Psyllid ID: psy2962
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 690 | 2.2.26 [Sep-21-2011] | |||||||
| Q9VCA2 | 548 | Organic cation transporte | yes | N/A | 0.707 | 0.890 | 0.433 | 1e-126 | |
| Q95R48 | 567 | Organic cation transporte | no | N/A | 0.718 | 0.874 | 0.421 | 1e-124 | |
| Q9Y226 | 551 | Solute carrier family 22 | yes | N/A | 0.586 | 0.735 | 0.348 | 2e-71 | |
| Q9WTN6 | 564 | Solute carrier family 22 | yes | N/A | 0.513 | 0.627 | 0.397 | 2e-70 | |
| O76082 | 557 | Solute carrier family 22 | no | N/A | 0.552 | 0.684 | 0.369 | 5e-69 | |
| Q63089 | 556 | Solute carrier family 22 | no | N/A | 0.568 | 0.705 | 0.326 | 3e-67 | |
| Q9H015 | 551 | Solute carrier family 22 | no | N/A | 0.607 | 0.760 | 0.338 | 3e-67 | |
| A9CB25 | 551 | Solute carrier family 22 | N/A | N/A | 0.607 | 0.760 | 0.338 | 1e-66 | |
| Q66KG0 | 566 | Solute carrier family 22 | N/A | N/A | 0.630 | 0.768 | 0.285 | 3e-66 | |
| Q6A4L0 | 551 | Solute carrier family 22 | no | N/A | 0.582 | 0.729 | 0.338 | 7e-66 |
| >sp|Q9VCA2|ORCT_DROME Organic cation transporter protein OS=Drosophila melanogaster GN=Orct PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 451 bits (1161), Expect = e-126, Method: Compositional matrix adjust.
Identities = 257/593 (43%), Positives = 351/593 (59%), Gaps = 105/593 (17%)
Query: 62 RCALPNEQDIAYFTPLSPNASSLSYPWDSVQKSYSSCVRYDANFTPEYYAGG--QSANNT 119
RCALP E Y LSP+ +LSYP + C YD ++T EY G +S+N T
Sbjct: 48 RCALPYENGSIY--ELSPHLWNLSYPENE------RCSYYDVDYTEEYLNGSIPRSSNET 99
Query: 120 VPCDRWLFDPE--WNTTVSEVLMVFHRRLGDKVPSLYIDLNQTIQYSRSTQEPVLTNFVM 177
C +++D N+ V+E
Sbjct: 100 KTCSSYVYDRSKYLNSAVTE---------------------------------------- 119
Query: 178 WSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAP 237
W+LVC ++ TSD+ M+GVLLGSLIFG +SD+ GRKPTF S+++ +FG LAA AP
Sbjct: 120 WNLVCSRSLLSATSDSLFMLGVLLGSLIFGQMSDKLGRKPTFFASLVLQLIFGVLAAVAP 179
Query: 238 DFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYF 297
+++++T R+IVGA+TSGVFLVAYV+ALEMVG S R+ AG + MFFS+GF+L AG AYF
Sbjct: 180 EYFSYTISRMIVGATTSGVFLVAYVIALEMVGSSYRLFAGVAMQMFFSVGFMLTAGFAYF 239
Query: 298 VHDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFV 357
+HDWR L I +TLPGL++L Y+W IPESARWL+ KGR +EA +II+ A+ENKV + +
Sbjct: 240 IHDWRWLQIAITLPGLLFLCYYWIIPESARWLLMKGRKDEAFVIIEKAAKENKVEVPNEI 299
Query: 358 LDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNT 417
+ L+ E++++ + P ++F+L R+PNL +K+++IFF WFV S YYGLSWNT
Sbjct: 300 YEQLVDEVAEKKKQDEMAASQPAATVFDLLRYPNLRRKTLLIFFDWFVNSGVYYGLSWNT 359
Query: 418 ANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLN 477
NLGGN +NF+ISG VEIP Y + TL+R+GR++ LC ++++G+ L+ + +P D+N
Sbjct: 360 NNLGGNQLVNFMISGAVEIPGYTLLLFTLNRWGRRSILCGTMMVAGISLLATIFVPSDMN 419
Query: 478 TVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEA 537
+ + AM+GK IT +YG +YIFSAEQFPTV+RN+G+GA S ARVGGI A Y
Sbjct: 420 WLIVACAMIGKLAITSSYGTIYIFSAEQFPTVVRNVGLGASSMVARVGGILAPY------ 473
Query: 538 FPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVILIDQVFLLQVEIWLPLPF 597
L LG EIW PLP
Sbjct: 474 --LKLLG---------------------------------------------EIWRPLPL 486
Query: 598 LMFGVLSLTAGILSLILPETHHKKLPESIADGENFGKVLGPIQGVPRTTVQRL 650
++ G LSLTAG+LSL+LPET +K +PE+I DGENFGK P + Q L
Sbjct: 487 IICGALSLTAGLLSLLLPETLNKPMPETIEDGENFGKKPAPQETAEEGGTQEL 539
|
Probably transports organic cations. Drosophila melanogaster (taxid: 7227) |
| >sp|Q95R48|OCTL_DROME Organic cation transporter-like protein OS=Drosophila melanogaster GN=Orct2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 445 bits (1144), Expect = e-124, Method: Compositional matrix adjust.
Identities = 258/612 (42%), Positives = 353/612 (57%), Gaps = 116/612 (18%)
Query: 62 RCALPNEQDIAYFTPLSPNASSLSYPWDSVQKSYSSCVRYDANFTPEYYAGG--QSANNT 119
RCALP E +Y P + +LSYP + C YD ++T EY G +S+N T
Sbjct: 48 RCALPFENGSSYDLP--THLWNLSYPENE------RCSYYDVDYTEEYLNGSIPRSSNET 99
Query: 120 VPCDRWLFDPE--WNTTVSEVLMVFHRRLGDKVPSLYIDLNQTIQYSRSTQEPVLTNFVM 177
C +++D N+ V+E
Sbjct: 100 KTCSSYVYDRSKYLNSAVTE---------------------------------------- 119
Query: 178 WSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAP 237
W+LVC + + TSD+ M+GVLLGS++FG +SD++GRKP S++I +FG LA AP
Sbjct: 120 WNLVCGRDFMAATSDSLFMLGVLLGSIVFGQLSDKYGRKPILFASLVIQVLFGVLAGVAP 179
Query: 238 DFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYF 297
+++T+T RL+VGA+TSGVFLVAYV+A+EMVGP KR+ AG + MFFS+GF+L A AYF
Sbjct: 180 EYFTYTFARLMVGATTSGVFLVAYVVAMEMVGPDKRLYAGIFVMMFFSVGFMLTAVFAYF 239
Query: 298 VHDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFV 357
VHDWR L I +TLPGLI++ Y+W IPESARWL+ KGR + A +Q A NKV +
Sbjct: 240 VHDWRWLQIALTLPGLIFMFYYWIIPESARWLLLKGRKDCAIANMQKAARFNKVEISDEA 299
Query: 358 LDGLLAPSPEEEEKLKAQ------NDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYY 411
L LL EEK K + ++GP PS+++LF +PNL +K+++IF W V S YY
Sbjct: 300 LSELLDEGENSEEKAKQKLEDQELDEGPPPSVWDLFCYPNLRRKTLLIFLDWLVTSGVYY 359
Query: 412 GLSWNTANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSAL 471
GLSWNT+NLGGN+ LNF+ISG VEIPAY+ +LTL+R+GR++ LC CL+++GL L+ + +
Sbjct: 360 GLSWNTSNLGGNVLLNFVISGAVEIPAYIFLLLTLNRWGRRSILCGCLVMAGLSLLATVI 419
Query: 472 LPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASY 531
+P ++T+ + AM+GK IT +YG VYIFSAEQFPTV+RN+ +GA S AR+ G+ A +
Sbjct: 420 IPQRMHTLIVACAMLGKLAITASYGTVYIFSAEQFPTVVRNVALGAASMVARISGMMAPF 479
Query: 532 TSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVILIDQVFLLQVEI 591
L++L T I
Sbjct: 480 --------LNFLAT---------------------------------------------I 486
Query: 592 WLPLPFLMFGVLSLTAGILSLILPETHHKKLPESIADGENFGKVLGPIQGVPRTTVQRLR 651
W PLP L+ G L+L AG+LSL+LPETH+K + E+IADGE FGK V T Q LR
Sbjct: 487 WKPLPLLICGSLTLVAGLLSLLLPETHNKPMLETIADGERFGKKTK--ADVYLETGQELR 544
Query: 652 VDVGPKGLPEKA 663
P+ P K
Sbjct: 545 ---APEAQPLKG 553
|
Probably transports organic cations. Drosophila melanogaster (taxid: 7227) |
| >sp|Q9Y226|S22AD_HUMAN Solute carrier family 22 member 13 OS=Homo sapiens GN=SLC22A13 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 270 bits (691), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 166/476 (34%), Positives = 243/476 (51%), Gaps = 71/476 (14%)
Query: 170 PVLTNFVMWSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVF 229
P L N ++LVCD+ + T+ + M G+L+G+L+FG + DR GRK T + +L+ +
Sbjct: 121 PSLKN--EFNLVCDRKHLKDTTQSVFMAGLLVGTLMFGPLCDRIGRKATILAQLLLFTLI 178
Query: 230 GTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFL 289
G AF P F + A R V + +G+ L E VGPS R A + FS+G +
Sbjct: 179 GLATAFVPSFELYMALRFAVATAVAGLSFSNVTLLTEWVGPSWRTQAVVLAQCNFSLGQM 238
Query: 290 LIAGLAYFVHDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEEN 349
++AGLAY +WR L I T PGL+ Y+W +PESARWL+++GR +EA +IQ A N
Sbjct: 239 VLAGLAYGFRNWRLLQITGTAPGLLLFFYFWALPESARWLLTRGRMDEAIQLIQKAASVN 298
Query: 350 KVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLT 409
+ L SPE +L + GP + +LFRHP L K ++IIF +WFV SL
Sbjct: 299 RRKL-----------SPELMNQLVPEKTGPSGNALDLFRHPQLRKVTLIIFCVWFVDSLG 347
Query: 410 YYGLSWNTANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVS 469
YYGLS + G ++YL +I G VE+PA SS+ + R+GRK L+L GL I+
Sbjct: 348 YYGLSLQVGDFGLDVYLTQLIFGAVEVPARCSSIFMMQRFGRKWSQLGTLVLGGLMCIII 407
Query: 470 ALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFA 529
+P DL V +LA++GK A+ Y++SAE FPT++R G+G F+R+GGI
Sbjct: 408 IFIPADLPVVVTMLAVVGKMATAAAFTISYVYSAELFPTILRQTGMGLVGIFSRIGGILT 467
Query: 530 SYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVILIDQVFLLQV 589
+L EY+ +
Sbjct: 468 PLVILLG-----------EYHAA------------------------------------- 479
Query: 590 EIWLPLPFLMFGVLSLTAGILSLILPETHHKKLPESIADGENFGKVLGPIQGVPRT 645
LP L++G L + AG+L +LPETH + L +++ D E LGP P++
Sbjct: 480 -----LPMLIYGSLPIVAGLLCTLLPETHGQGLKDTLQDLE-----LGPHPRSPKS 525
|
Homo sapiens (taxid: 9606) |
| >sp|Q9WTN6|S22AL_MOUSE Solute carrier family 22 member 21 OS=Mus musculus GN=Slc22a21 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 267 bits (683), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 145/365 (39%), Positives = 218/365 (59%), Gaps = 11/365 (3%)
Query: 178 WSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAP 237
W LVC W + +F +GVLLGS I G +SDRFGRK +++ + F + F+
Sbjct: 132 WDLVCKDDWKAPLTTSFFYVGVLLGSFISGQLSDRFGRKNILFLTMAMHTGFSFIQVFSV 191
Query: 238 DFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTV-IHMFFSIGFLLIAGLAY 296
+F FT +VG ++ A+VL EM+ S RII T+ + +FF+ GF+++ AY
Sbjct: 192 NFEMFTLLYTLVGMGHISNYVAAFVLGTEMLSKSVRIIFATLGVCIFFAFGFMVLPLFAY 251
Query: 297 FVHDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGF 356
F+ +WR L + +TLPG++ A WWFIPES RWLIS+GR +EA++II+ A+ N ++
Sbjct: 252 FIREWRRLLLAITLPGVLCGALWWFIPESPRWLISQGRIKEAEVIIRKAAKINGIVAPST 311
Query: 357 VLDGLLAPSPEEEEKLKAQNDGPKPS---IFELFRHPNLFKKSVIIFFLWFVCSLTYYGL 413
+ D P E KL+ + KP I++L R PN+ +++ LW S+ Y+GL
Sbjct: 312 IFD------PSETNKLQ-DDSSKKPQSHHIYDLVRTPNIRILTIMSIILWLTISVGYFGL 364
Query: 414 SWNTANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLP 473
S +T NL GNIY+N + VE+PAY+ + L L R+ + L L G L++ L+P
Sbjct: 365 SLDTPNLNGNIYVNCFLLAAVEVPAYVLAWLLLQHVSRRYSMAGSLFLGGSVLLLVQLVP 424
Query: 474 LDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTS 533
DL+ +S L M+GKF IT AY VY+++AE +PTV+RN+G+G ST +R+G I + Y
Sbjct: 425 SDLHYLSTTLVMVGKFGITSAYSMVYVYTAELYPTVVRNMGVGVSSTASRLGSILSPYFV 484
Query: 534 VLEAF 538
L A+
Sbjct: 485 YLGAY 489
|
Sodium-ion independent, medium affinity carnitine transporter. Also transports organic cations such as tetraethylammonium (TEA) without the involvement of sodium. Relative uptake activity ratio of carnitine to TEA is 746. Mus musculus (taxid: 10090) |
| >sp|O76082|S22A5_HUMAN Solute carrier family 22 member 5 OS=Homo sapiens GN=SLC22A5 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 262 bits (670), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 146/395 (36%), Positives = 233/395 (58%), Gaps = 14/395 (3%)
Query: 151 PSLYIDLNQTIQYS-----RSTQEPVLTNFVM-WSLVCDKAWYRGTSDAFLMMGVLLGSL 204
P +DL Q Q S +Q+ L+ V W+LVC+ W + + +GVLLGS
Sbjct: 99 PGRDVDLGQLEQESCLDGWEFSQDVYLSTIVTEWNLVCEDDWKAPLTISLFFVGVLLGSF 158
Query: 205 IFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264
I G +SDRFGRK +++ + F L F+ +F F ++VG ++ A+VL
Sbjct: 159 ISGQLSDRFGRKNVLFVTMGMQTGFSFLQIFSKNFEMFVVLFVLVGMGQISNYVAAFVLG 218
Query: 265 LEMVGPSKRIIAGTV-IHMFFSIGFLLIAGLAYFVHDWRHLDILVTLPGLIYLAYWWFIP 323
E++G S RII T+ + +F++ G++++ AYF+ DWR L + +T+PG++ +A WWFIP
Sbjct: 219 TEILGKSVRIIFSTLGVCIFYAFGYMVLPLFAYFIRDWRMLLVALTMPGVLCVALWWFIP 278
Query: 324 ESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSI 383
ES RWLIS+GR EEA++II+ A+ N +++ + D P E + L ++ +I
Sbjct: 279 ESPRWLISQGRFEEAEVIIRKAAKANGIVVPSTIFD------PSELQDLSSKKQQSH-NI 331
Query: 384 FELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNTANLGGNIYLNFIISGMVEIPAYLSSM 443
+L R N+ +++ LW S+ Y+GLS +T NL G+I++N +S MVE+PAY+ +
Sbjct: 332 LDLLRTWNIRMVTIMSIMLWMTISVGYFGLSLDTPNLHGDIFVNCFLSAMVEVPAYVLAW 391
Query: 444 LTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSA 503
L L R+ + L L G L+ L+P DL ++ VL M+GKF +T A+ VY+++A
Sbjct: 392 LLLQYLPRRYSMATALFLGGSVLLFMQLVPPDLYYLATVLVMVGKFGVTAAFSMVYVYTA 451
Query: 504 EQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAF 538
E +PTV+RN+G+G ST +R+G I + Y L A+
Sbjct: 452 ELYPTVVRNMGVGVSSTASRLGSILSPYFVYLGAY 486
|
Sodium-ion dependent, high affinity carnitine transporter. Involved in the active cellular uptake of carnitine. Transports one sodium ion with one molecule of carnitine. Also transports organic cations such as tetraethylammonium (TEA) without the involvement of sodium. Also relative uptake activity ratio of carnitine to TEA is 11.3. Homo sapiens (taxid: 9606) |
| >sp|Q63089|S22A1_RAT Solute carrier family 22 member 1 OS=Rattus norvegicus GN=Slc22a1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 257 bits (656), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 150/459 (32%), Positives = 235/459 (51%), Gaps = 67/459 (14%)
Query: 179 SLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPD 238
+LVC AW + + +G LGSL+ G I+DRFGRK +++ L+ V G L A APD
Sbjct: 140 NLVCGDAWKVDLFQSCVNLGFFLGSLVVGYIADRFGRKLCLLVTTLVTSVSGVLTAVAPD 199
Query: 239 FWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV 298
+ + RL+ G + G ++ Y L E VG R + M F++G + +AG+AY +
Sbjct: 200 YTSMLLFRLLQGMVSKGSWVSGYTLITEFVGSGYRRTTAILYQMAFTVGLVGLAGVAYAI 259
Query: 299 HDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVL 358
DWR L + V+LP ++L Y+WF+PES RWL+S+ R A I++ +A++N +
Sbjct: 260 PDWRWLQLAVSLPTFLFLLYYWFVPESPRWLLSQKRTTRAVRIMEQIAQKNGKV------ 313
Query: 359 DGLLAPSPEEEEKLKAQNDGPK---PSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSW 415
P + + L + D + PS +LFR PNL K +VI+ +LWF C++ Y GL
Sbjct: 314 ------PPADLKMLCLEEDASEKRSPSFADLFRTPNLRKHTVILMYLWFSCAVLYQGLIM 367
Query: 416 NTANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLD 475
+ G N+YL+F S +VE PA ++T+DR GR + +++G ++ +P +
Sbjct: 368 HVGATGANLYLDFFYSSLVEFPAAFIILVTIDRIGRIYPIAASNLVTGAACLLMIFIPHE 427
Query: 476 LNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535
L+ +++ LA +G+ T V + +AE +PT IRN+G+ S +GGIF +
Sbjct: 428 LHWLNVTLACLGRMGATIVLQMVCLVNAELYPTFIRNLGMMVCSALCDLGGIFTPF---- 483
Query: 536 EAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVILIDQVFLLQVEIWLPL 595
VF L +E+W L
Sbjct: 484 -----------------------------------------------MVFRL-MEVWQAL 495
Query: 596 PFLMFGVLSLTAGILSLILPETHHKKLPESIADGENFGK 634
P ++FGVL LTAG ++L+LPET LPE+I + EN G+
Sbjct: 496 PLILFGVLGLTAGAMTLLLPETKGVALPETIEEAENLGR 534
|
Translocates a broad array of organic cations with various structures and molecular weights including the model compounds 1-methyl-4-phenylpyridinium (MPP), tetraethylammonium (TEA), N-1-methylnicotinamide (NMN), 4-(4-(dimethylamino)styryl)-N-methylpyridinium (ASP), the endogenous compounds choline, guanidine, histamine, epinephrine, adrenaline, noradrenaline and dopamine, and the drugs quinine, and metformin. The transport of organic cations is inhibited by a broad array of compounds like tetramethylammonium (TMA), cocaine, lidocaine, NMDA receptor antagonists, atropine, prazosin, cimetidine, TEA and NMN, guanidine, cimetidine, choline, procainamide, quinine, tetrabutylammonium, and tetrapentylammonium. Translocates organic cations in an electrogenic and pH-independent manner. Translocates organic cations across the plasma membrane in both directions. Transports the polyamines spermine and spermidine. Transports pramipexole across the basolateral membrane of the proximal tubular epithelial cells. The choline transport is activated by MMTS. Regulated by various intracellular signaling pathways including inhibition by protein kinase A activation, and endogenously activation by the calmodulin complex, the calmodulin-dependent kinase II and LCK tyrosine kinase. Rattus norvegicus (taxid: 10116) |
| >sp|Q9H015|S22A4_HUMAN Solute carrier family 22 member 4 OS=Homo sapiens GN=SLC22A4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 256 bits (655), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 165/488 (33%), Positives = 251/488 (51%), Gaps = 69/488 (14%)
Query: 151 PSLYIDLNQTIQYS-----RSTQEPVLTNFVM-WSLVCDKAWYRGTSDAFLMMGVLLGSL 204
P +DL Q Q S +Q+ L+ V W+LVC+ W + + +GVLLGS
Sbjct: 99 PGRDVDLGQLEQESCLDGWEFSQDVYLSTVVTEWNLVCEDNWKVPLTTSLFFVGVLLGSF 158
Query: 205 IFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264
+ G +SDRFGRK ++ + F L F+ + FT +IVG ++VA++L
Sbjct: 159 VSGQLSDRFGRKNVLFATMAVQTGFSFLQIFSISWEMFTVLFVIVGMGQISNYVVAFILG 218
Query: 265 LEMVGPSKRIIAGTV-IHMFFSIGFLLIAGLAYFVHDWRHLDILVTLPGLIYLAYWWFIP 323
E++G S RII T+ + FF++G++L+ AYF+ DWR L + +T+PG++ + WWFIP
Sbjct: 219 TEILGKSVRIIFSTLGVCTFFAVGYMLLPLFAYFIRDWRMLLLALTVPGVLCVPLWWFIP 278
Query: 324 ESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSI 383
ES RWLIS+ R EA+ IIQ A+ N + + + D S EE LK Q K I
