consensus       284 ~Dvvld~~g~~~~~~-~~~~l~~~G~~v~~  312 (405)
                      +|+|++|+|...... .-.|+..+-.++.+
T Consensus        77 ~DvVin~ag~~~~~~v~~a~l~~g~~vvD~  106 (405)
T 4ina_A           77 PQIVLNIALPYQDLTIMEACLRTGVPYLDT  106 (405)
T ss_dssp             CSEEEECSCGGGHHHHHHHHHHHTCCEEES
T ss_pred             CCEEEECCCcccChHHHHHHHHhCCCEEEe
Confidence            899999998644333 34566666666654

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=94.76  E-value=0.15  Score=48.05  Aligned_cols=110  Identities=15%  Similarity=0.176  Sum_probs=68.4

Q ss_pred             CcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC----c------chHHHHHHHHHcCCcE
Q psy2960         196 SNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR----D------DIDKLKSYLKSLGADY  265 (405)
Q Consensus       196 ~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~----~------~~~~~~~~~~~lg~~~  265 (405)
                      +.+...+.++...+.--+..+|+|.|+ |..|.++++++..+|++.+.++++.    .      ..+.+..++++...  
T Consensus       174 V~lAal~~A~~i~g~~l~~~kVVv~GA-GaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~--  250 (388)
T 1vl6_A          174 VVSAAFLNALKLTEKKIEEVKVVVNGI-GAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNP--  250 (388)
T ss_dssp             HHHHHHHHHHHHHTCCTTTCEEEEECC-SHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT--
T ss_pred             HHHHHHHHHHHHhCCCCCCcEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhc--
Confidence            344445556654442236689999999 9999999999999999666666443    2      12223445544321  


Q ss_pred             EeChhhHHH-HhhhcCCCCCcEEEECCCchhH-HHHHHhcccCCEEEEEec
Q psy2960         266 VFTEEELRN-ISRDASIPKPKLALNCVGGNSA-TNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       266 v~~~~d~~~-i~~~t~g~g~Dvvld~~g~~~~-~~~~~~l~~~G~~v~~g~  314 (405)
                      ..+..++.+ +.      +.|++|-+++...+ .+.++.|+++..++.+..
T Consensus       251 ~~~~~~L~eav~------~ADVlIG~Sap~l~t~emVk~Ma~~pIIfalSN  295 (388)
T 1vl6_A          251 ERLSGDLETALE------GADFFIGVSRGNILKPEWIKKMSRKPVIFALAN  295 (388)
T ss_dssp             TCCCSCHHHHHT------TCSEEEECSCSSCSCHHHHTTSCSSCEEEECCS
T ss_pred             cCchhhHHHHHc------cCCEEEEeCCCCccCHHHHHhcCCCCEEEEcCC
Confidence            112233444 32      46999998884333 466788888776666554

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=94.75  E-value=0.091  Score=46.90  Aligned_cols=108  Identities=11%  Similarity=0.071  Sum_probs=65.6

Q ss_pred             HHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc--EEeChhhHHHHhhhc
Q psy2960         202 YRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YVFTEEELRNISRDA  279 (405)
Q Consensus       202 ~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~--~v~~~~d~~~i~~~t  279 (405)
                      ...+.....++++++||-.|+  |.|..+..+++.-+++++++--+++..+...+.+...|..  .-+-..|...+.  .
T Consensus        35 ~~~l~~l~~~~~~~~vLDiGc--G~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~  110 (267)
T 3kkz_A           35 LKALSFIDNLTEKSLIADIGC--GTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP--F  110 (267)
T ss_dssp             HHHHTTCCCCCTTCEEEEETC--TTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC--C
T ss_pred             HHHHHhcccCCCCCEEEEeCC--CCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCC--C
Confidence            334444345789999999998  4689999999986668888765544433334444555542  112112221111  1


Q ss_pred             CCCCCcEEEECCCc------hhHHHHHHhcccCCEEEEEe
Q psy2960         280 SIPKPKLALNCVGG------NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       280 ~g~g~Dvvld~~g~------~~~~~~~~~l~~~G~~v~~g  313 (405)
                      ....+|+|+....-      ..+....+.|+|+|+++...
T Consensus       111 ~~~~fD~i~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  150 (267)
T 3kkz_A          111 RNEELDLIWSEGAIYNIGFERGLNEWRKYLKKGGYLAVSE  150 (267)
T ss_dssp             CTTCEEEEEESSCGGGTCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CCCCEEEEEEcCCceecCHHHHHHHHHHHcCCCCEEEEEE
Confidence            13568999864432      22345568899999998765

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=94.73  E-value=0.41  Score=45.08  Aligned_cols=92  Identities=10%  Similarity=0.013  Sum_probs=58.9

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHH--------cCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcE
Q psy2960         215 DVVIQNGANSACGQNVIQIARH--------WGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKL  286 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~--------~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dv  286 (405)
                      =+|.|.|+ |.+|...+...+.        -+++++++++.....  ..+.++++|...+++  |++++.+   ...+|+
T Consensus        26 irvgiIG~-G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~--a~~~a~~~g~~~~y~--d~~ell~---~~~iDa   97 (393)
T 4fb5_A           26 LGIGLIGT-GYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGL--AEARAGEFGFEKATA--DWRALIA---DPEVDV   97 (393)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TT--HHHHHHHHTCSEEES--CHHHHHH---CTTCCE
T ss_pred             ccEEEEcC-CHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHH--HHHHHHHhCCCeecC--CHHHHhc---CCCCcE
Confidence            37999998 8999865544332        267899998665432  345667888876653  3333222   347899


Q ss_pred             EEECCCchh-HHHHHHhcccCCEEEEEecc
Q psy2960         287 ALNCVGGNS-ATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       287 vld~~g~~~-~~~~~~~l~~~G~~v~~g~~  315 (405)
                      |+-|+.... ...+..+|.. |+-|++-++
T Consensus        98 V~IatP~~~H~~~a~~al~a-GkhVl~EKP  126 (393)
T 4fb5_A           98 VSVTTPNQFHAEMAIAALEA-GKHVWCEKP  126 (393)
T ss_dssp             EEECSCGGGHHHHHHHHHHT-TCEEEECSC
T ss_pred             EEECCChHHHHHHHHHHHhc-CCeEEEccC
Confidence            999998654 4455666654 666777654

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=94.71  E-value=0.1  Score=49.74  Aligned_cols=97  Identities=18%  Similarity=0.184  Sum_probs=58.1

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc-EEeChhhHHH-HhhhcCCCCCcEEE
Q psy2960         211 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YVFTEEELRN-ISRDASIPKPKLAL  288 (405)
Q Consensus       211 ~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~-~v~~~~d~~~-i~~~t~g~g~Dvvl  288 (405)
                      +++|++||=.|+  |.|..++.+|+. |++|+++--+++..+...+.+...|.+ .+. ..|..+ +... .+. +|+|+
T Consensus       212 ~~~g~~VLDlg~--GtG~~sl~~a~~-ga~V~avDis~~al~~a~~n~~~ng~~~~~~-~~D~~~~l~~~-~~~-fD~Ii  285 (393)
T 4dmg_A          212 VRPGERVLDVYS--YVGGFALRAARK-GAYALAVDKDLEALGVLDQAALRLGLRVDIR-HGEALPTLRGL-EGP-FHHVL  285 (393)
T ss_dssp             CCTTCEEEEESC--TTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCCCEEE-ESCHHHHHHTC-CCC-EEEEE
T ss_pred             hcCCCeEEEccc--chhHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHhCCCCcEE-EccHHHHHHHh-cCC-CCEEE
Confidence            457999998887  567777777774 888655543333323333334444554 333 334333 3332 344 99988


Q ss_pred             ECCCc----------------hhHHHHHHhcccCCEEEEEe
Q psy2960         289 NCVGG----------------NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       289 d~~g~----------------~~~~~~~~~l~~~G~~v~~g  313 (405)
                      -....                +.+..++++|+|+|.++.+.
T Consensus       286 ~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s  326 (393)
T 4dmg_A          286 LDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSS  326 (393)
T ss_dssp             ECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence            53332                33445688999999998665

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=94.70  E-value=0.11  Score=49.06  Aligned_cols=92  Identities=13%  Similarity=0.063  Sum_probs=59.0

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCCch
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGN  294 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~~  294 (405)
                      -+|+|.|| |.+|..+++.+.. ..++.++..+    .++++.+++......+|..|.+.+.+..  .+.|+||+|++..
T Consensus        17 mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~----~~~~~~~~~~~~~~~~d~~d~~~l~~~~--~~~DvVi~~~p~~   88 (365)
T 3abi_A           17 MKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVN----NENLEKVKEFATPLKVDASNFDKLVEVM--KEFELVIGALPGF   88 (365)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTT-TSEEEEEESC----HHHHHHHTTTSEEEECCTTCHHHHHHHH--TTCSEEEECCCGG
T ss_pred             cEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcC----HHHHHHHhccCCcEEEecCCHHHHHHHH--hCCCEEEEecCCc
Confidence            37999999 9999998877743 4566555433    2335555554333335555544444432  3679999999876


Q ss_pred             hHHH-HHHhcccCCEEEEEec
Q psy2960         295 SATN-LLRTLVSKGVMVTYGG  314 (405)
Q Consensus       295 ~~~~-~~~~l~~~G~~v~~g~  314 (405)
                      .-.. +-.|+..+=.++.+..
T Consensus        89 ~~~~v~~~~~~~g~~yvD~s~  109 (365)
T 3abi_A           89 LGFKSIKAAIKSKVDMVDVSF  109 (365)
T ss_dssp             GHHHHHHHHHHHTCEEEECCC
T ss_pred             ccchHHHHHHhcCcceEeeec
Confidence            4443 3467777878888763

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=94.69  E-value=0.074  Score=48.18  Aligned_cols=97  Identities=14%  Similarity=0.169  Sum_probs=57.3

Q ss_pred             HHHHHhhcCC-CCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhc
Q psy2960         202 YRMLKDYNSL-SPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDA  279 (405)
Q Consensus       202 ~~al~~~~~~-~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t  279 (405)
                      ..+|.. .++ -.|.++||.|+ |++|.+++..+...|+ +++++.++.++   ..+.+..+   .....++   +.+  
T Consensus       110 ~~~L~~-~~~~~~~k~vlvlGa-GGaaraia~~L~~~G~~~v~v~nRt~~k---a~~La~~~---~~~~~~~---l~~--  176 (282)
T 3fbt_A          110 GKMLSK-FRVEIKNNICVVLGS-GGAARAVLQYLKDNFAKDIYVVTRNPEK---TSEIYGEF---KVISYDE---LSN--  176 (282)
T ss_dssp             HHHHHH-TTCCCTTSEEEEECS-STTHHHHHHHHHHTTCSEEEEEESCHHH---HHHHCTTS---EEEEHHH---HTT--
T ss_pred             HHHHHH-cCCCccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEEeCCHHH---HHHHHHhc---CcccHHH---HHh--
Confidence            334444 233 35899999999 8999999999999999 55555544322   11222222   1222222   222  


Q ss_pred             CCCCCcEEEECCCchhH------HHHHHhcccCCEEEEEe
Q psy2960         280 SIPKPKLALNCVGGNSA------TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       280 ~g~g~Dvvld~~g~~~~------~~~~~~l~~~G~~v~~g  313 (405)
                       - .+|+||+|++....      .-....++++..++.+.
T Consensus       177 -l-~~DivInaTp~Gm~~~~~~~pi~~~~l~~~~~v~Dlv  214 (282)
T 3fbt_A          177 -L-KGDVIINCTPKGMYPKEGESPVDKEVVAKFSSAVDLI  214 (282)
T ss_dssp             -C-CCSEEEECSSTTSTTSTTCCSSCHHHHTTCSEEEESC
T ss_pred             -c-cCCEEEECCccCccCCCccCCCCHHHcCCCCEEEEEe
Confidence             2 68999999853211      11245677777777765

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=94.66  E-value=0.038  Score=50.64  Aligned_cols=69  Identities=12%  Similarity=0.177  Sum_probs=45.4

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         216 VVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~--G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      +|||.||+|.+|...++.+...  |.+|+++.++.+..+         +...+ .|-.|.+.+.+.....++|+||.+.+
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~---------~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~   71 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTG---------GIKFITLDVSNRDEIDRAVEKYSIDAIFHLAG   71 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCCT---------TCCEEECCTTCHHHHHHHHHHTTCCEEEECCC
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCcccc---------CceEEEecCCCHHHHHHHHhhcCCcEEEECCc
Confidence            4899999999999999888777  789998876544311         33333 24333322222221237899999987


Q ss_pred             c
Q psy2960         293 G  293 (405)
Q Consensus       293 ~  293 (405)
                      .
T Consensus        72 ~   72 (317)
T 3ajr_A           72 I   72 (317)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=94.65  E-value=0.13  Score=48.17  Aligned_cols=88  Identities=18%  Similarity=0.183  Sum_probs=55.8

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH-HhhhcCCCCCcEEEE
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIAR-HWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALN  289 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~-~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~Dvvld  289 (405)
                      -.|.+|.|.|. |.+|...++.++ ..|++|++..++.+..    +.+.++|...+   .+..+ +.      ..|+|+.
T Consensus       161 l~g~~vgIIG~-G~IG~~vA~~l~~~~G~~V~~~d~~~~~~----~~~~~~g~~~~---~~l~ell~------~aDvVil  226 (348)
T 2w2k_A          161 PRGHVLGAVGL-GAIQKEIARKAVHGLGMKLVYYDVAPADA----ETEKALGAERV---DSLEELAR------RSDCVSV  226 (348)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSCCCH----HHHHHHTCEEC---SSHHHHHH------HCSEEEE
T ss_pred             CCCCEEEEEEE-CHHHHHHHHHHHHhcCCEEEEECCCCcch----hhHhhcCcEEe---CCHHHHhc------cCCEEEE
Confidence            36889999999 999999999999 9999988876554432    22334555422   12223 22      2477777


Q ss_pred             CCCchh-----H-HHHHHhcccCCEEEEEe
Q psy2960         290 CVGGNS-----A-TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       290 ~~g~~~-----~-~~~~~~l~~~G~~v~~g  313 (405)
                      ++....     + ...+..++++..++.++
T Consensus       227 ~vp~~~~t~~li~~~~l~~mk~gailin~s  256 (348)
T 2w2k_A          227 SVPYMKLTHHLIDEAFFAAMKPGSRIVNTA  256 (348)
T ss_dssp             CCCCSGGGTTCBCHHHHHHSCTTEEEEECS
T ss_pred             eCCCChHHHHHhhHHHHhcCCCCCEEEECC
Confidence            765321     1 23456666666666554

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=94.57  E-value=0.4  Score=44.59  Aligned_cols=135  Identities=7%  Similarity=0.067  Sum_probs=78.5

Q ss_pred             EEEEeCCCcHHHHH-HHHHHHH-cCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCCc
Q psy2960         216 VVIQNGANSACGQN-VIQIARH-WGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGG  293 (405)
Q Consensus       216 ~VLI~ga~G~vG~~-aiqla~~-~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~  293 (405)
                      +|.|.|+ |.+|.. .+...+. -+++++++++.+.  +...+.++++|...+++  |++++.+   ...+|+|+-|+..
T Consensus        25 rigiIG~-G~ig~~~~~~~~~~~~~~~lvav~d~~~--~~a~~~a~~~g~~~~y~--d~~ell~---~~~iDaV~I~tP~   96 (350)
T 4had_A           25 RFGIIST-AKIGRDNVVPAIQDAENCVVTAIASRDL--TRAREMADRFSVPHAFG--SYEEMLA---SDVIDAVYIPLPT   96 (350)
T ss_dssp             EEEEESC-CHHHHHTHHHHHHHCSSEEEEEEECSSH--HHHHHHHHHHTCSEEES--SHHHHHH---CSSCSEEEECSCG
T ss_pred             EEEEEcC-hHHHHHHHHHHHHhCCCeEEEEEECCCH--HHHHHHHHHcCCCeeeC--CHHHHhc---CCCCCEEEEeCCC
Confidence            7999999 899975 3444444 4889999986543  23456677888877653  3333222   3578999999987


Q ss_pred             hh-HHHHHHhcccCCEEEEEeccCCCCcccCccccc----ccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCcc
Q psy2960         294 NS-ATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFI----FKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL  368 (405)
Q Consensus       294 ~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~----~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l  368 (405)
                      .. ...+..+|.. |+-|++-++-..+.. ....+.    .+++.+.-.+...+          ...+..+.+++++|.|
T Consensus        97 ~~H~~~~~~al~a-GkhVl~EKPla~~~~-ea~~l~~~a~~~~~~l~v~~~~R~----------~p~~~~~k~~i~~G~i  164 (350)
T 4had_A           97 SQHIEWSIKAADA-GKHVVCEKPLALKAG-DIDAVIAARDRNKVVVTEAYMITY----------SPVWQKVRSLIDEGAI  164 (350)
T ss_dssp             GGHHHHHHHHHHT-TCEEEECSCCCSSGG-GGHHHHHHHHHHTCCEEECCGGGG----------SHHHHHHHHHHHTTTT
T ss_pred             chhHHHHHHHHhc-CCEEEEeCCcccchh-hHHHHHHHHHHcCCceeEeeeeec----------CHHHHHhhHhhhcCCC
Confidence            54 4455666654 666777654322111 111111    23333322222111          2336677788899887


Q ss_pred             cC
Q psy2960         369 AA  370 (405)
Q Consensus       369 ~~  370 (405)
                      -.
T Consensus       165 G~  166 (350)
T 4had_A          165 GS  166 (350)
T ss_dssp             SS
T ss_pred             Cc
Confidence            54

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=94.52  E-value=0.062  Score=49.94  Aligned_cols=87  Identities=17%  Similarity=0.134  Sum_probs=59.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH-HhhhcCCCCCcEEEECC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCV  291 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~Dvvld~~  291 (405)
                      .|.+|.|.|. |.+|...++.++.+|++|++..++...    .+....+|+...    ++++ +.      ..|+|+.++
T Consensus       144 ~g~tvGIIG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~----~~~~~~~g~~~~----~l~ell~------~aDvV~l~~  208 (330)
T 4e5n_A          144 DNATVGFLGM-GAIGLAMADRLQGWGATLQYHEAKALD----TQTEQRLGLRQV----ACSELFA------SSDFILLAL  208 (330)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHTTTSCCEEEEECSSCCC----HHHHHHHTEEEC----CHHHHHH------HCSEEEECC
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHHCCCEEEEECCCCCc----HhHHHhcCceeC----CHHHHHh------hCCEEEEcC
Confidence            5889999999 999999999999999999888765422    233445565321    2333 32      248888877


Q ss_pred             Cch-----hH-HHHHHhcccCCEEEEEec
Q psy2960         292 GGN-----SA-TNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       292 g~~-----~~-~~~~~~l~~~G~~v~~g~  314 (405)
                      ...     .+ ...+..|+++..++.++.
T Consensus       209 P~t~~t~~li~~~~l~~mk~gailIN~ar  237 (330)
T 4e5n_A          209 PLNADTLHLVNAELLALVRPGALLVNPCR  237 (330)
T ss_dssp             CCSTTTTTCBCHHHHTTSCTTEEEEECSC
T ss_pred             CCCHHHHHHhCHHHHhhCCCCcEEEECCC
Confidence            631     11 245777888888888763

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=94.50  E-value=0.12  Score=44.26  Aligned_cols=69  Identities=19%  Similarity=0.129  Sum_probs=46.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCC--cEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALN  289 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~--~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld  289 (405)
                      .+.+|||.||+|.+|...++.+...|.  +|++++++.+.        ...+...+ .|..+.+.+.+..    +|+|++
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~--------~~~~~~~~~~D~~~~~~~~~~~----~d~vi~   71 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA--------EHPRLDNPVGPLAELLPQLDGS----IDTAFC   71 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC--------CCTTEECCBSCHHHHGGGCCSC----CSEEEE
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc--------cCCCceEEeccccCHHHHHHhh----hcEEEE
Confidence            357899999999999999999999998  88888876543        01111111 1223322233332    899999


Q ss_pred             CCCc
Q psy2960         290 CVGG  293 (405)
Q Consensus       290 ~~g~  293 (405)
                      +.|.
T Consensus        72 ~a~~   75 (215)
T 2a35_A           72 CLGT   75 (215)
T ss_dssp             CCCC
T ss_pred             Ceee
Confidence            9984

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=94.50  E-value=0.11  Score=47.80  Aligned_cols=36  Identities=25%  Similarity=0.279  Sum_probs=32.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD  249 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~  249 (405)
                      .|.+|.|.|. |.+|...++.++.+|++|++..++.+
T Consensus       138 ~g~tvGIiG~-G~IG~~vA~~l~~~G~~V~~~dr~~~  173 (315)
T 3pp8_A          138 EEFSVGIMGA-GVLGAKVAESLQAWGFPLRCWSRSRK  173 (315)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHHCCCEEEEEcCCch
Confidence            5889999999 99999999999999999999876644

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=94.47  E-value=0.08  Score=50.28  Aligned_cols=37  Identities=14%  Similarity=0.114  Sum_probs=30.1

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecC
Q psy2960         211 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN  247 (405)
Q Consensus       211 ~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~  247 (405)
                      -..+.+|||.||+|-+|...+..+...|++|+++.+.
T Consensus         8 ~~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~   44 (404)
T 1i24_A            8 HHHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNL   44 (404)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             ccCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEec
Confidence            3568999999999999999999888899999988653

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=94.41  E-value=0.24  Score=47.28  Aligned_cols=111  Identities=14%  Similarity=0.187  Sum_probs=64.4

Q ss_pred             HHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCcchHHHH-------HHHHHcCC--cEE-eCh
Q psy2960         201 AYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLK-------SYLKSLGA--DYV-FTE  269 (405)
Q Consensus       201 a~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~~~~~~~-------~~~~~lg~--~~v-~~~  269 (405)
                      .+..+....++++|++||=.|+  |.|..++++|+..|+. ++++--+++..+...       +.++..|.  +.| +-.
T Consensus       161 ~i~~il~~l~l~~gd~VLDLGC--GtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~  238 (438)
T 3uwp_A          161 LVAQMIDEIKMTDDDLFVDLGS--GVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER  238 (438)
T ss_dssp             HHHHHHHHHCCCTTCEEEEESC--TTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEE
T ss_pred             HHHHHHHhcCCCCCCEEEEeCC--CCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence            4444556678999999999998  6799999999999997 777643322111111       11223342  333 212


Q ss_pred             hhHHH--HhhhcCCCCCcEEEEC-C--Cc---hhHHHHHHhcccCCEEEEEecc
Q psy2960         270 EELRN--ISRDASIPKPKLALNC-V--GG---NSATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       270 ~d~~~--i~~~t~g~g~Dvvld~-~--g~---~~~~~~~~~l~~~G~~v~~g~~  315 (405)
                      .|+..  ....  -..+|+|+-. .  ..   ..+...++.|+|||+|+..-..
T Consensus       239 GD~~~lp~~d~--~~~aDVVf~Nn~~F~pdl~~aL~Ei~RvLKPGGrIVssE~f  290 (438)
T 3uwp_A          239 GDFLSEEWRER--IANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPF  290 (438)
T ss_dssp             CCTTSHHHHHH--HHTCSEEEECCTTCCHHHHHHHHHHHTTSCTTCEEEESSCS
T ss_pred             CcccCCccccc--cCCccEEEEcccccCchHHHHHHHHHHcCCCCcEEEEeecc
Confidence            22211  2111  1257998842 1  21   2233456889999999987543

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=94.41  E-value=0.091  Score=51.27  Aligned_cols=94  Identities=14%  Similarity=0.129  Sum_probs=55.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcE-EeChhhHHHHhhhcCCCCCcEEEEC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADY-VFTEEELRNISRDASIPKPKLALNC  290 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v~~~~d~~~i~~~t~g~g~Dvvld~  290 (405)
                      .+.+|+|.|+ |++|.+++..+... |.+++++.++.++.   .+.+...+... .+|..+.+.+.+..  .++|+||+|
T Consensus        22 ~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka---~~la~~~~~~~~~~D~~d~~~l~~~l--~~~DvVIn~   95 (467)
T 2axq_A           22 MGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANA---QALAKPSGSKAISLDVTDDSALDKVL--ADNDVVISL   95 (467)
T ss_dssp             -CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHH---HHHHGGGTCEEEECCTTCHHHHHHHH--HTSSEEEEC
T ss_pred             CCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHH---HHHHHhcCCcEEEEecCCHHHHHHHH--cCCCEEEEC
Confidence            4678999998 99999999888877 67766666543321   12222234332 23433332222221  268999999


Q ss_pred             CCchhHHH-HHHhcccCCEEEEE
Q psy2960         291 VGGNSATN-LLRTLVSKGVMVTY  312 (405)
Q Consensus       291 ~g~~~~~~-~~~~l~~~G~~v~~  312 (405)
                      ++...... ...+++++-.++..
T Consensus        96 tp~~~~~~v~~a~l~~g~~vvd~  118 (467)
T 2axq_A           96 IPYTFHPNVVKSAIRTKTDVVTS  118 (467)
T ss_dssp             SCGGGHHHHHHHHHHHTCEEEEC
T ss_pred             CchhhhHHHHHHHHhcCCEEEEe
Confidence            98654322 33566666666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	405
d1gu7a2	189	c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yea	2e-28
d1pqwa_	183	c.2.1.1 (A:) Putative enoyl reductase domain of po	5e-13
d1v3va2	182	c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehyd	1e-12
d1llua1	175	b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase	2e-12
d1yb5a1	150	b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductas	1e-11
d1gu7a1	175	b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA redu	5e-11
d1yb5a2	174	c.2.1.1 (A:121-294) Quinone oxidoreductase {Human	6e-11
d1vj1a2	187	c.2.1.1 (A:125-311) Putative zinc-binding alcohol	7e-11
d1qora2	179	c.2.1.1 (A:113-291) Quinone oxidoreductase {Escher	7e-10
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	2e-09
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	4e-09
d1tt7a2	167	c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bac	5e-09
d1jvba1	177	b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase	3e-08
d1tt7a1	162	b.35.1.2 (A:2-127,A:295-330) Hypothetical protein	3e-08
d1iz0a2	171	c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus	3e-08
d1rjwa1	171	b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase	6e-08
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	1e-07
d1xa0a1	152	b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homo	2e-07
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	3e-07
d1iz0a1	131	b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase	3e-07
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	4e-07
d2jhfa2	176	c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (	7e-07
d1e3ja1	178	b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor	7e-07
d1o89a2	177	c.2.1.1 (A:116-292) Hypothetical protein YhdH {Esc	8e-07
d1f8fa2	174	c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {	2e-06
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	2e-06
d1o89a1	146	b.35.1.2 (A:1-115,A:293-323) Hypothetical protein	2e-06
d1p0fa2	174	c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog	5e-06
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	1e-05
d1qora1	147	b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductas	1e-05
d1jvba2	170	c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeo	1e-05
d1h2ba1	171	b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenas	2e-05
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	2e-05
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	3e-05
d2jhfa1	198	b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase	3e-05
d1llua2	166	c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudom	5e-05
d1d1ta2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	7e-05
d1e3ia2	174	c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (	6e-04
d1pl8a1	185	b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor	0.001

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 189

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score =  108 bits (269), Expect = 2e-28
 Identities = 77/191 (40%), Positives = 112/191 (58%), Gaps = 11/191 (5%)

Query: 186 IALTEISGITSNPCTAYRMLKDYNSLSPG-DVVIQNGANSACGQNVIQIARHWGLKTINI 244
           + + + + I+ NP TAY ML  Y  L+PG D  IQNG  SA G+   QI +     +I++
Sbjct: 1   LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISV 60

Query: 245 VRNRDDIDKLKSYLKSLGADYVFTEEELRNISRD--------ASIPKPKLALNCVGGNSA 296
           +R+R ++D++ + LK LGA  V TE++  +             S  + KLALNCVGG S+
Sbjct: 61  IRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSS 120

Query: 297 TNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMM 356
           T + R L + G+M+TYGGMS +PV IPTS +IFK+ T  G W+T   K NKE   + S +
Sbjct: 121 TGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKE--LKTSTL 178

Query: 357 NELTEMMRTGK 367
           N++      GK
Sbjct: 179 NQIIAWYEEGK 189

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 183

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 65.1 bits (157), Expect = 5e-13
 Identities = 28/180 (15%), Positives = 58/180 (32%), Gaps = 5/180 (2%)

Query: 190 EISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD 249
           E +       TA+  L +   LSPG+ V+ + A    G   + IA+  G +      +  
Sbjct: 2   EAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDA 61

Query: 250 DIDKLKSYLKSLGADYVFTEEELRNISRDASIPKP-KLALNCVGGNSATNLLRTLVSKGV 308
             + L         D      +  +   + +      + LN + G +    ++ L   G 
Sbjct: 62  KREMLSRLGVEYVGDS--RSVDFADEILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGR 119

Query: 309 MVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGKL 368
            +  G            A + K  +     +    K        + ++  + + +  GKL
Sbjct: 120 FIELGKKDVYADASLGLAALAKSASFSVVDLDLNLKLQPA--RYRQLLQHILQHVADGKL 177

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

 Score = 63.9 bits (154), Expect = 1e-12
 Identities = 40/173 (23%), Positives = 66/173 (38%), Gaps = 12/173 (6%)

Query: 200 TAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK 259
           TAY  L +   +  G+ V+ + A  A G  V QIA+  G K +    + + I  LK    
Sbjct: 16  TAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI-G 74

Query: 260 SLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSRE- 318
              A    T   L    + AS        + VGG     +L  +   G +   G +S   
Sbjct: 75  FDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAISVYN 134

Query: 319 -----PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTG 366
                P      + I+K + + G  + RWQ +      R+  + +L + +  G
Sbjct: 135 RMDQLPPGPSPESIIYKQLRIEGFIVYRWQGD-----VREKALRDLMKWVLEG 182

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 63.4 bits (153), Expect = 2e-12
 Identities = 38/169 (22%), Positives = 66/169 (39%), Gaps = 32/169 (18%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
            V + +G PLR+  V+          +V+VK+  + V   D++  +G +P+KP LP +PG
Sbjct: 9   AVVHAYGAPLRIEEVKVPLP---GPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPG 65

Query: 136 FEGVGEVVEVGSDVSSLAVGDHVIPDTQHLG---------------------------TW 168
            EGVG V  VGS V+ +  GD V     +                              +
Sbjct: 66  HEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGYSVNGGY 125

Query: 169 RNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVV 217
             Y   + + +  +PK++  T   G   +       ++       G +V
Sbjct: 126 AEYVLADPNYVGILPKNVKATIHPGKLDDINQILDQMR--AGQIEGRIV 172

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (143), Expect = 1e-11
 Identities = 30/144 (20%), Positives = 56/144 (38%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
           +   + G P  +    +  +   + H+V++K+    VNP +     G Y  KP LP  PG
Sbjct: 6   VRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPG 65

Query: 136 FEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGIT 195
            +  G +  VG + S+   GD V   +   G +  Y       + K+P+ +     S   
Sbjct: 66  SDVAGVIEAVGDNASAFKKGDRVFTSSTISGGYAEYALAADHTVYKLPEKLKPVIGSQYP 125

Query: 196 SNPCTAYRMLKDYNSLSPGDVVIQ 219
                       + S + G +++ 
Sbjct: 126 LEKVAEAHENIIHGSGATGKMILL 149

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 59.0 bits (141), Expect = 5e-11
 Identities = 61/170 (35%), Positives = 90/170 (52%), Gaps = 15/170 (8%)

Query: 76  LVYNQHGTPLRVVTVENETLN--SVQKHEVVVKMLVAPVNPADINTIQGVYPIK------ 127
           ++Y QHG P  V+  ++  ++  ++  +EV+VK L +PVNP+DIN IQGVYP K      
Sbjct: 7   VLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTG 66

Query: 128 ---PTLPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPK 184
                  A  G EG+ EV++VGS+VSSL  GD VIP   + GTWR +   N D  +K+P 
Sbjct: 67  FGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIKLPN 126

Query: 185 DIALTEISGITSNPCTAYRMLKD-YNSLSPGDVVIQNG-ANSACGQNVIQ 232
                          T  + ++  Y+   P   + Q+G ANS  G+ +I 
Sbjct: 127 PAQSKANGKPN--GLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLIT 174

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (140), Expect = 6e-11
 Identities = 32/181 (17%), Positives = 63/181 (34%), Gaps = 8/181 (4%)

Query: 186 IALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIV 245
           +   + + I     TAYR L     +  G+ V+ +GA+   G    QIAR +GLK +   
Sbjct: 1   LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTA 60

Query: 246 RNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVS 305
              +    +         ++      +  I +        + +  +   + +  L  L  
Sbjct: 61  GTEEGQKIVLQNGAHEVFNH-REVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSH 119

Query: 306 KGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRT 365
            G ++  G      ++I     + K+ ++ G  +    KE     E +     L   M  
Sbjct: 120 GGRVIVVGSRG--TIEINPRDTMAKESSIIGVTLFSSTKE-----EFQQYAAALQAGMEI 172

Query: 366 G 366
           G
Sbjct: 173 G 173

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 187

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.9 bits (141), Expect = 7e-11
 Identities = 25/179 (13%), Positives = 65/179 (36%), Gaps = 17/179 (9%)

Query: 200 TAYRMLKDYNSLSPG--DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSY 257
           T+   +++   +S G    ++ +GA  ACG    QI    G   +  +    +     + 
Sbjct: 15  TSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTS 74

Query: 258 LKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSR 317
                A   +    +    R+A      +  + VGG+ +  ++  +     ++  G +S+
Sbjct: 75  ELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVGGDISNTVISQMNENSHIILCGQISQ 134

Query: 318 EPVQIPT---------SAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGK 367
               +P          +    ++IT     +  ++ + +        + +L++  + GK
Sbjct: 135 YNKDVPYPPPLPPAVEAIRKERNITRERFTVLNYKDKFEP------GILQLSQWFKEGK 187

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 55.8 bits (133), Expect = 7e-10
 Identities = 35/190 (18%), Positives = 66/190 (34%), Gaps = 21/190 (11%)

Query: 186 IALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIV 245
           I+  + +       T Y +L+    + P +  + + A    G    Q A+  G      +
Sbjct: 1   ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALG----AKL 56

Query: 246 RNRDDIDKLKSYLKSLGADYVF--TEEELRNISRDASIPKPKLALNC-VGGNSATNLLRT 302
                  +        GA  V    EE+L    ++ +  K    +   VG ++    L  
Sbjct: 57  IGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVGRDTWERSLDC 116

Query: 303 LVSKGVMVTYGGMSREPVQIPTS------AFIFKDITLRGHWMTRWQKENKESAERKSMM 356
           L  +G+MV++G  S     +         +      +L+G+  TR         E     
Sbjct: 117 LQRRGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYITTR--------EELTEAS 168

Query: 357 NELTEMMRTG 366
           NEL  ++ +G
Sbjct: 169 NELFSLIASG 178

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 54.2 bits (129), Expect = 2e-09
 Identities = 21/170 (12%), Positives = 47/170 (27%), Gaps = 10/170 (5%)

Query: 200 TAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK 259
           T Y    +   L PG V    G        ++        + I +  N+D   + K +  
Sbjct: 15  TGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA 74

Query: 260 SLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTY--GGMSR 317
           +   +     + ++ +  + +      +  C+G             KG  V+   G  + 
Sbjct: 75  TECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAAS 134

Query: 318 EPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGK 367
                     +    T +G              +    + +L     + K
Sbjct: 135 GEEIATRPFQLVTGRTWKGTAFG--------GWKSVESVPKLVSEYMSKK 176

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 4e-09
 Identities = 36/189 (19%), Positives = 56/189 (29%), Gaps = 51/189 (26%)

Query: 77  VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGF 136
           V  + G PL +  +E   +   + HEV +K++   V   D  T+ G  P     P + G 
Sbjct: 11  VAWEAGKPLSIEEIE---VAPPKAHEVRIKIIATAVCHTDAYTLSGADPE-GCFPVILGH 66

Query: 137 EGVGEVVEVGSDVSSLAVGDHVI---------------------------------PDTQ 163
            G G V  VG  V+ L  GD VI                                 PD  
Sbjct: 67  LGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGT 126

Query: 164 H--------------LGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYN 209
                            T+  Y       + K+   I + E      +     +  +  +
Sbjct: 127 SRFTCKGKTILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEINKAFELMH 186

Query: 210 SLSPGDVVI 218
           S      V+
Sbjct: 187 SGKSIRTVV 195

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 53.1 bits (126), Expect = 5e-09
 Identities = 31/152 (20%), Positives = 56/152 (36%), Gaps = 5/152 (3%)

Query: 200 TAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK 259
            +   L+          V+  GA    G   + +    G   +    NR+  D    YLK
Sbjct: 10  LSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAAD----YLK 65

Query: 260 SLGADYVFTEEELRNISRDASIPK-PKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSRE 318
            LGA  V + E++ + +  A   +  + A++ VGG    +LL  +   G +   G     
Sbjct: 66  QLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGGG 125

Query: 319 PVQIPTSAFIFKDITLRGHWMTRWQKENKESA 350
            V      FI + ++L G        + + + 
Sbjct: 126 EVPATVYPFILRGVSLLGIDSVYCPMDVRAAV 157

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 51.1 bits (121), Expect = 3e-08
 Identities = 28/171 (16%), Positives = 60/171 (35%), Gaps = 11/171 (6%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPT------ 129
           +   + G PL +  +    +   +  +V++K+  A V  +D++  QG +           
Sbjct: 4   VRLVEIGKPLSLQEIG---VPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGV 60

Query: 130 -LPAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIAL 188
            LP   G E  G++ EVG +V   + GD V  +         Y +   + L   P+ + +
Sbjct: 61  KLPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGI 120

Query: 189 TEISGITSNPCT-AYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWG 238
                         Y+ +     + P          +    + ++  +  G
Sbjct: 121 NFDGAYAEYVIVPHYKYMYKLRRVKPMITKTMKLEEANEAIDNLENFKAIG 171

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} Length = 162

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

 Score = 50.6 bits (120), Expect = 3e-08
 Identities = 26/163 (15%), Positives = 55/163 (33%), Gaps = 12/163 (7%)

Query: 76  LVYNQHGTP--LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAV 133
           L   ++     + V T+  E L    K  V++K+  + +N  D    +    I    P +
Sbjct: 7   LQAEKNADDVSVHVKTISTEDL---PKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLI 63

Query: 134 PGFEGVGEVVE---VGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTE 190
            G +  G VV             +           G    Y     D L+ +P++++L E
Sbjct: 64  LGIDAAGTVVSSNDPRFAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKE 123

Query: 191 ISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQI 233
                        +  +    +  D++     N   G+ ++++
Sbjct: 124 AMVDQLLTIVDREVSLEETPGALKDILQ----NRIQGRVIVKL 162

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 50.8 bits (120), Expect = 3e-08
 Identities = 38/177 (21%), Positives = 61/177 (34%), Gaps = 11/177 (6%)

Query: 190 EISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD 249
           E +    +  TAY  LK      PG+ V+   A  A G   +Q+AR  G      V    
Sbjct: 5   EAAAFPVSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMG----LRVLAAA 59

Query: 250 DIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVM 309
              +  +   +LGA+   T  E+   ++             V G      L  L   G +
Sbjct: 60  SRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLV---LEVRGKEVEESLGLLAHGGRL 116

Query: 310 VTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTG 366
           V  G    E   IP    + +++ + G W+T   +E     E    +  L   +   
Sbjct: 117 VYIGAAEGEVAPIPPLRLMRRNLAVLGFWLTPLLREGALVEE---ALGFLLPRLGRE 170

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 50.0 bits (118), Expect = 6e-08
 Identities = 47/169 (27%), Positives = 68/169 (40%), Gaps = 34/169 (20%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
            V  Q   PL++  VE  T+      EV+V++    V   D++   G +P+KP LP +PG
Sbjct: 4   AVVEQFKEPLKIKEVEKPTI---SYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPG 60

Query: 136 FEGVGEVVEVGSDVSSLAVGDHV---------------------------IPDTQHLGTW 168
            EGVG V EVG  V+ L VGD V                                  G +
Sbjct: 61  HEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGY 120

Query: 169 RNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVV 217
             Y +   D ++K+P +  + E+  +        RMLK       G VV
Sbjct: 121 AEYCRAAADYVVKIPDNTII-EVQPLEKINEVFDRMLK---GQINGRVV 165

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 49.5 bits (117), Expect = 1e-07
 Identities = 30/190 (15%), Positives = 50/190 (26%), Gaps = 51/190 (26%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
            V  +   PL +  +E +       +E+ +K++   V   D+  +      K   P V G
Sbjct: 12  AVAWEANKPLVIEEIEVDVP---HANEIRIKIIATGVCHTDLYHLF-EGKHKDGFPVVLG 67

Query: 136 FEGVGEVVEVGSDVSSLAVGDHVIPDTQH------------------------------- 164
            EG G V  VG  V+    G+ VIP                                   
Sbjct: 68  HEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPK 127

Query: 165 ----------------LGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDY 208
                             T+  Y   N   + K+   + L E         +    +   
Sbjct: 128 ETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLESVNDAIDLM 187

Query: 209 NSLSPGDVVI 218
                   V+
Sbjct: 188 KHGKCIRTVL 197

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} Length = 152

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 48.3 bits (114), Expect = 2e-07
 Identities = 32/151 (21%), Positives = 55/151 (36%), Gaps = 10/151 (6%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
            V N+  T      V+  +++ + + +V+V++  + VN  D         I  T P VPG
Sbjct: 7   FVVNKTETEF-TAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPG 65

Query: 136 FEGVGEVVEVGSDVSSLAVGDHVIPDTQ-----HLGTWRNYGKFNHDVLMKVPKDIALTE 190
            +  G VV           GD VI         H G +  Y + + + L+ +PK +    
Sbjct: 66  IDLAGVVVSSQHP--RFREGDEVIATGYEIGVTHFGGYSEYARLHGEWLVPLPKGLE-RI 122

Query: 191 ISGITSNPCTAYRMLKDYNSLSPGDVVIQNG 221
              I+               L  G  V++  
Sbjct: 123 AQEISLAELPQALKRILRGELR-GRTVVRLA 152

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (114), Expect = 3e-07
 Identities = 27/178 (15%), Positives = 60/178 (33%), Gaps = 38/178 (21%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
           +    H         + +       H++ +K+    V  +DI+   G +     +P V G
Sbjct: 10  IAIQSHEDWKNPKKTKYD-PKPFYDHDIDIKIEACGVCGSDIHCAAGHWG-NMKMPLVVG 67

Query: 136 FEGVGEVVEVGSDVSS-LAVGDHV----------------------------------IP 160
            E VG+VV++G   +S L VG  V                                    
Sbjct: 68  HEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYED 127

Query: 161 DTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVI 218
                G + NY + +   ++ +P++I +  +    +    A+  ++  + +     ++
Sbjct: 128 GYVSQGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEAFERMEKGD-VRYRFTLV 184

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 131

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 46.7 bits (110), Expect = 3e-07
 Identities = 27/132 (20%), Positives = 44/132 (33%), Gaps = 15/132 (11%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
            V  + G PL +V +        ++ EVV+++    +N AD     G Y  +   P +PG
Sbjct: 4   WVLKRLGGPLELVDLPEPEA---EEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPG 60

Query: 136 FEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGIT 195
            E VG V                       G            L+ +P+   +       
Sbjct: 61  MEVVGVVE------------GRRYAALVPQGGLAERVAVPKGALLPLPEGRPVVGPVFPF 108

Query: 196 SNPCTAYRMLKD 207
           +    A+R L D
Sbjct: 109 AEAEAAFRALLD 120

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 47.3 bits (111), Expect = 4e-07
 Identities = 23/173 (13%), Positives = 43/173 (24%), Gaps = 17/173 (9%)

Query: 200 TAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK 259
           T +    +   + PG      G  +     V+        + I +  N           K
Sbjct: 15  TGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLN----PDKFEKAK 70

Query: 260 SLGADYVF----TEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTY-GG 314
             GA          E +  +    +      +L CVG             KG  V+   G
Sbjct: 71  VFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVG 130

Query: 315 MSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGK 367
            +           +    T +G              + K  + ++ +     K
Sbjct: 131 WTDLHDVATRPIQLIAGRTWKGSMFG--------GFKGKDGVPKMVKAYLDKK 175

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 46.9 bits (110), Expect = 7e-07
 Identities = 22/170 (12%), Positives = 45/170 (26%), Gaps = 10/170 (5%)

Query: 200 TAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK 259
           T Y        ++ G      G        ++        + I +  N+D   K K    
Sbjct: 15  TGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA 74

Query: 260 SLGADYVFTEEELRNISRDASIPKPKLALNCVGG--NSATNLLRTLVSKGVMVTYGGMSR 317
           +   +    ++ ++ +  + S      +   +G      T L     + GV V  G    
Sbjct: 75  TECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPD 134

Query: 318 EPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGK 367
                     +    T +G              + K  + +L       K
Sbjct: 135 SQNLSMNPMLLLSGRTWKGAIFG--------GFKSKDSVPKLVADFMAKK 176

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 46.9 bits (110), Expect = 7e-07
 Identities = 25/167 (14%), Positives = 49/167 (29%), Gaps = 33/167 (19%)

Query: 85  LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQG--VYPIKPTLPAVPGFEGVGEV 142
           LR+           ++ EV+++M    +  +D++  +   +       P V G E  G V
Sbjct: 13  LRLEQRPIPEP---KEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTV 69

Query: 143 VEVGSDVSSLAVGDHVI---------------------------PDTQHLGTWRNYGKFN 175
           V+VG +V  L  GD V                                  G    Y    
Sbjct: 70  VKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHA 129

Query: 176 HDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGA 222
            D   K+P +  + ++   +          +        + +    +
Sbjct: 130 ADFCHKLPDNCNVKQLVTHSFKLEQTVDAFEAAR-KKADNTIKVMIS 175

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 177

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 46.8 bits (110), Expect = 8e-07
 Identities = 28/154 (18%), Positives = 54/154 (35%), Gaps = 6/154 (3%)

Query: 200 TAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK 259
                L+D         ++  GA+   G   + +    G + + +       +    YLK
Sbjct: 18  LCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHE----YLK 73

Query: 260 SLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREP 319
           SLGA  V   +E    SR         A++ VG      +L  +   G +   G      
Sbjct: 74  SLGASRVLPRDEF-AESRPLEKQVWAGAIDTVGDKVLAKVLAQMNYGGCVAACGLAGGFT 132

Query: 320 VQIPTSAFIFKDITLRG-HWMTRWQKENKESAER 352
           +      FI +++ L+G   +    +   ++ +R
Sbjct: 133 LPTTVMPFILRNVRLQGVDSVMTPPERRAQAWQR 166

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 45.3 bits (106), Expect = 2e-06
 Identities = 30/172 (17%), Positives = 54/172 (31%), Gaps = 16/172 (9%)

Query: 200 TAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK 259
           T      +   ++P    +  GA  A G + +  A+  G   I  V   +   +L+   K
Sbjct: 15  TGAGACINALKVTPASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVE--SRLELA-K 70

Query: 260 SLGADYVF--TEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLV-SKGVMVTYG-GM 315
            LGA +V     ++     ++ +      AL   G           +   G +   G   
Sbjct: 71  QLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQ 130

Query: 316 SREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGK 367
                Q   +  +    T+ G            S   K  + EL  + + GK
Sbjct: 131 LGTTAQFDVNDLLLGGKTILGVVEG--------SGSPKKFIPELVRLYQQGK 174

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 45.7 bits (107), Expect = 2e-06
 Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 7/146 (4%)

Query: 200 TAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK 259
           TAY    +Y     G  V+  GA    G   + IAR  G + + ++    +  KL   + 
Sbjct: 15  TAYHAFDEYPESFAGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIG 73

Query: 260 SLGADYVFTEEELRNISRDASIPKPKLA---LNCVGGNSATNLLRTLVSKGVMVTYGGMS 316
           +                    I   + A   L   G + A      L+ +G   +  G++
Sbjct: 74  ADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVA 133

Query: 317 REPVQIPTSAF---IFKDITLRGHWM 339
                +P   +   + K+ T +G W+
Sbjct: 134 VPQDPVPFKVYEWLVLKNATFKGIWV 159

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} Length = 146

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

 Score = 44.9 bits (105), Expect = 2e-06
 Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 8/135 (5%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
           L+  Q      + +V+    + + + +V V +  + +N  D   I G   I    P +PG
Sbjct: 4   LLLEQQDGKT-LASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMIPG 62

Query: 136 FEGVGEVVEVGSDVSSLAVGDHVIPDTQ-----HLGTWRNYGKFNHDVLMKVPKDIALTE 190
            +  G V            G  V+         H G      +   D L+ +P+  A  E
Sbjct: 63  IDFAGTVRTSEDPR--FHAGQEVLLTGWGVGENHWGGLAEQARVKGDWLVAMPQGQAAKE 120

Query: 191 ISGITSNPCTAYRML 205
           IS   +       + 
Sbjct: 121 ISLSEAPNFAEAIIN 135

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 44.1 bits (103), Expect = 5e-06
 Identities = 20/170 (11%), Positives = 54/170 (31%), Gaps = 11/170 (6%)

Query: 200 TAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK 259
           T Y    +   ++PG      G        ++        + I +  ++D   K      
Sbjct: 14  TGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGA 73

Query: 260 SLGADYVFTEEELRNISRDASIPKPKLALNCVG-GNSATNLLRTLVSKGVMVTYGGMSRE 318
           +   +    ++ +  +  + +      A+ C G   +  N L++      +    G++  
Sbjct: 74  TECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASP 133

Query: 319 PVQIPTSAFIF-KDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGK 367
             ++P    +     +L+G     ++ E          ++ L +     K
Sbjct: 134 NERLPLDPLLLLTGRSLKGSVFGGFKGEE---------VSRLVDDYMKKK 174

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score = 43.7 bits (102), Expect = 1e-05
 Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 8/110 (7%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPG 135
            V  +   PL + T+        + HEV +K+L + +  +D + ++ + P K   P + G
Sbjct: 12  AVAWEPHKPLSLETITVAPP---KAHEVRIKILASGICGSDSSVLKEIIPSKF--PVILG 66

Query: 136 FEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNY---GKFNHDVLMKV 182
            E VG V  +G+ V+ +  GD VIP                 N      +
Sbjct: 67  HEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDM 116

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} Length = 147

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

 Score = 43.1 bits (100), Expect = 1e-05
 Identities = 34/150 (22%), Positives = 60/150 (40%), Gaps = 9/150 (6%)

Query: 73  ANKLVYNQHGTP--LRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTL 130
           A ++ +++HG P  L+ V           ++E+ V+     +N  D     G+YP  P+L
Sbjct: 1   ATRIEFHKHGGPEVLQAVEFTPADP---AENEIQVENKAIGINFIDTYIRSGLYP-PPSL 56

Query: 131 PAVPGFEGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALT- 189
           P+  G E  G V +VGS V  +  GD V+     LG + +      D    +P  I +  
Sbjct: 57  PSGLGTEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNIIADKAAILPAAIKVDV 116

Query: 190 -EISGITSNPCTAYRMLKDYNSLSPGDVVI 218
            E              + +    + G  ++
Sbjct: 117 AEQQKYPLKDAQRAHEILESR-ATQGSSLL 145

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 42.8 bits (99), Expect = 1e-05
 Identities = 31/177 (17%), Positives = 57/177 (32%), Gaps = 23/177 (12%)

Query: 198 PC---TAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKL 254
            C   T YR ++  + L P   ++  GA    G   +QIA+     +   +   D  ++ 
Sbjct: 10  TCSGITTYRAVRKAS-LDPTKTLLVVGAGGGLGTMAVQIAKAV---SGATIIGVDVREEA 65

Query: 255 KSYLKSLGADYVF--TEEELRNISRDASIPKPKLALNCVGGNSAT--NLLRTLVSKGVMV 310
               K  GADYV   + ++     R  +  K   A+  +  +  T     + L  +G  V
Sbjct: 66  VEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYV 125

Query: 311 TYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGK 367
              G+    +          +I   G  +                   +  +   GK
Sbjct: 126 MV-GLFGADLHYHAPLITLSEIQFVGSLVGNQS-----------DFLGIMRLAEAGK 170

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 36/169 (21%), Positives = 59/169 (34%), Gaps = 32/169 (18%)

Query: 77  VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQG--VYPIKPTLPAVP 134
             +++  PLR+  V+   L    + +V+V++  A V   D++ +QG     ++P LP   
Sbjct: 4   RLHEYNKPLRIEDVDYPRLEG--RFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTL 61

Query: 135 GFEGVGEVVEVGSDVSSLAVGDHVI---------------------PDTQHLGTWRNYGK 173
           G E VG + EV   V  L  GD VI                      + +  G   + G 
Sbjct: 62  GHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGF 121

Query: 174 FNHDVLM-----KVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVV 217
                       K+PKD+ +                L+       G  V
Sbjct: 122 AEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLERLEKGE--VLGRAV 168

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 36/191 (18%), Positives = 55/191 (28%), Gaps = 29/191 (15%)

Query: 75  KLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVP 134
             V    G    +  ++   +   Q  EV+VK++   +   D+            LPAV 
Sbjct: 6   AAVTPCKGADFELQALK---IRQPQGDEVLVKVVATGMCHTDLIVRD--QKYPVPLPAVL 60

Query: 135 GFEGVGEVVEVGSDVSSLAVGDHVIPDTQHL-----------------------GTWRNY 171
           G EG G +  +G +V+ L VGDHV+    +                        G     
Sbjct: 61  GHEGSGIIEAIGPNVTELQVGDHVVLSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEG 120

Query: 172 GKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVI 231
                     V  D    + S  T         +K         +V          Q  I
Sbjct: 121 NHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDFPFDQLVKFYAF-DEINQAAI 179

Query: 232 QIARHWGLKTI 242
              +   LK I
Sbjct: 180 DSRKGITLKPI 190

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 42.6 bits (99), Expect = 3e-05
 Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 8/103 (7%)

Query: 77  VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGF 136
           +  + G+PL +  +E   ++  +  EV ++++   V P DIN        K   P V G 
Sbjct: 13  IAWKTGSPLCIEEIE---VSPPKACEVRIQVIATCVCPTDINATD--PKKKALFPVVLGH 67

Query: 137 EGVGEVVEVGSDVSSLAVGDHVIP---DTQHLGTWRNYGKFNH 176
           E  G V  VG  V++   GD VIP                 N 
Sbjct: 68  ECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNL 110

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 42.1 bits (98), Expect = 3e-05
 Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 5/104 (4%)

Query: 77  VYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGF 136
           V  +   P  +  VE       + HEV +KM+   +  +D + + G       + A    
Sbjct: 13  VLWEEKKPFSIEEVEVAPP---KAHEVRIKMVATGICRSDDHVVSGTLVTPLPVIAGH-- 67

Query: 137 EGVGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLM 180
           E  G V  +G  V+++  GD VIP            K       
Sbjct: 68  EAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFC 111

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 41.2 bits (95), Expect = 5e-05
 Identities = 27/172 (15%), Positives = 49/172 (28%), Gaps = 19/172 (11%)

Query: 198 PC---TAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKL 254
            C   T Y+ LK  N   PG  V  +G     G   +Q AR  GL    I  +   ++  
Sbjct: 10  LCAGVTVYKGLKQTN-ARPGQWVAISGIGG-LGHVAVQYARAMGLHVAAIDIDDAKLELA 67

Query: 255 KSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGG 314
           +    S        +E+     +        + +  V  ++    +      G +   G 
Sbjct: 68  RKLGAS--LTVNARQEDPVEAIQRDIGGAHGVLVTAVSNSAFGQAIGMARRGGTIALVGL 125

Query: 315 MSREPVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTG 366
                   P    + K + + G  +                + E  +    G
Sbjct: 126 PP-GDFPTPIFDVVLKGLHIAGSIVGTRA-----------DLQEALDFAGEG 165

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 41.0 bits (95), Expect = 7e-05
 Identities = 20/143 (13%), Positives = 42/143 (29%), Gaps = 4/143 (2%)

Query: 200 TAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYL 258
           T Y        + PG   +  G     G +VI   +  G  + I I  N+D  +K  +  
Sbjct: 16  TGYGAAVKTGKVKPGSTCVVFGLGG-VGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVG 74

Query: 259 KSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNSAT-NLLRTLVSKGVMVTYGGMSR 317
            +       + + +  +  + +          +G      + L +           G+  
Sbjct: 75  ATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPP 134

Query: 318 EPVQIPTSAFI-FKDITLRGHWM 339
               +     + F   T +G   
Sbjct: 135 SAKMLTYDPMLLFTGRTWKGCVF 157

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score = 38.0 bits (87), Expect = 6e-04
 Identities = 23/169 (13%), Positives = 52/169 (30%), Gaps = 10/169 (5%)

Query: 200 TAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK 259
           + Y    +   ++PG      G        +I        + I I  N +   K K+   
Sbjct: 15  SGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA 74

Query: 260 SLGADYVFTEEELRNISRDASIPKPKLALNCVGGNS-ATNLLRTLVSKGVMVTYGGMSRE 318
           +   +    ++ ++++  + +      +L+C G        +   V      T  G   +
Sbjct: 75  TDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVD 134

Query: 319 PVQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGK 367
            + IPT   I    ++ G +            +    +  L    +  K
Sbjct: 135 EMTIPTVDVIL-GRSINGTFFG--------GWKSVDSVPNLVSDYKNKK 174

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 32/177 (18%), Positives = 54/177 (30%), Gaps = 39/177 (22%)

Query: 76  LVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPAD--INTIQGVYPIKPTLPAV 133
           LV   HG     + +EN  +     +EV+++M    +  +D        +       P V
Sbjct: 11  LVV--HGP--GDLRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMV 66

Query: 134 PGFEGVGEVVEVGSDVSSLAVGD---------------------HVIPDTQHLGT----- 167
            G E  G V +VGS V  L  GD                     ++ P      T     
Sbjct: 67  LGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDG 126

Query: 168 -WRNYGKFNHDVLMKVPKDIALTEISGIT-SNPCTAYRMLKDYNSLSPGD-VVIQNG 221
               + K N     K+P ++               A+   K       G  ++++  
Sbjct: 127 NLCRFYKHNAAFCYKLPDNVKPLVTHRFPLEKALEAFETFK----KGLGLKIMLKCD 179

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	405
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	100.0
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.98
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.97
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.97
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.97
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.97
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.97
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.97
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.97
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.97
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.97
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	99.96
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.96
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.96
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.96
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.96
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.96
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.96
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.96
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	99.96
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	99.95
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.95
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.95
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.95
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.95
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	99.95
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.95
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.94
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	99.94
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.94
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.94
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.94
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	99.93
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.93
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.93
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.93
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.93
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.93
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.93
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.92
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.92
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.92
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.92
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.92
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.92
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.92
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.91
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.91
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.91
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.9
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.9
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.87
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	99.77
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.75
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.63
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.92
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	97.86
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	97.79
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	97.77
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	97.76
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.75
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	97.74
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	97.73
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	97.73
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	97.73
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.68
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	97.65
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	97.63
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.62
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	97.62
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	97.58
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	97.58
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.56
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.55
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	97.55
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	97.54
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	97.51
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.49
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	97.48
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	97.48
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	97.48
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	97.47
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	97.41
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	97.41
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	97.4
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	97.37
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	97.35
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	97.33
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	97.33
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	97.32
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.32
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	97.31
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	97.31
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	97.31
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	97.28
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	97.27
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	97.27
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	97.27
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	97.27
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.25
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	97.24
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	97.23
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	97.22
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	97.21
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	97.2
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	97.2
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	97.18
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	97.18
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	97.18
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	97.17
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	97.15
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	97.1
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	97.09
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	97.06
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	97.05
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.05
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	97.03
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.94
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	96.94
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.92
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	96.9
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	96.8
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	96.79
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	96.79
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	96.74
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	96.73
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	96.68
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	96.68
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.68
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	96.66
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	96.65
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	96.53
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.52
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.38
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	96.38
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	96.33
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	96.19
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	96.09
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	96.07
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	96.05
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	96.04
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	96.03
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	96.02
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	95.96
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	95.94
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.83
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	95.67
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	95.55
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	95.54
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	95.48
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.44
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	95.38
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	95.37
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	95.36
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	95.35
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	95.34
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	95.24
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	95.14
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	95.14
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	95.11
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	95.11
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	95.1
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	95.08
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	95.02
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	95.0
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	94.99
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	94.98
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	94.97
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	94.81
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	94.71
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	94.66
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.49
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	94.43
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	94.42
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.35
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	94.32
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	94.29
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	94.28
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.17
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	94.12
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	94.11
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	94.06
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	94.04
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	94.0
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	93.95
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	93.89
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	93.71
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	93.67
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	93.65
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	93.6
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	93.48
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	93.38
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	93.34
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	93.34
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	93.22
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	93.12
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.09
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	92.99
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	92.98
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	92.98
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	92.97
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	92.97
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	92.95
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.93
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	92.88
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	92.87
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	92.83
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	92.71
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	92.7
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	92.65
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	92.62
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.61
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	92.55
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	92.53
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	92.47
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	92.45
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	92.39
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	92.36
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	92.12
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	92.09
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	91.99
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	91.92
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	91.91
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	91.9
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	91.73
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	91.72
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	91.63
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	91.62
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.51
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	91.4
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.34
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	91.32
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	91.3
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	91.24
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	91.08
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	91.05
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	91.0
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.68
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	90.61
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	90.55
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	90.44
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	90.35
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	90.35
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	90.29
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	90.27
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	90.07
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	90.0
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	89.87
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	89.8
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	89.79
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	89.66
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	89.5
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	89.49
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	89.49
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	89.24
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	89.24
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	88.86
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	88.85
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	88.74
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	88.59
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	88.56
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	88.54
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	88.54
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	88.44
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	88.02
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	87.99
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	87.94
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	87.58
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	87.54
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	87.28
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	86.94
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	86.87
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	86.83
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	86.67
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	86.62
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	86.61
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	86.59
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	86.38
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	86.33
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	86.32
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	86.24
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	85.87
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	85.62
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	85.53
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.48
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	85.46
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	85.03
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	84.74
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	84.58
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	84.53
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	84.38
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	84.33
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	83.96
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	83.84
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	83.61
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	83.6
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	83.55
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	83.52
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	83.1
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	82.76
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	82.74
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	82.7
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	82.48
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	82.44
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	82.17
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	82.15
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	82.03
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	81.9
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	81.82
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	81.42
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	81.38
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	81.3
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	80.97
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	80.92
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	80.88
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	80.74
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	80.54
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	80.48
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	80.33
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	80.32
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	80.23
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	80.08
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	80.03

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-33  Score=233.69  Aligned_cols=148  Identities=22%  Similarity=0.332  Sum_probs=139.0

Q ss_pred             ceeEEEEccCCCCccceEee-eecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCC
Q psy2960          72 LANKLVYNQHGTPLRVVTVE-NETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVS  150 (405)
Q Consensus        72 ~~~a~~~~~~g~~~~~l~~~-~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~  150 (405)
                      .|||++++++|+| +.+++. +.|.|+|++|||||||.++|||++|++.+.|.++..+.+|.++|||++|+|+++|++++
T Consensus         2 ~MkAv~~~~~G~p-~~l~~~~~~~~P~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~~vG~~v~   80 (150)
T d1yb5a1           2 LMRAVRVFEFGGP-EVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNAS   80 (150)
T ss_dssp             EEEEEEESSCSSG-GGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTCT
T ss_pred             ceeEEEEEccCCc-ceEEEEeecCCCCCCCCeEEEEEEEecCcccchhhhcCCcCccccccccCccceeeeeEeecceee
Confidence            5999999999988 568774 68999999999999999999999999999998877778899999999999999999999


Q ss_pred             CCCCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEe
Q psy2960         151 SLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQN  220 (405)
Q Consensus       151 ~~~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~  220 (405)
                      +|++||||++....+|+|+||+.+++++++++|+++++++||+++++++|+|+++...+..++|++|||.
T Consensus        81 ~~~vGdrV~~~~~~~G~~ae~~~v~~~~~~~iP~~ls~~~Aa~~~~~~~ta~~~~~~~g~~~~G~~vliL  150 (150)
T d1yb5a1          81 AFKKGDRVFTSSTISGGYAEYALAADHTVYKLPEKLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL  150 (150)
T ss_dssp             TCCTTCEEEESCCSSCSSBSEEEEEGGGEEECCTTCCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             ccccCccccccccccccccccccccccccccccCCCCHHHHHHhhhhhhhehhhheEEcCcccCCEEEEC
Confidence            9999999998877789999999999999999999999999999999999999999998999999999984

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.98  E-value=3.2e-32  Score=232.78  Aligned_cols=148  Identities=25%  Similarity=0.383  Sum_probs=134.3

Q ss_pred             CcccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcC
Q psy2960          68 GFSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGS  147 (405)
Q Consensus        68 ~~~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~  147 (405)
                      ++|+||||++++++|++   ++++++|.|+|++|||||||.++|||++|++.+.|.++....+|.++|||++|+|+++|+
T Consensus         1 ~~P~tMkA~v~~~~g~p---l~l~evp~P~~~~~evlVkv~a~gic~~D~~~~~G~~~~~~~~P~i~GhE~~G~V~~~G~   77 (175)
T d1llua1           1 TLPQTMKAAVVHAYGAP---LRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGHEGVGYVAAVGS   77 (175)
T ss_dssp             CCCSEEEEEEBCSTTSC---CEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECT
T ss_pred             CcchhcEEEEEEeCCCC---CEEEEeECCCCCCCEEEEEEEEecCcccchhhhccCccccccCCcCCCCcceEEEEEeCC
Confidence            47999999999999987   899999999999999999999999999999999998876667899999999999999999


Q ss_pred             CCCCCCCCCEEEecC---------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHH
Q psy2960         148 DVSSLAVGDHVIPDT---------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCT  200 (405)
Q Consensus       148 ~v~~~~~GdrV~~~~---------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~t  200 (405)
                      +++++++||||+..+                           ..+|+|+||+.+++++++++|++++++.++++.+++.|
T Consensus        78 ~v~~~~~GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~~G~~~~gg~aey~~v~~~~~~~iPd~l~~~~a~~~~~~~~t  157 (175)
T d1llua1          78 GVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGYSVNGGYAEYVLADPNYVGILPKNVKATIHPGKLDDINQ  157 (175)
T ss_dssp             TCCSCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEECTTTSEECCTTCCCCEEEECGGGHHH
T ss_pred             CccccccCCEEEeccccccCCccccccCCcccccccccccccccccccceEEEechHHEEECCCCCChhHHHHHHhHHHH
Confidence            999999999998542                           23479999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCCCCEEEEe
Q psy2960         201 AYRMLKDYNSLSPGDVVIQN  220 (405)
Q Consensus       201 a~~al~~~~~~~~g~~VLI~  220 (405)
                      ++++++.  +..+|++|||.
T Consensus       158 ~~~~~~~--g~~~G~~VLVl  175 (175)
T d1llua1         158 ILDQMRA--GQIEGRIVLEM  175 (175)
T ss_dssp             HHHHHHT--TCCSSEEEEEC
T ss_pred             HHHHHHh--CCCCCCEEEeC
Confidence            9998853  44479999984

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.97  E-value=3e-31  Score=229.57  Aligned_cols=180  Identities=41%  Similarity=0.663  Sum_probs=159.0

Q ss_pred             CChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEe-CCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc
Q psy2960         186 IALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQN-GANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD  264 (405)
Q Consensus       186 ~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~-ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~  264 (405)
                      +|++|||++|++++|||++|.+.++++||++|+|+ ||+|++|++++|+||++|++||+++++.++.+++.+.++++|++
T Consensus         1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad   80 (189)
T d1gu7a2           1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT   80 (189)
T ss_dssp             CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhcccc
Confidence            68999999999999999999998999999998886 78899999999999999999999999888888889999999999


Q ss_pred             EEeChhh-----HHH-Hhhhc--CCCCCcEEEECCCchhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEE
Q psy2960         265 YVFTEEE-----LRN-ISRDA--SIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRG  336 (405)
Q Consensus       265 ~v~~~~d-----~~~-i~~~t--~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g  336 (405)
                      +++++++     +.+ +++.+  .++++|+||||+|++.+..++++|+++|+++.+|.....+.+++...++.|++++.|
T Consensus        81 ~vi~~~~~~~~~~~~~v~~~~~~~g~~vdvv~D~vg~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~l~~k~~~i~G  160 (189)
T d1gu7a2          81 QVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAG  160 (189)
T ss_dssp             EEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHHHHHHHHTSCTTCEEEECCCCSSCCEEECHHHHHHSCCEEEE
T ss_pred             EEEeccccchhHHHHHHHHHHhhccCCceEEEECCCcchhhhhhhhhcCCcEEEEECCccCCCccCcHHHHHHCCcEEEE
Confidence            9998753     222 44443  377899999999999999999999999999999987777777888888899999999


Q ss_pred             EecchhhhhhccHHHHHHHHHHHHHHHHcCc
Q psy2960         337 HWMTRWQKENKESAERKSMMNELTEMMRTGK  367 (405)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  367 (405)
                      +++..+...++  +...+.++++.+++++|+
T Consensus       161 ~~~~~~~~~~~--~~~~~~~~~l~~l~~~Gk  189 (189)
T d1gu7a2         161 FWVTELLKNNK--ELKTSTLNQIIAWYEEGK  189 (189)
T ss_dssp             CCHHHHHTTCH--HHHHHHHHHHHHHHHHTC
T ss_pred             EEehHhhhhCH--HHHHHHHHHHHHHHHcCC
Confidence            99887766553  777889999999999986

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=9e-31  Score=216.94  Aligned_cols=143  Identities=22%  Similarity=0.355  Sum_probs=130.0

Q ss_pred             eEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCCC
Q psy2960          74 NKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSLA  153 (405)
Q Consensus        74 ~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~~  153 (405)
                      +.+.++++|.| +.|++++.|.|+|++|||||||.|++||++|++++.|.++. ..+|.++|||++|+|+++|+++++|+
T Consensus         2 ~~i~~~~~G~p-e~l~~~e~~~P~p~~~eVlVkv~a~~in~~D~~~~~G~~~~-~~~p~~~G~e~~G~V~~vG~~v~~~~   79 (147)
T d1qora1           2 TRIEFHKHGGP-EVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPP-PSLPSGLGTEAAGIVSKVGSGVKHIK   79 (147)
T ss_dssp             EEEEBSSCCSG-GGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCC-SSSSBCCCSCEEEEEEEECTTCCSCC
T ss_pred             eEEEEcccCCC-ceeEEEEecCCCCCCCEEEEEEEEecccceeeeeecCCCCC-Ccceeeeccccccceeeeeeeccccc
Confidence            56889999998 67999999999999999999999999999999999998875 47899999999999999999999999


Q ss_pred             CCCEEEecCCCCCcccceEeecccceEEcCCCCChhhh--ccCCCcHHHHHHHHHhhcCCCCCCEEEE
Q psy2960         154 VGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEI--SGITSNPCTAYRMLKDYNSLSPGDVVIQ  219 (405)
Q Consensus       154 ~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~A--a~~~~~~~ta~~al~~~~~~~~g~~VLI  219 (405)
                      +||||+......|+|+||+.++.+.++++|+++++++|  +++++...|+++++.+ .++++|++|||
T Consensus        80 vGdrV~~~~~~~G~~ae~~~v~~~~~~~~P~~~~~~~a~a~~~~~~~~~~~~~l~~-~~~~~G~~VLI  146 (147)
T d1qora1          80 AGDRVVYAQSALGAYSSVHNIIADKAAILPAAIKVDVAEQQKYPLKDAQRAHEILE-SRATQGSSLLI  146 (147)
T ss_dssp             TTCEEEESCCSSCCSBSEEEEEGGGEEECCTTSCCCCCGGGEEEGGGHHHHHHHHH-TTCCCBCCEEE
T ss_pred             ccceeeeeccccccceeEEEEehHHeEEcCcccchHHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEe
Confidence            99999876667899999999999999999999988754  5667788888888876 68999999998

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.97  E-value=1.1e-31  Score=229.96  Aligned_cols=145  Identities=17%  Similarity=0.209  Sum_probs=127.8

Q ss_pred             eEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCC--CCCCCCCCccceEEEEEEEcCCCCC
Q psy2960          74 NKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPI--KPTLPAVPGFEGVGEVVEVGSDVSS  151 (405)
Q Consensus        74 ~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~p~~lG~E~~G~V~~vG~~v~~  151 (405)
                      .+++++++++    ++++++|+|+|+++||||||.++|||++|++.+.+....  ...+|+++|||++|+|+++|+++++
T Consensus         3 maAVl~g~~~----l~~~e~~~P~~~~~evlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~Vv~vG~~v~~   78 (178)
T d1e3ja1           3 LSAVLYKQND----LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKH   78 (178)
T ss_dssp             EEEEEEETTE----EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCS
T ss_pred             eEEEEEcCCc----EEEEEeECCCCCCCEEEEEEEEEcccCchhhhhccCccccccccCCeeeccccceEEEecCcccCC
Confidence            3445667665    999999999999999999999999999999988864322  2367899999999999999999999


Q ss_pred             CCCCCEEEecC---------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHH
Q psy2960         152 LAVGDHVIPDT---------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRM  204 (405)
Q Consensus       152 ~~~GdrV~~~~---------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~a  204 (405)
                      |++||||+..+                           ..+|+|+||+++++++++++|+++++++||++++++.|||++
T Consensus        79 ~~~GdrV~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~a  158 (178)
T d1e3ja1          79 LKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDDGNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTVDA  158 (178)
T ss_dssp             CCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTCCCGGGEEEEEEGGGHHHH
T ss_pred             CCCCCEEEECcccccCCccccccCCccccccccceeccccccccceeeeecccceeeCCCCCCHHHHHHHHhHHHHHHHH
Confidence            99999998642                           235899999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCEEEEeCCC
Q psy2960         205 LKDYNSLSPGDVVIQNGAN  223 (405)
Q Consensus       205 l~~~~~~~~g~~VLI~ga~  223 (405)
                      +.. +++++|++|+|.||+
T Consensus       159 ~~~-~~~~~g~~VlVig~C  176 (178)
T d1e3ja1         159 FEA-ARKKADNTIKVMISC  176 (178)
T ss_dssp             HHH-HHHCCTTCSEEEEEC
T ss_pred             HHH-hCCCCCCEEEEEccc
Confidence            864 899999999999874

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=5.6e-31  Score=212.68  Aligned_cols=131  Identities=22%  Similarity=0.262  Sum_probs=122.1

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||||+++++|++   +++++.|.|+|++|||||||+|+|||++|++.+.|.++..+.+|+++|||++|+|          
T Consensus         1 MkA~~~~~~G~~---l~~~e~~~p~p~~~eVlVkv~a~gin~~D~~~~~G~~~~~~~~P~v~G~E~~G~V----------   67 (131)
T d1iz0a1           1 MKAWVLKRLGGP---LELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVV----------   67 (131)
T ss_dssp             CEEEEECSTTSC---EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEE----------
T ss_pred             CcEEEEccCCCC---CEEEEccCCCCCCCEEEEEEEEEeccccccccccccccccccceeEeeeeeEEee----------
Confidence            899999999987   8999999999999999999999999999999999998777789999999999999          


Q ss_pred             CCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEe
Q psy2960         153 AVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQN  220 (405)
Q Consensus       153 ~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~  220 (405)
                       +||||+++. .+|+|+||+.++++.++++|+++++++||++++++.|||+++.+.+  +.|++||+.
T Consensus        68 -vGd~V~~~~-~~G~~aey~~v~~~~~~~~P~~~~~~~aa~~~~~~~Ta~~al~~~g--~~g~tvl~l  131 (131)
T d1iz0a1          68 -EGRRYAALV-PQGGLAERVAVPKGALLPLPEGRPVVGPVFPFAEAEAAFRALLDRG--HTGKVVVRL  131 (131)
T ss_dssp             -TTEEEEEEC-SSCCSBSEEEEEGGGCEECCTTCCCEEEEEEGGGHHHHHHHTTCTT--CCBEEEEEC
T ss_pred             -ccceEEEEe-ccCccceeeeeCHHHeEEccCCCCHHHHHHHHHHHHHHHHHHHhcc--cCCCEEEEC
Confidence             399999984 5799999999999999999999999999999999999999998765  459999874

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.97  E-value=7.9e-31  Score=228.35  Aligned_cols=147  Identities=19%  Similarity=0.217  Sum_probs=134.9

Q ss_pred             ccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCC
Q psy2960          70 SYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDV  149 (405)
Q Consensus        70 ~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v  149 (405)
                      ++++||+++.+++.|   ++++++|.|+|+++||||||.|+|||++|++.+.|..+. ..+|.++|||++|+|+++|+++
T Consensus         6 ~~~~kAav~~~~~~p---l~i~ev~~P~p~~~eVlIkv~a~giCgsD~~~~~g~~~~-~~~p~i~GhE~~G~v~~vG~~v   81 (199)
T d1cdoa1           6 VIKCKAAVAWEANKP---LVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK-DGFPVVLGHEGAGIVESVGPGV   81 (199)
T ss_dssp             CEEEEEEEBCSTTSC---CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCT-TSCSEECCCCEEEEEEEECTTC
T ss_pred             ceEEEEEEEecCCCC---cEEEEEECCCCCCCEEEEEEEEEEEecchhhhhhhcccc-cccccccccccceEEEEEcCCC
Confidence            567789999999987   999999999999999999999999999999999996543 3689999999999999999999


Q ss_pred             CCCCCCCEEEecCC-----------------------------------------------CCCcccceEeecccceEEc
Q psy2960         150 SSLAVGDHVIPDTQ-----------------------------------------------HLGTWRNYGKFNHDVLMKV  182 (405)
Q Consensus       150 ~~~~~GdrV~~~~~-----------------------------------------------~~G~~a~~~~v~~~~~~~i  182 (405)
                      ++|++||||+..+.                                               .+|+|+||++++++.++++
T Consensus        82 ~~~~~GdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~Ggfaey~~v~~~~~~~i  161 (199)
T d1cdoa1          82 TEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFTCKGRKVLQFLGTSTFSQYTVVNQIAVAKI  161 (199)
T ss_dssp             CSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEEETTEEEEEGGGTCCSBSEEEEEGGGEEEC
T ss_pred             ceecCCCEEEEeeeccccccccccCCCcccccccccccccccccCcccceeeccceeecccccCCceEEEEEchHHEEEC
Confidence            99999999987531                                               1389999999999999999


Q ss_pred             CCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEe
Q psy2960         183 PKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQN  220 (405)
Q Consensus       183 P~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~  220 (405)
                      |++++++++|++.+++.|++.++...+..+.|++|||.
T Consensus       162 P~~~~~~~aa~l~~~l~t~~~av~~~~~~~~G~tVlv~  199 (199)
T d1cdoa1         162 DPSVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL  199 (199)
T ss_dssp             CTTSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence            99999999999999999999999988899999999984

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.97  E-value=9.2e-31  Score=225.60  Aligned_cols=179  Identities=18%  Similarity=0.216  Sum_probs=154.0

Q ss_pred             hhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeC
Q psy2960         189 TEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT  268 (405)
Q Consensus       189 ~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~  268 (405)
                      +|||++|++++|||+++.+.+++++||+|||+||+|++|++++|+|+++|++++++++++    ++.+.++++|++++++
T Consensus         1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~----~~~~~l~~~Ga~~vi~   76 (183)
T d1pqwa_           1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD----AKREMLSRLGVEYVGD   76 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH----HHHHHHHTTCCSEEEE
T ss_pred             CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeeccc----cccccccccccccccc
Confidence            589999999999999999989999999999999999999999999999999999999664    3478899999999998


Q ss_pred             hhh--HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhh
Q psy2960         269 EEE--LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKE  345 (405)
Q Consensus       269 ~~d--~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~  345 (405)
                      +++  +.+ +++.|++.|+|++|||+|++.+..++++++++|+++.+|.....+........+.+++++.++++......
T Consensus        77 ~~~~~~~~~v~~~t~~~g~d~v~d~~g~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (183)
T d1pqwa_          77 SRSVDFADEILELTDGYGVDVVLNSLAGEAIQRGVQILAPGGRFIELGKKDVYADASLGLAALAKSASFSVVDLDLNLKL  156 (183)
T ss_dssp             TTCSTHHHHHHHHTTTCCEEEEEECCCTHHHHHHHHTEEEEEEEEECSCGGGTTTCEEEGGGGTTTCEEEECCHHHHHHH
T ss_pred             CCccCHHHHHHHHhCCCCEEEEEecccchHHHHHHHHhcCCCEEEEEccCCCCCCcccchHHHhCCcEEEEEEccceecc
Confidence            654  666 99999999999999999999999999999999999999965544433333445579999999987765544


Q ss_pred             hccHHHHHHHHHHHHHHHHcCcccCCcc
Q psy2960         346 NKESAERKSMMNELTEMMRTGKLAAPAH  373 (405)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~  373 (405)
                      .  +...++.++++.+++++|+|+|.|.
T Consensus       157 ~--~~~~~~~~~~v~~~i~~G~i~p~Pi  182 (183)
T d1pqwa_         157 Q--PARYRQLLQHILQHVADGKLEVLPV  182 (183)
T ss_dssp             C--HHHHHHHHHHHHHHHHTTSSCCCCC
T ss_pred             C--HHHHHHHHHHHHHHHHCCCCceeCC
Confidence            3  3777889999999999999998653

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.97  E-value=1.3e-30  Score=217.14  Aligned_cols=147  Identities=22%  Similarity=0.273  Sum_probs=132.4

Q ss_pred             ccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCC
Q psy2960          70 SYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDV  149 (405)
Q Consensus        70 ~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v  149 (405)
                      |++|||+++++++++ ..+++++.|.|+|++|||||||+|+|||++|++.+.|.++..+..|+++|+|++|+|++  .++
T Consensus         1 m~~~KA~v~~~~~~~-~~~~i~~v~~P~~~~~eVlVkV~a~gin~~D~~~~~g~~~~~~~~p~v~g~e~~G~v~~--~~~   77 (152)
T d1xa0a1           1 MSAFQAFVVNKTETE-FTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVS--SQH   77 (152)
T ss_dssp             CCEEEEEEEEEETTE-EEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEE--CCS
T ss_pred             CCceEEEEEEecCCc-eEEEEEEccCCCCCCCEEEEEEEEeCCChHHHHHHhhcccccccccceeeeeeeeeeec--cCC
Confidence            578999999999986 34778999999999999999999999999999999998877678899999999999998  667


Q ss_pred             CCCCCCCEEEecC-----CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeC
Q psy2960         150 SSLAVGDHVIPDT-----QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNG  221 (405)
Q Consensus       150 ~~~~~GdrV~~~~-----~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~g  221 (405)
                      +.|++||+|++..     ..+|+|+||+.+++++++++|++++ ++||+++++++||+.++...++++ |++|||.|
T Consensus        78 ~~~~~g~~v~~~~~~~~~~~~G~~aEy~~v~~~~~~~iP~~l~-~~aa~l~~a~~ta~~~~~~~~~~~-G~tVL~l~  152 (152)
T d1xa0a1          78 PRFREGDEVIATGYEIGVTHFGGYSEYARLHGEWLVPLPKGLE-RIAQEISLAELPQALKRILRGELR-GRTVVRLA  152 (152)
T ss_dssp             SSCCTTCEEEEESTTBTTTBCCSSBSEEEECGGGCEECCTTHH-HHEEEEEGGGHHHHHHHHHHTCCC-SEEEEECC
T ss_pred             CccccCCEEEEecCccccccCCCcceeeeehhhccccCCCCCC-HHHHHHHHHHHHHHHHHHHhcCCC-CCEEEEcC
Confidence            8999999998763     2369999999999999999999998 478999999999999998888886 99999986

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.97  E-value=2.6e-30  Score=224.32  Aligned_cols=147  Identities=23%  Similarity=0.284  Sum_probs=133.7

Q ss_pred             ccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCC
Q psy2960          70 SYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDV  149 (405)
Q Consensus        70 ~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v  149 (405)
                      +++|||++++++|++   ++++++|.|+|+++||||||.++|||++|++++.|.++. ..+|+++|||++|+|+++|++|
T Consensus         4 ~~~~kAav~~~~g~~---l~i~evp~P~p~~~eVLVkv~a~gic~sD~~~~~G~~~~-~~~p~v~GhE~~G~V~~vG~~V   79 (197)
T d2fzwa1           4 VIKCKAAVAWEAGKP---LSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPE-GCFPVILGHLGAGIVESVGEGV   79 (197)
T ss_dssp             CEEEEEEEBCSTTSC---CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTT-CCSSBCCCCEEEEEEEEECTTC
T ss_pred             ceEEEEEEEccCCCC---CEEEEEECCCCCCCEEEEEEEEecCCCCcHHHHcCCccc-ccccccCCcceeeEEEeecCCc
Confidence            678999999999998   999999999999999999999999999999999997654 4789999999999999999999


Q ss_pred             CCCCCCCEEEecCC-----------------------------------------------CCCcccceEeecccceEEc
Q psy2960         150 SSLAVGDHVIPDTQ-----------------------------------------------HLGTWRNYGKFNHDVLMKV  182 (405)
Q Consensus       150 ~~~~~GdrV~~~~~-----------------------------------------------~~G~~a~~~~v~~~~~~~i  182 (405)
                      +++++||||+..+.                                               ..|+|+||+++++.+++++
T Consensus        80 ~~~~~GdrV~v~~~~~cg~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~g~GgfAey~vvp~~~~~~v  159 (197)
T d2fzwa1          80 TKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFTCKGKTILHYMGTSTFSEYTVVADISVAKI  159 (197)
T ss_dssp             CSCCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGGGEEEC
T ss_pred             eecCCCCEEEEccccccccccccccCccccCccccccccccccCCccceeccCCcceecccccccceeEEEechHHEEEC
Confidence            99999999986420                                               1389999999999999999


Q ss_pred             CCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEe
Q psy2960         183 PKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQN  220 (405)
Q Consensus       183 P~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~  220 (405)
                      |+++++++||++++++.|++.++.....-+.+++|||+
T Consensus       160 p~~l~~~~aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi  197 (197)
T d2fzwa1         160 DPLIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI  197 (197)
T ss_dssp             CTTSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             CCCCCHHHHhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence            99999999999999999999998766566788999984

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.97  E-value=1.7e-30  Score=220.52  Aligned_cols=151  Identities=20%  Similarity=0.267  Sum_probs=131.1

Q ss_pred             CChhhhccCCCcHHHHHHHH---HhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcC
Q psy2960         186 IALTEISGITSNPCTAYRML---KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG  262 (405)
Q Consensus       186 ~s~~~Aa~~~~~~~ta~~al---~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg  262 (405)
                      +|++|||++|++++|||+++   .+.++.++|++|||+||+|+||.+++|+|+.+|++|+++++++++    .+.++++|
T Consensus         1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k----~~~~~~lG   76 (176)
T d1xa0a2           1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAE----HDYLRVLG   76 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTC----HHHHHHTT
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHH----HHHHHhcc
Confidence            68999999999999999665   456889999999999999999999999999999999999988776    68889999


Q ss_pred             CcEEeChhhHHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecc
Q psy2960         263 ADYVFTEEELRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMT  340 (405)
Q Consensus       263 ~~~v~~~~d~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~  340 (405)
                      +++++|+++... ..+.++++++|+|||++|++.+..++++|+++|+++.+|...+...+++...++.|++++.|+...
T Consensus        77 a~~vi~~~~~~~~~~~~~~~~gvD~vid~vgg~~~~~~l~~l~~~Griv~~G~~~g~~~~~~~~~~~~k~~~i~Gv~~~  155 (176)
T d1xa0a2          77 AKEVLAREDVMAERIRPLDKQRWAAAVDPVGGRTLATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGIDSV  155 (176)
T ss_dssp             CSEEEECC---------CCSCCEEEEEECSTTTTHHHHHHTEEEEEEEEECSCCSSSCCCCCSHHHHHTTCEEEECCSS
T ss_pred             cceeeecchhHHHHHHHhhccCcCEEEEcCCchhHHHHHHHhCCCceEEEeecccCcccCCCHHHHHHCCcEEEEEeCC
Confidence            999999876544 566778889999999999999999999999999999999877777788889999999999997543

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.96  E-value=1.3e-29  Score=215.79  Aligned_cols=143  Identities=27%  Similarity=0.452  Sum_probs=124.4

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      |||++++++|++   ++++++|.|+|++|||||||+++|||++|++.+++.......+|.++|||++|+|+++|++++++
T Consensus         1 MkA~v~~~~g~p---l~i~~v~~P~~~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~p~v~GhE~~G~Vv~vG~~v~~~   77 (171)
T d1rjwa1           1 MKAAVVEQFKEP---LKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHL   77 (171)
T ss_dssp             CEEEEBSSTTSC---CEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSC
T ss_pred             CeEEEEecCCCC---cEEEEeECCCCCCCeEEEEEEEeeccccceeeeecccccccccccccCCEEEEEEEEecccccCc
Confidence            899999999987   89999999999999999999999999999999987655556789999999999999999999999


Q ss_pred             CCCCEEEecC---------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHH
Q psy2960         153 AVGDHVIPDT---------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRML  205 (405)
Q Consensus       153 ~~GdrV~~~~---------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al  205 (405)
                      ++||||+..+                           ..+|+|+||+++++++++++|++++++.|+ +. ...++++++
T Consensus        78 ~vGdrV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~e~A~-l~-~~~~~~~~~  155 (171)
T d1rjwa1          78 KVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNTIIEVQP-LE-KINEVFDRM  155 (171)
T ss_dssp             CTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEEBTTTBCCSSBSEEEEEGGGCEECCTTCCEEEEE-GG-GHHHHHHHH
T ss_pred             eeeeEEeeccccccccccccccCCCccccccccccceeccCccccceEecHHHEEECCCCCCHHHHH-HH-HHHHHHHHH
Confidence            9999997532                           124899999999999999999999987665 43 456677777


Q ss_pred             HhhcCCCCCCEEEEeCC
Q psy2960         206 KDYNSLSPGDVVIQNGA  222 (405)
Q Consensus       206 ~~~~~~~~g~~VLI~ga  222 (405)
                      .. +.+ +|++|||.|-
T Consensus       156 ~~-~~~-~G~tVlViG~  170 (171)
T d1rjwa1         156 LK-GQI-NGRVVLTLED  170 (171)
T ss_dssp             HT-TCC-SSEEEEECCC
T ss_pred             Hh-cCC-CCCEEEEeCC
Confidence            54 566 5999999983

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.96  E-value=4.2e-30  Score=224.53  Aligned_cols=145  Identities=20%  Similarity=0.265  Sum_probs=131.1

Q ss_pred             cccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCC
Q psy2960          69 FSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSD  148 (405)
Q Consensus        69 ~~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~  148 (405)
                      .++||||++++++|+|   ++++++|.|+|+++||||||.++|||++|++.+.|.++.  .+|.++|||++|+|+++|++
T Consensus         5 ~~~~~KAaV~~~~g~p---l~i~evp~P~p~~geVlVkv~a~gic~sD~~~~~G~~~~--~~P~v~GHE~~G~V~~vG~~   79 (202)
T d1e3ia1           5 KVIKCKAAIAWKTGSP---LCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKA--LFPVVLGHECAGIVESVGPG   79 (202)
T ss_dssp             SCEEEEEEEBCSTTSC---CEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTTSCC--CSSBCCCCEEEEEEEEECTT
T ss_pred             CeEEEEEEEEccCCCC---CEEEEEECCCCCCCEEEEEEEEEEEeccccceeeeeccc--ccccccccccceEEeeecCC
Confidence            4789999999999987   999999999999999999999999999999999998764  67999999999999999999


Q ss_pred             CCCCCCCCEEEecCC---------------------------------------------------CCCcccceEeeccc
Q psy2960         149 VSSLAVGDHVIPDTQ---------------------------------------------------HLGTWRNYGKFNHD  177 (405)
Q Consensus       149 v~~~~~GdrV~~~~~---------------------------------------------------~~G~~a~~~~v~~~  177 (405)
                      |+++++||||++.+.                                                   ..|+|+||+++++.
T Consensus        80 V~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~G~faey~~v~~~  159 (202)
T d1e3ia1          80 VTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEA  159 (202)
T ss_dssp             CCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEEETTEEEBCCTTTCCSBSEEEEEGG
T ss_pred             ceeccCCCEEEEEeeccccccccccCCcccccccccccccCccceecccccccccccCceeeecccccCCceEEEEEehh
Confidence            999999999987521                                                   13899999999999


Q ss_pred             ceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeC
Q psy2960         178 VLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNG  221 (405)
Q Consensus       178 ~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~g  221 (405)
                      .++++|++++++.++++.+++.+++.++..   +++|++|.|..
T Consensus       160 ~l~~lP~~~~~~~~~~~~~~~~~~~~a~~~---~k~G~~V~vi~  200 (202)
T d1e3ia1         160 NLARVDDEFDLDLLVTHALPFESINDAIDL---MKEGKSIRTIL  200 (202)
T ss_dssp             GEEECCTTSCGGGGEEEEEEGGGHHHHHHH---HHTTCCSEEEE
T ss_pred             hEEECCCCCCHHHHHHHHHHHHHHHHHHHh---CCCCCEEEEEE
Confidence            999999999999999999999998888753   47899998863

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.96  E-value=5.8e-30  Score=217.36  Aligned_cols=141  Identities=23%  Similarity=0.379  Sum_probs=127.7

Q ss_pred             eEEEEccCCCCccceEeeeecCCCC-CCCeEEEEEEEeecChhhhhhhcccCCC--CCCCCCCCccceEEEEEEEcCCCC
Q psy2960          74 NKLVYNQHGTPLRVVTVENETLNSV-QKHEVVVKMLVAPVNPADINTIQGVYPI--KPTLPAVPGFEGVGEVVEVGSDVS  150 (405)
Q Consensus        74 ~a~~~~~~g~~~~~l~~~~~~~p~~-~~~eVlVkv~a~gi~~~D~~~~~g~~~~--~~~~p~~lG~E~~G~V~~vG~~v~  150 (405)
                      ||++++++|+|   ++++++|.|++ +++||||||.|+|||++|++.+.|.++.  .+.+|+++|||++|+|+++|++++
T Consensus         1 kA~~~~~~g~p---l~i~~v~~P~~~~~~eVlVkv~a~gic~sD~~~~~g~~~~~~~~~~P~v~GhE~~G~V~~vG~~v~   77 (171)
T d1h2ba1           1 KAARLHEYNKP---LRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVE   77 (171)
T ss_dssp             CEEEESSTTSC---CEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCC
T ss_pred             CEEEEEeCCCC---CEEEEeeCCCCCCCCEEEEEEEecccceeeehccCCCcccccCCccccccceeeeeeeecccCCCC
Confidence            78999999988   99999999986 6899999999999999999999986542  246799999999999999999999


Q ss_pred             CCCCCCEEEecC--------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHH
Q psy2960         151 SLAVGDHVIPDT--------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRM  204 (405)
Q Consensus       151 ~~~~GdrV~~~~--------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~a  204 (405)
                      ++++||||++.+                          ..+|+|+||+.+++++++++|++++++.|+++.+++.|||++
T Consensus        78 ~~~~GdrV~~~~~~~cg~~~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~iP~~~~~e~aa~~~~~~~ta~~a  157 (171)
T d1h2ba1          78 GLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDGGFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLER  157 (171)
T ss_dssp             SCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBCBTTTBCCSSBSEEEECGGGEEECCTTCCCCEEEEEGGGHHHHHHH
T ss_pred             cCCCCCEEEEcCccCCCCcccccccccccccccccceeecccccceeeeehhhcceecCCCCCHHHHHHHHhHHHHHHHH
Confidence            999999998753                          135899999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCEEEE
Q psy2960         205 LKDYNSLSPGDVVIQ  219 (405)
Q Consensus       205 l~~~~~~~~g~~VLI  219 (405)
                      +.. +++ .|++|||
T Consensus       158 l~~-~~~-~G~~VlI  170 (171)
T d1h2ba1         158 LEK-GEV-LGRAVLI  170 (171)
T ss_dssp             HHT-TCC-SSEEEEE
T ss_pred             HHh-cCC-CCCEEEe
Confidence            965 788 8999998

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=8.2e-30  Score=219.75  Aligned_cols=150  Identities=18%  Similarity=0.264  Sum_probs=129.8

Q ss_pred             CcccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcC
Q psy2960          68 GFSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGS  147 (405)
Q Consensus        68 ~~~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~  147 (405)
                      .+|.+||++++.++++. ..+++.+.+.++++++||||||.|+|||++|++.+.|.++. ..+|+++|||++|+|+++|+
T Consensus         2 ~~P~~~ka~~~~~~~~~-~~~~~~~~~p~p~~~~eVlVkv~a~giC~sDl~~~~g~~~~-~~~P~i~GHE~~G~Vv~vG~   79 (192)
T d1piwa1           2 SYPEKFEGIAIQSHEDW-KNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGN-MKMPLVVGHEIVGKVVKLGP   79 (192)
T ss_dssp             CTTTCEEEEEECCSSST-TSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSC-CCSSEECCCCEEEEEEEECT
T ss_pred             CCCceeEEEEEeCCCcC-CcceEeeccCCCCCCCeEEEEEeeeCCCcchHHHHcCCCCC-CCCCcCcccccccchhhccc
Confidence            46899999999998875 34677777777789999999999999999999999998764 47899999999999999999


Q ss_pred             CC-CCCCCCCEEEecC----------------------------------CCCCcccceEeecccceEEcCCCCChhhhc
Q psy2960         148 DV-SSLAVGDHVIPDT----------------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEIS  192 (405)
Q Consensus       148 ~v-~~~~~GdrV~~~~----------------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa  192 (405)
                      ++ +.+++||||+..+                                  ..+|+|+||+++++++++++|+++++++|+
T Consensus        80 ~v~~~~k~GdrV~~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~G~~~~Ggfaey~~v~~~~~~~iP~~l~~e~Aa  159 (192)
T d1piwa1          80 KSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQGGYANYVRVHEHFVVPIPENIWVETLP  159 (192)
T ss_dssp             TCCSSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCCCSSBSEEEEEGGGEEECCTTCCEEEEE
T ss_pred             ccccccCCCCeeeEeeeccCCCCchhhhcCCcccccccccccccccccccccccceeeEEEeehHHeEECCCCCCHHHHH
Confidence            98 6799999996331                                  125899999999999999999999998877


Q ss_pred             cCCCcHHHHHHHHHhhcCCCCCCEEEEe
Q psy2960         193 GITSNPCTAYRMLKDYNSLSPGDVVIQN  220 (405)
Q Consensus       193 ~~~~~~~ta~~al~~~~~~~~g~~VLI~  220 (405)
                      .+.+.+.|||+++.. +++++|++|||.
T Consensus       160 l~~~~~~ta~~~l~~-~~vk~g~~Vvv~  186 (192)
T d1piwa1         160 VGEAGVHEAFERMEK-GDVRYRFTLVGY  186 (192)
T ss_dssp             SSHHHHHHHHHHHHH-TCCSSEEEEECC
T ss_pred             HHHHHHHHHHHHHHH-hCCCCCCEEEEE
Confidence            665557799999964 899999999986

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.9e-30  Score=218.14  Aligned_cols=170  Identities=21%  Similarity=0.273  Sum_probs=142.9

Q ss_pred             CChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE
Q psy2960         186 IALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY  265 (405)
Q Consensus       186 ~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~  265 (405)
                      +|++|||++|++++|||+++.+.+++++|++|||+|++|++|++++|+|+++|++++++++++    ++++.++++|+++
T Consensus         1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~----~~~~~~~~~Ga~~   76 (174)
T d1yb5a2           1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTE----EGQKIVLQNGAHE   76 (174)
T ss_dssp             SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH----HHHHHHHHTTCSE
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCcccccccccc----cccccccccCccc
Confidence            689999999999999999999889999999999999999999999999999999999998653    4578899999999


Q ss_pred             EeChhh--HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchh
Q psy2960         266 VFTEEE--LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRW  342 (405)
Q Consensus       266 v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~  342 (405)
                      ++|+++  +.+ +++.|++.++|+||||+|++.+..++++++++|+++.+|...  +.+++...++.|++++.|+++++.
T Consensus        77 vi~~~~~~~~~~i~~~t~~~g~d~v~d~~g~~~~~~~~~~l~~~G~iv~~G~~~--~~~~~~~~~~~k~~~i~g~~~~~~  154 (174)
T d1yb5a2          77 VFNHREVNYIDKIKKYVGEKGIDIIIEMLANVNLSKDLSLLSHGGRVIVVGSRG--TIEINPRDTMAKESSIIGVTLFSS  154 (174)
T ss_dssp             EEETTSTTHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHEEEEEEEEECCCCS--CEEECTHHHHTTTCEEEECCGGGC
T ss_pred             ccccccccHHHHhhhhhccCCceEEeecccHHHHHHHHhccCCCCEEEEEecCC--CCCCCHHHHHHCCCEEEEEEecCC
Confidence            998764  666 999999999999999999988889999999999999998533  455677778889999999987653


Q ss_pred             hhhhccHHHHHHHHHHHHHHHHcC
Q psy2960         343 QKENKESAERKSMMNELTEMMRTG  366 (405)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~g  366 (405)
                      .     +++..+..+.+.+.++.|
T Consensus       155 ~-----~~~~~~~~~~l~~g~~~G  173 (174)
T d1yb5a2         155 T-----KEEFQQYAAALQAGMEIG  173 (174)
T ss_dssp             C-----HHHHHHHHHHHHHHHHHT
T ss_pred             C-----HHHHHHHHHHHHHHHHcc
Confidence            2     133344444444444443

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.96  E-value=1.9e-29  Score=218.17  Aligned_cols=145  Identities=25%  Similarity=0.336  Sum_probs=128.2

Q ss_pred             ccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCC
Q psy2960          70 SYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDV  149 (405)
Q Consensus        70 ~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v  149 (405)
                      +++|+|+++.+.+++   |+++++|.|+|++|||||||.++|||++|++++.|.++.  .+|+++|||++|+|+++|++|
T Consensus         1 ~k~~~Aav~~~~g~~---l~l~~v~~P~p~~geVlVkv~a~gic~sD~~~~~G~~~~--~~P~i~GHE~~G~V~~vG~~v   75 (194)
T d1f8fa1           1 LKDIIAAVTPCKGAD---FELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPV--PLPAVLGHEGSGIIEAIGPNV   75 (194)
T ss_dssp             CEEEEEEEBCSTTCC---CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCC--CSSBCCCCEEEEEEEEECTTC
T ss_pred             CceeEEEEEcCCCCC---cEEEEeeCCCCCCCEEEEEEEEEEecCchHhhhhhcccc--cCCcccccceEEEeeecCccc
Confidence            468999999999987   999999999999999999999999999999999998764  689999999999999999999


Q ss_pred             CCCCCCCEEEecCC------------------------------------------------CCCcccceEeecccceEE
Q psy2960         150 SSLAVGDHVIPDTQ------------------------------------------------HLGTWRNYGKFNHDVLMK  181 (405)
Q Consensus       150 ~~~~~GdrV~~~~~------------------------------------------------~~G~~a~~~~v~~~~~~~  181 (405)
                      ++|++||||+..+.                                                ..|+|+||.+++..++++
T Consensus        76 ~~~~vGDrVv~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~dg~~~~~~~~~~~~~~~~~~~g~fae~~~v~~~~~~~  155 (194)
T d1f8fa1          76 TELQVGDHVVLSYGYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVK  155 (194)
T ss_dssp             CSCCTTCEEEECCCCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEE
T ss_pred             eeEccCceeeeecccccCChhhhCCCcccccccccceeccccccceeeeecCCceeeccccccccccceeEEEehHHEEE
Confidence            99999999975310                                                126899999999999999


Q ss_pred             cCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEe
Q psy2960         182 VPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIV  245 (405)
Q Consensus       182 iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~  245 (405)
                      +|+++++++++                         ++.|+ |++|++|+|+|+.+|++.++++
T Consensus       156 ip~~i~~~~~~-------------------------~i~g~-g~~g~~aiq~a~~~g~~~iiaV  193 (194)
T d1f8fa1         156 VTKDFPFDQLV-------------------------KFYAF-DEINQAAIDSRKGITLKPIIKI  193 (194)
T ss_dssp             ECTTCCGGGGE-------------------------EEEEG-GGHHHHHHHHHHTSCSEEEEEC
T ss_pred             CCCCCCcccEE-------------------------EEeCc-HHHHHHHHHHHHHcCCCEEEEe
Confidence            99998876543                         34455 9999999999999999887765

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=1.7e-29  Score=214.71  Aligned_cols=167  Identities=24%  Similarity=0.343  Sum_probs=133.6

Q ss_pred             CChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE
Q psy2960         186 IALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY  265 (405)
Q Consensus       186 ~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~  265 (405)
                      +|++|||+++++++|||+++.+ ++++|||+|||+|++|++|++++|+|+++|++|+++++++++    ++.++++|+++
T Consensus         1 ls~eeAA~l~~~~~TA~~al~~-~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~----~~~~~~lGa~~   75 (171)
T d1iz0a2           1 LSPEEAAAFPVSFLTAYLALKR-AQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEK----LALPLALGAEE   75 (171)
T ss_dssp             CCHHHHHTSHHHHHHHHHHHHH-TTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGG----SHHHHHTTCSE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEeccccchhhhhhhhcccccccccccccccc----cccccccccce
Confidence            6899999999999999999976 899999999999999999999999999999999999877544    67889999999


Q ss_pred             EeChhhHHHHhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhhhh
Q psy2960         266 VFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQKE  345 (405)
Q Consensus       266 v~~~~d~~~i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~~~  345 (405)
                      ++|+.+..  .+.+.+.|+|+||||+| +.+..++++++++|+++.+|...+...+++...++.|++++.|+++..+.+.
T Consensus        76 ~i~~~~~~--~~~~~~~g~D~v~d~~G-~~~~~~~~~l~~~G~~v~~G~~~g~~~~~~~~~~~~k~~~i~g~~~~~~~~~  152 (171)
T d1iz0a2          76 AATYAEVP--ERAKAWGGLDLVLEVRG-KEVEESLGLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFWLTPLLRE  152 (171)
T ss_dssp             EEEGGGHH--HHHHHTTSEEEEEECSC-TTHHHHHTTEEEEEEEEEC-------CCCCTTHHHHTTCEEEECCHHHHTTC
T ss_pred             eeehhhhh--hhhhccccccccccccc-hhHHHHHHHHhcCCcEEEEeCCCCCCCCccHHHHHHCCcEEEEEeCcChhhh
Confidence            99987653  34455789999999988 5678899999999999999976666667888888999999999988766442


Q ss_pred             hccHHHHHHHHHHHHHHH
Q psy2960         346 NKESAERKSMMNELTEMM  363 (405)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~  363 (405)
                         ++...+.+..+.+++
T Consensus       153 ---~~~~~~~~~~l~p~i  167 (171)
T d1iz0a2         153 ---GALVEEALGFLLPRL  167 (171)
T ss_dssp             ---HHHHHHHHHHHGGGB
T ss_pred             ---HHHHHHHHHHHHHHH
Confidence               233344444444333

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=5.7e-29  Score=213.44  Aligned_cols=175  Identities=19%  Similarity=0.237  Sum_probs=145.0

Q ss_pred             CChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE
Q psy2960         186 IALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY  265 (405)
Q Consensus       186 ~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~  265 (405)
                      +||+|||+++++++|||++|++.++++|||+|||+||+|++|++++|+|+.+|++|++++++++    +++.++++|+++
T Consensus         1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~----k~~~~~~lGa~~   76 (179)
T d1qora2           1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQ----KAQSALKAGAWQ   76 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHH----HHHHHHHHTCSE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchH----HHHHHHhcCCeE
Confidence            5899999999999999999999889999999999999999999999999999999999987644    478889999999


Q ss_pred             EeChhh--HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEeccCCCCcccCccccccc-CeEEEEEecch
Q psy2960         266 VFTEEE--LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFK-DITLRGHWMTR  341 (405)
Q Consensus       266 v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k-~~~~~g~~~~~  341 (405)
                      ++|+++  +.+ ++++|++.++|+|+|++|++.+..++++++++|+++.+|.........+...+..+ .+.+.+..+..
T Consensus        77 vi~~~~~d~~~~v~~~t~g~g~d~v~d~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  156 (179)
T d1qora2          77 VINYREEDLVERLKEITGGKKVRVVYDSVGRDTWERSLDCLQRRGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQG  156 (179)
T ss_dssp             EEETTTSCHHHHHHHHTTTCCEEEEEECSCGGGHHHHHHTEEEEEEEEECCCTTCCCCCBCTHHHHHTTSCEEECCCHHH
T ss_pred             EEECCCCCHHHHHHHHhCCCCeEEEEeCccHHHHHHHHHHHhcCCeeeecccccCCccccchhhhhccceEEEEeeEEee
Confidence            998754  666 99999999999999999999999999999999999999977666555555444333 34444333333


Q ss_pred             hhhhhccHHHHHHHHHHHHHHHHcCc
Q psy2960         342 WQKENKESAERKSMMNELTEMMRTGK  367 (405)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~g~  367 (405)
                      +.   ..+++..+.++++++++++|.
T Consensus       157 ~~---~~~~~~~~~~~~l~~lv~~Gv  179 (179)
T d1qora2         157 YI---TTREELTEASNELFSLIASGV  179 (179)
T ss_dssp             HC---CSHHHHHHHHHHHHHHHHTTS
T ss_pred             ec---CCHHHHHHHHHHHHHHHHCcC
Confidence            22   223666778899999999884

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.1e-29  Score=214.37  Aligned_cols=144  Identities=21%  Similarity=0.210  Sum_probs=123.1

Q ss_pred             cceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCC--CCCCCCCCCccceEEEEEEEcCC
Q psy2960          71 YLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYP--IKPTLPAVPGFEGVGEVVEVGSD  148 (405)
Q Consensus        71 ~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~--~~~~~p~~lG~E~~G~V~~vG~~  148 (405)
                      ..|.+++++++++    ++++++|.|+|+++||||||.++|||++|++.+.+...  ....+|.++|||++|+|+++|++
T Consensus         6 p~~~a~V~~gp~~----l~l~evp~P~p~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~   81 (185)
T d1pl8a1           6 PNNLSLVVHGPGD----LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSS   81 (185)
T ss_dssp             CCCEEEEEEETTE----EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTT
T ss_pred             CCCEEEEEeCCCe----EEEEEeECCCCCCCEEEEEEEEEEeeCchhhhhccccccccCCCCCeeeeeeeeeeEEEeccc
Confidence            4688999999876    99999999999999999999999999999999876421  12467899999999999999999


Q ss_pred             CCCCCCCCEEEecC---------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHH
Q psy2960         149 VSSLAVGDHVIPDT---------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTA  201 (405)
Q Consensus       149 v~~~~~GdrV~~~~---------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta  201 (405)
                      +++|++||||+..+                           ..+|+|+||++++.++++++|+++++++|+++++  .+|
T Consensus        82 v~~~~~GdrV~~~~~~~cg~c~~c~~G~~~~c~~~~~~g~~~~~G~~aey~~~~~~~~~~lP~~~~~~~aa~~pl--~~a  159 (185)
T d1pl8a1          82 VKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATPPDDGNLCRFYKHNAAFCYKLPDNVKPLVTHRFPL--EKA  159 (185)
T ss_dssp             CCSCCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEETTBTTBCCSCBSEEEEEGGGEEECCTTCGGGEEEEEEG--GGH
T ss_pred             eeeecccccceecceeccccchhhccchhchhccceeeecccccccceEEEEEchHHEEECCCCCCHHHHHHHHH--HHH
Confidence            99999999998642                           2358899999999999999999999999987753  456


Q ss_pred             HHHHHhhcCCCCCCEEEEeCC
Q psy2960         202 YRMLKDYNSLSPGDVVIQNGA  222 (405)
Q Consensus       202 ~~al~~~~~~~~g~~VLI~ga  222 (405)
                      ++++.. .++++|++||| |+
T Consensus       160 ~~a~~~-~~~~~G~~VlI-g~  178 (185)
T d1pl8a1         160 LEAFET-FKKGLGLKIML-KC  178 (185)
T ss_dssp             HHHHHH-HHTTCCSEEEE-EC
T ss_pred             HHHHHH-hCCCCCCEEEE-Ee
Confidence            666644 67889999999 44

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=1.4e-28  Score=210.21  Aligned_cols=142  Identities=22%  Similarity=0.299  Sum_probs=123.2

Q ss_pred             cccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCC
Q psy2960          69 FSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSD  148 (405)
Q Consensus        69 ~~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~  148 (405)
                      |+++|||+++++++++   ++++++|.|+|+++||||||.++|||++|++++.|.++. .++|+++|||++|+|+++|++
T Consensus         1 m~~k~kA~v~~~~~~p---l~i~ev~~P~~~~~evlVkv~a~gIC~sD~~~~~G~~~~-~~~P~vlGHE~~G~V~~vG~~   76 (184)
T d1vj0a1           1 MGLKAHAMVLEKFNQP---LVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPR-VPLPIILGHEGAGRVVEVNGE   76 (184)
T ss_dssp             CCEEEEEEEBCSTTSC---CEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTT-CCSSBCCCCEEEEEEEEESSC
T ss_pred             CCceEEEEEEecCCCC---cEEEEeeCCCCCCCEEEEEEEEECCCCCchhheeccCCc-cccccccceeeeeeeeEEecc
Confidence            5788999999999987   999999999999999999999999999999999998764 368999999999999999999


Q ss_pred             CC-----CCCCCCEEEecC-----------------------------------CCCCcccceEeec-ccceEEcCCCCC
Q psy2960         149 VS-----SLAVGDHVIPDT-----------------------------------QHLGTWRNYGKFN-HDVLMKVPKDIA  187 (405)
Q Consensus       149 v~-----~~~~GdrV~~~~-----------------------------------~~~G~~a~~~~v~-~~~~~~iP~~~s  187 (405)
                      |+     .+++||||+..+                                   ..+|+|+||++++ +.+++++|++++
T Consensus        77 v~~~~~~~~~~Gd~V~~~~~~~Cg~C~~C~~g~~~~~c~~~~~~G~~~~~~~~~~~~Gg~ae~~~v~~~~~v~~ip~~l~  156 (184)
T d1vj0a1          77 KRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYGINRGCSEYPHLRGCYSSHIVLDPETDVLKVSEKIT  156 (184)
T ss_dssp             CBCTTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEETTTTCCSSSTTCCCSSSBSEEEECTTCCEEEECTTCC
T ss_pred             ccccccccccceeeeEeccccccccChhHhCccccccCCCceeeccCCCCCCCCCcceeCcCcEEechhHcEEECCCCCC
Confidence            86     468999998532                                   1268999999996 578999999999


Q ss_pred             hhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeC
Q psy2960         188 LTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNG  221 (405)
Q Consensus       188 ~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~g  221 (405)
                      ++++      +.+|++++.. +++++|++|||+-
T Consensus       157 ~~~p------l~~A~~a~~~-~~~~~G~~VlI~~  183 (184)
T d1vj0a1         157 HRLP------LKEANKALEL-MESREALKVILYP  183 (184)
T ss_dssp             EEEE------GGGHHHHHHH-HHHTSCSCEEEEC
T ss_pred             HHHH------HHHHHHHHHH-hCCCcCCEEEEee
Confidence            7642      3457888755 7999999999973

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.95  E-value=4e-28  Score=208.53  Aligned_cols=166  Identities=25%  Similarity=0.338  Sum_probs=141.5

Q ss_pred             ccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh
Q psy2960         192 SGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE  271 (405)
Q Consensus       192 a~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d  271 (405)
                      ++++++++|||++|.+.+++++||+|||+|++|++|++++|+|+..|++||++++++    ++.+.++++|+++++++++
T Consensus         8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~----~~~~~~~~~Ga~~vi~~~~   83 (182)
T d1v3va2           8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSD----EKIAYLKQIGFDAAFNYKT   83 (182)
T ss_dssp             TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH----HHHHHHHHTTCSEEEETTS
T ss_pred             HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCH----HHHHHHHhhhhhhhccccc
Confidence            578889999999999999999999999999999999999999999999999999764    3478999999999998754


Q ss_pred             --HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEeccCCC------CcccCcccccccCeEEEEEecchh
Q psy2960         272 --LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSRE------PVQIPTSAFIFKDITLRGHWMTRW  342 (405)
Q Consensus       272 --~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~------~~~~~~~~~~~k~~~~~g~~~~~~  342 (405)
                        +.+ +.+.+++.|+|+||||+|++....++++++++|+++.+|..+..      +..++...++.|++++.|+++.++
T Consensus        84 ~~~~~~~~~~~~~~Gvd~v~D~vG~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~l~~k~~ti~g~~~~~~  163 (182)
T d1v3va2          84 VNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRW  163 (182)
T ss_dssp             CSCHHHHHHHHCTTCEEEEEESSCHHHHHHHGGGEEEEEEEEECCCGGGTTCTTSCCBCCCHHHHHHTTCEEEECCGGGC
T ss_pred             ccHHHHHHHHhhcCCCceeEEecCchhhhhhhhhccCCCeEEeecceeeccccccCCCCcchHHHhhcCcEEEEEEEecc
Confidence              444 78888899999999999999999999999999999999964321      223444567889999999987765


Q ss_pred             hhhhccHHHHHHHHHHHHHHHHcC
Q psy2960         343 QKENKESAERKSMMNELTEMMRTG  366 (405)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~g  366 (405)
                      ..     +...+.++++.+++++|
T Consensus       164 ~~-----~~~~~~~~~l~~~i~~G  182 (182)
T d1v3va2         164 QG-----DVREKALRDLMKWVLEG  182 (182)
T ss_dssp             CH-----HHHHHHHHHHHHHHHTT
T ss_pred             Ch-----HHHHHHHHHHHHHHhCc
Confidence            32     45567889999999886

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.95  E-value=4e-28  Score=207.49  Aligned_cols=141  Identities=21%  Similarity=0.286  Sum_probs=118.5

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCC-------CCCCCCCCccceEEEEEEE
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPI-------KPTLPAVPGFEGVGEVVEV  145 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-------~~~~p~~lG~E~~G~V~~v  145 (405)
                      |||++++++|+|   ++++++|.|+|++|||||||.++|||++|+++++|.++.       ...+|+++|||++|+|+++
T Consensus         1 MKA~~~~~~G~p---l~i~dv~~P~p~~~eVlVkv~a~gic~~D~~~~~G~~~~~~~~~~~~~~~P~v~GhE~~G~V~~~   77 (177)
T d1jvba1           1 MRAVRLVEIGKP---LSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEV   77 (177)
T ss_dssp             CEEEEECSTTSC---CEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEE
T ss_pred             CeEEEEEeCCCC---CEEEEeeCCCCCCCEEEEEEEEEecccceeeeecCcccccccccccccCCCccccceEEEEEeee
Confidence            899999999987   899999999999999999999999999999999987542       2468999999999999999


Q ss_pred             cCCCCCCCCCCEEEecC--------------------------CCCCcccceEeecccc-eEEcCCCCChhhhccC-CCc
Q psy2960         146 GSDVSSLAVGDHVIPDT--------------------------QHLGTWRNYGKFNHDV-LMKVPKDIALTEISGI-TSN  197 (405)
Q Consensus       146 G~~v~~~~~GdrV~~~~--------------------------~~~G~~a~~~~v~~~~-~~~iP~~~s~~~Aa~~-~~~  197 (405)
                      |+++++|++||||++.+                          ..+|+|+||++++... ++++|+ +++.++|++ ..+
T Consensus        78 g~~v~~~~~GdrV~~~~~~~c~~c~~~~~g~~~~c~~~~~~g~~~~G~~aey~~vp~~~~~~~~~~-~~~~~~a~~~~~~  156 (177)
T d1jvba1          78 GDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWLGINFDGAYAEYVIVPHYKYMYKLRR-VKPMITKTMKLEE  156 (177)
T ss_dssp             CTTCCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEEBTTTBCCSSBSEEEESCGGGEEECSS-SCCCCEEEEEGGG
T ss_pred             ccCccccccCceEeeeeccccccccccccccccccCCcceeeeccccccccEEEEEhHHeEEECCC-CChHHHHHHHHHH
Confidence            99999999999998653                          1248999999997665 555554 555565555 457


Q ss_pred             HHHHHHHHHhhcCCCCCCEEEE
Q psy2960         198 PCTAYRMLKDYNSLSPGDVVIQ  219 (405)
Q Consensus       198 ~~ta~~al~~~~~~~~g~~VLI  219 (405)
                      +.++++++.. .++ .|++|||
T Consensus       157 ~~~a~~~~~~-~~~-~G~~VlI  176 (177)
T d1jvba1         157 ANEAIDNLEN-FKA-IGRQVLI  176 (177)
T ss_dssp             HHHHHHHHHT-TCC-CSEEEEE
T ss_pred             HHHHHHHHHh-hcc-cCCceEC
Confidence            8889999865 566 5999998

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.95  E-value=1.8e-30  Score=222.16  Aligned_cols=161  Identities=39%  Similarity=0.569  Sum_probs=138.5

Q ss_pred             ccceeEEEEccCCCCccceEe--eeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCC---------CCCCCCCccce
Q psy2960          70 SYLANKLVYNQHGTPLRVVTV--ENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIK---------PTLPAVPGFEG  138 (405)
Q Consensus        70 ~~~~~a~~~~~~g~~~~~l~~--~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~---------~~~p~~lG~E~  138 (405)
                      |.||||++++++|+|.+.+++  .+.|.|+|+++||||||+++|||++|+++++|.++..         ...|.++|+|+
T Consensus         1 m~t~kA~v~~~~G~p~~~l~l~~~~~p~p~~~~~eVlVkv~a~~i~~~D~~~~~G~~~~~~~~~~~~~~~~~~~v~G~e~   80 (175)
T d1gu7a1           1 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEG   80 (175)
T ss_dssp             CEEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCC
T ss_pred             CceeEEEEEccCCCcccccEEEEEECCCCCCCcCEEEEEEEEeccCcceeEEEecCcccccccccccCCCCCCccccccc
Confidence            578999999999998765555  5677788899999999999999999999999875432         25678899999


Q ss_pred             EEEEEEEcCCCCCCCCCCEEEecCCCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHh-hcCCCCCCEE
Q psy2960         139 VGEVVEVGSDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKD-YNSLSPGDVV  217 (405)
Q Consensus       139 ~G~V~~vG~~v~~~~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~-~~~~~~g~~V  217 (405)
                      +|+|++.|.+++.++.||||.......|+|+||+.+++++++++|++++.+  +++++.++|||+++.. .+++++|++|
T Consensus        81 ~g~V~~~~~~~~~~~~g~~v~~~~~~~g~~aey~~v~~~~~~~iP~~~~~~--~a~~~~~~ta~~~l~~~~~~~~~g~~v  158 (175)
T d1gu7a1          81 LFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDDFIKLPNPAQSK--ANGKPNGLTDAKSIETLYDGTKPLHEL  158 (175)
T ss_dssp             EEEEEEECTTCCSCCTTCEEEESSSCCCCSBSEEEEEGGGEEEECCHHHHH--HTTCSCCCCCCCCEEEECCSSSCHHHH
T ss_pred             ccccccccccccccccccceeccccccccccceeeehhhhccCCCccchhh--hhccchHHHHHHHHHHHhcCCCCCCEE
Confidence            999999999999999999999887778999999999999999999987544  4445688899998764 4689999999


Q ss_pred             EEeC-CCcHHHHHHHH
Q psy2960         218 IQNG-ANSACGQNVIQ  232 (405)
Q Consensus       218 LI~g-a~G~vG~~aiq  232 (405)
                      ||+| |+|++|+++||
T Consensus       159 li~gaa~~gvG~~~iQ  174 (175)
T d1gu7a1         159 YQDGVANSKDGKQLIT  174 (175)
T ss_dssp             HHHHHHTGGGSCEEEE
T ss_pred             EEECccchhhhheEEe
Confidence            9998 55889998876

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.95  E-value=4.9e-30  Score=215.95  Aligned_cols=152  Identities=20%  Similarity=0.220  Sum_probs=135.3

Q ss_pred             cceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCC
Q psy2960          71 YLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVS  150 (405)
Q Consensus        71 ~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~  150 (405)
                      ++|||++++++|++ ..+++++++.|+|++|||||||+|+|||++|++.+.|.++..+..|.++|+|++|+|++  +.++
T Consensus         2 ~~~ka~~~~~~g~~-~~l~~~~v~~p~l~~~eVLVkV~a~gin~~D~~~~~g~~~~~~~~~~~~g~e~~G~v~~--~~~~   78 (162)
T d1tt7a1           2 TLFQALQAEKNADD-VSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVS--SNDP   78 (162)
T ss_dssp             CEEEEEEECCGGGS-CCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEE--CSST
T ss_pred             CcEEEEEEEecCCC-eEEEEEEcCCCCCCCCEEEEEEEEecccchhhheeeecccccccceeeeeeeccccccc--cccc
Confidence            57999999999876 56999999999999999999999999999999999998887667889999999999998  6678


Q ss_pred             CCCCCCEEEecC-----CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcH
Q psy2960         151 SLAVGDHVIPDT-----QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSA  225 (405)
Q Consensus       151 ~~~~GdrV~~~~-----~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~  225 (405)
                      ++++||+|+...     ..+|+|+||+.+++++++++|+++|+++||++++.++|||.++.. .....+++|||+|++|+
T Consensus        79 ~~~~g~~v~~~~~~~g~~~~G~~aey~~v~~~~l~~iP~~ls~~~Aa~~~~~~~ta~~~~~~-~~~~~~~~Vli~ga~G~  157 (162)
T d1tt7a1          79 RFAEGDEVIATSYELGVSRDGGLSEYASVPGDWLVPLPQNLSLKEAMVDQLLTIVDREVSLE-ETPGALKDILQNRIQGR  157 (162)
T ss_dssp             TCCTTCEEEEESTTBTTTBCCSSBSSEEECGGGEEECCTTCCHHHHHHSCSTTSEEEEECST-THHHHHHHTTTTCCSSE
T ss_pred             ccccceeeEeeeccceeccccccceEEEecHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEECCcce
Confidence            999999998763     236999999999999999999999999999999999999987654 34556688999999876


Q ss_pred             H
Q psy2960         226 C  226 (405)
Q Consensus       226 v  226 (405)
                      +
T Consensus       158 v  158 (162)
T d1tt7a1         158 V  158 (162)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.2e-27  Score=197.05  Aligned_cols=130  Identities=20%  Similarity=0.263  Sum_probs=115.6

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      |||+++++++++ ..+++++++.|+|++|||||||.|+|||++|++.+.|.++....+|.++|+|++|+|+++|.  +.+
T Consensus         1 MkA~v~~~~~~~-~~l~i~~v~~p~~~~geVlVkV~a~gin~~D~~~~~G~~~~~~~~p~v~G~e~~G~V~~~~~--~~~   77 (146)
T d1o89a1           1 LQALLLEQQDGK-TLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMIPGIDFAGTVRTSED--PRF   77 (146)
T ss_dssp             CEEEEEECC----CEEEEEECCGGGSCSCSEEEEEEEEECCHHHHHHHHTCSSCCCSSSBCCCSEEEEEEEEECS--TTC
T ss_pred             CeEEEEEcCCCc-eEEEEEEcCCCCCCCCEEEEEEeeccCccceeeEEEeecccccccceeccccccccceeecc--CCc
Confidence            899999999886 55889999999999999999999999999999999998887778899999999999999776  479


Q ss_pred             CCCCEEEecC-----CCCCcccceEeecccceEEcCCCCChhhhccCCCcHHHHHHHH
Q psy2960         153 AVGDHVIPDT-----QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSNPCTAYRML  205 (405)
Q Consensus       153 ~~GdrV~~~~-----~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~~~ta~~al  205 (405)
                      ++||+|+...     ..+|+|+||+.+++++++++|+++|+++||+++++++||+..+
T Consensus        78 ~~g~~v~~~~~~~g~~~~G~~Aey~~v~~~~vv~lP~~ls~~eAA~l~~a~~tA~~~~  135 (146)
T d1o89a1          78 HAGQEVLLTGWGVGENHWGGLAEQARVKGDWLVAMPQGQAAKEISLSEAPNFAEAIIN  135 (146)
T ss_dssp             CTTCEEEEECTTBTTTBCCSSBSEEEECGGGCEECCTTSCCEEECGGGHHHHHHHHHT
T ss_pred             cceeeEEeecccceecCCCcceeeeeeeeeeEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence            9999998653     2369999999999999999999999999999999998886655

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.95  E-value=1.5e-27  Score=207.37  Aligned_cols=145  Identities=21%  Similarity=0.282  Sum_probs=124.9

Q ss_pred             cccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCC
Q psy2960          69 FSYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSD  148 (405)
Q Consensus        69 ~~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~  148 (405)
                      -+++|||+++.++++|   ++++++|.|+|+++||||||.++|||++|++.+.|.++.  .+|.++|||++|+|+++|++
T Consensus         5 ~~~k~KAavl~~~~~~---l~i~ev~~P~p~~~eVlVkV~a~giC~sDl~~~~G~~~~--~~P~i~GHE~~G~Vv~vG~~   79 (198)
T d2jhfa1           5 KVIKCKAAVLWEEKKP---FSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT--PLPVIAGHEAAGIVESIGEG   79 (198)
T ss_dssp             SCEEEEEEEBCSTTSC---CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCC--CSSBCCCCSEEEEEEEECTT
T ss_pred             CceEEEEEEEecCCCC---CEEEEEECCCCCCCEEEEEEEEEecccccceeecCCccc--ccceecccceeEEEEecCcc
Confidence            4678999999999887   999999999999999999999999999999999998775  68999999999999999999


Q ss_pred             CCCCCCCCEEEecCC-----------------------------------------------CCCcccceEeecccceEE
Q psy2960         149 VSSLAVGDHVIPDTQ-----------------------------------------------HLGTWRNYGKFNHDVLMK  181 (405)
Q Consensus       149 v~~~~~GdrV~~~~~-----------------------------------------------~~G~~a~~~~v~~~~~~~  181 (405)
                      ++++++||||+..+.                                               ..|+|+||+++++.++++
T Consensus        80 v~~~~vGdrV~v~~~~~c~~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~G~fAEy~~v~~~~~~~  159 (198)
T d2jhfa1          80 VTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIHHFLGTSTFSQYTVVDEISVAK  159 (198)
T ss_dssp             CCSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEEGGGEEE
T ss_pred             ccCcCCCCEEEEeeeecccccccccCCccceeccccccccCccccCccccccccCceeccCCCCCcccCeEEeCHHHeEE
Confidence            999999999986420                                               128999999999999999


Q ss_pred             cCCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeC
Q psy2960         182 VPKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNG  221 (405)
Q Consensus       182 iP~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~g  221 (405)
                      +|+.++++.+++...++.+...+.   ..+++|++|+|..
T Consensus       160 ~p~~~~~e~l~~~~~~~~~v~~g~---~~l~~G~~VaVi~  196 (198)
T d2jhfa1         160 IDAAFALDPLITHVLPFEKINEGF---DLLRSGESIRTIL  196 (198)
T ss_dssp             CCTTSCCGGGEEEEEEGGGHHHHH---HHHHTTCCSEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHhhhhCC---ceeeCCCEEEEEE
Confidence            999999988777665555444332   2367899998863

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.94  E-value=2.9e-30  Score=224.29  Aligned_cols=155  Identities=24%  Similarity=0.267  Sum_probs=130.3

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCC-------CCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEE
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSV-------QKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEV  145 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~-------~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~v  145 (405)
                      +||++++++++    ++++++|.|++       +++||||||.++|||++|++++.|.++.  .+|+++|||++|+|+++
T Consensus         2 ~kA~v~~~~~~----le~~e~~~P~~~~p~~~p~~~eVlVkv~a~giC~sDl~~~~G~~~~--~~P~v~GHE~~G~Vv~v   75 (201)
T d1kola1           2 NRGVVYLGSGK----VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTTA--QVGLVLGHEITGEVIEK   75 (201)
T ss_dssp             EEEEEEEETTE----EEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSCC--CTTCBCCCCEEEEEEEE
T ss_pred             cEEEEEeCCCc----eEEEEecCCcccCCCCCCCCCEEEEEEEEEEEcchhhhhhcCCccc--ccceeccceeeeeeecc
Confidence            69999999986    99999999864       5699999999999999999999998765  68999999999999999


Q ss_pred             cCCCCCCCCCCEEEecC------------------------------------CCCCcccceEeecc--cceEEcCCCCC
Q psy2960         146 GSDVSSLAVGDHVIPDT------------------------------------QHLGTWRNYGKFNH--DVLMKVPKDIA  187 (405)
Q Consensus       146 G~~v~~~~~GdrV~~~~------------------------------------~~~G~~a~~~~v~~--~~~~~iP~~~s  187 (405)
                      |++|++|++||||+..+                                    ..+|+|+||++++.  .++++|||+.+
T Consensus        76 G~~V~~~~vGdrV~v~~~~~Cg~C~~C~~g~~~~~~~~~~~~~~~~~g~~~~~~~~Gg~aeyv~vp~~~~~l~~iPd~~~  155 (201)
T d1kola1          76 GRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMGDWTGGQAEYVLVPYADFNLLKLPDRDK  155 (201)
T ss_dssp             CTTCCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSCCBCCCSBSEEEESSHHHHCEECSCHHH
T ss_pred             ccccccccccceeEEeeeeeccCChhhhCCCcccccccccccccccccccCCCccccccccEEEeehHHCeEEECCCCCC
Confidence            99999999999997432                                    12489999999975  37999999877


Q ss_pred             hhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC
Q psy2960         188 LTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL  239 (405)
Q Consensus       188 ~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~  239 (405)
                      ..+++++..++.++++++.. ++.+.|+    .|+ |++|+.++|+||++||
T Consensus       156 ~~~~~~~~~~~~~~~~a~~~-~~~~~g~----~g~-G~vG~~~i~~ak~~GA  201 (201)
T d1kola1         156 AMEKINIAEVVGVQVISLDD-APRGYGE----FDA-GVPKKFVIDPHKTFSA  201 (201)
T ss_dssp             HHHTCCHHHHHTEEEECGGG-HHHHHHH----HHH-TCSCEEEECTTCSSCC
T ss_pred             hHHHHHHHHHHHHHHHHHHh-CCCCCeE----Eee-CHHHHHHHHHHHHcCC
Confidence            77777776667677777644 4444553    466 9999999999999986

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.94  E-value=1.9e-29  Score=214.60  Aligned_cols=142  Identities=20%  Similarity=0.204  Sum_probs=116.3

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      ||+++++++++    +++++.|.|+|+++||||||.++|||++|++.+.+..+. ..+|+++|||++|+|+++|++|++|
T Consensus         1 MKa~v~~~~~~----l~i~e~p~P~~~~~eVlIkv~a~gic~sD~~~~~~~~~~-~~~P~i~GhE~~G~V~~vG~~v~~~   75 (177)
T d1jqba1           1 MKGFAMLGINK----LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALG-DRKNMILGHEAVGEVVEVGSEVKDF   75 (177)
T ss_dssp             CEEEEEEETTE----EEEEECCCCCCCTTCEEEEEEEECCCHHHHHHHHHCTTC-CCSSEECCCCEEEEEEEECTTCCSC
T ss_pred             CeEEEEEeCCC----eEEEEeeCCCCCCCEEEEEEEEEecCCCcccccccCCCC-CCCCccCcceeeEEeeeccccccee
Confidence            89999999987    999999999999999999999999999999877654433 3679999999999999999999999


Q ss_pred             CCCCEEEecC-----------------------------CCCCcccceEeecc--cceEEcCCCCChhhhccCCCcHHHH
Q psy2960         153 AVGDHVIPDT-----------------------------QHLGTWRNYGKFNH--DVLMKVPKDIALTEISGITSNPCTA  201 (405)
Q Consensus       153 ~~GdrV~~~~-----------------------------~~~G~~a~~~~v~~--~~~~~iP~~~s~~~Aa~~~~~~~ta  201 (405)
                      ++||||+..+                             ..+|+|+||+.++.  .+++++|+++++++++.......  
T Consensus        76 ~vGdrV~v~~~~~cg~c~~C~~g~~~~c~~~~~~~~~g~~~~G~~aEy~~vp~a~~~l~~iP~~~~~~~~~~~~~~~~--  153 (177)
T d1jqba1          76 KPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDGVFGEYFHVNDADMNLAILPKDVDLSKLVTHVYHGF--  153 (177)
T ss_dssp             CTTCEEEECSCCCCSSSHHHHTTCGGGTTSTTTTCCBTTTBCCSSBSSEEESSHHHHCEECCTTSCGGGGEEEEEESG--
T ss_pred             cCCCcEEEeeeeccccccchhhhhhcccccccccccccCCCChhcCeeEEEEhhhCeEEECCCCcchHHHHHHHHHHH--
Confidence            9999998532                             13589999999986  46999999999998876544322  