Sbjct: 279 ESPRWLISQRRFREAEDIIQKAAKMNNIAVPAVIFD-----SVEELNPLKQQ----KAFI 329
Query: 384 FELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNTANLGGNIYLNFIISGMVEIPAYLSSM 443
+LFR N+ +++ LW + S+ Y+ LS + NL G+ YLN +S ++EIPAY+++
Sbjct: 330 LDLFRTRNIAIMTIMSLLLWMLTSVGYFALSLDAPNLHGDAYLNCFLSALIEIPAYITAW 389
Query: 444 LTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSA 503
L L R+ + L G L+ L+P+D +SI L M+GKF IT A+ +Y+F+A
Sbjct: 390 LLLRTLPRRYIIAAVLFWGGGVLLFIQLVPVDYYFLSIGLVMLGKFGITSAFSMLYVFTA 449
Query: 504 EQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITY 563
E +PT++RN+ +G ST +RVG I A Y YLG Y
Sbjct: 450 ELYPTLVRNMAVGVTSTASRVGSIIAPY--------FVYLG-----------------AY 484
Query: 564 KTMPKEQITRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSLILPETHHKKLP 623
M LP+++ G L++ GIL+L PE+ LP
Sbjct: 485 NRM----------------------------LPYIVMGSLTVLIGILTLFFPESLGMTLP 516
Query: 624 ESIADGEN 631
E++ +
Sbjct: 517 ETLEQMQK 524
|
Sodium-ion dependent, low affinity carnitine transporter. Probably transports one sodium ion with one molecule of carnitine. Also transports organic cations such as tetraethylammonium (TEA) without the involvement of sodium. Relative uptake activity ratio of carnitine to TEA is 1.78. A key substrate of this transporter seems to be ergothioneine (ET). Homo sapiens (taxid: 9606) |
| >sp|A9CB25|S22A4_PAPAN Solute carrier family 22 member 4 OS=Papio anubis GN=SLC22A4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 254 bits (650), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 165/488 (33%), Positives = 250/488 (51%), Gaps = 69/488 (14%)
Query: 151 PSLYIDLNQTIQYS-----RSTQEPVLTNFVM-WSLVCDKAWYRGTSDAFLMMGVLLGSL 204
P +DL Q Q S +Q+ + V W+LVC+ W + + +GVLLGS
Sbjct: 99 PGRDVDLGQLEQESCLDGWEFSQDVYWSTVVTEWNLVCEDNWKVPLTTSLFFVGVLLGSF 158
Query: 205 IFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264
+ G +SDRFGRK ++ + F L F+ + FT LIVG ++VA++L
Sbjct: 159 VSGQLSDRFGRKNVLFATMAVQTGFSFLQIFSISWEMFTVLFLIVGMGQISNYVVAFILG 218
Query: 265 LEMVGPSKRIIAGTV-IHMFFSIGFLLIAGLAYFVHDWRHLDILVTLPGLIYLAYWWFIP 323
E++G S RII T+ + FF++G++L+ AYF+ DWR L + +T+PG++ + WWFIP
Sbjct: 219 TEILGKSVRIIFSTLGVCTFFAVGYMLLPLFAYFIRDWRMLLLALTVPGVLCVPLWWFIP 278
Query: 324 ESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSI 383
ES RWLIS+ R EA+ IIQ A+ N + + + D S EE LK Q K I
Sbjct: 279 ESPRWLISQRRFREAEDIIQKAAKMNNIAVPAVIFD-----SVEELNPLKQQ----KAFI 329
Query: 384 FELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNTANLGGNIYLNFIISGMVEIPAYLSSM 443
+LFR N+ +++ LW + S+ Y+ LS +T NL G+ YLN +S ++EIPAY+++
Sbjct: 330 LDLFRTWNIAIMTIMSLLLWMLTSVGYFALSLDTPNLHGDAYLNCFLSALIEIPAYITAW 389
Query: 444 LTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSA 503
L L R+ + L G L+ L+P+D +SI L M+GKF IT A+ +Y+F+A
Sbjct: 390 LLLRTLPRRYIIAAVLFWGGGVLLFIQLVPVDYYFLSIGLVMLGKFGITSAFSMLYVFTA 449
Query: 504 EQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITY 563
E +PT++RN+ +G S +RVG I A Y YLG Y
Sbjct: 450 ELYPTMVRNMAVGVTSMASRVGSIIAPY--------FVYLG-----------------AY 484
Query: 564 KTMPKEQITRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSLILPETHHKKLP 623
M LP+++ G L++ GIL+L PE+ LP
Sbjct: 485 NRM----------------------------LPYIVMGSLTVLIGILTLFFPESLGMTLP 516
Query: 624 ESIADGEN 631
E++ +
Sbjct: 517 ETLEQMQK 524
|
Sodium-ion dependent, low affinity carnitine transporter. Probably transports one sodium ion with one molecule of carnitine. Also transports organic cations such as tetraethylammonium (TEA) without the involvement of sodium. Relative uptake activity ratio of carnitine to TEA is 1.78. A key substrate of this transporter seems to be ergothioneine (ET). Papio anubis (taxid: 9555) |
| >sp|Q66KG0|S22AG_XENLA Solute carrier family 22 member 16 OS=Xenopus laevis GN=slc22a16 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 253 bits (647), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 143/501 (28%), Positives = 252/501 (50%), Gaps = 66/501 (13%)
Query: 144 RRLGDKVPSLYIDLNQTI-------QYSRSTQEPVLTNFVMWSLVCDKAWYRGTSDAFLM 196
+R + + D N+T+ Y +S E + W LVCD+ W M
Sbjct: 98 KREDASYLTYFYDGNKTLFSCSNGYHYDKSNLESSIVT--EWDLVCDREWLAKLIQPIFM 155
Query: 197 MGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGV 256
+GVL+G++IFGDI+DR GR+P I+ +FG AF D+++F R ++ +SG
Sbjct: 156 LGVLIGAVIFGDIADRVGRRPIIWITSTGQFLFGIAVAFTFDYYSFVIVRFLLAMVSSGY 215
Query: 257 FLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHDWRHLDILVTLPGLIYL 316
++V +V E VG R A +H FF++G ++++ + + V W I+++L L ++
Sbjct: 216 YVVVFVYLTEYVGIKARTWASMHVHAFFAVGVMIVSLVGFLVRTWWIYQIILSLTTLPFV 275
Query: 317 AYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQN 376
W +PE+ WL S+G+ +E + +I+ + + NK+ L P +E + N
Sbjct: 276 LCCWMLPETPFWLYSQGKYKEVEKLIRTIEKWNKISTPC----KLSELCPAQETHVDQPN 331
Query: 377 DGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNTANLGGNIYLNFIISGMVEI 436
++ +LF + + ++++ ++ +WF SL YY + N+ NLGGN YLN ++G VEI
Sbjct: 332 TLKNHNVLDLFYNWSFARRTITVWLIWFTGSLGYYVFALNSVNLGGNEYLNLFLTGAVEI 391
Query: 437 PAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYG 496
P+Y+ + L +D+ GR+N L P LI+S + V L+P D +TV+I ++M GKF I A+G
Sbjct: 392 PSYIVACLGMDKIGRRNTLAPFLIISAVICGVIMLIPQDHSTVTIAMSMAGKFSIAVAFG 451
Query: 497 AVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTIT 556
+Y+++AE +PT++R++ +G+GS R+G + A + L
Sbjct: 452 LIYLYTAELYPTIVRSLAVGSGSMMCRIGSVVAPFCVYL--------------------- 490
Query: 557 KKCLITYKTMPKEQITRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSLILPE 616
++W+ +P ++ G+++ GIL+L LPE
Sbjct: 491 --------------------------------TDVWIFMPQMLVGIMAFLTGILTLTLPE 518
Query: 617 THHKKLPESIADGENFGKVLG 637
T L ++ + G G
Sbjct: 519 TLGIPLTSTMEEAAEMGTTSG 539
|
High affinity carnitine transporter. Xenopus laevis (taxid: 8355) |
| >sp|Q6A4L0|S22AD_MOUSE Solute carrier family 22 member 13 OS=Mus musculus GN=Slc22a13 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 252 bits (644), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 160/473 (33%), Positives = 243/473 (51%), Gaps = 71/473 (15%)
Query: 178 WSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAP 237
+ LVCD+ + TS + M G+L+G+L+FG + D GR+P+ ++ +L+ + AF
Sbjct: 127 FDLVCDRKNLKKTSQSVFMAGLLVGALVFGPVCDWIGRRPSLLMQVLLSGITSMATAFVS 186
Query: 238 DFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYF 297
F + A R ++ + +G L VL E VGPS R A + ++G +++AGLAY
Sbjct: 187 SFELYLALRFVLATANAGFLLSTNVLISEWVGPSWRTQAVVLAQSNVALGQMVLAGLAYG 246
Query: 298 VHDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFV 357
V +WR L I T P L+ Y+W +PES RWL+S+GR EEAK ++Q A N L
Sbjct: 247 VRNWRLLQITGTAPVLLLFFYFWVLPESPRWLLSQGRTEEAKQLVQKAALVNGRPL---- 302
Query: 358 LDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNT 417
SPE +L + GP + +LFRHP+L K ++I+ +WFV SL YY LS+
Sbjct: 303 -------SPELLNQLVPEKTGPSGNALDLFRHPHLRKVTLILIAVWFVDSLVYYSLSFQV 355
Query: 418 ANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRK-NFLCPCLILSGLCLIVSALLPLDL 476
+ G +IY+ +I G VE+P S+L +++ GRK + LC L L+G+ I+ +P DL
Sbjct: 356 GDFGLDIYVTQLIFGAVEMPGRFLSVLMMEKLGRKWSQLC-TLTLAGIMYIIIIFIPGDL 414
Query: 477 NTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLE 536
TV VLA++GKF A+ Y+++AE FPT+IR G+G S F+RVGGI +LE
Sbjct: 415 PTVVTVLAVVGKFASAAAFTISYVYTAELFPTIIRQTGMGLVSIFSRVGGIITPLVMLLE 474
Query: 537 AFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVILIDQVFLLQVEIWLPLP 596
+Y+ + +P
Sbjct: 475 -----------QYHQA------------------------------------------IP 481
Query: 597 FLMFGVLSLTAGILSLILPETHHKKLPESIADGENFGKVLGPIQGVPRTTVQR 649
++FG L + AG+L +LPET + L +++ D E G G +T QR
Sbjct: 482 MVIFGSLPIGAGLLCALLPETRGQTLKDTLQDLEQ-----GLPAGSHKTAPQR 529
|
Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 690 | ||||||
| 170030642 | 569 | organic cation transporter protein [Cule | 0.692 | 0.840 | 0.458 | 1e-143 | |
| 157132472 | 578 | sugar transporter [Aedes aegypti] gi|108 | 0.694 | 0.828 | 0.459 | 1e-142 | |
| 347971675 | 587 | AGAP004309-PA [Anopheles gambiae str. PE | 0.689 | 0.810 | 0.446 | 1e-137 | |
| 195444372 | 559 | GK11735 [Drosophila willistoni] gi|19416 | 0.717 | 0.885 | 0.441 | 1e-133 | |
| 312381476 | 582 | hypothetical protein AND_06224 [Anophele | 0.692 | 0.821 | 0.44 | 1e-133 | |
| 307192073 | 573 | Organic cation transporter protein [Harp | 0.7 | 0.842 | 0.446 | 1e-131 | |
| 195390737 | 556 | GJ24209 [Drosophila virilis] gi|19415211 | 0.695 | 0.863 | 0.434 | 1e-131 | |
| 1934852 | 548 | putative organic cation transporter [Dro | 0.707 | 0.890 | 0.431 | 1e-129 | |
| 195060836 | 559 | GH14185 [Drosophila grimshawi] gi|193891 | 0.695 | 0.858 | 0.425 | 1e-127 | |
| 332026967 | 569 | Organic cation transporter protein [Acro | 0.691 | 0.838 | 0.416 | 1e-126 |
| >gi|170030642|ref|XP_001843197.1| organic cation transporter protein [Culex quinquefasciatus] gi|167867873|gb|EDS31256.1| organic cation transporter protein [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 264/576 (45%), Positives = 357/576 (61%), Gaps = 98/576 (17%)
Query: 62 RCALPNE--QDIAYFTPLSPNASSLSYPWDSVQKSYSSCVRYDANFTPEYYAGGQSANNT 119
RC LP E ++ Y P P+ +++YP DS+ K YS+C DAN+T Y+ GG A
Sbjct: 48 RCRLPFEIGNNVTYELP--PDVLAMAYPMDSLSKKYSTCSYLDANYTETYFNGGTPAKEV 105
Query: 120 VPCDRWLFDPEWNTTVSEVLMVFHRRLGDKVPSLYIDLNQTIQYSRSTQEPVLTNFVMWS 179
V CDRW++D +Y ST W
Sbjct: 106 VNCDRWIYDRS-------------------------------RYESST-------VTDWD 127
Query: 180 LVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDF 239
+VCD+ W R ++D+ M+GV+LGS+IFG +SD++GRKP F S++ +FG LA AP+F
Sbjct: 128 MVCDRNWLRASADSLFMVGVMLGSIIFGYLSDKYGRKPIFFASLVTQVIFGVLAGLAPEF 187
Query: 240 WTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH 299
+T+T R++VGA+TSGVFLVAYV+A+EMVGP R+ AG V MFFS+G++L A AYF+H
Sbjct: 188 FTYTIARILVGATTSGVFLVAYVIAMEMVGPKDRLYAGVVCMMFFSVGYMLTAAFAYFIH 247
Query: 300 DWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLD 359
DWR L I +TLPG+++L+YWWFIPES+RWLIS R EA +IQ VA+ NKV + VLD
Sbjct: 248 DWRSLQIALTLPGILFLSYWWFIPESSRWLISNNRPTEAITLIQKVAKSNKVTVPSDVLD 307
Query: 360 GLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNTAN 419
L+ E++ L++ + PKPS+ ++F+HPNL +K+++IFF WFV S TYYGLSWNT N
Sbjct: 308 KLVE---EDKAALESDKNEPKPSLLDVFKHPNLRRKALLIFFDWFVNSGTYYGLSWNTNN 364
Query: 420 LGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTV 479
LGGN LNF+ISG VEIPAY +LTL+R+GR+ LC C+I +G L+ + +P D++ +
Sbjct: 365 LGGNPLLNFVISGAVEIPAYSFLLLTLNRWGRRTILCGCMIFAGTMLLSTMFVPSDMSWL 424
Query: 480 SIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFP 539
+VLAM+GK IT +YG VY+FSAEQFPTVIRN+ +GA ST ARVGGI A Y ++L +
Sbjct: 425 IVVLAMLGKLAITSSYGTVYVFSAEQFPTVIRNVALGAASTSARVGGILAPYFNLLGDY- 483
Query: 540 LSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVILIDQVFLLQVEIWLPLPFLM 599
W PLP L+
Sbjct: 484 ----------------------------------------------------WQPLPLLI 491
Query: 600 FGVLSLTAGILSLILPETHHKKLPESIADGENFGKV 635
FG ++ G+LSL+LPETH++KLPE+IADGENFGKV
Sbjct: 492 FGAMAFAGGLLSLLLPETHNQKLPETIADGENFGKV 527
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157132472|ref|XP_001662579.1| sugar transporter [Aedes aegypti] gi|108871163|gb|EAT35388.1| AAEL012443-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 512 bits (1319), Expect = e-142, Method: Compositional matrix adjust.
Identities = 264/574 (45%), Positives = 352/574 (61%), Gaps = 95/574 (16%)
Query: 62 RCALPNEQDIAYFTPLSPNASSLSYPWDSVQKSYSSCVRYDANFTPEYYAGGQSANNTVP 121
RC LP E D + L P S++YP DS K YS+C DANFT EY GG A
Sbjct: 48 RCQLPFEADNVTYQ-LPPELMSMAYPMDSFSKKYSTCTYLDANFTDEYMNGGTPAKEVAS 106
Query: 122 CDRWLFDPEWNTTVSEVLMVFHRRLGDKVPSLYIDLNQTIQYSRSTQEPVLTNFVMWSLV 181
CD W++D RS E + W LV
Sbjct: 107 CDHWIYD------------------------------------RSKFES--STVTEWDLV 128
Query: 182 CDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWT 241
CD+ W R ++D+ M+GV+LGS+IFG +SD++GRKP F S++ +FG LA AP+F+T
Sbjct: 129 CDRNWLRASADSLFMVGVMLGSIIFGWLSDKYGRKPIFFASLVTQVIFGVLAGIAPEFFT 188
Query: 242 FTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHDW 301
+T R++VGA+TSGVFLVAYV+A+EMVGP R+ AG V MFFS+G++L AG AYF+HDW
Sbjct: 189 YTIARILVGATTSGVFLVAYVIAMEMVGPKDRLYAGVVCMMFFSVGYMLTAGFAYFIHDW 248
Query: 302 RHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGL 361
R L I +TLPG++++ YWW IPES+RWLIS R EA +I+ VA+ NKV + VLD L
Sbjct: 249 RTLQIALTLPGILFMTYWWLIPESSRWLISNNRPSEAITLIKKVAKSNKVTVPEDVLDKL 308
Query: 362 LAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNTANLG 421
+ E++ L++ + PKPS+ ++F+HPNL +K+++IFF WFV S TYYGLSWNT NLG
Sbjct: 309 VE---EDKAALESDKNEPKPSLIDVFKHPNLRRKALLIFFDWFVNSGTYYGLSWNTNNLG 365
Query: 422 GNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSI 481
GN LNF+ISG VEIPAY +LTL+R+GR+ LC C+I +G+ L+ + L+P ++ + +
Sbjct: 366 GNPLLNFVISGFVEIPAYSFLLLTLNRWGRRTILCGCMIFAGVMLLSTMLVPSNMPWLIV 425
Query: 482 VLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLS 541
VLAM+GK IT +YG VY+FSAEQFPTVIRN+ +GA ST ARVGGI A Y ++L +
Sbjct: 426 VLAMLGKLAITSSYGTVYVFSAEQFPTVIRNVALGAASTSARVGGILAPYFNLLGDY--- 482
Query: 542 YLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVILIDQVFLLQVEIWLPLPFLMFG 601
W PLP L+FG
Sbjct: 483 --------------------------------------------------WKPLPLLIFG 492
Query: 602 VLSLTAGILSLILPETHHKKLPESIADGENFGKV 635
++ G+LSL+LPETH++KLPE+IADGENFGKV
Sbjct: 493 AMAFAGGLLSLMLPETHNQKLPETIADGENFGKV 526
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|347971675|ref|XP_313581.5| AGAP004309-PA [Anopheles gambiae str. PEST] gi|333468979|gb|EAA09218.5| AGAP004309-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 257/575 (44%), Positives = 351/575 (61%), Gaps = 99/575 (17%)
Query: 62 RCALPNEQDIAYFTPLSPNASSLSYPWDSVQKSYSSCVRYDANFTPEYYAGGQSANNTVP 121
RC LP E + A + P+ +L+YP D++ +S+C DANFT +Y+AGG A P
Sbjct: 48 RCRLPYELENATY-PMPDERITLAYPIDTLTGKFSTCNYLDANFTDDYWAGGTPAAGVRP 106
Query: 122 CDRWLFDPEWNTTVSEVLMVFHRRLGDKVPSLYIDLNQTIQYSRSTQEPVLTNFVMWSLV 181
C+ W++D ++ ST W +V
Sbjct: 107 CNHWVYD-------------------------------RTKFESST-------VTDWDMV 128
Query: 182 CDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWT 241
CD+ W R ++D+ M+GV+LGS+ FG +SD++GRKP F S+++ +FG LA AP+F T
Sbjct: 129 CDRNWLRASADSLFMVGVMLGSIGFGYLSDKYGRKPIFFASLVLQVIFGVLAGIAPEFLT 188
Query: 242 FTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHDW 301
+T R++VGA+TSGVFLVAYV+A+EMVGPS R+ AG V MFFS+G++L A AYF+H W
Sbjct: 189 YTLARMVVGATTSGVFLVAYVIAMEMVGPSDRLYAGVVCMMFFSVGYMLTAAFAYFIHGW 248
Query: 302 RHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGL 361
R L I +TLPG+++L YW FIPESARWL+S GR EA +I+ +A+ NK+ + LD L
Sbjct: 249 RMLQIALTLPGVLFLCYWLFIPESARWLLSNGRPTEAITLIEKIAKCNKLTVPQEALDKL 308
Query: 362 LAPSPEEEEKLKAQNDG--PKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNTAN 419
+ EE+K + Q D PKPS+ ++F+HPNL +K+++IFF WFV SLTYYGLSWNT N
Sbjct: 309 V-----EEDKAQQQEDTNEPKPSLLDIFKHPNLRRKAMLIFFDWFVNSLTYYGLSWNTNN 363
Query: 420 LGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTV 479
LGGN LNF+ISG VEIPAY ++TL+R+GR+ LC C+I +G+ L+ + +P +
Sbjct: 364 LGGNPLLNFVISGAVEIPAYSFLLVTLNRWGRRTILCGCMIFAGMMLLTTMAVPASQQWL 423
Query: 480 SIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFP 539
+VLAM+GK IT +YG VY+FSAEQFPTVIRN+ +GA ST ARVGGI A Y ++L +
Sbjct: 424 IVVLAMLGKMAITSSYGTVYVFSAEQFPTVIRNVALGASSTSARVGGILAPYFNLLGDY- 482
Query: 540 LSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVILIDQVFLLQVEIWLPLPFLM 599
W PLP L+
Sbjct: 483 ----------------------------------------------------WQPLPLLI 490
Query: 600 FGVLSLTAGILSLILPETHHKKLPESIADGENFGK 634
FG L+ G+LSL+LPETH++KLPE+IADGENFGK
Sbjct: 491 FGALAFVGGVLSLLLPETHNQKLPETIADGENFGK 525
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195444372|ref|XP_002069836.1| GK11735 [Drosophila willistoni] gi|194165921|gb|EDW80822.1| GK11735 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 483 bits (1243), Expect = e-133, Method: Compositional matrix adjust.