Q ss_pred             HHHHHhhcCCCCCCEEEEeCCCcHHHHHHH
Q psy2960         202 YRMLKDYNSLSPGDVVIQNGANSACGQNVI  231 (405)
Q Consensus       202 ~~al~~~~~~~~g~~VLI~ga~G~vG~~ai  231 (405)
                       .++        ++.|||.|+ |++|+.++
T Consensus       154 -~~~--------~~~vlv~g~-gp~gl~aa  173 (177)
T d1jqba1         154 -DHI--------EEALLLMKD-KPKDLIKA  173 (177)
T ss_dssp             -GGH--------HHHHHHHHH-CCTTCSEE
T ss_pred             -HHh--------cCceEEECC-CHHHhhee
Confidence             222        344777777 77776543

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.94  E-value=1.7e-27  Score=206.62  Aligned_cols=143  Identities=20%  Similarity=0.315  Sum_probs=123.7

Q ss_pred             ccceeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCC
Q psy2960          70 SYLANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDV  149 (405)
Q Consensus        70 ~~~~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v  149 (405)
                      ..||||++++++++|   ++++++|.|+|+++||||||.|+|||++|++++.|.++.  .+|.++|||++|+|+++|+++
T Consensus         6 ~~~~KAav~~~~g~~---l~i~ev~~P~p~~~eVlVkv~a~gICgsDlh~~~G~~~~--~~P~i~GHE~~G~Vv~~G~~v   80 (198)
T d1p0fa1           6 DITCKAAVAWEPHKP---LSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPS--KFPVILGHEAVGVVESIGAGV   80 (198)
T ss_dssp             CEEEEEEEBSSTTSC---CEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCC--CSSBCCCCCEEEEEEEECTTC
T ss_pred             ceEEEEEEEccCCCC---CEEEEEECCCCCCCEEEEEEEEEEEecccceeeeecccc--ccccccceeeeeeeeecCccc
Confidence            458999999999987   999999999999999999999999999999999998775  689999999999999999999


Q ss_pred             CCCCCCCEEEecC-----------------------------------------------CCCCcccceEeecccceEEc
Q psy2960         150 SSLAVGDHVIPDT-----------------------------------------------QHLGTWRNYGKFNHDVLMKV  182 (405)
Q Consensus       150 ~~~~~GdrV~~~~-----------------------------------------------~~~G~~a~~~~v~~~~~~~i  182 (405)
                      +++++||||+..+                                               ...|+|+||+.+++..++++
T Consensus        81 ~~~~~GdrV~~~~~~~Cg~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~faey~~v~~~~~~ki  160 (198)
T d1p0fa1          81 TCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFTCRGKPIYNLMGTSTFTEYTVVADIAVAKI  160 (198)
T ss_dssp             CSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEEETTEEEBCSTTTCCSBSEEEEETTSEEEE
T ss_pred             ccCcCCCEEEEEeeccccccccccccccccchhhhccccccccCCCceeEeeCCeeccccCCCccceeeEEecHHHEEEC
Confidence            9999999998642                                               01378999999999999999


Q ss_pred             CCCCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHH
Q psy2960         183 PKDIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQ  228 (405)
Q Consensus       183 P~~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~  228 (405)
                      |++++++.++...+.+.          .+.++++|||.|+ |++|+
T Consensus       161 p~~~~~~~~~~~~~~~~----------~v~~~~~vlv~G~-G~iGl  195 (198)
T d1p0fa1         161 DPKINVNFLVSTKLTLD----------QINKAFELLSSGQ-GVRSI  195 (198)
T ss_dssp             CTTSCGGGGEEEEECGG----------GHHHHHHHTTTSS-CSEEE
T ss_pred             CCCCCHHHHHHhhcchh----------hcCCCCEEEEECC-CcceE
Confidence            99999887766554433          2335566888887 88775

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.94  E-value=1.6e-26  Score=196.86  Aligned_cols=168  Identities=18%  Similarity=0.186  Sum_probs=143.2

Q ss_pred             ChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE
Q psy2960         187 ALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV  266 (405)
Q Consensus       187 s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v  266 (405)
                      +++.|++++|++.|||+++.+.++++||++|||+|+ |++|++++|+|+.+|+++++++++   .+++++.++++|++++
T Consensus         2 P~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~---~~~k~~~a~~~Ga~~~   77 (174)
T d1f8fa2           2 PIELLGPLGCGIQTGAGACINALKVTPASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDI---VESRLELAKQLGATHV   77 (174)
T ss_dssp             CGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEES---CHHHHHHHHHHTCSEE
T ss_pred             CHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCC-CHHHhhhhhcccccccceeeeecc---HHHHHHHHHHcCCeEE
Confidence            567899999999999999988899999999999998 999999999999999999888744   3567899999999999


Q ss_pred             eChhh--HHH-HhhhcCCCCCcEEEECCCchhH-HHHHHhcccCCEEEEEeccC-CCCcccCcccccccCeEEEEEecch
Q psy2960         267 FTEEE--LRN-ISRDASIPKPKLALNCVGGNSA-TNLLRTLVSKGVMVTYGGMS-REPVQIPTSAFIFKDITLRGHWMTR  341 (405)
Q Consensus       267 ~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~~-~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~k~~~~~g~~~~~  341 (405)
                      +|+++  +.+ ++++|++ ++|+||||+|++.. ..++++++++|+++.+|... ..+.+++...++.|++++.|+++++
T Consensus        78 i~~~~~~~~~~i~~~t~g-g~D~vid~~G~~~~~~~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~k~~~i~Gs~~g~  156 (174)
T d1f8fa2          78 INSKTQDPVAAIKEITDG-GVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGS  156 (174)
T ss_dssp             EETTTSCHHHHHHHHTTS-CEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGGG
T ss_pred             EeCCCcCHHHHHHHHcCC-CCcEEEEcCCcHHHHHHHHhcccCceEEEEEeecCCCcccccCHHHHHHCCCEEEEEEecC
Confidence            98754  555 8888876 99999999998655 67799999999999998643 3445778888899999999998765


Q ss_pred             hhhhhccHHHHHHHHHHHHHHHHcCc
Q psy2960         342 WQKENKESAERKSMMNELTEMMRTGK  367 (405)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~g~  367 (405)
                      +.        .+++++++++++++|+
T Consensus       157 ~~--------~~~~~~~~~~l~~~Gk  174 (174)
T d1f8fa2         157 GS--------PKKFIPELVRLYQQGK  174 (174)
T ss_dssp             SC--------HHHHHHHHHHHHHTTS
T ss_pred             CC--------hHHHHHHHHHHHHcCC
Confidence            32        2456899999999986

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.94  E-value=1.9e-26  Score=195.87  Aligned_cols=166  Identities=20%  Similarity=0.249  Sum_probs=141.8

Q ss_pred             CChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE
Q psy2960         186 IALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY  265 (405)
Q Consensus       186 ~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~  265 (405)
                      +|+.|||+++|+++|||+++.+ +++++|++|+|+|++|++|++++|+++++|+..+++++.   .+++++.++++|+++
T Consensus         1 l~~~eAA~l~c~~~Ta~~al~~-~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~---~~~~~~~~~~~Ga~~   76 (170)
T d1jvba2           1 LNAVEAAPLTCSGITTYRAVRK-ASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDV---REEAVEAAKRAGADY   76 (170)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHH-TTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEES---SHHHHHHHHHHTCSE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEEEeccccceeeeeeccccccccccccccc---chhhHHHHHHcCCce
Confidence            5789999999999999999966 899999999999988999999999999999855555533   356789999999999


Q ss_pred             EeChhh--HHH-HhhhcCCCCCcEEEECCCchhH-HHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecch
Q psy2960         266 VFTEEE--LRN-ISRDASIPKPKLALNCVGGNSA-TNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTR  341 (405)
Q Consensus       266 v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~  341 (405)
                      ++++++  +.+ +++.+.+.++|++|||+|++.. ..++++++++|+++.+|. ...+.+++...++.|++++.|++.++
T Consensus        77 ~i~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~-~~~~~~~~~~~~~~k~i~i~Gs~~~~  155 (170)
T d1jvba2          77 VINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGL-FGADLHYHAPLITLSEIQFVGSLVGN  155 (170)
T ss_dssp             EEETTTSCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCS-SCCCCCCCHHHHHHHTCEEEECCSCC
T ss_pred             eeccCCcCHHHHHHHHhhcccchhhhcccccchHHHhhhhhcccCCEEEEecc-ccCccccCHHHHHhCCcEEEEEecCC
Confidence            997654  555 8888999999999999998765 567999999999999984 34456788888899999999998764


Q ss_pred             hhhhhccHHHHHHHHHHHHHHHHcCc
Q psy2960         342 WQKENKESAERKSMMNELTEMMRTGK  367 (405)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~g~  367 (405)
                                 .++++++++++++|+
T Consensus       156 -----------~~d~~~~l~lv~~GK  170 (170)
T d1jvba2         156 -----------QSDFLGIMRLAEAGK  170 (170)
T ss_dssp             -----------HHHHHHHHHHHHTTS
T ss_pred             -----------HHHHHHHHHHHHcCC
Confidence                       355888899999986

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=1e-25  Score=191.82  Aligned_cols=132  Identities=19%  Similarity=0.238  Sum_probs=111.9

Q ss_pred             eeEEEEccCCCCccceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEcCCCCCC
Q psy2960          73 ANKLVYNQHGTPLRVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVGSDVSSL  152 (405)
Q Consensus        73 ~~a~~~~~~g~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG~~v~~~  152 (405)
                      |||++..++++|   |+++++|.|+|++|||||||.++|||++|++.+.|.++. ..+|+++|||++|+|+++|++|+++
T Consensus         1 m~a~~~~~~~~p---l~i~ev~~P~pg~geVlVkv~a~gic~sDl~~~~g~~~~-~~~P~i~GhE~~G~V~~vG~~V~~~   76 (179)
T d1uufa1           1 IKAVGAYSAKQP---LEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAG-TVYPCVPGHEIVGRVVAVGDQVEKY   76 (179)
T ss_dssp             CEEEEBSSTTSC---CEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSC-CCSSBCCCCCEEEEEEEECTTCCSC
T ss_pred             CeEEEEccCCCC---CEEEEecCCCCCCCEEEEEEEEECCCCCcceeeeeeecc-ccccccccccccccchhhccccccC
Confidence            899999999988   999999999999999999999999999999999997665 4789999999999999999999999


Q ss_pred             CCCCEEEecC-----------------------------------CCCCcccceEeecccceEEcCCCCChhhhccCCCc
Q psy2960         153 AVGDHVIPDT-----------------------------------QHLGTWRNYGKFNHDVLMKVPKDIALTEISGITSN  197 (405)
Q Consensus       153 ~~GdrV~~~~-----------------------------------~~~G~~a~~~~v~~~~~~~iP~~~s~~~Aa~~~~~  197 (405)
                      ++||||...+                                   ...|+|+||+.+++++++++|+.....  +.. .+
T Consensus        77 ~vGdrV~v~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~GgfaEy~~v~~~~~~~ip~~~~~~--~~a-~~  153 (179)
T d1uufa1          77 APGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRVADIEM--IRA-DQ  153 (179)
T ss_dssp             CTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEETTTSBCSSTTSBCCCSSBSEEEEEGGGCEECCCCCEEE--ECG-GG
T ss_pred             CCCCEEEEcccccccCccccccCcccccCCCccccccccCCCCCcccccccceEEEechHHEEECCCCCcCh--hHh-ch
Confidence            9999996432                                   124899999999999999999664322  222 35


Q ss_pred             HHHHHHHHHhhcCCC
Q psy2960         198 PCTAYRMLKDYNSLS  212 (405)
Q Consensus       198 ~~ta~~al~~~~~~~  212 (405)
                      +.++++++.. +.++
T Consensus       154 l~~a~~a~~~-a~v~  167 (179)
T d1uufa1         154 INEAYERMLR-GDVK  167 (179)
T ss_dssp             HHHHHHHHHT-TCSS
T ss_pred             hHHHHHHHHH-hCcc
Confidence            6788888865 5553

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=4.9e-26  Score=196.09  Aligned_cols=172  Identities=16%  Similarity=0.228  Sum_probs=131.7

Q ss_pred             CChhhhccCCCcHHHHHHHHHhhcCCCCC--CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC
Q psy2960         186 IALTEISGITSNPCTAYRMLKDYNSLSPG--DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA  263 (405)
Q Consensus       186 ~s~~~Aa~~~~~~~ta~~al~~~~~~~~g--~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~  263 (405)
                      +|+.+.| ++++++|||++|.+.+++++|  ++|||+||+|+||++++|+||.+|+++++++.+.+  +++.+..+++|+
T Consensus         2 ~~~~~ga-lg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~--e~~~~l~~~~ga   78 (187)
T d1vj1a2           2 LSYFLGA-IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQ--EKCLFLTSELGF   78 (187)
T ss_dssp             GGGGGTT-TSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSH--HHHHHHHHHSCC
T ss_pred             ccHHHHH-hhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchH--HHHhhhhhcccc
Confidence            5666654 677899999999999999988  89999999999999999999999998776553322  344566778999


Q ss_pred             cEEeChhh--HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEeccCCCCcccC---------cccccccC
Q psy2960         264 DYVFTEEE--LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIP---------TSAFIFKD  331 (405)
Q Consensus       264 ~~v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~---------~~~~~~k~  331 (405)
                      ++++|+++  +.+ +++.+ +.|+|+|||++|++.+..++++++++|+++.+|..+......+         ...+..|+
T Consensus        79 d~vi~~~~~~~~~~~~~~~-~~GvDvv~D~vGg~~~~~~~~~l~~~G~iv~~G~~s~~~~~~~~~~~~~~~~~~~~~~k~  157 (187)
T d1vj1a2          79 DAAVNYKTGNVAEQLREAC-PGGVDVYFDNVGGDISNTVISQMNENSHIILCGQISQYNKDVPYPPPLPPAVEAIRKERN  157 (187)
T ss_dssp             SEEEETTSSCHHHHHHHHC-TTCEEEEEESSCHHHHHHHHTTEEEEEEEEEC------------CCCCCHHHHHHHHHTT
T ss_pred             eEEeeccchhHHHHHHHHh-ccCceEEEecCCchhHHHHhhhccccccEEEeccccccccccccCCchHHHHHHHHHhcc
Confidence            99999864  556 77776 5899999999999999999999999999999996443211111         12245689


Q ss_pred             eEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCc
Q psy2960         332 ITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGK  367 (405)
Q Consensus       332 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  367 (405)
                      ++++|+.+.++.      +.+.+.++++.+++++|+
T Consensus       158 i~~~g~~~~~~~------~~~~e~~~~l~~~i~~Gk  187 (187)
T d1vj1a2         158 ITRERFTVLNYK------DKFEPGILQLSQWFKEGK  187 (187)
T ss_dssp             CEEEECCGGGCG------GGHHHHHHHHHHHHHHTS
T ss_pred             eEEEEeEecchH------HHHHHHHHHHHHHHHCcC
Confidence            999998776543      233567899999999885

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.93  E-value=1.2e-25  Score=191.13  Aligned_cols=164  Identities=21%  Similarity=0.279  Sum_probs=139.6

Q ss_pred             ChhhhccCCCcHHHHHHHHHhhc-CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE
Q psy2960         187 ALTEISGITSNPCTAYRMLKDYN-SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY  265 (405)
Q Consensus       187 s~~~Aa~~~~~~~ta~~al~~~~-~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~  265 (405)
                      .+.|+|+++++++|||+++.+.. .++||++|||+|+ |++|++++|+|+++|+.+++++++.   +++++.++++|+++
T Consensus         5 ~l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~---~~k~~~~~~~ga~~   80 (172)
T d1h2ba2           5 KLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVK---EEKLKLAERLGADH   80 (172)
T ss_dssp             HHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESS---HHHHHHHHHTTCSE
T ss_pred             hHHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccch---hHHHHHHhhcccce
Confidence            36789999999999999998755 5899999999998 9999999999999999887777443   56789999999999


Q ss_pred             EeChhh-HHH-HhhhcCCCCCcEEEECCCchh-HHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchh
Q psy2960         266 VFTEEE-LRN-ISRDASIPKPKLALNCVGGNS-ATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRW  342 (405)
Q Consensus       266 v~~~~d-~~~-i~~~t~g~g~Dvvld~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~  342 (405)
                      ++++++ ..+ +.+.+++.++|+||||+|+.. ++.++++++++|+++.+|.  ..+.+++...++.|+++++|++.++ 
T Consensus        81 ~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~--~~~~~~~~~~l~~k~~~i~Gs~~~~-  157 (172)
T d1h2ba2          81 VVDARRDPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGY--GGELRFPTIRVISSEVSFEGSLVGN-  157 (172)
T ss_dssp             EEETTSCHHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEECCC--SSCCCCCHHHHHHTTCEEEECCSCC-
T ss_pred             eecCcccHHHHHHHhhCCCCceEEEEecCcchHHHHHHHHHhCCCEEEEEeC--cccccCCHHHHHhCCcEEEEEEecC-
Confidence            998754 334 778898999999999999875 5778999999999999994  2345678888899999999998765 


Q ss_pred             hhhhccHHHHHHHHHHHHHHHHcCc
Q psy2960         343 QKENKESAERKSMMNELTEMMRTGK  367 (405)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~g~  367 (405)
                                .+.++++++++++|+
T Consensus       158 ----------~~d~~~~l~l~~~GK  172 (172)
T d1h2ba2         158 ----------YVELHELVTLALQGK  172 (172)
T ss_dssp             ----------HHHHHHHHHHHHTTS
T ss_pred             ----------HHHHHHHHHHHHcCC
Confidence                      344788899999986

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=6.8e-26  Score=191.85  Aligned_cols=163  Identities=15%  Similarity=0.161  Sum_probs=135.3

Q ss_pred             ChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE
Q psy2960         187 ALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV  266 (405)
Q Consensus       187 s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v  266 (405)
                      +.+.||++.|++.|+|++++. ++++||++|+|+|+ |++|++++|+|+++|++|+++.++++    +++.++++|++++
T Consensus         2 p~e~AApl~cag~Ta~~al~~-~~~~~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~----k~~~a~~lGa~~~   75 (168)
T d1piwa2           2 PSHLAAPLLCGGLTVYSPLVR-NGCGPGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSR----KREDAMKMGADHY   75 (168)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHH-TTCSTTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSST----THHHHHHHTCSEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHH-hCcCCCCEEEEECC-CCcchhHHHHhhhccccccccccchh----HHHHhhccCCcEE
Confidence            457799999999999999976 79999999999998 99999999999999999999876654    4788999999999


Q ss_pred             eChhhHHH-HhhhcCCCCCcEEEECCCchh---HHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchh
Q psy2960         267 FTEEELRN-ISRDASIPKPKLALNCVGGNS---ATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRW  342 (405)
Q Consensus       267 ~~~~d~~~-i~~~t~g~g~Dvvld~~g~~~---~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~  342 (405)
                      +++.+..+ ....  ..++|+++||+++..   +..++++++++|+++.+|.. ..+..++...++.|++++.|++.++ 
T Consensus        76 i~~~~~~~~~~~~--~~~~d~vi~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~-~~~~~~~~~~~~~k~~~i~Gs~~g~-  151 (168)
T d1piwa2          76 IATLEEGDWGEKY--FDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIP-EQHEMLSLKPYGLKAVSISYSALGS-  151 (168)
T ss_dssp             EEGGGTSCHHHHS--CSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCC-CSSCCEEECGGGCBSCEEEECCCCC-
T ss_pred             eeccchHHHHHhh--hcccceEEEEecCCccchHHHHHHHhhccceEEEeccc-cccccccHHHHHhCCcEEEEEeeCC-
Confidence            98765333 3333  457999999988643   45678999999999999843 3445677788889999999988765 


Q ss_pred             hhhhccHHHHHHHHHHHHHHHHcCccc
Q psy2960         343 QKENKESAERKSMMNELTEMMRTGKLA  369 (405)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~g~l~  369 (405)
                                .+.++++++++++|+|+
T Consensus       152 ----------~~~~~e~l~li~~gkIk  168 (168)
T d1piwa2         152 ----------IKELNQLLKLVSEKDIK  168 (168)
T ss_dssp             ----------HHHHHHHHHHHHHTTCC
T ss_pred             ----------HHHHHHHHHHHHhCCCC
Confidence                      34578899999999885

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=2.7e-26  Score=194.88  Aligned_cols=170  Identities=17%  Similarity=0.226  Sum_probs=137.6

Q ss_pred             CChhhhccCCCcHHHHHHHHH---hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcC
Q psy2960         186 IALTEISGITSNPCTAYRMLK---DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG  262 (405)
Q Consensus       186 ~s~~~Aa~~~~~~~ta~~al~---~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg  262 (405)
                      +|+.|||++|++++|||++++   +.+..+++++|||+||+|+||++++|+||.+|++|+++++++++    .+.++++|
T Consensus         1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k----~~~~~~lG   76 (177)
T d1o89a2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGREST----HEYLKSLG   76 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG----HHHHHHHT
T ss_pred             CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhH----HHHHHhhc
Confidence            588999999999999997764   43444556799999999999999999999999999999988765    57888999


Q ss_pred             CcEEeChhhHHHHhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchh
Q psy2960         263 ADYVFTEEELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRW  342 (405)
Q Consensus       263 ~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~  342 (405)
                      +|+++|+++....+.+ .....|.++|++|++.+..++++++++|+++.+|.......+.+...++.|++++.|++....
T Consensus        77 ad~vi~~~~~~~~~~l-~~~~~~~vvD~Vgg~~~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~k~~~i~G~~~~~~  155 (177)
T d1o89a2          77 ASRVLPRDEFAESRPL-EKQVWAGAIDTVGDKVLAKVLAQMNYGGCVAACGLAGGFTLPTTVMPFILRNVRLQGVDSVMT  155 (177)
T ss_dssp             EEEEEEGGGSSSCCSS-CCCCEEEEEESSCHHHHHHHHHTEEEEEEEEECCCTTCSCCCCCSHHHHHHCCEEEECCSSSC
T ss_pred             cccccccccHHHHHHH-HhhcCCeeEEEcchHHHHHHHHHhccccceEeecccCCccccccHHHHHHCCCeEEEEecccC
Confidence            9999998763322222 234579999999999999999999999999999987777777888888899999999765432


Q ss_pred             hhhhccHHHHHHHHHHHHHHHHc
Q psy2960         343 QKENKESAERKSMMNELTEMMRT  365 (405)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~  365 (405)
                           .+++..+.++++.+.+.+
T Consensus       156 -----~~~~~~~~~~~L~~~l~~  173 (177)
T d1o89a2         156 -----PPERRAQAWQRLVADLPE  173 (177)
T ss_dssp             -----CHHHHHHHHHHHHHHSCH
T ss_pred             -----CHHHHHHHHHHHHHhccc
Confidence                 235666667777665544

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.93  E-value=5.6e-25  Score=186.84  Aligned_cols=167  Identities=16%  Similarity=0.135  Sum_probs=132.7

Q ss_pred             CChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE
Q psy2960         186 IALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY  265 (405)
Q Consensus       186 ~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~  265 (405)
                      +++|+|+.+++++.|+|+++.. +++++|++|||+|+ |++|++++|+|+.+|++.+++++   ..++|++.++++|+++
T Consensus         1 ip~e~A~~l~~~~~ta~~a~~~-a~~~~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d---~~~~r~~~a~~lGa~~   75 (174)
T d1jqba2           1 MPLENAVMITDMMTTGFHGAEL-ADIEMGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVG---SRPICVEAAKFYGATD   75 (174)
T ss_dssp             SCHHHHHTTTTHHHHHHHHHHH-TTCCTTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEEC---CCHHHHHHHHHHTCSE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHH-hCCCCCCEEEEEcC-Ccchhhhhhhhhccccccccccc---chhhhHHHHHhhCccc
Confidence            5789999999999999999865 89999999999988 99999999999999996444442   3356789999999999


Q ss_pred             EeChhh--HHH-HhhhcCCCCCcEEEECCCchh-HHHHHHhcccCCEEEEEeccCCC-CcccCc--ccccccCeEEEEEe
Q psy2960         266 VFTEEE--LRN-ISRDASIPKPKLALNCVGGNS-ATNLLRTLVSKGVMVTYGGMSRE-PVQIPT--SAFIFKDITLRGHW  338 (405)
Q Consensus       266 v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~--~~~~~k~~~~~g~~  338 (405)
                      ++|+++  +.+ +++.|++.|+|+||||+|++. +..++++++++|+++.+|..... ...++.  .....+++++.++.
T Consensus        76 ~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~  155 (174)
T d1jqba2          76 ILNYKNGHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGL  155 (174)
T ss_dssp             EECGGGSCHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSSSEEEEETTTTGGGTBCCEEEEBC
T ss_pred             cccccchhHHHHHHHHhhccCcceEEEccCCHHHHHHHHHHHhcCCEEEEEeecCCCCcCcCcHhHHHHHhCccEEEEec
Confidence            998865  555 999999999999999999865 56789999999999999854332 222222  22345788999876


Q ss_pred             cchhhhhhccHHHHHHHHHHHHHHHHcCc
Q psy2960         339 MTRWQKENKESAERKSMMNELTEMMRTGK  367 (405)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  367 (405)
                      ....          +...+++.++++.|+
T Consensus       156 ~~~~----------r~~~e~l~~li~~gk  174 (174)
T d1jqba2         156 CPGG----------RLRAERLRDMVVYNR  174 (174)
T ss_dssp             CCCH----------HHHHHHHHHHHHTTS
T ss_pred             CCCC----------cccHHHHHHHHHcCC
Confidence            5431          233567788888875

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.93  E-value=2.7e-25  Score=188.64  Aligned_cols=167  Identities=17%  Similarity=0.250  Sum_probs=135.8

Q ss_pred             ChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE
Q psy2960         187 ALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV  266 (405)
Q Consensus       187 s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v  266 (405)
                      ++++||.++|++.|+|+++.+.+++++||+|+|+|+ |++|++++|+|+++|++++++++..   ++|++.++++|++++
T Consensus         2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~---~~r~~~a~~~Ga~~~   77 (174)
T d1e3ia2           2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDIN---GEKFPKAKALGATDC   77 (174)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSC---GGGHHHHHHTTCSEE
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccc---hHHHHHHHHhCCCcc
Confidence            578999999999999999988899999999999988 9999999999999999877777443   446899999999999


Q ss_pred             eChhh---HHH-HhhhcCCCCCcEEEECCCchhH-HHHHHhcccC-CEEEEEeccCCCCcccCcccccccCeEEEEEecc
Q psy2960         267 FTEEE---LRN-ISRDASIPKPKLALNCVGGNSA-TNLLRTLVSK-GVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMT  340 (405)
Q Consensus       267 ~~~~d---~~~-i~~~t~g~g~Dvvld~~g~~~~-~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~  340 (405)
                      +|+..   ... +.+.+.+.|+|+||||+|.+.. ..++++++++ |+++.+|.. ..+.+++...++ .+.++.|++++
T Consensus        78 i~~~~~~~~~~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~-~~~~~i~~~~~~-~~k~i~Gs~~G  155 (174)
T d1e3ia2          78 LNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAK-VDEMTIPTVDVI-LGRSINGTFFG  155 (174)
T ss_dssp             ECGGGCSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCS-SSEEEEEHHHHH-TTCEEEECSGG
T ss_pred             cCCccchhhhhhhHhhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCC-CCccccchHHHh-ccCEEEEEEee
Confidence            98643   233 6666778899999999999755 5789999996 999999854 334456555554 46789998877


Q ss_pred             hhhhhhccHHHHHHHHHHHHHHHHcCc
Q psy2960         341 RWQKENKESAERKSMMNELTEMMRTGK  367 (405)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~g~  367 (405)
                      ++.        ..+.+.++++++++|+
T Consensus       156 s~~--------~~~d~p~li~l~~~GK  174 (174)
T d1e3ia2         156 GWK--------SVDSVPNLVSDYKNKK  174 (174)
T ss_dssp             GCC--------HHHHHHHHHHHHHTTS
T ss_pred             CCC--------hHHHHHHHHHHHHCcC
Confidence            642        1456788999999885

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.92  E-value=1e-25  Score=189.55  Aligned_cols=140  Identities=23%  Similarity=0.291  Sum_probs=122.6

Q ss_pred             cHHHHHH---HHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHH
Q psy2960         197 NPCTAYR---MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELR  273 (405)
Q Consensus       197 ~~~ta~~---al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~  273 (405)
                      +++|||.   +|.+.+..++|++|||+||+|+||++++|+||++||+|+++++++++    .+.++++|++++++++++.
T Consensus         4 aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k----~~~~~~lGad~vi~~~~~~   79 (167)
T d1tt7a2           4 AGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREA----ADYLKQLGASEVISREDVY   79 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSST----HHHHHHHTCSEEEEHHHHC
T ss_pred             hHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHH----HHHHHhhcccceEeccchh
Confidence            4667764   45565667789999999999999999999999999999999998776    6788999999999988765


Q ss_pred             H-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecc
Q psy2960         274 N-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMT  340 (405)
Q Consensus       274 ~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~  340 (405)
                      . ..+.+.+.++|+|||++|++.+..++++|+++|+++.+|...+.+.+++...++.|+++++|+...
T Consensus        80 ~~~~~~~~~~gvd~vid~vgg~~~~~~~~~l~~~G~iv~~G~~~g~~~~~~~~~l~~k~~~i~G~~~~  147 (167)
T d1tt7a2          80 DGTLKALSKQQWQGAVDPVGGKQLASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSV  147 (167)
T ss_dssp             SSCCCSSCCCCEEEEEESCCTHHHHHHHTTEEEEEEEEECCCSSCSCEEECSHHHHTSCCEEEECCSS
T ss_pred             chhhhcccCCCceEEEecCcHHHHHHHHHHhccCceEEEeeccCCCcccCCHHHHHHCCcEEEEEecC
Confidence            5 666677889999999999999999999999999999999888777788888899999999997654

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.92  E-value=7.7e-25  Score=186.85  Aligned_cols=169  Identities=15%  Similarity=0.173  Sum_probs=133.8

Q ss_pred             ChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE
Q psy2960         187 ALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV  266 (405)
Q Consensus       187 s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v  266 (405)
                      ++++||+++|++.|+|+++.+.++++|||+|||+|+ ||+|++++|+|+++|+++++++++.+   ++++.++++|++++
T Consensus         2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~---~k~~~ak~lGa~~~   77 (176)
T d2fzwa2           2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINK---DKFARAKEFGATEC   77 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCG---GGHHHHHHHTCSEE
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccH---HHHHHHHHhCCcEE
Confidence            478999999999999999988899999999999998 89999999999999998777775543   35789999999999


Q ss_pred             eChhh----HHHHhhhcCCCCCcEEEECCCchhHH-HHHHhcccCCEEEEEeccCCC-CcccCcccccccCeEEEEEecc
Q psy2960         267 FTEEE----LRNISRDASIPKPKLALNCVGGNSAT-NLLRTLVSKGVMVTYGGMSRE-PVQIPTSAFIFKDITLRGHWMT  340 (405)
Q Consensus       267 ~~~~d----~~~i~~~t~g~g~Dvvld~~g~~~~~-~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~k~~~~~g~~~~  340 (405)
                      +|+.+    ..+..+.+.+.|+|+|||++|++... .++.+++++|+++.++..... ....+....+.+++++.|++++
T Consensus        78 i~~~~~~~~~~~~~~~~~~~g~D~vid~~G~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G  157 (176)
T d2fzwa2          78 INPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFG  157 (176)
T ss_dssp             ECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGG
T ss_pred             EeCCchhhHHHHHHHHHcCCCCcEeeecCCCHHHHHHHHHhhcCCceeEEEEeeccccccccccHHHHHCCCEEEEEeee
Confidence            98754    22355556677999999999987765 567888899888887654332 2333334445688999999876


Q ss_pred             hhhhhhccHHHHHHHHHHHHHHHHcCc
Q psy2960         341 RWQKENKESAERKSMMNELTEMMRTGK  367 (405)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~g~  367 (405)
                      +..        ..+++.++++++++|+
T Consensus       158 ~~~--------~~~d~~~li~l~~~GK  176 (176)
T d2fzwa2         158 GWK--------SVESVPKLVSEYMSKK  176 (176)
T ss_dssp             GCC--------HHHHHHHHHHHHHTTS
T ss_pred             CCc--------HHHHHHHHHHHHHcCC
Confidence            632        1456888999999886

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.92  E-value=3e-25  Score=187.90  Aligned_cols=165  Identities=18%  Similarity=0.237  Sum_probs=131.6

Q ss_pred             CCChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc
Q psy2960         185 DIALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD  264 (405)
Q Consensus       185 ~~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~  264 (405)
                      +.+++++|.+.|++.|+|++++. ++++||++|+|+|+ |++|++++|+|+++|++++++.++++    ++++++++|++
T Consensus         3 ~~~~a~~Apl~Cag~Tay~al~~-~~~~~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~----~~~~a~~lGad   76 (168)
T d1uufa2           3 QEQLAAVAPLLCAGITTYSPLRH-WQAGPGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEA----KREAAKALGAD   76 (168)
T ss_dssp             GGGHHHHGGGGTHHHHHHHHHHH-TTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGG----GHHHHHHHTCS
T ss_pred             cccHHHHHHHHhHHHHHHHHHHH-hCCCCCCEEEEecc-chHHHHHHHHhhcccccchhhccchh----HHHHHhccCCc
Confidence            34678899999999999999965 89999999999997 99999999999999999998776544    36888999999


Q ss_pred             EEeChhhHHHHhhhcCCCCCcEEEECCCchh-HHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchhh
Q psy2960         265 YVFTEEELRNISRDASIPKPKLALNCVGGNS-ATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRWQ  343 (405)
Q Consensus       265 ~v~~~~d~~~i~~~t~g~g~Dvvld~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~~  343 (405)
                      +++|+.+....  .+..+++|++|||+|++. +..++++++++|+++.+|........++...++.|++++.|++.++  
T Consensus        77 ~~i~~~~~~~~--~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~l~~k~~~i~Gs~~~~--  152 (168)
T d1uufa2          77 EVVNSRNADEM--AAHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGG--  152 (168)
T ss_dssp             EEEETTCHHHH--HTTTTCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC-------CHHHHHTTTCEEEECCSCC--
T ss_pred             EEEECchhhHH--HHhcCCCceeeeeeecchhHHHHHHHHhcCCEEEEeccCCCCcccccHHHHHHCCcEEEEEeecC--
Confidence            99998764431  122568999999999864 6788999999999999996555455667777888999999998765  


Q ss_pred             hhhccHHHHHHHHHHHHHHHHcCcc
Q psy2960         344 KENKESAERKSMMNELTEMMRTGKL  368 (405)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~g~l  368 (405)
                               .+.++++++++++++|
T Consensus       153 ---------~~d~~e~l~l~a~~~I  168 (168)
T d1uufa2         153 ---------IPETQEMLDFCAEHGI  168 (168)
T ss_dssp             ---------HHHHHHHHHHHHHHTC
T ss_pred             ---------HHHHHHHHHHHHHcCC
Confidence                     3446778888877654

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=3.8e-25  Score=186.94  Aligned_cols=162  Identities=20%  Similarity=0.274  Sum_probs=132.1

Q ss_pred             CChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE
Q psy2960         186 IALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY  265 (405)
Q Consensus       186 ~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~  265 (405)
                      ++|++||+++|+++|||+++++ +++++|++|+|+|+ |++|++++|+||.+|++|+++.++    +++++.++++|+++
T Consensus         1 v~f~~aA~l~ca~~Ta~~al~~-~~~~~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~----~~~~~~a~~~Ga~~   74 (166)
T d1llua2           1 VEFAEIAPILCAGVTVYKGLKQ-TNARPGQWVAISGI-GGLGHVAVQYARAMGLHVAAIDID----DAKLELARKLGASL   74 (166)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHH-HTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESC----HHHHHHHHHTTCSE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEEeec-cccHHHHHHHHHHcCCccceecch----hhHHHhhhccCccc
Confidence            5899999999999999999976 89999999999998 999999999999999998888644    45689999999999


Q ss_pred             EeChhh--HHH-HhhhcCCCCCcEEEECCC-chhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecch
Q psy2960         266 VFTEEE--LRN-ISRDASIPKPKLALNCVG-GNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTR  341 (405)
Q Consensus       266 v~~~~d--~~~-i~~~t~g~g~Dvvld~~g-~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~  341 (405)
                      ++|+++  +.+ +.+.+.  +.|.++++++ ++.+..++++++++|+++.+|.. ..+.+++...++.|++++.|++.++
T Consensus        75 ~i~~~~~~~~~~~~~~~~--g~~~~i~~~~~~~~~~~~~~~l~~~G~iv~~G~~-~~~~~~~~~~~~~k~~~i~Gs~~~~  151 (166)
T d1llua2          75 TVNARQEDPVEAIQRDIG--GAHGVLVTAVSNSAFGQAIGMARRGGTIALVGLP-PGDFPTPIFDVVLKGLHIAGSIVGT  151 (166)
T ss_dssp             EEETTTSCHHHHHHHHHS--SEEEEEECCSCHHHHHHHHTTEEEEEEEEECCCC-SSEEEEEHHHHHHTTCEEEECCSCC
T ss_pred             cccccchhHHHHHHHhhc--CCcccccccccchHHHHHHHHhcCCcEEEEEEec-CCCccCCHHHHHhCCcEEEEEeecC
Confidence            998654  444 666543  4555555554 55667789999999999999854 3456677888889999999988764


Q ss_pred             hhhhhccHHHHHHHHHHHHHHHHcCc
Q psy2960         342 WQKENKESAERKSMMNELTEMMRTGK  367 (405)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~g~  367 (405)
                                 .++++++++++++|.
T Consensus       152 -----------~~d~~e~l~l~~~Gl  166 (166)
T d1llua2         152 -----------RADLQEALDFAGEGL  166 (166)
T ss_dssp             -----------HHHHHHHHHHHHTTS
T ss_pred             -----------HHHHHHHHHHHHCcC
Confidence                       344788889998873

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.92  E-value=4.4e-25  Score=186.93  Aligned_cols=165  Identities=21%  Similarity=0.287  Sum_probs=135.5

Q ss_pred             CChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE
Q psy2960         186 IALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY  265 (405)
Q Consensus       186 ~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~  265 (405)
                      +|++|||+++++++|||++++. .+++||++|||+|+ |++|++++|+|+..|++|+++.++    ++++++++++|++.
T Consensus         1 ls~eeAA~l~~~~~Ta~~al~~-~~~~~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~~----~~r~~~~k~~Ga~~   74 (168)
T d1rjwa2           1 LSFEEAAPIFCAGVTTYKALKV-TGAKPGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIG----DEKLELAKELGADL   74 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHHHH-HTCCTTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSC----HHHHHHHHHTTCSE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEEeec-ccchhhhhHHHhcCCCeEeccCCC----HHHhhhhhhcCcce
Confidence            6899999999999999999976 79999999999987 999999999999999998888644    45688999999999


Q ss_pred             EeChhh--HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecchh
Q psy2960         266 VFTEEE--LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTRW  342 (405)
Q Consensus       266 v~~~~d--~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~~  342 (405)
                      ++++.+  +.+ +++.|.+ ..|+|+++.+.+.+..++++++++|+++.+|.. ..+.+++...++.+++++.|++.+. 
T Consensus        75 ~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~a~~~l~~~G~i~~~g~~-~~~~~~~~~~~~~~~~~i~gs~~~~-  151 (168)
T d1rjwa2          75 VVNPLKEDAAKFMKEKVGG-VHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLP-PEEMPIPIFDTVLNGIKIIGSIVGT-  151 (168)
T ss_dssp             EECTTTSCHHHHHHHHHSS-EEEEEESSCCHHHHHHHHHHEEEEEEEEECCCC-SSEEEEEHHHHHHTTCEEEECCSCC-
T ss_pred             ecccccchhhhhcccccCC-CceEEeecCCHHHHHHHHHHhccCCceEecccc-cCCCCCCHHHHHHCCcEEEEEeeCC-
Confidence            998754  555 7777743 334444444445567889999999999999854 4455677778889999999987654 


Q ss_pred             hhhhccHHHHHHHHHHHHHHHHcCccc
Q psy2960         343 QKENKESAERKSMMNELTEMMRTGKLA  369 (405)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~g~l~  369 (405)
                                .++++++++++++|+|+
T Consensus       152 ----------~~~~~~~l~l~~~Gkik  168 (168)
T d1rjwa2         152 ----------RKDLQEALQFAAEGKVK  168 (168)
T ss_dssp             ----------HHHHHHHHHHHHTTSCC
T ss_pred             ----------HHHHHHHHHHHHhCCCC
Confidence                      34588899999999985

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=1.1e-24  Score=186.82  Aligned_cols=164  Identities=21%  Similarity=0.292  Sum_probs=131.2

Q ss_pred             ChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCcchHHHHHHHHHcCCcE
Q psy2960         187 ALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADY  265 (405)
Q Consensus       187 s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~~~~~~~~~~~~lg~~~  265 (405)
                      +++.+|++.|+++|||+++.+.+++++|++|||+|+ |++|++++|+|+++|++ |+++.+    .+++++.++++|+++
T Consensus         2 d~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~----~~~~~~~a~~lGa~~   76 (182)
T d1vj0a2           2 DLDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAG----SPNRLKLAEEIGADL   76 (182)
T ss_dssp             CHHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEES----CHHHHHHHHHTTCSE
T ss_pred             cHHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECC-Cccchhheeccccccccccccccc----ccccccccccccceE
Confidence            356788999999999999998889999999999998 99999999999999995 555543    355689999999999


Q ss_pred             EeChhh-----HHH-HhhhcCCCCCcEEEECCCchh-HHHHHHhcccCCEEEEEeccC-CCCcccCc-ccccccCeEEEE
Q psy2960         266 VFTEEE-----LRN-ISRDASIPKPKLALNCVGGNS-ATNLLRTLVSKGVMVTYGGMS-REPVQIPT-SAFIFKDITLRG  336 (405)
Q Consensus       266 v~~~~d-----~~~-i~~~t~g~g~Dvvld~~g~~~-~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~-~~~~~k~~~~~g  336 (405)
                      ++|+++     ..+ +++.+++.|+|+||||+|++. +..++++++++|+++.+|... ..+.+++. ..++.|+++++|
T Consensus        77 vi~~~~~~~~~~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~~~l~~k~l~i~G  156 (182)
T d1vj0a2          77 TLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKG  156 (182)
T ss_dssp             EEETTTSCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCCCEEECHHHHTTTTTCEEEE
T ss_pred             EEeccccchHHHHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcCCCEEEEEeecCCCCccccccHHHHHHCCcEEEE
Confidence            998653     233 788899999999999999865 467899999999999998543 23334443 346789999999


Q ss_pred             EecchhhhhhccHHHHHHHHHHHHHHHHcC
Q psy2960         337 HWMTRWQKENKESAERKSMMNELTEMMRTG  366 (405)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  366 (405)
                      ++.++           ...+++++++++++
T Consensus       157 ~~~~~-----------~~~~~~~~~~i~~~  175 (182)
T d1vj0a2         157 IWVSD-----------TSHFVKTVSITSRN  175 (182)
T ss_dssp             CCCCC-----------HHHHHHHHHHHHTC
T ss_pred             EEeCC-----------HHHHHHHHHHHHHC
Confidence            98765           23356666666654

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.92  E-value=3.5e-24  Score=181.98  Aligned_cols=167  Identities=19%  Similarity=0.207  Sum_probs=131.1

Q ss_pred             ChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE
Q psy2960         187 ALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV  266 (405)
Q Consensus       187 s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v  266 (405)
                      ++.|||++.|++.|+|+++.+.+++++||+|||+|+ |++|++++|+|+++|++.++++++.   ++|++.++++|++++
T Consensus         1 ~P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~---~~kl~~a~~lGa~~~   76 (174)
T d1p0fa2           1 APLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTH---KDKFPKAIELGATEC   76 (174)
T ss_dssp             CCGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSC---GGGHHHHHHTTCSEE
T ss_pred             CHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECC-CchhHHHHHHHHHcCCceeeccCCh---HHHHHHHHHcCCcEE
Confidence            356899999999999999988899999999999998 9999999999999999777776443   446899999999999


Q ss_pred             eChhh----HHHHhhhcCCCCCcEEEECCCchhH-HHHHHhccc-CCEEEEEeccCC-CCcccCcccccccCeEEEEEec
Q psy2960         267 FTEEE----LRNISRDASIPKPKLALNCVGGNSA-TNLLRTLVS-KGVMVTYGGMSR-EPVQIPTSAFIFKDITLRGHWM  339 (405)
Q Consensus       267 ~~~~d----~~~i~~~t~g~g~Dvvld~~g~~~~-~~~~~~l~~-~G~~v~~g~~~~-~~~~~~~~~~~~k~~~~~g~~~  339 (405)
                      +|+++    ..++.+.+.++|+|++|||+|+... ..++..+++ +|+++.+|.... ...+++... +.++++++|+++
T Consensus        77 i~~~~~d~~~~~~~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~~~~~~~~~~~-~~~~~~i~Gs~~  155 (174)
T d1p0fa2          77 LNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLL-LLTGRSLKGSVF  155 (174)
T ss_dssp             ECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHH-HHTTCEEEECSG
T ss_pred             EcCCCchhHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEecCccccccCHHH-HhCCCEEEEEEe
Confidence            98754    2336666677899999999998765 467777766 599999985432 223333333 357889999987


Q ss_pred             chhhhhhccHHHHHHHHHHHHHHHHcCc
Q psy2960         340 TRWQKENKESAERKSMMNELTEMMRTGK  367 (405)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~  367 (405)
                      +++.         .++++++++++++|+
T Consensus       156 G~~~---------~~d~~~lidl~~~gK  174 (174)
T d1p0fa2         156 GGFK---------GEEVSRLVDDYMKKK  174 (174)
T ss_dssp             GGCC---------GGGHHHHHHHHHTTS
T ss_pred             CCCC---------HHHHHHHHHHHHcCC
Confidence            6532         124778889998885

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.91  E-value=4.3e-24  Score=181.97  Aligned_cols=169  Identities=15%  Similarity=0.145  Sum_probs=136.1

Q ss_pred             ChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE
Q psy2960         187 ALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV  266 (405)
Q Consensus       187 s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v  266 (405)
                      ++++||+++|++.|+|+++.+.+++++||+|+|+|+ |++|++++++++..|+.+++++++.   ++|++.++++|++++
T Consensus         2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~---~~rl~~a~~~GAd~~   77 (175)
T d1cdoa2           2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLN---PDKFEKAKVFGATDF   77 (175)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSC---GGGHHHHHHTTCCEE
T ss_pred             CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEec-CCccchHHHHHHHHhhchheeecch---HHHHHHHHHcCCcEE
Confidence            478999999999999999988899999999999998 8999999999999999776666443   345899999999999


Q ss_pred             eChhh---HHH-HhhhcCCCCCcEEEECCCchhH-HHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEecch
Q psy2960         267 FTEEE---LRN-ISRDASIPKPKLALNCVGGNSA-TNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWMTR  341 (405)
Q Consensus       267 ~~~~d---~~~-i~~~t~g~g~Dvvld~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~~~  341 (405)
                      +|+.+   ... +.+.+.++|+|+++|++|+... ..++.+++++|.++.++.........+....+.++++++|+++++
T Consensus        78 in~~~~~~~~~~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~i~Gs~~G~  157 (175)
T d1cdoa2          78 VNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPIQLIAGRTWKGSMFGG  157 (175)
T ss_dssp             ECGGGCSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSSSCEEECHHHHHTTCEEEECSGGG
T ss_pred             EcCCCcchhHHHHHHhhccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEecCCcccCccHHHHHCCcEEEEEEEeC
Confidence            99754   223 6777778899999999998766 456788888766666565555444455556667899999998776


Q ss_pred             hhhhhccHHHHHHHHHHHHHHHHcCc
Q psy2960         342 WQKENKESAERKSMMNELTEMMRTGK  367 (405)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~~~g~  367 (405)
                      +.        .++++.++++++++|+
T Consensus       158 ~~--------~~~d~~~~i~l~~~gK  175 (175)
T d1cdoa2         158 FK--------GKDGVPKMVKAYLDKK  175 (175)
T ss_dssp             CC--------HHHHHHHHHHHHHTTS
T ss_pred             Cc--------HHHHHHHHHHHHHcCC
Confidence            42        2567888999999886

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.8e-24  Score=181.60  Aligned_cols=165  Identities=18%  Similarity=0.237  Sum_probs=133.8

Q ss_pred             CChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE
Q psy2960         186 IALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY  265 (405)
Q Consensus       186 ~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~  265 (405)
                      +|+++||.+. ++.+||+++.+ +++++||+|+|+|+ |++|++++|+|+++|++.++++   +..+++++.++++|+++
T Consensus         1 vS~e~Aal~e-pla~a~~a~~~-~~~~~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~---d~~~~rl~~a~~~Ga~~   74 (171)
T d1pl8a2           1 VTFEEGALIE-PLSVGIHACRR-GGVTLGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVT---DLSATRLSKAKEIGADL   74 (171)
T ss_dssp             SCHHHHHHHH-HHHHHHHHHHH-HTCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEE---ESCHHHHHHHHHTTCSE
T ss_pred             CCHHHHHHHH-HHHHHHHHHHH-hCCCCCCEEEEECC-CccHHHHHHHHHHcCCceEEec---cCCHHHHHHHHHhCCcc
Confidence            5899999875 77889999876 79999999999998 9999999999999999655555   33466789999999999


Q ss_pred             EeChh--hHHH---HhhhcCCCCCcEEEECCCchhH-HHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEEec
Q psy2960         266 VFTEE--ELRN---ISRDASIPKPKLALNCVGGNSA-TNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGHWM  339 (405)
Q Consensus       266 v~~~~--d~~~---i~~~t~g~g~Dvvld~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~~~  339 (405)
                      ++++.  +..+   ..+.+.+.++|+||||+|++.. ..++++++++|+++.+|... .+.+++...++.|++++.|++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~~~-~~~~~~~~~~~~k~l~i~Gs~~  153 (171)
T d1pl8a2          75 VLQISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGS-EMTTVPLLHAAIREVDIKGVFR  153 (171)
T ss_dssp             EEECSSCCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCC-SCCCCCHHHHHHTTCEEEECCS
T ss_pred             cccccccccccccccccccCCCCceEEEeccCCchhHHHHHHHhcCCCEEEEEecCC-CCCccCHHHHHHCCcEEEEEeC
Confidence            98754  3332   3334557899999999998765 56899999999999999543 4567888888999999999864


Q ss_pred             chhhhhhccHHHHHHHHHHHHHHHHcCccc
Q psy2960         340 TRWQKENKESAERKSMMNELTEMMRTGKLA  369 (405)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~  369 (405)
                      +.            +.++++++++++|+|+
T Consensus       154 ~~------------~~~~~al~li~~gkid  171 (171)
T d1pl8a2         154 YC------------NTWPVAISMLASKSVN  171 (171)
T ss_dssp             CS------------SCHHHHHHHHHTTSCC
T ss_pred             CH------------hHHHHHHHHHHcCCCC
Confidence            32            2367889999999874

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.91  E-value=1e-23  Score=179.82  Aligned_cols=169  Identities=14%  Similarity=0.123  Sum_probs=132.8

Q ss_pred             ChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE
Q psy2960         187 ALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV  266 (405)
Q Consensus       187 s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v  266 (405)
                      ++++||+++|++.|+|+++.+.++++|||+|||+|+ ||+|++++|+++.+|+..++++++.   +++++.++++|++++
T Consensus         2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~---~~k~~~a~~~Ga~~~   77 (176)
T d2jhfa2           2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDIN---KDKFAKAKEVGATEC   77 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSC---GGGHHHHHHTTCSEE
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCc---HHHHHHHHHhCCeeE
Confidence            478999999999999999998899999999999999 8999999999999998666666443   335789999999999


Q ss_pred             eChhh---HHH-HhhhcCCCCCcEEEECCCchhH-HHHHHhcccCCEEEEEeccCCC-CcccCcccccccCeEEEEEecc
Q psy2960         267 FTEEE---LRN-ISRDASIPKPKLALNCVGGNSA-TNLLRTLVSKGVMVTYGGMSRE-PVQIPTSAFIFKDITLRGHWMT  340 (405)
Q Consensus       267 ~~~~d---~~~-i~~~t~g~g~Dvvld~~g~~~~-~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~k~~~~~g~~~~  340 (405)
                      +++.+   ... ..+.+.+.|+|++|||+|.+.. ..++.+++++|+.+.++..... ........++.+++++.|++++
T Consensus        78 i~~~~~~~~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G  157 (176)
T d2jhfa2          78 VNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFG  157 (176)
T ss_dssp             ECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGG
T ss_pred             EecCCchhHHHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEecCCCCcccccccHHHHhCCCEEEEEEEe
Confidence            98754   223 6667778899999999998766 5678999887655556644333 3333334566799999999877


Q ss_pred             hhhhhhccHHHHHHHHHHHHHHHHcCc
Q psy2960         341 RWQKENKESAERKSMMNELTEMMRTGK  367 (405)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~g~  367 (405)
                      ++.        .++++.++++++++|+
T Consensus       158 ~~~--------~~~~~~~li~~~~~GK  176 (176)
T d2jhfa2         158 GFK--------SKDSVPKLVADFMAKK  176 (176)
T ss_dssp             GCC--------HHHHHHHHHHHHHTTS
T ss_pred             CCC--------HHHHHHHHHHHHHCcC
Confidence            532        1456888889998885

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.90  E-value=8e-24  Score=179.97  Aligned_cols=166  Identities=13%  Similarity=0.134  Sum_probs=128.9

Q ss_pred             ChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE
Q psy2960         187 ALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV  266 (405)
Q Consensus       187 s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v  266 (405)
                      ++++||.++|++.|+|+++.+.+++++|++|+|+|+ |++|++++|+|+++|+..+++++.   .+++++.++++|++++
T Consensus         3 P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~---~~~kl~~Ak~~GA~~~   78 (176)
T d1d1ta2           3 PPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDL---NKDKFEKAMAVGATEC   78 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECS---CGGGHHHHHHHTCSEE
T ss_pred             CHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECC-CchhHHHHHHHHHcCCceEEEecC---cHHHHHHHHhcCCcEE
Confidence            489999999999999999988899999999999998 999999999999999865555533   2446899999999999


Q ss_pred             eChhhH---HH-HhhhcCCCCCcEEEECCCchhH-HHHHHhcccC-CEEEEEeccCCCC-cccCcccccccCeEEEEEec
Q psy2960         267 FTEEEL---RN-ISRDASIPKPKLALNCVGGNSA-TNLLRTLVSK-GVMVTYGGMSREP-VQIPTSAFIFKDITLRGHWM  339 (405)
Q Consensus       267 ~~~~d~---~~-i~~~t~g~g~Dvvld~~g~~~~-~~~~~~l~~~-G~~v~~g~~~~~~-~~~~~~~~~~k~~~~~g~~~  339 (405)
                      +|+.+.   .+ +.+.|.+.|+|++||++|.... ..++.++.++ |+++.+|...... ..++... +.++.+++|+++
T Consensus        79 in~~~~~~~~~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~~~~~~~~~~-~~~~~~i~Gs~~  157 (176)
T d1d1ta2          79 ISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTYDPML-LFTGRTWKGCVF  157 (176)
T ss_dssp             ECGGGCSSCHHHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCTTCCEEECTHH-HHTTCEEEECSG
T ss_pred             ECccccchHHHHHHHHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEccccccccCCCHHH-HhCCCEEEEEEE
Confidence            997652   33 7777889999999999998765 4567666554 9999999654332 3333333 447889999987


Q ss_pred             chhhhhhccHHHHHHHHHHHHHHHHc
Q psy2960         340 TRWQKENKESAERKSMMNELTEMMRT  365 (405)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~~  365 (405)
                      ++..        ..+++.++++++.+
T Consensus       158 G~~~--------~~~dip~li~~~~~  175 (176)
T d1d1ta2         158 GGLK--------SRDDVPKLVTEFLA  175 (176)
T ss_dssp             GGCC--------HHHHHHHHHHHHTT
T ss_pred             eCCC--------cHHHHHHHHHHHhC
Confidence            7632        14556666666543

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.90  E-value=1.5e-23  Score=177.77  Aligned_cols=162  Identities=19%  Similarity=0.240  Sum_probs=129.7

Q ss_pred             CChhhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE
Q psy2960         186 IALTEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY  265 (405)
Q Consensus       186 ~s~~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~  265 (405)
                      +|+|+||.+. ++++||+++.. +++++|++|+|+|+ |++|++++|+|+++|++|+++.++    +++++.++++|++.
T Consensus         1 VS~e~Aal~e-Pla~a~~a~~~-~~~~~g~~vlV~G~-G~vG~~~~~~ak~~Ga~vi~v~~~----~~r~~~a~~~ga~~   73 (170)
T d1e3ja2           1 VSLEEGALLE-PLSVGVHACRR-AGVQLGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARS----PRRLEVAKNCGADV   73 (170)
T ss_dssp             SCHHHHHTHH-HHHHHHHHHHH-HTCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESC----HHHHHHHHHTTCSE
T ss_pred             CCHHHHHHHH-HHHHHHHHHHH-hCCCCCCEEEEEcc-cccchhhHhhHhhhcccccccchH----HHHHHHHHHcCCcE
Confidence            5899999875 67889999966 79999999999986 999999999999999998888543    55689999999988


Q ss_pred             EeChh----hHH---HHhhhcCCCCCcEEEECCCchh-HHHHHHhcccCCEEEEEeccCCCCcccCcccccccCeEEEEE
Q psy2960         266 VFTEE----ELR---NISRDASIPKPKLALNCVGGNS-ATNLLRTLVSKGVMVTYGGMSREPVQIPTSAFIFKDITLRGH  337 (405)
Q Consensus       266 v~~~~----d~~---~i~~~t~g~g~Dvvld~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~k~~~~~g~  337 (405)
                      +++.+    +..   +..+.+.+.++|+||||+|++. ...++++++++|+++.+|... .+.+++...++.|++++.|+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~-~~~~~~~~~~~~k~i~i~gs  152 (170)
T d1e3ja2          74 TLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGS-QMVTVPLVNACAREIDIKSV  152 (170)
T ss_dssp             EEECCTTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCS-SCCCCCHHHHHTTTCEEEEC
T ss_pred             EEeccccccccchhhhhhhcccccCCceeeecCCChHHHHHHHHHHhcCCceEEEecCC-CCCCcCHHHHHHCCCEEEEE
Confidence            76432    222   2223345789999999999976 467899999999999999543 44567888889999999998


Q ss_pred             ecchhhhhhccHHHHHHHHHHHHHHHHcCc
Q psy2960         338 WMTRWQKENKESAERKSMMNELTEMMRTGK  367 (405)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  367 (405)
                      +.+.            +.++++++++++|+
T Consensus       153 ~~~~------------~~~~~ai~li~~Gk  170 (170)
T d1e3ja2         153 FRYC------------NDYPIALEMVASGR  170 (170)
T ss_dssp             CSCS------------SCHHHHHHHHHTTS
T ss_pred             ECCH------------HHHHHHHHHHHcCC
Confidence            6432            12677889999886

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=7e-22  Score=170.49  Aligned_cols=163  Identities=16%  Similarity=0.107  Sum_probs=128.6

Q ss_pred             hhhccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeC
Q psy2960         189 TEISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT  268 (405)
Q Consensus       189 ~~Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~  268 (405)
                      ++.+++...+.|||+++.. +++++||+|||+|+ |++|++++|+|+.+|+.+++++++   .++|++.++++|++++++
T Consensus         2 ~d~~~l~d~~~ta~~a~~~-a~v~~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~---~~~rl~~a~~~Ga~~~~~   76 (195)
T d1kola2           2 RDLTCLSDILPTGYHGAVT-AGVGPGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDL---NPARLAHAKAQGFEIADL   76 (195)
T ss_dssp             HHHGGGGTHHHHHHHHHHH-TTCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEES---CHHHHHHHHHTTCEEEET
T ss_pred             chHHhcccHHHHHHHHHHH-hCCCCCCEEEEECc-CHHHHHHHHHHHhhcccceeeecc---cchhhHhhhhccccEEEe
Confidence            5778889999999999865 89999999999998 999999999999999977777643   356799999999999998


Q ss_pred             hh--hHHH-HhhhcCCCCCcEEEECCCch----------------hHHHHHHhcccCCEEEEEeccCCCC----------
Q psy2960         269 EE--ELRN-ISRDASIPKPKLALNCVGGN----------------SATNLLRTLVSKGVMVTYGGMSREP----------  319 (405)
Q Consensus       269 ~~--d~~~-i~~~t~g~g~Dvvld~~g~~----------------~~~~~~~~l~~~G~~v~~g~~~~~~----------  319 (405)
                      +.  ++.+ +.++|++.|+|++|||+|.+                .+..++++++++|+++.+|......          
T Consensus        77 ~~~~~~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~~~~~~~~~~~~~~  156 (195)
T d1kola2          77 SLDTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAAKI  156 (195)
T ss_dssp             TSSSCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSCCTTCSSHHHHT
T ss_pred             CCCcCHHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecCCCcccchhhhhhc
Confidence            64  4666 89999999999999999843                5678899999999999999543221          


Q ss_pred             --cccCcccccccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHHHcCc
Q psy2960         320 --VQIPTSAFIFKDITLRGHWMTRWQKENKESAERKSMMNELTEMMRTGK  367 (405)
Q Consensus       320 --~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  367 (405)
                        ..++...++.|++++.+-..           ..++.++++++++.+++
T Consensus       157 ~~~~~~~~~~~~k~~~i~~g~~-----------~v~~~~~~Ll~~I~~~k  195 (195)
T d1kola2         157 GSLSIRFGLGWAKSHSFHTGQT-----------PVMKYNRALMQAIMWDR  195 (195)
T ss_dssp             TCCCCCHHHHHHTTCEEEESSC-----------CHHHHHHHHHHHHHTTS
T ss_pred             CceeeeHHHHHhhcceeccCCC-----------chHHHHHHHHHHHHcCC
Confidence              12333445668888765221           12444677888888764

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.75  E-value=2.7e-17  Score=133.94  Aligned_cols=137  Identities=20%  Similarity=0.203  Sum_probs=107.7

Q ss_pred             ccceeEEEEccC--CCCc-cceEeeeecCCCCCCCeEEEEEEEeecChhhhhhhcccCCCCCCCCCCCccceEEEEEEEc
Q psy2960          70 SYLANKLVYNQH--GTPL-RVVTVENETLNSVQKHEVVVKMLVAPVNPADINTIQGVYPIKPTLPAVPGFEGVGEVVEVG  146 (405)
Q Consensus        70 ~~~~~a~~~~~~--g~~~-~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~~lG~E~~G~V~~vG  146 (405)
                      |.+.|+|++.+.  |.|+ +.+++++.++|+|++||||||++|.++++.......   +.  ..+-++..+++|+|++  
T Consensus         1 M~~~k~~vl~~~P~G~P~~~~f~l~e~~ip~~~~gevLvk~~~~svDp~~R~~~~---~~--~~g~~~~g~~vg~Vv~--   73 (147)
T d1v3va1           1 MVKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIASK---RL--KEGAVMMGQQVARVVE--   73 (147)
T ss_dssp             CCEEEEEEESSCCCSSCCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHGG---GS--CTTSBCCCCEEEEEEE--
T ss_pred             CcccEEEEEccCCCCCCcccceEEEEEECCCCCCCEEEEEEEEEeEccccccccc---cc--ccCCccccceEEEEEE--
Confidence            467899999986  6664 679999999999999999999999999986543322   21  2234566688999988  


Q ss_pred             CCCCCCCCCCEEEecCCCCCcccceEeecccceEEcCCCCC-----hhhhccCCCcHHHH-HHHHHhhcCCCCCCEEEE
Q psy2960         147 SDVSSLAVGDHVIPDTQHLGTWRNYGKFNHDVLMKVPKDIA-----LTEISGITSNPCTA-YRMLKDYNSLSPGDVVIQ  219 (405)
Q Consensus       147 ~~v~~~~~GdrV~~~~~~~G~~a~~~~v~~~~~~~iP~~~s-----~~~Aa~~~~~~~ta-~~al~~~~~~~~g~~VLI  219 (405)
                      +++++|++||+|++.    ++|+||.+++...+.++|+...     ....+++....+|| |..+..  ..+.|++||+
T Consensus        74 S~~~~f~~GD~V~g~----~gw~ey~v~~~~~l~kv~~~~~~~~~~~~~~~~lG~~Gmtaay~gl~~--~~k~Getvv~  146 (147)
T d1v3va1          74 SKNSAFPAGSIVLAQ----SGWTTHFISDGKGLEKLLTEWPDKKIQYHEHVTKGFENMPAAFIEMLN--GANLGKAVVT  146 (147)
T ss_dssp             ESCTTSCTTCEEEEC----CCSBSEEEECSSSCEECCTTCCTTSSCCCEEEEECGGGHHHHHHHHHT--TCCSSEEEEE
T ss_pred             eCCCcccCCCEEEEc----cCCEeEEEeccceeeEccccccccccchhhhHhccccchHHHHHHhhC--CCCCCCEEEe
Confidence            778899999999987    6899999999999999987643     33456677788875 546654  4567999987

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=1.8e-16  Score=113.08  Aligned_cols=74  Identities=20%  Similarity=0.317  Sum_probs=66.0

Q ss_pred             CChhhhccCCCcHHHHHHHHH---hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcC
Q psy2960         186 IALTEISGITSNPCTAYRMLK---DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG  262 (405)
Q Consensus       186 ~s~~~Aa~~~~~~~ta~~al~---~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg  262 (405)
                      +|++||++++++++|||.+++   +....++|++|||+|++|+||.+++|+|+.+|++|+++++++++    .++++++|
T Consensus         1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k----~~~~~~lG   76 (77)
T d1o8ca2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGREST----HEYLKSLG   76 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG----HHHHHHHT
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHH----HHHHHHCC
Confidence            589999999999999988765   44667899999999999999999999999999999999988766    67788887


Q ss_pred             C
Q psy2960         263 A  263 (405)
Q Consensus       263 ~  263 (405)
                      +
T Consensus        77 A   77 (77)
T d1o8ca2          77 A   77 (77)
T ss_dssp             E
T ss_pred             C
Confidence            5

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.92  E-value=3.4e-05  Score=64.25  Aligned_cols=81  Identities=6%  Similarity=-0.012  Sum_probs=58.1

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc-CC-cEEeChhhHHHHhhhcCCCCCcEEE
Q psy2960         211 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GA-DYVFTEEELRNISRDASIPKPKLAL  288 (405)
Q Consensus       211 ~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l-g~-~~v~~~~d~~~i~~~t~g~g~Dvvl  288 (405)
                      --+|++|+|.||+|++|.++++.+...|++|+.+.++.++.++..+.+.+. .. ....|..+..++.+..  .++|++|
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~iDili   97 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAV--KGAHFVF   97 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHT--TTCSEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHh--cCcCeee
Confidence            348999999999999999999999999999999988876655554544432 22 2334444433344442  4689999


Q ss_pred             ECCCc
Q psy2960         289 NCVGG  293 (405)
Q Consensus       289 d~~g~  293 (405)
                      ++.|.
T Consensus        98 n~Ag~  102 (191)
T d1luaa1          98 TAGAI  102 (191)
T ss_dssp             ECCCT
T ss_pred             ecCcc
Confidence            99874

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.86  E-value=6.2e-05  Score=65.85  Aligned_cols=81  Identities=16%  Similarity=0.210  Sum_probs=57.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Chh---hHHH-HhhhcC--CCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEE---ELRN-ISRDAS--IPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~---d~~~-i~~~t~--g~g  283 (405)
                      +|+++||.||++|+|.+.++.+...|++|+.+.++.++.++..+.+.+.+.....   |-.   +... +.+...  ++.
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g~   86 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGGK   86 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhCCC
Confidence            5899999999999999999999999999999887766655556666666654322   322   2222 222211  345


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|+++++.|.
T Consensus        87 idilvnnAG~   96 (259)
T d1xq1a_          87 LDILINNLGA   96 (259)
T ss_dssp             CSEEEEECCC
T ss_pred             cccccccccc
Confidence            8999999984

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.79  E-value=6.8e-05  Score=65.27  Aligned_cols=81  Identities=20%  Similarity=0.256  Sum_probs=58.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Ch---hhHHH-Hhhh-cCCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TE---EELRN-ISRD-ASIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~---~d~~~-i~~~-t~g~g~  284 (405)
                      .++.+||.||++|+|.+.++.+...|++|+.+.++.+..++..+.+++.|.+...   |-   ++... +.+. ...+++
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~i   88 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKNV   88 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcCCc
Confidence            5789999999999999999999899999999887766656666667777765433   32   22222 2221 113579


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        89 Dilvnnag~   97 (251)
T d2c07a1          89 DILVNNAGI   97 (251)
T ss_dssp             CEEEECCCC
T ss_pred             eeeeecccc
Confidence            999999874

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=4.8e-05  Score=65.92  Aligned_cols=100  Identities=16%  Similarity=0.328  Sum_probs=65.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE---EeCh---hhHHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY---VFTE---EELRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~---v~~~---~d~~~-i~~~t-~g~g~  284 (405)
                      +|+++||.||++|+|.+.++.+...|++|+.+.++++..+   +...+++...   ..|-   ++..+ +.+.. ..+++
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~---~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   79 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQ---AISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEV   79 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH---HHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH---HHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcccCCc
Confidence            5899999999999999999999999999998876654332   3334455432   2332   22222 22221 13579


Q ss_pred             cEEEECCCch--------------------------hHHHHHHhc--ccCCEEEEEecc
Q psy2960         285 KLALNCVGGN--------------------------SATNLLRTL--VSKGVMVTYGGM  315 (405)
Q Consensus       285 Dvvld~~g~~--------------------------~~~~~~~~l--~~~G~~v~~g~~  315 (405)
                      |+++++.|..                          ..+.++..|  +++|+++.+++.
T Consensus        80 DilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~  138 (243)
T d1q7ba_          80 DILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSV  138 (243)
T ss_dssp             SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCH
T ss_pred             ceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecch
Confidence            9999998732                          122344444  347999999864

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.76  E-value=0.00013  Score=63.46  Aligned_cols=101  Identities=17%  Similarity=0.274  Sum_probs=67.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHH-HHHHcCCcEEe---Ch---hhHHH----HhhhcCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKS-YLKSLGADYVF---TE---EELRN----ISRDASI  281 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~-~~~~lg~~~v~---~~---~d~~~----i~~~t~g  281 (405)
                      .|+++||.||++|+|.+.++.+...|++|+.+.++.++.++..+ ...+.|.+...   |-   ++...    +.+.  -
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~--~   81 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEK--F   81 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHH--c
Confidence            58999999999999999999999999999998876555433333 33455655332   32   22222    2222  2


Q ss_pred             CCCcEEEECCCch--------------------------hHHHHHHhc--ccCCEEEEEecc
Q psy2960         282 PKPKLALNCVGGN--------------------------SATNLLRTL--VSKGVMVTYGGM  315 (405)
Q Consensus       282 ~g~Dvvld~~g~~--------------------------~~~~~~~~l--~~~G~~v~~g~~  315 (405)
                      +++|+++++.|..                          ..+.++..|  +.+|+++.+++.
T Consensus        82 g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~  143 (251)
T d1vl8a_          82 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSL  143 (251)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCG
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccc
Confidence            4799999999842                          122345555  346899999864

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.75  E-value=4.9e-05  Score=66.49  Aligned_cols=80  Identities=15%  Similarity=0.198  Sum_probs=60.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Ch---hhHHH----HhhhcCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TE---EELRN----ISRDASIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~---~d~~~----i~~~t~g~  282 (405)
                      +|+++||.||++++|.+.++.+...|++|+.+.++.++.++..+.+++.+....+   |-   ++.++    +.+.. +.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~-~g   83 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVF-DG   83 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT-TS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHh-CC
Confidence            6899999999999999999999999999999998876666667777888776543   32   22222    23332 34


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      .+|+++++.|.
T Consensus        84 ~idilinnag~   94 (258)
T d1ae1a_          84 KLNILVNNAGV   94 (258)
T ss_dssp             CCCEEEECCCC
T ss_pred             CcEEEeccccc
Confidence            68999999884

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.74  E-value=8.6e-05  Score=64.90  Aligned_cols=101  Identities=17%  Similarity=0.203  Sum_probs=71.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcc-hHHHHHHHHHcCCcEEe---Ch---hhHHH----HhhhcCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYLKSLGADYVF---TE---EELRN----ISRDASI  281 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~-~~~~~~~~~~lg~~~v~---~~---~d~~~----i~~~t~g  281 (405)
                      .|++|||.||++|+|.+.++.+...|++|+.+.++.++ .++..+.+.+.|.+.+.   |-   ++...    +.+.  .
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~--~   82 (259)
T d1ja9a_           5 AGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSH--F   82 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHH--c
Confidence            69999999999999999999999999999987765543 34445666778876543   32   22222    2222  2


Q ss_pred             CCCcEEEECCCch--------------------------hHHHHHHhcccCCEEEEEecc
Q psy2960         282 PKPKLALNCVGGN--------------------------SATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       282 ~g~Dvvld~~g~~--------------------------~~~~~~~~l~~~G~~v~~g~~  315 (405)
                      +++|+++++.|..                          ....++..|+++|+++.+...
T Consensus        83 g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~  142 (259)
T d1ja9a_          83 GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSI  142 (259)
T ss_dssp             SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred             CCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccc
Confidence            4699999999842                          123456777888988888753

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=97.73  E-value=6.4e-05  Score=65.77  Aligned_cols=81  Identities=16%  Similarity=0.207  Sum_probs=59.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Ch---hhHHH-HhhhcC--CCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TE---EELRN-ISRDAS--IPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~---~d~~~-i~~~t~--g~g  283 (405)
                      .|+++||.||++|+|.+.++.+...|++|+.+.++.++.++..+.+++.|.....   |-   ++... +.+...  +..
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~~   86 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHGK   86 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCCC
Confidence            6999999999999999999999999999999887766666666666777764432   32   22232 222211  346


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|+++++.|.
T Consensus        87 idilvnnAG~   96 (259)
T d2ae2a_          87 LNILVNNAGI   96 (259)
T ss_dssp             CCEEEECCCC
T ss_pred             ceEEEECCce
Confidence            9999999983

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=4.3e-05  Score=66.77  Aligned_cols=79  Identities=22%  Similarity=0.305  Sum_probs=59.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---C---hhhHHH----HhhhcCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN----ISRDASIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~d~~~----i~~~t~g~  282 (405)
                      .|+++||.||++|+|.+.++.+...|++|+.+.++.++.++..+.+++.|.+...   |   .++...    +.+.  -+
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~--~g   87 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISK--LG   87 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHH--HS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHH--cC
Confidence            6999999999999999999999999999999988776666666777777765443   2   222222    2222  24


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      ++|+++++.|.
T Consensus        88 ~iDilvnnAG~   98 (255)
T d1fmca_          88 KVDILVNNAGG   98 (255)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEeeeCCcC
Confidence            69999999874

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.73  E-value=0.00015  Score=63.71  Aligned_cols=103  Identities=18%  Similarity=0.247  Sum_probs=71.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc-chHHHHHHHHHcCCcEEe---Ch---hhHHH-Hhhhc-CCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD-DIDKLKSYLKSLGADYVF---TE---EELRN-ISRDA-SIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~-~~~~~~~~~~~lg~~~v~---~~---~d~~~-i~~~t-~g~g  283 (405)
                      .|+++||.||++|+|.+.++.+...|++|+.+.++.+ ..++..+.+++.|.+...   |-   ++... +.+.. ..++
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   96 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGK   96 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhCC
Confidence            5899999999999999999999999999998876543 334445566677765544   22   22222 22211 1247


Q ss_pred             CcEEEECCCch--------------------------hHHHHHHhcccCCEEEEEecc
Q psy2960         284 PKLALNCVGGN--------------------------SATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       284 ~Dvvld~~g~~--------------------------~~~~~~~~l~~~G~~v~~g~~  315 (405)
                      +|+++++.|..                          .....+..|.++|+++.++..
T Consensus        97 idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~  154 (272)
T d1g0oa_          97 LDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSI  154 (272)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCG
T ss_pred             CCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccccc
Confidence            89999988742                          123346778889999998754

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.68  E-value=2.7e-05  Score=65.97  Aligned_cols=102  Identities=17%  Similarity=0.188  Sum_probs=74.1

Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe-ChhhHHH-HhhhcCCCCC
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRN-ISRDASIPKP  284 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~-~~~d~~~-i~~~t~g~g~  284 (405)
                      +..++++|++||..|+  |.|..++-+|+..|.+|+++-..++..+...+.+.++|.+++. ...|... ...   ...+
T Consensus        72 ~~L~l~~g~~VLeIGs--GsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~---~~pf  146 (215)
T d1jg1a_          72 EIANLKPGMNILEVGT--GSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPP---KAPY  146 (215)
T ss_dssp             HHHTCCTTCCEEEECC--TTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG---GCCE
T ss_pred             HhhccCccceEEEecC--CCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcc---cCcc
Confidence            4478999999999997  6799999999988988888866555455566677778876553 2233222 211   3578


Q ss_pred             cEEEECCCchhHH-HHHHhcccCCEEEEEe
Q psy2960         285 KLALNCVGGNSAT-NLLRTLVSKGVMVTYG  313 (405)
Q Consensus       285 Dvvld~~g~~~~~-~~~~~l~~~G~~v~~g  313 (405)
                      |.|+-+.+.+... ..++.|++||+++..-
T Consensus       147 D~Iiv~~a~~~ip~~l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         147 DVIIVTAGAPKIPEPLIEQLKIGGKLIIPV  176 (215)
T ss_dssp             EEEEECSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             eeEEeecccccCCHHHHHhcCCCCEEEEEE
Confidence            9999877766654 5679999999998754

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=5.9e-05  Score=66.61  Aligned_cols=99  Identities=18%  Similarity=0.289  Sum_probs=67.6

Q ss_pred             CCEE-EEeCCCcHHHHHHHH-HHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Chhh---HH---H-HhhhcCC
Q psy2960         214 GDVV-IQNGANSACGQNVIQ-IARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEEE---LR---N-ISRDASI  281 (405)
Q Consensus       214 g~~V-LI~ga~G~vG~~aiq-la~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~d---~~---~-i~~~t~g  281 (405)
                      |.+| ||+||++|+|+++++ +|+.-|++|+.+.++.++.++..+.+++.|.+..+   |-.+   ..   + +.+.  .
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~--~   79 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKE--Y   79 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHH--H
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHh--c
Confidence            6677 899999999998876 55666999999998877666666666666653222   3222   22   2 3333  2


Q ss_pred             CCCcEEEECCCch--------------------------hHHHHHHhcccCCEEEEEec
Q psy2960         282 PKPKLALNCVGGN--------------------------SATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       282 ~g~Dvvld~~g~~--------------------------~~~~~~~~l~~~G~~v~~g~  314 (405)
                      +++|+++++.|..                          .....+..|++.|+++.++.
T Consensus        80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS  138 (275)
T d1wmaa1          80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  138 (275)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence            4699999999831                          01223556688999999875

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=0.00013  Score=63.17  Aligned_cols=81  Identities=17%  Similarity=0.186  Sum_probs=59.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Chhh---HHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEEE---LRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~d---~~~-i~~~t-~g~g~  284 (405)
                      .|+++||.||++|+|.+.+......|++|+.+.++.++.++..+.+++.|.....   |-.|   ... +.+.. ..+.+
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g~i   85 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGDV   85 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCCC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence            6899999999999999999999999999999988877666666667777765332   3322   222 22221 13569


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        86 dilinnag~   94 (244)
T d1yb1a_          86 SILVNNAGV   94 (244)
T ss_dssp             SEEEECCCC
T ss_pred             ceeEeeccc
Confidence            999999984

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.62  E-value=0.00012  Score=59.68  Aligned_cols=103  Identities=13%  Similarity=0.098  Sum_probs=63.4

Q ss_pred             HHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCC
Q psy2960         202 YRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASI  281 (405)
Q Consensus       202 ~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g  281 (405)
                      ..+|.+..-..+|++|||.|+ ||.+.+++..+..+|++++++.|+.++.+...+.+.+.+....+...+.       ..
T Consensus         6 ~~~l~~~~~~~~~k~vlIlGa-GGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~-------~~   77 (170)
T d1nyta1           6 LSDLERLSFIRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDEL-------EG   77 (170)
T ss_dssp             HHHHHHHTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGG-------TT
T ss_pred             HHHHHHcCCCCCCCEEEEECC-cHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccc-------cc
Confidence            345655444467999999999 9999999999999999877776665544433344444443333322221       13


Q ss_pred             CCCcEEEECCCchhHHH----HHHhcccCCEEEEE
Q psy2960         282 PKPKLALNCVGGNSATN----LLRTLVSKGVMVTY  312 (405)
Q Consensus       282 ~g~Dvvld~~g~~~~~~----~~~~l~~~G~~v~~  312 (405)
                      ..+|+||||+.......    -...+.++..++.+
T Consensus        78 ~~~dliIN~Tp~G~~~~~~~~~~~~~~~~~~v~D~  112 (170)
T d1nyta1          78 HEFDLIINATSSGISGDIPAIPSSLIHPGIYCYDM  112 (170)
T ss_dssp             CCCSEEEECCSCGGGTCCCCCCGGGCCTTCEEEES
T ss_pred             cccceeecccccCcccCCCCCcHHHhccCcEEEEe
Confidence            46899999986432211    12345555555444

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=97.62  E-value=0.0002  Score=62.01  Aligned_cols=78  Identities=14%  Similarity=0.169  Sum_probs=54.8

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eCh---hhHHH-Hhhhc-CCCCCc
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTE---EELRN-ISRDA-SIPKPK  285 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~---~d~~~-i~~~t-~g~g~D  285 (405)
                      -.|+++||.|+++|+|.+.++.+...|++|+.+.++.+.    .+..++++...+ .|-   ++... +.+.. ..+++|
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~----~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD   78 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG----KEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVD   78 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH----HHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----HHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCC
Confidence            379999999999999999999999999999888766443    455666776544 232   22222 22211 125799


Q ss_pred             EEEECCCc
Q psy2960         286 LALNCVGG  293 (405)
Q Consensus       286 vvld~~g~  293 (405)
                      +++++.|.
T Consensus        79 iLVnnAG~   86 (248)
T d2d1ya1          79 VLVNNAAI   86 (248)
T ss_dssp             EEEECCCC
T ss_pred             eEEEeCcC
Confidence            99999873

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=97.58  E-value=0.00011  Score=64.26  Aligned_cols=78  Identities=22%  Similarity=0.288  Sum_probs=57.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---C---hhhHHH----HhhhcCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN----ISRDASIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~d~~~----i~~~t~g~  282 (405)
                      .|+++||.||++|+|.+.+..+...|++|+.+.++.+..++..+.+++.|.+...   |   .++...    +.+.  -+
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~--~g   81 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRD--FG   81 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHH--HS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH--hC
Confidence            6899999999999999999999999999999887766655666666777765432   3   222222    2222  24


Q ss_pred             CCcEEEECCC
Q psy2960         283 KPKLALNCVG  292 (405)
Q Consensus       283 g~Dvvld~~g  292 (405)
                      ++|+++++.|
T Consensus        82 ~iDilVnnaG   91 (260)
T d1zema1          82 KIDFLFNNAG   91 (260)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCeehhhhc
Confidence            6999999987

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.58  E-value=0.00015  Score=63.19  Aligned_cols=80  Identities=16%  Similarity=0.220  Sum_probs=58.2

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---C---hhhHHH-Hhhhc-CCCCCc
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDA-SIPKPK  285 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~d~~~-i~~~t-~g~g~D  285 (405)
                      |+.+||.||++|+|.+.++.+...|++|+.+.++.++.++..+.+++.|.+...   |   .++... +.+.. .-+++|
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD   81 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVD   81 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence            677899999999999999999999999999988776666666777777765433   3   222222 22211 135799


Q ss_pred             EEEECCCc
Q psy2960         286 LALNCVGG  293 (405)
Q Consensus       286 vvld~~g~  293 (405)
                      +++++.|.
T Consensus        82 ilVnnAG~   89 (257)
T d2rhca1          82 VLVNNAGR   89 (257)
T ss_dssp             EEEECCCC
T ss_pred             EEEecccc
Confidence            99999873

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.56  E-value=0.0002  Score=57.28  Aligned_cols=96  Identities=17%  Similarity=0.214  Sum_probs=66.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC---cEEeChh-hHHH-HhhhcCCCCCcEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA---DYVFTEE-ELRN-ISRDASIPKPKLA  287 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~---~~v~~~~-d~~~-i~~~t~g~g~Dvv  287 (405)
                      +..+|+|.|+ |-+|+.|++.|+.+|+.|.+.-.+    .++++.+++...   +.....+ ...+ +.      ..|+|
T Consensus        31 ~pa~V~ViGa-GvaG~~A~~~A~~lGA~V~~~D~~----~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~------~aDiv   99 (168)
T d1pjca1          31 KPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDIN----VERLSYLETLFGSRVELLYSNSAEIETAVA------EADLL   99 (168)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESC----HHHHHHHHHHHGGGSEEEECCHHHHHHHHH------TCSEE
T ss_pred             CCcEEEEECC-ChHHHHHHHHHhhCCCEEEEEeCc----HHHHHHHHHhhcccceeehhhhhhHHHhhc------cCcEE
Confidence            3578999999 999999999999999999988533    444555544432   2222222 2333 43      46999


Q ss_pred             EECCC---c--hh--HHHHHHhcccCCEEEEEeccCCCC
Q psy2960         288 LNCVG---G--NS--ATNLLRTLVSKGVMVTYGGMSREP  319 (405)
Q Consensus       288 ld~~g---~--~~--~~~~~~~l~~~G~~v~~g~~~~~~  319 (405)
                      |.++=   .  +.  ..+.++.|+||..++.+....+..
T Consensus       100 I~aalipG~~aP~lIt~~mv~~Mk~GSVIVDvaidqGG~  138 (168)
T d1pjca1         100 IGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQGGC  138 (168)
T ss_dssp             EECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTCTTCCS
T ss_pred             EEeeecCCcccCeeecHHHHhhcCCCcEEEEeecCCCCc
Confidence            99873   2  22  256789999999999998654443

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.55  E-value=0.00025  Score=57.62  Aligned_cols=100  Identities=15%  Similarity=0.258  Sum_probs=69.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeCh----h--------------h---
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE----E--------------E---  271 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~----~--------------d---  271 (405)
                      +..+|+|.|+ |-+|+.|++.|+.+||.|.+.-.+    ..+++.+++++...+.-.    .              +   
T Consensus        28 ~pa~VvViGa-GvaG~~Aa~~A~~lGA~V~v~D~~----~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~  102 (183)
T d1l7da1          28 PPARVLVFGV-GVAGLQAIATAKRLGAVVMATDVR----AATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRK  102 (183)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSC----STTHHHHHHTTCEECCC-----------------------C
T ss_pred             CCcEEEEEcC-cHHHHHHHHHHHHcCCEEEEEecc----HHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHH
Confidence            3468999999 999999999999999999888544    344778888887655210    0              0   


Q ss_pred             -HHH-HhhhcCCCCCcEEEECCC---c--h--hHHHHHHhcccCCEEEEEeccCCCC
Q psy2960         272 -LRN-ISRDASIPKPKLALNCVG---G--N--SATNLLRTLVSKGVMVTYGGMSREP  319 (405)
Q Consensus       272 -~~~-i~~~t~g~g~Dvvld~~g---~--~--~~~~~~~~l~~~G~~v~~g~~~~~~  319 (405)
                       ..+ +.+.  -...|+||-++=   .  +  ...+.++.|+||..++.+....+..
T Consensus       103 ~~~~~l~~~--l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvaidqGGn  157 (183)
T d1l7da1         103 KQAEAVLKE--LVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGN  157 (183)
T ss_dssp             CHHHHHHHH--HTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCS
T ss_pred             HHHHHHHHH--HHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEeecCCCc
Confidence             111 2222  135799998772   2  1  2256789999999999998654443

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=97.55  E-value=0.00025  Score=61.57  Aligned_cols=99  Identities=18%  Similarity=0.253  Sum_probs=67.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---C---hhhHHH----HhhhcCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN----ISRDASIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~d~~~----i~~~t~g~  282 (405)
                      +|+++||.||++|+|.+.++.+...|++|+.+.++.+.   ..+...+++...++   |   .++...    +.+.  .+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~---~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~--~g   79 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAA---GQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRR--LG   79 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHH---HHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHH--HC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH---HHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHH--hC
Confidence            68999999999999999999999999999888765433   23445567765443   2   222222    2222  25


Q ss_pred             CCcEEEECCCch--------------------------hHHHHHHhcc-cCCEEEEEeccC
Q psy2960         283 KPKLALNCVGGN--------------------------SATNLLRTLV-SKGVMVTYGGMS  316 (405)
Q Consensus       283 g~Dvvld~~g~~--------------------------~~~~~~~~l~-~~G~~v~~g~~~  316 (405)
                      ++|+++++.|..                          ....++..|+ .+|+|+.+++..
T Consensus        80 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~  140 (253)
T d1hxha_          80 TLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVS  140 (253)
T ss_dssp             SCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGG
T ss_pred             CCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchh
Confidence            789999999832                          0223444454 579999998653

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.54  E-value=1.6e-05  Score=68.71  Aligned_cols=94  Identities=18%  Similarity=0.187  Sum_probs=62.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeC-----hhh---HHH-HhhhcCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT-----EEE---LRN-ISRDASIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~-----~~d---~~~-i~~~t~g~g  283 (405)
                      +|++|||.||++|+|.+.++.....|++|+.+....++.         ........     .++   ... +.+..+..+
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEE---------ASASVIVKMTDSFTEQADQVTAEVGKLLGDQK   71 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTT---------SSEEEECCCCSCHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccc---------ccccceeecccCcHHHHHHHHHHHHHHhCCCC
Confidence            489999999999999999999999999998875443220         01111111     111   122 444444567


Q ss_pred             CcEEEECCCch---------------------------hHHHHHHhcccCCEEEEEecc
Q psy2960         284 PKLALNCVGGN---------------------------SATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       284 ~Dvvld~~g~~---------------------------~~~~~~~~l~~~G~~v~~g~~  315 (405)
                      +|+++++.|.-                           .....+..++++|+++.++..
T Consensus        72 iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~  130 (236)
T d1dhra_          72 VDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAK  130 (236)
T ss_dssp             EEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred             ceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccH
Confidence            99999998731                           012245667889999999864

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.51  E-value=0.00037  Score=62.15  Aligned_cols=81  Identities=17%  Similarity=0.177  Sum_probs=54.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC---------cchHHHHHHHHHcCCcEEeCh---hhHHH-Hhhh-
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR---------DDIDKLKSYLKSLGADYVFTE---EELRN-ISRD-  278 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~---------~~~~~~~~~~~~lg~~~v~~~---~d~~~-i~~~-  278 (405)
                      .|+++||.||++|+|.+.++.+...|++|+.+..+.         +..++..+.....+.....+.   ++.++ +.+. 
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~~   85 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTAL   85 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHH
Confidence            589999999999999999999999999998874322         222333444445555545443   22222 2221 


Q ss_pred             cCCCCCcEEEECCCc
Q psy2960         279 ASIPKPKLALNCVGG  293 (405)
Q Consensus       279 t~g~g~Dvvld~~g~  293 (405)
                      ...+++|+++++.|.
T Consensus        86 ~~~G~iDiLVnNAGi  100 (302)
T d1gz6a_          86 DTFGRIDVVVNNAGI  100 (302)
T ss_dssp             HHTSCCCEEEECCCC
T ss_pred             HHcCCCCEEEECCcc
Confidence            114579999999883

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.00019  Score=62.51  Aligned_cols=79  Identities=23%  Similarity=0.331  Sum_probs=56.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc-EEe----C---hhhHHH----HhhhcC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YVF----T---EEELRN----ISRDAS  280 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~-~v~----~---~~d~~~----i~~~t~  280 (405)
                      +|+++||.||++|+|.+.+..+...|++|+.+.++.++.++..+.+++.+.. .+.    |   .++...    +.+.  
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~--   86 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ--   86 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH--
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh--
Confidence            5899999999999999999999999999999987766555555666666532 222    3   222222    3332  


Q ss_pred             CCCCcEEEECCCc
Q psy2960         281 IPKPKLALNCVGG  293 (405)
Q Consensus       281 g~g~Dvvld~~g~  293 (405)
                      -+++|+++++.|.
T Consensus        87 ~g~iD~lVnnAg~   99 (257)
T d1xg5a_          87 HSGVDICINNAGL   99 (257)
T ss_dssp             HCCCSEEEECCCC
T ss_pred             cCCCCEEEecccc
Confidence            2569999999974

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=97.48  E-value=0.00028  Score=61.30  Aligned_cols=79  Identities=15%  Similarity=0.083  Sum_probs=54.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe----Ch----hhHHH----HhhhcC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF----TE----EELRN----ISRDAS  280 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~----~~----~d~~~----i~~~t~  280 (405)
                      .|++|||.||++|+|.+.+......|++|+++.++.++.+...+.....+...+.    |.    .+..+    +.+.  
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--   81 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQ--   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHH--
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHH--
Confidence            5899999999999999999999999999999998877644433333334433332    21    11222    2232  


Q ss_pred             CCCCcEEEECCCc
Q psy2960         281 IPKPKLALNCVGG  293 (405)
Q Consensus       281 g~g~Dvvld~~g~  293 (405)
                      .+++|+++++.|.
T Consensus        82 ~g~iDilvnnAG~   94 (254)
T d1sbya1          82 LKTVDILINGAGI   94 (254)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEeCCCC
Confidence            2479999999984

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=97.48  E-value=0.00033  Score=60.95  Aligned_cols=84  Identities=17%  Similarity=0.259  Sum_probs=57.0

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEe-cCC---cchHHHHHHHHHcCCcEEe---Chhh---HHH-Hhhh
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIV-RNR---DDIDKLKSYLKSLGADYVF---TEEE---LRN-ISRD  278 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~-~~~---~~~~~~~~~~~~lg~~~v~---~~~d---~~~-i~~~  278 (405)
                      ..+|+.+|||.||+||+|++.+..+...|+++++++ ++.   +..++..+.+++.|....+   |-.|   ... +...
T Consensus         5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i   84 (259)
T d2fr1a1           5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGI   84 (259)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTS
T ss_pred             ccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhccc
Confidence            578999999999999999999999989999755554 332   2334445556677764333   3222   333 3333


Q ss_pred             cCCCCCcEEEECCCc
Q psy2960         279 ASIPKPKLALNCVGG  293 (405)
Q Consensus       279 t~g~g~Dvvld~~g~  293 (405)
                      ....++|.++++.|.
T Consensus        85 ~~~~~i~~vv~~ag~   99 (259)
T d2fr1a1          85 GDDVPLSAVFHAAAT   99 (259)
T ss_dssp             CTTSCEEEEEECCCC
T ss_pred             ccccccccccccccc
Confidence            334568999999873

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=97.48  E-value=0.00029  Score=60.82  Aligned_cols=100  Identities=12%  Similarity=0.216  Sum_probs=65.6

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC-cchHHHHHHHHHcCCcEEe---Ch---hhHHH-Hhhhc-CCCCCcE
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNR-DDIDKLKSYLKSLGADYVF---TE---EELRN-ISRDA-SIPKPKL  286 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~-~~~~~~~~~~~~lg~~~v~---~~---~d~~~-i~~~t-~g~g~Dv  286 (405)
                      .|||.||++|+|.+.++.+...|++|+.+.++. +..++..+.+++.|.+...   |-   ++... +.+.. ..+++|+
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   82 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTIDV   82 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCCSE
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCc
Confidence            589999999999999999999999998876443 3344445666667764332   32   22322 22211 1357999


Q ss_pred             EEECCCch--------------------------hHHHHHHhc--ccCCEEEEEecc
Q psy2960         287 ALNCVGGN--------------------------SATNLLRTL--VSKGVMVTYGGM  315 (405)
Q Consensus       287 vld~~g~~--------------------------~~~~~~~~l--~~~G~~v~~g~~  315 (405)
                      ++++.|..                          ....++..|  +++|+||.+++.
T Consensus        83 LVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~  139 (244)
T d1edoa_          83 VVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASV  139 (244)
T ss_dssp             EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCT
T ss_pred             cccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcCh
Confidence            99999732                          122344444  457999999864

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=97.47  E-value=0.00021  Score=62.39  Aligned_cols=79  Identities=16%  Similarity=0.275  Sum_probs=57.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc-chHHHHHHHHHcCCcEEe---Ch---hhHHH----HhhhcCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD-DIDKLKSYLKSLGADYVF---TE---EELRN----ISRDASI  281 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~-~~~~~~~~~~~lg~~~v~---~~---~d~~~----i~~~t~g  281 (405)
                      .|+++||.||++|+|.+.++.+...|++|+.+.++.+ ..++..+.+++.|.+...   |-   ++..+    +.+.  .
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~--~   83 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKE--F   83 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH--h
Confidence            6899999999999999999999999999999987754 334456666777765433   32   22222    2222  2


Q ss_pred             CCCcEEEECCCc
Q psy2960         282 PKPKLALNCVGG  293 (405)
Q Consensus       282 ~g~Dvvld~~g~  293 (405)
                      +++|+++++.|.
T Consensus        84 G~iDiLVnnAG~   95 (261)
T d1geea_          84 GKLDVMINNAGL   95 (261)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEeecccee
Confidence            479999999874

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=97.41  E-value=0.00025  Score=61.91  Aligned_cols=81  Identities=15%  Similarity=0.125  Sum_probs=56.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHH-HHHcCCcEEe---Ch---hhHHH-Hhhhc-CCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSY-LKSLGADYVF---TE---EELRN-ISRDA-SIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~-~~~lg~~~v~---~~---~d~~~-i~~~t-~g~g  283 (405)
                      .|+++||.||++|+|.+.++.+...|++|+.+.++.++..+..+. .++.|.+...   |-   ++... +.+.. ..++
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   87 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGP   87 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            589999999999999999999999999999998887665444433 3455654332   32   22322 22211 1357


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|+++++.|.
T Consensus        88 iDilVnnAg~   97 (260)
T d1h5qa_          88 ISGLIANAGV   97 (260)
T ss_dssp             EEEEEECCCC
T ss_pred             CcEecccccc
Confidence            9999999873

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=97.41  E-value=0.00016  Score=63.38  Aligned_cols=78  Identities=19%  Similarity=0.216  Sum_probs=52.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe--Ch---hhHHH----HhhhcCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TE---EELRN----ISRDASIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~--~~---~d~~~----i~~~t~g~g  283 (405)
                      .|+++||.||++|+|.+.++.+...|++|+.+.++.++.++..+.+...+.-..+  |-   ++...    +.+.  .+.
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~--~g~   82 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAK--HGK   82 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHH--HSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHH--cCC
Confidence            6899999999999999999999999999998876654433333333222322222  32   22222    2222  247


Q ss_pred             CcEEEECCC
Q psy2960         284 PKLALNCVG  292 (405)
Q Consensus       284 ~Dvvld~~g  292 (405)
                      +|+++++.|
T Consensus        83 iD~lVnnAG   91 (268)
T d2bgka1          83 LDIMFGNVG   91 (268)
T ss_dssp             CCEEEECCC
T ss_pred             cceeccccc
Confidence            999999987

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.40  E-value=0.00012  Score=61.94  Aligned_cols=102  Identities=17%  Similarity=0.228  Sum_probs=67.5

Q ss_pred             HhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC--cEEEEecCCcchHHHHHHHHHcCCcEEe-ChhhHHH-HhhhcCC
Q psy2960         206 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRN-ISRDASI  281 (405)
Q Consensus       206 ~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~--~v~~~~~~~~~~~~~~~~~~~lg~~~v~-~~~d~~~-i~~~t~g  281 (405)
                      .+..++++|++||-.|+  |.|..++.+|+..|.  +|+++-.+++..+...+.++..+.+.+. -..|..+ ...   .
T Consensus        68 l~~l~l~~g~~VLdiG~--GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~---~  142 (213)
T d1dl5a1          68 MEWVGLDKGMRVLEIGG--GTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPE---F  142 (213)
T ss_dssp             HHHTTCCTTCEEEEECC--TTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGG---G
T ss_pred             HHhhhccccceEEEecC--ccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccc---c
Confidence            35579999999999998  458899999998874  5666654444334444455555654332 1222222 111   3


Q ss_pred             CCCcEEEECCCchhH-HHHHHhcccCCEEEEE
Q psy2960         282 PKPKLALNCVGGNSA-TNLLRTLVSKGVMVTY  312 (405)
Q Consensus       282 ~g~Dvvld~~g~~~~-~~~~~~l~~~G~~v~~  312 (405)
                      ..||+|+.+.+-+.. ...++.|+|||+++..
T Consensus       143 ~~fD~I~~~~~~~~~p~~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         143 SPYDVIFVTVGVDEVPETWFTQLKEGGRVIVP  174 (213)
T ss_dssp             CCEEEEEECSBBSCCCHHHHHHEEEEEEEEEE
T ss_pred             cchhhhhhhccHHHhHHHHHHhcCCCcEEEEE
Confidence            469999987765554 4567999999999874

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.37  E-value=0.0002  Score=61.83  Aligned_cols=78  Identities=18%  Similarity=0.193  Sum_probs=53.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE--eChhhHHHHhhhc-CCCCCcEEEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV--FTEEELRNISRDA-SIPKPKLALN  289 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v--~~~~d~~~i~~~t-~g~g~Dvvld  289 (405)
                      .|+++||.|+++|+|.+.++.+...|++|+.+.+++++   ..+..++++.-..  .|-.+.+.+.+.. .-+++|++++
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~---l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDilVn   80 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSD---LVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVN   80 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH---HHHHHHhcCCCeEEEEeCCCHHHHHHHHHHcCCCeEEEE
Confidence            58999999999999999999999999999998866443   2344455544322  2333322222111 1357999999


Q ss_pred             CCCc
Q psy2960         290 CVGG  293 (405)
Q Consensus       290 ~~g~  293 (405)
                      +.|.
T Consensus        81 nAg~   84 (242)
T d1cyda_          81 NAAL   84 (242)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            9873

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.35  E-value=0.00042  Score=60.17  Aligned_cols=78  Identities=14%  Similarity=0.142  Sum_probs=55.2

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Chh---hHHH-Hhhhc-CCCCCcEE
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEE---ELRN-ISRDA-SIPKPKLA  287 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~---d~~~-i~~~t-~g~g~Dvv  287 (405)
                      .+||.||++|+|.+.+..+...|++|+.+.++.++.++..+.+++.|.+...   |-.   +... +.+.. .-+++|++
T Consensus         3 ValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDil   82 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDVI   82 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCEE
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccEE
Confidence            4699999999999999999999999999988766666666667777765432   322   2222 22211 13579999


Q ss_pred             EECCCc
Q psy2960         288 LNCVGG  293 (405)
Q Consensus       288 ld~~g~  293 (405)
                      +++.|.
T Consensus        83 VnnAG~   88 (255)
T d1gega_          83 VNNAGV   88 (255)
T ss_dssp             EECCCC
T ss_pred             Eecccc
Confidence            999873

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=97.33  E-value=0.00026  Score=62.82  Aligned_cols=81  Identities=16%  Similarity=0.277  Sum_probs=55.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHH-HHcCCcEEe---Chh---hHHH-Hhhh-cCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVF---TEE---ELRN-ISRD-ASIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~-~~lg~~~v~---~~~---d~~~-i~~~-t~g~g  283 (405)
                      .|+++||.||++|+|.+.+..+...|++|+.+.++.++.++..+.+ .+.|.....   |-.   +... +... ....+
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g~  103 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAGH  103 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhccc
Confidence            5899999999999999999999999999999987765544444333 344554332   322   2222 1111 12467


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|+++++.|.
T Consensus       104 iDilvnnAg~  113 (294)
T d1w6ua_         104 PNIVINNAAG  113 (294)
T ss_dssp             CSEEEECCCC
T ss_pred             cchhhhhhhh
Confidence            9999999983

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.33  E-value=0.00035  Score=61.36  Aligned_cols=80  Identities=20%  Similarity=0.268  Sum_probs=55.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc--EE----eCh---hhHHH-Hhhhc-CC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YV----FTE---EELRN-ISRDA-SI  281 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~--~v----~~~---~d~~~-i~~~t-~g  281 (405)
                      .|+++||.||++|+|.+.++.+...|++|+.+.++.++.++..+.+.+.|..  .+    .|-   ++... +.+.. ..
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   82 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF   82 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            5899999999999999999999999999999987766555555556666532  11    232   22222 22211 12


Q ss_pred             CCCcEEEECCC
Q psy2960         282 PKPKLALNCVG  292 (405)
Q Consensus       282 ~g~Dvvld~~g  292 (405)
                      +.+|+++++.|
T Consensus        83 G~iDilVnnAG   93 (274)
T d1xhla_          83 GKIDILVNNAG   93 (274)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCceEEEeecc
Confidence            47999999987

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.32  E-value=0.00042  Score=60.78  Aligned_cols=81  Identities=15%  Similarity=0.220  Sum_probs=56.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc--EE----eCh---hhHHH-Hhhhc-CC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YV----FTE---EELRN-ISRDA-SI  281 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~--~v----~~~---~d~~~-i~~~t-~g  281 (405)
                      .|+++||.||++|+|.+.++.+...|++|+.+.++.++.++..+.+.+.+..  .+    .|-   ++... +.+.. ..
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~   83 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   83 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            5899999999999999999999999999999988766655555666665531  11    232   22222 22211 12


Q ss_pred             CCCcEEEECCCc
Q psy2960         282 PKPKLALNCVGG  293 (405)
Q Consensus       282 ~g~Dvvld~~g~  293 (405)
                      +++|+++++.|.
T Consensus        84 g~iDilvnnAG~   95 (272)
T d1xkqa_          84 GKIDVLVNNAGA   95 (272)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCceEEEeCCcc
Confidence            479999999873

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00071  Score=58.27  Aligned_cols=75  Identities=17%  Similarity=0.255  Sum_probs=53.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE--eChhh---HHH-HhhhcCCCCCcE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV--FTEEE---LRN-ISRDASIPKPKL  286 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v--~~~~d---~~~-i~~~t~g~g~Dv  286 (405)
                      .|+++||.||++|+|.+.++.+...|++|+.+.++.++   ..+..++++....  .|-.|   .++ +.+   -+++|+
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~---l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~---~g~iDi   79 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQAD---LDSLVRECPGIEPVCVDLGDWEATERALGS---VGPVDL   79 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHSTTCEEEECCTTCHHHHHHHHTT---CCCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHH---HHHHHHhcCCCeEEEEeCCCHHHHHHHHHH---hCCceE
Confidence            79999999999999999999999999999988766443   2344455554332  34333   333 332   257999


Q ss_pred             EEECCCc
Q psy2960         287 ALNCVGG  293 (405)
Q Consensus       287 vld~~g~  293 (405)
                      ++++.|.
T Consensus        80 lVnnAg~   86 (244)
T d1pr9a_          80 LVNNAAV   86 (244)
T ss_dssp             EEECCCC
T ss_pred             EEecccc
Confidence            9999874

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=97.31  E-value=0.00023  Score=61.73  Aligned_cols=79  Identities=16%  Similarity=0.129  Sum_probs=51.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe--Ch---hhHHH----HhhhcCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TE---EELRN----ISRDASIPK  283 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~--~~---~d~~~----i~~~t~g~g  283 (405)
                      .|+++||.||++|+|.+.++.+...|++|+.+.++.+..++..+.+..-+.-..+  |-   ++...    +.+.  .++
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~--~G~   82 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKA--FGP   82 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHH--HSS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHH--hCC
Confidence            5899999999999999999999999999998887654433333322211111222  32   22222    2222  247


Q ss_pred             CcEEEECCCc
Q psy2960         284 PKLALNCVGG  293 (405)
Q Consensus       284 ~Dvvld~~g~  293 (405)
                      +|+++++.|.
T Consensus        83 iDiLVnnAg~   92 (251)
T d1zk4a1          83 VSTLVNNAGI   92 (251)
T ss_dssp             CCEEEECCCC
T ss_pred             ceEEEecccc
Confidence            9999999974

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.31  E-value=0.00047  Score=59.76  Aligned_cols=76  Identities=9%  Similarity=0.027  Sum_probs=53.5

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH----HhhhcCCCCCcEEEEC
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN----ISRDASIPKPKLALNC  290 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~----i~~~t~g~g~Dvvld~  290 (405)
                      .|+||.|+++|+|.+.+.-+...|++|+.+.++.+..++..........-.+.+.++..+    +.+.  -+++|+++++
T Consensus         1 ~TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~~~~~--~G~iDiLVnN   78 (252)
T d1zmta1           1 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSA--YGQVDVLVSN   78 (252)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHCTTSEECCCCSHHHHHHHHHHH--HSCCCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhhhCcEEEeccCCHHHHHHHHHHHHHH--cCCCCEEEEC
Confidence            378999999999999999999999999888776665544444444454444555555333    3333  2469999987


Q ss_pred             CC
Q psy2960         291 VG  292 (405)
Q Consensus       291 ~g  292 (405)
                      .|
T Consensus        79 Ag   80 (252)
T d1zmta1          79 DI   80 (252)
T ss_dssp             CC
T ss_pred             Cc
Confidence            76

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=97.31  E-value=0.0012  Score=56.70  Aligned_cols=98  Identities=16%  Similarity=0.227  Sum_probs=68.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Ch---hhHHH----HhhhcCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TE---EELRN----ISRDASIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~---~d~~~----i~~~t~g~  282 (405)
                      .|+++||.||++++|.+.++-+...|++|+.+.++.++   ..+...+++.+..+   |-   ++..+    +.+.  .+
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~--~g   78 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERL---LAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEE--FG   78 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHH--HS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH---HHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHH--hC
Confidence            68999999999999999999999999999998866533   34566678865443   32   22322    2222  24


Q ss_pred             CCcEEEECCCchh--------------------------HHHHHHhcccCCEEEEEecc
Q psy2960         283 KPKLALNCVGGNS--------------------------ATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       283 g~Dvvld~~g~~~--------------------------~~~~~~~l~~~G~~v~~g~~  315 (405)
                      ++|+++++.|...                          ....+..+.+++.++.++..
T Consensus        79 ~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~  137 (241)
T d2a4ka1          79 RLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSV  137 (241)
T ss_dssp             CCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCC
T ss_pred             CccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeecccc
Confidence            6899999886321                          12335667778887766643

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.28  E-value=0.00072  Score=58.06  Aligned_cols=76  Identities=16%  Similarity=0.152  Sum_probs=51.6

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCc-------EEEEecCCcchHHHHHHHHHcCCcEEe---Chh---hHHH----Hhhh
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLK-------TINIVRNRDDIDKLKSYLKSLGADYVF---TEE---ELRN----ISRD  278 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~-------v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~---d~~~----i~~~  278 (405)
                      .|||.||++|+|.+.+..+...|++       ++.+.++.++.++..+.+++.|.....   |-.   +...    +.+.
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVER   82 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            4799999999999999999999998       666666555545555556666654332   322   2222    2222


Q ss_pred             cCCCCCcEEEECCCc
Q psy2960         279 ASIPKPKLALNCVGG  293 (405)
Q Consensus       279 t~g~g~Dvvld~~g~  293 (405)
                        .+++|+++++.|.
T Consensus        83 --~g~iDilvnnAg~   95 (240)
T d2bd0a1          83 --YGHIDCLVNNAGV   95 (240)
T ss_dssp             --TSCCSEEEECCCC
T ss_pred             --cCCcceeeccccc
Confidence              3579999999983

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.27  E-value=0.00044  Score=60.36  Aligned_cols=81  Identities=16%  Similarity=0.221  Sum_probs=55.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc--EE----eCh---hhHHH-Hhhhc-CC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YV----FTE---EELRN-ISRDA-SI  281 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~--~v----~~~---~d~~~-i~~~t-~g  281 (405)
                      .|+++||.||++|+|.+.++.+...|++|+.+.++.++.++..+.+.+.|..  .+    .|-   ++..+ +.+.. ..
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF   83 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            6899999999999999999999999999999887766555555555565532  11    232   22222 22211 12


Q ss_pred             CCCcEEEECCCc
Q psy2960         282 PKPKLALNCVGG  293 (405)
Q Consensus       282 ~g~Dvvld~~g~  293 (405)
                      +++|+++++.|.
T Consensus        84 g~iDilvnnAG~   95 (264)
T d1spxa_          84 GKLDILVNNAGA   95 (264)
T ss_dssp             SCCCEEEECCC-
T ss_pred             CCCCEeeccccc
Confidence            579999999873

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=97.27  E-value=0.00067  Score=58.51  Aligned_cols=79  Identities=10%  Similarity=0.095  Sum_probs=55.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Ch---hhHHH-HhhhcC-CCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TE---EELRN-ISRDAS-IPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~---~d~~~-i~~~t~-g~g~  284 (405)
                      .|+++||.|+++|+|.+.++.+...|++|+.+.++++  ++..+..++.|.....   |-   ++... +.+... .+++
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~--~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~i   81 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA--PEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRC   81 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch--HHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence            5899999999999999999999999999988876543  3334556777765433   32   22222 222111 2579


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        82 DilVnnAG~   90 (247)
T d2ew8a1          82 DILVNNAGI   90 (247)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999984

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.27  E-value=0.00019  Score=61.96  Aligned_cols=78  Identities=13%  Similarity=0.147  Sum_probs=53.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Ch---hhHHH-HhhhcC-CCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TE---EELRN-ISRDAS-IPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~---~d~~~-i~~~t~-g~g~  284 (405)
                      .|+++||.||++|+|.+.++.+...|++|+.+.+++++   ..+...+++.....   |-   ++..+ +.+... .+++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~---~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   81 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEE---GKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGL   81 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH---HHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            68999999999999999999999999999988766543   23444556543332   32   22222 222211 2469


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        82 dilinnAG~   90 (244)
T d1nffa_          82 HVLVNNAGI   90 (244)
T ss_dssp             CEEEECCCC
T ss_pred             eEEEECCcc
Confidence            999999984

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.27  E-value=0.00048  Score=59.29  Aligned_cols=76  Identities=13%  Similarity=0.190  Sum_probs=54.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe-Ch---hhHHH----HhhhcCCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TE---EELRN----ISRDASIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~-~~---~d~~~----i~~~t~g~g~  284 (405)
                      .|+++||.||++|+|.+.++.+...|++|+.+.++.++   ..+...++++..+. |-   ++..+    +.+.  -+++
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~---l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~--~g~i   78 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGP---LREAAEAVGAHPVVMDVADPASVERGFAEALAH--LGRL   78 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHH--HSSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH---HHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHh--cCCc
Confidence            58999999999999999999999999999988765433   23445566765442 32   23322    2222  2469


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        79 DilVnnAG~   87 (242)
T d1ulsa_          79 DGVVHYAGI   87 (242)
T ss_dssp             CEEEECCCC
T ss_pred             eEEEECCcc
Confidence            999999873

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.25  E-value=0.0017  Score=51.82  Aligned_cols=73  Identities=14%  Similarity=0.275  Sum_probs=53.3

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH-HhhhcCCCCCcEEEEC
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNC  290 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~Dvvld~  290 (405)
                      -.+.+|||.|+ |.+|.++++.+...|++.+.+++...  +...+++.++|. .+.+.+++.+ +.      .+|+||.|
T Consensus        22 l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~--~ka~~l~~~~~~-~~~~~~~~~~~l~------~~Divi~a   91 (159)
T d1gpja2          22 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTY--ERAVELARDLGG-EAVRFDELVDHLA------RSDVVVSA   91 (159)
T ss_dssp             CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSH--HHHHHHHHHHTC-EECCGGGHHHHHH------TCSEEEEC
T ss_pred             cccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcH--HHHHHHHHhhhc-ccccchhHHHHhc------cCCEEEEe
Confidence            37899999999 99999999999999997655553321  223456677775 4556666555 43      47999999


Q ss_pred             CCch
Q psy2960         291 VGGN  294 (405)
Q Consensus       291 ~g~~  294 (405)
                      ++.+
T Consensus        92 tss~   95 (159)
T d1gpja2          92 TAAP   95 (159)
T ss_dssp             CSSS
T ss_pred             cCCC
Confidence            9864

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=97.24  E-value=0.00045  Score=59.92  Aligned_cols=78  Identities=17%  Similarity=0.184  Sum_probs=54.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---C---hhhHHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---T---EEELRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~---~~d~~~-i~~~t-~g~g~  284 (405)
                      +|+++||.||++|+|.+.++.+...|++|+.+.++.+   +..+..+++|.....   |   .++..+ +.+.. .-+++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~---~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   80 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDE---EGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSV   80 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH---HHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHH---HHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHcCCc
Confidence            6899999999999999999999999999988876543   334555677654332   3   223322 22211 12479


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        81 DilVnnAg~   89 (254)
T d1hdca_          81 DGLVNNAGI   89 (254)
T ss_dssp             CEEEECCCC
T ss_pred             cEEEecCcc
Confidence            999999873

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.23  E-value=0.00081  Score=59.40  Aligned_cols=105  Identities=10%  Similarity=0.114  Sum_probs=72.3

Q ss_pred             HHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe--ChhhHHHHhhhc
Q psy2960         202 YRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEEELRNISRDA  279 (405)
Q Consensus       202 ~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~--~~~d~~~i~~~t  279 (405)
                      +.-+.+.+++++|++||=.|+  |.|-.+..+|+..|+++++++-|++..+...+.+++.|....+  ...|..     .
T Consensus        50 ~~~~~~~l~l~~G~~VLDiGC--G~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~-----~  122 (291)
T d1kpia_          50 RKLALDKLNLEPGMTLLDIGC--GWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWE-----E  122 (291)
T ss_dssp             HHHHHHTTCCCTTCEEEEETC--TTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGG-----G
T ss_pred             HHHHHHhcCCCCCCEEEEecC--cchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccc-----c
Confidence            444557789999999999998  5677889999999999999987776656556667777754222  112211     1


Q ss_pred             CCCCCcEEEEC-----CCc-----------hhHHHHHHhcccCCEEEEEe
Q psy2960         280 SIPKPKLALNC-----VGG-----------NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       280 ~g~g~Dvvld~-----~g~-----------~~~~~~~~~l~~~G~~v~~g  313 (405)
                      ....||.|+..     ++.           ..+...-++|+|||+++.-.
T Consensus       123 ~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~  172 (291)
T d1kpia_         123 FDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHT  172 (291)
T ss_dssp             CCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred             cccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEE
Confidence            13468988752     232           12345679999999998643

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=97.22  E-value=0.00044  Score=60.18  Aligned_cols=78  Identities=14%  Similarity=0.137  Sum_probs=53.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcC--CcEE---eCh---hhHHH----HhhhcC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG--ADYV---FTE---EELRN----ISRDAS  280 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg--~~~v---~~~---~d~~~----i~~~t~  280 (405)
                      .|+++||.||++|+|.+.++.+...|++|+.+.++.++.++..+...+.+  ...+   .|-   ++...    +.+.  
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~--   80 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTER--   80 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHH--
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHH--
Confidence            58999999999999999999999999999988877655444444443332  2222   132   22222    2222  


Q ss_pred             CCCCcEEEECCC
Q psy2960         281 IPKPKLALNCVG  292 (405)
Q Consensus       281 g~g~Dvvld~~g  292 (405)
                      -+++|+++++.|
T Consensus        81 ~G~iDiLVnnAG   92 (258)
T d1iy8a_          81 FGRIDGFFNNAG   92 (258)
T ss_dssp             HSCCSEEEECCC
T ss_pred             hCCCCEEEECCc
Confidence            246999999987

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00038  Score=60.39  Aligned_cols=104  Identities=16%  Similarity=0.204  Sum_probs=65.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc--CCcEE---eCh---hhHHH-Hhhhc-CCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL--GADYV---FTE---EELRN-ISRDA-SIP  282 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l--g~~~v---~~~---~d~~~-i~~~t-~g~  282 (405)
                      .|+++||.||++|+|.+.++.+...|++|+.+.++.++.++..+.+.+.  +....   .|-   ++... +.+.. .-+
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            4899999999999999999999999999999887755443333333322  22222   232   22222 22211 124


Q ss_pred             CCcEEEECCCchh------------------HHHHHHhccc-----CCEEEEEeccC
Q psy2960         283 KPKLALNCVGGNS------------------ATNLLRTLVS-----KGVMVTYGGMS  316 (405)
Q Consensus       283 g~Dvvld~~g~~~------------------~~~~~~~l~~-----~G~~v~~g~~~  316 (405)
                      ++|+++++.|...                  ...++..|.+     +|+|+.+++..
T Consensus        82 ~iDilVnnAg~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~  138 (254)
T d2gdza1          82 RLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLA  138 (254)
T ss_dssp             CCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGG
T ss_pred             CcCeecccccccccccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHh
Confidence            7999999998421                  1223444432     58899998643

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.20  E-value=0.00069  Score=58.45  Aligned_cols=78  Identities=14%  Similarity=0.198  Sum_probs=51.9

Q ss_pred             CEEEEeCCCcHHHHHHHHHHH---HcCCcEEEEecCCcchHHHHHHHHHcCCcEEe--Ch---hhHHH----HhhhcCCC
Q psy2960         215 DVVIQNGANSACGQNVIQIAR---HWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TE---EELRN----ISRDASIP  282 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~---~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~--~~---~d~~~----i~~~t~g~  282 (405)
                      ++|||.||++|+|.+.++.+.   ..|++|+.+.++.++.++..+..+..+--.++  |-   ++...    +.......
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~   82 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTKDQ   82 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHGGG
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhhcC
Confidence            589999999999999886554   35899999998887755544444443322222  32   22322    33333456


Q ss_pred             CCcEEEECCC
Q psy2960         283 KPKLALNCVG  292 (405)
Q Consensus       283 g~Dvvld~~g  292 (405)
                      ++|+++++.|
T Consensus        83 ~iDiLvnNAg   92 (248)
T d1snya_          83 GLNVLFNNAG   92 (248)
T ss_dssp             CCSEEEECCC
T ss_pred             CcceEEeecc
Confidence            7999999987

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.20  E-value=5.7e-05  Score=65.05  Aligned_cols=93  Identities=17%  Similarity=0.224  Sum_probs=61.4

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeC----h-hh---HHH-HhhhcCCCCC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT----E-EE---LRN-ISRDASIPKP  284 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~----~-~d---~~~-i~~~t~g~g~  284 (405)
                      +.+|||.||++|+|.+.++.+...|++|+.+.++.++.         ........    . ++   ..+ +........+
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i   72 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQ---------ADSNILVDGNKNWTEQEQSILEQTASSLQGSQV   72 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTT---------SSEEEECCTTSCHHHHHHHHHHHHHHHHTTCCE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhc---------ccccceeccccCchhHHHHHHHHHHHHhcCCCe
Confidence            45799999999999999999999999999887654321         01111111    1 11   111 3333446679


Q ss_pred             cEEEECCCch---------------------------hHHHHHHhcccCCEEEEEecc
Q psy2960         285 KLALNCVGGN---------------------------SATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       285 Dvvld~~g~~---------------------------~~~~~~~~l~~~G~~v~~g~~  315 (405)
                      |+++++.|..                           .....+..|+++|+++.++..
T Consensus        73 D~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~  130 (235)
T d1ooea_          73 DGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAA  130 (235)
T ss_dssp             EEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred             eEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccH
Confidence            9999998731                           012345667889999999864

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.18  E-value=0.00069  Score=58.71  Aligned_cols=79  Identities=13%  Similarity=0.171  Sum_probs=53.8

Q ss_pred             CCCEEEEeCCCc--HHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe--Ch---hhHHH----HhhhcCC
Q psy2960         213 PGDVVIQNGANS--ACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TE---EELRN----ISRDASI  281 (405)
Q Consensus       213 ~g~~VLI~ga~G--~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~--~~---~d~~~----i~~~t~g  281 (405)
                      .|+++||.||+|  |+|.+.++.+...|++|+.+.++++..++..+.....+....+  |-   ++.+.    +.+.  .
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~--~   84 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEA--F   84 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHH--H
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHh--c
Confidence            689999999987  8999999999999999987776654434444445555544443  22   22222    2222  2


Q ss_pred             CCCcEEEECCCc
Q psy2960         282 PKPKLALNCVGG  293 (405)
Q Consensus       282 ~g~Dvvld~~g~  293 (405)
                      +++|+++++.|.
T Consensus        85 g~iDilVnnag~   96 (256)
T d1ulua_          85 GGLDYLVHAIAF   96 (256)
T ss_dssp             SSEEEEEECCCC
T ss_pred             CCceEEEecccc
Confidence            469999999873

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.18  E-value=0.00049  Score=59.78  Aligned_cols=78  Identities=9%  Similarity=0.078  Sum_probs=54.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Ch---hhHHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TE---EELRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~---~d~~~-i~~~t-~g~g~  284 (405)
                      +|+++||.||++|+|.+.++.+...|++|+.+.++.++   ..+...++|.....   |-   ++... +.+.. ..+++
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~---l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~i   80 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGARVAIADINLEA---ARATAAEIGPAACAIALDVTDQASIDRCVAELLDRWGSI   80 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHH---HHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH---HHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHHhCCc
Confidence            58999999999999999999999999999888765433   34555677765433   32   22222 22211 12479


Q ss_pred             cEEEECCCc
Q psy2960         285 KLALNCVGG  293 (405)
Q Consensus       285 Dvvld~~g~  293 (405)
                      |+++++.|.
T Consensus        81 DilVnnAg~   89 (256)
T d1k2wa_          81 DILVNNAAL   89 (256)
T ss_dssp             CEEEECCCC
T ss_pred             cEEEeeccc
Confidence            999999983

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00068  Score=60.21  Aligned_cols=83  Identities=20%  Similarity=0.302  Sum_probs=54.8

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH-----cCCcEEe---Ch---hhHHH-Hhhh
Q psy2960         211 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS-----LGADYVF---TE---EELRN-ISRD  278 (405)
Q Consensus       211 ~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~-----lg~~~v~---~~---~d~~~-i~~~  278 (405)
                      .-.|+++||.||++|+|.+.++.+...|++|+++.++.++.+...+.+.+     .+...+.   |-   ++... +.+.
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   88 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   88 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence            34799999999999999999999999999999998776554444443332     1333222   32   22222 2221


Q ss_pred             c-CCCCCcEEEECCCc
Q psy2960         279 A-SIPKPKLALNCVGG  293 (405)
Q Consensus       279 t-~g~g~Dvvld~~g~  293 (405)
                      . ..+++|+++++.|.
T Consensus        89 ~~~~G~iDiLVnnAg~  104 (297)
T d1yxma1          89 LDTFGKINFLVNNGGG  104 (297)
T ss_dssp             HHHHSCCCEEEECCCC
T ss_pred             HHHhCCeEEEEeeccc
Confidence            1 12469999999874

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00063  Score=59.50  Aligned_cols=80  Identities=18%  Similarity=0.197  Sum_probs=53.5

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc-CCcEEe---Chhh---HHH----HhhhcC
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADYVF---TEEE---LRN----ISRDAS  280 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l-g~~~v~---~~~d---~~~----i~~~t~  280 (405)
                      -+|+++||.||++|+|.+.+..+...|++|+.+.++.++.++..+..... +.....   +.++   ...    +.+.  
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--   89 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKL--   89 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHH--
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHH--
Confidence            36899999999999999999999999999999998766544444433333 332222   2211   111    2222  


Q ss_pred             CCCCcEEEECCCc
Q psy2960         281 IPKPKLALNCVGG  293 (405)
Q Consensus       281 g~g~Dvvld~~g~  293 (405)
                      .+..|+++++.|.
T Consensus        90 ~g~~~~li~nag~  102 (269)
T d1xu9a_          90 MGGLDMLILNHIT  102 (269)
T ss_dssp             HTSCSEEEECCCC
T ss_pred             hCCcccccccccc
Confidence            3468999988763

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=97.15  E-value=0.00038  Score=60.63  Aligned_cols=79  Identities=19%  Similarity=0.281  Sum_probs=52.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcc-hHHHHHHH-HHcCCcEEe---Ch---hhHHH----HhhhcC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD-IDKLKSYL-KSLGADYVF---TE---EELRN----ISRDAS  280 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~-~~~~~~~~-~~lg~~~v~---~~---~d~~~----i~~~t~  280 (405)
                      +|+++||.||++|+|.+.++.+...|++|+.+.++++. .++..+.+ ...|.....   |-   ++...    +.+.  
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~--   80 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQ--   80 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHH--
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHH--
Confidence            68999999999999999999999999999888866432 22222222 334544332   32   22222    2222  


Q ss_pred             CCCCcEEEECCCc
Q psy2960         281 IPKPKLALNCVGG  293 (405)
Q Consensus       281 g~g~Dvvld~~g~  293 (405)
                      .+++|+++++.|.
T Consensus        81 ~G~iDiLVnnAG~   93 (260)
T d1x1ta1          81 MGRIDILVNNAGI   93 (260)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             hCCCcEEEeeccc
Confidence            2469999999983

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.10  E-value=0.001  Score=56.80  Aligned_cols=72  Identities=21%  Similarity=0.260  Sum_probs=52.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe-Chhh-HHHHhhhcCCCCCcEEEEC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEE-LRNISRDASIPKPKLALNC  290 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~-~~~d-~~~i~~~t~g~g~Dvvld~  290 (405)
                      +|+++||.|+++|+|.+.++.+...|++|+.+.+++       +.+++.+...+. |-++ .+.+.+..  +.+|+++++
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~-------~~l~~~~~~~~~~Dv~~~~~~~~~~~--g~iD~lVnn   73 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNE-------ELLKRSGHRYVVCDLRKDLDLLFEKV--KEVDILVLN   73 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH-------HHHHHTCSEEEECCTTTCHHHHHHHS--CCCSEEEEC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH-------HHHHhcCCcEEEcchHHHHHHHHHHh--CCCcEEEec
Confidence            589999999999999999999999999998887553       334566655443 3333 33333332  469999999


Q ss_pred             CCc
Q psy2960         291 VGG  293 (405)
Q Consensus       291 ~g~  293 (405)
                      .|.
T Consensus        74 AG~   76 (234)
T d1o5ia_          74 AGG   76 (234)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            873

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00074  Score=58.36  Aligned_cols=77  Identities=13%  Similarity=0.279  Sum_probs=51.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe--Ch---hhHHH-Hhhhc-CCCCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TE---EELRN-ISRDA-SIPKPK  285 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~--~~---~d~~~-i~~~t-~g~g~D  285 (405)
                      .|+++||.||++|+|.+.++.+...|++|+.+.++++.   ..+...+++....+  |-   ++... +.+.. .-+++|
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~---~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD   81 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESG---GRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLD   81 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH---HHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcCCCC
Confidence            68999999999999999999999999999988755432   22333455442222  32   22222 22211 124699


Q ss_pred             EEEECCC
Q psy2960         286 LALNCVG  292 (405)
Q Consensus       286 vvld~~g  292 (405)
                      +++++.|
T Consensus        82 ilVnnAG   88 (250)
T d1ydea1          82 CVVNNAG   88 (250)
T ss_dssp             EEEECCC
T ss_pred             EEEeccc
Confidence            9999987

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=97.06  E-value=0.00064  Score=59.71  Aligned_cols=77  Identities=18%  Similarity=0.226  Sum_probs=52.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe---Ch---hhHHH-Hhhhc-CCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF---TE---EELRN-ISRDA-SIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~---~d~~~-i~~~t-~g~g~  284 (405)
                      .|+++||.||++|+|.+.++.+...|++|+.+.++.++   ..+..+++|.+...   |-   ++... +.+.. .-+.+
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~---l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i   80 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAER---LAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARFGKI   80 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH---HHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH---HHHHHHHcCCCeeEEecccccHHHHHHHHHHHHHHhCCc
Confidence            58999999999999999999999999999998766433   23444556654332   32   22222 22111 12579


Q ss_pred             cEEEECCC
Q psy2960         285 KLALNCVG  292 (405)
Q Consensus       285 Dvvld~~g  292 (405)
                      |+++++.|
T Consensus        81 dilvnnAG   88 (276)
T d1bdba_          81 DTLIPNAG   88 (276)
T ss_dssp             CEEECCCC
T ss_pred             cccccccc
Confidence            99999987

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.05  E-value=0.0014  Score=57.60  Aligned_cols=104  Identities=11%  Similarity=0.152  Sum_probs=70.5

Q ss_pred             HHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc-EE-eChhhHHHHhhhc
Q psy2960         202 YRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YV-FTEEELRNISRDA  279 (405)
Q Consensus       202 ~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~-~v-~~~~d~~~i~~~t  279 (405)
                      ...+.+.++++||++||=.|+  |.|..++.+|+..||+|++++-|.+..+...+...+.|.. .+ +...|+   ... 
T Consensus        51 ~~~~~~~l~l~~G~~VLDiGC--G~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~---~~~-  124 (285)
T d1kpga_          51 IDLALGKLGLQPGMTLLDVGC--GWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGW---EQF-  124 (285)
T ss_dssp             HHHHHTTTTCCTTCEEEEETC--TTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCG---GGC-
T ss_pred             HHHHHHHcCCCCCCEEEEecC--cchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhh---hcc-
Confidence            445567789999999999998  6789999999999999999998776655545555555532 11 111222   111 


Q ss_pred             CCCCCcEEEE-----CCCch----hHHHHHHhcccCCEEEEE
Q psy2960         280 SIPKPKLALN-----CVGGN----SATNLLRTLVSKGVMVTY  312 (405)
Q Consensus       280 ~g~g~Dvvld-----~~g~~----~~~~~~~~l~~~G~~v~~  312 (405)
                       ...+|.|+.     .+|..    .+....+.|+|+|+++.-
T Consensus       125 -~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~  165 (285)
T d1kpga_         125 -DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLH  165 (285)
T ss_dssp             -CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEE
T ss_pred             -cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEE
Confidence             246887764     33332    233466899999999863

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.05  E-value=0.00088  Score=56.71  Aligned_cols=98  Identities=17%  Similarity=0.116  Sum_probs=62.0

Q ss_pred             HhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc----CCcEEeChhhHHH-HhhhcC
Q psy2960         206 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL----GADYVFTEEELRN-ISRDAS  280 (405)
Q Consensus       206 ~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l----g~~~v~~~~d~~~-i~~~t~  280 (405)
                      .+...+++|++||-.|+  |.|..++.+|+. +.+|+++-.++    ...+.+++.    ..-.++ ..|... ..+   
T Consensus        63 l~~L~l~~g~~VLdIG~--GsGy~ta~La~l-~~~V~aiE~~~----~~~~~A~~~~~~~~nv~~~-~~d~~~g~~~---  131 (224)
T d1vbfa_          63 LDELDLHKGQKVLEIGT--GIGYYTALIAEI-VDKVVSVEINE----KMYNYASKLLSYYNNIKLI-LGDGTLGYEE---  131 (224)
T ss_dssp             HHHTTCCTTCEEEEECC--TTSHHHHHHHHH-SSEEEEEESCH----HHHHHHHHHHTTCSSEEEE-ESCGGGCCGG---
T ss_pred             HHHhhhcccceEEEecC--CCCHHHHHHHHH-hcccccccccH----HHHHHHHHHHhcccccccc-cCchhhcchh---
Confidence            35579999999999998  467888878875 66787775333    334444332    111122 122211 111   


Q ss_pred             CCCCcEEEECCCchhHH-HHHHhcccCCEEEEEec
Q psy2960         281 IPKPKLALNCVGGNSAT-NLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       281 g~g~Dvvld~~g~~~~~-~~~~~l~~~G~~v~~g~  314 (405)
                      ...||+|+-+.+.+... ..++.|++||+++...+
T Consensus       132 ~~pfD~Iiv~~a~~~ip~~l~~qLk~GGrLV~pvg  166 (224)
T d1vbfa_         132 EKPYDRVVVWATAPTLLCKPYEQLKEGGIMILPIG  166 (224)
T ss_dssp             GCCEEEEEESSBBSSCCHHHHHTEEEEEEEEEEEC
T ss_pred             hhhHHHHHhhcchhhhhHHHHHhcCCCCEEEEEEc
Confidence            34689998776655554 45799999999988643

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.03  E-value=0.0014  Score=57.46  Aligned_cols=105  Identities=11%  Similarity=0.159  Sum_probs=70.5