Identities = 262/594 (44%), Positives = 353/594 (59%), Gaps = 99/594 (16%)
Query: 62 RCALPNEQD-IAYFTPLSPNASSLSYPWDSVQKSYSSCVRYDANFTPEYYAGGQ--SANN 118
RC LP E D A F L L+YP DSV S+C Y+ +T +Y +G + + N
Sbjct: 48 RCQLPFENDETAQFLSLPEEKWYLAYPKDSVTGKISTCEYYNVAYTEDYLSGSEPFTQNG 107
Query: 119 TVPCD-RWLFDPE--WNTTVSEVLMVFHRRLGDKVPSLYIDLNQTIQYSRSTQEPVLTNF 175
TV C R+L+D N+ V+E
Sbjct: 108 TVECSSRYLYDQSKYLNSAVTE-------------------------------------- 129
Query: 176 VMWSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAF 235
W +VC ++ +SD+ M+GVLLGS FG +SD+ GRKPTF S++I +FG LAA
Sbjct: 130 --WDMVCQRSLMSASSDSLFMLGVLLGSFGFGQMSDKLGRKPTFFASLVIQLIFGVLAAL 187
Query: 236 APDFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLA 295
+P+++T+T R+IVGA+TSGVFLVAYV+ALEMVGPS R+ AGTV+ MFFSIGF+LI A
Sbjct: 188 SPEYFTYTISRMIVGATTSGVFLVAYVIALEMVGPSYRLFAGTVMQMFFSIGFMLIPLFA 247
Query: 296 YFVHDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEG 355
YF+HDWR L I +TLPGL++L Y+W +PESARWL+SKGR EE+ +II+ A+ NKV +
Sbjct: 248 YFIHDWRWLQIALTLPGLVFLCYYWLVPESARWLLSKGRKEESFVIIEKAAKVNKVEIPS 307
Query: 356 FVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSW 415
+ D L+ E++++ + + P S+ +L R+PNL +K+++IFF WFV S YYGLSW
Sbjct: 308 QIYDQLVEEVAEKKKQDELASSQPAASVLDLLRYPNLRRKTLLIFFDWFVNSGVYYGLSW 367
Query: 416 NTANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLD 475
NT NLGGN +NF+ISG VEIPAY + TL+R+GR+ LC ++++G+ L+++ ++P D
Sbjct: 368 NTNNLGGNQLVNFMISGAVEIPAYTLLLFTLNRWGRRTILCGTMVVAGISLLLTIIVPSD 427
Query: 476 LNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535
+N + IV AM+GK IT +YG +YIFSAEQFPTV+RN+ +GA S ARVGGI A Y
Sbjct: 428 MNWLIIVFAMIGKMAITSSYGTIYIFSAEQFPTVVRNVALGASSMMARVGGILAPY---- 483
Query: 536 EAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVILIDQVFLLQVEIWLPL 595
L LG EIW PL
Sbjct: 484 ----LKLLG---------------------------------------------EIWQPL 494
Query: 596 PFLMFGVLSLTAGILSLILPETHHKKLPESIADGENFGKVLGPIQGVPRTTVQR 649
P ++ G LSLTAG LSL+LPETH+K LPE+I DGENFGK P +Q
Sbjct: 495 PLIICGALSLTAGFLSLLLPETHNKPLPETIEDGENFGKKQQPQAAAETGQMQE 548
|
Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|312381476|gb|EFR27220.1| hypothetical protein AND_06224 [Anopheles darlingi] | Back alignment and taxonomy information |
|---|
Score = 481 bits (1238), Expect = e-133, Method: Compositional matrix adjust.
Identities = 253/575 (44%), Positives = 344/575 (59%), Gaps = 97/575 (16%)
Query: 62 RCALPNEQDIAYFTPLSPNASSLSYPWDSVQKSYSSCVRYDANFTPEYYAGGQSANNTVP 121
RC LP E A + L S++YP D++ + S+C DANFT Y+ G A
Sbjct: 48 RCQLPYELANASYA-LPQERISMAYPIDTLTEKRSTCTFLDANFTDAYWNSGTPAAGVRS 106
Query: 122 CDRWLFDPEWNTTVSEVLMVFHRRLGDKVPSLYIDLNQTIQYSRSTQEPVLTNFVMWSLV 181
CD W++D RS E + W +V
Sbjct: 107 CDHWIYD------------------------------------RSKFES--STVTEWDMV 128
Query: 182 CDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWT 241
C+++W R ++D+ M+GV+LGS+ FG +SD++GRKP F S+++ +FG LA AP+F+T
Sbjct: 129 CERSWLRASADSLFMVGVMLGSIGFGYLSDKYGRKPIFFASLVLQVIFGVLAGIAPEFFT 188
Query: 242 FTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHDW 301
+T R++VGA+TSGVFLVAYV+A+EMVGP R+ AG V MFFS+G++L AG AY++H+W
Sbjct: 189 YTLARMVVGATTSGVFLVAYVIAMEMVGPKDRLYAGVVCMMFFSVGYMLTAGFAYYIHEW 248
Query: 302 RHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGL 361
R L I +TLPG+++L YWWFIPESARWL+S GR EA +I+ A N + + LD L
Sbjct: 249 RMLQIALTLPGVLFLCYWWFIPESARWLLSNGRPTEAITLIERAARCNGLTVPQEALDKL 308
Query: 362 LAPSPEEEEKLKAQNDG--PKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNTAN 419
L E++ +AQ D KPS+ ++F++PNL +K+++IFF WFV SLTYYGLSWNT N
Sbjct: 309 LE---EDKATTQAQEDSSEAKPSLLDIFKYPNLRQKAMLIFFDWFVNSLTYYGLSWNTNN 365
Query: 420 LGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTV 479
LGGN LNF+ISG VEIPAY +LTL+R+GR+ LC C+I +G L+ + +P +
Sbjct: 366 LGGNPLLNFVISGAVEIPAYSFLLLTLNRWGRRTILCGCMIFAGTMLLATMAVPQSQQWL 425
Query: 480 SIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFP 539
+VLAM+GK IT +YG VY+FSAEQFPTVIRN+ +GA ST ARVGGI A Y ++L +
Sbjct: 426 IVVLAMLGKMAITSSYGTVYVFSAEQFPTVIRNVALGASSTSARVGGILAPYFNLLGDY- 484
Query: 540 LSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVILIDQVFLLQVEIWLPLPFLM 599
W PLP L+
Sbjct: 485 ----------------------------------------------------WQPLPLLI 492
Query: 600 FGVLSLTAGILSLILPETHHKKLPESIADGENFGK 634
FG L+ G+LSL+LPETH++KLPE+IADGENFGK
Sbjct: 493 FGALAFIGGVLSLLLPETHNQKLPETIADGENFGK 527
|
Source: Anopheles darlingi Species: Anopheles darlingi Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307192073|gb|EFN75432.1| Organic cation transporter protein [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 476 bits (1225), Expect = e-131, Method: Compositional matrix adjust.
Identities = 257/575 (44%), Positives = 354/575 (61%), Gaps = 92/575 (16%)
Query: 61 SRCALPNE--QDIAYFTPLSPNASSLSYPWDSVQKSYSSCVRYDANFTPEYYAGGQSANN 118
SRC LP+E ++ +F LS + + SYPWDS K +S C+RYD G N+
Sbjct: 47 SRCLLPHEYAENATFF--LSQDILNASYPWDSELKGWSQCLRYDV-------IGALRPND 97
Query: 119 TVPCDRWLFDPEWNTTVSEVLMVFHRRLGDKVPSLYIDLNQTIQYSRSTQEPVLTNFVMW 178
T TV E + R G Y+ +++I S +T E W
Sbjct: 98 T--------------TVDEAIGDHVERGGSSHCKQYV-YDRSIYKSTTTSE--------W 134
Query: 179 SLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPD 238
LVCDKAW R T D+ M+GV+LGS+IFG +SD++GR+P F +S++I V G L A AP+
Sbjct: 135 DLVCDKAWLRATGDSLFMVGVMLGSMIFGGLSDKYGRRPIFFLSLVIQLVGGILVAVAPE 194
Query: 239 FWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV 298
F ++ RLIVG++TSGVFLVAYV+ALEMVGP KR++AG +FF+ G++L AG AYF+
Sbjct: 195 FISYVIFRLIVGSTTSGVFLVAYVIALEMVGPRKRLVAGVGCQLFFTTGYILTAGFAYFI 254
Query: 299 HDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVL 358
DWR L + +T+P + +L YWWFIPESARWL++KGR +EAK ++Q + EN V + L
Sbjct: 255 TDWRMLQVAITVPSIAFLLYWWFIPESARWLLTKGRLQEAKDLLQRASLENGVEMPSEAL 314
Query: 359 DGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNTA 418
+ LL + E+ ++ D KPS+F+LFR+PNL +KS+++FF W V S TYYGLSW+ +
Sbjct: 315 ETLLNNNSED-----SKPDSRKPSLFDLFRYPNLRRKSILLFFNWLVNSGTYYGLSWHAS 369
Query: 419 NLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNT 478
NLGGN Y+NF+ISG+VE+PAY + TL+R+GRK LC C++LSGL L+ + +P D+
Sbjct: 370 NLGGNDYVNFVISGVVEVPAYTFLIFTLNRWGRKIILCGCMLLSGLALLATLFVPADMPW 429
Query: 479 VSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAF 538
+ + LAM+GK IT +YGA+Y+F+AEQFPTVIRN+G+GA STFAR+GG+ A Y + L
Sbjct: 430 LIVCLAMIGKLAITSSYGAIYVFTAEQFPTVIRNVGLGASSTFARIGGVIAPYVNHLS-- 487
Query: 539 PLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVILIDQVFLLQVEIWLPLPFL 598
EIW PLP +
Sbjct: 488 ---------------------------------------------------EIWTPLPLV 496
Query: 599 MFGVLSLTAGILSLILPETHHKKLPESIADGENFG 633
+FG +L G++SL+LPET +KKLPESI DGE FG
Sbjct: 497 IFGSCALFGGLMSLLLPETLNKKLPESIQDGELFG 531
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195390737|ref|XP_002054024.1| GJ24209 [Drosophila virilis] gi|194152110|gb|EDW67544.1| GJ24209 [Drosophila virilis] | Back alignment and taxonomy information |
|---|
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 251/578 (43%), Positives = 347/578 (60%), Gaps = 98/578 (16%)
Query: 62 RCALPNEQ-DIAYFTPLSPNASSLSYPWDSVQKSYSSCVRYDANFTPEYYAGGQSA--NN 118
RC LP+E D A F L L+YP DS+ +C Y+ ++T +Y G +A N
Sbjct: 48 RCLLPHEDPDTARFDTLPRQQWPLAYPNDSITGKPDTCAYYNVSYTEQYLNGNHTAAQNG 107
Query: 119 TVPCDRWLFDPE--WNTTVSEVLMVFHRRLGDKVPSLYIDLNQTIQYSRSTQEPVLTNFV 176
T+ C +++D N+ V+E
Sbjct: 108 TLQCSSYVYDQSKYLNSAVTE--------------------------------------- 128
Query: 177 MWSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFA 236
W +VC ++ TSD+ M+GVLLGS IFG +SD+ GRKPTF S++ +FG +AA A
Sbjct: 129 -WDMVCSRSLLSATSDSLFMVGVLLGSFIFGQMSDKLGRKPTFFASLVTQLIFGVVAAVA 187
Query: 237 PDFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAY 296
PD++T+T RLIVGA+TSGVFLVAYV+A+EMVG S R+ AG + MFFS+GF+L AG AY
Sbjct: 188 PDYFTYTISRLIVGATTSGVFLVAYVIAMEMVGASYRLFAGVAVQMFFSVGFMLTAGFAY 247
Query: 297 FVHDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGF 356
F+HDWR L I +TLPGL+++ Y+W +PESARWL+SKGR EEA +II+ A+ N+V +
Sbjct: 248 FIHDWRWLQIALTLPGLLFMCYYWIVPESARWLLSKGRKEEAFVIIEKAAKVNRVQIPSE 307
Query: 357 VLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWN 416
+ + L+ + E++ K + P S+F+L R+PNL +K+++IFF WFV S YYGLSWN
Sbjct: 308 IYEQLVEEAAEKKRKDELAAAEPSASVFDLLRYPNLRRKTLLIFFDWFVNSGVYYGLSWN 367
Query: 417 TANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDL 476
T NLGGN +NF+ISG VEIP Y + TL+R+GR+ LC ++++G+ L+++ ++P D+
Sbjct: 368 TNNLGGNQLVNFVISGAVEIPGYTLLLFTLNRWGRRTILCGAMLVAGISLLLTIVVPSDM 427
Query: 477 NTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLE 536
N + I AM+GK IT +YG VYIF+AEQFPTV+RN+G+GA S ARVGGI A Y
Sbjct: 428 NWLLIACAMIGKLAITSSYGTVYIFTAEQFPTVVRNVGLGASSMVARVGGILAPY----- 482
Query: 537 AFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVILIDQVFLLQVEIWLPLP 596
L+ LG EIW PLP
Sbjct: 483 ---LNLLG---------------------------------------------EIWRPLP 494
Query: 597 FLMFGVLSLTAGILSLILPETHHKKLPESIADGENFGK 634
++ G LSLTAG++SL+LPET +K +PE+I DGENFGK
Sbjct: 495 LVICGALSLTAGLMSLLLPETLNKPMPETIEDGENFGK 532
|
Source: Drosophila virilis Species: Drosophila virilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|1934852|emb|CAA73031.1| putative organic cation transporter [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 256/593 (43%), Positives = 349/593 (58%), Gaps = 105/593 (17%)
Query: 62 RCALPNEQDIAYFTPLSPNASSLSYPWDSVQKSYSSCVRYDANFTPEYYAGG--QSANNT 119
RCALP E Y LSP+ +LSYP + C YD ++T EY G +S+N T
Sbjct: 48 RCALPYENGSIY--ELSPHLWNLSYPENE------RCSYYDVDYTEEYLNGSIPRSSNET 99
Query: 120 VPCDRWLFDPE--WNTTVSEVLMVFHRRLGDKVPSLYIDLNQTIQYSRSTQEPVLTNFVM 177
C +++D N+ V+E
Sbjct: 100 KTCSSYVYDRSKYLNSAVTE---------------------------------------- 119
Query: 178 WSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAP 237
W+LVC ++ TSD+ M+GVLLGSLIFG +SD+ GRKPTF S+++ +FG LAA AP
Sbjct: 120 WNLVCSRSLLSATSDSLFMLGVLLGSLIFGQMSDKLGRKPTFFASLVLQLIFGVLAAVAP 179
Query: 238 DFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYF 297
+++++T R+IVGA+TSGVFLVAYV+ALEMVG S R+ AG + MFFS+GF+L AG AYF
Sbjct: 180 EYFSYTISRMIVGATTSGVFLVAYVIALEMVGSSYRLFAGVAMQMFFSVGFMLTAGFAYF 239
Query: 298 VHDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFV 357
+HDWR L I +TLPGL++L Y+W IPESARWL+ KGR +EA +II+ A+ENKV + +
Sbjct: 240 IHDWRWLQIAITLPGLLFLCYYWIIPESARWLLMKGRKDEAFVIIEKAAKENKVEVPNEI 299
Query: 358 LDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNT 417
+ L+ E++++ + P ++F+L R+PNL +K+++IFF WFV S YYGLSWNT
Sbjct: 300 YEQLVDEVAEKKKQDEMAASQPAATVFDLLRYPNLRRKTLLIFFDWFVNSGVYYGLSWNT 359
Query: 418 ANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLN 477
NLGGN +NF+ISG VEIP Y TL+R+GR++ LC ++++G+ L+ + +P D+N
Sbjct: 360 NNLGGNQLVNFMISGPVEIPGYTLLFFTLNRWGRRSILCGTMMVAGISLLATIFVPSDMN 419
Query: 478 TVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEA 537
+ + AM+GK IT +YG +YIFSAEQFPTV+RN+G+GA S ARVGGI A Y
Sbjct: 420 WLIVACAMIGKLAITSSYGTIYIFSAEQFPTVVRNVGLGASSMVARVGGILAPY------ 473
Query: 538 FPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVILIDQVFLLQVEIWLPLPF 597
L LG EIW PLP
Sbjct: 474 --LKLLG---------------------------------------------EIWRPLPL 486
Query: 598 LMFGVLSLTAGILSLILPETHHKKLPESIADGENFGKVLGPIQGVPRTTVQRL 650
++ G LSLTAG+LS +LPET +K +PE+I DGENFGK P + Q L
Sbjct: 487 IICGALSLTAGLLSRLLPETLNKPMPETIEDGENFGKKPAPQETAEEGGTQEL 539
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195060836|ref|XP_001995869.1| GH14185 [Drosophila grimshawi] gi|193891661|gb|EDV90527.1| GH14185 [Drosophila grimshawi] | Back alignment and taxonomy information |
|---|
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 246/578 (42%), Positives = 343/578 (59%), Gaps = 98/578 (16%)
Query: 62 RCALPNEQD-IAYFTPLSPNASSLSYPWDSVQKSYSSCVRYDANFTPEYYAGGQS--ANN 118
RC LP+E+ +A + L P L+YP D + ++C Y+ + Y +G S +
Sbjct: 48 RCRLPHEEAPVATYQSLPPAHWLLAYPLDEMTGKLNTCEYYNVAYNDSYLSGNLSDTTSG 107
Query: 119 TVPCDRWLFDPE--WNTTVSEVLMVFHRRLGDKVPSLYIDLNQTIQYSRSTQEPVLTNFV 176
T+ C +L+D N+ V+E
Sbjct: 108 TLTCSSYLYDQSKYRNSAVTE--------------------------------------- 128
Query: 177 MWSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFA 236
W++VC ++ TSD+ M+GVLLGS IFG +SD++GRKPTF S++I VFG A A
Sbjct: 129 -WNMVCGRSLLSATSDSLFMVGVLLGSFIFGHLSDKWGRKPTFFASLVIQLVFGITAGLA 187
Query: 237 PDFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAY 296
PD++T+T RLIVGA+TSGVFLVAYV+A+EMVG S R+ AG + MFFS+GF+L AG AY
Sbjct: 188 PDYFTYTIARLIVGATTSGVFLVAYVIAMEMVGASYRLFAGVTVQMFFSVGFMLTAGFAY 247
Query: 297 FVHDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGF 356
+ DWR L I +TLPGL+++ Y+W IPESARWL+SKGR+EEA +II+ A N+V +
Sbjct: 248 LIRDWRWLQIALTLPGLVFMGYYWLIPESARWLLSKGRSEEAFVIIERAARVNRVQIPSE 307
Query: 357 VLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWN 416
+ D L+ ++E+ + + P S+++L R+PNL +K++IIFF WFV S YYGLSWN
Sbjct: 308 IYDQLVREESAQKEQAQTASQQPSASVWDLLRYPNLRRKTLIIFFDWFVNSGVYYGLSWN 367
Query: 417 TANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDL 476
T NLGGN NF+ SG VEIP Y ++TL+R+GR++ LC ++++G+ L+ + L+P D+
Sbjct: 368 TNNLGGNQLQNFVFSGAVEIPGYSLLLITLNRWGRRSTLCGAMLVAGISLLATVLVPSDM 427
Query: 477 NTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLE 536
N + I AM+GK IT +YG VYIF+AEQFPTV+RN+G+GA S AR+GGI A Y
Sbjct: 428 NWLLITCAMIGKLAITSSYGTVYIFTAEQFPTVVRNVGLGASSMVARIGGILAPY----- 482
Query: 537 AFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVILIDQVFLLQVEIWLPLP 596
L+ LG EIW PLP
Sbjct: 483 ---LNLLG---------------------------------------------EIWRPLP 494
Query: 597 FLMFGVLSLTAGILSLILPETHHKKLPESIADGENFGK 634
++ G LSLTAG++SL+LPET ++ LPE+I D ENFGK
Sbjct: 495 LVICGALSLTAGLMSLLLPETLNRPLPETIEDAENFGK 532
|
Source: Drosophila grimshawi Species: Drosophila grimshawi Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332026967|gb|EGI67063.1| Organic cation transporter protein [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 241/579 (41%), Positives = 340/579 (58%), Gaps = 102/579 (17%)
Query: 61 SRCALPNEQDIAYFTPLSPNASSLSYPWDSVQKSYSSCVRYD------ANFTPEYYAGGQ 114
SRC LP+E LS + + SYPWD + +S C+R D G
Sbjct: 47 SRCLLPHENAENVTFHLSQDVLNASYPWDYELRGWSQCMRRDIIGLTNGTIIGTAIGNGT 106
Query: 115 SANNTVPCDRWLFDPEWNTTVSEVLMVFHRRLGDKVPSLYIDLNQTIQYSRSTQEPVLTN 174
C +++D +++ S +T E
Sbjct: 107 EEGGISSCKEYVYD------------------------------RSVYKSTTTSE----- 131
Query: 175 FVMWSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAA 234
W+LVCDKAW R T D+ M+GV+LGS++FG +SD++GR+P F +S++I G L A
Sbjct: 132 ---WNLVCDKAWLRATGDSLFMVGVMLGSMLFGGLSDKYGRRPIFFLSLVIQLAGGILVA 188
Query: 235 FAPDFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGL 294
AP+F ++ RLIVG++TSGVFLVAYV+ALEMVGP KR++A +FF+ G++L AG
Sbjct: 189 VAPEFISYVIFRLIVGSTTSGVFLVAYVIALEMVGPKKRLVASVGCQLFFTTGYILTAGF 248
Query: 295 AYFVHDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILE 354
AYF+ DWR L + +T+P + +L YWWFIPESARWL++KGR +EAK ++Q + EN V +
Sbjct: 249 AYFITDWRMLQVAITVPSIAFLLYWWFIPESARWLLTKGRLQEAKDLLQRASLENGVEMP 308
Query: 355 GFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLS 414
VLD LL + E+ + D KPS+F+LFR+PNL +KS+++FF W V S TYYGLS
Sbjct: 309 SEVLDTLLNNNSED-----SMPDTKKPSLFDLFRYPNLRRKSMLLFFNWLVNSGTYYGLS 363
Query: 415 WNTANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPL 474
W+ +NLGGN Y+NF+ISG+VE+PAY + TL+R+GRK +C C++LSGL L+ + +P
Sbjct: 364 WHASNLGGNDYVNFVISGIVEVPAYTFLIFTLNRWGRKIIICGCMMLSGLALLATLFIPA 423
Query: 475 DLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSV 534
++ + + AM+GK IT +YGA+Y+F+AEQFPTVIRN+G+GA STFAR+GG+ A Y +
Sbjct: 424 NMPWLIVCSAMIGKLAITSSYGAIYVFTAEQFPTVIRNVGLGASSTFARIGGVIAPYVNH 483
Query: 535 LEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVILIDQVFLLQVEIWLP 594
L E+W+P
Sbjct: 484 LS-----------------------------------------------------EVWMP 490
Query: 595 LPFLMFGVLSLTAGILSLILPETHHKKLPESIADGENFG 633
LP ++FG +L G++SL+LPET +KKLPESI DGE FG
Sbjct: 491 LPLVIFGSCALFGGLMSLLLPETLNKKLPESIQDGELFG 529
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 690 | ||||||
| FB|FBgn0019952 | 548 | Orct "Organic cation transport | 0.518 | 0.653 | 0.536 | 5e-132 | |
| FB|FBgn0086365 | 567 | Orct2 "Organic cation transpor | 0.530 | 0.645 | 0.521 | 4.5e-127 | |
| ZFIN|ZDB-GENE-040724-70 | 542 | si:dkey-119m7.4 "si:dkey-119m7 | 0.501 | 0.638 | 0.423 | 3.6e-82 | |
| MGI|MGI:1929481 | 564 | Slc22a21 "solute carrier famil | 0.513 | 0.627 | 0.397 | 8.5e-75 | |
| UNIPROTKB|F1NXX1 | 557 | F1NXX1 "Uncharacterized protei | 0.533 | 0.660 | 0.375 | 8.5e-75 | |
| UNIPROTKB|E2RPT2 | 551 | SLC22A13 "Uncharacterized prot | 0.502 | 0.629 | 0.396 | 5.4e-74 | |
| ZFIN|ZDB-GENE-120215-78 | 537 | si:dkey-166k12.1 "si:dkey-166k | 0.510 | 0.655 | 0.371 | 9.7e-74 | |
| FB|FBgn0038407 | 555 | CG6126 [Drosophila melanogaste | 0.514 | 0.639 | 0.339 | 1.1e-73 | |
| UNIPROTKB|F1NXX3 | 420 | SLC22A4 "Uncharacterized prote | 0.510 | 0.838 | 0.375 | 1.2e-73 | |
| UNIPROTKB|O76082 | 557 | SLC22A5 "Solute carrier family | 0.552 | 0.684 | 0.369 | 1.6e-73 |
| FB|FBgn0019952 Orct "Organic cation transporter" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1052 (375.4 bits), Expect = 5.0e-132, Sum P(3) = 5.0e-132
Identities = 192/358 (53%), Positives = 267/358 (74%)
Query: 178 WSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAP 237
W+LVC ++ TSD+ M+GVLLGSLIFG +SD+ GRKPTF S+++ +FG LAA AP
Sbjct: 120 WNLVCSRSLLSATSDSLFMLGVLLGSLIFGQMSDKLGRKPTFFASLVLQLIFGVLAAVAP 179
Query: 238 DFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYF 297
+++++T R+IVGA+TSGVFLVAYV+ALEMVG S R+ AG + MFFS+GF+L AG AYF
Sbjct: 180 EYFSYTISRMIVGATTSGVFLVAYVIALEMVGSSYRLFAGVAMQMFFSVGFMLTAGFAYF 239
Query: 298 VHDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFV 357
+HDWR L I +TLPGL++L Y+W IPESARWL+ KGR +EA +II+ A+ENKV + +
Sbjct: 240 IHDWRWLQIAITLPGLLFLCYYWIIPESARWLLMKGRKDEAFVIIEKAAKENKVEVPNEI 299
Query: 358 LDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNT 417
+ L+ E++++ + P ++F+L R+PNL +K+++IFF WFV S YYGLSWNT
Sbjct: 300 YEQLVDEVAEKKKQDEMAASQPAATVFDLLRYPNLRRKTLLIFFDWFVNSGVYYGLSWNT 359
Query: 418 ANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLN 477
NLGGN +NF+ISG VEIP Y + TL+R+GR++ LC ++++G+ L+ + +P D+N
Sbjct: 360 NNLGGNQLVNFMISGAVEIPGYTLLLFTLNRWGRRSILCGTMMVAGISLLATIFVPSDMN 419
Query: 478 TVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535
+ + AM+GK IT +YG +YIFSAEQFPTV+RN+G+GA S ARVGGI A Y +L
Sbjct: 420 WLIVACAMIGKLAITSSYGTIYIFSAEQFPTVVRNVGLGASSMVARVGGILAPYLKLL 477
|
|
| FB|FBgn0086365 Orct2 "Organic cation transporter 2" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1036 (369.7 bits), Expect = 4.5e-127, Sum P(3) = 4.5e-127
Identities = 195/374 (52%), Positives = 268/374 (71%)
Query: 178 WSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAP 237
W+LVC + + TSD+ M+GVLLGS++FG +SD++GRKP S++I +FG LA AP
Sbjct: 120 WNLVCGRDFMAATSDSLFMLGVLLGSIVFGQLSDKYGRKPILFASLVIQVLFGVLAGVAP 179
Query: 238 DFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYF 297
+++T+T RL+VGA+TSGVFLVAYV+A+EMVGP KR+ AG + MFFS+GF+L A AYF
Sbjct: 180 EYFTYTFARLMVGATTSGVFLVAYVVAMEMVGPDKRLYAGIFVMMFFSVGFMLTAVFAYF 239
Query: 298 VHDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFV 357
VHDWR L I +TLPGLI++ Y+W IPESARWL+ KGR + A +Q A NKV +
Sbjct: 240 VHDWRWLQIALTLPGLIFMFYYWIIPESARWLLLKGRKDCAIANMQKAARFNKVEISDEA 299
Query: 358 LDGLLAPSPEEEEKLKAQ------NDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYY 411
L LL EEK K + ++GP PS+++LF +PNL +K+++IF W V S YY
Sbjct: 300 LSELLDEGENSEEKAKQKLEDQELDEGPPPSVWDLFCYPNLRRKTLLIFLDWLVTSGVYY 359
Query: 412 GLSWNTANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSAL 471
GLSWNT+NLGGN+ LNF+ISG VEIPAY+ +LTL+R+GR++ LC CL+++GL L+ + +
Sbjct: 360 GLSWNTSNLGGNVLLNFVISGAVEIPAYIFLLLTLNRWGRRSILCGCLVMAGLSLLATVI 419
Query: 472 LPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASY 531
+P ++T+ + AM+GK IT +YG VYIFSAEQFPTV+RN+ +GA S AR+ G+ A +
Sbjct: 420 IPQRMHTLIVACAMLGKLAITASYGTVYIFSAEQFPTVVRNVALGAASMVARISGMMAPF 479