Q ss_pred             HHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe--ChhhHHHHhhh
Q psy2960         201 AYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEEELRNISRD  278 (405)
Q Consensus       201 a~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~--~~~d~~~i~~~  278 (405)
                      -+..+.+..+++||++||=.|+  |.|..+..+++..|++|+++.-+.+..+...+.+++.|....+  ...|.   ...
T Consensus        40 k~~~~~~~l~l~~g~~VLDiGC--G~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~---~~~  114 (280)
T d2fk8a1          40 KVDLNLDKLDLKPGMTLLDIGC--GWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGW---EDF  114 (280)
T ss_dssp             HHHHHHTTSCCCTTCEEEEESC--TTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCG---GGC
T ss_pred             HHHHHHHHcCCCCCCEEEEecC--CchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhh---hhh
Confidence            3445667789999999999999  4456778899999999999987776655556666666653211  11121   111


Q ss_pred             cCCCCCcEEEE-----CCCch----hHHHHHHhcccCCEEEEE
Q psy2960         279 ASIPKPKLALN-----CVGGN----SATNLLRTLVSKGVMVTY  312 (405)
Q Consensus       279 t~g~g~Dvvld-----~~g~~----~~~~~~~~l~~~G~~v~~  312 (405)
                        ...+|.|+.     .++..    .+....+.|+|+|+++.-
T Consensus       115 --~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~  155 (280)
T d2fk8a1         115 --AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQ  155 (280)
T ss_dssp             --CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEE
T ss_pred             --ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEE
Confidence              346888864     33433    234457899999999874

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.94  E-value=0.0019  Score=52.17  Aligned_cols=102  Identities=14%  Similarity=0.114  Sum_probs=60.3

Q ss_pred             HHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCC
Q psy2960         204 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPK  283 (405)
Q Consensus       204 al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g  283 (405)
                      +|.+..-..+|++|+|.|+ ||.+.+++..+...+.+++++.|+.++.+...+.+...+.-.....++       ..-..
T Consensus         8 ~l~~~~~~~~~k~vlIlGa-GGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~-------~~~~~   79 (171)
T d1p77a1           8 DLQRLNWLRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDS-------IPLQT   79 (171)
T ss_dssp             HHHHTTCCCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGG-------CCCSC
T ss_pred             HHHHcCCCCCCCEEEEECC-cHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhcc-------ccccc
Confidence            4544333458899999999 899999998887767677777776554444444443333322222111       11346


Q ss_pred             CcEEEECCCchhHHH----HHHhcccCCEEEEEe
Q psy2960         284 PKLALNCVGGNSATN----LLRTLVSKGVMVTYG  313 (405)
Q Consensus       284 ~Dvvld~~g~~~~~~----~~~~l~~~G~~v~~g  313 (405)
                      +|++|+|++......    ..+.++++..++.+.
T Consensus        80 ~diiIN~tp~g~~~~~~~~~~~~~~~~~~~~D~v  113 (171)
T d1p77a1          80 YDLVINATSAGLSGGTASVDAEILKLGSAFYDMQ  113 (171)
T ss_dssp             CSEEEECCCC-------CCCHHHHHHCSCEEESC
T ss_pred             cceeeecccccccccccchhhhhhcccceeeeee
Confidence            899999987533221    134456666666654

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.94  E-value=0.00091  Score=57.70  Aligned_cols=76  Identities=22%  Similarity=0.200  Sum_probs=49.1

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCC--cEEEEecCCcchHHHHHHHHHcC-Cc-EEe--Chhh---H---HH-HhhhcC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLG-AD-YVF--TEEE---L---RN-ISRDAS  280 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~--~v~~~~~~~~~~~~~~~~~~~lg-~~-~v~--~~~d---~---~~-i~~~t~  280 (405)
                      .++|||.||++|+|.+.++.+...|+  .|+.+.++.++    ++.+++.. .. +++  |-.+   .   .+ +.+..+
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~----~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~   78 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEK----ATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVG   78 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGG----CHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHG
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHH----HHHHHHhhCCceEEEEEecCCHHHHHHHHHHHHHHhC
Confidence            47999999999999999988888897  46666665544    33344433 22 122  3222   2   22 444434


Q ss_pred             CCCCcEEEECCCc
Q psy2960         281 IPKPKLALNCVGG  293 (405)
Q Consensus       281 g~g~Dvvld~~g~  293 (405)
                      ..++|+++++.|.
T Consensus        79 ~~~idilinnAG~   91 (250)
T d1yo6a1          79 SDGLSLLINNAGV   91 (250)
T ss_dssp             GGCCCEEEECCCC
T ss_pred             CCCeEEEEEcCcc
Confidence            4569999999983

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00054  Score=57.22  Aligned_cols=95  Identities=15%  Similarity=0.197  Sum_probs=62.9

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe-ChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~-~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      .++|+|.||+|.+|...+..+...|.+|.+++++.++.    ......+.+.+. |..|.+.+.+..  .++|+||.++|
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~----~~~~~~~~~~~~gD~~d~~~l~~al--~~~d~vi~~~g   76 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRL----PSEGPRPAHVVVGDVLQAADVDKTV--AGQDAVIVLLG   76 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGS----CSSSCCCSEEEESCTTSHHHHHHHH--TTCSEEEECCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhc----ccccccccccccccccchhhHHHHh--cCCCEEEEEec
Confidence            47899999999999999999999999999999876542    111223444332 444544443332  36799999997


Q ss_pred             ch-----------hHHHHHHhcccCC--EEEEEec
Q psy2960         293 GN-----------SATNLLRTLVSKG--VMVTYGG  314 (405)
Q Consensus       293 ~~-----------~~~~~~~~l~~~G--~~v~~g~  314 (405)
                      ..           .....++.++..|  +++.++.
T Consensus        77 ~~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss  111 (205)
T d1hdoa_          77 TRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTS  111 (205)
T ss_dssp             CTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             cCCchhhhhhhHHHHHHHHHHHHhcCCCeEEEEee
Confidence            42           1123445555443  8888764

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=96.90  E-value=0.0025  Score=55.33  Aligned_cols=102  Identities=19%  Similarity=0.169  Sum_probs=68.3

Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcC--CcEEEEecCCcchHHHHHHHHHcCC-cEE-eChhhHHHHhhhcCCC
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLGA-DYV-FTEEELRNISRDASIP  282 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G--~~v~~~~~~~~~~~~~~~~~~~lg~-~~v-~~~~d~~~i~~~t~g~  282 (405)
                      ..++++||++||=.|+  |.|..++.+|+..|  ++++++-.+++..+...+.++..|. +.+ +...|.   .......
T Consensus        97 ~~l~i~pG~~VLDiG~--GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~---~~~~~~~  171 (266)
T d1o54a_          97 MMLDVKEGDRIIDTGV--GSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI---SEGFDEK  171 (266)
T ss_dssp             HHTTCCTTCEEEEECC--TTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCG---GGCCSCC
T ss_pred             HhhCCCCCCEEEECCC--CCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccc---ccccccc
Confidence            4589999999999998  45888999999986  5677775554443444455566664 222 222232   2222345


Q ss_pred             CCcEEEECCCc--hhHHHHHHhcccCCEEEEEe
Q psy2960         283 KPKLALNCVGG--NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       283 g~Dvvld~~g~--~~~~~~~~~l~~~G~~v~~g  313 (405)
                      .+|.|+--+..  ..+..+.++|+|||+++.+.
T Consensus       172 ~~D~V~~d~p~p~~~l~~~~~~LKpGG~lv~~~  204 (266)
T d1o54a_         172 DVDALFLDVPDPWNYIDKCWEALKGGGRFATVC  204 (266)
T ss_dssp             SEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             ceeeeEecCCCHHHHHHHHHhhcCCCCEEEEEe
Confidence            67887766665  34567889999999998764

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.80  E-value=0.00025  Score=60.92  Aligned_cols=71  Identities=14%  Similarity=0.091  Sum_probs=49.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeC---hhhHHH----HhhhcCCCCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT---EEELRN----ISRDASIPKPK  285 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~---~~d~~~----i~~~t~g~g~D  285 (405)
                      .|+++||.||++|+|.+.++.+...|++|+.+.++.+..+    .+.    ....|   .++..+    +.+.  .+++|
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~----~~~----~~~~Dv~~~~~v~~~~~~~~~~--~g~iD   75 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK----GLF----GVEVDVTDSDAVDRAFTAVEEH--QGPVE   75 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT----TSE----EEECCTTCHHHHHHHHHHHHHH--HSSCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhc----Cce----EEEEecCCHHHHHHHHHHHHHh--cCCce
Confidence            6899999999999999999999999999999987755421    110    11223   223222    3332  24699


Q ss_pred             EEEECCCc
Q psy2960         286 LALNCVGG  293 (405)
Q Consensus       286 vvld~~g~  293 (405)
                      +++++.|.
T Consensus        76 iLVnnAG~   83 (237)
T d1uzma1          76 VLVSNAGL   83 (237)
T ss_dssp             EEEEECSC
T ss_pred             EEEeeecc
Confidence            99999873

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.0016  Score=56.05  Aligned_cols=75  Identities=20%  Similarity=0.201  Sum_probs=51.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHH-HHcCCcEEe-Chh--hH-HHHhhhcCCCCCcEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYL-KSLGADYVF-TEE--EL-RNISRDASIPKPKLA  287 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~-~~lg~~~v~-~~~--d~-~~i~~~t~g~g~Dvv  287 (405)
                      .|+++||.||++++|.+.++.....|++|+.+.+++++    ++.. +..+..... |..  +. +...+.  -.++|++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~----l~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~id~l   78 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESK----LQELEKYPGIQTRVLDVTKKKQIDQFANE--VERLDVL   78 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHH----HGGGGGSTTEEEEECCTTCHHHHHHHHHH--CSCCSEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHH----HHHHHhccCCceeeeeccccccccccccc--cccceeE
Confidence            68999999999999999999999999999999866432    3333 334433222 222  22 223333  3578999


Q ss_pred             EECCCc
Q psy2960         288 LNCVGG  293 (405)
Q Consensus       288 ld~~g~  293 (405)
                      +++.|.
T Consensus        79 Vn~ag~   84 (245)
T d2ag5a1          79 FNVAGF   84 (245)
T ss_dssp             EECCCC
T ss_pred             Eecccc
Confidence            999873

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.0015  Score=55.94  Aligned_cols=108  Identities=19%  Similarity=0.233  Sum_probs=69.4

Q ss_pred             HHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE-E-eChhhHHHHhhh
Q psy2960         201 AYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-V-FTEEELRNISRD  278 (405)
Q Consensus       201 a~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v-~~~~d~~~i~~~  278 (405)
                      -+..+....+++||++||=.|+  |.|..+..+++..|++++++--+.+..+...+.+...|... + +...|   +.+.
T Consensus        21 ~~~~l~~~~~l~pg~~VLDiGC--G~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d---~~~~   95 (245)
T d1nkva_          21 KYATLGRVLRMKPGTRILDLGS--GSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHND---AAGY   95 (245)
T ss_dssp             HHHHHHHHTCCCTTCEEEEETC--TTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESC---CTTC
T ss_pred             HHHHHHHHcCCCCCCEEEEEcC--CCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhH---Hhhc
Confidence            3445667789999999999998  45778888999999999888655443333344455556431 1 21222   2222


Q ss_pred             cCCCCCcEEEECCCc-------hhHHHHHHhcccCCEEEEEe
Q psy2960         279 ASIPKPKLALNCVGG-------NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       279 t~g~g~Dvvld~~g~-------~~~~~~~~~l~~~G~~v~~g  313 (405)
                      .....+|+|+-.-.-       ..+.+..+.|+|||+++..-
T Consensus        96 ~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~  137 (245)
T d1nkva_          96 VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGE  137 (245)
T ss_dssp             CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             cccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEe
Confidence            234679998854321       23344568999999998753

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=96.74  E-value=0.00079  Score=58.02  Aligned_cols=102  Identities=15%  Similarity=0.119  Sum_probs=63.1

Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC--cEEEEecCCcchHHHHHHHHHcC-CcEE-eChhhHHHHhhhcCCC
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLG-ADYV-FTEEELRNISRDASIP  282 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~--~v~~~~~~~~~~~~~~~~~~~lg-~~~v-~~~~d~~~i~~~t~g~  282 (405)
                      ..++++||++||=.|+  |.|.++..+|++.|.  +|+++-.+++..+...+.+++++ .+.+ +...|+.   +.....
T Consensus        79 ~~l~i~pG~rVLEiG~--GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~---~~~~~~  153 (250)
T d1yb2a1          79 MRCGLRPGMDILEVGV--GSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIA---DFISDQ  153 (250)
T ss_dssp             --CCCCTTCEEEEECC--TTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTT---TCCCSC
T ss_pred             HHcCCCCcCEEEEeee--eCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeee---cccccc
Confidence            3479999999999998  458888999998764  56666433222222233333433 2222 1122322   222345


Q ss_pred             CCcEEEECCCc--hhHHHHHHhcccCCEEEEEe
Q psy2960         283 KPKLALNCVGG--NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       283 g~Dvvld~~g~--~~~~~~~~~l~~~G~~v~~g  313 (405)
                      .+|.|+--...  +.+..+.+.|+|||+++.+.
T Consensus       154 ~fD~V~ld~p~p~~~l~~~~~~LKpGG~lv~~~  186 (250)
T d1yb2a1         154 MYDAVIADIPDPWNHVQKIASMMKPGSVATFYL  186 (250)
T ss_dssp             CEEEEEECCSCGGGSHHHHHHTEEEEEEEEEEE
T ss_pred             eeeeeeecCCchHHHHHHHHHhcCCCceEEEEe
Confidence            68988755544  35567889999999999865

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.0066  Score=53.16  Aligned_cols=77  Identities=13%  Similarity=0.137  Sum_probs=47.6

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEe---cCCcchHHHHHHHHHcC---CcEE---eChhh---HHH-HhhhcCCC
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIV---RNRDDIDKLKSYLKSLG---ADYV---FTEEE---LRN-ISRDASIP  282 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~---~~~~~~~~~~~~~~~lg---~~~v---~~~~d---~~~-i~~~t~g~  282 (405)
                      .|||.||++|+|.+.+..+...|++++.+.   ++.+..+...+.++++.   ....   .|-.+   ... +.+. ..+
T Consensus         4 VvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~-~~g   82 (285)
T d1jtva_           4 VVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERV-TEG   82 (285)
T ss_dssp             EEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTC-TTS
T ss_pred             EEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhc-ccc
Confidence            468999999999999999999999865443   33223233344455543   2222   23322   333 3333 335


Q ss_pred             CCcEEEECCCc
Q psy2960         283 KPKLALNCVGG  293 (405)
Q Consensus       283 g~Dvvld~~g~  293 (405)
                      .+|+++++.|.
T Consensus        83 ~idilvnnag~   93 (285)
T d1jtva_          83 RVDVLVCNAGL   93 (285)
T ss_dssp             CCSEEEECCCC
T ss_pred             chhhhhhcccc
Confidence            79999998873

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.0027  Score=53.65  Aligned_cols=100  Identities=17%  Similarity=0.120  Sum_probs=61.9

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCC--cEEEEecCCcchHHHHHHHHHcCCc-----EE-eChhhHHHHhhhcCC
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLGAD-----YV-FTEEELRNISRDASI  281 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~G~--~v~~~~~~~~~~~~~~~~~~~lg~~-----~v-~~~~d~~~i~~~t~g  281 (405)
                      .++||++||-.|+  |.|..++.+|+..|.  +|+++-..++..+...+.+++.+.+     .+ +-..|...  .....
T Consensus        73 ~l~~g~~VLdiG~--GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~--~~~~~  148 (224)
T d1i1na_          73 QLHEGAKALDVGS--GSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRM--GYAEE  148 (224)
T ss_dssp             TSCTTCEEEEETC--TTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGG--CCGGG
T ss_pred             ccCCCCeEEEecC--CCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccc--ccchh
Confidence            7899999999998  568999999998764  5666643333323333333333321     11 11112111  01113


Q ss_pred             CCCcEEEECCCchhH-HHHHHhcccCCEEEEEe
Q psy2960         282 PKPKLALNCVGGNSA-TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       282 ~g~Dvvld~~g~~~~-~~~~~~l~~~G~~v~~g  313 (405)
                      ..||+|+-+.+-+.. ...++.|+|||+++..-
T Consensus       149 ~~fD~I~~~~~~~~ip~~l~~~LkpGG~LV~pv  181 (224)
T d1i1na_         149 APYDAIHVGAAAPVVPQALIDQLKPGGRLILPV  181 (224)
T ss_dssp             CCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             hhhhhhhhhcchhhcCHHHHhhcCCCcEEEEEE
Confidence            568999987766555 45679999999998854

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=96.68  E-value=0.0053  Score=52.81  Aligned_cols=98  Identities=20%  Similarity=0.228  Sum_probs=63.4

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEE
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALN  289 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld  289 (405)
                      ..++|++||=.|++  .|..++.+++ +|++|+++--+++..+...+.++..|.+..+-..+...   ......+|+|+.
T Consensus       117 ~~~~g~~VLDiGcG--sG~l~i~aa~-~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~---~~~~~~fD~V~a  190 (254)
T d2nxca1         117 HLRPGDKVLDLGTG--SGVLAIAAEK-LGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEA---ALPFGPFDLLVA  190 (254)
T ss_dssp             HCCTTCEEEEETCT--TSHHHHHHHH-TTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHH---HGGGCCEEEEEE
T ss_pred             hcCccCEEEEcccc--hhHHHHHHHh-cCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccc---cccccccchhhh
Confidence            46899999999983  4677776554 79999888666655555555666666543222222222   111357999987


Q ss_pred             CCCchhH----HHHHHhcccCCEEEEEe
Q psy2960         290 CVGGNSA----TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       290 ~~g~~~~----~~~~~~l~~~G~~v~~g  313 (405)
                      .......    ....+.|+|||+++..|
T Consensus       191 ni~~~~l~~l~~~~~~~LkpGG~lilSg  218 (254)
T d2nxca1         191 NLYAELHAALAPRYREALVPGGRALLTG  218 (254)
T ss_dssp             ECCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccHHHHHHHHHHhcCCCcEEEEEe
Confidence            6554433    33568899999998755

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.68  E-value=0.0037  Score=50.17  Aligned_cols=74  Identities=15%  Similarity=0.227  Sum_probs=48.7

Q ss_pred             HHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCC
Q psy2960         204 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIP  282 (405)
Q Consensus       204 al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~  282 (405)
                      .|.. .++.++++|||.|+ ||.+.+++..++..|++ +.++.|+.++.   ..+...++...+ +..         ...
T Consensus         8 ~l~~-~~~~~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~ka---~~L~~~~~~~~~-~~~---------~~~   72 (167)
T d1npya1           8 LIEK-YHLNKNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKTG---QYLAALYGYAYI-NSL---------ENQ   72 (167)
T ss_dssp             HHHH-TTCCTTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHHH---HHHHHHHTCEEE-SCC---------TTC
T ss_pred             HHHH-cCCCCCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHHHH---HHHHHhhhhhhh-hcc---------ccc
Confidence            4444 57778899999999 99999999999999985 45554443321   223334444332 111         124


Q ss_pred             CCcEEEECCC
Q psy2960         283 KPKLALNCVG  292 (405)
Q Consensus       283 g~Dvvld~~g  292 (405)
                      .+|+||||+.
T Consensus        73 ~~DliINaTp   82 (167)
T d1npya1          73 QADILVNVTS   82 (167)
T ss_dssp             CCSEEEECSS
T ss_pred             chhhheeccc
Confidence            6899999975

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=96.66  E-value=0.0037  Score=54.34  Aligned_cols=80  Identities=14%  Similarity=0.201  Sum_probs=52.3

Q ss_pred             CCCCEEEEeCCCc--HHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe--Ch---hhHHH----HhhhcC
Q psy2960         212 SPGDVVIQNGANS--ACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TE---EELRN----ISRDAS  280 (405)
Q Consensus       212 ~~g~~VLI~ga~G--~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~--~~---~d~~~----i~~~t~  280 (405)
                      -+|+++||.||+|  |+|.+.++.+...|++|+.+.++++..+...+...+.+...+.  +.   .+...    +.+.  
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--   80 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKD--   80 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH--
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHH--
Confidence            3699999999876  8999999999999999998887754333333333333332222  21   12222    2222  


Q ss_pred             CCCCcEEEECCCc
Q psy2960         281 IPKPKLALNCVGG  293 (405)
Q Consensus       281 g~g~Dvvld~~g~  293 (405)
                      -..+|+++++.|.
T Consensus        81 ~g~id~lV~nag~   93 (274)
T d2pd4a1          81 LGSLDFIVHSVAF   93 (274)
T ss_dssp             TSCEEEEEECCCC
T ss_pred             cCCCCeEEeeccc
Confidence            3568999998873

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=96.65  E-value=0.0055  Score=52.69  Aligned_cols=81  Identities=16%  Similarity=0.252  Sum_probs=54.0

Q ss_pred             CCCCEEEEeCCCc--HHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe--Ch---hhHHH-Hhh-hcCCC
Q psy2960         212 SPGDVVIQNGANS--ACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TE---EELRN-ISR-DASIP  282 (405)
Q Consensus       212 ~~g~~VLI~ga~G--~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~--~~---~d~~~-i~~-~t~g~  282 (405)
                      -.|+++||.||+|  |+|.+.+..+...|++|+.+.++++..+...+.....+.....  +.   .+... +.+ .....
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWP   82 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhccc
Confidence            3789999999988  7889999999999999998887755444444555555554433  21   11222 222 22345


Q ss_pred             CCcEEEECCC
Q psy2960         283 KPKLALNCVG  292 (405)
Q Consensus       283 g~Dvvld~~g  292 (405)
                      ..|+.+++.+
T Consensus        83 ~~d~~v~~a~   92 (258)
T d1qsga_          83 KFDGFVHSIG   92 (258)
T ss_dssp             SEEEEEECCC
T ss_pred             ccceEEEeec
Confidence            6799998875

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.53  E-value=0.0012  Score=55.79  Aligned_cols=96  Identities=17%  Similarity=0.200  Sum_probs=57.6

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHcC-------CcEEEEecCCcchHHHHHHHHH---------cCCcEE-eChhh
Q psy2960         209 NSLSPGDVVIQNGANSACGQNVIQIARHWG-------LKTINIVRNRDDIDKLKSYLKS---------LGADYV-FTEEE  271 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~aiqla~~~G-------~~v~~~~~~~~~~~~~~~~~~~---------lg~~~v-~~~~d  271 (405)
                      ..+++|++||..|+  |.|..++.+++..|       .+|+++-..+    +..+.+++         .+...+ +...|
T Consensus        76 ~~l~~g~~VLeIGt--GsGY~ta~la~l~g~~g~~~~~~V~~iE~~~----~l~~~a~~~l~~~~~~~~~~~nv~~~~~d  149 (223)
T d1r18a_          76 DHLKPGARILDVGS--GSGYLTACFYRYIKAKGVDADTRIVGIEHQA----ELVRRSKANLNTDDRSMLDSGQLLIVEGD  149 (223)
T ss_dssp             TTCCTTCEEEEESC--TTSHHHHHHHHHHHHSCCCTTCEEEEEESCH----HHHHHHHHHHHHHHHHHHHHTSEEEEESC
T ss_pred             hccCCCCeEEEecC--CCCHHHHHHHHHhhhccCCcccEEEEEecCH----HHHHHHHHhhhhcchhhcCccEEEEEecc
Confidence            37999999999998  55777777776653       3677664332    22332221         122222 11122


Q ss_pred             HHH-HhhhcCCCCCcEEEECCCchhHH-HHHHhcccCCEEEEEe
Q psy2960         272 LRN-ISRDASIPKPKLALNCVGGNSAT-NLLRTLVSKGVMVTYG  313 (405)
Q Consensus       272 ~~~-i~~~t~g~g~Dvvld~~g~~~~~-~~~~~l~~~G~~v~~g  313 (405)
                      ... ..   ....||.|+-+.+-+... ..++.|++||+++..-
T Consensus       150 ~~~~~~---~~~~fD~Iiv~~a~~~~p~~l~~~Lk~gG~lV~pv  190 (223)
T d1r18a_         150 GRKGYP---PNAPYNAIHVGAAAPDTPTELINQLASGGRLIVPV  190 (223)
T ss_dssp             GGGCCG---GGCSEEEEEECSCBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             cccccc---cccceeeEEEEeechhchHHHHHhcCCCcEEEEEE
Confidence            211 11   134789988877766554 4579999999998753

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.52  E-value=0.011  Score=43.91  Aligned_cols=92  Identities=8%  Similarity=0.034  Sum_probs=63.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      .|.+|||.|+ |.+|..-++.+...||+++++....  .++....+.+-+....-  +.+.+ ..   -.++++|+-+++
T Consensus        11 ~~k~vlVvG~-G~va~~ka~~ll~~ga~v~v~~~~~--~~~~~~~~~~~~i~~~~--~~~~~-~d---l~~~~lv~~at~   81 (113)
T d1pjqa1          11 RDRDCLIVGG-GDVAERKARLLLEAGARLTVNALTF--IPQFTVWANEGMLTLVE--GPFDE-TL---LDSCWLAIAATD   81 (113)
T ss_dssp             BTCEEEEECC-SHHHHHHHHHHHHTTBEEEEEESSC--CHHHHHHHTTTSCEEEE--SSCCG-GG---GTTCSEEEECCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeccC--ChHHHHHHhcCCceeec--cCCCH-HH---hCCCcEEeecCC
Confidence            5899999999 9999999999999999988876433  23334444332232221  11111 00   136799999999


Q ss_pred             chhHHH-HHHhcccCCEEEEEe
Q psy2960         293 GNSATN-LLRTLVSKGVMVTYG  313 (405)
Q Consensus       293 ~~~~~~-~~~~l~~~G~~v~~g  313 (405)
                      .+.... ..+..++.|.++.+.
T Consensus        82 d~~~n~~i~~~a~~~~ilVNv~  103 (113)
T d1pjqa1          82 DDTVNQRVSDAAESRRIFCNVV  103 (113)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEET
T ss_pred             CHHHHHHHHHHHHHcCCEEEeC
Confidence            887764 567888899998875

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.38  E-value=0.016  Score=46.86  Aligned_cols=108  Identities=15%  Similarity=0.139  Sum_probs=62.5

Q ss_pred             HHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEe-cCCcchHHHHHHHHHcC----C-cEEeChhhHHHHh
Q psy2960         203 RMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIV-RNRDDIDKLKSYLKSLG----A-DYVFTEEELRNIS  276 (405)
Q Consensus       203 ~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~-~~~~~~~~~~~~~~~lg----~-~~v~~~~d~~~i~  276 (405)
                      .++.+..---.+.+|+|.|+ ||.|.+++..+...|++.+.++ ++.+..++....+.+++    . ..+.+..+...+.
T Consensus         7 ~~l~~~~~~l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   85 (182)
T d1vi2a1           7 RAIKESGFDIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFA   85 (182)
T ss_dssp             HHHHHTTCCCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHH
T ss_pred             HHHHHcCCCcCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchh
Confidence            44554322236789999999 8999999999999999766665 44433333333333332    1 1223333333222


Q ss_pred             hhcCCCCCcEEEECCCchhH-------HHHHHhcccCCEEEEEe
Q psy2960         277 RDASIPKPKLALNCVGGNSA-------TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       277 ~~t~g~g~Dvvld~~g~~~~-------~~~~~~l~~~G~~v~~g  313 (405)
                      +.  -..+|+||||+.-...       ..-+..++++..++.+-
T Consensus        86 ~~--~~~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~  127 (182)
T d1vi2a1          86 EA--LASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECV  127 (182)
T ss_dssp             HH--HHTCSEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECC
T ss_pred             hh--hcccceeccccCCccccccchhhhhHHHhhhcchhhHHhh
Confidence            21  1357999999863211       11135567777777765

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=96.38  E-value=0.0025  Score=54.13  Aligned_cols=106  Identities=11%  Similarity=0.188  Sum_probs=66.9

Q ss_pred             HHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCC
Q psy2960         203 RMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASI  281 (405)
Q Consensus       203 ~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g  281 (405)
                      ..+.+.+.++||++||=.|+  |.|..+..+++. +++++++--|.+..+...+.+...|.+.+ +...|..++.  ...
T Consensus         6 ~~l~~~~~~~~~~rILDiGc--GtG~~~~~la~~-~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~--~~~   80 (234)
T d1xxla_           6 GLMIKTAECRAEHRVLDIGA--GAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP--FPD   80 (234)
T ss_dssp             HHHHHHHTCCTTCEEEEESC--TTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC--SCT
T ss_pred             HHHHHHhCCCCCCEEEEeCC--cCcHHHHHHHHh-CCeEEEEeCChhhhhhhhhhhccccccccccccccccccc--ccc
Confidence            34557789999999999998  568888888874 67888776554444444445555554322 2111211110  113


Q ss_pred             CCCcEEEECCCc-------hhHHHHHHhcccCCEEEEEe
Q psy2960         282 PKPKLALNCVGG-------NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       282 ~g~Dvvld~~g~-------~~~~~~~~~l~~~G~~v~~g  313 (405)
                      ..+|+|+.+-.-       ..+....+.|+|+|+++..-
T Consensus        81 ~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~  119 (234)
T d1xxla_          81 DSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVD  119 (234)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEE
Confidence            468999875442       22345679999999988753

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.33  E-value=0.0025  Score=55.13  Aligned_cols=99  Identities=18%  Similarity=0.210  Sum_probs=62.6

Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC--cEEEEecCCcchHHHHHHHH----HcC---CcEE-eChhhHHHHh
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLK----SLG---ADYV-FTEEELRNIS  276 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~--~v~~~~~~~~~~~~~~~~~~----~lg---~~~v-~~~~d~~~i~  276 (405)
                      ..++++||++||=.|+  |.|.++..+|+..|.  +++++-    .++++.+.++    .++   .+++ +...|..+  
T Consensus        90 ~~l~i~PG~~VLE~G~--GsG~lt~~La~~vgp~G~V~~~d----~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~--  161 (264)
T d1i9ga_          90 HEGDIFPGARVLEAGA--GSGALTLSLLRAVGPAGQVISYE----QRADHAEHARRNVSGCYGQPPDNWRLVVSDLAD--  161 (264)
T ss_dssp             HHTTCCTTCEEEEECC--TTSHHHHHHHHHHCTTSEEEEEC----SCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGG--
T ss_pred             HHhCCCCCCEEEecCc--CCcHHHHHHHHhhCCCcEEEEec----CCHHHHHHHHHhhhhhccCCCceEEEEeccccc--
Confidence            4489999999999998  669999999999875  555553    3333344443    221   1222 22222221  


Q ss_pred             hhcCCCCCcEEEECCCc--hhHHHHHHhcccCCEEEEEe
Q psy2960         277 RDASIPKPKLALNCVGG--NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       277 ~~t~g~g~Dvvld~~g~--~~~~~~~~~l~~~G~~v~~g  313 (405)
                      .......+|.|+--+..  +.+..+.+.|+|+|+++.+-
T Consensus       162 ~~~~~~~fDaV~ldlp~P~~~l~~~~~~LkpGG~lv~~~  200 (264)
T d1i9ga_         162 SELPDGSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYV  200 (264)
T ss_dssp             CCCCTTCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             ccccCCCcceEEEecCCHHHHHHHHHhccCCCCEEEEEe
Confidence            01123568977655554  44567889999999998764

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=96.19  E-value=0.037  Score=43.06  Aligned_cols=95  Identities=14%  Similarity=0.202  Sum_probs=67.3

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHcCCcEEeCh--hhHHH----------------
Q psy2960         215 DVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELRN----------------  274 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~--G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~--~d~~~----------------  274 (405)
                      ++|.|.|++|.+|..+.++.+..  ..++++.+... ..+...+.++++....++-.  .....                
T Consensus         3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~-N~~~L~~q~~ef~Pk~v~i~d~~~~~~l~~~~~~~~~~v~~g~   81 (150)
T d1r0ka2           3 RTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANR-NVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGA   81 (150)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESS-CHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEESH
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCC-CHHHHHHHHHhhccccceeccHHHHHHHHHHhhhcccccccCc
Confidence            78999999999999999999886  57888887654 45777888999998877522  11111                


Q ss_pred             --HhhhcCCCCCcEEEECCCc-hhHHHHHHhcccCCEEEE
Q psy2960         275 --ISRDASIPKPKLALNCVGG-NSATNLLRTLVSKGVMVT  311 (405)
Q Consensus       275 --i~~~t~g~g~Dvvld~~g~-~~~~~~~~~l~~~G~~v~  311 (405)
                        +.+.. ...+|+|+++..+ ..+...+..++.+-++..
T Consensus        82 ~~l~~~~-~~~~D~vv~Ai~G~~GL~~tl~ai~~gk~iaL  120 (150)
T d1r0ka2          82 DALVEAA-MMGADWTMAAIIGCAGLKATLAAIRKGKTVAL  120 (150)
T ss_dssp             HHHHHHH-TSCCSEEEECCCSGGGHHHHHHHHHTTSEEEE
T ss_pred             cchheec-ccccceeeeecCchhHHHHHHHHHhcCCEEEE
Confidence              11111 2458999998655 555667788877766544

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0028  Score=53.75  Aligned_cols=96  Identities=13%  Similarity=0.007  Sum_probs=56.9

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH----cCCcEEeChhhHHHHhhhcCCCCCcE
Q psy2960         211 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS----LGADYVFTEEELRNISRDASIPKPKL  286 (405)
Q Consensus       211 ~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~----lg~~~v~~~~d~~~i~~~t~g~g~Dv  286 (405)
                      ..+|.+||-.|+  |.|..+..+++..+.+++++--++    ..++.+++    .+....+-..+...+........+|.
T Consensus        51 ~~~g~~VLdIGc--G~G~~a~~~a~~~~~~v~~id~s~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~  124 (229)
T d1zx0a1          51 SSKGGRVLEVGF--GMAIAASKVQEAPIDEHWIIECND----GVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDG  124 (229)
T ss_dssp             TTTCEEEEEECC--TTSHHHHHHHTSCEEEEEEEECCH----HHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEE
T ss_pred             ccCCCeEEEeec--cchHHHHHHHHcCCCeEEEeCCCH----HHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence            368999999998  668899999987777777664333    33444443    33222221222222222222456888


Q ss_pred             EE-ECCCch-----------hHHHHHHhcccCCEEEEE
Q psy2960         287 AL-NCVGGN-----------SATNLLRTLVSKGVMVTY  312 (405)
Q Consensus       287 vl-d~~g~~-----------~~~~~~~~l~~~G~~v~~  312 (405)
                      ++ |.....           .+....+.|+|||+|+..
T Consensus       125 i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         125 ILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             EEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             eeecccccccccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence            74 654321           223356899999999764

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=96.07  E-value=0.0067  Score=52.93  Aligned_cols=106  Identities=14%  Similarity=0.089  Sum_probs=67.0

Q ss_pred             HHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc-EE-eChhhHHHHhhhcCCC
Q psy2960         205 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YV-FTEEELRNISRDASIP  282 (405)
Q Consensus       205 l~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~-~v-~~~~d~~~i~~~t~g~  282 (405)
                      +...+.+++|++||=.|+  |.|..+..+|+..|++|+++.-++...+...+.+...|.. .+ +...|+..+.  ....
T Consensus        59 l~~~~~l~~~~~vLDiGc--G~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~--~~~~  134 (282)
T d2o57a1          59 LAMTGVLQRQAKGLDLGA--GYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP--CEDN  134 (282)
T ss_dssp             HHHTTCCCTTCEEEEETC--TTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS--SCTT
T ss_pred             HHHhcCCCCCCEEEEeCC--CCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccccccccccccccccc--cccc
Confidence            445578999999999998  4678888999988999988865544433334444455542 11 2112221110  1135


Q ss_pred             CCcEEEECCCc-------hhHHHHHHhcccCCEEEEEec
Q psy2960         283 KPKLALNCVGG-------NSATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       283 g~Dvvld~~g~-------~~~~~~~~~l~~~G~~v~~g~  314 (405)
                      .+|+|+-.-.-       ..+..+.++|+|||+++....
T Consensus       135 sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~  173 (282)
T d2o57a1         135 SYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDP  173 (282)
T ss_dssp             CEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEe
Confidence            68999854321       233456799999999987653

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=96.05  E-value=0.0057  Score=55.00  Aligned_cols=81  Identities=10%  Similarity=0.087  Sum_probs=52.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc-CCcEEe-ChhhHHHHhhhcCCCCCcEEEEC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADYVF-TEEELRNISRDASIPKPKLALNC  290 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l-g~~~v~-~~~d~~~i~~~t~g~g~Dvvld~  290 (405)
                      .|++|||+||+|-+|...++.+...|.+|+++.++........+..+.. +...+. |-+|...+.+......+|+|+.+
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~~~   86 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHM   86 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhchhhhhhhh
Confidence            4799999999999999999999999999999987665433333222211 222222 33333322222223467999998


Q ss_pred             CCc
Q psy2960         291 VGG  293 (405)
Q Consensus       291 ~g~  293 (405)
                      ++.
T Consensus        87 aa~   89 (356)
T d1rkxa_          87 AAQ   89 (356)
T ss_dssp             CSC
T ss_pred             hcc
Confidence            864

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0057  Score=52.28  Aligned_cols=49  Identities=18%  Similarity=0.187  Sum_probs=40.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD  264 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~  264 (405)
                      +|+++||.||++|+|.+.++-+...|++|+.+.++.++.+   +..++++..
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~---~~~~~l~~~   52 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGE---AQAKKLGNN   52 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHH---HHHHHHCTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHH---HHHHHhCCC
Confidence            6999999999999999999999999999999888776543   344556554

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=96.03  E-value=0.0038  Score=52.55  Aligned_cols=104  Identities=12%  Similarity=0.177  Sum_probs=64.5

Q ss_pred             HHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCC
Q psy2960         205 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPK  283 (405)
Q Consensus       205 l~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g  283 (405)
                      +.+.++++++++||=.|+  |.|..+..+++. |++++++--+.+..+...+.+...+.+++ +-..|...+.  .....
T Consensus         7 ll~~~~l~~~~rVLDiGc--G~G~~~~~l~~~-~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~--~~~~~   81 (231)
T d1vl5a_           7 LMQIAALKGNEEVLDVAT--GGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP--FTDER   81 (231)
T ss_dssp             HHHHHTCCSCCEEEEETC--TTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC--SCTTC
T ss_pred             HHHhcCCCCcCEEEEecc--cCcHHHHHHHHh-CCEEEEEECCHHHHhhhhhccccccccccccccccccccc--ccccc
Confidence            345689999999999998  467777777754 78887775444433333444555665433 1111211111  11346


Q ss_pred             CcEEEECCCc-------hhHHHHHHhcccCCEEEEEe
Q psy2960         284 PKLALNCVGG-------NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       284 ~Dvvld~~g~-------~~~~~~~~~l~~~G~~v~~g  313 (405)
                      +|+|+..-.-       ..+....++|+|||+++..-
T Consensus        82 fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~  118 (231)
T d1vl5a_          82 FHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVD  118 (231)
T ss_dssp             EEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccccccccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            8999865432       22345679999999998764

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=96.02  E-value=0.0027  Score=51.85  Aligned_cols=101  Identities=8%  Similarity=0.027  Sum_probs=58.5

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE------EeCh-------hhHHHH
Q psy2960         209 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY------VFTE-------EELRNI  275 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~------v~~~-------~d~~~i  275 (405)
                      ..+.||.+||..|+  |.|..++.+|+. |++|+++--|++..+...+.+++.+...      ..+.       .|+..+
T Consensus        16 l~~~~~~rvLd~GC--G~G~~a~~la~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l   92 (201)
T d1pjza_          16 LNVVPGARVLVPLC--GKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL   92 (201)
T ss_dssp             HCCCTTCEEEETTT--CCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS
T ss_pred             cCCCCCCEEEEecC--cCCHHHHHHHHc-CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccccccc
Confidence            57899999999999  568999999974 9999999655443322222222222110      0000       011000


Q ss_pred             hhhcCCCCCcEEEECCCch---------hHHHHHHhcccCCEEEEEe
Q psy2960         276 SRDASIPKPKLALNCVGGN---------SATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       276 ~~~t~g~g~Dvvld~~g~~---------~~~~~~~~l~~~G~~v~~g  313 (405)
                      .. .....+|+|++...-.         ......++|+|+|+++...
T Consensus        93 ~~-~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_          93 TA-RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLIT  138 (201)
T ss_dssp             TH-HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             cc-ccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEE
Confidence            00 0023579998855421         2234568899999987654

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.96  E-value=0.01  Score=51.06  Aligned_cols=80  Identities=18%  Similarity=0.143  Sum_probs=49.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHH-HHHH--cCCcEEEEecCCcchHHHHHHHHHcC-CcEEe----Chhh---HHH----Hhh
Q psy2960         213 PGDVVIQNGANSACGQNVIQ-IARH--WGLKTINIVRNRDDIDKLKSYLKSLG-ADYVF----TEEE---LRN----ISR  277 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiq-la~~--~G~~v~~~~~~~~~~~~~~~~~~~lg-~~~v~----~~~d---~~~----i~~  277 (405)
                      .|+.++|.||++|+|.+.++ +|+.  .|++|+.+.++.++.++..+.+...+ ...+.    |-.+   ...    +.+
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~~~   84 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVRE   84 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHH
Confidence            57889999999999998775 4553  69999999877665444444443332 22221    3222   222    223


Q ss_pred             hc--CCCCCcEEEECCC
Q psy2960         278 DA--SIPKPKLALNCVG  292 (405)
Q Consensus       278 ~t--~g~g~Dvvld~~g  292 (405)
                      ..  .+...|+++++.|
T Consensus        85 ~~~~~~~~~~~lvnnag  101 (259)
T d1oaaa_          85 LPRPEGLQRLLLINNAA  101 (259)
T ss_dssp             SCCCTTCCEEEEEECCC
T ss_pred             hhhhccCceEEEEeccc
Confidence            21  2445788998765

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.94  E-value=0.046  Score=42.97  Aligned_cols=102  Identities=15%  Similarity=0.154  Sum_probs=67.4

Q ss_pred             HHHHHHhhc-CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhc
Q psy2960         201 AYRMLKDYN-SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDA  279 (405)
Q Consensus       201 a~~al~~~~-~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t  279 (405)
                      .+.++.+.. -.-.|++|+|.|- |-+|...++.++.+|++|+++-..    +-+.-.+.--|. .+...++.  +    
T Consensus        10 ~~~~~~r~t~~~l~Gk~v~V~Gy-G~iG~g~A~~~rg~G~~V~v~e~d----p~~al~A~~dG~-~v~~~~~a--~----   77 (163)
T d1li4a1          10 LIDGIKRATDVMIAGKVAVVAGY-GDVGKGCAQALRGFGARVIITEID----PINALQAAMEGY-EVTTMDEA--C----   77 (163)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSC----HHHHHHHHHTTC-EECCHHHH--T----
T ss_pred             HHHHHHHHhCceecCCEEEEecc-ccccHHHHHHHHhCCCeeEeeecc----cchhHHhhcCce-Eeeehhhh--h----
Confidence            344444433 3458999999999 999999999999999999988422    211111212233 33322211  1    


Q ss_pred             CCCCCcEEEECCCchhH--HHHHHhcccCCEEEEEeccC
Q psy2960         280 SIPKPKLALNCVGGNSA--TNLLRTLVSKGVMVTYGGMS  316 (405)
Q Consensus       280 ~g~g~Dvvld~~g~~~~--~~~~~~l~~~G~~v~~g~~~  316 (405)
                        ...|+++-|+|+...  .+.++.|+++-.+..+|..+
T Consensus        78 --~~adivvtaTGn~~vI~~eh~~~MKdgaIL~N~Ghfd  114 (163)
T d1li4a1          78 --QEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFD  114 (163)
T ss_dssp             --TTCSEEEECSSCSCSBCHHHHTTCCTTEEEEECSSST
T ss_pred             --hhccEEEecCCCccchhHHHHHhccCCeEEEEecccc
Confidence              245999999998543  45689999988888777443

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.83  E-value=0.028  Score=42.69  Aligned_cols=76  Identities=13%  Similarity=0.172  Sum_probs=51.9

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHH-HcCCcEEe-ChhhHHHHhhhcCCCCCcEEEECCCc
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLK-SLGADYVF-TEEELRNISRDASIPKPKLALNCVGG  293 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~-~lg~~~v~-~~~d~~~i~~~t~g~g~Dvvld~~g~  293 (405)
                      +|+|.|+ |.+|...++.+...|.+++++-.+    +++.+.+. +++...+. |..+.. +.+..+-...|.++-++..
T Consensus         2 ~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d----~~~~~~~~~~~~~~vi~Gd~~~~~-~l~~~~i~~a~~vv~~t~~   75 (132)
T d1lssa_           2 YIIIAGI-GRVGYTLAKSLSEKGHDIVLIDID----KDICKKASAEIDALVINGDCTKIK-TLEDAGIEDADMYIAVTGK   75 (132)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEEEEESC----HHHHHHHHHHCSSEEEESCTTSHH-HHHHTTTTTCSEEEECCSC
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCCcceecCC----hhhhhhhhhhhhhhhccCcccchh-hhhhcChhhhhhhcccCCc
Confidence            6899999 999999999999999998888533    33444444 45665444 333322 3333334568999999888


Q ss_pred             hhHH
Q psy2960         294 NSAT  297 (405)
Q Consensus       294 ~~~~  297 (405)
                      +...
T Consensus        76 d~~N   79 (132)
T d1lssa_          76 EEVN   79 (132)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6553

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=95.67  E-value=0.013  Score=52.39  Aligned_cols=42  Identities=24%  Similarity=0.361  Sum_probs=36.9

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcc
Q psy2960         209 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD  250 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~  250 (405)
                      .-+.+|++|||+||+|-+|...+..+...|.+|++++++.++
T Consensus         6 ~~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~   47 (342)
T d1y1pa1           6 AVLPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASK   47 (342)
T ss_dssp             CSSCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred             CCCCCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchh
Confidence            457789999999999999999999888889999999976544

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.55  E-value=0.012  Score=47.89  Aligned_cols=101  Identities=20%  Similarity=0.251  Sum_probs=62.9

Q ss_pred             hcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC-cEE-eChhhHHHHhhhcCCCCCc
Q psy2960         208 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA-DYV-FTEEELRNISRDASIPKPK  285 (405)
Q Consensus       208 ~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~-~~v-~~~~d~~~i~~~t~g~g~D  285 (405)
                      ..++++|++||=.|+  |.|..++.+|+. +++|+++-.+++..+...+.+++.|. +.+ +-..|..+.  ......+|
T Consensus        28 ~l~~~~g~~VLDiGc--GsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~--~~~~~~~D  102 (186)
T d1l3ia_          28 LAEPGKNDVAVDVGC--GTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA--LCKIPDID  102 (186)
T ss_dssp             HHCCCTTCEEEEESC--TTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH--HTTSCCEE
T ss_pred             hcCCCCCCEEEEEEC--CeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhc--ccccCCcC
Confidence            368999999999998  557777788765 56887775444444444455566775 232 111222221  12235789


Q ss_pred             EEEECCCch----hHHHHHHhcccCCEEEEEe
Q psy2960         286 LALNCVGGN----SATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       286 vvld~~g~~----~~~~~~~~l~~~G~~v~~g  313 (405)
                      .|+-..+..    .+..+.+.|+|+|+++...
T Consensus       103 ~v~~~~~~~~~~~~~~~~~~~LkpgG~lvi~~  134 (186)
T d1l3ia_         103 IAVVGGSGGELQEILRIIKDKLKPGGRIIVTA  134 (186)
T ss_dssp             EEEESCCTTCHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEEeCccccchHHHHHHHHHhCcCCEEEEEe
Confidence            888655432    2345678899999987653

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.02  Score=48.14  Aligned_cols=99  Identities=13%  Similarity=-0.056  Sum_probs=60.2

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc-CCc------------EEeChh--h--
Q psy2960         209 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GAD------------YVFTEE--E--  271 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l-g~~------------~v~~~~--d--  271 (405)
                      ..+.+|.+||..|+  |.|..+..+|+ .|++|+++--|    +..++.+++. +..            ......  .  
T Consensus        41 l~~~~~~rvLd~GC--G~G~~a~~LA~-~G~~V~gvD~S----~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  113 (229)
T d2bzga1          41 LKGKSGLRVFFPLC--GKAVEMKWFAD-RGHSVVGVEIS----ELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNIS  113 (229)
T ss_dssp             HTTCCSCEEEETTC--TTCTHHHHHHH-TTCEEEEECSC----HHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEE
T ss_pred             cCCCCCCEEEEeCC--CCcHHHHHHHh-CCCcEEEEeCC----HHHHHHHHHHhhccccccchhcccccceeeecCCcEE
Confidence            46789999999999  56899999987 69999888544    3335544432 211            111000  0  


Q ss_pred             HH-H-Hhhh--cCCCCCcEEEECCCc-----h----hHHHHHHhcccCCEEEEEec
Q psy2960         272 LR-N-ISRD--ASIPKPKLALNCVGG-----N----SATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       272 ~~-~-i~~~--t~g~g~Dvvld~~g~-----~----~~~~~~~~l~~~G~~v~~g~  314 (405)
                      +. . +..+  .....+|+|+++..-     +    ......++|+|+|+++....
T Consensus       114 ~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~  169 (229)
T d2bzga1         114 LYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVL  169 (229)
T ss_dssp             EEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEc
Confidence            00 0 1111  224568999987631     1    22345799999999877653

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.013  Score=52.09  Aligned_cols=104  Identities=18%  Similarity=0.233  Sum_probs=59.5

Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC--cEEEEecCCcchHHHHHHHHHcC-----------CcEE-eChhhH
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLG-----------ADYV-FTEEEL  272 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~--~v~~~~~~~~~~~~~~~~~~~lg-----------~~~v-~~~~d~  272 (405)
                      ..++++||++||=.|+  |.|.+++.+|+..|.  +|+++-.+++..+...+.+++.+           .+.+ +...|+
T Consensus        92 ~~l~i~pG~rVLE~Gt--GsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di  169 (324)
T d2b25a1          92 SMMDINPGDTVLEAGS--GSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDI  169 (324)
T ss_dssp             HHHTCCTTCEEEEECC--TTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCT
T ss_pred             HHhCCCCCCEEEEecc--cccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecch
Confidence            3479999999999988  559999999999876  56666433222211122222221           1112 112222


Q ss_pred             HH-HhhhcCCCCCcEEEECCCc--hhHHHHHHhcccCCEEEEEe
Q psy2960         273 RN-ISRDASIPKPKLALNCVGG--NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       273 ~~-i~~~t~g~g~Dvvld~~g~--~~~~~~~~~l~~~G~~v~~g  313 (405)
                      .. .... ....+|.||=-+..  +.+..+.+.|+|||+++.+.
T Consensus       170 ~~~~~~~-~~~~fD~V~LD~p~P~~~l~~~~~~LKpGG~lv~~~  212 (324)
T d2b25a1         170 SGATEDI-KSLTFDAVALDMLNPHVTLPVFYPHLKHGGVCAVYV  212 (324)
T ss_dssp             TCCC--------EEEEEECSSSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred             hhccccc-CCCCcceEeecCcCHHHHHHHHHHhccCCCEEEEEe
Confidence            21 1111 12357877643343  45677889999999999875

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.44  E-value=0.0054  Score=43.83  Aligned_cols=85  Identities=13%  Similarity=0.041  Sum_probs=52.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      .|++|+|.|. |..|+++++++...|++|++.-...+..  ..+.++. +....+...+...+.      .+|.|+-+.|
T Consensus         4 ~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~------~~d~vi~SPG   73 (93)
T d2jfga1           4 QGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMTPP--GLDKLPE-AVERHTGSLNDEWLM------AADLIVASPG   73 (93)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSSCT--TGGGSCT-TSCEEESBCCHHHHH------HCSEEEECTT
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcCch--hHHHHhh-ccceeecccchhhhc------cCCEEEECCC
Confidence            5789999999 9999999999999999999887543321  1122222 233333322111122      4689998888


Q ss_pred             chhHHHHHHhcccCC
Q psy2960         293 GNSATNLLRTLVSKG  307 (405)
Q Consensus       293 ~~~~~~~~~~l~~~G  307 (405)
                      -+.....++.+...|
T Consensus        74 i~~~~~~~~~a~~~g   88 (93)
T d2jfga1          74 IALAHPSLSAAADAG   88 (93)
T ss_dssp             SCTTSHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHcC
Confidence            655444444444433

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=95.38  E-value=0.022  Score=48.74  Aligned_cols=75  Identities=12%  Similarity=0.205  Sum_probs=48.9

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchH-HHHHHHHHc-CCcEEeC------h---hh-HHH----Hhhhc
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDID-KLKSYLKSL-GADYVFT------E---EE-LRN----ISRDA  279 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~-~~~~~~~~l-g~~~v~~------~---~d-~~~----i~~~t  279 (405)
                      +.||+||++|+|.+.+..+...|++|+.+.++.++.. +..+...+. +.+.+..      .   ++ ...    +.+. 
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   81 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRA-   81 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHH-
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHHH-
Confidence            4699999999999999999999999999987755432 223333333 3433321      1   11 111    2222 


Q ss_pred             CCCCCcEEEECCC
Q psy2960         280 SIPKPKLALNCVG  292 (405)
Q Consensus       280 ~g~g~Dvvld~~g  292 (405)
                       .+++|+++++.|
T Consensus        82 -~g~iDilvnnAG   93 (266)
T d1mxha_          82 -FGRCDVLVNNAS   93 (266)
T ss_dssp             -HSCCCEEEECCC
T ss_pred             -hCCCCEEEECCc
Confidence             247999999998

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=95.37  E-value=0.013  Score=52.35  Aligned_cols=77  Identities=10%  Similarity=0.011  Sum_probs=47.6

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHH---HHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEEECC
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLK---SYLKSLGADYV-FTEEELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~---~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                      +|||+||+|-+|...+..+...|.+|+++.+.....+...   +....-....+ .|-.|...+.+.....++|+||.++
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViHlA   81 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFA   81 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEECC
Confidence            6999999999999999999999999998854222111122   22222233333 2333332232222234789999987


Q ss_pred             C
Q psy2960         292 G  292 (405)
Q Consensus       292 g  292 (405)
                      +
T Consensus        82 a   82 (338)
T d1udca_          82 G   82 (338)
T ss_dssp             S
T ss_pred             C
Confidence            5

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=95.36  E-value=0.045  Score=43.75  Aligned_cols=80  Identities=9%  Similarity=0.031  Sum_probs=54.6

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeC------------hhhHHHHhhhcCCC
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT------------EEELRNISRDASIP  282 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~------------~~d~~~i~~~t~g~  282 (405)
                      ++|.|.|+ |.+|++.+..+...|.+|....+++    ++.+..++.+......            +.+..+   .  -.
T Consensus         2 k~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e---~--~~   71 (184)
T d1bg6a2           2 KTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDA----QRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGL---A--VK   71 (184)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCH----HHHHHHHHHTSEEEESSSCCEEECCSEEESCHHH---H--HT
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCEEEEEECCH----HHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHh---H--hc
Confidence            68999999 9999999999999999999887543    3456666655432221            112222   1  13


Q ss_pred             CCcEEEECCCchhHHHHHHhcc
Q psy2960         283 KPKLALNCVGGNSATNLLRTLV  304 (405)
Q Consensus       283 g~Dvvld~~g~~~~~~~~~~l~  304 (405)
                      ..|++|-|+........++.++
T Consensus        72 ~aD~iii~v~~~~~~~~~~~i~   93 (184)
T d1bg6a2          72 DADVILIVVPAIHHASIAANIA   93 (184)
T ss_dssp             TCSEEEECSCGGGHHHHHHHHG
T ss_pred             CCCEEEEEEchhHHHHHHHHhh
Confidence            5799999998877666554433

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=95.35  E-value=0.026  Score=48.37  Aligned_cols=80  Identities=16%  Similarity=0.172  Sum_probs=51.3

Q ss_pred             CCCCCEEEEeCCC--cHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE---eCh---hhH---HH-Hhh-
Q psy2960         211 LSPGDVVIQNGAN--SACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV---FTE---EEL---RN-ISR-  277 (405)
Q Consensus       211 ~~~g~~VLI~ga~--G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v---~~~---~d~---~~-i~~-  277 (405)
                      +-.|+++||.||+  .|+|.+.++-+...|++|+.+.++.++..  .+..+.++....   .|-   ++.   .+ +.+ 
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~--~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~   80 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLI--QRITDRLPAKAPLLELDVQNEEHLASLAGRVTEA   80 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHH--HHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHH--HHHHHHcCCceeeEeeecccccccccccchhhhc
Confidence            4479999999964  47999999999999999998876544321  223344554322   222   221   12 333 


Q ss_pred             hcCCCCCcEEEECCC
Q psy2960         278 DASIPKPKLALNCVG  292 (405)
Q Consensus       278 ~t~g~g~Dvvld~~g  292 (405)
                      ......+|+++++.|
T Consensus        81 ~~~~~~ld~~i~~ag   95 (268)
T d2h7ma1          81 IGAGNKLDGVVHSIG   95 (268)
T ss_dssp             HCTTCCEEEEEECCC
T ss_pred             cccCCCcceeeeccc
Confidence            233456899999987

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.34  E-value=0.037  Score=46.78  Aligned_cols=102  Identities=11%  Similarity=0.094  Sum_probs=61.1

Q ss_pred             HHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCC
Q psy2960         204 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPK  283 (405)
Q Consensus       204 al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g  283 (405)
                      .+.......++++||=.|+  |.|..+..+++ .|++++++--+++..+...+.++..+...-+-..|.   .++.-...
T Consensus        32 ~~~~~~~~~~~~~iLDiGc--GtG~~~~~l~~-~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~---~~l~~~~~  105 (251)
T d1wzna1          32 EIFKEDAKREVRRVLDLAC--GTGIPTLELAE-RGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDV---LEIAFKNE  105 (251)
T ss_dssp             HHHHHTCSSCCCEEEEETC--TTCHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCG---GGCCCCSC
T ss_pred             HHHHHhcCCCCCEEEEeCC--CCCccchhhcc-cceEEEEEeeccccccccccccccccccchheehhh---hhcccccc
Confidence            3444456678889999999  34888888887 688888775554433333334444443321211222   22222457


Q ss_pred             CcEEEECCCc----------hhHHHHHHhcccCCEEEE
Q psy2960         284 PKLALNCVGG----------NSATNLLRTLVSKGVMVT  311 (405)
Q Consensus       284 ~Dvvld~~g~----------~~~~~~~~~l~~~G~~v~  311 (405)
                      +|+|+.+.+.          ..+....++|+|||.++.
T Consensus       106 fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii  143 (251)
T d1wzna1         106 FDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT  143 (251)
T ss_dssp             EEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEE
Confidence            8998875432          123345789999999876

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=95.24  E-value=0.029  Score=49.53  Aligned_cols=77  Identities=18%  Similarity=0.201  Sum_probs=49.0

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecC-CcchHHHHHHHHHcCCcEEe--ChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRN-RDDIDKLKSYLKSLGADYVF--TEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~-~~~~~~~~~~~~~lg~~~v~--~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      +|||+||+|-+|...+..+...|.+|+++.+- ......+++.+...+.-.++  |-.+.+.+.+...+..+|+|+.+.+
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~aa   81 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAG   81 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEeecc
Confidence            79999999999999999998899999887421 11223344555554432332  3333222323222346899999886

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=95.14  E-value=0.036  Score=48.13  Aligned_cols=78  Identities=15%  Similarity=0.264  Sum_probs=52.5

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcch----HHHHHHHHHcCCcEEe-ChhhHHHHhhhcCCCCCcEEE
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDI----DKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLAL  288 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~----~~~~~~~~~lg~~~v~-~~~d~~~i~~~t~g~g~Dvvl  288 (405)
                      -.+|||.||+|-+|...+..+...|.+|++++++....    ......+...+++.+. |..|...+.+..  .+.+.++
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~--~~~~~~~   80 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDAL--KQVDVVI   80 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHH--TTCSEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhc--cCcchhh
Confidence            35799999999999999999999999999998765432    2233444555665553 334433333332  3568888


Q ss_pred             ECCCc
Q psy2960         289 NCVGG  293 (405)
Q Consensus       289 d~~g~  293 (405)
                      .+.+.
T Consensus        81 ~~~~~   85 (312)
T d1qyda_          81 SALAG   85 (312)
T ss_dssp             ECCCC
T ss_pred             hhhhh
Confidence            87753

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.14  E-value=0.019  Score=47.79  Aligned_cols=71  Identities=18%  Similarity=0.101  Sum_probs=44.4

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcE--EEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEEECC
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKT--INIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v--~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                      .+|||.||+|.+|...+..+...|.++  +...++.++    .+.. .-+...+ .|..+.....+..  .++|.|+.+.
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~----~~~~-~~~~~~~~~d~~~~~~~~~~~--~~~d~vi~~a   76 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQG----KEKI-GGEADVFIGDITDADSINPAF--QGIDALVILT   76 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHH----HHHT-TCCTTEEECCTTSHHHHHHHH--TTCSEEEECC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHH----HHhc-cCCcEEEEeeecccccccccc--ccceeeEEEE
Confidence            489999999999999999999999764  444444321    2221 1233433 2334433333332  3689999987


Q ss_pred             C
Q psy2960         292 G  292 (405)
Q Consensus       292 g  292 (405)
                      +
T Consensus        77 ~   77 (252)
T d2q46a1          77 S   77 (252)
T ss_dssp             C
T ss_pred             e
Confidence            6

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.11  E-value=0.023  Score=47.71  Aligned_cols=101  Identities=16%  Similarity=0.128  Sum_probs=63.0

Q ss_pred             hcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC--cEEEEecCCcchHHHHHHHHHcCCcEEe--ChhhHHHHhhhcCCCC
Q psy2960         208 YNSLSPGDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLGADYVF--TEEELRNISRDASIPK  283 (405)
Q Consensus       208 ~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~--~v~~~~~~~~~~~~~~~~~~~lg~~~v~--~~~d~~~i~~~t~g~g  283 (405)
                      ...++||++||=.|+  |.|..+..+|+..|.  +|+++--+++..+...+.++..+....+  +.++.......  ...
T Consensus        68 ~l~i~pG~~VLDlGa--GsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~--~~~  143 (227)
T d1g8aa_          68 NFPIKPGKSVLYLGI--ASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRAL--VPK  143 (227)
T ss_dssp             CCCCCTTCEEEEETT--TSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTT--CCC
T ss_pred             ccccCCCCEEEEecc--CCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCccccccc--ccc
Confidence            368999999999998  568999999999874  6777754444334444444444432222  22222211111  245


Q ss_pred             CcEEEECCCch-----hHHHHHHhcccCCEEEEE
Q psy2960         284 PKLALNCVGGN-----SATNLLRTLVSKGVMVTY  312 (405)
Q Consensus       284 ~Dvvld~~g~~-----~~~~~~~~l~~~G~~v~~  312 (405)
                      +|+++..+...     .+.++.+.|+++|+++..
T Consensus       144 vD~i~~d~~~~~~~~~~l~~~~~~LkpgG~lvi~  177 (227)
T d1g8aa_         144 VDVIFEDVAQPTQAKILIDNAEVYLKRGGYGMIA  177 (227)
T ss_dssp             EEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             eEEEEEEccccchHHHHHHHHHHhcccCCeEEEE
Confidence            78888655421     234567899999998875

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.11  E-value=0.014  Score=48.47  Aligned_cols=98  Identities=16%  Similarity=0.206  Sum_probs=58.5

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEE
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALN  289 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld  289 (405)
                      .++++++||=.||  |.|..+..+++ .|++++++--+.+..+...+.+...+.....-..|...+.  .....+|+|+-
T Consensus        34 ~l~~~~~ILDiGc--G~G~~~~~la~-~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~--~~~~~fD~I~~  108 (226)
T d1ve3a1          34 YMKKRGKVLDLAC--GVGGFSFLLED-YGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS--FEDKTFDYVIF  108 (226)
T ss_dssp             SCCSCCEEEEETC--TTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCC--SCTTCEEEEEE
T ss_pred             hcCCCCEEEEECC--CcchhhhhHhh-hhcccccccccccchhhhhhhhcccccccccccccccccc--ccCcCceEEEE
Confidence            4678999999999  45888888887 4888888865544433333444444432111111111110  11356899886


Q ss_pred             CCCch---------hHHHHHHhcccCCEEEEE
Q psy2960         290 CVGGN---------SATNLLRTLVSKGVMVTY  312 (405)
Q Consensus       290 ~~g~~---------~~~~~~~~l~~~G~~v~~  312 (405)
                      ...-.         .+....+.|+|||+++..
T Consensus       109 ~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~  140 (226)
T d1ve3a1         109 IDSIVHFEPLELNQVFKEVRRVLKPSGKFIMY  140 (226)
T ss_dssp             ESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ecchhhCChhHHHHHHHHHHHHcCcCcEEEEE
Confidence            44311         123456889999998754

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=95.10  E-value=0.015  Score=50.37  Aligned_cols=33  Identities=12%  Similarity=0.109  Sum_probs=29.1

Q ss_pred             EEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc
Q psy2960         217 VIQNGANSACGQNVIQIARHWGLKTINIVRNRD  249 (405)
Q Consensus       217 VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~  249 (405)
                      +||.||++|+|.+.++.+...|++|+.+.++.+
T Consensus         5 AlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   37 (284)
T d1e7wa_           5 ALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSA   37 (284)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCH
Confidence            589999999999999999999999998876543

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.08  E-value=0.0077  Score=48.66  Aligned_cols=86  Identities=10%  Similarity=0.076  Sum_probs=46.1

Q ss_pred             HHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc-CCcEEeChhhHHHHhhhcCC
Q psy2960         203 RMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADYVFTEEELRNISRDASI  281 (405)
Q Consensus       203 ~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l-g~~~v~~~~d~~~i~~~t~g  281 (405)
                      .+|.+...--+|++|||.|+ ||++.+++..+...| +++++.|+.++.+...+.+... ..+. ...-++..+..  .-
T Consensus         7 ~~l~~~~~~~~~k~vlIlGa-GG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~-~~~~~~~~~~~--~~   81 (177)
T d1nvta1           7 MALEEEIGRVKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKF-GEEVKFSGLDV--DL   81 (177)
T ss_dssp             HHHHHHHCCCCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCH-HHHEEEECTTC--CC
T ss_pred             HHHHHhCCCcCCCEEEEECC-cHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhh-hhhhhhhhhhh--cc
Confidence            34444333347899999999 899998887765555 6666666654433333333221 1110 00000000111  12


Q ss_pred             CCCcEEEECCCc
Q psy2960         282 PKPKLALNCVGG  293 (405)
Q Consensus       282 ~g~Dvvld~~g~  293 (405)
                      ..+|++++|+..
T Consensus        82 ~~~dliIn~tp~   93 (177)
T d1nvta1          82 DGVDIIINATPI   93 (177)
T ss_dssp             TTCCEEEECSCT
T ss_pred             chhhhhccCCcc
Confidence            457999999864

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=95.02  E-value=0.19  Score=38.87  Aligned_cols=96  Identities=9%  Similarity=0.237  Sum_probs=66.2

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHcCCcEEeCh--hhHH---H-------------
Q psy2960         215 DVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--EELR---N-------------  274 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~--G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~--~d~~---~-------------  274 (405)
                      ++|.|.|++|.+|..+..+.+..  ..++++.+... ..+...+.+.++....++-.  ....   .             
T Consensus         2 K~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~-N~~~L~~q~~~f~pk~v~i~d~~~~~~l~~~l~~~~~~~~~~~   80 (151)
T d1q0qa2           2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGK-NVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLS   80 (151)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESS-CHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecC-cHHHHHHHHHHHhhcccccccHHHHHHHHHHhhhhcccccccc
Confidence            36999999999999999999987  56888877554 45777888889988877532  1111   1             


Q ss_pred             ----HhhhcCCCCCcEEEECCCc-hhHHHHHHhcccCCEEEE
Q psy2960         275 ----ISRDASIPKPKLALNCVGG-NSATNLLRTLVSKGVMVT  311 (405)
Q Consensus       275 ----i~~~t~g~g~Dvvld~~g~-~~~~~~~~~l~~~G~~v~  311 (405)
                          +.+......+|+|+.+..+ ..+...+..++.+-++..
T Consensus        81 g~~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik~gk~iaL  122 (151)
T d1q0qa2          81 GQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTILL  122 (151)
T ss_dssp             SHHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHTTCEEEE
T ss_pred             ChHHHHHHhcCCCCCEEEEecCcccHHHHHHHHHhcCCeEEE
Confidence                2222223568999998866 444556777776655443