Query: 532 TSVLEAF--PLSYL 543
+ L PL L
Sbjct: 480 LNFLATIWKPLPLL 493
|
|
| ZFIN|ZDB-GENE-040724-70 si:dkey-119m7.4 "si:dkey-119m7.4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 742 (266.3 bits), Expect = 3.6e-82, Sum P(2) = 3.6e-82
Identities = 149/352 (42%), Positives = 223/352 (63%)
Query: 178 WSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAP 237
W LVC+ A + M G+L+G+++FG ++D++GR+ +I + I +FG AAFAP
Sbjct: 121 WDLVCENATMNNIGSSIYMFGLLVGAVLFGALADKYGRRIIILIGLAIQAIFGVGAAFAP 180
Query: 238 DFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYF 297
+F+ + R +VG + S V + A+VL E GP KR++AG + FF G++L+AG+AY
Sbjct: 181 NFYIYVLLRFVVGTTVSAVIMNAFVLGTEWTGPKKRMLAGVITDYFFGFGYILLAGVAYL 240
Query: 298 VHDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFV 357
+ DWR L + ++ P ++L Y W +P+SARWL++ ++EEA +I+ A N LE
Sbjct: 241 IRDWRKLQLAISAPSFLFLFYVWVLPKSARWLMANNKHEEALDLIRKAALINGKPLEDDD 300
Query: 358 LDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNT 417
++ L SP+ EKL+ Q K ++ +L R P + K+S+I+F+LWFV L YYGLS N
Sbjct: 301 ME--LYQSPKSSEKLQEQR---KYTVLDLVRTPRMRKQSLILFYLWFVNVLVYYGLSLNI 355
Query: 418 ANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLN 477
++ G NIYL +I G+VE+PA ++ TL+R R + L L + GL +++ +P DL+
Sbjct: 356 SDFGMNIYLTQMIFGLVEMPARTITLFTLNRSRRISQLA-FLAVGGLACLLTIFIPDDLS 414
Query: 478 TVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFA 529
V VLAM+GKF IT + VYI+SAE FPTVIR GIG GS AR GG+ A
Sbjct: 415 VVRTVLAMVGKFGITASLSIVYIYSAEVFPTVIRQNGIGMGSMCARAGGVIA 466
|
|
| MGI|MGI:1929481 Slc22a21 "solute carrier family 22 (organic cation transporter), member 21" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 703 (252.5 bits), Expect = 8.5e-75, Sum P(2) = 8.5e-75
Identities = 145/365 (39%), Positives = 218/365 (59%)
Query: 178 WSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAP 237
W LVC W + +F +GVLLGS I G +SDRFGRK +++ + F + F+
Sbjct: 132 WDLVCKDDWKAPLTTSFFYVGVLLGSFISGQLSDRFGRKNILFLTMAMHTGFSFIQVFSV 191
Query: 238 DFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTV-IHMFFSIGFLLIAGLAY 296
+F FT +VG ++ A+VL EM+ S RII T+ + +FF+ GF+++ AY
Sbjct: 192 NFEMFTLLYTLVGMGHISNYVAAFVLGTEMLSKSVRIIFATLGVCIFFAFGFMVLPLFAY 251
Query: 297 FVHDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGF 356
F+ +WR L + +TLPG++ A WWFIPES RWLIS+GR +EA++II+ A+ N ++
Sbjct: 252 FIREWRRLLLAITLPGVLCGALWWFIPESPRWLISQGRIKEAEVIIRKAAKINGIVAPST 311
Query: 357 VLDGLLAPSPEEEEKLKAQNDGPKPS---IFELFRHPNLFKKSVIIFFLWFVCSLTYYGL 413
+ D P E KL+ + KP I++L R PN+ +++ LW S+ Y+GL
Sbjct: 312 IFD------PSETNKLQ-DDSSKKPQSHHIYDLVRTPNIRILTIMSIILWLTISVGYFGL 364
Query: 414 SWNTANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLP 473
S +T NL GNIY+N + VE+PAY+ + L L R+ + L L G L++ L+P
Sbjct: 365 SLDTPNLNGNIYVNCFLLAAVEVPAYVLAWLLLQHVSRRYSMAGSLFLGGSVLLLVQLVP 424
Query: 474 LDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTS 533
DL+ +S L M+GKF IT AY VY+++AE +PTV+RN+G+G ST +R+G I + Y
Sbjct: 425 SDLHYLSTTLVMVGKFGITSAYSMVYVYTAELYPTVVRNMGVGVSSTASRLGSILSPYFV 484
Query: 534 VLEAF 538
L A+
Sbjct: 485 YLGAY 489
|
|
| UNIPROTKB|F1NXX1 F1NXX1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 693 (249.0 bits), Expect = 8.5e-75, Sum P(2) = 8.5e-75
Identities = 142/378 (37%), Positives = 223/378 (58%)
Query: 162 QYSRSTQEPVLTNFVMWSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMI 221
+YSR + W+LVCD W S + +GVLLGS I G +SD+FGRK
Sbjct: 118 EYSRDVYRSTIVT--EWNLVCDNDWKGPMSTSLFFVGVLLGSFISGQLSDKFGRKNVLFS 175
Query: 222 SILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTV-I 280
++ + +F + F+ + F+ L+VG ++ A+VL E++G S R++ T+ +
Sbjct: 176 TLAMQTIFSFIQIFSTSWEMFSVFFLLVGMGQISNYVAAFVLGTEILGKSIRLLFCTLGV 235
Query: 281 HMFFSIGFLLIAGLAYFVHDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKL 340
+F++ G++L+ AYF+ DWR L + +TLPGL+ + WW IPES RWLIS+GR +EA+
Sbjct: 236 CIFYAFGYMLLPLFAYFIRDWRMLLLALTLPGLLCIPLWWIIPESPRWLISQGRFQEAED 295
Query: 341 IIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIF 400
II+ A+ NKV + D P E + L +Q +I +L R N+ +++
Sbjct: 296 IIRKAAKINKVTAPDVIFD------PSELQDLSSQRQQTY-TILDLMRTRNILTITIMSV 348
Query: 401 FLWFVCSLTYYGLSWNTANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLI 460
LW + S+ Y+GLS +T NL G++YLN +S ++E+PAY+ S L L R+ + L
Sbjct: 349 ILWMIISVGYFGLSLDTPNLHGDVYLNCFLSAVIEVPAYIISWLLLRNLPRRYSMAAALF 408
Query: 461 LSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGST 520
L G L+ L+P L +SI+L M+GKF IT A+ VY+++AE +PTV+RN+G+GA S
Sbjct: 409 LGGCVLLFIQLVPSHLRALSILLVMLGKFGITSAFSMVYVYTAELYPTVVRNMGVGASSM 468
Query: 521 FARVGGIFASYTSVLEAF 538
+R+G I + Y + L A+
Sbjct: 469 ASRLGSILSPYFAYLGAY 486
|
|
| UNIPROTKB|E2RPT2 SLC22A13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 657 (236.3 bits), Expect = 5.4e-74, Sum P(3) = 5.4e-74
Identities = 142/358 (39%), Positives = 201/358 (56%)
Query: 178 WSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAP 237
++LVCD+ + TS + M G+L GSLIFG + D GR+ T ++ + + +FG AF P
Sbjct: 127 FNLVCDRKHLKETSQSVYMAGLLAGSLIFGPLCDWIGRRATILVQLFLFAIFGLSTAFVP 186
Query: 238 DFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYF 297
F + R V + +G L E VGP R A + FS+G + +AGLAY
Sbjct: 187 SFELYMVLRFAVATAVAGYTFSNVTLLTEWVGPLWRTRAVVLAQCAFSVGEMALAGLAYG 246
Query: 298 VHDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFV 357
+ +WRH + T P L+ Y+W +PESARWL+++GR EEA+ +IQ VA NK L
Sbjct: 247 IRNWRHFQMAGTAPVLLLFFYFWALPESARWLLTQGRVEEARQVIQKVASVNKRKL---- 302
Query: 358 LDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNT 417
SPE +L A+ GP + +LFRHP L+K ++I+ ++WFV SL YYGLS
Sbjct: 303 -------SPELLSQLVAEKTGPSGNALDLFRHPQLWKMTLILCYVWFVDSLGYYGLSLQV 355
Query: 418 ANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLN 477
+ G +IYL +I G VE+PA SS+ + GRK L+L GL I +P DL
Sbjct: 356 GDFGLDIYLTQLIFGAVEVPARYSSIFMMQWLGRKWSQMLSLVLGGLMCIAIIFVPADLP 415
Query: 478 TVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535
V VLA++GKF + Y++SAE FPT+IR G+G F+R+GGI +L
Sbjct: 416 VVVTVLAVVGKFATASGFTISYVYSAELFPTIIRQTGMGLMGIFSRIGGILTPLVILL 473
|
|
| ZFIN|ZDB-GENE-120215-78 si:dkey-166k12.1 "si:dkey-166k12.1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 681 (244.8 bits), Expect = 9.7e-74, Sum P(2) = 9.7e-74
Identities = 135/363 (37%), Positives = 214/363 (58%)
Query: 173 TNFVMWSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTL 232
T W LVCDK + M+G+L+G+++FG ++DR+GR+ ++S+ + VFG
Sbjct: 110 TTVTEWDLVCDKRGLSSLGSSIYMLGLLVGAVVFGAMADRYGRRFAMLVSLALQTVFGVA 169
Query: 233 AAFAPDFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIA 292
AAFAP+F + R I+G + SGV + A+VL E +R++AG FF G++L+A
Sbjct: 170 AAFAPNFPVYVGLRFIIGMTVSGVIINAFVLGTEWTCTQRRMLAGIFTDYFFGFGYMLLA 229
Query: 293 GLAYFVHDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVI 352
G+A+ + DWR L + ++ PG +++ Y W +P SARWL+ R EEA +++ A N
Sbjct: 230 GVAFLIRDWRKLQLAISAPGFLFIFYIWVLPHSARWLLVNNRKEEAIDLLRKAASVN--- 286
Query: 353 LEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYG 412
G P + E+ ++ K ++ +L R P + K+++I+F++WFV L YYG
Sbjct: 287 -------GRTLPPTVQVERYESPQGRSKYTVVDLLRTPQMRKRALILFYIWFVNVLVYYG 339
Query: 413 LSWNTANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALL 472
LS ++LG ++YL + G+VEIPA + +L L RK L L++ G +++ L
Sbjct: 340 LSLGVSDLGADLYLTQFMFGLVEIPAR-TLVLVLLPCSRKIPLSVFLVVGGGACLLTLTL 398
Query: 473 PLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYT 532
P D V LAM+GKF IT ++ +Y++SAE FPTV+R GIG S FAR+GG+ A
Sbjct: 399 PADSAHVRTALAMVGKFGITASFAIIYVYSAELFPTVLRQTGIGVSSMFARMGGVLAPLI 458
Query: 533 SVL 535
++L
Sbjct: 459 NLL 461
|
|
| FB|FBgn0038407 CG6126 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 610 (219.8 bits), Expect = 1.1e-73, Sum P(3) = 1.1e-73
Identities = 123/362 (33%), Positives = 199/362 (54%)
Query: 178 WSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAP 237
W+ VCD+ W M+GV G++ G ++D+ GRK F S L + G AF P
Sbjct: 122 WNFVCDRRWMGAIVQTVFMLGVFTGAVTLGGLADKVGRKTVFCWSALFQLIIGVGVAFIP 181
Query: 238 DFWTFTACRLIVG-ASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAY 296
++++F R ++G ++G ++ +VL +E+VGP+KR + G F+ G +L+AG
Sbjct: 182 EYFSFMVARYLLGIVGSAGAYICGFVLTMELVGPTKRTVCGITFQAVFAGGIMLVAGWGA 241
Query: 297 FVHDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGF 356
+ D + L ++ L G ++L +WW++ ES RWL +GR EA + VA+ ++ G
Sbjct: 242 LIPDRQWLQVIYGLHGCLFLGHWWWLDESPRWLWMQGRAAEA---VDIVAKGLRINGSGI 298
Query: 357 VLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWN 416
+D +++ A + + +LFR PNL K++ + WF SL YYGLS +
Sbjct: 299 PVDKEYYVQKAKQQA--AAEEKSSAGLSDLFRTPNLRMKTLNVCLCWFANSLVYYGLSLS 356
Query: 417 TANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDL 476
L GN YL I G+VE P+Y++ + LDR GR++ ++ GLC IV+A +
Sbjct: 357 AGKLYGNPYLILFIMGLVEFPSYITIVFVLDRLGRRSITSTLMLGGGLCCIVAAYIAQG- 415
Query: 477 NTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLE 536
+T S + M GK I G++ +Y +SAE FPTV+RN +G GS AR+ G ++L+
Sbjct: 416 STTSTAVVMAGKLLIAGSFAVIYNYSAELFPTVVRNSAMGLGSMCARLSGALTPLITLLD 475
Query: 537 AF 538
+F
Sbjct: 476 SF 477
|
|
| UNIPROTKB|F1NXX3 SLC22A4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 682 (245.1 bits), Expect = 1.2e-73, Sum P(2) = 1.2e-73
Identities = 136/362 (37%), Positives = 218/362 (60%)
Query: 178 WSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAP 237
W+LVC+ W + + +GVL+GS I G +SDRFGRK +++ + F L F+
Sbjct: 1 WNLVCEDDWKVPLTTSLFFVGVLIGSFISGQLSDRFGRKSILFLTMAVQTGFSFLQIFST 60
Query: 238 DFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTV-IHMFFSIGFLLIAGLAY 296
+ FT LIVG ++VA++L E++G S RI+ T+ + +FF+IG++L+ AY
Sbjct: 61 SWEMFTVLFLIVGMGQISNYVVAFILGTEILGKSVRILFSTLGVCVFFAIGYMLLPLFAY 120
Query: 297 FVHDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGF 356
F+ DWR L + +TLPGL+ + WW IPES RWLIS+GR +EA++II+ A+ N
Sbjct: 121 FIRDWRMLLLALTLPGLLCVPLWWIIPESPRWLISQGRYKEAEVIIRKAAKINNTPAPAM 180
Query: 357 VLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWN 416
+ D P++++K + +LFR N+ +++ LWF S+ Y+GLS N
Sbjct: 181 LFDAAEDSKPQQQQKA---------ILLDLFRSRNIATITIMSLLLWFFTSVGYFGLSLN 231
Query: 417 TANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDL 476
T NL G+ Y+N +S ++E+PAY+ + L L R+ + L+L G ++ L+P DL
Sbjct: 232 TPNLHGDAYINCFLSAVIEVPAYIIAWLLLRSLPRRYSISGTLVLGGGVVLFINLVPTDL 291
Query: 477 NTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLE 536
+ +S+ L M+GKF IT A+ +Y+++ E +PT++RN+ +GA ST +R+G I A Y L
Sbjct: 292 SVLSVCLVMLGKFGITAAFSMLYVYNVELYPTLVRNMAVGATSTASRLGSIIAPYFVYLG 351
Query: 537 AF 538
A+
Sbjct: 352 AY 353
|
|
| UNIPROTKB|O76082 SLC22A5 "Solute carrier family 22 member 5" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 690 (248.0 bits), Expect = 1.6e-73, Sum P(2) = 1.6e-73
Identities = 146/395 (36%), Positives = 233/395 (58%)
Query: 151 PSLYIDLNQTIQYS-----RSTQEPVLTNFVM-WSLVCDKAWYRGTSDAFLMMGVLLGSL 204
P +DL Q Q S +Q+ L+ V W+LVC+ W + + +GVLLGS
Sbjct: 99 PGRDVDLGQLEQESCLDGWEFSQDVYLSTIVTEWNLVCEDDWKAPLTISLFFVGVLLGSF 158
Query: 205 IFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264
I G +SDRFGRK +++ + F L F+ +F F ++VG ++ A+VL
Sbjct: 159 ISGQLSDRFGRKNVLFVTMGMQTGFSFLQIFSKNFEMFVVLFVLVGMGQISNYVAAFVLG 218
Query: 265 LEMVGPSKRIIAGTV-IHMFFSIGFLLIAGLAYFVHDWRHLDILVTLPGLIYLAYWWFIP 323
E++G S RII T+ + +F++ G++++ AYF+ DWR L + +T+PG++ +A WWFIP
Sbjct: 219 TEILGKSVRIIFSTLGVCIFYAFGYMVLPLFAYFIRDWRMLLVALTMPGVLCVALWWFIP 278
Query: 324 ESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSI 383
ES RWLIS+GR EEA++II+ A+ N +++ + D P E + L ++ +I
Sbjct: 279 ESPRWLISQGRFEEAEVIIRKAAKANGIVVPSTIFD------PSELQDLSSKKQ-QSHNI 331
Query: 384 FELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNTANLGGNIYLNFIISGMVEIPAYLSSM 443
+L R N+ +++ LW S+ Y+GLS +T NL G+I++N +S MVE+PAY+ +
Sbjct: 332 LDLLRTWNIRMVTIMSIMLWMTISVGYFGLSLDTPNLHGDIFVNCFLSAMVEVPAYVLAW 391
Query: 444 LTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSA 503
L L R+ + L L G L+ L+P DL ++ VL M+GKF +T A+ VY+++A
Sbjct: 392 LLLQYLPRRYSMATALFLGGSVLLFMQLVPPDLYYLATVLVMVGKFGVTAAFSMVYVYTA 451
Query: 504 EQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAF 538
E +PTV+RN+G+G ST +R+G I + Y L A+
Sbjct: 452 ELYPTVVRNMGVGVSSTASRLGSILSPYFVYLGAY 486
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9VCA2 | ORCT_DROME | No assigned EC number | 0.4333 | 0.7072 | 0.8905 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.7 | 0.691 |
| 4th Layer | 2.7.7.27 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 690 | |||
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 1e-122 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 8e-29 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 1e-25 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 2e-19 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 7e-17 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 1e-16 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 4e-16 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 3e-15 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 6e-12 | |
| COG2814 | 394 | COG2814, AraJ, Arabinose efflux permease [Carbohyd | 2e-11 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 2e-11 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 3e-11 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 2e-10 | |
| TIGR00893 | 399 | TIGR00893, 2A0114, D-galactonate transporter | 5e-09 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 4e-08 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 4e-08 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 7e-08 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 5e-07 | |
| PRK09952 | 438 | PRK09952, PRK09952, shikimate transporter; Provisi | 2e-06 | |
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 2e-04 | |
| PRK15403 | 413 | PRK15403, PRK15403, multidrug efflux system protei | 2e-04 | |
| TIGR00710 | 385 | TIGR00710, efflux_Bcr_CflA, drug resistance transp | 4e-04 | |
| TIGR00900 | 365 | TIGR00900, 2A0121, H+ Antiporter protein | 0.004 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 374 bits (962), Expect = e-122
Identities = 179/462 (38%), Positives = 259/462 (56%), Gaps = 63/462 (13%)
Query: 163 YSRSTQEPVLTNFVMWSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMIS 222
YS T + W LVC+ AW + + +GVLLGS +FG +SDRFGRK ++S
Sbjct: 106 YSYDTFSSTIV--TEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLS 163
Query: 223 ILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHM 282
L+ V G L AF+P++ F RL+VG G+++ A VL E + +R I GT+I +
Sbjct: 164 TLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQV 223
Query: 283 FFSIGFLLIAGLAYFVHDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLII 342
FFS+G +L+ +AYF+ DWR L + V+LP ++ WF+PES RWLIS+GR EEA I+
Sbjct: 224 FFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKIL 283
Query: 343 QAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFL 402
Q +A+ N L +L+ S E++ + + S +LFR PNL K ++ + L
Sbjct: 284 QRIAKINGKKL----PAEVLSLSLEKDLSSSKK----QYSFLDLFRTPNLRKTTLCLMML 335
Query: 403 WFVCSLTYYGLSWNTANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILS 462
WF + +YYGL + NLGGNIYL+ ISG+VE+PA L ++L +DR GR+ + L+L+
Sbjct: 336 WFTTAFSYYGLVLDLGNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLA 395
Query: 463 GLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFA 522
G+ L++ +P+DL + LA++GKF IT A+ VY+++AE +PTV+RN+G+G ST A
Sbjct: 396 GVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMA 455
Query: 523 RVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVILID 582
RVG I + + L YLG
Sbjct: 456 RVGSIISPF--------LVYLG-------------------------------------- 469
Query: 583 QVFLLQVEIWLPLPFLMFGVLSLTAGILSLILPETHHKKLPE 624
E WL LP ++FG L+L AGIL+L LPET LPE
Sbjct: 470 -------EKWLFLPLVLFGGLALLAGILTLFLPETKGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 8e-29
Identities = 87/375 (23%), Positives = 156/375 (41%), Gaps = 38/375 (10%)
Query: 193 AFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPD--FWTFTACRLIVG 250
+ +G L+GSL G + DRFGRK + +I ++ + L FA F+ R+IVG
Sbjct: 53 SIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVG 112
Query: 251 ASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHD------WRHL 304
G+ ++ + E+ R G++ + + G L+ A + ++ WR
Sbjct: 113 LGVGGISVLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIP 172
Query: 305 DILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAP 364
L +P ++ L F+PES RWL+ KG+ EEA+ ++ + + V E
Sbjct: 173 LGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQ-------- 224
Query: 365 SPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLT------YYGLS-WNT 417
EE++ L+ + K S ELFR + ++ ++ L LT YY + + T
Sbjct: 225 --EEKDSLERSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFET 282
Query: 418 ANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLI-LSGLCLIVSALLPL-- 474
L ++ + I+ G+V ++ +DR+GR+ L ++ L++ L
Sbjct: 283 LGLSDSLLVTIIV-GVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVA 341
Query: 475 ---DLNTVSIVLAM-MGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFAS 530
V+IV + FF G ++ +E FP +R A A+
Sbjct: 342 KSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVR----PKAMAIATAANWLAN 397
Query: 531 Y-TSVLEAFPLSYLG 544
+ L +G
Sbjct: 398 FLIGFLFPIITGAIG 412
|
Length = 449 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-25
Identities = 83/343 (24%), Positives = 140/343 (40%), Gaps = 27/343 (7%)
Query: 198 GVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVF 257
G+ G+L FG ++DR GR+ + SIL+ VF L A A + R + G G+
Sbjct: 64 GMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLM 123
Query: 258 LVAYVLALEMVGPSKRIIAGTVIHMFFSIGFL---LIAGLAYFVHDWRHLDILVTL-PGL 313
L E R A ++ + IG +AG V WR L + + P L
Sbjct: 124 PNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLL 183
Query: 314 IYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLK 373
+ L F+PES +L+SK R E + I+ A+A + A + + K
Sbjct: 184 LLLLLMRFLPESIDFLVSK-RPETVRRIVNAIA------------PQMQAEAQSALPEQK 230
Query: 374 AQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGL-SWN---TANLGGNIYLNFI 429
A + LF+ + +V+++ L+F+ + Y L +W LG ++ L
Sbjct: 231 ATQGTKRSVFKALFQ-GKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAAT 289
Query: 430 ISGMVEIPAYLSSMLT---LDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMM 486
+ + S++ DR G + L+L + ++ + ++ A+
Sbjct: 290 GGALFNFGGVIGSIIFGWLADRLGPRVTAL-LLLLGAVFAVLVGSTLFSPTLLLLLGAIA 348
Query: 487 GKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFA 529
G FF+ G +Y A +PT IR G+G R+G I
Sbjct: 349 G-FFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIG 390
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 2e-19
Identities = 87/348 (25%), Positives = 141/348 (40%), Gaps = 29/348 (8%)
Query: 193 AFLMMGVLLGSLIFGDISDRFGRKPTFMISIL---IMDVFGTLAAFAPDFWTFTACRLIV 249
+ ++G +G+L G +SDRFGRK + +I L I + LAAFA R+++
Sbjct: 78 SIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLL 137
Query: 250 GASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHD------WRH 303
G + + E+ + R ++ + + G L+ G WR
Sbjct: 138 GIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRI 197
Query: 304 LDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLA 363
L +P + +F+PES RWL+ KGR EEA+ + + + E +LD L
Sbjct: 198 PLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKE--LLDELEL 255
Query: 364 PSPEEE-EKLKAQNDGPKPSIFELFRHPN--LFKKSVIIFFLWFVC--SLTYYGLSW--N 416
+ EK Q S+F R LF V+ +F F ++ YY + N
Sbjct: 256 IDIKRSIEKRSVQPSW--GSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN 313
Query: 417 TANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALL---- 472
+ +L II G V ++ +DR+GR+ L +CL V +L
Sbjct: 314 AGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASF 373
Query: 473 ----PLDLNTVSIVLAMM-GKFFITGAYGAVYIFSAEQFPTVIRNIGI 515
V+IV ++ FF G ++ +E FP +R GI
Sbjct: 374 VTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGI 421
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 7e-17
Identities = 89/368 (24%), Positives = 133/368 (36%), Gaps = 64/368 (17%)
Query: 193 AFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDV----------FGTLAAFAPDFWTF 242
FL LG+++FG DR GRK T +I++L+M + + T+ +AP
Sbjct: 44 GFLAR--PLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPIL--L 99
Query: 243 TACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHDWR 302
RLI G S G + A + E P KR G+ + +G LL A +
Sbjct: 100 LLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLS--- 156
Query: 303 HLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLL 362
L L + W IP ++ AV ++L G L L
Sbjct: 157 -----YLLGDDALLEWGWRIP----------------FLVSAV-----LVLIGLYLRRNL 190
Query: 363 APSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYY-------GLSW 415
+P E+ + P I E K ++ L + T+Y
Sbjct: 191 EETPVFEKAQEKHKKKRGP-IAETLTKH--RKPFLLGLGLVIATTTTFYLITTYLPTYLT 247
Query: 416 NTANLGGNIYLNFI----ISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLC--LIVS 469
T L N L + I + IP LS L+ DR GR+ L +L+ L ++
Sbjct: 248 QTLGLSANSALLVLMLSLILFFITIP--LSGALS-DRIGRRPVLIIFTVLAALLAVPLLM 304
Query: 470 ALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFA 529
ALL T+ L + G + F E FPT +R GA + G IF
Sbjct: 305 ALLDSGSFTLFFFLVLGMALIGGMYTGPMGSFLPELFPTEVR--YTGASLAYNLAGAIFG 362
Query: 530 SYTSVLEA 537
+ + A
Sbjct: 363 GFAPYIAA 370
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 1e-16
Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 6/158 (3%)
Query: 172 LTNFVMWSLVCDKAWYR---GTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDV 228
L + + L D G + +G LGSL+ G +SDRFGR+ ++ +L+ +
Sbjct: 17 LLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFAL 76
Query: 229 FGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGF 288
L AFA W R ++G ++ A L E P +R A + F +G
Sbjct: 77 GSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGA 136
Query: 289 LLIAGLAYFV---HDWRHLDILVTLPGLIYLAYWWFIP 323
LL L + WR L +++ + GL+ F+
Sbjct: 137 LLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL 174
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 4e-16
Identities = 65/347 (18%), Positives = 118/347 (34%), Gaps = 54/347 (15%)
Query: 196 MMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSG 255
+G L + G +SDRFGR+ +I +L+ + L FA W R++ G
Sbjct: 42 SLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLRVLQGLGGGA 101
Query: 256 VFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLL---IAGLAYFVHDWRHLDILVTLPG 312
+F A L + P +R A ++ F +G L + GL + WR +++ +
Sbjct: 102 LFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAILA 161
Query: 313 LIY--LAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEE 370
L+ LA P +
Sbjct: 162 LLAAVLAALLLPRP---------------------------------------PPESKRP 182
Query: 371 KLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNTANLGGNIYLNFII 430
K + P ++L + + + F L LG + L ++
Sbjct: 183 KPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLAGLL 242
Query: 431 SGMVEIPAYLSSMLT---LDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMG 487
G+ + + +L DR GR+ L L+L L + ALL L +++ +++A+
Sbjct: 243 LGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVAL-- 300
Query: 488 KFFITGAYGAVYI----FSAEQFPTVIRNIGIGAGSTFARVGGIFAS 530
+ G V+ ++ P R G +T +GG
Sbjct: 301 -LLLGFGAGLVFPALNALVSDLAPKEERGTASGLYNTAGSLGGALGP 346
|
Length = 346 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 79.3 bits (195), Expect = 3e-15
Identities = 58/259 (22%), Positives = 111/259 (42%), Gaps = 47/259 (18%)
Query: 197 MGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGV 256
+G+++G+ +G ++D+ GRK +I + + F ++F + F CRL+ G G
Sbjct: 213 LGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGA 272
Query: 257 FLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIA----------------GLAYFVHD 300
+ + E + KR + + MF+ IG + A G AY H
Sbjct: 273 IPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHS 332
Query: 301 WRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEEN--------KVI 352
WR I+ P + + F+PES R+ + G+++EA +I++ + + N KV
Sbjct: 333 WRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKV- 391
Query: 353 LEGFVLDGLLAPSPEEEEKLKAQND-----------------GPKPSIFELFRHPNLFKK 395
F ++ + +E+E ++ ++D G + F + +
Sbjct: 392 ---FSVNHIKTIH-QEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPE-VREI 446
Query: 396 SVIIFFLWFVCSLTYYGLS 414
++ + +WF S YYGLS
Sbjct: 447 TIKLMGVWFTLSFGYYGLS 465
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 6e-12
Identities = 82/394 (20%), Positives = 140/394 (35%), Gaps = 77/394 (19%)
Query: 198 GVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFA-----PDFWTFTAC--RLIVG 250
G L G L FG ++D+ GRK + + ++IM + T+A+ P T C R +G
Sbjct: 68 GTLAGQLFFGWLADKLGRKRVYGMELIIM-IIATVASGLSPGSSPKSVMATLCFWRFWLG 126
Query: 251 ASTSGVF------------------LVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIA 292
G + ++A V A++ G I+AG ++ + GF
Sbjct: 127 VGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFG----ILAGAIVALIVLAGFKHSL 182
Query: 293 GLAYFVHD------------WRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKL 340
A WR L +P L+ L + IPE+ R+ ++ E
Sbjct: 183 EAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVE--- 239
Query: 341 IIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIF 400
QA ++ + VL + P+E EK + PK S + F H ++ +
Sbjct: 240 --QAASDMSA------VLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLL 291
Query: 401 ---FLWFVCSLTYYGLS-----------WNTANLGGNIYL--------NFIISGMVEIPA 438
WF+ + +YG++ ++ N Y N II+ +P
Sbjct: 292 GTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPG 351
Query: 439 YLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALL--PLDLNTVSIVLAMMGKFFITGAYG 496
Y ++ +D GRK + + V L + + + F G
Sbjct: 352 YWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNA 411
Query: 497 AVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFAS 530
+I E FPT R+ G + + G I
Sbjct: 412 TTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQ 445
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 2e-11
Identities = 32/134 (23%), Positives = 57/134 (42%), Gaps = 4/134 (2%)
Query: 198 GVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVF 257
GV LG+ + ++ R R+ + + + V L+A AP F R + G + +
Sbjct: 60 GVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFW 119
Query: 258 LVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHD---WRHLDILVTLPGLI 314
+A LA +V P KR A ++ ++ +L L F+ WR + + + L+
Sbjct: 120 SIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALL 179
Query: 315 YLAY-WWFIPESAR 327
L W +P S
Sbjct: 180 ALLLLWKLLPPSEI 193
|
Length = 394 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (162), Expect = 2e-11
Identities = 83/348 (23%), Positives = 130/348 (37%), Gaps = 59/348 (16%)
Query: 201 LGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVA 260
G +FG ++D+FGRKP M SI+ V L+ A T R IVG +G + A
Sbjct: 68 FGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACA 127
Query: 261 YVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYF------VHDWRHLDILVTLPGLI 314
A+E + A + F IG ++ AYF + WR + LP L+
Sbjct: 128 STYAVESWPKHLKSKASAFLVSGFGIGNIIA---AYFMPSFAEAYGWRAAFFVGLLPVLL 184
Query: 315 YLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKA 374
+ PES W EEAKL + ++ F L
Sbjct: 185 VIYIRARAPESKEW-------EEAKL--SGKGKHSQSAWSVFSL---------------- 219
Query: 375 QNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNT-----ANLGGNIYLNFI 429
S+ LF F ++ +F + F + +G +W L G + +
Sbjct: 220 -------SMKGLFNRAQ-FPLTLCVFIVLF----SIFGANWPIFGLLPTYLAGEGFDTGV 267
Query: 430 ISGMVEIPAYLSSMLTL------DRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVL 483
+S ++ A+ + + + DR G K L++S L + +P D N + +
Sbjct: 268 VSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQD-NYLLLGA 326
Query: 484 AMMGKFFIT-GAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFAS 530
+ G G G V F + FP +R +G G A G F S
Sbjct: 327 CLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNS 374
|
Length = 426 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 3e-11
Identities = 78/371 (21%), Positives = 134/371 (36%), Gaps = 30/371 (8%)
Query: 183 DKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTF 242
D A S A + G+L+FG DR+GR+ + SI++ FAP + T
Sbjct: 48 DAAS--LISAALISRWF--GALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITM 103
Query: 243 TACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---- 298
RL++G G + + +E R A ++ +++G ++ A + V
Sbjct: 104 FIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVW 163
Query: 299 -HDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFV 357
WR L + LP + L IPE+ W + K +A+ IL G
Sbjct: 164 GDGWRALFFISILPIIFALWLRKNIPEAEDW--------KEKHAGKALVRTMVDILYGG- 214
Query: 358 LDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNT 417
+ +A Q+ G + F ++ +++F + + ++
Sbjct: 215 -EHRIANIVMTLAAAMVQSAGKRWPTF-------VYLVVLVLFANLYSHPIQDLLPTYLK 266
Query: 418 ANLGGNIYLNFIISGMVEIPAYLSSML---TLDRYGRKNFLCPCLILSGLCLIVSALLPL 474
A+LG + + I I A + + D GR+ L+ LI+
Sbjct: 267 ADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQ-LLIIPVFAIG 325
Query: 475 DLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSV 534
V + + + G +G + E FPT R G+G +GG A
Sbjct: 326 ANVAVLGLGLFFQQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGA 385
Query: 535 LEAFPLSYLGT 545
L A L GT
Sbjct: 386 LLAQRLDEYGT 396
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 2e-10
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 9/134 (6%)
Query: 201 LGSLIFGDISDRFGRKPTFMISILIMDVFGTLA-AFAPDFWTFTACRLIVGASTSGVFLV 259
G L+ G + DR+GR+ +ISI++ GTLA FAP +WT RL++G +G +
Sbjct: 70 FGGLLLGAMGDRYGRRLAMVISIVLFS-VGTLACGFAPGYWTLFIARLVIGMGMAGEYGS 128
Query: 260 AYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGL-AYFV--HDWRHLDILVTLPGLIYL 316
+ +E R A + FSIG ++ A + + V WR L + LP I
Sbjct: 129 SATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILP--IIF 186
Query: 317 AYWW--FIPESARW 328
A W +PE+ W
Sbjct: 187 ALWLRKNLPEAEDW 200
|
Length = 496 |
| >gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 5e-09
Identities = 69/355 (19%), Positives = 132/355 (37%), Gaps = 55/355 (15%)
Query: 198 GVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVF 257
G ++G G + DRFG + T + I+I VF L AFA + + R+++GA+ + F
Sbjct: 41 GYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFF 100
Query: 258 LVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDILVTLPGLI 314
++ S+R A ++ + +G ++ L ++ W+ I+ + G+I
Sbjct: 101 PGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGII 160
Query: 315 YLAYWWFI----PESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEE 370
+ W P+ A+WL EE K I V+ GLLA E+
Sbjct: 161 WGVLWLKFIPDPPQKAKWL----------------TEEEKYI----VVGGLLA-----EQ 195
Query: 371 KLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWF-VCSLTYYGLSWNTANLGGNIYLNFI 429
+ K + K I EL + ++ + F V + L+W L L+ +
Sbjct: 196 QGKGPSTPKKYQIKELLKDRRVW----GLALGQFLVNIGLGFFLTWFPTYLVQERGLSIL 251
Query: 430 ISGMVEIPAYL-----------SSMLTLDRY----GRKNFLCPCLILSGLCLIVSALLPL 474
+G + + S L L R + ++ L + + + +
Sbjct: 252 EAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNI 311
Query: 475 DLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFA 529
+++V A+ ++ P I + G ++ +GGI
Sbjct: 312 PYAALALVALGFFGLGAGAIGWAL---ISDNAPGNIAGLTGGLINSLGNLGGIVG 363
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 399 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 4e-08
Identities = 43/164 (26%), Positives = 78/164 (47%), Gaps = 18/164 (10%)
Query: 196 MMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSG 255
++G+L G+L+ G ++DR GRK ++S+ + +F A A DF + RL+ G G
Sbjct: 60 ILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGG 119
Query: 256 VF--LVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDI---- 306
L+A L E VGP R A ++++ G L + + WRH+
Sbjct: 120 ALPNLIA--LTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGV 177
Query: 307 --LVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEE 348
L+ +P L+ ++PES + + G ++ +++A+ E
Sbjct: 178 GPLLLVPLLM-----RWLPESRAFAQAAGAGKQRAPVLRALFGE 216
|
Length = 406 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 4e-08
Identities = 76/360 (21%), Positives = 152/360 (42%), Gaps = 70/360 (19%)
Query: 196 MMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDF-------------WTF 242
++G ++G + G S+RFGR+ + I+ ++ + L + P+F F
Sbjct: 65 LIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISA-LGSAWPEFGFTSIGPDNTGYVPEF 123
Query: 243 TACRLIVGASTSGVFLVAYVLALEM--VGPSKR-----------IIAGTVIHMFFSIGFL 289
R+I G GV L + + + + + P+ II G ++ F +
Sbjct: 124 VIYRIIGGI---GVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIA 180
Query: 290 LIAGLAYFVHD-WRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEE 348
++ D WR++ +P L++L +F+PE+ R+L+S+G+ E+A+ I++ +
Sbjct: 181 RSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGN 240
Query: 349 NKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIF------FL 402
+ + +++K D + + +L +F VI+ F
Sbjct: 241 TL--------------ATQALQEIKHSLDHGRKTGGKLL----MFGVGVIVIGVMLSVFQ 282
Query: 403 WFV---CSLTYYGLSWNTANLGGNI-YLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPC 458
FV L Y + T +I L II G++ + + +++T+D++GRK P
Sbjct: 283 QFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRK----PL 338
Query: 459 LILSGLCLIVSA--LLPLDLNTVSIVLAMMGKFFITGAY----GAV-YIFSAEQFPTVIR 511
I+ L + + L ++A++ F A+ G V ++ +E FP IR
Sbjct: 339 QIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIR 398
|
Length = 479 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 7e-08
Identities = 27/132 (20%), Positives = 56/132 (42%), Gaps = 4/132 (3%)
Query: 198 GVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVF 257
G L+ S + G ++DRFGRKP ++ + I + + A + + R + G +
Sbjct: 10 GQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFAL 69
Query: 258 LVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHDWRH----LDILVTLPGL 313
+ L ++ P +R +A ++ ++G LL L + + L L
Sbjct: 70 VAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALA 129
Query: 314 IYLAYWWFIPES 325
++ + +PE+
Sbjct: 130 AFILLAFLLPET 141
|
Length = 141 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 36/149 (24%), Positives = 60/149 (40%), Gaps = 11/149 (7%)
Query: 392 LFKKSVIIFFLWFVCSLTYYGLSWNTANLGG--------NIYLNFIISGMVEIPAYLSSM 443
L + +++ +F+ S YYGL L + G+ I L
Sbjct: 173 LLRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGG 232
Query: 444 LTLDRYGRKN-FLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFS 502
L DR GR+ L L+L+ L L++ AL P + +V ++ F + A+ A+ +
Sbjct: 233 LLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLA--LLLVALLLLGFGLGFAFPALLTLA 290
Query: 503 AEQFPTVIRNIGIGAGSTFARVGGIFASY 531
+E P R G +TF +GG
Sbjct: 291 SELAPPEARGTASGLFNTFGSLGGALGPL 319
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 5e-07
Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 1/131 (0%)
Query: 193 AFLMMGVLLGSLIFGDISDRFGRKP-TFMISILIMDVFGTLAAFAPDFWTFTACRLIVGA 251
+ +G +LG+L+ G +SDR GR+ +I +L+ + L A AP L++G
Sbjct: 218 SLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGF 277
Query: 252 STSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHDWRHLDILVTLP 311
F LA E+ P R A + + F S+G L LA + D + +
Sbjct: 278 GLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLIL 337
Query: 312 GLIYLAYWWFI 322
+ L +
Sbjct: 338 AALALLAALLL 348
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|182163 PRK09952, PRK09952, shikimate transporter; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 75/289 (25%), Positives = 125/289 (43%), Gaps = 59/289 (20%)
Query: 189 GTSDAFLMMGV-----LLGSLIFGDISDRFGRKPTFMISILIMDV----FGTLAAFAPDF 239
GT AF GV LG ++FG DR GRK M+++ +M + G L +F+
Sbjct: 62 GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIG 121
Query: 240 W----TFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLA 295
W R I G + G + A +LA+E +K+ + + + + +G LL GL
Sbjct: 122 WWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLV 181
Query: 296 YFVHDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEG 355
I + +L++ W IP +L S I+ ++L
Sbjct: 182 SL--------ISMMTTDEQFLSWGWRIP----FLFS---------IV--------LVLIA 212
Query: 356 FVLDGLLAPSPEEEEKLKAQNDGPK--PSIFELFRHPNLFKKSVIIFF--LWFVCSLTYY 411
+ + S E E++ Q K P I L RHP F K + + L + +T +
Sbjct: 213 LWVRNGMEESAEFEQQQHEQAAAKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAF 272
Query: 412 GLSWNTANLG--GNIYLN--FIISGM--VEIP--AYLSSMLTLDRYGRK 452
L+++T NLG ++LN ++ G+ + IP A+L+ DR+GR+
Sbjct: 273 ALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLA-----DRFGRR 316
|
Length = 438 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 193 AFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAP--DFWTFTACRLIVG 250
+ +LG+ ++ ++ RFG+K TF++ +L+ + L F P W F ++ G
Sbjct: 264 LIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPPGSLWLFLVLVVLAG 323
Query: 251 ASTSGVFLVAYVLALEMV 268
L+ + + ++V
Sbjct: 324 IGLGLATLLPWAMLADVV 341
|
This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
| >gnl|CDD|237958 PRK15403, PRK15403, multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 43/132 (32%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 205 IFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWT----FTACRLIVGASTSGVFLVA 260
+ G +SDR GR+P + LI TLA A F T F R I G S + V
Sbjct: 70 LLGPLSDRIGRRPVLITGALIF----TLACAATLFTTSMTQFLIARFIQGTSICFIATVG 125
Query: 261 YVLALEMVGPSKRI----IAGTVIHMFFSIGFLLIAGLAYFVHDWRHLDILVTLPGLIYL 316
YV E G +K I I +++ + IG L A L +FVH W+ L ++ + GLI
Sbjct: 126 YVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH-WKVLFAIIAVMGLIAF 184
Query: 317 AYWWF-IPESAR 327
+PE+ +
Sbjct: 185 VGLLLAMPETVK 196
|
Length = 413 |
| >gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 4e-04
Identities = 32/140 (22%), Positives = 59/140 (42%), Gaps = 5/140 (3%)
Query: 190 TSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLI- 248
T +L+ G G L++G +SDR+GR+P ++ + I + A + + T R +
Sbjct: 45 TLTLYLL-GFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQ 103
Query: 249 -VGASTSGVFLVAYVLALEMVGPSKRIIAG-TVIHMFFSIGFLLIAGLAYFVHDWRHLDI 306
GAS V A V + RI + + L+ G W +
Sbjct: 104 AFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFA 163
Query: 307 LVTLPGLIYLA-YWWFIPES 325
++L G++ A ++ +PE+
Sbjct: 164 FLSLAGILLSALIFFILPET 183
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. Length = 385 |
| >gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.004
Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 7/117 (5%)
Query: 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVF-GTLAAFAPDFWTFT 243
+ + G A +G LLG+L+ G + F R +I ++ + + P+F F
Sbjct: 246 STHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPPNFPLFL 305
Query: 244 ACRLIVGASTSGVFLVAYVLALEMVGPSK---RIIA--GTVIHMFFSIGFLLIAGLA 295
+G G V L+ P++ R+ ++ H + +G +L LA
Sbjct: 306 VLWFAIGV-GYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLA 361
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 365 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 690 | |||
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| KOG0255|consensus | 521 | 100.0 | ||
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| KOG0253|consensus | 528 | 100.0 | ||
| KOG0569|consensus | 485 | 100.0 | ||
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| KOG0254|consensus | 513 | 100.0 | ||
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.97 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.97 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.97 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.97 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.97 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.97 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.97 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.96 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.96 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.96 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.96 | |
| KOG0252|consensus | 538 | 99.96 | ||