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.00  E-value=0.054  Score=49.39  Aligned_cols=46  Identities=20%  Similarity=0.209  Sum_probs=36.0

Q ss_pred             HHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCC
Q psy2960         200 TAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNR  248 (405)
Q Consensus       200 ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~  248 (405)
                      .....+ +..++++|+++|=.|+  |+|..+.++|+..|+ +++++--++
T Consensus       204 ~i~~Il-~~l~Lkpgd~fLDLGC--G~G~~vl~aA~~~g~~~v~GIDiS~  250 (406)
T d1u2za_         204 FLSDVY-QQCQLKKGDTFMDLGS--GVGNCVVQAALECGCALSFGCEIMD  250 (406)
T ss_dssp             HHHHHH-HHTTCCTTCEEEEESC--TTSHHHHHHHHHHCCSEEEEEECCH
T ss_pred             HHHHHH-HHhCCCCCCEEEeCCC--CCcHHHHHHHHHcCCCeEEEEeCCH
Confidence            344445 4479999999998887  789999999999998 577775443

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=94.99  E-value=0.093  Score=41.21  Aligned_cols=85  Identities=14%  Similarity=0.096  Sum_probs=55.9

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC-cEEeChhhHHHHhhhcCCCCCcEEEECCCch
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA-DYVFTEEELRNISRDASIPKPKLALNCVGGN  294 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~-~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~~  294 (405)
                      +|.|.|+ |.+|...+..++..|.+|++..++    ++..+.+++.|. +...+..+.  +      ...|+||-|+...
T Consensus         2 kI~iIG~-G~mG~~lA~~l~~~g~~V~~~d~~----~~~~~~a~~~~~~~~~~~~~~~--~------~~~DiIilavp~~   68 (165)
T d2f1ka2           2 KIGVVGL-GLIGASLAGDLRRRGHYLIGVSRQ----QSTCEKAVERQLVDEAGQDLSL--L------QTAKIIFLCTPIQ   68 (165)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEEEECSC----HHHHHHHHHTTSCSEEESCGGG--G------TTCSEEEECSCHH
T ss_pred             EEEEEee-cHHHHHHHHHHHHCCCEEEEEECC----chHHHHHHHhhccceeeeeccc--c------cccccccccCcHh
Confidence            5899998 999999888888999998887433    345677778874 444432211  2      3568888888765


Q ss_pred             hHHHHHH----hcccCCEEEEEe
Q psy2960         295 SATNLLR----TLVSKGVMVTYG  313 (405)
Q Consensus       295 ~~~~~~~----~l~~~G~~v~~g  313 (405)
                      .....++    .+.++-.++.++
T Consensus        69 ~~~~vl~~l~~~l~~~~iv~~~~   91 (165)
T d2f1ka2          69 LILPTLEKLIPHLSPTAIVTDVA   91 (165)
T ss_dssp             HHHHHHHHHGGGSCTTCEEEECC
T ss_pred             hhhhhhhhhhhhcccccceeecc
Confidence            5544433    344455555554

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.98  E-value=0.018  Score=48.45  Aligned_cols=75  Identities=21%  Similarity=0.303  Sum_probs=48.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCC--cEEEEecCCcchHHHHHHHHHcCCcE-EeChhhHHHHhhhcCCCCCcEEEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLGADY-VFTEEELRNISRDASIPKPKLALN  289 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~--~v~~~~~~~~~~~~~~~~~~~lg~~~-v~~~~d~~~i~~~t~g~g~Dvvld  289 (405)
                      .+.+|||.||+|-+|...++.+...|.  +++++++++.....  +....  ... +.|..+.+.+.+.  -.++|+++.
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~--~~~~~--i~~~~~D~~~~~~~~~~--~~~~d~vi~   86 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDE--EAYKN--VNQEVVDFEKLDDYASA--FQGHDVGFC   86 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCS--GGGGG--CEEEECCGGGGGGGGGG--GSSCSEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcc--cccce--eeeeeeccccccccccc--ccccccccc
Confidence            457999999999999999999988885  78888875433211  11111  122 2344443333333  246899999


Q ss_pred             CCCc
Q psy2960         290 CVGG  293 (405)
Q Consensus       290 ~~g~  293 (405)
                      |+|.
T Consensus        87 ~~~~   90 (232)
T d2bkaa1          87 CLGT   90 (232)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            9984

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.97  E-value=0.024  Score=51.64  Aligned_cols=31  Identities=16%  Similarity=0.230  Sum_probs=28.5

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEE
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINI  244 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~  244 (405)
                      |.+|||+||+|-+|..++..+...|.+|+++
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~i   31 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIV   31 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEE
Confidence            7899999999999999999999999999887

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.81  E-value=0.066  Score=44.17  Aligned_cols=101  Identities=18%  Similarity=0.092  Sum_probs=62.4

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHcCCcEEe--ChhhHHHHhhhcCCCCCc
Q psy2960         209 NSLSPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGADYVF--TEEELRNISRDASIPKPK  285 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~lg~~~v~--~~~d~~~i~~~t~g~g~D  285 (405)
                      ..++||++||=.|+  |.|..+..+|+..+. +|+++--+++..+...+.++..+....+  +.++.......  ...+|
T Consensus        52 l~lkpg~~VLDlGc--G~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~--~~~vd  127 (209)
T d1nt2a_          52 LKLRGDERVLYLGA--ASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGI--VEKVD  127 (209)
T ss_dssp             CCCCSSCEEEEETC--TTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTT--CCCEE
T ss_pred             CCCCCCCEEEEeCC--cCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccc--cceEE
Confidence            58999999999999  457788888988764 6777755544444445555565533222  22222111111  23568


Q ss_pred             EEEECCCc-----hhHHHHHHhcccCCEEEEEe
Q psy2960         286 LALNCVGG-----NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       286 vvld~~g~-----~~~~~~~~~l~~~G~~v~~g  313 (405)
                      +++..+..     ..+.++.+.|+|+|+++..-
T Consensus       128 ~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         128 LIYQDIAQKNQIEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             EEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEecccChhhHHHHHHHHHHHhccCCeEEEEE
Confidence            87765532     12345678999999998764

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.71  E-value=0.016  Score=49.90  Aligned_cols=32  Identities=16%  Similarity=0.235  Sum_probs=28.9

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecC
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRN  247 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~  247 (405)
                      +|||+||+|-+|...+..++..|.+|+++.+.
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~   34 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQ   34 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeech
Confidence            69999999999999999999999999888643

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.66  E-value=0.04  Score=41.65  Aligned_cols=73  Identities=10%  Similarity=0.060  Sum_probs=55.0

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCCchh
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNS  295 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~~~  295 (405)
                      +|.|+|++|-+|++..+++...|.+++...+.+..              ..              -..+|++||.+..+.
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~--------------~~--------------~~~~DVvIDFS~p~~   53 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV--------------EE--------------LDSPDVVIDFSSPEA   53 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE--------------EE--------------CSCCSEEEECSCGGG
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcH--------------HH--------------hccCCEEEEecCHHH
Confidence            68999999999999999999999988776632110              00              124799999999888


Q ss_pred             HHHHHHhcccCCEEEEEeccC
Q psy2960         296 ATNLLRTLVSKGVMVTYGGMS  316 (405)
Q Consensus       296 ~~~~~~~l~~~G~~v~~g~~~  316 (405)
                      +.+.++.+...+.=+.+|...
T Consensus        54 ~~~~l~~~~~~~~p~ViGTTG   74 (128)
T d1vm6a3          54 LPKTVDLCKKYRAGLVLGTTA   74 (128)
T ss_dssp             HHHHHHHHHHHTCEEEECCCS
T ss_pred             HHHHHHHHHhcCCCEEEEcCC
Confidence            888877766667667777544

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.49  E-value=0.062  Score=47.78  Aligned_cols=79  Identities=9%  Similarity=0.031  Sum_probs=48.6

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcc---hHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEEEC
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDD---IDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLALNC  290 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~---~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvld~  290 (405)
                      +.|||+||+|-+|...+..+...|.+|+++.+....   .....+....-+...+ .|-+|.+.+.+.....++|+|+.+
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vihl   81 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHF   81 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEEEc
Confidence            579999999999999999999999999887432111   1112222233334333 233443333332223479999998


Q ss_pred             CCc
Q psy2960         291 VGG  293 (405)
Q Consensus       291 ~g~  293 (405)
                      .+.
T Consensus        82 Aa~   84 (347)
T d1z45a2          82 AGL   84 (347)
T ss_dssp             CSC
T ss_pred             ccc
Confidence            863

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=94.43  E-value=0.034  Score=46.69  Aligned_cols=93  Identities=13%  Similarity=0.178  Sum_probs=61.4

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEE
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALN  289 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld  289 (405)
                      .++++.+||=.|+  |.|..+..+++ .|++++++--    ++..++.+++.+.+..+..+ ..++.  .....+|+|+.
T Consensus        39 ~~~~~~~vLDiGc--G~G~~~~~l~~-~~~~v~giD~----s~~~l~~a~~~~~~~~~~~~-~~~l~--~~~~~fD~ii~  108 (246)
T d2avna1          39 YLKNPCRVLDLGG--GTGKWSLFLQE-RGFEVVLVDP----SKEMLEVAREKGVKNVVEAK-AEDLP--FPSGAFEAVLA  108 (246)
T ss_dssp             HCCSCCEEEEETC--TTCHHHHHHHT-TTCEEEEEES----CHHHHHHHHHHTCSCEEECC-TTSCC--SCTTCEEEEEE
T ss_pred             hcCCCCEEEEECC--CCchhcccccc-cceEEEEeec----cccccccccccccccccccc-ccccc--cccccccceee
Confidence            4567899999998  47999998886 5999888843    34557778877765544321 11111  11356899986


Q ss_pred             CCCc--------hhHHHHHHhcccCCEEEEE
Q psy2960         290 CVGG--------NSATNLLRTLVSKGVMVTY  312 (405)
Q Consensus       290 ~~g~--------~~~~~~~~~l~~~G~~v~~  312 (405)
                      ....        ..+....++|+|||.++..
T Consensus       109 ~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~  139 (246)
T d2avna1         109 LGDVLSYVENKDKAFSEIRRVLVPDGLLIAT  139 (246)
T ss_dssp             CSSHHHHCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ecchhhhhhhHHHHHHHHHhhcCcCcEEEEE
Confidence            5431        1234566899999998764

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=94.42  E-value=0.046  Score=41.39  Aligned_cols=91  Identities=12%  Similarity=0.082  Sum_probs=57.6

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe-ChhhHHHHhhhcCCCCCcEEEECCCch
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVGGN  294 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~-~~~d~~~i~~~t~g~g~Dvvld~~g~~  294 (405)
                      +++|.|+ |-+|..+++.+...|.+++++-    ..+++.+.+...|...++ |..+.. +.+..+-...|.++-+++..
T Consensus         2 ~~iIiG~-G~~G~~la~~L~~~g~~vvvid----~d~~~~~~~~~~~~~~~~gd~~~~~-~l~~a~i~~a~~vi~~~~~~   75 (134)
T d2hmva1           2 QFAVIGL-GRFGGSIVKELHRMGHEVLAVD----INEEKVNAYASYATHAVIANATEEN-ELLSLGIRNFEYVIVAIGAN   75 (134)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCCCEEEE----SCHHHHHHTTTTCSEEEECCTTCTT-HHHHHTGGGCSEEEECCCSC
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCeEEEec----CcHHHHHHHHHhCCcceeeecccch-hhhccCCccccEEEEEcCch
Confidence            5788898 9999999999999999998884    335567777777776554 222211 22222223568888888764


Q ss_pred             hHH-H---HHHhcccCCEEEEE
Q psy2960         295 SAT-N---LLRTLVSKGVMVTY  312 (405)
Q Consensus       295 ~~~-~---~~~~l~~~G~~v~~  312 (405)
                      ... .   ..+.+.+..+++..
T Consensus        76 ~~~~~~~~~~~~~~~~~~iiar   97 (134)
T d2hmva1          76 IQASTLTTLLLKELDIPNIWVK   97 (134)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEE
T ss_pred             HHhHHHHHHHHHHcCCCcEEee
Confidence            332 2   22334455565543

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.35  E-value=0.16  Score=39.26  Aligned_cols=96  Identities=18%  Similarity=0.086  Sum_probs=64.0

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe-ChhhHHHHhhhcCCCCCcEEEECCCc
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVGG  293 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~-~~~d~~~i~~~t~g~g~Dvvld~~g~  293 (405)
                      +.|+|.|. |.+|...++.+...|.+++++...++....+.+.+...|...+. |..+.+ +.+..+-...|.++-+++.
T Consensus         4 nHiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~-~L~~a~i~~a~~vi~~~~~   81 (153)
T d1id1a_           4 DHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSS-VLKKAGIDRCRAILALSDN   81 (153)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHH-HHHHHTTTTCSEEEECSSC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchH-HHHHhccccCCEEEEcccc
Confidence            57999999 99999999999999999988876555444555666666776554 333322 3333334568999998887


Q ss_pred             hhHHH----HHHhcccCCEEEEE
Q psy2960         294 NSATN----LLRTLVSKGVMVTY  312 (405)
Q Consensus       294 ~~~~~----~~~~l~~~G~~v~~  312 (405)
                      +....    ..+.+.+.-+++..
T Consensus        82 d~~n~~~~~~~r~~~~~~~iia~  104 (153)
T d1id1a_          82 DADNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             HHHHHHHHHHHHHHTSSSCEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCceEEE
Confidence            54432    23445566666554

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=94.32  E-value=0.079  Score=43.32  Aligned_cols=79  Identities=22%  Similarity=0.215  Sum_probs=55.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      .|.+|+|.|. |.||..+++.+...|+++++.-    ....+......+|++.+ +.+++   .    ...+|+.+=|..
T Consensus        26 ~gk~v~IqG~-G~VG~~~A~~L~~~Gakvvv~d----~d~~~~~~~~~~g~~~~-~~~~~---~----~~~~DI~iPcA~   92 (201)
T d1c1da1          26 DGLTVLVQGL-GAVGGSLASLAAEAGAQLLVAD----TDTERVAHAVALGHTAV-ALEDV---L----STPCDVFAPCAM   92 (201)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEC----SCHHHHHHHHHTTCEEC-CGGGG---G----GCCCSEEEECSC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEec----chHHHHHHHHhhccccc-Ccccc---c----cccceeeecccc
Confidence            7899999998 9999999999999999988663    22445667777887543 33332   1    236798887765


Q ss_pred             chhH-HHHHHhcc
Q psy2960         293 GNSA-TNLLRTLV  304 (405)
Q Consensus       293 ~~~~-~~~~~~l~  304 (405)
                      +..+ ....+.++
T Consensus        93 ~~~I~~~~a~~i~  105 (201)
T d1c1da1          93 GGVITTEVARTLD  105 (201)
T ss_dssp             SCCBCHHHHHHCC
T ss_pred             cccccHHHHhhhh
Confidence            5443 34455554

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=94.29  E-value=0.37  Score=37.47  Aligned_cols=93  Identities=16%  Similarity=0.195  Sum_probs=65.3

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEE
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALN  289 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld  289 (405)
                      -+-.|++++|.|= |-+|...++-++.+|++|+++-.    .+-+.-.+ .+-.-.+...++.        -...|+++-
T Consensus        19 ~~laGk~vvV~GY-G~vGrG~A~~~rg~Ga~V~V~E~----DPi~alqA-~mdGf~v~~~~~a--------~~~aDi~vT   84 (163)
T d1v8ba1          19 FLISGKIVVICGY-GDVGKGCASSMKGLGARVYITEI----DPICAIQA-VMEGFNVVTLDEI--------VDKGDFFIT   84 (163)
T ss_dssp             CCCTTSEEEEECC-SHHHHHHHHHHHHHTCEEEEECS----CHHHHHHH-HTTTCEECCHHHH--------TTTCSEEEE
T ss_pred             ceecCCEEEEecc-cccchhHHHHHHhCCCEEEEEec----CchhhHHH-HhcCCccCchhHc--------cccCcEEEE
Confidence            3468999999999 99999999999999999998842    22221112 2222234332221        134599999


Q ss_pred             CCCchhH--HHHHHhcccCCEEEEEeccC
Q psy2960         290 CVGGNSA--TNLLRTLVSKGVMVTYGGMS  316 (405)
Q Consensus       290 ~~g~~~~--~~~~~~l~~~G~~v~~g~~~  316 (405)
                      ++|+...  .+-++.|+.+..+..+|..+
T Consensus        85 aTGn~~vI~~~h~~~MKdgaIl~N~GHfd  113 (163)
T d1v8ba1          85 CTGNVDVIKLEHLLKMKNNAVVGNIGHFD  113 (163)
T ss_dssp             CCSSSSSBCHHHHTTCCTTCEEEECSSTT
T ss_pred             cCCCCccccHHHHHHhhCCeEEEeccccc
Confidence            9998653  45689999999998888543

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.28  E-value=0.053  Score=42.95  Aligned_cols=94  Identities=12%  Similarity=0.160  Sum_probs=56.9

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeC-h-hhHHHHhhhcCCCCCcEEEECC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFT-E-EELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~-~-~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                      +++|||.|+ |.+|..+++.+...|.+|+++-++.++   ..+....++...+.. . .+.......  -...|.++.++
T Consensus         2 ~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~~---a~~l~~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~i~~~   75 (182)
T d1e5qa1           2 TKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLES---AKKLSAGVQHSTPISLDVNDDAALDAE--VAKHDLVISLI   75 (182)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHHH---HHHHHTTCTTEEEEECCTTCHHHHHHH--HTTSSEEEECS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChHH---HHHHHhcccccccccccccchhhhHhh--hhccceeEeec
Confidence            689999998 999999999998889998777655433   223333444433321 1 111111111  12468888888


Q ss_pred             CchhHHHH-HHhcccCCEEEEEe
Q psy2960         292 GGNSATNL-LRTLVSKGVMVTYG  313 (405)
Q Consensus       292 g~~~~~~~-~~~l~~~G~~v~~g  313 (405)
                      ........ ..++..+-.++.+.
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~   98 (182)
T d1e5qa1          76 PYTFHATVIKSAIRQKKHVVTTS   98 (182)
T ss_dssp             CGGGHHHHHHHHHHHTCEEECSS
T ss_pred             cchhhhHHHHHHHhhccceeecc
Confidence            76555443 45566666666544

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.17  E-value=0.025  Score=41.65  Aligned_cols=71  Identities=18%  Similarity=0.241  Sum_probs=45.6

Q ss_pred             CCCCC-CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe-ChhhHHHHhhhcCCCCCcEE
Q psy2960         210 SLSPG-DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLA  287 (405)
Q Consensus       210 ~~~~g-~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~-~~~d~~~i~~~t~g~g~Dvv  287 (405)
                      .+.|+ .+|.|.|+ |-+|.+.++-|+.+|.++++...+++.      -+..+...++. +++|.+.+.++....++|+|
T Consensus         6 ~~~~~~~kigIlGg-GQL~rMla~aA~~lG~~v~v~d~~~~~------PA~~va~~~i~~~~~d~~~l~~~~~~~~~Dvi   78 (111)
T d1kjqa2           6 ALRPAATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYADA------PAMHVAHRSHVINMLDGDALRRVVELEKPHYI   78 (111)
T ss_dssp             TTSTTCCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTTC------GGGGGSSEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             CCCCCCCEEEEEeC-CHHHHHHHHHHHHCCCEEEEEcCCCCC------chhhcCCeEEECCCCCHHHHHHHHHhhCCceE
Confidence            34555 46999999 999999999999999999998755432      12234344443 44554433332112357887

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.12  E-value=0.48  Score=37.53  Aligned_cols=91  Identities=7%  Similarity=-0.001  Sum_probs=56.9

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCC---cEEeChhhHHHHhhhcCCCCCcEEEECC
Q psy2960         216 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGA---DYVFTEEELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~---~~v~~~~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                      +|.|.|+ |.+|...++..+.. +++++++++....  ...+...+.+.   ..++  ++++++.+   ...+|+|+-|+
T Consensus         3 ki~iIG~-G~~g~~~~~~l~~~~~~~i~ai~d~~~~--~~~~~~~~~~~~~~~~~~--~~~~~ll~---~~~iD~v~I~t   74 (184)
T d1ydwa1           3 RIGVMGC-ADIARKVSRAIHLAPNATISGVASRSLE--KAKAFATANNYPESTKIH--GSYESLLE---DPEIDALYVPL   74 (184)
T ss_dssp             EEEEESC-CTTHHHHHHHHHHCTTEEEEEEECSSHH--HHHHHHHHTTCCTTCEEE--SSHHHHHH---CTTCCEEEECC
T ss_pred             EEEEEcC-CHHHHHHHHHHHhCCCCEEEEEEeCCcc--ccccchhccccccceeec--CcHHHhhh---ccccceeeecc
Confidence            5889998 89999888888776 7788888755332  22344455553   2333  23444222   34689999998


Q ss_pred             CchhH-HHHHHhcccCCEEEEEecc
Q psy2960         292 GGNSA-TNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       292 g~~~~-~~~~~~l~~~G~~v~~g~~  315 (405)
                      ....- ..+..++.. |.=+.+..+
T Consensus        75 p~~~h~~~~~~~l~~-g~~v~~EKP   98 (184)
T d1ydwa1          75 PTSLHVEWAIKAAEK-GKHILLEKP   98 (184)
T ss_dssp             CGGGHHHHHHHHHTT-TCEEEECSS
T ss_pred             cchhhcchhhhhhhc-cceeecccc
Confidence            86544 445666665 555666543

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=94.11  E-value=0.066  Score=43.53  Aligned_cols=86  Identities=16%  Similarity=0.197  Sum_probs=57.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH-HhhhcCCCCCcEEEECC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCV  291 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~Dvvld~~  291 (405)
                      .|.+|.|.|. |.+|...+++++.+|+++++.......     +.....+....   .++++ +..      .|+|.-++
T Consensus        48 ~gktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~-----~~~~~~~~~~~---~~l~~ll~~------sD~i~~~~  112 (193)
T d1mx3a1          48 RGETLGIIGL-GRVGQAVALRAKAFGFNVLFYDPYLSD-----GVERALGLQRV---STLQDLLFH------SDCVTLHC  112 (193)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSCT-----THHHHHTCEEC---SSHHHHHHH------CSEEEECC
T ss_pred             eCceEEEecc-ccccccceeeeeccccceeeccCcccc-----cchhhhccccc---cchhhcccc------CCEEEEee
Confidence            6899999999 999999999999999999988654332     12223333322   23333 332      48887766


Q ss_pred             Cc-hh----H-HHHHHhcccCCEEEEEe
Q psy2960         292 GG-NS----A-TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       292 g~-~~----~-~~~~~~l~~~G~~v~~g  313 (405)
                      .. +.    + ...+..|+++..+|.++
T Consensus       113 plt~~T~~li~~~~l~~mk~~a~lIN~s  140 (193)
T d1mx3a1         113 GLNEHNHHLINDFTVKQMRQGAFLVNTA  140 (193)
T ss_dssp             CCCTTCTTSBSHHHHTTSCTTEEEEECS
T ss_pred             cccccchhhhhHHHHhccCCCCeEEecC
Confidence            52 11    1 24578888888888776

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=94.06  E-value=0.041  Score=49.40  Aligned_cols=33  Identities=18%  Similarity=0.259  Sum_probs=29.4

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecC
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRN  247 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~  247 (405)
                      +.|||+||+|-+|...+..+...|.+|+++.+.
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~   34 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRR   34 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC-
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            578999999999999999999999999998753

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.04  E-value=0.082  Score=41.09  Aligned_cols=86  Identities=14%  Similarity=0.148  Sum_probs=59.4

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCCchh
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNS  295 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~~~  295 (405)
                      +|.+.|+ |-+|.+.+.-....|.++++..++.++   ..+..+++|.....+.++.  +.      ..|+||=|+-...
T Consensus         2 kIg~IG~-G~mG~al~~~l~~~~~~i~v~~r~~~~---~~~l~~~~g~~~~~~~~~~--~~------~~dvIilavkp~~   69 (152)
T d2ahra2           2 KIGIIGV-GKMASAIIKGLKQTPHELIISGSSLER---SKEIAEQLALPYAMSHQDL--ID------QVDLVILGIKPQL   69 (152)
T ss_dssp             EEEEECC-SHHHHHHHHHHTTSSCEEEEECSSHHH---HHHHHHHHTCCBCSSHHHH--HH------TCSEEEECSCGGG
T ss_pred             EEEEEec-cHHHHHHHHHHHhCCCeEEEEcChHHh---HHhhccccceeeechhhhh--hh------ccceeeeecchHh
Confidence            5889999 999998887666678888877655432   2344456776544333332  22      4699999998777


Q ss_pred             HHHHHHhcccCCEEEEEe
Q psy2960         296 ATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       296 ~~~~~~~l~~~G~~v~~g  313 (405)
                      ..+.++.+.++..++.+.
T Consensus        70 ~~~vl~~l~~~~~iis~~   87 (152)
T d2ahra2          70 FETVLKPLHFKQPIISMA   87 (152)
T ss_dssp             HHHHHTTSCCCSCEEECC
T ss_pred             HHHHhhhcccceeEeccc
Confidence            777788888877776654

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.00  E-value=0.065  Score=44.93  Aligned_cols=102  Identities=11%  Similarity=-0.032  Sum_probs=58.5

Q ss_pred             hcCCCCCCEEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEEe--ChhhHHHHhhhcCCCCC
Q psy2960         208 YNSLSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEEELRNISRDASIPKP  284 (405)
Q Consensus       208 ~~~~~~g~~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~--~~~d~~~i~~~t~g~g~  284 (405)
                      ...++||++||=.||  |.|..+..+|+.. +.+|+++--++...+...+.+...+....+  +.++.......  ...+
T Consensus        69 ~l~ikpG~~VLDlGc--GsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~--~~~v  144 (230)
T d1g8sa_          69 VMPIKRDSKILYLGA--SAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANI--VEKV  144 (230)
T ss_dssp             CCCCCTTCEEEEESC--CSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTT--CCCE
T ss_pred             hCCCCCCCEEEEeCE--EcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccc--ccee
Confidence            367999999999999  4688889999875 346777754433323333333333332222  22222211111  2235


Q ss_pred             cEEEECCCch-----hHHHHHHhcccCCEEEEEe
Q psy2960         285 KLALNCVGGN-----SATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       285 Dvvld~~g~~-----~~~~~~~~l~~~G~~v~~g  313 (405)
                      |+++......     .+.++.+.|+|+|+++..-
T Consensus       145 ~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~  178 (230)
T d1g8sa_         145 DVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAI  178 (230)
T ss_dssp             EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeeccccchHHHHHHHHHHHHhcccCceEEEEe
Confidence            6666655421     2344568899999988753

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=93.95  E-value=0.063  Score=43.82  Aligned_cols=84  Identities=20%  Similarity=0.208  Sum_probs=57.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH-HhhhcCCCCCcEEEECC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCV  291 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~Dvvld~~  291 (405)
                      .|.+|.|.|. |.+|...+++++.+|++|++.......     . ....+.    ...++.+ +.+      .|+|+.++
T Consensus        42 ~gk~vgIiG~-G~IG~~va~~l~~fg~~V~~~d~~~~~-----~-~~~~~~----~~~~l~~~l~~------sDii~~~~  104 (197)
T d1j4aa1          42 RDQVVGVVGT-GHIGQVFMQIMEGFGAKVITYDIFRNP-----E-LEKKGY----YVDSLDDLYKQ------ADVISLHV  104 (197)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCH-----H-HHHTTC----BCSCHHHHHHH------CSEEEECS
T ss_pred             cCCeEEEecc-cccchhHHHhHhhhcccccccCccccc-----c-ccccee----eeccccccccc------cccccccC
Confidence            4899999999 999999999999999999887543321     1 111121    1223444 333      49988877


Q ss_pred             Cc-hh----H-HHHHHhcccCCEEEEEe
Q psy2960         292 GG-NS----A-TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       292 g~-~~----~-~~~~~~l~~~G~~v~~g  313 (405)
                      .. +.    + ...++.|+++..+|.++
T Consensus       105 plt~~T~~li~~~~l~~mk~~a~lIN~s  132 (197)
T d1j4aa1         105 PDVPANVHMINDESIAKMKQDVVIVNVS  132 (197)
T ss_dssp             CCCGGGTTCBSHHHHHHSCTTEEEEECS
T ss_pred             CccccccccccHHHHhhhCCccEEEecC
Confidence            52 21    1 34688999998888876

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.89  E-value=0.19  Score=38.03  Aligned_cols=76  Identities=13%  Similarity=0.157  Sum_probs=53.1

Q ss_pred             EEEEeCCCcHHHHHHHHHHHH-cCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCCch
Q psy2960         216 VVIQNGANSACGQNVIQIARH-WGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGN  294 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~-~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~~  294 (405)
                      +|.|.|++|-+|++.++.... -++++.+..+..+..                     ....    ..++|+|||.+-.+
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~~~---------------------~~~~----~~~~DvvIDFS~p~   55 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGDPL---------------------SLLT----DGNTEVVIDFTHPD   55 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTCCT---------------------HHHH----TTTCSEEEECCCTT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCch---------------------hhhc----cccCCEEEEcccHH
Confidence            689999999999998887655 577887776433210                     0010    23578999988888


Q ss_pred             hHHHHHHhcccCCEEEEEeccC
Q psy2960         295 SATNLLRTLVSKGVMVTYGGMS  316 (405)
Q Consensus       295 ~~~~~~~~l~~~G~~v~~g~~~  316 (405)
                      .+...++.+...|.=+.+|...
T Consensus        56 ~~~~~~~~~~~~~~~~ViGTTG   77 (135)
T d1yl7a1          56 VVMGNLEFLIDNGIHAVVGTTG   77 (135)
T ss_dssp             THHHHHHHHHHTTCEEEECCCC
T ss_pred             HHHHHHHHHHhcCCCEEEeccc
Confidence            8877777776777666777443

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=93.71  E-value=0.036  Score=46.52  Aligned_cols=35  Identities=14%  Similarity=0.268  Sum_probs=31.6

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD  249 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~  249 (405)
                      +++||.||++|+|.+.++.+...|++|+.+.++++
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            68999999999999999999999999999876654

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.67  E-value=0.037  Score=48.93  Aligned_cols=33  Identities=12%  Similarity=0.267  Sum_probs=30.5

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecC
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRN  247 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~  247 (405)
                      +++||+||+|-+|...+..+...|.+|+++.+.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECC
Confidence            579999999999999999999999999999864

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.65  E-value=0.052  Score=42.11  Aligned_cols=32  Identities=13%  Similarity=0.080  Sum_probs=29.8

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEe
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIV  245 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~  245 (405)
                      .|.+|||.|| |.+|..-+..+...|++|++++
T Consensus        12 ~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVva   43 (150)
T d1kyqa1          12 KDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVS   43 (150)
T ss_dssp             TTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEe
Confidence            6899999999 9999999999999999998886

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.60  E-value=0.12  Score=41.49  Aligned_cols=85  Identities=16%  Similarity=0.152  Sum_probs=58.7

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH-HhhhcCCCCCcEEEECC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCV  291 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~Dvvld~~  291 (405)
                      .|.++.|.|. |.+|...+++++.+|++|++..+...+     +.....+.. ..   ++++ +.+      .|+|.-++
T Consensus        43 ~~k~vgiiG~-G~IG~~va~~~~~fg~~v~~~d~~~~~-----~~~~~~~~~-~~---~l~ell~~------sDiv~~~~  106 (184)
T d1ygya1          43 FGKTVGVVGL-GRIGQLVAQRIAAFGAYVVAYDPYVSP-----ARAAQLGIE-LL---SLDDLLAR------ADFISVHL  106 (184)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSCH-----HHHHHHTCE-EC---CHHHHHHH------CSEEEECC
T ss_pred             cceeeeeccc-cchhHHHHHHhhhccceEEeecCCCCh-----hHHhhcCce-ec---cHHHHHhh------CCEEEEcC
Confidence            5889999999 999999999999999999988654332     222233332 22   2334 332      48988877


Q ss_pred             Cc-hh----H-HHHHHhcccCCEEEEEe
Q psy2960         292 GG-NS----A-TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       292 g~-~~----~-~~~~~~l~~~G~~v~~g  313 (405)
                      .- +.    + ...++.|+++..+|-++
T Consensus       107 Plt~~T~~lin~~~l~~mk~~a~lIN~s  134 (184)
T d1ygya1         107 PKTPETAGLIDKEALAKTKPGVIIVNAA  134 (184)
T ss_dssp             CCSTTTTTCBCHHHHTTSCTTEEEEECS
T ss_pred             CCCchhhhhhhHHHHhhhCCCceEEEec
Confidence            52 22    1 34678899988888876

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=93.48  E-value=0.07  Score=42.80  Aligned_cols=36  Identities=14%  Similarity=0.024  Sum_probs=31.4

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecC
Q psy2960         211 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN  247 (405)
Q Consensus       211 ~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~  247 (405)
                      ...+++|+|.|+ |+.|+.|+..+...|.+|...-..
T Consensus        40 ~~~~k~V~IIGa-GPAGL~AA~~la~~G~~Vtl~E~~   75 (179)
T d1ps9a3          40 AVQKKNLAVVGA-GPAGLAFAINAAARGHQVTLFDAH   75 (179)
T ss_dssp             CSSCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCCCcEEEEECc-cHHHHHHHHHHHhhccceEEEecc
Confidence            456789999999 999999999999999999887543

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.38  E-value=0.072  Score=46.24  Aligned_cols=99  Identities=9%  Similarity=0.025  Sum_probs=56.0

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE-----EeChhhHHH-HhhhcCCCC
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY-----VFTEEELRN-ISRDASIPK  283 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~-----v~~~~d~~~-i~~~t~g~g  283 (405)
                      +.+++.+||=.|+  |.|..++.+|+. |++|+++--|++..+...+.....+...     .+..-++.. -.......+
T Consensus        53 ~~~~~~~vLD~Gc--G~G~~~~~la~~-g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (292)
T d1xvaa_          53 RQHGCHRVLDVAC--GTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDG  129 (292)
T ss_dssp             HHTTCCEEEESSC--TTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTC
T ss_pred             hhcCCCEEEEecC--CCcHHHHHHHHc-CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCC
Confidence            3456789999998  568888999875 8998887544333222222222222211     111111111 112222457


Q ss_pred             CcEEEECCCc---------------hhHHHHHHhcccCCEEEE
Q psy2960         284 PKLALNCVGG---------------NSATNLLRTLVSKGVMVT  311 (405)
Q Consensus       284 ~Dvvld~~g~---------------~~~~~~~~~l~~~G~~v~  311 (405)
                      +|.|+.....               ..+....+.|+|||.++.
T Consensus       130 fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~  172 (292)
T d1xvaa_         130 FDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI  172 (292)
T ss_dssp             EEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             ceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEE
Confidence            8998864321               134556789999999876

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.34  E-value=0.099  Score=42.38  Aligned_cols=98  Identities=17%  Similarity=0.181  Sum_probs=59.3

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCCcEEE
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKPKLAL  288 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~Dvvl  288 (405)
                      .+++| +||=.|+  |.|..+..+++ .|++++++--+++..+...+.+.+.|.+.+ +...|+..   ..-...+|+|+
T Consensus        28 ~~~~g-rvLDiGc--G~G~~~~~la~-~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~---~~~~~~fD~I~  100 (198)
T d2i6ga1          28 VVAPG-RTLDLGC--GNGRNSLYLAA-NGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNT---LTFDGEYDFIL  100 (198)
T ss_dssp             TSCSC-EEEEETC--TTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTT---CCCCCCEEEEE
T ss_pred             cCCCC-cEEEECC--CCCHHHHHHHH-HhhhhccccCcHHHHHHHHHHhhhccccchhhhheeccc---ccccccccEEE
Confidence            34555 8999998  47888888886 589988875444433333444556666532 22222221   11134689998


Q ss_pred             ECCCc-----h----hHHHHHHhcccCCEEEEEec
Q psy2960         289 NCVGG-----N----SATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       289 d~~g~-----~----~~~~~~~~l~~~G~~v~~g~  314 (405)
                      ...--     +    .+..+.++|+|+|.++....
T Consensus       101 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~  135 (198)
T d2i6ga1         101 STVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAA  135 (198)
T ss_dssp             EESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            63321     1    22345678999999887653

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=93.34  E-value=0.61  Score=36.84  Aligned_cols=139  Identities=10%  Similarity=0.075  Sum_probs=76.5

Q ss_pred             EEEEeCCCcHHHHH-HHHHHHHcC--CcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         216 VVIQNGANSACGQN-VIQIARHWG--LKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       216 ~VLI~ga~G~vG~~-aiqla~~~G--~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      +|.|.|+ |.+|.- .+...+..+  .++++++++..  +........++...+++  +++++.+   ...+|+|+-|+.
T Consensus         5 rigiIG~-G~~g~~~h~~~l~~~~~~~~i~~v~d~~~--~~~~~~~~~~~~~~~~~--~~~ell~---~~~id~v~I~tp   76 (181)
T d1zh8a1           5 RLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTR--SHAEEFAKMVGNPAVFD--SYEELLE---SGLVDAVDLTLP   76 (181)
T ss_dssp             EEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSH--HHHHHHHHHHSSCEEES--CHHHHHH---SSCCSEEEECCC
T ss_pred             EEEEEcC-CHHHHHHHHHHHHhCCCCeEEEEEEeccH--hhhhhhhccccccceee--eeecccc---ccccceeecccc
Confidence            6899998 889864 566666554  46777775543  22334556677766653  3444222   346899999888


Q ss_pred             chhHHH-HHHhcccCCEEEEEeccCCCCcc-c-Cccccc-ccCeEEE-EEecchhhhhhccHHHHHHHHHHHHHHHHcCc
Q psy2960         293 GNSATN-LLRTLVSKGVMVTYGGMSREPVQ-I-PTSAFI-FKDITLR-GHWMTRWQKENKESAERKSMMNELTEMMRTGK  367 (405)
Q Consensus       293 ~~~~~~-~~~~l~~~G~~v~~g~~~~~~~~-~-~~~~~~-~k~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  367 (405)
                      ...-.. +..++.. |.-+.+..+...+.. . ....+. .++..+. ++.. .+       ......+.++.+++++|+
T Consensus        77 ~~~h~~~~~~al~~-gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~~~v~~~~-R~-------~~~~~~~~~~~~~i~~G~  147 (181)
T d1zh8a1          77 VELNLPFIEKALRK-GVHVICEKPISTDVETGKKVVELSEKSEKTVYIAENF-RE-------NSYQKEFEDFYQVVAEGK  147 (181)
T ss_dssp             GGGHHHHHHHHHHT-TCEEEEESSSSSSHHHHHHHHHHHHHCSSCEEEECGG-GC-------CHHHHHHHHHHHHHHSCC
T ss_pred             cccccccccccccc-chhhhcCCCCcCCHHHHHHHHHHHHHhCCeEEEEeec-cc-------cccCHHHHHHHHHHHCCC
Confidence            765444 4455554 566777654322111 0 011121 1233332 2221 11       112445778889999998


Q ss_pred             ccCC
Q psy2960         368 LAAP  371 (405)
Q Consensus       368 l~~~  371 (405)
                      +...
T Consensus       148 ig~i  151 (181)
T d1zh8a1         148 PNDL  151 (181)
T ss_dssp             CCSS
T ss_pred             CccC
Confidence            7653

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=93.22  E-value=0.098  Score=44.79  Aligned_cols=78  Identities=18%  Similarity=0.265  Sum_probs=49.6

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcch--HHH---HHHHHHcCCcEEe-ChhhHHHHhhhcCCCCCcEEE
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDI--DKL---KSYLKSLGADYVF-TEEELRNISRDASIPKPKLAL  288 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~--~~~---~~~~~~lg~~~v~-~~~d~~~i~~~t~g~g~Dvvl  288 (405)
                      .+|||.||+|-+|...+..+...|.+|++++++....  ..+   .......+.+.+. |..+.....+..  .+.|.++
T Consensus         4 kKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~vi   81 (307)
T d1qyca_           4 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAV--KNVDVVI   81 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHH--HTCSEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhh--hhceeee
Confidence            5799999999999999999999999999998764432  112   2233334454442 322322222221  2568888


Q ss_pred             ECCCch
Q psy2960         289 NCVGGN  294 (405)
Q Consensus       289 d~~g~~  294 (405)
                      .+.+..
T Consensus        82 ~~~~~~   87 (307)
T d1qyca_          82 STVGSL   87 (307)
T ss_dssp             ECCCGG
T ss_pred             eccccc
Confidence            887753

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=93.12  E-value=0.14  Score=40.24  Aligned_cols=95  Identities=17%  Similarity=0.129  Sum_probs=65.1

Q ss_pred             ccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh
Q psy2960         192 SGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE  271 (405)
Q Consensus       192 a~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d  271 (405)
                      ..+||.....+..|....---.|++|+|.|.+.-+|.-...++...||+|+.+- +...                    +
T Consensus        15 ~~~PcTp~aI~~lL~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h-~~t~--------------------~   73 (166)
T d1b0aa1          15 RLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTH-RFTK--------------------N   73 (166)
T ss_dssp             SSCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEEC-SSCS--------------------C
T ss_pred             CCCCchHHHHHHHHHHcCcccccceEEEEeccccccHHHHHHHHHhhccccccc-cccc--------------------h
Confidence            456666666666665543334799999999999999999999999999976553 2221                    1


Q ss_pred             HHH-HhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEec
Q psy2960         272 LRN-ISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       272 ~~~-i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~  314 (405)
                      ... ++      ..|+++-++|.+.+.. -+.++++-.++.+|.
T Consensus        74 l~~~~~------~ADivI~a~G~p~~i~-~~~vk~g~vvIDvGi  110 (166)
T d1b0aa1          74 LRHHVE------NADLLIVAVGKPGFIP-GDWIKEGAIVIDVGI  110 (166)
T ss_dssp             HHHHHH------HCSEEEECSCCTTCBC-TTTSCTTCEEEECCC
T ss_pred             hHHHHh------hhhHhhhhccCccccc-ccccCCCcEEEecCc
Confidence            111 22      2488998888764421 246778888888874

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.09  E-value=0.62  Score=36.67  Aligned_cols=96  Identities=19%  Similarity=0.174  Sum_probs=62.5

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEEeChhh----HHH--------HhhhcCCC
Q psy2960         216 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE----LRN--------ISRDASIP  282 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d----~~~--------i~~~t~g~  282 (405)
                      +|.|.|- |-+|...+..+... ..+++++.....  .+....+...+.+......+    +..        +...  -.
T Consensus         4 rIaINGf-GRIGR~v~Ral~~~~dieiVaINd~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~   78 (172)
T d2czca2           4 KVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKP--DFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDL--LE   78 (172)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSC--SHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHH--HT
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCC--hHHHHHhhhcCceeecccccceeeecccCccccchhhhh--hc
Confidence            6899998 99999988877655 467777765432  23345566677665442211    111        1111  13


Q ss_pred             CCcEEEECCCchhHH-HHHHhcccCCEEEEEeccC
Q psy2960         283 KPKLALNCVGGNSAT-NLLRTLVSKGVMVTYGGMS  316 (405)
Q Consensus       283 g~Dvvld~~g~~~~~-~~~~~l~~~G~~v~~g~~~  316 (405)
                      ++|+|+||+|.-... .+-..+..|-+.|.++...
T Consensus        79 ~vDvViEcTG~f~~~~~~~~hl~~G~k~Vi~s~~~  113 (172)
T d2czca2          79 KVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGEK  113 (172)
T ss_dssp             TCSEEEECCSTTHHHHHHHHHHHHTCEEEECTTSC
T ss_pred             cCCEEEECCCCCCCHHHHHHHHHcCCCEEEECCCC
Confidence            799999999976654 4457788888999888644

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=92.99  E-value=0.59  Score=35.98  Aligned_cols=142  Identities=15%  Similarity=0.187  Sum_probs=75.8

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCC--cEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH-HhhhcCCCCCcEEEEC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNC  290 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~--~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~Dvvld~  290 (405)
                      |-+|.|.||+|-+|.-.++++.....  ..+....+.+          ..|-..-........ ..........|+++-+
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~----------s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~   70 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASAR----------SAGKSLKFKDQDITIEETTETAFEGVDIALFS   70 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGG----------GTTCEEEETTEEEEEEECCTTTTTTCSEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccc----------cccccccccCCcccccccchhhhhhhhhhhhc
Confidence            45899999999999999999987743  2233332321          222211111111000 0000113467999999


Q ss_pred             CCchhHHHH-HHhcccCCEEEEEeccCCCCcccCc--ccc----cccCeEEEEEecchhhhhhccHHHHHHHHHHHHHHH
Q psy2960         291 VGGNSATNL-LRTLVSKGVMVTYGGMSREPVQIPT--SAF----IFKDITLRGHWMTRWQKENKESAERKSMMNELTEMM  363 (405)
Q Consensus       291 ~g~~~~~~~-~~~l~~~G~~v~~g~~~~~~~~~~~--~~~----~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (405)
                      .+....... .+...++-+++..+.........+.  .++    +.+...+...         |  .-....+.-+.-++
T Consensus        71 ~~~~~s~~~~~~~~~~~~~VIDlSsdfR~~~~~~~~~pe~n~~~~~~~~~iIAn---------P--gC~tt~i~~l~PL~  139 (154)
T d2gz1a1          71 AGSSTSAKYAPYAVKAGVVVVDNTSYFRQNPDVPLVVPEVNAHALDAHNGIIAC---------P--NAAWNSVQIAETLH  139 (154)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEECSSTTTTCTTSCBCCHHHHGGGGGGCCSEEEC---------C--CTHHHHHHHHHHHH
T ss_pred             cCccchhhHHhhhccccceehhcChhhhccCCcccccchhhHHHhcCcCceEEC---------C--CCHHHHHHHHHHHH
Confidence            998766654 4677788899998865433222221  111    1122122211         1  11122233467889


Q ss_pred             HcCcccCCcceee
Q psy2960         364 RTGKLAAPAHKFV  376 (405)
Q Consensus       364 ~~g~l~~~~~~~~  376 (405)
                      ++|.+++.....|
T Consensus       140 ~~~lik~~~~~~~  152 (154)
T d2gz1a1         140 ERGLVRPTAELKF  152 (154)
T ss_dssp             HTTCCSCCSSCCS
T ss_pred             HhcCCCccceeee
Confidence            9999998754444

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.98  E-value=0.067  Score=42.86  Aligned_cols=45  Identities=11%  Similarity=0.107  Sum_probs=36.0

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS  260 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~  260 (405)
                      +|.|.||+|++|.+.++.+...|++|+...+++++.+...+....
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~   46 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRR   46 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh
Confidence            588998889999999999999999999998876655544444443

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.98  E-value=0.038  Score=48.58  Aligned_cols=32  Identities=9%  Similarity=0.107  Sum_probs=29.1

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEec
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVR  246 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~  246 (405)
                      ++|||.||+|-+|...+..+...|.+|+++.+
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            58999999999999999999889999999864

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=92.97  E-value=0.14  Score=45.33  Aligned_cols=75  Identities=13%  Similarity=0.087  Sum_probs=48.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc-CCcEEe-ChhhHHH-HhhhcCCCCCcEEEE
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-GADYVF-TEEELRN-ISRDASIPKPKLALN  289 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l-g~~~v~-~~~d~~~-i~~~t~g~g~Dvvld  289 (405)
                      +-++|||.||+|.+|...+..+...|.+|++++++.+.. . ...+... |++.+. |..|... +....  .+.|.++.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~-~-~~~~~~~~~v~~~~gD~~d~~~~~~~a~--~~~~~~~~   77 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL-I-AEELQAIPNVTLFQGPLLNNVPLMDTLF--EGAHLAFI   77 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH-H-HHHHHTSTTEEEEESCCTTCHHHHHHHH--TTCSEEEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchh-h-hhhhcccCCCEEEEeeCCCcHHHHHHHh--cCCceEEe
Confidence            457899999999999999999999999999999876542 1 2233333 444332 3223222 33332  35677665


Q ss_pred             CC
Q psy2960         290 CV  291 (405)
Q Consensus       290 ~~  291 (405)
                      ..
T Consensus        78 ~~   79 (350)
T d1xgka_          78 NT   79 (350)
T ss_dssp             CC
T ss_pred             ec
Confidence            44

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=92.97  E-value=0.092  Score=42.15  Aligned_cols=82  Identities=18%  Similarity=0.209  Sum_probs=57.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      .|++|.|.|. |.+|...+++++.+|++|++..++..+           +.....  .+++++.     ...|+|+.++.
T Consensus        41 ~gk~vgIiG~-G~IG~~va~~l~~~g~~v~~~d~~~~~-----------~~~~~~--~~l~ell-----~~sDiv~~~~p  101 (181)
T d1qp8a1          41 QGEKVAVLGL-GEIGTRVGKILAALGAQVRGFSRTPKE-----------GPWRFT--NSLEEAL-----REARAAVCALP  101 (181)
T ss_dssp             TTCEEEEESC-STHHHHHHHHHHHTTCEEEEECSSCCC-----------SSSCCB--SCSHHHH-----TTCSEEEECCC
T ss_pred             cCceEEEecc-ccccccceeeeeccccccccccccccc-----------cceeee--echhhhh-----hccchhhcccc
Confidence            5899999999 999999999999999999988644321           111111  2233321     24599888775


Q ss_pred             c-hh----H-HHHHHhcccCCEEEEEe
Q psy2960         293 G-NS----A-TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       293 ~-~~----~-~~~~~~l~~~G~~v~~g  313 (405)
                      - +.    + ...+..|+++..+|.++
T Consensus       102 l~~~t~~li~~~~l~~mk~~ailIN~~  128 (181)
T d1qp8a1         102 LNKHTRGLVKYQHLALMAEDAVFVNVG  128 (181)
T ss_dssp             CSTTTTTCBCHHHHTTSCTTCEEEECS
T ss_pred             cccccccccccceeeeccccceEEecc
Confidence            3 11    1 35688999999999887

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=92.95  E-value=0.33  Score=37.72  Aligned_cols=94  Identities=14%  Similarity=0.110  Sum_probs=57.2

Q ss_pred             CEEEEeCCCcHHHH-HHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEEeCh-hhHHHHhhhcCCCCCcEEEECC
Q psy2960         215 DVVIQNGANSACGQ-NVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTE-EELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       215 ~~VLI~ga~G~vG~-~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~-~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                      =+|.|.|+ |++|. ..+++.+.. ..+++++++.+.. .....++++.|....... +++.+   .....++|+||+++
T Consensus         5 irvaIIGa-G~ig~~~~~~~l~~~~~~el~avas~~~~-~~~~~~a~~~~i~~~~~~~d~l~~---~~~~~~iDiVf~AT   79 (157)
T d1nvmb1           5 LKVAIIGS-GNIGTDLMIKVLRNAKYLEMGAMVGIDAA-SDGLARAQRMGVTTTYAGVEGLIK---LPEFADIDFVFDAT   79 (157)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHHCSSEEEEEEECSCTT-CHHHHHHHHTTCCEESSHHHHHHH---SGGGGGEEEEEECS
T ss_pred             cEEEEEcC-cHHHHHHHHHHHhhCCcceEEEEEecchh-ccchhhhhhcCCcccccceeeeee---cccccccCEEEEcC
Confidence            36899995 99987 567787765 5577888765432 233567778887655432 22222   11124689999998


Q ss_pred             Cc-hhHHHH--HHhcccCCEEEEEe
Q psy2960         292 GG-NSATNL--LRTLVSKGVMVTYG  313 (405)
Q Consensus       292 g~-~~~~~~--~~~l~~~G~~v~~g  313 (405)
                      .. .+....  .+.+..|-.++...
T Consensus        80 pag~h~~~~~~~~aa~~G~~VID~s  104 (157)
T d1nvmb1          80 SASAHVQNEALLRQAKPGIRLIDLT  104 (157)
T ss_dssp             CHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             CchhHHHhHHHHHHHHcCCEEEEcc
Confidence            75 344433  44455555565544

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.93  E-value=0.085  Score=46.77  Aligned_cols=78  Identities=10%  Similarity=0.105  Sum_probs=47.3

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEec------CCcchHHHHHHHHHc---CCcEE-eChhhHHHHhhhcCCCCC
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVR------NRDDIDKLKSYLKSL---GADYV-FTEEELRNISRDASIPKP  284 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~------~~~~~~~~~~~~~~l---g~~~v-~~~~d~~~i~~~t~g~g~  284 (405)
                      ++|||+||+|-+|...+..+...|.+|+++.+      +........+....+   ....+ .|-.|.+.+.+......+
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~   82 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYSF   82 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCCE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeecccccccccccccccc
Confidence            68999999999999999999999999998742      111112223333222   22222 233443333333334567


Q ss_pred             cEEEECCC
Q psy2960         285 KLALNCVG  292 (405)
Q Consensus       285 Dvvld~~g  292 (405)
                      |+++.+.+
T Consensus        83 ~~i~h~Aa   90 (346)
T d1ek6a_          83 MAVIHFAG   90 (346)
T ss_dssp             EEEEECCS
T ss_pred             cccccccc
Confidence            88888775

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.88  E-value=0.38  Score=37.60  Aligned_cols=88  Identities=17%  Similarity=0.061  Sum_probs=57.1

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCC--cEEEEecCCcchHHHHHHHHHcCC-cEEeChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLGA-DYVFTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~--~v~~~~~~~~~~~~~~~~~~~lg~-~~v~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      +|+|.|+ |-+|...+.-++..|.  ++++..    ..++.++.+++.|. +.+....+...      ....|+|+-|+.
T Consensus         3 ~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D----~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~dlIila~p   71 (171)
T d2g5ca2           3 NVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYD----INPESISKAVDLGIIDEGTTSIAKVE------DFSPDFVMLSSP   71 (171)
T ss_dssp             EEEEESC-SHHHHHHHHHHHHTTCCSEEEEEC----SCHHHHHHHHHTTSCSEEESCGGGGG------GTCCSEEEECSC
T ss_pred             EEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEE----CChHHHHHHHHhhcchhhhhhhhhhh------ccccccccccCC
Confidence            6999998 9999999988888886  555553    33455777888875 44443322111      124688888887


Q ss_pred             chhHHH----HHHhcccCCEEEEEec
Q psy2960         293 GNSATN----LLRTLVSKGVMVTYGG  314 (405)
Q Consensus       293 ~~~~~~----~~~~l~~~G~~v~~g~  314 (405)
                      ......    ....+.++-.++.++.
T Consensus        72 ~~~~~~vl~~l~~~~~~~~ii~d~~s   97 (171)
T d2g5ca2          72 VRTFREIAKKLSYILSEDATVTDQGS   97 (171)
T ss_dssp             HHHHHHHHHHHHHHSCTTCEEEECCS
T ss_pred             chhhhhhhhhhhcccccccccccccc
Confidence            654433    2355666667766664

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.87  E-value=0.11  Score=45.44  Aligned_cols=34  Identities=15%  Similarity=0.255  Sum_probs=30.5

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      ++|||.||+|-+|...+..+...|.+|+++.+..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            4899999999999999999988899999998643

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=92.83  E-value=0.094  Score=42.81  Aligned_cols=84  Identities=14%  Similarity=0.145  Sum_probs=56.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      .|.+|.|.|. |.+|...+++++.+|++|++........        ....   +...+++++.+     ..|+|.-++.
T Consensus        44 ~~ktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~--------~~~~---~~~~~l~~l~~-----~~D~v~~~~p  106 (199)
T d1dxya1          44 GQQTVGVMGT-GHIGQVAIKLFKGFGAKVIAYDPYPMKG--------DHPD---FDYVSLEDLFK-----QSDVIDLHVP  106 (199)
T ss_dssp             GGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSS--------CCTT---CEECCHHHHHH-----HCSEEEECCC
T ss_pred             cceeeeeeec-ccccccccccccccceeeeccCCccchh--------hhcc---hhHHHHHHHHH-----hcccceeeec
Confidence            4789999999 9999999999999999999886433210        0001   11223444222     2488887764


Q ss_pred             c-hhH-----HHHHHhcccCCEEEEEe
Q psy2960         293 G-NSA-----TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       293 ~-~~~-----~~~~~~l~~~G~~v~~g  313 (405)
                      . +..     ...+..|+++..+|-++
T Consensus       107 lt~~T~~li~~~~l~~mk~~a~lIN~a  133 (199)
T d1dxya1         107 GIEQNTHIINEAAFNLMKPGAIVINTA  133 (199)
T ss_dssp             CCGGGTTSBCHHHHHHSCTTEEEEECS
T ss_pred             ccccccccccHHHhhccCCceEEEecc
Confidence            2 221     34688999999888876

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=92.71  E-value=0.34  Score=35.49  Aligned_cols=40  Identities=23%  Similarity=0.250  Sum_probs=34.7

Q ss_pred             hcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         208 YNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       208 ~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      .....++++|+|.|+ |.+|+=.++.++.+|.++..+.+.+
T Consensus        16 ~l~~~~~~~vvVvGg-G~ig~E~A~~l~~~g~~vt~i~~~~   55 (121)
T d1mo9a2          16 ELDYEPGSTVVVVGG-SKTAVEYGCFFNATGRRTVMLVRTE   55 (121)
T ss_dssp             HCCSCCCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             HHhhCCCCEEEEECC-CHHHHHHHHHHHhcchhheEeeccc
Confidence            356778999999999 9999999999999999998887553

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.70  E-value=0.15  Score=43.36  Aligned_cols=97  Identities=13%  Similarity=0.053  Sum_probs=60.6

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc---EEeChhhHHHHhhhcCCCCCcE
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD---YVFTEEELRNISRDASIPKPKL  286 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~---~v~~~~d~~~i~~~t~g~g~Dv  286 (405)
                      .+++|++||-.+|  |+|..++.+|+.-+++|+++--+++..+...+.++..|.+   .++.. |   ..+......+|.
T Consensus       104 ~~~~g~~VlD~~a--G~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~-D---~~~~~~~~~~D~  177 (260)
T d2frna1         104 VAKPDELVVDMFA--GIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM-D---NRDFPGENIADR  177 (260)
T ss_dssp             HCCTTCEEEETTC--TTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS-C---TTTCCCCSCEEE
T ss_pred             hcCCccEEEECcc--eEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEc-c---hHHhccCCCCCE
Confidence            4689999999998  6788888888875568777755544444444555555642   22322 2   112222345786


Q ss_pred             EE-ECC--CchhHHHHHHhcccCCEEEEE
Q psy2960         287 AL-NCV--GGNSATNLLRTLVSKGVMVTY  312 (405)
Q Consensus       287 vl-d~~--g~~~~~~~~~~l~~~G~~v~~  312 (405)
                      |+ +-.  +.+.+..+++.+++||.+...
T Consensus       178 Ii~~~p~~~~~~l~~a~~~l~~gG~lh~~  206 (260)
T d2frna1         178 ILMGYVVRTHEFIPKALSIAKDGAIIHYH  206 (260)
T ss_dssp             EEECCCSSGGGGHHHHHHHEEEEEEEEEE
T ss_pred             EEECCCCchHHHHHHHHhhcCCCCEEEEE
Confidence            55 432  235566789999999877544

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=92.65  E-value=0.069  Score=45.20  Aligned_cols=34  Identities=12%  Similarity=0.270  Sum_probs=30.0

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      +.|||.||++|+|.+.++.+...|++|+.+.+++
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            3589999999999999999999999998887654

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.62  E-value=0.22  Score=43.96  Aligned_cols=39  Identities=23%  Similarity=0.333  Sum_probs=32.3

Q ss_pred             HHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEe
Q psy2960         205 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIV  245 (405)
Q Consensus       205 l~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~  245 (405)
                      +.+..+++++++||=.|+  |.|..+.++|+..|+. ++++-
T Consensus       143 ~~~~~~l~~~~~vlD~Gc--G~G~~~~~~a~~~~~~~~~Gid  182 (328)
T d1nw3a_         143 MIDEIKMTDDDLFVDLGS--GVGQVVLQVAAATNCKHHYGVE  182 (328)
T ss_dssp             HHHHSCCCTTCEEEEETC--TTSHHHHHHHHHCCCSEEEEEE
T ss_pred             HHHHcCCCCCCEEEEcCC--CCCHHHHHHHHHhCCCeEEEEe
Confidence            345589999999999998  7899999999999985 66664

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=92.61  E-value=0.74  Score=36.04  Aligned_cols=95  Identities=14%  Similarity=0.104  Sum_probs=59.8

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC-------cEE-------eC--------hhhHH
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA-------DYV-------FT--------EEELR  273 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~-------~~v-------~~--------~~d~~  273 (405)
                      +|.|.|- |-+|.++...+...+.+++++-.+....+. +..+.+...       +.-       ++        .++..
T Consensus         2 kIgINGf-GRIGR~~~R~~~~~~~~ivaINd~~~~~~~-~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p~   79 (169)
T d1dssg1           2 KIGINGF-GRIGRLVLRAALEMGAQVVAVNDPFIALEY-MVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPE   79 (169)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTCCEEEEECTTSCHHH-HHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             eEEEECC-cHHHHHHHHHHHhCCCcEEEECCCCcCHHH-HHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCChH
Confidence            6889998 999999999998889988888754323233 333333321       111       11        11122


Q ss_pred             H--HhhhcCCCCCcEEEECCCchhHH-HHHHhcccCCEEEEEeccC
Q psy2960         274 N--ISRDASIPKPKLALNCVGGNSAT-NLLRTLVSKGVMVTYGGMS  316 (405)
Q Consensus       274 ~--i~~~t~g~g~Dvvld~~g~~~~~-~~~~~l~~~G~~v~~g~~~  316 (405)
                      +  ..    ..++|+||||+|.-... .+...+..+-+-|.+..+.
T Consensus        80 ~i~W~----~~gvD~ViEcTG~f~~~~~~~~hl~~gakkViisaP~  121 (169)
T d1dssg1          80 NIPWS----KAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAPS  121 (169)
T ss_dssp             GCCHH----HHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCC
T ss_pred             HCCcc----ccCCCEEEecCceEcCHHHHHHHHhcCCceEeecCCc
Confidence            2  12    23799999999975544 4567788777777776543

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.55  E-value=0.35  Score=38.84  Aligned_cols=102  Identities=18%  Similarity=0.098  Sum_probs=58.2

Q ss_pred             HHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc--EE-eChhhHHHHhhhcCC
Q psy2960         205 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--YV-FTEEELRNISRDASI  281 (405)
Q Consensus       205 l~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~--~v-~~~~d~~~i~~~t~g  281 (405)
                      |.+...+.++++||=.|+  |.|..++.+|+ .+.+++++--+....+...+.+...+..  .+ +...|..   +....
T Consensus        44 Li~~l~~~~~~~VLDiGc--G~G~~~~~la~-~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~---~~~~~  117 (194)
T d1dusa_          44 LVENVVVDKDDDILDLGC--GYGVIGIALAD-EVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLY---ENVKD  117 (194)
T ss_dssp             HHHHCCCCTTCEEEEETC--TTSHHHHHHGG-GSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTT---TTCTT
T ss_pred             HHHhCCcCCCCeEEEEee--cCChhHHHHHh-hccccceeeeccccchhHHHHHHHhCCccceEEEEEcchh---hhhcc
Confidence            345567889999999998  56777777776 4667777643333222222333333332  11 1112211   11124


Q ss_pred             CCCcEEEECC----Cchh----HHHHHHhcccCCEEEEE
Q psy2960         282 PKPKLALNCV----GGNS----ATNLLRTLVSKGVMVTY  312 (405)
Q Consensus       282 ~g~Dvvld~~----g~~~----~~~~~~~l~~~G~~v~~  312 (405)
                      ..+|+|+-..    +.+.    +..+.+.|+|+|+++.+
T Consensus       118 ~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~  156 (194)
T d1dusa_         118 RKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVV  156 (194)
T ss_dssp             SCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEE
Confidence            5789998632    3222    34467889999998654

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.53  E-value=0.14  Score=41.74  Aligned_cols=67  Identities=16%  Similarity=0.127  Sum_probs=41.9

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCC--cEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH-HhhhcCCCCCcEEEECC
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGL--KTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCV  291 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~--~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~Dvvld~~  291 (405)
                      ++|||.||+|-+|...+..+...|.  ++++.+++...         .. ...-....|+.+ ....  ...+|.|++|+
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~---------~~-~~~~~~~~d~~~~~~~~--~~~~d~vi~~~   70 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA---------EH-PRLDNPVGPLAELLPQL--DGSIDTAFCCL   70 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC---------CC-TTEECCBSCHHHHGGGC--CSCCSEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchh---------hc-ccccccccchhhhhhcc--ccchheeeeee
Confidence            6899999999999999999888887  45544433211         00 111112223333 2222  34689999998


Q ss_pred             Cc
Q psy2960         292 GG  293 (405)
Q Consensus       292 g~  293 (405)
                      |.
T Consensus        71 g~   72 (212)
T d2a35a1          71 GT   72 (212)
T ss_dssp             CC
T ss_pred             ee
Confidence            74

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=92.47  E-value=0.19  Score=40.52  Aligned_cols=87  Identities=14%  Similarity=0.096  Sum_probs=57.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH-HhhhcCCCCCcEEEECC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCV  291 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~Dvvld~~  291 (405)
                      .|.+|.|.|. |.+|...+++++.+|++++.........    ......+..   ...++++ +.+      .|+|..++
T Consensus        46 ~g~tvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~----~~~~~~~~~---~~~~l~~ll~~------sD~v~l~~  111 (191)
T d1gdha1          46 DNKTLGIYGF-GSIGQALAKRAQGFDMDIDYFDTHRASS----SDEASYQAT---FHDSLDSLLSV------SQFFSLNA  111 (191)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSCCCH----HHHHHHTCE---ECSSHHHHHHH------CSEEEECC
T ss_pred             cccceEEeec-ccchHHHHHHHHhhcccccccccccccc----chhhccccc---ccCCHHHHHhh------CCeEEecC
Confidence            4899999999 9999999999999999999886443321    111122221   1223344 332      48888766


Q ss_pred             Cc-h----hH-HHHHHhcccCCEEEEEe
Q psy2960         292 GG-N----SA-TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       292 g~-~----~~-~~~~~~l~~~G~~v~~g  313 (405)
                      .- +    .+ ...++.|+++..+|.++
T Consensus       112 plt~~T~~li~~~~l~~mk~~a~lIN~s  139 (191)
T d1gdha1         112 PSTPETRYFFNKATIKSLPQGAIVVNTA  139 (191)
T ss_dssp             CCCTTTTTCBSHHHHTTSCTTEEEEECS
T ss_pred             CCCchHhheecHHHhhCcCCccEEEecC
Confidence            42 2    11 34678889988888876

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=92.45  E-value=0.26  Score=43.34  Aligned_cols=101  Identities=20%  Similarity=0.183  Sum_probs=56.7

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCcchHHHHHHHHHcCCc---EEeChhhHHHHhhh-cCCCCC
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGAD---YVFTEEELRNISRD-ASIPKP  284 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~~~~~~~~~~~~lg~~---~v~~~~d~~~i~~~-t~g~g~  284 (405)
                      .+++|++||=.++  +.|..++.+|+. |+. |+++-.+++..+...+.++..|.+   +++..+-+..+... ..+..|
T Consensus       142 ~~~~g~~VLDl~~--g~G~~si~~a~~-ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~f  218 (324)
T d2as0a2         142 WVQPGDRVLDVFT--YTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKF  218 (324)
T ss_dssp             GCCTTCEEEETTC--TTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred             hcCCCCeeecccC--cccchhhhhhhc-CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCC
Confidence            4688999988877  456666666654 775 555543333323333444556652   22222212222221 235689


Q ss_pred             cEEEECCC---c-------------hhHHHHHHhcccCCEEEEEe
Q psy2960         285 KLALNCVG---G-------------NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       285 Dvvld~~g---~-------------~~~~~~~~~l~~~G~~v~~g  313 (405)
                      |+|+--..   .             ..+..++++|+|||.++.+.
T Consensus       219 D~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s  263 (324)
T d2as0a2         219 DIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCS  263 (324)
T ss_dssp             EEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             CchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            99884222   1             12345678999999998875

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.39  E-value=0.2  Score=39.07  Aligned_cols=85  Identities=12%  Similarity=0.110  Sum_probs=55.4