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.96 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.96 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.96 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.96 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.96 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.96 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.95 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.95 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.95 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.95 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.95 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.95 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.95 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.95 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.95 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.95 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.94 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.94 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.94 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.94 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.94 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.94 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.94 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.94 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.94 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.94 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.94 | |
| KOG2532|consensus | 466 | 99.94 | ||
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.94 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.94 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.94 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.93 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.93 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.93 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.93 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.93 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.93 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.93 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.93 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.93 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.93 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.92 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.92 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.92 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.92 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.92 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.92 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.92 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.92 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.91 | |
| KOG2533|consensus | 495 | 99.91 | ||
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.91 | |
| KOG1330|consensus | 493 | 99.91 | ||
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.9 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.9 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.9 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.9 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.89 | |
| KOG2615|consensus | 451 | 99.89 | ||
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.89 | |
| KOG2504|consensus | 509 | 99.89 | ||
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.89 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.88 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.87 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.87 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.87 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.87 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.86 | |
| KOG3764|consensus | 464 | 99.85 | ||
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.85 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.85 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.85 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.83 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.82 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.82 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.8 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.79 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.79 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.78 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.78 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.78 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.78 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.74 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.74 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.73 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.71 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.68 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.68 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.66 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.65 | |
| KOG4686|consensus | 459 | 99.64 | ||
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.51 | |
| KOG2563|consensus | 480 | 99.44 | ||
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.41 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.4 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.38 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.32 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.29 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.25 | |
| KOG2816|consensus | 463 | 99.22 | ||
| KOG3626|consensus | 735 | 99.17 | ||
| KOG2325|consensus | 488 | 99.16 | ||
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.06 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.06 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.06 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.05 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.04 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.03 | |
| KOG3098|consensus | 461 | 99.03 | ||
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.03 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.02 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.01 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.0 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 98.98 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 98.98 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 98.97 | |
| KOG3762|consensus | 618 | 98.97 | ||
| PRK12382 | 392 | putative transporter; Provisional | 98.97 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 98.96 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 98.96 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 98.95 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 98.95 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 98.95 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 98.94 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 98.94 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 98.94 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 98.93 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.93 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 98.92 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 98.92 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 98.91 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 98.91 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 98.9 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 98.9 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 98.89 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 98.88 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 98.88 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 98.88 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 98.85 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 98.83 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 98.83 | |
| PRK10504 | 471 | putative transporter; Provisional | 98.82 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 98.81 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 98.81 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 98.8 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 98.78 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 98.78 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 98.77 | |
| PRK03699 | 394 | putative transporter; Provisional | 98.77 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 98.77 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 98.76 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 98.75 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 98.75 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 98.75 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 98.75 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 98.74 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 98.74 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 98.73 | |
| PRK11043 | 401 | putative transporter; Provisional | 98.72 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 98.71 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.71 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 98.7 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 98.69 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 98.69 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 98.68 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 98.67 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 98.67 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 98.66 | |
| KOG2615|consensus | 451 | 98.65 | ||
| KOG3764|consensus | 464 | 98.63 | ||
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.63 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 98.63 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.62 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 98.61 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.6 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 98.6 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 98.6 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 98.56 | |
| KOG3810|consensus | 433 | 98.56 | ||
| KOG1330|consensus | 493 | 98.54 | ||
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.54 | |
| KOG0569|consensus | 485 | 98.54 | ||
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 98.53 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 98.51 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.5 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 98.48 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 98.47 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 98.47 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.47 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.47 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.47 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.45 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 98.45 | |
| KOG2504|consensus | 509 | 98.44 | ||
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.44 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 98.43 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 98.43 | |
| KOG0255|consensus | 521 | 98.42 | ||
| KOG4332|consensus | 454 | 98.39 | ||
| PRK10133 | 438 | L-fucose transporter; Provisional | 98.38 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.37 | |
| KOG2532|consensus | 466 | 98.37 | ||
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 98.37 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.37 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 98.34 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.32 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.31 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.31 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.27 | |
| KOG0254|consensus | 513 | 98.26 | ||
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.26 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 98.26 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.18 | |
| KOG0253|consensus | 528 | 98.15 | ||
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 98.14 | |
| KOG2533|consensus | 495 | 98.06 | ||
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.05 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.04 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.04 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.02 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.02 | |
| PRK11462 | 460 | putative transporter; Provisional | 97.97 | |
| KOG0637|consensus | 498 | 97.91 | ||
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 97.86 | |
| KOG4686|consensus | 459 | 97.85 | ||
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.82 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 97.74 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 97.73 | |
| KOG2816|consensus | 463 | 97.71 | ||
| KOG0252|consensus | 538 | 97.7 | ||
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 97.65 | |
| KOG3762|consensus | 618 | 97.64 | ||
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 97.63 | |
| KOG2325|consensus | 488 | 97.6 | ||
| KOG3574|consensus | 510 | 97.6 | ||
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 97.59 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.55 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 97.5 | |
| KOG1237|consensus | 571 | 97.37 | ||
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 97.25 | |
| KOG2563|consensus | 480 | 97.19 | ||
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 96.99 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 96.96 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.9 | |
| KOG3880|consensus | 409 | 96.68 | ||
| KOG1479|consensus | 406 | 96.55 | ||
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 96.54 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 96.52 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 96.45 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 96.37 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 96.14 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 95.98 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 95.86 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 95.76 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 95.28 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 95.22 | |
| KOG3098|consensus | 461 | 95.11 | ||
| PRK03612 | 521 | spermidine synthase; Provisional | 93.71 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 93.2 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 93.04 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 90.92 | |
| KOG3626|consensus | 735 | 90.4 | ||
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 89.89 | |
| KOG3880|consensus | 409 | 89.17 | ||
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 88.86 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 87.87 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 87.72 | |
| KOG0637|consensus | 498 | 86.94 | ||
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 86.05 | |
| KOG1479|consensus | 406 | 85.74 | ||
| KOG2601|consensus | 503 | 82.83 |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-58 Score=515.06 Aligned_cols=492 Identities=41% Similarity=0.741 Sum_probs=421.3
Q ss_pred CCCCcHHHHHHHHHHHHHHHH-HHHhHHHHhcCCCCCCccccCCCCCCCCCCCCCC-cccccccccCCCCCCCCCccccc
Q psy2962 24 PLFGGFPGRTSLYLFINSFSR-LSVRLMMFLIQIDIFISRCALPNEQDIAYFTPLS-PNASSLSYPWDSVQKSYSSCVRY 101 (690)
Q Consensus 24 ~~~G~~Q~~~~~~~~~~~~~~-~~~~~~~f~~~~~~p~~~C~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~C~~~ 101 (690)
|+|||||++++++++++.++. +|.++++|+ +.+|||||+.|+.. +++ +++++.++|+++++++ ++|++|
T Consensus 1 g~~g~~q~~~~~~~~~~~~~~~~~~~~~~f~--~~~p~~~c~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~ 71 (505)
T TIGR00898 1 GEFGPFQRRTFLLLALPIALLAFHFVLIVFL--GATPEHHCRLPDAA------NLSSRCELNLTLPRLPDGRP-ESCLRF 71 (505)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCCCcccCCCCcc------cCChHhHhceeccCCCCCCC-CCCccc
Confidence 699999999999999999999 999999999 99999999988432 223 2356888999888886 999999
Q ss_pred ccCC-CcccccCC-------CCCCCccCCCC-ceecCCc--cceeehhhhhhhhccCCCCCcchhccchhhcccccCCCc
Q psy2962 102 DANF-TPEYYAGG-------QSANNTVPCDR-WLFDPEW--NTTVSEVLMVFHRRLGDKVPSLYIDLNQTIQYSRSTQEP 170 (690)
Q Consensus 102 ~~~~-~~~~~~~~-------~~~~~~~~C~~-w~y~~~~--~tiv~e~~p~~~~~fg~~~~~~~~~~~~~~~~~~~~~~~ 170 (690)
+.+. ......+. .......+|.+ |+|+.+. +++++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e--------------------------------- 118 (505)
T TIGR00898 72 MVDQWANPSLLGCEPLKLSDLGLAATEPCLDGWEYSYDTFSSTIVTE--------------------------------- 118 (505)
T ss_pred cccchhhhcccccccchhcccCCCCCCCCCCCcEecCCcccccEEEE---------------------------------
Confidence 7642 21111110 01224567877 9999754 889999
Q ss_pred cccccccceeeeCCccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHH
Q psy2962 171 VLTNFVMWSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVG 250 (690)
Q Consensus 171 ~~~~~~~~~LvC~~~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G 250 (690)
||++|+++++.+++++++++|.+++++++|+++||+|||++++++.++.+++.++.+++++++.++++|++.|
T Consensus 119 -------~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G 191 (505)
T TIGR00898 119 -------WDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVG 191 (505)
T ss_pred -------ecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHhcCchhHHH
Q psy2962 251 ASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHDWRHLDILVTLPGLIYLAYWWFIPESARWLI 330 (690)
Q Consensus 251 ~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~ 330 (690)
++.++..+...+++.|++|+++|+++.++...++.+|.++++.+++.+.+||+.+++.+++.++..+..+++||||+|+.
T Consensus 192 ~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~ 271 (505)
T TIGR00898 192 MGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLI 271 (505)
T ss_pred hhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999989999999999998888777788999999999
Q ss_pred hcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHHH
Q psy2962 331 SKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTY 410 (690)
Q Consensus 331 ~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 410 (690)
.++|.+++++.+++.++.|+....++..... .+++.+.+.++.++++++|+|.++...+...+.|+.....|
T Consensus 272 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 343 (505)
T TIGR00898 272 SQGRIEEALKILQRIAKINGKKLPAEVLSLS--------LEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAFSY 343 (505)
T ss_pred HCCCHHHHHHHHHHHHHHcCCCCCHHHHhhh--------hhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988765443221110 00111111224578899999999999998888999999999
Q ss_pred HHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q psy2962 411 YGLSWNTANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFF 490 (690)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~ 490 (690)
|++.++...++.+.+....+.++.++++.++.+++.||+|||+.+.++.++.+++++++.+.+....+...+..++.+++
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 423 (505)
T TIGR00898 344 YGLVLDLGNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFG 423 (505)
T ss_pred HHHhccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 99998888888888888889999999999999999999999999999999999888888777655445555666677788
Q ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCccccccccccccchhhccccCCCcch
Q psy2962 491 ITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQ 570 (690)
Q Consensus 491 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (690)
.+..++..+.+.+|++|++.|++++|+.++++++|++++|++.+. .
T Consensus 424 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~~--------~-------------------------- 469 (505)
T TIGR00898 424 ITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYL--------G-------------------------- 469 (505)
T ss_pred HHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHHH--------H--------------------------
Confidence 888889999999999999999999999999999999999999875 3
Q ss_pred hhccccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHhhhccCCCCCCCCCc
Q psy2962 571 ITRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSLILPETHHKKLPES 625 (690)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~~ 625 (690)
..+...+++++++++++++++.+++|||++++++|+
T Consensus 470 -------------------~~~~~~~~~~~~~~~~~~~~~~~~lpet~~~~l~~t 505 (505)
T TIGR00898 470 -------------------EKWLFLPLVLFGGLALLAGILTLFLPETKGVPLPET 505 (505)
T ss_pred -------------------HHHHhhHHHHHHHHHHHHHHHHHcCcCCCCCCCCCC
Confidence 445677899999999999998889999999998874
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-48 Score=434.68 Aligned_cols=496 Identities=40% Similarity=0.669 Sum_probs=412.5
Q ss_pred hHHhhhhcCCcccccCCCCCcHHHHHHHHHHHHHHHH-HHHhHHHHhcCCCCCCccccCCCCCCCCCCCCCCcccccccc
Q psy2962 8 RHEILVKTGATVGGILPLFGGFPGRTSLYLFINSFSR-LSVRLMMFLIQIDIFISRCALPNEQDIAYFTPLSPNASSLSY 86 (690)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~G~~Q~~~~~~~~~~~~~~-~~~~~~~f~~~~~~p~~~C~~~~~~~~~~~~~~~~~~~~~~~ 86 (690)
-||++++.| ++|+||+....+.+++.++. .|....+|. ...|+|+|. ... . ..+
T Consensus 3 ~~~~~~~~~--------~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~-~~~---~-----~~~------ 57 (521)
T KOG0255|consen 3 LDEILSSVG--------DFGRYQKLLLLLLGLPSIFSALHSFAQIFL--AFVPDHHCT-EWG---C-----LND------ 57 (521)
T ss_pred hHHHHHHhc--------CCcHHHHHHHHHHHHHHhHHHHHHHHHHhh--ccCCCchhh-hhh---c-----ccC------
Confidence 356666666 99999999999999999999 999999999 999998876 110 0 000
Q ss_pred cCCCCCCCCCccccccc-CCCcccccCC----CCCCCccCCCC-ceecCCc--cceeehhhhhhhhccCCCCCcchhccc
Q psy2962 87 PWDSVQKSYSSCVRYDA-NFTPEYYAGG----QSANNTVPCDR-WLFDPEW--NTTVSEVLMVFHRRLGDKVPSLYIDLN 158 (690)
Q Consensus 87 p~~~~~~~~~~C~~~~~-~~~~~~~~~~----~~~~~~~~C~~-w~y~~~~--~tiv~e~~p~~~~~fg~~~~~~~~~~~ 158 (690)
.. ++|+++.. ++++...... ........|.. |.|+.+. .++++|
T Consensus 58 ------~~-~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--------------------- 109 (521)
T KOG0255|consen 58 ------AE-DSCLVYWDPTLDPANPLNWPSWKKWLLVIVICLDGWVYDYGSSVYSIVSE--------------------- 109 (521)
T ss_pred ------Cc-ccceecccCccCcCCccccccccccccccccccceeEecCCCCcccccch---------------------
Confidence 11 67777654 2221111110 01123455655 9998765 788999
Q ss_pred hhhcccccCCCccccccccceeeeCCccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhcccc
Q psy2962 159 QTIQYSRSTQEPVLTNFVMWSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPD 238 (690)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~LvC~~~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s 238 (690)
|+++|++.+...+.++++++|.++|++++|+++||+|||+++++++++.+++.++.++++|
T Consensus 110 -------------------~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~ 170 (521)
T KOG0255|consen 110 -------------------WNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPN 170 (521)
T ss_pred -------------------hceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHH
Q psy2962 239 FWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHDWRHLDILVTLPGLIYLAY 318 (690)
Q Consensus 239 ~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~~Wr~~~~i~~i~~ll~~~~ 318 (690)
++.+++.|++.|++.++......+++.|++++++|+.+.++....+..|.+..+..++++.+||+.+++..+++++.+++
T Consensus 171 ~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~ 250 (521)
T KOG0255|consen 171 YWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLL 250 (521)
T ss_pred HHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999777778888888888888899999999999999988887
Q ss_pred HHHhcCchhHHHhcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHH
Q psy2962 319 WWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVI 398 (690)
Q Consensus 319 ~~~lpesp~~l~~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 398 (690)
+++.||||||+..++|.+++.+.++++++.|+.....+....... ..+.......+++..+.++++.|++++.++.
T Consensus 251 ~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~ 326 (521)
T KOG0255|consen 251 WFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLEL----LLRPLKLLFTEPKISFLDLFRTPRLRYRTLY 326 (521)
T ss_pred HHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHH----HhhHhhhhccCCCCchhhhhcCHHHHHHHHH
Confidence 777779999999999999999999999999854433221111100 0011122223344668999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChh-
Q psy2962 399 IFFLWFVCSLTYYGLSWNTANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLN- 477 (690)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~- 477 (690)
..+.|+.....||++.+....++.+.+....+.+..+.++....+...+++|||..+..+.++.+++++...+.+....
T Consensus 327 ~~~~~~~~~~~y~gl~~~~~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (521)
T KOG0255|consen 327 LLFIWFVFSLVYYGLSLNVSGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGG 406 (521)
T ss_pred HHHHHHHHhHHHHhhhhhhhhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988876544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCccccccccccccc
Q psy2962 478 TVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITK 557 (690)
Q Consensus 478 ~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (690)
++..+...+++++.+..+...+.+.+|++|+..|+.+.|.+++.+++|++++|++.... .
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~-------~------------- 466 (521)
T KOG0255|consen 407 WLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLL-------R------------- 466 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------h-------------
Confidence 36677788888999999999999999999999999999999999999999999998651 1
Q ss_pred hhhccccCCCcchhhccccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHh-hhccCCCCCCCCCcHHhhhh
Q psy2962 558 KCLITYKTMPKEQITRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILS-LILPETHHKKLPESIADGEN 631 (690)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~lpet~~~~l~~~~~~~e~ 631 (690)
......++.+++.++.+.++++ +++|||++++++++.+|.++
T Consensus 467 --------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~~~ 509 (521)
T KOG0255|consen 467 --------------------------------QMFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLDAEN 509 (521)
T ss_pred --------------------------------hhcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHHHHh
Confidence 2233444455677777777777 69999999999999988876
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=379.28 Aligned_cols=383 Identities=22% Similarity=0.412 Sum_probs=304.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
..+.+++.+++++|.++|++++|+++||+|||+++++++++.++++++++++++++.++++|++.|++.|+..+...+++
T Consensus 201 ~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~i 280 (742)
T TIGR01299 201 DSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYF 280 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh----------------hhchHHHHHHHHHHHHHHHHHHHhcCchhH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV----------------HDWRHLDILVTLPGLIYLAYWWFIPESARW 328 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l----------------~~Wr~~~~i~~i~~ll~~~~~~~lpesp~~ 328 (690)
.|++|+++|++..+++.+++.+|.++++.++..+ .+||+++++.+++.++.++..+++||||+|
T Consensus 281 sE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrw 360 (742)
T TIGR01299 281 AEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRF 360 (742)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 9999999999999999999999999998876543 259999999999988888888899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCcc--hhhhh--hcccCCCchHHH-HhhhhcC---------------CCCccchhhcc
Q psy2962 329 LISKGRNEEAKLIIQAVAEENKVIL--EGFVL--DGLLAPSPEEEE-KLKAQND---------------GPKPSIFELFR 388 (690)
Q Consensus 329 l~~~~~~~ea~~~l~~~~~~n~~~~--~~~~~--~~~~~~~~~~~~-~~~~~~~---------------~~~~~~~~l~~ 388 (690)
+..++|.++|.++++++++.|+... +.... +.........+. +.+.... ....+++++|+
T Consensus 361 L~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~ 440 (742)
T TIGR01299 361 FLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFN 440 (742)
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcC
Confidence 9999999999999999988776432 11110 000000000000 0000000 00113555665
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhhccCCC----------------------------------------------C-
Q psy2962 389 HPNLFKKSVIIFFLWFVCSLTYYGLSWNTANL----------------------------------------------G- 421 (690)
Q Consensus 389 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l----------------------------------------------~- 421 (690)
+.+++.++..++.|+...+.||++..+...+ +
T Consensus 441 -~~~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (742)
T TIGR01299 441 -PEVREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGL 519 (742)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcc
Confidence 5678889999999999888888865431100 0
Q ss_pred ---------------------------------------------------------------------------chHHH
Q psy2962 422 ---------------------------------------------------------------------------GNIYL 426 (690)
Q Consensus 422 ---------------------------------------------------------------------------~~~~~ 426 (690)
...+.
T Consensus 520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~ 599 (742)
T TIGR01299 520 KFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYF 599 (742)
T ss_pred cccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHH
Confidence 01234
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy2962 427 NFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQF 506 (690)
Q Consensus 427 ~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~ 506 (690)
..++.+++.+++.+++++++||+|||+++++++++.+++++++.+.++ ....+++.++.+++.++.+++.+++++|++
T Consensus 600 ~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s--~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~ 677 (742)
T TIGR01299 600 VNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNS--ESAMIALLCLFGGLSIAAWNALDVLTVELY 677 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455667889999999999999999999999999999998888777654 233444455666777788889999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCccccccccccccchhhccccCCCcchhhccccchhhhhhhhh
Q psy2962 507 PTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVILIDQVFL 586 (690)
Q Consensus 507 p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (690)
|++.|++++|+.+..+++|++++|++.+.. .
T Consensus 678 Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L-------~------------------------------------------ 708 (742)
T TIGR01299 678 PSDKRATAFGFLNALCKAAAVLGILIFGSF-------V------------------------------------------ 708 (742)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H------------------------------------------
Confidence 999999999999999999999999998751 1
Q ss_pred hhhcccchhhHHHHHHHHHHHHHHhhhccCCCCCCC
Q psy2962 587 LQVEIWLPLPFLMFGVLSLTAGILSLILPETHHKKL 622 (690)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l 622 (690)
..+...+|++++++.++++++.+++|||+++.+
T Consensus 709 ---~~~~~~pf~i~a~~lll~~ll~~~LPET~~~~l 741 (742)
T TIGR01299 709 ---GITKAAPILFASAALACGGLLALKLPDTRGQVL 741 (742)
T ss_pred ---HhhhHHHHHHHHHHHHHHHHHHHhCCCCccccc
Confidence 234567888999998888888888899998764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=334.46 Aligned_cols=380 Identities=27% Similarity=0.492 Sum_probs=321.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
..+.+++....+.|.++++..+|.++|++|||+.+.+..+..++..++.++++|+..+.++|.+.|+|.|+ .|...++-
T Consensus 112 ~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~y 190 (528)
T KOG0253|consen 112 EGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIY 190 (528)
T ss_pred hhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHH
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHHHHHHHhcCchhHHHhcCCHHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLI 341 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---~~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~~~~ea~~~ 341 (690)
.|..|..+|...+-.. ..|.+|.++...+++.. .||||..+..+++..++..+.+++|||||++..+|+.++|.+.
T Consensus 191 le~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAlet 269 (528)
T KOG0253|consen 191 LEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALET 269 (528)
T ss_pred HHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHH
Confidence 9999999999988877 99999999999999887 4899999999999888888899999999999999999999999
Q ss_pred HHHHHHHcCCcchhhhhhcccCCCchHHH-----HhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2962 342 IQAVAEENKVILEGFVLDGLLAPSPEEEE-----KLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWN 416 (690)
Q Consensus 342 l~~~~~~n~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 416 (690)
++++|+.|+.+.+...+.....+..++++ ...+..++...+..+++. |.+++..+.....|+.+.+.||+..+.
T Consensus 270 L~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLls-p~lrkttlllw~iwfgnafsyyg~VLl 348 (528)
T KOG0253|consen 270 LHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLS-PKLRKTTLLLWRIWFGNAFSYYGSVLL 348 (528)
T ss_pred HHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcC-hHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999988764433222111111101 011112333455666765 889999999999999999999998754
Q ss_pred cCCC---------------------------CchHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHH
Q psy2962 417 TANL---------------------------GGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVS 469 (690)
Q Consensus 417 ~~~l---------------------------~~~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~ 469 (690)
...+ ...-|...++..+.++||.++.++++||+|||+++..++++++++.+++
T Consensus 349 ttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll 428 (528)
T KOG0253|consen 349 TTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLL 428 (528)
T ss_pred HHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 2211 1224667788899999999999999999999999999999999888877
Q ss_pred HhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCccccc
Q psy2962 470 ALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEY 549 (690)
Q Consensus 470 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~ 549 (690)
...... ....++.+.+.++.++.+.+.|+|+.|++|+..|+++.|.++.++++|+++.|++... .
T Consensus 429 ~~c~~r--n~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA~~--------~----- 493 (528)
T KOG0253|consen 429 TTCKTR--NAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIAMR--------A----- 493 (528)
T ss_pred HHhcCc--chhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHHHH--------h-----
Confidence 665443 3456677788899999999999999999999999999999999999999999999843 3
Q ss_pred cccccccchhhccccCCCcchhhccccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHhhhcc-CCCCCCC
Q psy2962 550 YNSSTITKKCLITYKTMPKEQITRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSLILP-ETHHKKL 622 (690)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lp-et~~~~l 622 (690)
......+..++++++++++++..++| |||+|.+
T Consensus 494 ----------------------------------------e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 494 ----------------------------------------ELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred ----------------------------------------ccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 55567899999999999999998777 8998864
|
|
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-37 Score=325.79 Aligned_cols=387 Identities=23% Similarity=0.279 Sum_probs=303.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhc---cccHHHHHHHHHHHHhhhhhhHHHHHH
Q psy2962 186 WYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAF---APDFWTFTACRLIVGASTSGVFLVAYV 262 (690)
Q Consensus 186 ~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~---s~s~~~l~~~R~l~G~~~g~~~~~~~~ 262 (690)
...+.+.+++.+|.++|+++.|+++||+|||..++++.++..++++++.+ ++++++++++|++.|+..|........
T Consensus 60 ~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pm 139 (485)
T KOG0569|consen 60 LLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPM 139 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 46788899999999999999999999999999999999999888887766 578999999999999999999999999
Q ss_pred HHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh-----hhchHHHHHHHHHHHHHHHHHHHhcCchhHHHh-cCCHH
Q psy2962 263 LALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV-----HDWRHLDILVTLPGLIYLAYWWFIPESARWLIS-KGRNE 336 (690)
Q Consensus 263 ~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l-----~~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~-~~~~~ 336 (690)
++.|..|.+.||....+.+.+..+|.+++..++.-- ..|++++.+..+++++.++...++|||||||.. |++.+
T Consensus 140 yl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~ 219 (485)
T KOG0569|consen 140 YLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEE 219 (485)
T ss_pred HHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHH
Confidence 999999999999999999999999999997776542 259999999999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHH------HHHHHH
Q psy2962 337 EAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWF------VCSLTY 410 (690)
Q Consensus 337 ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~------~~~~~~ 410 (690)
||++.+++.+..+..+...+...+ +.++++..+++..+++++++++.+|+...+.+...+ .+...+
T Consensus 220 ~A~~sl~~y~G~~~~~~~~e~~~~--------e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~ 291 (485)
T KOG0569|consen 220 EARKALKFYRGKEDVEAEIEEMLR--------EIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFF 291 (485)
T ss_pred HHHHHHHHHhCCCcchhHHHHHHH--------HHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHH
Confidence 999999998765543322221111 011222223366789999999999988666655544 344556
Q ss_pred HHHhhcc-CCCC-chHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhc---CCCh-hHH---HH
Q psy2962 411 YGLSWNT-ANLG-GNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALL---PLDL-NTV---SI 481 (690)
Q Consensus 411 ~~~~~~~-~~l~-~~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~---~~~~-~~~---~~ 481 (690)
|...++. .++. ..+.......+++.++..+++.+++||+|||++++.++.++.+..+++... .+.. .|. .+
T Consensus 292 Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i 371 (485)
T KOG0569|consen 292 YSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCI 371 (485)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 6665443 2333 345567778889999999999999999999999999998888877766543 1111 222 23
Q ss_pred HHHHHHHHHHHHH-HHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCccccccccccccchhh
Q psy2962 482 VLAMMGKFFITGA-YGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCL 560 (690)
Q Consensus 482 ~~~~l~~~~~~~~-~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (690)
++.++..++.+.+ -|+.+.+.+|++|++.|+.++++..++.++..++..+...... .
T Consensus 372 ~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~------~---------------- 429 (485)
T KOG0569|consen 372 AAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQ------N---------------- 429 (485)
T ss_pred HHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH------H----------------
Confidence 4444444444444 4688999999999999999999999999999888777665411 1
Q ss_pred ccccCCCcchhhccccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHhh-hccCCCCCCCCCcHHhhhhc
Q psy2962 561 ITYKTMPKEQITRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSL-ILPETHHKKLPESIADGENF 632 (690)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~lpet~~~~l~~~~~~~e~~ 632 (690)
..+ ...|+++.+.++++++.++ .+||||+|+..|..++.++.
T Consensus 430 -----------------------------~~g-~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 430 -----------------------------VIG-PYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred -----------------------------Hhc-chhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHhC
Confidence 233 3778888888888888776 89999999887755555443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=331.88 Aligned_cols=387 Identities=22% Similarity=0.331 Sum_probs=272.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhcccc------HHHHHHHHHHHHhhhhhhHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPD------FWTFTACRLIVGASTSGVFL 258 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s------~~~l~~~R~l~G~~~g~~~~ 258 (690)
+.+.+++.+.+.+|.+++++++|+++||+|||++++++.++..++.++++++++ ++.++++|++.|++.|...+
T Consensus 55 ~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~ 134 (502)
T TIGR00887 55 SSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYP 134 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhH
Confidence 456789999999999999999999999999999999999999999999998876 78999999999999999999
Q ss_pred HHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh--------------------------hhchHHHHHHHHHH
Q psy2962 259 VAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV--------------------------HDWRHLDILVTLPG 312 (690)
Q Consensus 259 ~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l--------------------------~~Wr~~~~i~~i~~ 312 (690)
...+++.|++|+++|++++++...+..+|.++++.++..+ .+||+++.+.++++
T Consensus 135 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~ 214 (502)
T TIGR00887 135 LSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPA 214 (502)
T ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988877543 15999999999998
Q ss_pred HHHHHHHHHhcCchhHHHhcCCHH-HHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCc-
Q psy2962 313 LIYLAYWWFIPESARWLISKGRNE-EAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHP- 390 (690)
Q Consensus 313 ll~~~~~~~lpesp~~l~~~~~~~-ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~- 390 (690)
++.++..+++||||||+..|+|.+ ++++.+++..+.+..+..++ .++ .+. +.+..+.+++++++++
T Consensus 215 ~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~---------~~~--~~~~~~~~~~~l~~~~~ 282 (502)
T TIGR00887 215 LLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAEPDE-VEK---------AST--AVEVPKASWSDFFTHFF 282 (502)
T ss_pred HHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccccCccc-ccc---------hhc--cccchhhhHHHHHHHHh
Confidence 888888889999999999998875 46666666543221111000 000 000 0011123577777642
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhhc----cCCCCch------H---------HHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2962 391 --NLFKKSVIIFFLWFVCSLTYYGLSWN----TANLGGN------I---------YLNFIISGMVEIPAYLSSMLTLDRY 449 (690)
Q Consensus 391 --~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~l~~~------~---------~~~~~~~~l~~i~~~~~~~~l~dr~ 449 (690)
+.++..+.....++...+.+|+...+ ....+.+ . .....+..+..+++.+++++++||+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~ 362 (502)
T TIGR00887 283 KWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDII 362 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 23334444445555555566653221 1112211 0 0122334456778899999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHH-HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q psy2962 450 GRKNFLCPCLILSGLCLIVSALLPLD-LNTVSIVLAMMGK-FFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGI 527 (690)
Q Consensus 450 grr~~l~~~~~~~~i~~l~~~~~~~~-~~~~~~~~~~l~~-~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~ 527 (690)
|||++++.+..+++++++++.+.... .........++.. ++..+..++.+.+.+|++|++.|+++.|+.++++++|++
T Consensus 363 gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~ 442 (502)
T TIGR00887 363 GRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAI 442 (502)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHH
Confidence 99999988887777766655543211 1111112222222 222334557788899999999999999999999999999
Q ss_pred HHHHHHHHccccccccCccccccccccccchhhccccCCCcchhhccccchhhhhhhhhhhhcccchhhHHHHHHHHHHH
Q psy2962 528 FASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTA 607 (690)
Q Consensus 528 i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 607 (690)
++|++.+....+ . + + ..|. ....+....+++++++++++
T Consensus 443 ~~~~~~~~l~~~----~---------------~------~-----~~~~-----------~~~~~~~~~~~i~~~~~~~~ 481 (502)
T TIGR00887 443 IGQFGFLYLAQH----G---------------D------P-----TKGY-----------PTGIWMGHVLEIFALFMFLG 481 (502)
T ss_pred HHHHHhhhhhcc----c---------------c------c-----cccc-----------cccccchHHHHHHHHHHHHH
Confidence 999998862100 0 0 0 0000 00123356788888888888
Q ss_pred HHHhhhccCCCCCCCCC
Q psy2962 608 GILSLILPETHHKKLPE 624 (690)
Q Consensus 608 ~~~~~~lpet~~~~l~~ 624 (690)
.+..+++|||++++++|
T Consensus 482 ~i~~~~lpEt~~~~lee 498 (502)
T TIGR00887 482 ILFTLLIPETKGKSLEE 498 (502)
T ss_pred HHHheEeccCCCCCHHh
Confidence 77777889999987644
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=301.95 Aligned_cols=378 Identities=18% Similarity=0.284 Sum_probs=261.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhcc------------ccHHHHHHHHHHHHhh
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFA------------PDFWTFTACRLIVGAS 252 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s------------~s~~~l~~~R~l~G~~ 252 (690)
+.+.+++.+++++|.+++++++|+++||+|||++++++.++.+++.++++++ +.++.++++|+++|++
T Consensus 54 ~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~ 133 (479)
T PRK10077 54 NSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIG 133 (479)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhh
Confidence 6788999999999999999999999999999999999999999998887763 2256788999999999
Q ss_pred hhhhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh-----------hhchHHHHHHHHHHHHHHHHHHH
Q psy2962 253 TSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV-----------HDWRHLDILVTLPGLIYLAYWWF 321 (690)
Q Consensus 253 ~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l-----------~~Wr~~~~i~~i~~ll~~~~~~~ 321 (690)
.|+..+...+++.|++|+++|++++++.+.+..+|.++++.++..+ .+||+.|++.+++.++..+..++
T Consensus 134 ~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~ 213 (479)
T PRK10077 134 VGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYF 213 (479)
T ss_pred HhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999988877654 27999999998888887777788
Q ss_pred hcCchhHHHhcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHH
Q psy2962 322 IPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFF 401 (690)
Q Consensus 322 lpesp~~l~~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 401 (690)
+||+|+|+..+++.+++++.+++..+.+. .....++. .....+.... .+..+... ..........