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCCchh
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNS  295 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~~~  295 (405)
                      +|.|.|. |.+|...+.-+...|.+|++.-++    +++.+.+.+.++...-+..+.  +.      ..|+||-|+..+.
T Consensus         2 kIgiIGl-G~MG~~~A~~L~~~G~~V~~~d~~----~~~~~~~~~~~~~~~~~~~e~--~~------~~d~ii~~v~~~~   68 (161)
T d1vpda2           2 KVGFIGL-GIMGKPMSKNLLKAGYSLVVSDRN----PEAIADVIAAGAETASTAKAI--AE------QCDVIITMLPNSP   68 (161)
T ss_dssp             EEEEECC-STTHHHHHHHHHHTTCEEEEECSC----HHHHHHHHHTTCEECSSHHHH--HH------HCSEEEECCSSHH
T ss_pred             EEEEEeh-hHHHHHHHHHHHHCCCeEEEEeCC----cchhHHHHHhhhhhcccHHHH--Hh------CCCeEEEEcCCHH
Confidence            5889999 999999998888899999887543    445677777777433232222  22      3588888886543


Q ss_pred             H-HH-------HHHhcccCCEEEEEe
Q psy2960         296 A-TN-------LLRTLVSKGVMVTYG  313 (405)
Q Consensus       296 ~-~~-------~~~~l~~~G~~v~~g  313 (405)
                      . ..       .+..++++-.++.++
T Consensus        69 ~v~~v~~~~~~~~~~~~~g~iiid~s   94 (161)
T d1vpda2          69 HVKEVALGENGIIEGAKPGTVLIDMS   94 (161)
T ss_dssp             HHHHHHHSTTCHHHHCCTTCEEEECS
T ss_pred             HHHHHHhCCcchhhccCCCCEEEECC
Confidence            2 22       233455666666655

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.36  E-value=0.057  Score=41.79  Aligned_cols=90  Identities=12%  Similarity=0.175  Sum_probs=48.5

Q ss_pred             EEEEeCCCcHHHHHHHHH-HHHc---CCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECC
Q psy2960         216 VVIQNGANSACGQNVIQI-ARHW---GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiql-a~~~---G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                      +|.|.||+|-||+-.+++ +.+.   -.+++...++...- .....  ......+.+..+....      .++|++|-|+
T Consensus         3 kVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g-~~~~~--~~~~~~~~~~~~~~~~------~~~DivF~a~   73 (146)
T d1t4ba1           3 NVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQ-AAPSF--GGTTGTLQDAFDLEAL------KALDIIVTCQ   73 (146)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTS-BCCGG--GTCCCBCEETTCHHHH------HTCSEEEECS
T ss_pred             EEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccc-ccccc--cCCceeeecccchhhh------hcCcEEEEec
Confidence            799999999999999984 4432   23444444332210 00000  0001111111111111      3689999999


Q ss_pred             CchhHHHHHHhcccCC---EEEEEec
Q psy2960         292 GGNSATNLLRTLVSKG---VMVTYGG  314 (405)
Q Consensus       292 g~~~~~~~~~~l~~~G---~~v~~g~  314 (405)
                      +.+........+.+.|   .++..+.
T Consensus        74 ~~~~s~~~~~~~~~~g~~~~VID~Ss   99 (146)
T d1t4ba1          74 GGDYTNEIYPKLRESGWQGYWIDAAS   99 (146)
T ss_dssp             CHHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CchHHHHhhHHHHhcCCCeecccCCc
Confidence            9988877655554444   3566554

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=92.12  E-value=0.13  Score=41.25  Aligned_cols=95  Identities=11%  Similarity=0.203  Sum_probs=56.5

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCCch
Q psy2960         216 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGN  294 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~~  294 (405)
                      +|.|.||+|-+|+-.++++... ..++..++++...-....+..+.+.............    ....+.|+||-|++..
T Consensus         7 kVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Dvvf~alp~~   82 (183)
T d2cvoa1           7 RIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKD----ADFSNVDAVFCCLPHG   82 (183)
T ss_dssp             EEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGG----CCGGGCSEEEECCSSS
T ss_pred             EEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhh----hhhcccceeeeccccc
Confidence            5899999999999999999876 4565555433221111112222221110000000111    0023579999999998


Q ss_pred             hHHHHHHhcccCCEEEEEec
Q psy2960         295 SATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       295 ~~~~~~~~l~~~G~~v~~g~  314 (405)
                      ........+...+..+....
T Consensus        83 ~s~~~~~~l~~~~~~v~~~~  102 (183)
T d2cvoa1          83 TTQEIIKGLPQELKIVDLSA  102 (183)
T ss_dssp             HHHHHHHTSCSSCEEEECSS
T ss_pred             hHHHHHHHHHhcCcccccch
Confidence            88877778888888877653

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.09  E-value=0.11  Score=45.58  Aligned_cols=101  Identities=15%  Similarity=0.156  Sum_probs=53.0

Q ss_pred             HHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC-cEE-eChhhHHHHhhhc-C
Q psy2960         204 MLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA-DYV-FTEEELRNISRDA-S  280 (405)
Q Consensus       204 al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~-~~v-~~~~d~~~i~~~t-~  280 (405)
                      |+.....+.+|++||-.|+  |.|..++.+|+ .|++.+..+...+......+...+.+. +.+ +-..+   +.++. .
T Consensus        26 ai~~~~~~~~~~~VLDiGc--G~G~lsl~aa~-~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~---~~~l~~~   99 (311)
T d2fyta1          26 FIYQNPHIFKDKVVLDVGC--GTGILSMFAAK-AGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGK---IEEVHLP   99 (311)
T ss_dssp             HHHHCGGGTTTCEEEEETC--TTSHHHHHHHH-TTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESC---TTTSCCS
T ss_pred             HHHhccccCCcCEEEEECC--CCCHHHHHHHH-cCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEee---HHHhcCc
Confidence            3444446678999999998  36777776666 587544444333332222333444443 222 11111   22221 2


Q ss_pred             CCCCcEEEEC-CC----ch----hHHHH-HHhcccCCEEE
Q psy2960         281 IPKPKLALNC-VG----GN----SATNL-LRTLVSKGVMV  310 (405)
Q Consensus       281 g~g~Dvvld~-~g----~~----~~~~~-~~~l~~~G~~v  310 (405)
                      ...+|+|+.. .+    ++    .+..+ -+.|+|+|+++
T Consensus       100 ~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1         100 VEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             CSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             cccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence            3578998852 22    22    12223 35799999886

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.99  E-value=0.059  Score=47.50  Aligned_cols=94  Identities=18%  Similarity=0.187  Sum_probs=51.3

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCcchHHHHHHHHHcCCc-EE-eChhhHHHHhhh-cCCCCCc
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGAD-YV-FTEEELRNISRD-ASIPKPK  285 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~~~~~~~~~~~~lg~~-~v-~~~~d~~~i~~~-t~g~g~D  285 (405)
                      .+.+|++||-.|+  |.|..++.+|+ .|++ |+++-.+ +......+..+..+.. .+ +-..+   +.++ .....+|
T Consensus        30 ~~~~~~~VLDiGc--G~G~ls~~aa~-~Ga~~V~avd~s-~~~~~a~~~~~~n~~~~~v~~~~~~---~~~~~~~~~~~D  102 (316)
T d1oria_          30 HLFKDKVVLDVGS--GTGILCMFAAK-AGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGK---VEEVELPVEKVD  102 (316)
T ss_dssp             HHHTTCEEEEETC--TTSHHHHHHHH-TTCSEEEEEECS-TTHHHHHHHHHHTTCTTTEEEEESC---TTTCCCSSSCEE
T ss_pred             ccCCcCEEEEEec--CCcHHHHHHHH-hCCCEEEEEcCc-HHHhhhhhHHHHhCCccccceEecc---HHHcccccceeE
Confidence            4568999999998  34777776666 6875 5555433 3333334444444432 12 11111   1111 1235689


Q ss_pred             EEEECC-C----ch-h---HHH-HHHhcccCCEEE
Q psy2960         286 LALNCV-G----GN-S---ATN-LLRTLVSKGVMV  310 (405)
Q Consensus       286 vvld~~-g----~~-~---~~~-~~~~l~~~G~~v  310 (405)
                      +|+... +    .+ .   +.. .-++|+|+|+++
T Consensus       103 ~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         103 IIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             EEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence            987532 2    11 1   222 347899999875

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=91.92  E-value=0.27  Score=39.48  Aligned_cols=88  Identities=14%  Similarity=0.043  Sum_probs=56.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      .|.+|.|.|. |.+|...++.++.+|++|+...+....    .......+.....   +..++.     ...|+|.-++.
T Consensus        43 ~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~----~~~~~~~~~~~~~---~l~~~l-----~~sD~v~~~~p  109 (188)
T d2naca1          43 EAMHVGTVAA-GRIGLAVLRRLAPFDVHLHYTDRHRLP----ESVEKELNLTWHA---TREDMY-----PVCDVVTLNCP  109 (188)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTCEEEEECSSCCC----HHHHHHHTCEECS---SHHHHG-----GGCSEEEECSC
T ss_pred             cccceeeccc-cccchhhhhhhhccCceEEEEeecccc----ccccccccccccC---CHHHHH-----Hhccchhhccc
Confidence            5889999999 999999999999999999988754332    1222333332221   222211     13588877664


Q ss_pred             c-hh----H-HHHHHhcccCCEEEEEe
Q psy2960         293 G-NS----A-TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       293 ~-~~----~-~~~~~~l~~~G~~v~~g  313 (405)
                      - +.    + .+.+..|+++..+|.++
T Consensus       110 lt~~T~~li~~~~l~~mk~ga~lIN~a  136 (188)
T d2naca1         110 LHPETEHMINDETLKLFKRGAYIVNTA  136 (188)
T ss_dssp             CCTTTTTCBSHHHHTTSCTTEEEEECS
T ss_pred             ccccchhhhHHHHHHhCCCCCEEEecC
Confidence            2 21    1 34578888887777765

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.91  E-value=0.34  Score=35.39  Aligned_cols=34  Identities=12%  Similarity=0.105  Sum_probs=30.4

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      .++|+|.|| |.+|+-+++.+..+|.+|..+.+.+
T Consensus        22 p~~v~IiGg-G~ig~E~A~~l~~~G~~Vtlve~~~   55 (117)
T d1ebda2          22 PKSLVVIGG-GYIGIELGTAYANFGTKVTILEGAG   55 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECC-CccceeeeeeecccccEEEEEEecc
Confidence            479999999 9999999999999999998887554

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=91.90  E-value=0.3  Score=40.55  Aligned_cols=101  Identities=14%  Similarity=0.109  Sum_probs=63.0

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHcCCcEEeC--hhhHHH-Hhhh----cC
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVFT--EEELRN-ISRD----AS  280 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~--G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~--~~d~~~-i~~~----t~  280 (405)
                      +...-++||-.|.  ++|..++.+|+++  +.+++++-.+++..+...+.+.+.|.+.-+.  ..+..+ +.++    ..
T Consensus        56 ~~~~~k~iLEiGT--~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~  133 (227)
T d1susa1          56 KLINAKNTMEIGV--YTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKN  133 (227)
T ss_dssp             HHHTCCEEEEECC--GGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGG
T ss_pred             HhcCCCcEEEecc--hhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhcccc
Confidence            3345689999997  7899999999887  4567666555544445556666777643221  122222 2222    12


Q ss_pred             CCCCcEEE-ECCCch---hHHHHHHhcccCCEEEEE
Q psy2960         281 IPKPKLAL-NCVGGN---SATNLLRTLVSKGVMVTY  312 (405)
Q Consensus       281 g~g~Dvvl-d~~g~~---~~~~~~~~l~~~G~~v~~  312 (405)
                      ...+|+|| |+--..   .+..++++|++||.++.=
T Consensus       134 ~~~fD~iFiDa~k~~y~~~~e~~~~ll~~gGiii~D  169 (227)
T d1susa1         134 HGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYD  169 (227)
T ss_dssp             TTCBSEEEECSCSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred             CCceeEEEeccchhhhHHHHHHHHhhcCCCcEEEEc
Confidence            45799987 443332   334578999999998764

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=91.73  E-value=0.19  Score=40.38  Aligned_cols=83  Identities=10%  Similarity=0.049  Sum_probs=57.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH-HhhhcCCCCCcEEEECC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCV  291 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~Dvvld~~  291 (405)
                      .|.+|+|+|. |.+|...+++++.+|++|+........         .  .+......++++ +.+      .|+|.-++
T Consensus        43 ~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~---------~--~~~~~~~~~l~ell~~------sDii~i~~  104 (188)
T d1sc6a1          43 RGKKLGIIGY-GHIGTQLGILAESLGMYVYFYDIENKL---------P--LGNATQVQHLSDLLNM------SDVVSLHV  104 (188)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCC---------C--CTTCEECSCHHHHHHH------CSEEEECC
T ss_pred             cceEEEEeec-ccchhhhhhhcccccceEeeccccccc---------h--hhhhhhhhhHHHHHhh------ccceeecc
Confidence            5889999999 999999999999999999998643221         0  111111223444 332      48988877


Q ss_pred             Cc-hh----H-HHHHHhcccCCEEEEEe
Q psy2960         292 GG-NS----A-TNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       292 g~-~~----~-~~~~~~l~~~G~~v~~g  313 (405)
                      .- +.    + .+.++.|+++..+|.++
T Consensus       105 plt~~T~~li~~~~l~~mk~~a~lIN~a  132 (188)
T d1sc6a1         105 PENPSTKNMMGAKEISLMKPGSLLINAS  132 (188)
T ss_dssp             CSSTTTTTCBCHHHHHHSCTTEEEEECS
T ss_pred             cCCcchhhhccHHHHhhCCCCCEEEEcC
Confidence            52 21    2 35689999988888876

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=91.72  E-value=0.25  Score=36.52  Aligned_cols=38  Identities=18%  Similarity=0.270  Sum_probs=33.3

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      .++++++|+|.|+ |.+|.-++..++.+|.+|..+.+++
T Consensus        26 ~~~~~~~vvIIGg-G~iG~E~A~~l~~~g~~Vtli~~~~   63 (121)
T d1d7ya2          26 GLRPQSRLLIVGG-GVIGLELAATARTAGVHVSLVETQP   63 (121)
T ss_dssp             HCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             hhhcCCeEEEECc-chhHHHHHHHhhcccceEEEEeecc
Confidence            4567899999999 9999999999999999998887554

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.63  E-value=0.15  Score=45.42  Aligned_cols=73  Identities=11%  Similarity=0.073  Sum_probs=48.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcE--EeChhhHHHHhhhcCCCCCcEEEEC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADY--VFTEEELRNISRDASIPKPKLALNC  290 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~--v~~~~d~~~i~~~t~g~g~Dvvld~  290 (405)
                      ..-+|||+||+|-+|...+..+...|.+|+++.+.....     .........  ..|..+...+.+..  .++|.|+.+
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~-----~~~~~~~~~~~~~D~~~~~~~~~~~--~~~d~Vih~   86 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEH-----MTEDMFCDEFHLVDLRVMENCLKVT--EGVDHVFNL   86 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSS-----SCGGGTCSEEEECCTTSHHHHHHHH--TTCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccc-----hhhhcccCcEEEeechhHHHHHHHh--hcCCeEeec
Confidence            467899999999999999999999999999886433221     111122222  23444444433332  478999997


Q ss_pred             CC
Q psy2960         291 VG  292 (405)
Q Consensus       291 ~g  292 (405)
                      .+
T Consensus        87 a~   88 (363)
T d2c5aa1          87 AA   88 (363)
T ss_dssp             CC
T ss_pred             cc
Confidence            74

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.62  E-value=0.27  Score=36.33  Aligned_cols=34  Identities=12%  Similarity=0.056  Sum_probs=30.2

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      .++++|.|+ |.+|+=+++++..+|++|..+.+.+
T Consensus        23 p~~~vIiG~-G~ig~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          23 PKRLTIIGG-GIIGLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCeEEEECC-CchHHHHHHHHHhhCcceeEEEecc
Confidence            379999999 9999999999999999998886543

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=91.51  E-value=0.87  Score=35.60  Aligned_cols=95  Identities=15%  Similarity=0.081  Sum_probs=58.1

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc-------EE-------e--------ChhhHH
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-------YV-------F--------TEEELR  273 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~-------~v-------~--------~~~d~~  273 (405)
                      +|.|.|- |-+|.++.+++...+.+++++-... ..+ .+..+.+....       .-       +        +.++..
T Consensus         2 kigINGf-GRIGR~~~R~l~~~~i~iv~INd~~-~~~-~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p~   78 (168)
T d2g82a1           2 KVGINGF-GRIGRQVFRILHSRGVEVALINDLT-DNK-TLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPK   78 (168)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCCEEEEECSS-CHH-HHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGG
T ss_pred             EEEEECC-cHHHHHHHHHHhcCCCEEEEECCCc-chh-hhhheeecccccCccccccccccceeEecceeEEEEecCChH
Confidence            5889999 9999999999888899988887653 323 33444343211       00       1        112222


Q ss_pred             HHhhhcCCCCCcEEEECCCchhHH-HHHHhcccCCEEEEEecc
Q psy2960         274 NISRDASIPKPKLALNCVGGNSAT-NLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       274 ~i~~~t~g~g~Dvvld~~g~~~~~-~~~~~l~~~G~~v~~g~~  315 (405)
                      ++.-  ...|+|+|+||+|.-... .+...+..+-+-|.+..+
T Consensus        79 ~i~W--~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP  119 (168)
T d2g82a1          79 EIPW--AEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAP  119 (168)
T ss_dssp             GCCT--GGGTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSC
T ss_pred             HCcc--cccCCceeEeccccccchHHhhhhhccccceeeeccc
Confidence            2110  124799999999975444 445667666655666544

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.40  E-value=0.25  Score=38.90  Aligned_cols=97  Identities=9%  Similarity=0.097  Sum_probs=66.2

Q ss_pred             hccCCCcHHHHHHHHHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChh
Q psy2960         191 ISGITSNPCTAYRMLKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEE  270 (405)
Q Consensus       191 Aa~~~~~~~ta~~al~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~  270 (405)
                      -+.+||.....+..|....---.|++|+|.|.+.-+|.-...++...||+|+.+-+.....   .+.             
T Consensus        16 ~~~~PcTp~aii~lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l---~~~-------------   79 (170)
T d1a4ia1          16 DCFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHL---DEE-------------   79 (170)
T ss_dssp             SCCCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSH---HHH-------------
T ss_pred             CCCCCChHHHHHHHHHHhCcccccceEEEEecCCccchHHHHHHHhccCceEEEecccccH---HHH-------------
Confidence            3567777776666666543334799999999999999999999999999988764322110   111             


Q ss_pred             hHHHHhhhcCCCCCcEEEECCCchhHHHHHHhcccCCEEEEEec
Q psy2960         271 ELRNISRDASIPKPKLALNCVGGNSATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       271 d~~~i~~~t~g~g~Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~  314 (405)
                          +      +..|+++-++|.+.+.. -+.++++-.++.+|.
T Consensus        80 ----~------~~aDivi~a~G~~~~i~-~~~vk~g~iviDvgi  112 (170)
T d1a4ia1          80 ----V------NKGDILVVATGQPEMVK-GEWIKPGAIVIDCGI  112 (170)
T ss_dssp             ----H------TTCSEEEECCCCTTCBC-GGGSCTTCEEEECCC
T ss_pred             ----H------hhccchhhccccccccc-cccccCCCeEeccCc
Confidence                1      23578888887655422 356777777777774

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.34  E-value=1  Score=35.58  Aligned_cols=96  Identities=11%  Similarity=0.165  Sum_probs=56.7

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhh--c-C------CCCCc
Q psy2960         216 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRD--A-S------IPKPK  285 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~--t-~------g~g~D  285 (405)
                      +|.|.|- |-+|...++.+... ..+++++.+....  .....+...+.......+....+.+.  . .      ..++|
T Consensus         3 KVaINGf-GRIGR~v~Ral~~~~dievVaInd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vD   79 (178)
T d1b7go1           3 NVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSPN--YEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSD   79 (178)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSSCS--HHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCS
T ss_pred             EEEEECC-CHHHHHHHHHHHhCCCCEEEEEECCCCc--HHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCC
Confidence            6899997 99999999998876 5688888755433  22333334444433332221111100  0 0      12589


Q ss_pred             EEEECCCchhHHH-HHHhcccCCEEEEEec
Q psy2960         286 LALNCVGGNSATN-LLRTLVSKGVMVTYGG  314 (405)
Q Consensus       286 vvld~~g~~~~~~-~~~~l~~~G~~v~~g~  314 (405)
                      +|+||+|.-...+ +-.++..+-+++..+.
T Consensus        80 iViecTG~f~~~e~a~~hl~~G~KvIi~~~  109 (178)
T d1b7go1          80 IVVDTTPNGVGAQYKPIYLQLQRNAIFQGG  109 (178)
T ss_dssp             EEEECCSTTHHHHHHHHHHHTTCEEEECTT
T ss_pred             EEEECCCCcCCHHHHHHHHHcCCEEEEECC
Confidence            9999999754443 4456666657776553

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=91.32  E-value=0.092  Score=45.49  Aligned_cols=36  Identities=14%  Similarity=0.060  Sum_probs=31.9

Q ss_pred             CCCEEEEeCCCc--HHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         213 PGDVVIQNGANS--ACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       213 ~g~~VLI~ga~G--~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      .|+++||.||+|  |+|.+.++.+...|++|+.+.++.
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~   44 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVP   44 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCch
Confidence            689999999976  899999999999999998886543

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=91.30  E-value=0.3  Score=35.81  Aligned_cols=38  Identities=11%  Similarity=0.243  Sum_probs=32.5

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      .++..++|+|.|| |.+|.-+++.+..+|.+|..+.+++
T Consensus        18 ~l~~p~~v~IiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          18 NIKESKKIGIVGS-GYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             TCCCCSEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             ccCCCCEEEEECC-chHHHHHHHHHHhccccceeeehhc
Confidence            3455689999999 9999999999999999999887543

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=91.24  E-value=0.25  Score=43.49  Aligned_cols=36  Identities=14%  Similarity=0.132  Sum_probs=29.8

Q ss_pred             CCEEEEeCC--CcHHHHHHHHHHHHcCCcEEEEecCCc
Q psy2960         214 GDVVIQNGA--NSACGQNVIQIARHWGLKTINIVRNRD  249 (405)
Q Consensus       214 g~~VLI~ga--~G~vG~~aiqla~~~G~~v~~~~~~~~  249 (405)
                      ++..||.|+  +.|+|.+.++.+...||+|+.+.++..
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~   39 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPV   39 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGG
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchh
Confidence            567899995  359999999999999999998875543

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=91.08  E-value=0.29  Score=42.92  Aligned_cols=97  Identities=10%  Similarity=0.104  Sum_probs=55.6

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE--e--ChhhHHH-HhhhcCCCCCcE
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV--F--TEEELRN-ISRDASIPKPKL  286 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v--~--~~~d~~~-i~~~t~g~g~Dv  286 (405)
                      .+|++||=.++  +.|..++++|+ -+++|+++-.+++..+...+.++..|.+.+  +  |..++.. +.+  .+..||+
T Consensus       144 ~~g~rVLDl~~--gtG~~s~~~a~-g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~--~~~~fD~  218 (318)
T d1wxxa2         144 FRGERALDVFS--YAGGFALHLAL-GFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEK--EGERFDL  218 (318)
T ss_dssp             CCEEEEEEETC--TTTHHHHHHHH-HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHH--TTCCEEE
T ss_pred             hCCCeeeccCC--CCcHHHHHHHh-cCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHh--hhcCCCE
Confidence            47999988776  33555666664 355676665554443444455556676422  2  2223322 222  2567998


Q ss_pred             EEECC---C--c-----------hhHHHHHHhcccCCEEEEEe
Q psy2960         287 ALNCV---G--G-----------NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       287 vld~~---g--~-----------~~~~~~~~~l~~~G~~v~~g  313 (405)
                      |+--.   +  .           +....++++|+|||.++.+.
T Consensus       219 Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~s  261 (318)
T d1wxxa2         219 VVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATAS  261 (318)
T ss_dssp             EEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            87421   1  1           12234678899999998875

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=91.05  E-value=0.12  Score=43.30  Aligned_cols=94  Identities=14%  Similarity=0.087  Sum_probs=54.9

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECC
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                      .++++||=.|+  |.|..+..+++ .|.+++++--|++..+...+.++..|...-+-..|   +....-...+|+|+...
T Consensus        36 ~~~~~vLDiGC--G~G~~~~~l~~-~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d---~~~~~~~~~fD~i~~~~  109 (246)
T d1y8ca_          36 LVFDDYLDLAC--GTGNLTENLCP-KFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQD---ISNLNINRKFDLITCCL  109 (246)
T ss_dssp             CCTTEEEEETC--TTSTTHHHHGG-GSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCC---GGGCCCSCCEEEEEECT
T ss_pred             CCCCeEEEEeC--cCCHHHHHHHH-hCCccEeeccchhhhhhccccccccCccceeeccc---hhhhcccccccccceee
Confidence            45689999999  35777777776 48888887555443333334444455432121122   22222245799998643


Q ss_pred             Cc-------h----hHHHHHHhcccCCEEEE
Q psy2960         292 GG-------N----SATNLLRTLVSKGVMVT  311 (405)
Q Consensus       292 g~-------~----~~~~~~~~l~~~G~~v~  311 (405)
                      +.       +    .+..+.++|+|+|.++.
T Consensus       110 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~  140 (246)
T d1y8ca_         110 DSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             TGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             eeeeccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence            31       1    23345688999999885

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=91.00  E-value=0.81  Score=34.91  Aligned_cols=82  Identities=16%  Similarity=0.188  Sum_probs=49.4

Q ss_pred             EEEEeCCCcHHHHHHHH-HHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCCch
Q psy2960         216 VVIQNGANSACGQNVIQ-IARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGN  294 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiq-la~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~~  294 (405)
                      +|.+.|+ |.+|.+.++ +.+.-+.++++..++.++   ..++.+++|....-+.++   +      ...|+||=|+-..
T Consensus         2 kI~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~~~---~~~l~~~~~~~~~~~~~~---v------~~~Div~lavkP~   68 (152)
T d1yqga2           2 NVYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGAEK---RERLEKELGVETSATLPE---L------HSDDVLILAVKPQ   68 (152)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHCSCEEEEECSSHHH---HHHHHHHTCCEEESSCCC---C------CTTSEEEECSCHH
T ss_pred             EEEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCChhH---HHHhhhhccccccccccc---c------cccceEEEecCHH
Confidence            5889999 999998877 445433667666544322   223344566643322221   1      2358999888766


Q ss_pred             hHHHHHHhcccCCEEE
Q psy2960         295 SATNLLRTLVSKGVMV  310 (405)
Q Consensus       295 ~~~~~~~~l~~~G~~v  310 (405)
                      .+...++-+++.+.++
T Consensus        69 ~~~~v~~~l~~~~~~v   84 (152)
T d1yqga2          69 DMEAACKNIRTNGALV   84 (152)
T ss_dssp             HHHHHHTTCCCTTCEE
T ss_pred             HHHHhHHHHhhcccEE
Confidence            6666676666655544

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=90.68  E-value=1.5  Score=34.30  Aligned_cols=94  Identities=18%  Similarity=0.238  Sum_probs=58.9

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcC-CcEEEEecCCcchHHHHHHHHHcCCcEEeChhh----HHH--------HhhhcCCC
Q psy2960         216 VVIQNGANSACGQNVIQIARHWG-LKTINIVRNRDDIDKLKSYLKSLGADYVFTEEE----LRN--------ISRDASIP  282 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G-~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d----~~~--------i~~~t~g~  282 (405)
                      +|.|.|- |-+|....+++...+ .+++++......  .....+...+.+......+    +..        ....  -.
T Consensus         3 ~VgINGf-GRIGR~v~R~l~~~~di~vvaInd~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~--~~   77 (171)
T d1cf2o1           3 AVAINGY-GTVGKRVADAIAQQDDMKVIGVSKTRPD--FEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDM--LD   77 (171)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTSSSEEEEEEEESSCS--HHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHH--HH
T ss_pred             EEEEEcC-cHHHHHHHHHHHhCCCceEEEEecCCcH--HHHHHHHhcCCceEecccccceeecccCcccCCChhHh--hc
Confidence            6899998 999999999876665 567776644322  2234455666665443222    111        1111  13


Q ss_pred             CCcEEEECCCchhHH-HHHHhcccCCEEEEEec
Q psy2960         283 KPKLALNCVGGNSAT-NLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       283 g~Dvvld~~g~~~~~-~~~~~l~~~G~~v~~g~  314 (405)
                      ++|+|+||+|.-... .+-..+..+-+.+..+.
T Consensus        78 ~vDvViEcTG~f~~~~~~~~hl~~G~K~vi~~~  110 (171)
T d1cf2o1          78 EADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGG  110 (171)
T ss_dssp             TCSEEEECCSTTHHHHHHHHHHHTTCEEEECTT
T ss_pred             CCCEEEEccCCCCCHHHHHHHHHcCCCEEEECC
Confidence            689999999975544 34566777778777653

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.61  E-value=0.32  Score=40.07  Aligned_cols=102  Identities=10%  Similarity=0.075  Sum_probs=61.8

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHcCCcEEe-----ChhhH-HHHhhhcC
Q psy2960         209 NSLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVF-----TEEEL-RNISRDAS  280 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~aiqla~~~--G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~-----~~~d~-~~i~~~t~  280 (405)
                      .+...-++||-.|.  +.|..++.+|+.+  +.+++++-.+++..+...+.+...|....+     +..+. .++.....
T Consensus        55 ~~~~~~k~vLEiGt--~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~  132 (219)
T d2avda1          55 ARLIQAKKALDLGT--FTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGE  132 (219)
T ss_dssp             HHHTTCCEEEEECC--TTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTC
T ss_pred             HHccCCCeEEEEec--hhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcc
Confidence            34455689999997  6788899999887  456666654444444445666666653222     22222 12222222


Q ss_pred             CCCCcEEEECCCch----hHHHHHHhcccCCEEEEE
Q psy2960         281 IPKPKLALNCVGGN----SATNLLRTLVSKGVMVTY  312 (405)
Q Consensus       281 g~g~Dvvld~~g~~----~~~~~~~~l~~~G~~v~~  312 (405)
                      ...+|+|+--...+    .+..+++.|++||-++.=
T Consensus       133 ~~~fD~ifiD~dk~~y~~~~~~~~~lL~~GGvii~D  168 (219)
T d2avda1         133 AGTFDVAVVDADKENCSAYYERCLQLLRPGGILAVL  168 (219)
T ss_dssp             TTCEEEEEECSCSTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cCCccEEEEeCCHHHHHHHHHHHHHHhcCCcEEEEe
Confidence            45689887544432    234578999999998774

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=90.55  E-value=0.09  Score=47.11  Aligned_cols=32  Identities=13%  Similarity=0.155  Sum_probs=28.2

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecC
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRN  247 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~  247 (405)
                      +|||.||+|-+|...+..+...|.++++.++.
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~   33 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDK   33 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            69999999999999999998999988777643

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=90.44  E-value=0.053  Score=42.51  Aligned_cols=87  Identities=14%  Similarity=0.116  Sum_probs=54.1

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc--E---EeChhhHHHHhhhcCCCCCcEEEEC
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD--Y---VFTEEELRNISRDASIPKPKLALNC  290 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~--~---v~~~~d~~~i~~~t~g~g~Dvvld~  290 (405)
                      +|+|.|+ |.+|.+....+...|.+|..+.++++....    ....+.+  .   .+...+.+.+      ..+|++|-|
T Consensus         2 kI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~------~~~D~iii~   70 (167)
T d1ks9a2           2 KITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQPYCS----VNLVETDGSIFNESLTANDPDFL------ATSDLLLVT   70 (167)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSEEE----EEEECTTSCEEEEEEEESCHHHH------HTCSEEEEC
T ss_pred             EEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHHhhh----hccccCCccccccccccchhhhh------cccceEEEe
Confidence            6999999 999999998888899999999877643211    1111111  0   0001111111      357999999


Q ss_pred             CCchhHHHHHH----hcccCCEEEEEe
Q psy2960         291 VGGNSATNLLR----TLVSKGVMVTYG  313 (405)
Q Consensus       291 ~g~~~~~~~~~----~l~~~G~~v~~g  313 (405)
                      +....+..+++    ++.++..++.+.
T Consensus        71 vka~~~~~~~~~l~~~~~~~~~Iv~~q   97 (167)
T d1ks9a2          71 LKAWQVSDAVKSLASTLPVTTPILLIH   97 (167)
T ss_dssp             SCGGGHHHHHHHHHTTSCTTSCEEEEC
T ss_pred             ecccchHHHHHhhccccCcccEEeecc
Confidence            99877665543    445566666654

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=90.35  E-value=0.3  Score=41.83  Aligned_cols=100  Identities=12%  Similarity=0.128  Sum_probs=61.8

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcE
Q psy2960         209 NSLSPGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKL  286 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~aiqla~~~--G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dv  286 (405)
                      .++.++.+||=.|+  |.|..+..+++..  |++++++--+++..+...+.+...+.+.-+...|+..   ..-...+|+
T Consensus        23 ~~~~~~~~ILDiGc--G~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~---~~~~~~fD~   97 (281)
T d2gh1a1          23 WKITKPVHIVDYGC--GYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATE---IELNDKYDI   97 (281)
T ss_dssp             SCCCSCCEEEEETC--TTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTT---CCCSSCEEE
T ss_pred             hccCCcCEEEEecC--cCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccc---ccccCCceE
Confidence            36778899999998  4688999999876  4677777544333333334444555543332223222   111346999


Q ss_pred             EEECCC-----c--hhHHHHHHhcccCCEEEEEe
Q psy2960         287 ALNCVG-----G--NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       287 vld~~g-----~--~~~~~~~~~l~~~G~~v~~g  313 (405)
                      |+..-.     .  ..+....+.|+|||.++..-
T Consensus        98 v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~  131 (281)
T d2gh1a1          98 AICHAFLLHMTTPETMLQKMIHSVKKGGKIICFE  131 (281)
T ss_dssp             EEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEE
Confidence            986543     2  22355679999999998765

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=90.35  E-value=0.29  Score=41.05  Aligned_cols=35  Identities=20%  Similarity=0.216  Sum_probs=32.0

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecC
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN  247 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~  247 (405)
                      -.|.+|+|.|. |.||..+++++...|++++++.++
T Consensus        29 l~g~~v~IqGf-GnVG~~~a~~L~~~Gakvv~vsD~   63 (242)
T d1v9la1          29 IEGKTVAIQGM-GNVGRWTAYWLEKMGAKVIAVSDI   63 (242)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEEECS
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEeecc
Confidence            47999999998 999999999999999999988754

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.29  E-value=0.25  Score=43.50  Aligned_cols=97  Identities=18%  Similarity=0.203  Sum_probs=51.3

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc-EE-eChhhHHHHhhhcCCCCCcE
Q psy2960         209 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YV-FTEEELRNISRDASIPKPKL  286 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~-~v-~~~~d~~~i~~~t~g~g~Dv  286 (405)
                      ..+.+|++||-.|+  |.|..+..+|+ .|++.+..+...+......+..++.+.. .+ +-..+..++.  .....+|+
T Consensus        34 ~~~~~~~~VLDlGc--GtG~ls~~aa~-~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~--~~~~~~D~  108 (328)
T d1g6q1_          34 KDLFKDKIVLDVGC--GTGILSMFAAK-HGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVH--LPFPKVDI  108 (328)
T ss_dssp             HHHHTTCEEEEETC--TTSHHHHHHHH-TCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC--CSSSCEEE
T ss_pred             cccCCcCEEEEeCC--CCCHHHHHHHH-hCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhcc--CcccceeE
Confidence            34568999999998  35676665554 6875555554433333334444555532 11 1111111110  11356899


Q ss_pred             EEECCC-----c-h---hHHHH-HHhcccCCEEE
Q psy2960         287 ALNCVG-----G-N---SATNL-LRTLVSKGVMV  310 (405)
Q Consensus       287 vld~~g-----~-~---~~~~~-~~~l~~~G~~v  310 (405)
                      |+...-     . .   .+..+ -++|+|+|+++
T Consensus       109 i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         109 IISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             EEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence            875321     1 1   12333 37899999874

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=90.27  E-value=0.33  Score=39.99  Aligned_cols=93  Identities=15%  Similarity=0.110  Sum_probs=56.9

Q ss_pred             EEEEeCCCcHHHHH-HHHHHHH-cCCcEEEEecCCcchHHHHHHHHHcCCc--EEeChhhHHHHhhhcCCCCCcEEEECC
Q psy2960         216 VVIQNGANSACGQN-VIQIARH-WGLKTINIVRNRDDIDKLKSYLKSLGAD--YVFTEEELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       216 ~VLI~ga~G~vG~~-aiqla~~-~G~~v~~~~~~~~~~~~~~~~~~~lg~~--~v~~~~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                      +|.|.|+ |.+|.- .+...+. -+++++++++...  +...+.++++|.+  .+..+.|+.++.   ....+|+|+-|+
T Consensus        35 riaiIG~-G~~~~~~~~~~~~~~~~~~ivav~d~~~--~~a~~~~~~~~i~~~~~~~~~d~~ell---~~~~iD~V~I~t  108 (221)
T d1h6da1          35 GYAIVGL-GKYALNQILPGFAGCQHSRIEALVSGNA--EKAKIVAAEYGVDPRKIYDYSNFDKIA---KDPKIDAVYIIL  108 (221)
T ss_dssp             EEEEECC-SHHHHHTHHHHTTTCSSEEEEEEECSCH--HHHHHHHHHTTCCGGGEECSSSGGGGG---GCTTCCEEEECS
T ss_pred             EEEEEcC-cHHHHHHHHHHHHhCCCceEEEEecCCH--HHHHHHHHhhccccccccccCchhhhc---ccccceeeeecc
Confidence            6899998 888863 3343333 3889999886543  2334555666653  343445555422   235789999888


Q ss_pred             Cchh-HHHHHHhcccCCEEEEEecc
Q psy2960         292 GGNS-ATNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       292 g~~~-~~~~~~~l~~~G~~v~~g~~  315 (405)
                      .... ...+.+++.. |+=+.+.++
T Consensus       109 p~~~H~~~~~~al~~-gk~v~~EKP  132 (221)
T d1h6da1         109 PNSLHAEFAIRAFKA-GKHVMCEKP  132 (221)
T ss_dssp             CGGGHHHHHHHHHHT-TCEEEECSS
T ss_pred             chhhhhhHHHHhhhc-chhhhcCCC
Confidence            8654 4455666655 555666543

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.07  E-value=0.57  Score=36.34  Aligned_cols=47  Identities=13%  Similarity=-0.046  Sum_probs=34.8

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV  266 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v  266 (405)
                      ++|.+.|. |-+|...+.-+...|.+|++.-++    +.+.+.+.+.+....
T Consensus         2 ~kIg~IGl-G~MG~~iA~~L~~~g~~v~~~d~~----~~~~~~~~~~~~~~~   48 (162)
T d3cuma2           2 KQIAFIGL-GHMGAPMATNLLKAGYLLNVFDLV----QSAVDGLVAAGASAA   48 (162)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTCEEEEECSS----HHHHHHHHHTTCEEC
T ss_pred             CEEEEEEE-HHHHHHHHHHHHHCCCeEEEEECc----hhhhhhhhhhhcccc
Confidence            46899999 999998888777789998887433    344666667776533

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.00  E-value=0.78  Score=36.22  Aligned_cols=89  Identities=15%  Similarity=0.115  Sum_probs=55.0

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC----------cEEeChhhHHHHhhhcCCCCCc
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA----------DYVFTEEELRNISRDASIPKPK  285 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~----------~~v~~~~d~~~i~~~t~g~g~D  285 (405)
                      +|.|.|+ |..|.+.+..+...|.+|....+..++  +..+...+-..          ..+.-..|..+   .  -...|
T Consensus         2 kI~ViGa-G~~GtalA~~la~~g~~V~l~~r~~~~--~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~---~--~~~ad   73 (180)
T d1txga2           2 IVSILGA-GAMGSALSVPLVDNGNEVRIWGTEFDT--EILKSISAGREHPRLGVKLNGVEIFWPEQLEK---C--LENAE   73 (180)
T ss_dssp             EEEEESC-CHHHHHHHHHHHHHCCEEEEECCGGGH--HHHHHHHTTCCBTTTTBCCCSEEEECGGGHHH---H--HTTCS
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCCEEEEEEecccH--HHHHHHhhhhhhhhhcchhccccccccccHHH---H--Hhccc
Confidence            6899999 999999999988889998888764332  22222222111          11222233333   1  13569


Q ss_pred             EEEECCCchhHHHHHHhccc---CCEEEEE
Q psy2960         286 LALNCVGGNSATNLLRTLVS---KGVMVTY  312 (405)
Q Consensus       286 vvld~~g~~~~~~~~~~l~~---~G~~v~~  312 (405)
                      +|+.++....+...++.+.+   ...++.+
T Consensus        74 ~Ii~avps~~~~~~~~~l~~~l~~~~ii~~  103 (180)
T d1txga2          74 VVLLGVSTDGVLPVMSRILPYLKDQYIVLI  103 (180)
T ss_dssp             EEEECSCGGGHHHHHHHHTTTCCSCEEEEC
T ss_pred             hhhcccchhhhHHHHHhhccccccceeccc
Confidence            99999998888776655443   3444444

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=89.87  E-value=0.13  Score=43.94  Aligned_cols=95  Identities=13%  Similarity=0.052  Sum_probs=60.9

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEE
Q psy2960         211 LSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALN  289 (405)
Q Consensus       211 ~~~g~~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld  289 (405)
                      ..++.+||=.|+  |.|..+..+++.. +.+++++--+    +..++.+++......+...|...+.  .....+|+|+.
T Consensus        82 ~~~~~~iLDiGc--G~G~~~~~l~~~~~~~~~~giD~s----~~~~~~a~~~~~~~~~~~~d~~~l~--~~~~sfD~v~~  153 (268)
T d1p91a_          82 DDKATAVLDIGC--GEGYYTHAFADALPEITTFGLDVS----KVAIKAAAKRYPQVTFCVASSHRLP--FSDTSMDAIIR  153 (268)
T ss_dssp             CTTCCEEEEETC--TTSTTHHHHHHTCTTSEEEEEESC----HHHHHHHHHHCTTSEEEECCTTSCS--BCTTCEEEEEE
T ss_pred             CCCCCEEEEeCC--CCcHHHHHHHHHCCCCEEEEecch----Hhhhhhhhcccccccceeeehhhcc--CCCCCEEEEee
Confidence            457889999998  5688888888876 5677776433    3345555543322111111111110  11346899998


Q ss_pred             CCCchhHHHHHHhcccCCEEEEEe
Q psy2960         290 CVGGNSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       290 ~~g~~~~~~~~~~l~~~G~~v~~g  313 (405)
                      ...-..+.+..+.|+|+|.++...
T Consensus       154 ~~~~~~~~e~~rvLkpgG~l~~~~  177 (268)
T d1p91a_         154 IYAPCKAEELARVVKPGGWVITAT  177 (268)
T ss_dssp             ESCCCCHHHHHHHEEEEEEEEEEE
T ss_pred             cCCHHHHHHHHHHhCCCcEEEEEe
Confidence            766677778889999999998875

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=89.80  E-value=0.065  Score=46.04  Aligned_cols=61  Identities=11%  Similarity=0.219  Sum_probs=37.6

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH-HhhhcCCCCCcEEEECCC
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCVG  292 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~Dvvld~~g  292 (405)
                      +|||.||+|-+|...+..+...|. ++++......          +-.| +-|.+++.. +.+    .++|+||.|.|
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g~-~v~~~~~~~~----------~~~D-l~~~~~~~~~i~~----~~~D~Vih~Aa   63 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVGN-LIALDVHSKE----------FCGD-FSNPKGVAETVRK----LRPDVIVNAAA   63 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTSE-EEEECTTCSS----------SCCC-TTCHHHHHHHHHH----HCCSEEEECCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC-EEEEECCCcc----------ccCc-CCCHHHHHHHHHH----cCCCEEEEecc
Confidence            699999999999999888777775 4444322111          1111 112333334 433    36899999986

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=89.79  E-value=1.1  Score=36.83  Aligned_cols=81  Identities=15%  Similarity=0.115  Sum_probs=51.9

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECC
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                      -.|.+|+|.|- |.||..+++++...|++++++..+.   ..........|+. .++.+++   .    ...+|+.+=|.
T Consensus        37 l~g~~v~IqG~-GnVG~~~a~~L~~~Gakvv~~d~~~---~~~~~~~~~~g~~-~~~~~~~---~----~~~cDIl~PcA  104 (230)
T d1leha1          37 LEGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDVNK---AAVSAAVAEEGAD-AVAPNAI---Y----GVTCDIFAPCA  104 (230)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCH---HHHHHHHHHHCCE-ECCGGGT---T----TCCCSEEEECS
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEeecccH---HHHHHHHHhcCCc-ccCCccc---c----cccccEecccc
Confidence            36899999999 9999999999999999999774222   2223334445654 3333321   1    23578888777


Q ss_pred             CchhH-HHHHHhcc
Q psy2960         292 GGNSA-TNLLRTLV  304 (405)
Q Consensus       292 g~~~~-~~~~~~l~  304 (405)
                      -+..+ ......++
T Consensus       105 ~~~~I~~~~~~~l~  118 (230)
T d1leha1         105 LGAVLNDFTIPQLK  118 (230)
T ss_dssp             CSCCBSTTHHHHCC
T ss_pred             cccccChHHhhccC
Confidence            55433 23444443

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.66  E-value=1.5  Score=33.15  Aligned_cols=73  Identities=12%  Similarity=0.057  Sum_probs=43.9

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHHHHHHHHHcCC---cEEeChhhHHHHhhhcCCCCCcEEEEC
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDKLKSYLKSLGA---DYVFTEEELRNISRDASIPKPKLALNC  290 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~~~~~~~~lg~---~~v~~~~d~~~i~~~t~g~g~Dvvld~  290 (405)
                      .+|.|.||+|.||..++.++...|. +.++..+.++...+.++.......   ...+...+..+   .  -.+.|+|+-+
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~---~--~~~aDivVit   75 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPD---C--LKGCDVVVIP   75 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHH---H--HTTCSEEEEC
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHH---H--hCCCCEEEEC
Confidence            3789999889999999999988886 777777654432222222111111   11222233222   1  1467999998


Q ss_pred             CC
Q psy2960         291 VG  292 (405)
Q Consensus       291 ~g  292 (405)
                      .|
T Consensus        76 ag   77 (144)
T d1mlda1          76 AG   77 (144)
T ss_dssp             CS
T ss_pred             CC
Confidence            88

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.50  E-value=0.18  Score=40.21  Aligned_cols=33  Identities=9%  Similarity=0.097  Sum_probs=28.2

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCc-EEEEecC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLK-TINIVRN  247 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~  247 (405)
                      +++|+|.|| |..|+.++..++..|++ |.+.-++
T Consensus         4 ~~kVaIIGa-GpaGl~aA~~l~~~G~~~V~v~E~~   37 (196)
T d1gtea4           4 SAKIALLGA-GPASISCASFLARLGYSDITIFEKQ   37 (196)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHCCCCeEEEEEec
Confidence            689999999 99999999999999995 6665443

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.49  E-value=0.3  Score=37.38  Aligned_cols=89  Identities=15%  Similarity=0.152  Sum_probs=53.0

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHc---CCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH-HhhhcCCCCCcEEEECC
Q psy2960         216 VVIQNGANSACGQNVIQIARHW---GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCV  291 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~---G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~Dvvld~~  291 (405)
                      +|.|.||+|-+|+-.++++...   ..++...+++..           .|-..-....+... -.+...-.+.|++|-|+
T Consensus         4 nVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~-----------~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~   72 (144)
T d2hjsa1           4 NVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAES-----------AGQRMGFAESSLRVGDVDSFDFSSVGLAFFAA   72 (144)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTT-----------TTCEEEETTEEEECEEGGGCCGGGCSEEEECS
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeeccc-----------CCcceeeccccchhccchhhhhccceEEEecC
Confidence            6999999999999999998643   456665554322           12111111111110 00011124579999999


Q ss_pred             CchhHHHHH-HhcccCCEEEEEecc
Q psy2960         292 GGNSATNLL-RTLVSKGVMVTYGGM  315 (405)
Q Consensus       292 g~~~~~~~~-~~l~~~G~~v~~g~~  315 (405)
                      +.+...... ....++.+++..+..
T Consensus        73 p~~~s~~~~~~~~~~g~~VID~Ss~   97 (144)
T d2hjsa1          73 AAEVSRAHAERARAAGCSVIDLSGA   97 (144)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEETTCT
T ss_pred             CcchhhhhccccccCCceEEeechh
Confidence            988776654 555667777776643

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=89.49  E-value=0.2  Score=42.13  Aligned_cols=100  Identities=13%  Similarity=0.111  Sum_probs=56.6

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCc-EE-eChhhHHHHhhhcCCCCCcEE
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGAD-YV-FTEEELRNISRDASIPKPKLA  287 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~-~v-~~~~d~~~i~~~t~g~g~Dvv  287 (405)
                      -+++|++||=.|+  |.|..+..+++.-..+++++--+++..+...+.+++.+.. .+ +-..|... ........+|+|
T Consensus        21 ~~~~~~~VLDlGC--G~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~-~~~~~~~~fD~V   97 (252)
T d1ri5a_          21 YTKRGDSVLDLGC--GKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYG-RHMDLGKEFDVI   97 (252)
T ss_dssp             HCCTTCEEEEETC--TTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTT-SCCCCSSCEEEE
T ss_pred             hCCCcCEEEEecc--cCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhh-hcccccccceEE
Confidence            3579999999999  3466677777764456777765544433333444445432 22 11111111 001114569999


Q ss_pred             EECCCch-----------hHHHHHHhcccCCEEEEE
Q psy2960         288 LNCVGGN-----------SATNLLRTLVSKGVMVTY  312 (405)
Q Consensus       288 ld~~g~~-----------~~~~~~~~l~~~G~~v~~  312 (405)
                      +....-.           .+....+.|+|||.++..
T Consensus        98 ~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_          98 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             EEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            8654322           123345889999998764

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=89.24  E-value=0.32  Score=39.94  Aligned_cols=98  Identities=13%  Similarity=0.178  Sum_probs=57.3

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHH---cCCcEEEEecCCcchHHHHHHHHHcCCcEEe--ChhhHHHHhhhcCCCCC
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARH---WGLKTINIVRNRDDIDKLKSYLKSLGADYVF--TEEELRNISRDASIPKP  284 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~---~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~--~~~d~~~i~~~t~g~g~  284 (405)
                      .++++.+||=.|+  |.|..+..+++.   .+++++++--|.+..+...+.+.+.+....+  ...|.   ... ....+
T Consensus        36 ~~~~~~~vLDlGC--GtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~---~~~-~~~~~  109 (225)
T d1im8a_          36 FVTADSNVYDLGC--SRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDI---RHV-EIKNA  109 (225)
T ss_dssp             HCCTTCEEEEESC--TTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCT---TTC-CCCSE
T ss_pred             hcCCCCEEEEecc--chhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchh---hcc-ccccc
Confidence            3689999999998  568888888886   4788888854444333323333333432111  11111   111 12345


Q ss_pred             cEEEECCCc---------hhHHHHHHhcccCCEEEEEe
Q psy2960         285 KLALNCVGG---------NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       285 Dvvld~~g~---------~~~~~~~~~l~~~G~~v~~g  313 (405)
                      |+++-+..-         ..+....+.|+|+|.++..-
T Consensus       110 d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~  147 (225)
T d1im8a_         110 SMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSE  147 (225)
T ss_dssp             EEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccc
Confidence            766654331         12345679999999998753

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=89.24  E-value=0.72  Score=32.37  Aligned_cols=73  Identities=12%  Similarity=0.069  Sum_probs=49.4

Q ss_pred             CCCCCCEEEEeCCCcHHHHHH-HHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEE
Q psy2960         210 SLSPGDVVIQNGANSACGQNV-IQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLAL  288 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~a-iqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvl  288 (405)
                      .++..++|.+.|. ||+|+.+ +++++..|++|...-...   ....+.+.+.|......... ..+      .+.|+|+
T Consensus         4 ~~~~~~~ihfiGi-gG~GMs~LA~~L~~~G~~VsGSD~~~---~~~~~~L~~~Gi~v~~g~~~-~~i------~~~d~vV   72 (96)
T d1p3da1           4 EMRRVQQIHFIGI-GGAGMSGIAEILLNEGYQISGSDIAD---GVVTQRLAQAGAKIYIGHAE-EHI------EGASVVV   72 (96)
T ss_dssp             CCTTCCEEEEETT-TSTTHHHHHHHHHHHTCEEEEEESCC---SHHHHHHHHTTCEEEESCCG-GGG------TTCSEEE
T ss_pred             cchhCCEEEEEEE-CHHHHHHHHHHHHhCCCEEEEEeCCC---ChhhhHHHHCCCeEEECCcc-ccC------CCCCEEE
Confidence            3456789999999 8999887 799999999988775432   23356667788864432221 112      3568888


Q ss_pred             ECCCc
Q psy2960         289 NCVGG  293 (405)
Q Consensus       289 d~~g~  293 (405)
                      =+.+-
T Consensus        73 ~S~AI   77 (96)
T d1p3da1          73 VSSAI   77 (96)
T ss_dssp             ECTTS
T ss_pred             ECCCc
Confidence            76663

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=88.86  E-value=1.1  Score=34.60  Aligned_cols=88  Identities=11%  Similarity=-0.004  Sum_probs=53.6

Q ss_pred             EEEEeCCCcHHHHH-HHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCCc
Q psy2960         216 VVIQNGANSACGQN-VIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGG  293 (405)
Q Consensus       216 ~VLI~ga~G~vG~~-aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~  293 (405)
                      +|.|.|+ |.+|.- .+...+.. +++++++++.....  ..+..+.++... ++  +++++.     ..+|+|+-|+..
T Consensus         3 ri~iIG~-G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~--~~~~~~~~~~~~-~~--~~~~l~-----~~~D~V~I~tp~   71 (164)
T d1tlta1           3 RIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTRAK--ALPICESWRIPY-AD--SLSSLA-----ASCDAVFVHSST   71 (164)
T ss_dssp             EEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSCTT--HHHHHHHHTCCB-CS--SHHHHH-----TTCSEEEECSCT
T ss_pred             EEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEEechhHh--hhhhhhcccccc-cc--cchhhh-----hhcccccccccc
Confidence            5889998 888863 56655544 78888888665432  335556677652 22  222221     247999998876


Q ss_pred             hhH-HHHHHhcccCCEEEEEecc
Q psy2960         294 NSA-TNLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       294 ~~~-~~~~~~l~~~G~~v~~g~~  315 (405)
                      ..- ..+..++.. |.=+.+-.+
T Consensus        72 ~~h~~~~~~al~~-gk~V~~EKP   93 (164)
T d1tlta1          72 ASHFDVVSTLLNA-GVHVCVDKP   93 (164)
T ss_dssp             THHHHHHHHHHHT-TCEEEEESS
T ss_pred             hhccccccccccc-cceeecccc
Confidence            543 444555555 455666643

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=88.85  E-value=0.6  Score=36.91  Aligned_cols=93  Identities=13%  Similarity=0.190  Sum_probs=53.8

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCCch
Q psy2960         216 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGN  294 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~~  294 (405)
                      +|.|.||+|-+|+-.++++... ..++..++++...-+...+..+.+-.+..+...+.+.+.+     +.|++|-|++..
T Consensus         3 kVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~-----~~dvvf~a~p~~   77 (176)
T d1vkna1           3 RAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSK-----NCDVLFTALPAG   77 (176)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHH-----HCSEEEECCSTT
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhcc-----ccceEEEccccH
Confidence            6899999999999999888765 4566666543322111122222332222222222222221     469999999987


Q ss_pred             hHHHHHHhcccCCEEEEEec
Q psy2960         295 SATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       295 ~~~~~~~~l~~~G~~v~~g~  314 (405)
                      ........ ..+-+++.++.
T Consensus        78 ~s~~~~~~-~~~~~VIDlSa   96 (176)
T d1vkna1          78 ASYDLVRE-LKGVKIIDLGA   96 (176)
T ss_dssp             HHHHHHTT-CCSCEEEESSS
T ss_pred             HHHHHHHh-hccceEEecCc
Confidence            76655443 35667776654

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=88.74  E-value=0.44  Score=37.19  Aligned_cols=88  Identities=18%  Similarity=0.200  Sum_probs=58.3

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCc--EEe--------ChhhHHHHhhhcCCCCC
Q psy2960         216 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGAD--YVF--------TEEELRNISRDASIPKP  284 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~--~v~--------~~~d~~~i~~~t~g~g~  284 (405)
                      +|.|+|++|-+|++.++.+... ++++++.+.++..        ..+|.+  .+.        ...+.+.+     -..+
T Consensus         6 kI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~--------~~~g~d~~~~~~~~~~~~~~~~~~~~~-----~~~~   72 (162)
T d1diha1           6 RVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGS--------SLLGSDAGELAGAGKTGVTVQSSLDAV-----KDDF   72 (162)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTC--------TTCSCCTTCSSSSSCCSCCEESCSTTT-----TTSC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccc--------hhccchhhhhhccccCCceeeccHHHH-----hccc
Confidence            6899999999999999988765 7787777644321        011111  000        01111111     2357


Q ss_pred             cEEEECCCchhHHHHHHhcccCCEEEEEeccC
Q psy2960         285 KLALNCVGGNSATNLLRTLVSKGVMVTYGGMS  316 (405)
Q Consensus       285 Dvvld~~g~~~~~~~~~~l~~~G~~v~~g~~~  316 (405)
                      |+++|.+-.+.+...++...+.|.=+.+|...
T Consensus        73 DViIDFs~p~~~~~~~~~a~~~~~~~ViGTTG  104 (162)
T d1diha1          73 DVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTG  104 (162)
T ss_dssp             SEEEECSCHHHHHHHHHHHHHTTCEEEECCCC
T ss_pred             ceEEEeccHHHHHHHHHHHHhccceeEEecCC
Confidence            99999998888888888888888878888543

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.59  E-value=0.4  Score=42.02  Aligned_cols=33  Identities=15%  Similarity=0.231  Sum_probs=30.3

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEec
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVR  246 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~  246 (405)
                      -++|||+||+|-+|...+..+...|.+|+++.+
T Consensus        16 ~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~   48 (341)
T d1sb8a_          16 PKVWLITGVAGFIGSNLLETLLKLDQKVVGLDN   48 (341)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            368999999999999999999999999999864

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=88.56  E-value=0.2  Score=38.58  Aligned_cols=90  Identities=12%  Similarity=0.158  Sum_probs=49.9

Q ss_pred             EEEEeCCCcHHHHHHHHHHHH----cCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECC
Q psy2960         216 VVIQNGANSACGQNVIQIARH----WGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCV  291 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~----~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~  291 (405)
                      +|.|.||+|-+|+-.++++..    -..+....+++...-     ....++.+.......... ..   -..+|+||-|+
T Consensus         2 KVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~g-----k~~~~~~~~~~~~~~~~~-~~---~~~~DvvF~al   72 (147)
T d1mb4a1           2 RVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGV-----PAPNFGKDAGMLHDAFDI-ES---LKQLDAVITCQ   72 (147)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSS-----BCCCSSSCCCBCEETTCH-HH---HTTCSEEEECS
T ss_pred             EEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccc-----cccccCCcceeeecccch-hh---hccccEEEEec
Confidence            689999999999999986542    235555554443210     011122111111111111 01   13679999999


Q ss_pred             CchhHHHHHHhcccCC---EEEEEec
Q psy2960         292 GGNSATNLLRTLVSKG---VMVTYGG  314 (405)
Q Consensus       292 g~~~~~~~~~~l~~~G---~~v~~g~  314 (405)
                      +.+........+...|   .++..+.
T Consensus        73 p~~~s~~~~~~l~~~g~~~~VIDlSs   98 (147)
T d1mb4a1          73 GGSYTEKVYPALRQAGWKGYWIDAAS   98 (147)
T ss_dssp             CHHHHHHHHHHHHHTTCCSEEEESSS
T ss_pred             CchHHHHHhHHHHHcCCceEEEeCCc
Confidence            9988877665444444   3666654

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=88.54  E-value=0.46  Score=40.02  Aligned_cols=35  Identities=14%  Similarity=0.153  Sum_probs=31.8

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecC
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN  247 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~  247 (405)
                      -.|.+|+|.|. |.||..+++.+...|++++++.++
T Consensus        34 l~g~~v~IQGf-GnVG~~~a~~L~e~GakvvavsD~   68 (255)
T d1bgva1          34 LVGKTVALAGF-GNVAWGAAKKLAELGAKAVTLSGP   68 (255)
T ss_dssp             STTCEEEECCS-SHHHHHHHHHHHHHTCEEEEEEET
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEecC
Confidence            37899999998 999999999999999999998753

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.54  E-value=0.22  Score=40.92  Aligned_cols=97  Identities=16%  Similarity=0.232  Sum_probs=54.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHc--CCcEEEEecCCcchHHHHHHHHHcCCcE-E-e---ChhhHHH-HhhhcCCCCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHW--GLKTINIVRNRDDIDKLKSYLKSLGADY-V-F---TEEELRN-ISRDASIPKP  284 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~--G~~v~~~~~~~~~~~~~~~~~~~lg~~~-v-~---~~~d~~~-i~~~t~g~g~  284 (405)
                      ..++||=.|.  +.|..++.+|+++  +.+++++-.+++..+...+.+...|... | +   +..+... +.+......+
T Consensus        56 kpk~ILEiGt--~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~  133 (214)
T d2cl5a1          56 SPSLVLELGA--YCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL  133 (214)
T ss_dssp             CCSEEEEECC--TTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCE
T ss_pred             CCCEEEEEcc--CchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccccccc
Confidence            4478999997  5688888999886  5667766544333333444455666532 2 1   2233222 3333334568


Q ss_pred             cEEEECCCchh------HHHHHHhcccCCEEEE
Q psy2960         285 KLALNCVGGNS------ATNLLRTLVSKGVMVT  311 (405)
Q Consensus       285 Dvvld~~g~~~------~~~~~~~l~~~G~~v~  311 (405)
                      |+|+--...+.      +..++++|+|||.++.
T Consensus       134 D~ifiD~~~~~~~~~~~l~~~~~lLkpGGvIv~  166 (214)
T d2cl5a1         134 DMVFLDHWKDRYLPDTLLLEKCGLLRKGTVLLA  166 (214)
T ss_dssp             EEEEECSCGGGHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             ceeeecccccccccHHHHHHHhCccCCCcEEEE
Confidence            98774332221      2234567899886543

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=88.44  E-value=0.64  Score=33.78  Aligned_cols=34  Identities=21%  Similarity=0.069  Sum_probs=29.7

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      .++|+|.|+ |.+|+-+++.++.+|.+|..+-+.+
T Consensus        21 p~~vvIiGg-G~ig~E~A~~l~~~G~~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGA-GYIGVELGGVINGLGAKTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEECC-ChhhHHHHHHhhccccEEEEEeecc
Confidence            478999999 9999999999999999988776543

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=88.02  E-value=0.65  Score=34.15  Aligned_cols=42  Identities=19%  Similarity=0.047  Sum_probs=33.7

Q ss_pred             HHhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecC
Q psy2960         205 LKDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN  247 (405)
Q Consensus       205 l~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~  247 (405)
                      +.+...-..+++|+|.|+ |.+|+-+++.+..+|.+|..+-+.
T Consensus        21 i~~~~~~~~~k~vvViGg-G~iG~E~A~~l~~~g~~Vtlie~~   62 (123)
T d1nhpa2          21 LKQKTVDPEVNNVVVIGS-GYIGIEAAEAFAKAGKKVTVIDIL   62 (123)
T ss_dssp             HHHHHTCTTCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             HHHHhhccCCCEEEEECC-hHHHHHHHHHhhccceEEEEEEec
Confidence            334344456789999999 999999999999999998887544

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=87.99  E-value=0.7  Score=39.17  Aligned_cols=74  Identities=15%  Similarity=0.162  Sum_probs=44.7

Q ss_pred             EEEeCCCcHHHHHHHHHHHHcCCc-EEEEecCCcchHHHHHHHHHcCCcEEeChhhHHH-HhhhcCCCCCcEEEECCC
Q psy2960         217 VIQNGANSACGQNVIQIARHWGLK-TINIVRNRDDIDKLKSYLKSLGADYVFTEEELRN-ISRDASIPKPKLALNCVG  292 (405)
Q Consensus       217 VLI~ga~G~vG~~aiqla~~~G~~-v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~-i~~~t~g~g~Dvvld~~g  292 (405)
                      |||+||+|-+|...+..+...|.. |+++ +.-... .+.....+.-.....+..+... +........+++++-+.+
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~-d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~aa   77 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVV-DNLKDG-TKFVNLVDLNIADYMDKEDFLIQIMAGEEFGDVEAIFHEGA   77 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEE-ECCSSG-GGGHHHHTSCCSEEEEHHHHHHHHHTTCCCSSCCEEEECCS
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEE-ECCCCc-chhhcccccchhhhccchHHHHHHhhhhcccchhhhhhhcc
Confidence            899999999999999888888974 5554 211111 1122334554445555555444 443333456788886654

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=87.94  E-value=0.71  Score=40.03  Aligned_cols=94  Identities=11%  Similarity=0.095  Sum_probs=57.3

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC---c-------EEeChhhHHH-HhhhcCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA---D-------YVFTEEELRN-ISRDASI  281 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~---~-------~v~~~~d~~~-i~~~t~g  281 (405)
                      ..++|||.|+  |-|..+-.++++...+.+.++   |..+.-.+.+++.-.   .       .++ ..|..+ +++.  .
T Consensus       106 ~pk~VLIiGg--G~G~~~rellk~~~v~~v~~V---EID~~Vv~~a~~~~~~~~~~~~dprv~i~-i~Da~~~l~~~--~  177 (312)
T d2b2ca1         106 DPKRVLIIGG--GDGGILREVLKHESVEKVTMC---EIDEMVIDVAKKFLPGMSCGFSHPKLDLF-CGDGFEFLKNH--K  177 (312)
T ss_dssp             SCCEEEEESC--TTSHHHHHHTTCTTCCEEEEE---CSCHHHHHHHHHHCTTTSGGGGCTTEEEE-CSCHHHHHHHC--T
T ss_pred             CCCeEEEeCC--CchHHHHHHHHcCCcceEEEE---cccHHHHHHHHhhchhhccccCCCCeEEE-EchHHHHHHhC--C
Confidence            4578999997  446777788888887777777   433445666655321   1       111 123333 5442  5


Q ss_pred             CCCcEEEECCC-----------chhHHHHHHhcccCCEEEEEec
Q psy2960         282 PKPKLALNCVG-----------GNSATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       282 ~g~Dvvld~~g-----------~~~~~~~~~~l~~~G~~v~~g~  314 (405)
                      ..+|+||--+.           .+....+-++|+++|.++.-+.
T Consensus       178 ~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~  221 (312)
T d2b2ca1         178 NEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQGE  221 (312)
T ss_dssp             TCEEEEEECCC-------------HHHHHHHHEEEEEEEEEECC
T ss_pred             CCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence            67999884221           1233455689999999988653

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=87.58  E-value=0.24  Score=42.08  Aligned_cols=31  Identities=19%  Similarity=0.145  Sum_probs=28.0

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEe
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIV  245 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~  245 (405)
                      |++|+|+|| |..|++|+..++..|.+|.+.=
T Consensus         1 ~KkV~IIGa-G~aGL~aA~~La~~G~~V~vlE   31 (373)
T d1seza1           1 AKRVAVIGA-GVSGLAAAYKLKIHGLNVTVFE   31 (373)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTSCEEEEEC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCCEEEEe
Confidence            678999999 9999999999999999887773

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.54  E-value=0.56  Score=34.65  Aligned_cols=33  Identities=21%  Similarity=0.200  Sum_probs=30.0

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      ++|+|.|+ |.+|+-+++.++.+|.+|..+.+++
T Consensus        23 k~vvIvGg-G~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          23 GRSVIVGA-GYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             SEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CEEEEEcC-CccHHHHHHHHhcCCcEEEEEeecc
Confidence            78999999 9999999999999999998887653

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=87.28  E-value=0.25  Score=33.36  Aligned_cols=33  Identities=15%  Similarity=0.140  Sum_probs=29.4

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      ++|.|.|+ |-+|.+.++-|+.+|.++.+.....
T Consensus         2 k~vgIlG~-GQLgrMl~~Aa~~LG~~v~vldp~~   34 (78)
T d3etja2           2 KQVCVLGN-GQLGRMLRQAGEPLGIAVWPVGLDA   34 (78)
T ss_dssp             EEEEEEBC-SHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred             CEEEEEcC-CHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            47999999 9999999999999999999887443

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.94  E-value=0.51  Score=40.49  Aligned_cols=94  Identities=10%  Similarity=0.069  Sum_probs=56.3

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcC----------CcEEeChhhHHH-HhhhcC
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG----------ADYVFTEEELRN-ISRDAS  280 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg----------~~~v~~~~d~~~-i~~~t~  280 (405)
                      ..-++|||.|+  |-|..+-.++++.+...+.++   |-.+.-.+.+++.-          --.++ ..|..+ +.+ + 
T Consensus        77 ~~pk~vLiiGg--G~G~~~~~~l~~~~~~~v~~v---EiD~~Vv~~a~~~~~~~~~~~~d~rv~i~-~~Da~~~l~~-~-  148 (285)
T d2o07a1          77 PNPRKVLIIGG--GDGGVLREVVKHPSVESVVQC---EIDEDVIQVSKKFLPGMAIGYSSSKLTLH-VGDGFEFMKQ-N-  148 (285)
T ss_dssp             SSCCEEEEEEC--TTSHHHHHHTTCTTCCEEEEE---ESCHHHHHHHHHHCHHHHGGGGCTTEEEE-ESCHHHHHHT-C-
T ss_pred             cCcCeEEEeCC--CchHHHHHHHHcCCcceeeec---cCCHHHHHHHHhhchhhccccCCCCceEE-EccHHHHHhc-C-
Confidence            34589999997  446777788888888777777   33344455554421          11222 123233 443 2 


Q ss_pred             CCCCcEEE-ECCC----------chhHHHHHHhcccCCEEEEEe
Q psy2960         281 IPKPKLAL-NCVG----------GNSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       281 g~g~Dvvl-d~~g----------~~~~~~~~~~l~~~G~~v~~g  313 (405)
                      ...+|+|+ |...          .+.....-++|+++|.++.-.
T Consensus       149 ~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  192 (285)
T d2o07a1         149 QDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  192 (285)
T ss_dssp             SSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence            45799977 4332          123445568999999998755

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=86.87  E-value=0.23  Score=42.96  Aligned_cols=31  Identities=13%  Similarity=0.160  Sum_probs=27.6

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEe
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIV  245 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~  245 (405)
                      ++|||+||+|-+|...+..+...|..++++.
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~~vi~~~   33 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLR   33 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTEEEECC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcCEEEEec
Confidence            4899999999999999999988899887664

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=86.83  E-value=1.6  Score=35.11  Aligned_cols=96  Identities=14%  Similarity=0.039  Sum_probs=58.8

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEEe-ChhhHHHHhhhcCCCCCcEEEECCC
Q psy2960         215 DVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKLALNCVG  292 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~-~~~d~~~i~~~t~g~g~Dvvld~~g  292 (405)
                      -.||=.|+  |.|..++.+|+.. ...++++--+........+.+++.|.+++. -..|...+.+......+|.|+-...
T Consensus        31 PlvLeIGc--G~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp  108 (204)
T d2fcaa1          31 PIHIEVGT--GKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS  108 (204)
T ss_dssp             CEEEEECC--TTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             ceEEEEEe--cCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc
Confidence            35677777  6799999999987 555665543433444455666777876442 2223222333344556787664432


Q ss_pred             c---------------hhHHHHHHhcccCCEEEEE
Q psy2960         293 G---------------NSATNLLRTLVSKGVMVTY  312 (405)
Q Consensus       293 ~---------------~~~~~~~~~l~~~G~~v~~  312 (405)
                      .               +.+....+.|+|||.+...
T Consensus       109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~  143 (204)
T d2fcaa1         109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK  143 (204)
T ss_dssp             CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred             cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence            2               2345567999999998765

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=86.67  E-value=2.1  Score=37.12  Aligned_cols=103  Identities=9%  Similarity=0.028  Sum_probs=64.1

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHH-cCCcE-EEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEE
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARH-WGLKT-INIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALN  289 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~-~G~~v-~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld  289 (405)
                      +.-.++.|.|+ |..+...++.... ...+. .+..++.+..+...+.++..+.....+..+.  +      .+.|+|+-
T Consensus       123 ~~~~~l~iiGa-G~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a--~------~~aDiV~t  193 (320)
T d1omoa_         123 KNSSVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEE--A------SRCDVLVT  193 (320)
T ss_dssp             TTCCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHH--H------TSSSEEEE
T ss_pred             CCccEEEEecC-cccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhh--h------ccccEEEE
Confidence            34478999998 8998887776654 46644 4444454444555566667776655543321  2      35799999


Q ss_pred             CCCchhHHHHHHhcccCCEEEEEeccCCCCcccC
Q psy2960         290 CVGGNSATNLLRTLVSKGVMVTYGGMSREPVQIP  323 (405)
Q Consensus       290 ~~g~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~  323 (405)
                      |+.+..-.--.+.+++|-.+..+|........++
T Consensus       194 aT~s~~P~~~~~~l~~G~hv~~iGs~~p~~~Eld  227 (320)
T d1omoa_         194 TTPSRKPVVKAEWVEEGTHINAIGADGPGKQELD  227 (320)
T ss_dssp             CCCCSSCCBCGGGCCTTCEEEECSCCSTTCCCBC
T ss_pred             eccCcccccchhhcCCCCeEeecCCccccccccC
Confidence            8875322112356899999999986544333444

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.62  E-value=0.41  Score=41.09  Aligned_cols=34  Identities=12%  Similarity=0.257  Sum_probs=31.2

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN  247 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~  247 (405)
                      .|.+|+|.|- |.||..+++.+...|++++++..+
T Consensus        35 ~gktvaIqGf-GnVG~~~A~~L~e~Gakvv~vsD~   68 (293)
T d1hwxa1          35 GDKTFAVQGF-GNVGLHSMRYLHRFGAKCVAVGES   68 (293)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEcc
Confidence            6899999999 999999999999999999998743

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=86.61  E-value=1  Score=32.94  Aligned_cols=35  Identities=11%  Similarity=0.023  Sum_probs=31.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      ..++++|.|+ |-+|+=++++...+|++|..+-+++
T Consensus        24 ~p~~~viiG~-G~iglE~A~~~~~~G~~Vtvi~~~~   58 (123)
T d1dxla2          24 IPKKLVVIGA-GYIGLEMGSVWGRIGSEVTVVEFAS   58 (123)
T ss_dssp             CCSEEEESCC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             cCCeEEEEcc-chHHHHHHHHHHhcCCeEEEEEEcc
Confidence            4589999999 9999999999999999998886554

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=86.59  E-value=4.2  Score=31.35  Aligned_cols=95  Identities=14%  Similarity=0.065  Sum_probs=56.4

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCC-------cEE-------e--------ChhhH
Q psy2960         216 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGA-------DYV-------F--------TEEEL  272 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~-------~~v-------~--------~~~d~  272 (405)
                      +|.|.|- |-+|.++...+... ..+++++-.+.-. .+.+..+.+...       +..       +        ..++.
T Consensus         2 kigINGf-GRIGR~v~R~~~~~~~~~iv~INd~~~d-~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~p   79 (166)
T d2b4ro1           2 KLGINGF-GRIGRLVFRAAFGRKDIEVVAINDPFMD-LNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKDP   79 (166)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTCSSEEEEEEECTTCC-HHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSSG
T ss_pred             eEEEECC-CHHHHHHHHHHhhCCCcEEEEECCCCCC-hHHhhhhhhcccccccceeeeccCCceEEecCcEEEEEeCCCh
Confidence            6889999 99999999988765 4566666543222 233444433321       111       1        11223


Q ss_pred             HH--HhhhcCCCCCcEEEECCCchhHH-HHHHhcccCCEEEEEeccC
Q psy2960         273 RN--ISRDASIPKPKLALNCVGGNSAT-NLLRTLVSKGVMVTYGGMS  316 (405)
Q Consensus       273 ~~--i~~~t~g~g~Dvvld~~g~~~~~-~~~~~l~~~G~~v~~g~~~  316 (405)
                      .+  ..+    .++|+|+||+|.-... .+...+..+-+-|.+..+.
T Consensus        80 ~~i~W~~----~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~  122 (166)
T d2b4ro1          80 SQIPWGK----CQVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPP  122 (166)
T ss_dssp             GGCCHHH----HTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC
T ss_pred             HHccccc----cCCCEEEEecccccchhhhhhhhccCCCEEEEeccc
Confidence            33  222    3799999999975554 3456777776666666443

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=86.38  E-value=0.37  Score=40.19  Aligned_cols=33  Identities=21%  Similarity=0.203  Sum_probs=29.1

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEec
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVR  246 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~  246 (405)
                      ..++|+|.|| |..|++++..++..|.+|++.-+
T Consensus         3 ~~~kV~IiGa-G~aGl~~A~~L~~~G~~v~v~Er   35 (265)
T d2voua1           3 TTDRIAVVGG-SISGLTAALMLRDAGVDVDVYER   35 (265)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCcEEEECc-CHHHHHHHHHHHHCCCCEEEEeC
Confidence            3589999999 99999999999999999888754

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=86.33  E-value=0.89  Score=38.64  Aligned_cols=94  Identities=17%  Similarity=0.192  Sum_probs=57.3

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc-----CC-----cEEeChhhHHH-HhhhcC
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL-----GA-----DYVFTEEELRN-ISRDAS  280 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l-----g~-----~~v~~~~d~~~-i~~~t~  280 (405)
                      ...++|||.|+  |-|..+-.++++.+.+.+.++.-   .+.-.+.+++.     ++     -.++. .|... +++.  
T Consensus        74 ~~p~~vLiiGg--G~G~~~~~~l~~~~~~~i~~VEI---D~~Vi~~a~~~~~~~~~~~~d~r~~i~~-~D~~~~l~~~--  145 (274)
T d1iy9a_          74 PNPEHVLVVGG--GDGGVIREILKHPSVKKATLVDI---DGKVIEYSKKFLPSIAGKLDDPRVDVQV-DDGFMHIAKS--  145 (274)
T ss_dssp             SSCCEEEEESC--TTCHHHHHHTTCTTCSEEEEEES---CHHHHHHHHHHCHHHHTTTTSTTEEEEE-SCSHHHHHTC--
T ss_pred             CCcceEEecCC--CCcHHHHHHHhcCCcceEEEecC---CHHHHHHHHHhChhhcccccCCCeEEEe-chHHHHHhhc--
Confidence            34589999997  44777788888888877777733   33444555443     11     11221 23223 4432  


Q ss_pred             CCCCcEEEE-CCC----------chhHHHHHHhcccCCEEEEEe
Q psy2960         281 IPKPKLALN-CVG----------GNSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       281 g~g~Dvvld-~~g----------~~~~~~~~~~l~~~G~~v~~g  313 (405)
                      ...+|+|+- ...          .+......++|+++|.++.-.
T Consensus       146 ~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~  189 (274)
T d1iy9a_         146 ENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (274)
T ss_dssp             CSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence            467999873 221          234556678999999998754

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.32  E-value=0.85  Score=39.13  Aligned_cols=94  Identities=14%  Similarity=0.109  Sum_probs=56.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcC---------C-cEEeChhhHHH-HhhhcCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLG---------A-DYVFTEEELRN-ISRDASI  281 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg---------~-~~v~~~~d~~~-i~~~t~g  281 (405)
                      .-++|||.|+  |-|..+-.++++.+.+.+..+.-   .++-.+.+++.-         . -.++. .|... +.+. ..
T Consensus        80 ~pk~VLiiGg--G~G~~~r~~l~~~~~~~i~~VEi---D~~Vi~~~~~~f~~~~~~~~~~r~~i~~-~Da~~~l~~~-~~  152 (290)
T d1xj5a_          80 NPKKVLVIGG--GDGGVLREVARHASIEQIDMCEI---DKMVVDVSKQFFPDVAIGYEDPRVNLVI-GDGVAFLKNA-AE  152 (290)
T ss_dssp             CCCEEEEETC--SSSHHHHHHTTCTTCCEEEEEES---CHHHHHHHHHHCHHHHGGGGSTTEEEEE-SCHHHHHHTS-CT
T ss_pred             CCcceEEecC--CchHHHHHHHhcccceeeEEecC---CHHHHHHHHHhchhhhccccCCCcEEEE-ccHHHHHhhc-cc
Confidence            4479999997  34667778888888877777733   344455554431         1 11221 22222 4433 24


Q ss_pred             CCCcEEE-ECCC----------chhHHHHHHhcccCCEEEEEe
Q psy2960         282 PKPKLAL-NCVG----------GNSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       282 ~g~Dvvl-d~~g----------~~~~~~~~~~l~~~G~~v~~g  313 (405)
                      ..+|+|| |+..          .+.....-++|+++|.++.-.
T Consensus       153 ~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  195 (290)
T d1xj5a_         153 GSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA  195 (290)
T ss_dssp             TCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence            5799876 4432          123455678999999998754

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=86.24  E-value=0.63  Score=34.02  Aligned_cols=35  Identities=11%  Similarity=0.005  Sum_probs=31.0

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      ..++++|.|+ |.+|+=.++.+..+|++|..+.+++
T Consensus        21 ~p~~i~IiG~-G~ig~E~A~~l~~~G~~Vtiv~~~~   55 (119)
T d3lada2          21 VPGKLGVIGA-GVIGLELGSVWARLGAEVTVLEAMD   55 (119)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCeEEEECC-ChHHHHHHHHHHHcCCceEEEEeec
Confidence            3488999999 9999999999999999999887554

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=85.87  E-value=1.2  Score=34.65  Aligned_cols=82  Identities=13%  Similarity=0.186  Sum_probs=54.0

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCCch
Q psy2960         216 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGN  294 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~~  294 (405)
                      +|.|.|+ |.+|...+...+.. +++++++++..++.         .....+..+.+....     ...+|+|+.|++..
T Consensus         5 rvgiiG~-G~ig~~~~~~l~~~~~~elvav~~~~~~~---------~~~~~~~~~~~~~~~-----~~~~D~Vvi~tp~~   69 (170)
T d1f06a1           5 RVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATL---------DTKTPVFDVADVDKH-----ADDVDVLFLCMGSA   69 (170)
T ss_dssp             EEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCC---------SSSSCEEEGGGGGGT-----TTTCSEEEECSCTT
T ss_pred             eEEEECC-hHHHHHHHHHHHhCCCcEEEEEEeccccc---------ccccccccchhhhhh-----ccccceEEEeCCCc
Confidence            5899998 99998888777665 77888888655431         111223333333221     13589999999875


Q ss_pred             h-HHHHHHhcccCCEEEEE
Q psy2960         295 S-ATNLLRTLVSKGVMVTY  312 (405)
Q Consensus       295 ~-~~~~~~~l~~~G~~v~~  312 (405)
                      . ...+.++|..|-.++..
T Consensus        70 ~h~~~a~~aL~aG~~vv~~   88 (170)
T d1f06a1          70 TDIPEQAPKFAQFACTVDT   88 (170)
T ss_dssp             THHHHHHHHHTTTSEEECC
T ss_pred             ccHHHHHHHHHCCCcEEEe
Confidence            4 45677888888887643

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=85.62  E-value=0.5  Score=37.82  Aligned_cols=79  Identities=6%  Similarity=0.062  Sum_probs=50.2

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC-----------cEEeChhhHHHHhhhcCCCC
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA-----------DYVFTEEELRNISRDASIPK  283 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~-----------~~v~~~~d~~~i~~~t~g~g  283 (405)
                      .+|.|.|+ |..|.+.+.++...|.+|....++++.    .+...+-+.           +.+.-..+..+   .  -.+
T Consensus         8 ~KI~ViGa-G~wGtAlA~~La~~g~~V~l~~r~~~~----~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~---a--~~~   77 (189)
T d1n1ea2           8 NKAVVFGS-GAFGTALAMVLSKKCREVCVWHMNEEE----VRLVNEKRENVLFLKGVQLASNITFTSDVEK---A--YNG   77 (189)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTTEEEEEEECSCHHH----HHHHHHHTBCTTTSTTCBCCTTEEEESCHHH---H--HTT
T ss_pred             ceEEEECC-CHHHHHHHHHHHHcCCeEEEEEecHHH----HHHHhhcccccccccccccccccccchhhhh---c--cCC
Confidence            46999999 999999999998888888888765433    222222111           11111223333   1  124


Q ss_pred             CcEEEECCCchhHHHHHHhc
Q psy2960         284 PKLALNCVGGNSATNLLRTL  303 (405)
Q Consensus       284 ~Dvvld~~g~~~~~~~~~~l  303 (405)
                      .|+|+-++....+...++.+
T Consensus        78 ad~iiiavPs~~~~~~~~~~   97 (189)
T d1n1ea2          78 AEIILFVIPTQFLRGFFEKS   97 (189)
T ss_dssp             CSCEEECSCHHHHHHHHHHH
T ss_pred             CCEEEEcCcHHHHHHHHHHH
Confidence            69999999988776666544

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=85.53  E-value=0.74  Score=38.51  Aligned_cols=98  Identities=19%  Similarity=0.174  Sum_probs=58.5

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCC-cEE-eChhhHHHHhhhcCCCCCc
Q psy2960         209 NSLSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGA-DYV-FTEEELRNISRDASIPKPK  285 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~-~~v-~~~~d~~~i~~~t~g~g~D  285 (405)
                      ..+....+||=.|+  |.|..++.+++.. +++++++- .++..+...+.+.+.|. +.+ +-..|+   .+. ...++|
T Consensus        76 ~d~~~~~~VLDvGc--G~G~~~~~la~~~p~~~~~~~D-~~~~~~~a~~~~~~~~~~~rv~~~~~D~---~~~-~~~~~D  148 (253)
T d1tw3a2          76 YDWTNVRHVLDVGG--GKGGFAAAIARRAPHVSATVLE-MAGTVDTARSYLKDEGLSDRVDVVEGDF---FEP-LPRKAD  148 (253)
T ss_dssp             SCCTTCSEEEEETC--TTSHHHHHHHHHCTTCEEEEEE-CTTHHHHHHHHHHHTTCTTTEEEEECCT---TSC-CSSCEE
T ss_pred             cCCccCCEEEEeCC--CCCHHHHHHHHhcceeEEEEcc-CHHHHHHHHHHHHHhhcccchhhccccc---hhh-cccchh
Confidence            45677789999997  6789999999988 45555543 33333444444555543 222 111121   111 134689


Q ss_pred             EEEECC-----Cch----hHHHHHHhcccCCEEEEEe
Q psy2960         286 LALNCV-----GGN----SATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       286 vvld~~-----g~~----~~~~~~~~l~~~G~~v~~g  313 (405)
                      +|+-..     ..+    .+....+.|+|||+++.+-
T Consensus       149 ~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e  185 (253)
T d1tw3a2         149 AIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHE  185 (253)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             heeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEe
Confidence            988543     222    2345678899999998865

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=85.48  E-value=3.6  Score=31.87  Aligned_cols=97  Identities=15%  Similarity=0.078  Sum_probs=56.4

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCC-------cE-------EeCh--------hhH
Q psy2960         216 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGA-------DY-------VFTE--------EEL  272 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~-------~~-------v~~~--------~d~  272 (405)
                      +|.|.|- |-+|.++..++... ..+++++-......+. +..+.+...       +.       +++.        ++.
T Consensus         3 kIgINGF-GRIGR~v~R~~~~~~~~~ivaINd~~~~~~~-~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~p   80 (169)
T d1u8fo1           3 KVGVNGF-GRIGRLVTRAAFNSGKVDIVAINDPFIDLNY-MVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDP   80 (169)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHCSSEEEEEECSSSCHHH-HHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             EEEEECC-cHHHHHHHHHHHHCCCcEEEEecCCCccHHH-HHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEECCCh
Confidence            6899998 99999999877665 4677666543222233 333333211       11       1111        111


Q ss_pred             HHHhhhcCCCCCcEEEECCCchhHHH-HHHhcccCCEEEEEeccC
Q psy2960         273 RNISRDASIPKPKLALNCVGGNSATN-LLRTLVSKGVMVTYGGMS  316 (405)
Q Consensus       273 ~~i~~~t~g~g~Dvvld~~g~~~~~~-~~~~l~~~G~~v~~g~~~  316 (405)
                      .++.  ....++|+|+||+|.-.... +...+..+-+-+.+..+.
T Consensus        81 ~~i~--W~~~~vDiViEcTG~f~~~~~~~~hl~~gakkViiSaP~  123 (169)
T d1u8fo1          81 SKIK--WGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPS  123 (169)
T ss_dssp             GGCC--TTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCC
T ss_pred             hhCC--ccccCCCEEEEecceeccHHHHHHHHhcCCceEeecccc
Confidence            1110  11357999999999755444 446677777667776543

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.46  E-value=0.62  Score=34.27  Aligned_cols=33  Identities=21%  Similarity=0.191  Sum_probs=29.6

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRN  247 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~  247 (405)
                      .++++|.|| |.+|+=.+++++.+|++|..+.++
T Consensus        20 P~~vvIIGg-G~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          20 PGKTLVVGA-SYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECC-CccHHHHHHHHhhcCCeEEEEEec
Confidence            468999999 999999999999999999988643

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.03  E-value=0.44  Score=41.68  Aligned_cols=32  Identities=22%  Similarity=0.282  Sum_probs=29.3

Q ss_pred             EE-EEeCCCcHHHHHHHHHHHHcCCcEEEEecC
Q psy2960         216 VV-IQNGANSACGQNVIQIARHWGLKTINIVRN  247 (405)
Q Consensus       216 ~V-LI~ga~G~vG~~aiqla~~~G~~v~~~~~~  247 (405)
                      +| ||+||+|-+|...+..+...|.+|+++.+.
T Consensus         2 KI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~   34 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRR   34 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            57 999999999999999999999999999864

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.74  E-value=1.1  Score=32.77  Aligned_cols=35  Identities=17%  Similarity=0.085  Sum_probs=30.3

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecC
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN  247 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~  247 (405)
                      +.+.+|+|.|| |.+|+-+++.+..+|.+|..+.++
T Consensus        30 ~~~~~vvIiGg-G~iG~E~A~~l~~~g~~Vtlv~~~   64 (122)
T d1xhca2          30 ENSGEAIIIGG-GFIGLELAGNLAEAGYHVKLIHRG   64 (122)
T ss_dssp             HHHSEEEEEEC-SHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             hcCCcEEEECC-cHHHHHHHHHhhcccceEEEEecc
Confidence            34689999999 999999999999999999887644

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=84.58  E-value=0.42  Score=41.83  Aligned_cols=32  Identities=13%  Similarity=0.082  Sum_probs=27.0

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcC-CcEEEEecC
Q psy2960         216 VVIQNGANSACGQNVIQIARHWG-LKTINIVRN  247 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G-~~v~~~~~~  247 (405)
                      +|||+||+|-+|...++.+...| .+|+++...
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~   34 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIG   34 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            69999999999999998888888 577777543

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=84.53  E-value=0.63  Score=38.31  Aligned_cols=36  Identities=17%  Similarity=0.147  Sum_probs=31.3

Q ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecC
Q psy2960         211 LSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN  247 (405)
Q Consensus       211 ~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~  247 (405)
                      .+.+++|+|.|| |+.|+.++..++..|.++..+-.+
T Consensus        46 ~~~~k~VvIIGa-GpAGl~aA~~l~~~G~~v~l~E~~   81 (233)
T d1djqa3          46 TKNKDSVLIVGA-GPSGSEAARVLMESGYTVHLTDTA   81 (233)
T ss_dssp             CSSCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             ccCCceEEEEcc-cHHHHHHHHHHHHhccceeeEeec
Confidence            356799999999 999999999999999998888543

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=84.38  E-value=0.96  Score=39.24  Aligned_cols=93  Identities=18%  Similarity=0.193  Sum_probs=54.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHc------CC-----cEEeChhhHHH-HhhhcC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSL------GA-----DYVFTEEELRN-ISRDAS  280 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~l------g~-----~~v~~~~d~~~-i~~~t~  280 (405)
                      ..++|||.|+  |.|..+-+++++.....+.++   |..++-.+.+++.      ++     -.++ ..|..+ +.+ + 
T Consensus        77 ~pk~VLiiG~--G~G~~~~~ll~~~~~~~v~~V---EiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~-~~Da~~~l~~-~-  148 (312)
T d1uira_          77 EPKRVLIVGG--GEGATLREVLKHPTVEKAVMV---DIDGELVEVAKRHMPEWHQGAFDDPRAVLV-IDDARAYLER-T-  148 (312)
T ss_dssp             CCCEEEEEEC--TTSHHHHHHTTSTTCCEEEEE---ESCHHHHHHHHHHCHHHHTTGGGCTTEEEE-ESCHHHHHHH-C-
T ss_pred             CcceEEEeCC--CchHHHHHHHhcCCcceEEEe---cCCHHHHHHHHhcCcccccCccCCCceEEE-EchHHHHhhh-c-
Confidence            4579999998  447777788888766666666   3334444544432      11     1222 123333 443 2 


Q ss_pred             CCCCcEEE-ECC---Cc----------hhHHHHHHhcccCCEEEEEe
Q psy2960         281 IPKPKLAL-NCV---GG----------NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       281 g~g~Dvvl-d~~---g~----------~~~~~~~~~l~~~G~~v~~g  313 (405)
                      ...+|+|| |..   +.          +....+.++|+++|.++.-.
T Consensus       149 ~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~  195 (312)
T d1uira_         149 EERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (312)
T ss_dssp             CCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence            46799987 432   21          23345678999999987644

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.33  E-value=2.5  Score=37.14  Aligned_cols=105  Identities=19%  Similarity=0.249  Sum_probs=71.6

Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeCh-----------------
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE-----------------  269 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~-----------------  269 (405)
                      ..+.+++++.|....+ |..|.+.+..|+.+|.+.++++.. ...+.+.+.++.+|++.+...                 
T Consensus        90 ~~g~~~~~~~vv~aSs-GN~g~a~A~~a~~~Gi~~~iv~p~-~~~~~k~~~i~~~GA~vv~v~~~~~~~~~~~~~~~~~~  167 (355)
T d1jbqa_          90 RDGTLKPGDTIIEPTS-GNTGIGLALAAAVRGYRCIIVMPE-KMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWR  167 (355)
T ss_dssp             HHTCSCTTCEEEEECS-SHHHHHHHHHHHHHTCEEEEEECS-CCCHHHHHHHHHTTCEEEECCC-------CCHHHHHHH
T ss_pred             HcCCcccCceEEEecc-cchhhHHHHHHHhccCCeEEEeec-cchHHHHHHHHhcCCeEEEecccccchhhhhhhhHHHH
Confidence            3366777776655554 999999999999999998888754 345778899999999866410                 


Q ss_pred             ---------------h--hH--------HHHhhhcCCCCCcEEEECCCchhHHH----HHHhcccCCEEEEEec
Q psy2960         270 ---------------E--EL--------RNISRDASIPKPKLALNCVGGNSATN----LLRTLVSKGVMVTYGG  314 (405)
Q Consensus       270 ---------------~--d~--------~~i~~~t~g~g~Dvvld~~g~~~~~~----~~~~l~~~G~~v~~g~  314 (405)
                                     .  +.        .++.+.+ +..+|.|+-++|+-.+..    .++...+.-+++.+..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~ag~~t~~~EI~~ql-~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~kii~vep  240 (355)
T d1jbqa_         168 LKNEIPNSHILDQYRNASNPLAHYDTTADEILQQC-DGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDP  240 (355)
T ss_dssp             HHHHSTTEECCCTTTCTHHHHHHHHTHHHHHHHHH-TTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEE
T ss_pred             HHHhccccccccccCcccchhhhcccchhhhhhhc-CCCCCeeEecccCCchHHHHHHHHhhcCCcceEEeecc
Confidence                           0  00        0122222 235899999998754432    3566677888887653

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=83.96  E-value=2.7  Score=35.61  Aligned_cols=104  Identities=14%  Similarity=0.250  Sum_probs=69.0

Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeCh--h--------------
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTE--E--------------  270 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~--~--------------  270 (405)
                      +.+.++++.+|....+ |.-|++++..|+.+|.+.++++... ..+.+.+.++.+|++.++..  .              
T Consensus        53 ~~g~~~~~~~vv~aSs-GN~g~a~A~~a~~~G~~~~i~~p~~-~~~~k~~~~~~~GA~v~~v~~~~~~~~a~~~~~~~~~  130 (292)
T d2bhsa1          53 KRGEIKPGDVLIEATS-GNTGIALAMIAALKGYRMKLLMPDN-MSQERRAAMRAYGAELILVTKEQGMEGARDLALEMAN  130 (292)
T ss_dssp             HTTSCCTTSEEEEECC-SHHHHHHHHHHHHHTCEEEEEEESC-CCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHH
T ss_pred             HhCCcCCCceeeeecc-cchhHHHHHHHHhcCcceEeeeccC-chhhhhHHHHHhCCCcceeecccchHHHHHHHhhccc
Confidence            3356666766555555 9999999999999999988888553 34677888999999755410  0              


Q ss_pred             -----------h---H--------HHHhhhcCCCCCcEEEECCCchhHH----HHHHhcccCCEEEEEe
Q psy2960         271 -----------E---L--------RNISRDASIPKPKLALNCVGGNSAT----NLLRTLVSKGVMVTYG  313 (405)
Q Consensus       271 -----------d---~--------~~i~~~t~g~g~Dvvld~~g~~~~~----~~~~~l~~~G~~v~~g  313 (405)
                                 +   +        .++.+.. +..+|.++-++|+..+.    ..++...+..+++-+-
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~a~Ei~~q~-~~~~d~vv~~~G~Gg~~~G~~~~~k~~~~~~~i~~Ve  198 (292)
T d2bhsa1         131 RGEGKLLDQFNNPDNPYAHYTTTGPEIWQQT-GGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQ  198 (292)
T ss_dssp             HTSSEECCTTTCTHHHHHHHHTHHHHHHHHT-TTCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEEE
T ss_pred             cccccccCCCchhcchhhHHHHHHHHhHHhc-CCCCCcccccCCCccchhhhhhhhhhccCcceEEEec
Confidence                       0   0        0111111 24589999988865443    2456677888877664

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=83.84  E-value=1.9  Score=32.59  Aligned_cols=70  Identities=17%  Similarity=0.144  Sum_probs=42.2

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCCchh
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGNS  295 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~~~  295 (405)
                      +|.|.|. |-+|.+.+.-++..|.++++..+++++.  ........+.  .-+..+.  +      ...|+||-|+..+.
T Consensus         2 kIgiIG~-G~mG~~ia~~l~~~g~~v~~~~~~~~~~--~~~~~~~~~~--~~~~~e~--~------~~~diIi~~v~~~~   68 (152)
T d1i36a2           2 RVGFIGF-GEVAQTLASRLRSRGVEVVTSLEGRSPS--TIERARTVGV--TETSEED--V------YSCPVVISAVTPGV   68 (152)
T ss_dssp             EEEEESC-SHHHHHHHHHHHHTTCEEEECCTTCCHH--HHHHHHHHTC--EECCHHH--H------HTSSEEEECSCGGG
T ss_pred             EEEEEcH-HHHHHHHHHHHHHCCCeEEEEcCchhHH--HHHhhhcccc--cccHHHH--H------hhcCeEEEEecCch
Confidence            5889998 9999999999888999887765444332  1223333333  2222221  1      13577777776654


Q ss_pred             HHH
Q psy2960         296 ATN  298 (405)
Q Consensus       296 ~~~  298 (405)
                      ...
T Consensus        69 ~~~   71 (152)
T d1i36a2          69 ALG   71 (152)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=83.61  E-value=0.98  Score=33.64  Aligned_cols=37  Identities=14%  Similarity=0.111  Sum_probs=32.6

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecC
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRN  247 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~  247 (405)
                      .++++++|+|.|+ |.+|+-++..++.+|.+|..+-+.
T Consensus        31 ~~~~~k~v~VIGg-G~iG~E~A~~l~~~g~~Vtvie~~   67 (133)
T d1q1ra2          31 QLIADNRLVVIGG-GYIGLEVAATAIKANMHVTLLDTA   67 (133)
T ss_dssp             TCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             hhccCCEEEEECC-chHHHHHHHHHHhhCcceeeeeec
Confidence            4667899999999 999999999999999998888654

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.60  E-value=0.39  Score=39.34  Aligned_cols=96  Identities=9%  Similarity=-0.021  Sum_probs=57.1

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHH----cCCcEE-eChhhHHHHhhhc-CCCC
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKS----LGADYV-FTEEELRNISRDA-SIPK  283 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~----lg~~~v-~~~~d~~~i~~~t-~g~g  283 (405)
                      ...++.+||=.|+  |.|..+..+++..+.+++++--+    +..++.+++    .+...+ +-..|+   .++. ....
T Consensus        57 ~~~~~~~vLDiGc--G~G~~~~~l~~~~~~~v~~vD~s----~~~l~~ak~~~~~~~~~~~~f~~~d~---~~~~~~~~~  127 (222)
T d2ex4a1          57 NKTGTSCALDCGA--GIGRITKRLLLPLFREVDMVDIT----EDFLVQAKTYLGEEGKRVRNYFCCGL---QDFTPEPDS  127 (222)
T ss_dssp             -CCCCSEEEEETC--TTTHHHHHTTTTTCSEEEEEESC----HHHHHHHHHHTGGGGGGEEEEEECCG---GGCCCCSSC
T ss_pred             CCCCCCEEEEecc--CCCHhhHHHHHhcCCEEEEeecC----HHHhhccccccccccccccccccccc---ccccccccc
Confidence            4567889999998  66888888877777777776433    333454443    232222 111122   2211 2456


Q ss_pred             CcEEEECC-----Cch----hHHHHHHhcccCCEEEEEec
Q psy2960         284 PKLALNCV-----GGN----SATNLLRTLVSKGVMVTYGG  314 (405)
Q Consensus       284 ~Dvvld~~-----g~~----~~~~~~~~l~~~G~~v~~g~  314 (405)
                      +|+|+..-     ..+    .+....+.|+|+|.++..-.
T Consensus       128 fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~  167 (222)
T d2ex4a1         128 YDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDN  167 (222)
T ss_dssp             EEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEc
Confidence            89988743     222    23345688999999988653

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.55  E-value=3.7  Score=30.90  Aligned_cols=37  Identities=19%  Similarity=0.311  Sum_probs=28.3

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCc
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRD  249 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~  249 (405)
                      ..+.+|.|.|+ |.||..++..+...|. .-++..+.++
T Consensus         4 ~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~   41 (148)
T d1ldna1           4 NGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANE   41 (148)
T ss_dssp             TTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeecc
Confidence            35678999998 9999999988888774 5566665433

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=83.52  E-value=2.7  Score=35.98  Aligned_cols=59  Identities=19%  Similarity=0.238  Sum_probs=46.4

Q ss_pred             hhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEe
Q psy2960         207 DYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVF  267 (405)
Q Consensus       207 ~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~  267 (405)
                      +.+.+.++++|+...+ |.-|+++...|+.+|.+.++++... ....+...++.+|++.+.
T Consensus        54 ~~g~~~~~~~vv~~Ss-GN~g~a~A~~a~~~G~~~~i~~p~~-~~~~k~~~~~~~GA~vv~  112 (310)
T d1y7la1          54 KDGTLTKGKEIVDATS-GNTGIALAYVAAARGYKITLTMPET-MSLERKRLLCGLGVNLVL  112 (310)
T ss_dssp             HTTSSCTTCEEEESCC-SHHHHHHHHHHHHHTCCEEEEEETT-SCHHHHHHHHHTTCEEEE
T ss_pred             HcCCCCCCceeeeecC-CCchHHHHHHHHHhhccccccchhh-hhhhhhhhHHHhCCceEe
Confidence            3356678877666555 9999999999999999988887553 346778888999998775

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=83.10  E-value=3  Score=32.27  Aligned_cols=98  Identities=14%  Similarity=0.119  Sum_probs=49.2

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC-cEEeChh--hHHHHhhhcCCCCCcE
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA-DYVFTEE--ELRNISRDASIPKPKL  286 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~-~~v~~~~--d~~~i~~~t~g~g~Dv  286 (405)
                      .+.+|.+||=.++  |.|..++. |...|++++.+-.+++..+...+.++.+|. +.+...+  .+.... ...+..+|+
T Consensus        38 ~~~~g~~vLDl~~--G~G~~~i~-a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~-~~~~~~fD~  113 (171)
T d1ws6a1          38 RYPRRGRFLDPFA--GSGAVGLE-AASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEA-KAQGERFTV  113 (171)
T ss_dssp             HCTTCCEEEEETC--SSCHHHHH-HHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHH-HHTTCCEEE
T ss_pred             cccCCCeEEEecc--ccchhhhh-hhhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccc-cccCCccce
Confidence            5678888886665  33444444 334699887642222222222334455565 3454332  222211 122457999


Q ss_pred             EEEC----CCc-hhHHHHH--HhcccCCEEEE
Q psy2960         287 ALNC----VGG-NSATNLL--RTLVSKGVMVT  311 (405)
Q Consensus       287 vld~----~g~-~~~~~~~--~~l~~~G~~v~  311 (405)
                      |+--    .+- +.....+  ..++++|.++.
T Consensus       114 If~DPPY~~~~~~~l~~l~~~~ll~~~g~ivi  145 (171)
T d1ws6a1         114 AFMAPPYAMDLAALFGELLASGLVEAGGLYVL  145 (171)
T ss_dssp             EEECCCTTSCTTHHHHHHHHHTCEEEEEEEEE
T ss_pred             eEEccccccCHHHHHHHHHHcCCcCCCeEEEE
Confidence            8742    121 2233333  35788887664

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=82.76  E-value=0.95  Score=33.37  Aligned_cols=35  Identities=9%  Similarity=0.004  Sum_probs=30.9

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      ..++++|.|+ |.+|+=++++.+.+|.+|..+.+++
T Consensus        25 ~p~~vvIiGg-G~IG~E~A~~~~~~G~~Vtive~~~   59 (125)
T d1ojta2          25 VPGKLLIIGG-GIIGLEMGTVYSTLGSRLDVVEMMD   59 (125)
T ss_dssp             CCSEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             cCCeEEEECC-CHHHHHHHHHhhcCCCEEEEEEeec
Confidence            4589999999 9999999999999999999886543

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=82.74  E-value=2.5  Score=31.99  Aligned_cols=46  Identities=9%  Similarity=0.023  Sum_probs=37.2

Q ss_pred             HHHHHHHhhcCCCCCCEEEEe--CCCcHHHHHHHHHHHHcCCcEEEEecCC
Q psy2960         200 TAYRMLKDYNSLSPGDVVIQN--GANSACGQNVIQIARHWGLKTINIVRNR  248 (405)
Q Consensus       200 ta~~al~~~~~~~~g~~VLI~--ga~G~vG~~aiqla~~~G~~v~~~~~~~  248 (405)
                      |....+.  .+..+++.|+|.  |+ |-+|+-+++.+..+|++|..+...+
T Consensus        27 t~~d~l~--~~~~~~~~vvi~d~gg-g~ig~e~A~~la~~G~~Vtlv~~~~   74 (156)
T d1djqa2          27 TPEQVMD--GKKKIGKRVVILNADT-YFMAPSLAEKLATAGHEVTIVSGVH   74 (156)
T ss_dssp             CHHHHHH--TCSCCCSEEEEEECCC-SSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CHHHHhc--CccccCCceEEEecCC-ChHHHHHHHHHHHcCCeEEEEecCC
Confidence            5555553  577889999987  66 8999999999999999998887543

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.70  E-value=1  Score=35.47  Aligned_cols=94  Identities=13%  Similarity=0.126  Sum_probs=53.9

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCC-cc-hHHHHHH-HHHc---CCcEEeChhhHHHHhhhcCCCCCcEEE
Q psy2960         216 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNR-DD-IDKLKSY-LKSL---GADYVFTEEELRNISRDASIPKPKLAL  288 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~-~~-~~~~~~~-~~~l---g~~~v~~~~d~~~i~~~t~g~g~Dvvl  288 (405)
                      +|.|.||+|-+|+-.++++... ..++..+.... +. ..++... .+.+   .........+..     .....+|++|
T Consensus         3 kVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~dvvf   77 (179)
T d2g17a1           3 NTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVR-----DFSADVDVVF   77 (179)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGG-----GTCTTCCEEE
T ss_pred             EEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhh-----hhhcccceee
Confidence            6899999999999999999887 66665544221 11 0111111 1111   111111111111     0134689999


Q ss_pred             ECCCchhHHHHH-HhcccCCEEEEEec
Q psy2960         289 NCVGGNSATNLL-RTLVSKGVMVTYGG  314 (405)
Q Consensus       289 d~~g~~~~~~~~-~~l~~~G~~v~~g~  314 (405)
                      -|++........ ..+..+-+++..+.
T Consensus        78 ~alp~~~s~~~~~~~~~~~~~vIDlSa  104 (179)
T d2g17a1          78 LATAHEVSHDLAPQFLQAGCVVFDLSG  104 (179)
T ss_dssp             ECSCHHHHHHHHHHHHHTTCEEEECSS
T ss_pred             ccccchhHHHHhhhhhhcCceeecccc
Confidence            999988776654 45566667777664

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=82.44  E-value=6.4  Score=30.22  Aligned_cols=94  Identities=16%  Similarity=0.161  Sum_probs=56.9

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCC-------cE-------EeCh--------hhH
Q psy2960         216 VVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGA-------DY-------VFTE--------EEL  272 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~-------~~-------v~~~--------~d~  272 (405)
                      +|.|.|- |-+|.++..++... ..+++++-... ..+ .+..+.+...       +.       +++.        ++.
T Consensus         3 kigINGF-GRIGR~v~R~~~~~~~i~ivaINd~~-~~~-~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~p   79 (166)
T d1gado1           3 KVGINGF-GRIGRIVFRAAQKRSDIEIVAINDLL-DAD-YMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDP   79 (166)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTCSSEEEEEEECSS-CHH-HHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             EEEEECC-cHHHHHHHHHHhhCCCeEEEEEeCCC-CHH-HHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCCh
Confidence            5889998 99999999988776 45667666543 323 3334433321       11       1111        122


Q ss_pred             HH--HhhhcCCCCCcEEEECCCchhHH-HHHHhcccCCEEEEEeccC
Q psy2960         273 RN--ISRDASIPKPKLALNCVGGNSAT-NLLRTLVSKGVMVTYGGMS  316 (405)
Q Consensus       273 ~~--i~~~t~g~g~Dvvld~~g~~~~~-~~~~~l~~~G~~v~~g~~~  316 (405)
                      .+  ..+    .++|+||||+|.-... .+...+..+-+-|.+..+.
T Consensus        80 ~~i~W~~----~gvDiViEcTG~f~t~~~~~~hl~~gakkViiSaP~  122 (166)
T d1gado1          80 ANLKWDE----VGVDVVAEATGLFLTDETARKHITAGAKKVVMTGPS  122 (166)
T ss_dssp             GGGCHHH----HTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC
T ss_pred             HHCCccc----cCCCEEEEccccccCHHHHHHHhcCCCceEEeeccc
Confidence            22  222    3799999999975554 4556777777667676543

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=82.17  E-value=1.7  Score=35.82  Aligned_cols=35  Identities=17%  Similarity=0.239  Sum_probs=29.8

Q ss_pred             CCCCEEEEeCCCcHHHHHHHHHH-HHcCCcEEEEecC
Q psy2960         212 SPGDVVIQNGANSACGQNVIQIA-RHWGLKTINIVRN  247 (405)
Q Consensus       212 ~~g~~VLI~ga~G~vG~~aiqla-~~~G~~v~~~~~~  247 (405)
                      -.|.+|+|.|. |.||..+++.+ +..|++++++..+
T Consensus        29 l~g~~vaIqG~-GnVG~~~a~~L~~e~Ga~vv~vsd~   64 (234)
T d1b26a1          29 PKKATVAVQGF-GNVGQFAALLISQELGSKVVAVSDS   64 (234)
T ss_dssp             TTTCEEEEECC-SHHHHHHHHHHHHHHCCEEEEEEET
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHhcCCceEEeecC
Confidence            36899999998 99999999877 5789999988743

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=82.15  E-value=3.3  Score=35.06  Aligned_cols=102  Identities=14%  Similarity=0.157  Sum_probs=59.6

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEEe-ChhhHHHHhhhcCCCCCcE
Q psy2960         209 NSLSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVF-TEEELRNISRDASIPKPKL  286 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~-~~~d~~~i~~~t~g~g~Dv  286 (405)
                      ...++|++||=..| ++ |-=+.++|..+ +.++++.-.+..+.....+.++.+|...+. ...+.. .........||.
T Consensus        98 L~~~~g~~vLD~CA-aP-GgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~-~~~~~~~~~fd~  174 (284)
T d1sqga2          98 LAPQNGEHILDLCA-AP-GGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRY-PSQWCGEQQFDR  174 (284)
T ss_dssp             HCCCTTCEEEEESC-TT-CHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTC-THHHHTTCCEEE
T ss_pred             cCccccceeEeccC-cc-ccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccc-cchhcccccccE
Confidence            46789999987655 33 33344555544 345666665555666667778889986443 222211 112222456887


Q ss_pred             EE-E--CCCchh--------------------------HHHHHHhcccCCEEEEEe
Q psy2960         287 AL-N--CVGGNS--------------------------ATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       287 vl-d--~~g~~~--------------------------~~~~~~~l~~~G~~v~~g  313 (405)
                      || |  |+|...                          +..+++++++||++|..-
T Consensus       175 IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsT  230 (284)
T d1sqga2         175 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYAT  230 (284)
T ss_dssp             EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEee
Confidence            76 4  666331                          234566788888887654

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=82.03  E-value=0.75  Score=37.62  Aligned_cols=97  Identities=6%  Similarity=-0.022  Sum_probs=55.7

Q ss_pred             HhhcCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEE-eChhhHHHHhhhcCCCCC
Q psy2960         206 KDYNSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYV-FTEEELRNISRDASIPKP  284 (405)
Q Consensus       206 ~~~~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v-~~~~d~~~i~~~t~g~g~  284 (405)
                      .......++++||=.|+  |.|..+..+++ .|.+|+++-    ..+..++.+++...+.+ +...++..   ......+
T Consensus        13 ~~~~~~~~~~~VLDiGc--G~G~~~~~l~~-~g~~v~giD----~s~~~i~~a~~~~~~~~~~~~~~~~~---~~~~~~f   82 (225)
T d2p7ia1          13 RAFTPFFRPGNLLELGS--FKGDFTSRLQE-HFNDITCVE----ASEEAISHAQGRLKDGITYIHSRFED---AQLPRRY   82 (225)
T ss_dssp             HHHGGGCCSSCEEEESC--TTSHHHHHHTT-TCSCEEEEE----SCHHHHHHHHHHSCSCEEEEESCGGG---CCCSSCE
T ss_pred             HHhhhhCCCCcEEEEeC--CCcHHHHHHHH-cCCeEEEEe----CcHHHhhhhhcccccccccccccccc---ccccccc
Confidence            33344456778999998  45777777664 588888774    33445666665433222 11122222   1123568


Q ss_pred             cEEEECCCch-------hHHHHH-HhcccCCEEEEE
Q psy2960         285 KLALNCVGGN-------SATNLL-RTLVSKGVMVTY  312 (405)
Q Consensus       285 Dvvld~~g~~-------~~~~~~-~~l~~~G~~v~~  312 (405)
                      |+|+-.---+       .+.... ++|+|+|.++..
T Consensus        83 D~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~  118 (225)
T d2p7ia1          83 DNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLV  118 (225)
T ss_dssp             EEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             ccccccceeEecCCHHHHHHHHHHHhcCCCceEEEE
Confidence            9998533211       122344 578999998875

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.90  E-value=0.92  Score=38.99  Aligned_cols=93  Identities=8%  Similarity=0.020  Sum_probs=54.4

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHcCC----------cEEeChhhHHH-HhhhcCC
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIVRNRDDIDKLKSYLKSLGA----------DYVFTEEELRN-ISRDASI  281 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~----------~~v~~~~d~~~-i~~~t~g  281 (405)
                      .-++|||.|+  |-|..+-.++++.+.+.+.++.-   .+.-.+.+++.-.          -.++ ..|..+ +++.  .
T Consensus        89 ~pk~VLiiGg--G~G~~~r~~l~~~~~~~i~~VEI---Dp~Vi~~a~~~~~~~~~~~~d~rv~v~-~~Da~~~l~~~--~  160 (295)
T d1inla_          89 NPKKVLIIGG--GDGGTLREVLKHDSVEKAILCEV---DGLVIEAARKYLKQTSCGFDDPRAEIV-IANGAEYVRKF--K  160 (295)
T ss_dssp             SCCEEEEEEC--TTCHHHHHHTTSTTCSEEEEEES---CHHHHHHHHHHCHHHHGGGGCTTEEEE-ESCHHHHGGGC--S
T ss_pred             CCceEEEecC--CchHHHHHHHhcCCCceEEEecC---CHHHHHHHHHHHHhhcccccCCCcEEE-hhhHHHHHhcC--C
Confidence            3479999998  33566778888887777777733   3344555544211          1222 123333 4432  4


Q ss_pred             CCCcEEE-ECCC-----------chhHHHHHHhcccCCEEEEEe
Q psy2960         282 PKPKLAL-NCVG-----------GNSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       282 ~g~Dvvl-d~~g-----------~~~~~~~~~~l~~~G~~v~~g  313 (405)
                      ..+|+|| |+..           .+....+.++|+++|.++.-.
T Consensus       161 ~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~  204 (295)
T d1inla_         161 NEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  204 (295)
T ss_dssp             SCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence            5799977 3321           123345678999999998754

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=81.82  E-value=6.3  Score=29.48  Aligned_cols=72  Identities=14%  Similarity=0.094  Sum_probs=39.5

Q ss_pred             EEEEeCCCcHHHHHHHHHH-HHcC-CcEEEEecCCcchHHHHHHHHHcCC---cEEeC-hhhHHHHhhhcCCCCCcEEEE
Q psy2960         216 VVIQNGANSACGQNVIQIA-RHWG-LKTINIVRNRDDIDKLKSYLKSLGA---DYVFT-EEELRNISRDASIPKPKLALN  289 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla-~~~G-~~v~~~~~~~~~~~~~~~~~~~lg~---~~v~~-~~d~~~i~~~t~g~g~Dvvld  289 (405)
                      +|.|.|++|.||..++..+ ...+ +.-+...+.++..+.....+.....   ...+. ..+.+.+      .+.|+|+-
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~------~~aDvvvi   75 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPAL------EGADVVLI   75 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHH------TTCSEEEE
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCcccc------CCCCEEEE
Confidence            6899998899998877654 3444 4667777654432211112222221   11221 2222222      35799999


Q ss_pred             CCCc
Q psy2960         290 CVGG  293 (405)
Q Consensus       290 ~~g~  293 (405)
                      +.|.
T Consensus        76 taG~   79 (145)
T d2cmda1          76 SAGV   79 (145)
T ss_dssp             CCSC
T ss_pred             CCCc
Confidence            9884

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=81.42  E-value=1.1  Score=32.23  Aligned_cols=33  Identities=12%  Similarity=0.097  Sum_probs=29.1

Q ss_pred             CCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecC
Q psy2960         214 GDVVIQNGANSACGQNVIQIARHWGLKTINIVRN  247 (405)
Q Consensus       214 g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~  247 (405)
                      .++++|.|| |.+|.-+++.++.+|++|..+-+.
T Consensus        21 p~~vvIiGg-G~~G~E~A~~l~~~g~~Vtlve~~   53 (115)
T d1lvla2          21 PQHLVVVGG-GYIGLELGIAYRKLGAQVSVVEAR   53 (115)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCeEEEECC-CHHHHHHHHHHhhcccceEEEeee
Confidence            389999999 999999999999999998877544

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.38  E-value=1.2  Score=35.51  Aligned_cols=34  Identities=21%  Similarity=0.266  Sum_probs=29.9

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCCcEEEEecCCc
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGLKTINIVRNRD  249 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~~~~~  249 (405)
                      ++|.|.|+ |-+|...++++...|++|+....+.+
T Consensus         5 kkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           5 KHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             EEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChH
Confidence            58999999 99999999999999999998865544

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=81.30  E-value=0.67  Score=36.24  Aligned_cols=29  Identities=17%  Similarity=0.172  Sum_probs=26.3

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCCcEEEEe
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGLKTINIV  245 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~~v~~~~  245 (405)
                      -|+|.|| |+.|+.|+..|...|+++..+-
T Consensus         3 DViIIGg-GpaGl~AAi~aar~G~~v~iie   31 (184)
T d1fl2a1           3 DVLIVGS-GPAGAAAAIYSARKGIRTGLMG   31 (184)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTCCEEEEC
T ss_pred             cEEEECc-CHHHHHHHHHHHHcCCeEEEEE
Confidence            3899999 9999999999999999988874

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=80.97  E-value=2.4  Score=33.63  Aligned_cols=103  Identities=16%  Similarity=0.113  Sum_probs=54.2

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEEe---ChhhHHHHhhhcCCCCC
Q psy2960         209 NSLSPGDVVIQNGANSACGQNVIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVF---TEEELRNISRDASIPKP  284 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~---~~~d~~~i~~~t~g~g~  284 (405)
                      ..+++|+.+ |-.+.| .|-.+-.+++.. +++++++-.+.+..+...+.++.++....+   +..++..+....+-..+
T Consensus        19 l~~~~~~~~-lD~t~G-~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~v   96 (192)
T d1m6ya2          19 LKPEDEKII-LDCTVG-EGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKV   96 (192)
T ss_dssp             HCCCTTCEE-EETTCT-TSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCE
T ss_pred             hCCCCCCEE-EEecCC-CcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCc
Confidence            467888865 555534 454455566554 678887754443333223333344533222   22344443233334678


Q ss_pred             cEEEECCCc----------------hhHHHHHHhcccCCEEEEEe
Q psy2960         285 KLALNCVGG----------------NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       285 Dvvld~~g~----------------~~~~~~~~~l~~~G~~v~~g  313 (405)
                      |.|+--+|-                ..+..+.+.|+++|+++.+.
T Consensus        97 dgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~  141 (192)
T d1m6ya2          97 DGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVIS  141 (192)
T ss_dssp             EEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEE
T ss_pred             ceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeec
Confidence            887644442                12233456778888877664

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=80.92  E-value=5.5  Score=34.21  Aligned_cols=102  Identities=9%  Similarity=0.002  Sum_probs=52.1

Q ss_pred             cCCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEe-cCCcchHHHHHHHHHcCC--c-E-EeChhhHHHHhhh-cCCC
Q psy2960         209 NSLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIV-RNRDDIDKLKSYLKSLGA--D-Y-VFTEEELRNISRD-ASIP  282 (405)
Q Consensus       209 ~~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~-~~~~~~~~~~~~~~~lg~--~-~-v~~~~d~~~i~~~-t~g~  282 (405)
                      ..+.+|++||=..+  +.|-.++..| ..|++.++.+ .+....+...+.+...|.  + + ++..+-+..+... ..+.
T Consensus       140 ~~~~~g~~VLdlf~--~~G~~sl~aa-~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~  216 (317)
T d2b78a2         140 NGSAAGKTVLNLFS--YTAAFSVAAA-MGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHL  216 (317)
T ss_dssp             HTTTBTCEEEEETC--TTTHHHHHHH-HTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTC
T ss_pred             HHhhCCCceeecCC--CCcHHHHHHH-hCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcC
Confidence            46778999986655  2333334333 4688654444 333332323333333343  2 2 2222222222221 2356


Q ss_pred             CCcEEEEC---CCc-------------hhHHHHHHhcccCCEEEEEe
Q psy2960         283 KPKLALNC---VGG-------------NSATNLLRTLVSKGVMVTYG  313 (405)
Q Consensus       283 g~Dvvld~---~g~-------------~~~~~~~~~l~~~G~~v~~g  313 (405)
                      .+|+||--   .+.             +....++++|+|||.++...
T Consensus       217 ~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~s  263 (317)
T d2b78a2         217 TYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST  263 (317)
T ss_dssp             CEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             CCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            79998742   110             12345678999999998865

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=80.88  E-value=8.9  Score=28.48  Aligned_cols=31  Identities=16%  Similarity=0.072  Sum_probs=25.6

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHcCC-cEEEEec
Q psy2960         216 VVIQNGANSACGQNVIQIARHWGL-KTINIVR  246 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~  246 (405)
                      +|.|.|++|.+|..++..+...+. ..++..+
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~D   33 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVD   33 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEe
Confidence            689999889999999988888875 5666664

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=80.74  E-value=0.87  Score=38.94  Aligned_cols=35  Identities=17%  Similarity=0.133  Sum_probs=29.5

Q ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEe
Q psy2960         210 SLSPGDVVIQNGANSACGQNVIQIARHWGLKTINIV  245 (405)
Q Consensus       210 ~~~~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~  245 (405)
                      .....++|+|+|| |..|+.|+..+...|.+|.+.-
T Consensus        26 ~~~~pkkV~IIGa-G~aGLsaA~~L~~~G~~V~vlE   60 (370)
T d2iida1          26 ATSNPKHVVIVGA-GMAGLSAAYVLAGAGHQVTVLE   60 (370)
T ss_dssp             CCSSCCEEEEECC-BHHHHHHHHHHHHHTCEEEEEC
T ss_pred             CCCCCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEe
Confidence            3445679999999 9999999999998999887773

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=80.54  E-value=0.38  Score=38.24  Aligned_cols=32  Identities=16%  Similarity=0.177  Sum_probs=28.5

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEe
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIV  245 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~  245 (405)
                      ++..|+|.|+ |+.|+.|+..|..+|++++.+-
T Consensus         4 k~~dVvIIGG-GpaGl~AA~~~ar~g~~v~iie   35 (190)
T d1trba1           4 KHSKLLILGS-GPAGYTAAVYAARANLQPVLIT   35 (190)
T ss_dssp             EEEEEEEECC-SHHHHHHHHHHHTTTCCCEEEC
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCCceEEEE
Confidence            4567999999 9999999999999999998874

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=80.48  E-value=3.8  Score=27.92  Aligned_cols=67  Identities=15%  Similarity=0.133  Sum_probs=44.6

Q ss_pred             EEEEeCCCcHHHHHH-HHHHHHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCCc
Q psy2960         216 VVIQNGANSACGQNV-IQIARHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGG  293 (405)
Q Consensus       216 ~VLI~ga~G~vG~~a-iqla~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~  293 (405)
                      +|-+.|- ||+|+.+ +++++..|+.|.+.-...   ....+.++++|...... .+.+.+      .+.|+|+=+.+-
T Consensus         3 ~ihfiGI-gG~GMs~LA~~L~~~G~~VsGSD~~~---~~~t~~L~~~Gi~i~~g-h~~~~i------~~~d~vV~SsAI   70 (89)
T d1j6ua1           3 KIHFVGI-GGIGMSAVALHEFSNGNDVYGSNIEE---TERTAYLRKLGIPIFVP-HSADNW------YDPDLVIKTPAV   70 (89)
T ss_dssp             EEEEETT-TSHHHHHHHHHHHHTTCEEEEECSSC---CHHHHHHHHTTCCEESS-CCTTSC------CCCSEEEECTTC
T ss_pred             EEEEEeE-CHHHHHHHHHHHHhCCCeEEEEeCCC---ChhHHHHHHCCCeEEee-eccccc------CCCCEEEEecCc
Confidence            5777888 8899866 588899999888875443   23456688999874432 221112      357888876653

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=80.33  E-value=7.9  Score=29.78  Aligned_cols=94  Identities=14%  Similarity=0.068  Sum_probs=55.6

Q ss_pred             EEEEeCCCcHHHHHHHHHHHHc---CCcEEEEecCCcchHHHHHHHHHcCC-------cEE-------eC--------hh
Q psy2960         216 VVIQNGANSACGQNVIQIARHW---GLKTINIVRNRDDIDKLKSYLKSLGA-------DYV-------FT--------EE  270 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla~~~---G~~v~~~~~~~~~~~~~~~~~~~lg~-------~~v-------~~--------~~  270 (405)
                      +|.|.|- |-+|.++.+.+...   ..+++++-+.. ..+ .+..+.+...       +.-       ++        .+
T Consensus         2 kIgINGf-GRIGR~v~R~~~~~~~~~i~vvaINd~~-~~e-~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~   78 (169)
T d1hdgo1           2 RVAINGF-GRIGRLVYRIIYERKNPDIEVVAINDLT-DTK-TLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEP   78 (169)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCTTCEEEEEECSS-CHH-HHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCS
T ss_pred             EEEEECC-ChHHHHHHHHHHhccCCCEEEEEeccCc-cHH-HHHHHHhccccccccCceEEEECCEEEECCEEEEEEeCC
Confidence            6899998 99999999987653   46777775543 323 3344433311       111       11        11


Q ss_pred             hHHH--HhhhcCCCCCcEEEECCCchhH-HHHHHhcccCCEEEEEeccC
Q psy2960         271 ELRN--ISRDASIPKPKLALNCVGGNSA-TNLLRTLVSKGVMVTYGGMS  316 (405)
Q Consensus       271 d~~~--i~~~t~g~g~Dvvld~~g~~~~-~~~~~~l~~~G~~v~~g~~~  316 (405)
                      +..+  ..+    .++|+||||+|.-.. ..+...+..|-+-|.+..+.
T Consensus        79 ~p~~i~W~~----~gvD~ViEcTG~f~t~~~~~~hl~~GakkViiSAP~  123 (169)
T d1hdgo1          79 DPSKLPWKD----LGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPA  123 (169)
T ss_dssp             SGGGSCHHH----HTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC
T ss_pred             ChhhCCccc----cCCCEEEEecceeccccchhhhccCCCceEEEeccc
Confidence            2222  222    279999999997444 44556777766556665443

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=80.32  E-value=0.47  Score=35.22  Aligned_cols=82  Identities=12%  Similarity=0.051  Sum_probs=52.7

Q ss_pred             EEEEeCCCcHHHHHHHHHH-HHcCCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCCch
Q psy2960         216 VVIQNGANSACGQNVIQIA-RHWGLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGGN  294 (405)
Q Consensus       216 ~VLI~ga~G~vG~~aiqla-~~~G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~~  294 (405)
                      +|+|.|| |..|.+.+... +..|.++++.++.+..     ..=+.+..-.|++.++...+.    ...+++++-++...
T Consensus         5 ~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~-----k~G~~I~Gi~V~~~~~l~~~~----~~~i~iai~~i~~~   74 (126)
T d2dt5a2           5 GLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPE-----KVGRPVRGGVIEHVDLLPQRV----PGRIEIALLTVPRE   74 (126)
T ss_dssp             EEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTT-----TTTCEETTEEEEEGGGHHHHS----TTTCCEEEECSCHH
T ss_pred             eEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchH-----hcCCEECCEEEecHHHHHHHH----hhcccEEEEeCCHH
Confidence            7999999 89998766532 2347789999865432     111233344566666655522    23578999999888


Q ss_pred             hHHHHHHhcccCC
Q psy2960         295 SATNLLRTLVSKG  307 (405)
Q Consensus       295 ~~~~~~~~l~~~G  307 (405)
                      ..+...+.|-..|
T Consensus        75 ~~~~I~d~l~~~g   87 (126)
T d2dt5a2          75 AAQKAADLLVAAG   87 (126)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcC
Confidence            7777765555444

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.23  E-value=1.5  Score=33.52  Aligned_cols=32  Identities=22%  Similarity=0.205  Sum_probs=27.6

Q ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCcEEEEe
Q psy2960         213 PGDVVIQNGANSACGQNVIQIARHWGLKTINIV  245 (405)
Q Consensus       213 ~g~~VLI~ga~G~vG~~aiqla~~~G~~v~~~~  245 (405)
                      .+++|+|.|| |-+|.=++..|..+||+.+.++
T Consensus        44 ~~~kVvVIGG-GdtA~D~A~~a~r~GA~~V~vi   75 (153)
T d1gtea3          44 IRGAVIVLGA-GDTAFDCATSALRCGARRVFLV   75 (153)
T ss_dssp             CCSEEEEECS-SHHHHHHHHHHHHTTCSEEEEE
T ss_pred             CCCEEEEECC-ChhHHHHHHHHHHcCCcceeEE
Confidence            4678999999 9999999999999999866555

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=80.08  E-value=4.8  Score=30.67  Aligned_cols=89  Identities=9%  Similarity=0.107  Sum_probs=52.5

Q ss_pred             EEEEeCCCcHHHHH-HHHHHHHc-CCcEEEEecCCcchHHHHHHHHHcCCcEEeChhhHHHHhhhcCCCCCcEEEECCCc
Q psy2960         216 VVIQNGANSACGQN-VIQIARHW-GLKTINIVRNRDDIDKLKSYLKSLGADYVFTEEELRNISRDASIPKPKLALNCVGG  293 (405)
Q Consensus       216 ~VLI~ga~G~vG~~-aiqla~~~-G~~v~~~~~~~~~~~~~~~~~~~lg~~~v~~~~d~~~i~~~t~g~g~Dvvld~~g~  293 (405)
                      +|.|.|+ |.+|.. .+...+.. +.+++ +++...  +........++...+++  +++++.+    ..+|+|+-|+..
T Consensus         3 rvgiiG~-G~~~~~~~~~~l~~~~~~~~~-~~d~~~--~~~~~~~~~~~~~~~~~--~~~~ll~----~~iD~V~I~tp~   72 (167)
T d1xeaa1           3 KIAMIGL-GDIAQKAYLPVLAQWPDIELV-LCTRNP--KVLGTLATRYRVSATCT--DYRDVLQ----YGVDAVMIHAAT   72 (167)
T ss_dssp             EEEEECC-CHHHHHTHHHHHTTSTTEEEE-EECSCH--HHHHHHHHHTTCCCCCS--STTGGGG----GCCSEEEECSCG
T ss_pred             EEEEEcC-CHHHHHHHHHHHHhCCCcEEE-EEECCH--HHHHHHHHhcccccccc--cHHHhcc----cccceecccccc
Confidence            6899998 888864 55555555 44554 554332  23345556677655443  3333222    258999999887


Q ss_pred             hhHH-HHHHhcccCCEEEEEecc
Q psy2960         294 NSAT-NLLRTLVSKGVMVTYGGM  315 (405)
Q Consensus       294 ~~~~-~~~~~l~~~G~~v~~g~~  315 (405)
                      ..-. .+..++.. |.-+.+..+
T Consensus        73 ~~H~~~~~~al~~-gk~V~~EKP   94 (167)
T d1xeaa1          73 DVHSTLAAFFLHL-GIPTFVDKP   94 (167)
T ss_dssp             GGHHHHHHHHHHT-TCCEEEESC
T ss_pred             ccccccccccccc-ccccccCCC
Confidence            5444 45566665 455666644

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=80.03  E-value=6.8  Score=29.18  Aligned_cols=72  Identities=11%  Similarity=0.085  Sum_probs=42.0

Q ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCC-cEEEEecCCcchHH--HHHHHH---HcCCcEEeChhhHHHHhhhcCCCCCcEEE
Q psy2960         215 DVVIQNGANSACGQNVIQIARHWGL-KTINIVRNRDDIDK--LKSYLK---SLGADYVFTEEELRNISRDASIPKPKLAL  288 (405)
Q Consensus       215 ~~VLI~ga~G~vG~~aiqla~~~G~-~v~~~~~~~~~~~~--~~~~~~---~lg~~~v~~~~d~~~i~~~t~g~g~Dvvl  288 (405)
                      .+|.|.|+ |.||..++..+...|. .-++..+.++...+  .+++..   -.+...+....+.+.      -.+.|+|+
T Consensus         2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~------~~daDvVV   74 (143)
T d1llda1           2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEI------CRDADMVV   74 (143)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGG------GTTCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHH------hhCCcEEE
Confidence            46899998 9999999988888776 56667754432211  111111   112233322222222      23579999


Q ss_pred             ECCCc
Q psy2960         289 NCVGG  293 (405)
Q Consensus       289 d~~g~  293 (405)
                      -+.|.
T Consensus        75 itaG~   79 (143)
T d1llda1          75 ITAGP   79 (143)
T ss_dssp             ECCCC
T ss_pred             Eeccc
Confidence            99984