T Consensus 214 l~~s~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--------~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~ 278 (479)
T PRK10077 214 VPETPRYLMSRGKQEQAEGILRKIMGNTL---ATQALQEI--------KHSLDHGRKT---GGKLLMFG-VGVIVIGVML 278 (479)
T ss_pred CCCCcHHHHHcCCHHHHHHHHHHHcCChh---HHHHHHHH--------HHHHHHhhhh---hhhhcchh-HHHHHHHHHH
Confidence 99999999889998888777666532111 01000000 0000000000 01111110 0111111111
Q ss_pred HHHH-----HHHHHHHHhhccCCCC---chHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcC
Q psy2962 402 LWFV-----CSLTYYGLSWNTANLG---GNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLP 473 (690)
Q Consensus 402 ~~~~-----~~~~~~~~~~~~~~l~---~~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~ 473 (690)
..+. +...||.+.+ ....+ ..........++..+++.+++++++||+|||+.++.+.++++++.+++....
T Consensus 279 ~~~~~~~~~~~~~~~~p~i-~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~ 357 (479)
T PRK10077 279 SVFQQFVGINVVLYYAPEI-FKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAF 357 (479)
T ss_pred HHHHHHhChhHHHHHHHHH-HHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHH
Confidence 1111 1122232322 22233 2234555567788899999999999999999999999988888777665432
Q ss_pred --CChhHHHHHHHHHHHHHHHHH-HHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccc
Q psy2962 474 --LDLNTVSIVLAMMGKFFITGA-YGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYY 550 (690)
Q Consensus 474 --~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~ 550 (690)
...........++..++.+.. .+..+.+++|.+|++.|++++|+.+..+++|+++++.+.+....+....+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~------ 431 (479)
T PRK10077 358 YTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVA------ 431 (479)
T ss_pred hcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhh------
Confidence 111122222233333333332 35678999999999999999999999999999999887764110000000
Q ss_pred ccccccchhhccccCCCcchhhccccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHhh-hccCCCCCCCC
Q psy2962 551 NSSTITKKCLITYKTMPKEQITRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSL-ILPETHHKKLP 623 (690)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~lpet~~~~l~ 623 (690)
..+....|+++++++++++++.+ +.||+++++++
T Consensus 432 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 466 (479)
T PRK10077 432 ---------------------------------------HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLE 466 (479)
T ss_pred ---------------------------------------hccCccHHHHHHHHHHHHHHHHHhccccCCCCCHH
Confidence 33445677888877777777765 67899887553
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-31 Score=292.91 Aligned_cols=348 Identities=21% Similarity=0.229 Sum_probs=238.9
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHH--------HHHHHHHHHhhhhhhHHHHHHH
Q psy2962 192 DAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWT--------FTACRLIVGASTSGVFLVAYVL 263 (690)
Q Consensus 192 ~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~--------l~~~R~l~G~~~g~~~~~~~~~ 263 (690)
.++.+++..+|++++|+++||+|||+++++++++++++++++++++|++. ++++|+++|++.|+.++...++
T Consensus 63 ~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~ 142 (490)
T PRK10642 63 FSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIF 142 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHH
Confidence 58888999999999999999999999999999999999999999999875 8899999999999999999999
Q ss_pred HhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh-----------hhchHHHHHHHHHHHHHHHHHHHhcCchhHHHhc
Q psy2962 264 ALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV-----------HDWRHLDILVTLPGLIYLAYWWFIPESARWLISK 332 (690)
Q Consensus 264 i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l-----------~~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~ 332 (690)
+.|++|+++|+++.++...+..+|.++++.++..+ .+||+.|++.++++++.+++...+||+|+|...+
T Consensus 143 ~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~ 222 (490)
T PRK10642 143 VAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHV 222 (490)
T ss_pred HHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHH
Confidence 99999999999999999988888888877655432 3799999998777666555666789999986433
Q ss_pred CCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHH-----HHH
Q psy2962 333 GRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWF-----VCS 407 (690)
Q Consensus 333 ~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~-----~~~ 407 (690)
++.++..+ +. ..+.++.++++++++. ++..+.....++ ...
T Consensus 223 ~~~~~~~~-----------------------------~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 268 (490)
T PRK10642 223 DKLEQGDR-----------------------------EG---LQDGPKVSFKEIATKH--WRSLLTCIGLVIATNVTYYM 268 (490)
T ss_pred Hhhhhhcc-----------------------------cc---ccccccCCHHHHHHHh--HHHHHHHHHHHHHHHHHHHH
Confidence 22111000 00 0001122355555531 122222211111 122
Q ss_pred HHHHHHhhccCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHH-HHhcCCChhHHHHHH
Q psy2962 408 LTYYGLSWNTANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIV-SALLPLDLNTVSIVL 483 (690)
Q Consensus 408 ~~~~~~~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~-~~~~~~~~~~~~~~~ 483 (690)
...|.+.+....++.+ .........++.+++.++.+++.||+|||+.+..+.++..++.+. +...........++.
T Consensus 269 ~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (490)
T PRK10642 269 LLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAG 348 (490)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 2233444443334422 233334455667788889999999999999887776544333222 222222223333333
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCccccccccccccchhhccc
Q psy2962 484 AMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITY 563 (690)
Q Consensus 484 ~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (690)
.++.+++.+...+....+..|.+|++.|++++|+....+.+++.++|++.++.. .
T Consensus 349 ~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~------~------------------- 403 (490)
T PRK10642 349 LLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLV------E------------------- 403 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHH------H-------------------
Confidence 444455556666777788889999999999999877778888889999987621 0
Q ss_pred cCCCcchhhccccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHhhhccCCCCCCCC
Q psy2962 564 KTMPKEQITRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSLILPETHHKKLP 623 (690)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~ 623 (690)
...+...++++..+.++++.+..+++||++++..+
T Consensus 404 -------------------------~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~ 438 (490)
T PRK10642 404 -------------------------STQNLMMPAYYLMVVAVIGLITGVTMKETANRPLK 438 (490)
T ss_pred -------------------------HhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCC
Confidence 01223455556666777777777788999876554
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-31 Score=296.96 Aligned_cols=341 Identities=26% Similarity=0.377 Sum_probs=261.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHHh
Q psy2962 186 WYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLAL 265 (690)
Q Consensus 186 ~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i~ 265 (690)
.+.+++.+++.+|.++|++++|+++|++|||+.++++.++..++++++++++|+++++++|++.|+|.|+.....+.+++
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s 168 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYIS 168 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh----hchHHHHHHHHHHHHHHHHHHHhcCchhHHHhcCCHHHHHHH
Q psy2962 266 EMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH----DWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLI 341 (690)
Q Consensus 266 e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~----~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~~~~ea~~~ 341 (690)
|..|++.||...+..+.+..+|.+++..+++... +||..+.+..+++++..+..+++||||||+..+|+.+++++.
T Consensus 169 Eiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~ 248 (513)
T KOG0254|consen 169 EIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRS 248 (513)
T ss_pred hcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHH
Confidence 9999999999999999999999999988888885 699999999999999988888899999999999999999999
Q ss_pred HHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHH------HHHHHHHHhh
Q psy2962 342 IQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFV------CSLTYYGLSW 415 (690)
Q Consensus 342 l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~------~~~~~~~~~~ 415 (690)
++++...++.+...+ .+... .....+......+..+.++++ |..++..+..+..... +...||...+
T Consensus 249 l~~l~g~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~i 321 (513)
T KOG0254|consen 249 LKRLRGLSPEDVEVE-LELLK-----IKLLVEAEVAEGKASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTI 321 (513)
T ss_pred HHHHhCCCCcchHHH-HHHHH-----HHHHHhhhcccccccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHH
Confidence 999977442222211 11111 000111111112224556665 5555555544433332 2233444444
Q ss_pred ccCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcC----C------ChhHHHHHHH
Q psy2962 416 NTANLGG-NIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLP----L------DLNTVSIVLA 484 (690)
Q Consensus 416 ~~~~l~~-~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~----~------~~~~~~~~~~ 484 (690)
+...-.. +......+.+++.+++.+++.+++||+|||+.++.+.+.+.+++++++... . ...++.++..
T Consensus 322 f~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (513)
T KOG0254|consen 322 FKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFL 401 (513)
T ss_pred HHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHH
Confidence 3222222 336777788888999999999999999999999999999988888776541 1 1223344444
Q ss_pred HHHHHHHH-HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 485 MMGKFFIT-GAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTS 533 (690)
Q Consensus 485 ~l~~~~~~-~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~ 533 (690)
++...... +..++.+.+.+|.+|.+.|+.+.++...++++.+.+.....
T Consensus 402 ~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~ 451 (513)
T KOG0254|consen 402 CLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFF 451 (513)
T ss_pred HHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 43333333 34457788999999999999999999999998877654443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=345.61 Aligned_cols=378 Identities=31% Similarity=0.548 Sum_probs=284.8
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccc---cHHHHHHHHHHHHhhhhhhHHHH
Q psy2962 184 KAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAP---DFWTFTACRLIVGASTSGVFLVA 260 (690)
Q Consensus 184 ~~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~---s~~~l~~~R~l~G~~~g~~~~~~ 260 (690)
++.+.++..++.++|..+|++++|.++||+|||++++++.++..+++++.++++ +++.++++|++.|++.|+..+..
T Consensus 44 ~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~ 123 (451)
T PF00083_consen 44 SSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVS 123 (451)
T ss_pred hHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 356789999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---hh---chHHHHHHHHHHHHHHHHHHHhcCchhHHHhcCC
Q psy2962 261 YVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HD---WRHLDILVTLPGLIYLAYWWFIPESARWLISKGR 334 (690)
Q Consensus 261 ~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---~~---Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~~ 334 (690)
.+++.|..|+++|++..++.+.++.+|.+++..++... .+ ||..+++.++++++.++..+++||||||+..|+|
T Consensus 124 ~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~ 203 (451)
T PF00083_consen 124 PIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGR 203 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccc
Confidence 99999999999999999999999999999988887655 24 9999999999998888888899999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHH------HH
Q psy2962 335 NEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVC------SL 408 (690)
Q Consensus 335 ~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~------~~ 408 (690)
.+||++.++++.+.+..+ +..++.. ++.++.++.+.+++++++++..++..+..+..+... ..
T Consensus 204 ~~~A~~~l~~~~~~~~~~---~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 272 (451)
T PF00083_consen 204 DEEAEKVLRKLRGKEIED---EEIEEIK--------AEKKESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFI 272 (451)
T ss_pred cccccccccccccccccc---ccccccc--------cccccccccceeeeeccccccccccccccccccccccccccccc
Confidence 999999999864432211 1111111 011111112267888888876544444444333322 22
Q ss_pred HHHHHhhccCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHH--h-c-CCCh---hHHH
Q psy2962 409 TYYGLSWNTANLGG-NIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSA--L-L-PLDL---NTVS 480 (690)
Q Consensus 409 ~~~~~~~~~~~l~~-~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~--~-~-~~~~---~~~~ 480 (690)
.+|...+ .+..+. +......+.++..+++.+++.++.||+|||+.++.+.++++++++.+. . . .+.. .+..
T Consensus 273 ~~~~~~i-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (451)
T PF00083_consen 273 FYYSPSI-FENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILS 351 (451)
T ss_pred ccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2333222 222332 223555566777888889999999999999999998888887777664 1 1 2211 2222
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCccccccccccccchh
Q psy2962 481 IVLAMMGKFFIT-GAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKC 559 (690)
Q Consensus 481 ~~~~~l~~~~~~-~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (690)
+++..+..++.+ +..+..+.+++|++|++.|+++.|++...++++++++|.+..... .
T Consensus 352 i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~------~--------------- 410 (451)
T PF00083_consen 352 IVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLF------N--------------- 410 (451)
T ss_pred ceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccc------c---------------
Confidence 333333333333 444577789999999999999999999999999999988865410 1
Q ss_pred hccccCCCcchhhccccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHhh-hccCCCCCCCCC
Q psy2962 560 LITYKTMPKEQITRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSL-ILPETHHKKLPE 624 (690)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~lpet~~~~l~~ 624 (690)
..+....+.+++++++++.+.++ ++|||++++++|
T Consensus 411 ------------------------------~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~e 446 (451)
T PF00083_consen 411 ------------------------------NLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEE 446 (451)
T ss_pred ------------------------------cccccccchhhHHHHHHHHhheeEEEeeCCCCCHHH
Confidence 22335677788877777777665 899999998766
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=271.37 Aligned_cols=305 Identities=11% Similarity=0.036 Sum_probs=216.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
..+.|++.+.+++++++++++.|+++||+|||++++.+.+....+.+....+++++.++++|+++|++.+. .......+
T Consensus 25 ~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~-~~~~~~~~ 103 (368)
T TIGR00903 25 KEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPF-LLNAFAPA 103 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHH-HHHHHHHH
Confidence 57899999999999999999999999999999987766555555443333347999999999999999986 56666677
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHH-HHHHHhcCchhHHHhcCCHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDILVTLPGLIYL-AYWWFIPESARWLISKGRNEEAKL 340 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---~~Wr~~~~i~~i~~ll~~-~~~~~lpesp~~l~~~~~~~ea~~ 340 (690)
.|++|+++|++++++...+..+|.+++++++..+ .+||+.|++.++++++.. +.++++||+|++. ++..+
T Consensus 104 ~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~---~~~~~--- 177 (368)
T TIGR00903 104 ASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQA---AEGFG--- 177 (368)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---CCCcc---
Confidence 9999999999999999999999999999999888 389999999888876654 4556689998642 00000
Q ss_pred HHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHH-HHHHHHHhhccCC
Q psy2962 341 IIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVC-SLTYYGLSWNTAN 419 (690)
Q Consensus 341 ~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~ 419 (690)
. .+. ...+++++|+|.++...+..++..... .+..|.+.+.. .
T Consensus 178 ---------------------------~-~~~-------~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~-~ 221 (368)
T TIGR00903 178 ---------------------------F-KDA-------VKEFGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALR-P 221 (368)
T ss_pred ---------------------------h-HHH-------HHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 0 000 012567888888877666655544433 33344555543 2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHhhcCCh---hHHH-HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHH
Q psy2962 420 LGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRK---NFLC-PCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAY 495 (690)
Q Consensus 420 l~~~~~~~~~~~~l~~i~~~~~~~~l~dr~grr---~~l~-~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 495 (690)
.+.+.. ......+..+.+.+..+++.||..|| +... ....+.++.++.+....+ .+..+.+..+.+++....+
T Consensus 222 ~g~s~~-~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 298 (368)
T TIGR00903 222 AGLEDI-AGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFELN--RLALFAFIGIAGLLMLPAY 298 (368)
T ss_pred CCCChH-HHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHccc--cHHHHHHHHHHHHhhhhhH
Confidence 333322 23334444455556667888887643 3322 233334444433333222 3333445555667777777
Q ss_pred HHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 496 GAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 496 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+..+.+.+|.+|++.|+++.|+.+..+++|++++|.+.+.
T Consensus 299 ~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~ 338 (368)
T TIGR00903 299 AIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAML 338 (368)
T ss_pred HHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999999999876
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=280.64 Aligned_cols=380 Identities=24% Similarity=0.343 Sum_probs=263.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhcc---ccHHHHHHHHHHHHhhhhhhHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFA---PDFWTFTACRLIVGASTSGVFLVAY 261 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s---~s~~~l~~~R~l~G~~~g~~~~~~~ 261 (690)
..+.+++.+++.++.+++++++|+++||+|||++++++.++..++.+++.++ .+++.++++|++.|++.+...+...
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~ 149 (481)
T TIGR00879 70 SSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVP 149 (481)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHH
Confidence 5789999999999999999999999999999999999999999999988553 4566899999999999999999999
Q ss_pred HHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHH---HHh---hhchHHHHHHHHHHHHHHHHHHHhcCchhHHHhcCCH
Q psy2962 262 VLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLA---YFV---HDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRN 335 (690)
Q Consensus 262 ~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~---~~l---~~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~~~ 335 (690)
.++.|++++++|++++++.+.+..+|.++++.++ ... .+||+.|++.++..++.++..+++||+|+++..+++.
T Consensus 150 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 229 (481)
T TIGR00879 150 MYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRV 229 (481)
T ss_pred HHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCCh
Confidence 9999999999999999999999999999999998 443 3799999997777777777778899999998888887
Q ss_pred HHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCc--HHHHHHHHHHHHHHHH-----HH
Q psy2962 336 EEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHP--NLFKKSVIIFFLWFVC-----SL 408 (690)
Q Consensus 336 ~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~l~~~~~~~~~-----~~ 408 (690)
+++++.+++....+..+... .+... ........+.+.....+.++++.. ..+...+..++.++.. ..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (481)
T TIGR00879 230 EEARKSLARLRGTSGEDKEL--LDELE----LIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAI 303 (481)
T ss_pred HHHHHHHHHHhCCCCCcHHH--HHHHH----HHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeeh
Confidence 77666555443222111110 00000 000000001111111233333321 1222222222222221 12
Q ss_pred HHHHHhhccCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhc---CCCh-----h
Q psy2962 409 TYYGLSWNTANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALL---PLDL-----N 477 (690)
Q Consensus 409 ~~~~~~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~---~~~~-----~ 477 (690)
.++. ++.....+.+ .........++.+++.++.+++.||+|||+.+..++++.+++++++.+. .... .
T Consensus 304 ~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (481)
T TIGR00879 304 MYYS-PTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSG 382 (481)
T ss_pred HHHH-HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchh
Confidence 2222 2222333322 3455566677888999999999999999999988888777776666522 1110 2
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCcccccccccccc
Q psy2962 478 TVSIVLAMMGKFFIT-GAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTIT 556 (690)
Q Consensus 478 ~~~~~~~~l~~~~~~-~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~ 556 (690)
+..+....+...+.+ ...+....+..|.+|++.|+++.|+.++...+|++++|.+.+... +
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~------~------------ 444 (481)
T TIGR00879 383 NVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTML------E------------ 444 (481)
T ss_pred HHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H------------
Confidence 222222222223333 333566778899999999999999999999999999999987621 1
Q ss_pred chhhccccCCCcchhhccccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHhh-hccCCCCCCC
Q psy2962 557 KKCLITYKTMPKEQITRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSL-ILPETHHKKL 622 (690)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~lpet~~~~l 622 (690)
..+....|++.++++++++++.+ +.||++++++
T Consensus 445 ---------------------------------~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~ 478 (481)
T TIGR00879 445 ---------------------------------SIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTL 478 (481)
T ss_pred ---------------------------------hcCccceehhHHHHHHHHHHHHheecccCCCCCh
Confidence 33456678888888888877775 6788876644
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-28 Score=266.05 Aligned_cols=305 Identities=23% Similarity=0.306 Sum_probs=216.2
Q ss_pred HHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHH--------HHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 193 AFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFW--------TFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 193 s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~--------~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
++.+++..+|+++.|+++||+|||++++++.++++++++++++++++. .++++|+++|++.|+.++....++
T Consensus 71 ~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~ 150 (438)
T PRK09952 71 GVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLA 150 (438)
T ss_pred HHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHH
Confidence 456677889999999999999999999999999999999999999987 588999999999999999999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh-----------hhchHHHHHHHHHHHHHHHHHHHhcCchhHHHhcC
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV-----------HDWRHLDILVTLPGLIYLAYWWFIPESARWLISKG 333 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l-----------~~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~ 333 (690)
.|++|+++|++..+....++.+|.+++..+...+ .+||+.|++.+++.++.......+||+|+|...++
T Consensus 151 ~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~ 230 (438)
T PRK09952 151 VESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQH 230 (438)
T ss_pred HHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHh
Confidence 9999999999999999999999999887665543 37999999988877665555556799987643221
Q ss_pred CHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHH-HH-HHHHHHH
Q psy2962 334 RNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFL-WF-VCSLTYY 411 (690)
Q Consensus 334 ~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~-~~-~~~~~~~ 411 (690)
+.++. +.+......++|+++.+...+...+. .+ ......+
T Consensus 231 ~~~~~--------------------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (438)
T PRK09952 231 EQAAA--------------------------------------KKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAF 272 (438)
T ss_pred hcccc--------------------------------------cccCCHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11000 00001112245555555443322221 11 1222223
Q ss_pred HHhhccCCCCchHH---HHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhc--CCChhHHHHHHHHH
Q psy2962 412 GLSWNTANLGGNIY---LNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALL--PLDLNTVSIVLAMM 486 (690)
Q Consensus 412 ~~~~~~~~l~~~~~---~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~--~~~~~~~~~~~~~l 486 (690)
.+.+..+.++.+.. ....+.++..+++.++.++++||+|||+.+..+.++..++.+.+... .....+..+...++
T Consensus 273 ~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 352 (438)
T PRK09952 273 ALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIML 352 (438)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 33443344443322 23344566677888899999999999998887766655544333221 22223333334445
Q ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy2962 487 GKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFAR-VGGIFASYTSVL 535 (690)
Q Consensus 487 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~-lg~~i~p~i~~~ 535 (690)
.+++.+...+..+++..|.+|++.|+++.|+.+..+. +|+.++|.+.++
T Consensus 353 ~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~ 402 (438)
T PRK09952 353 ANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAA 402 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 5566677778888999999999999999999776655 899999999886
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-28 Score=251.89 Aligned_cols=348 Identities=19% Similarity=0.243 Sum_probs=279.5
Q ss_pred eeehhhhhhhhccCCCCCcchhccchhhcccccCCCccccccccceeeeCCccchhHHHHHHHHHHHHHHHHHHhhcccc
Q psy2962 134 TVSEVLMVFHRRLGDKVPSLYIDLNQTIQYSRSTQEPVLTNFVMWSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRF 213 (690)
Q Consensus 134 iv~e~~p~~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvC~~~~~~gli~s~~~lg~~ig~~~~G~lsDr~ 213 (690)
+..-++|++.+|||++ ....|++.|+|.++..+++++...+.||+
T Consensus 31 v~~gLLp~iA~dl~vs-----------------------------------~~~aG~lis~yAl~~ai~ap~l~~lt~r~ 75 (394)
T COG2814 31 VPVGLLPPIAADLGVS-----------------------------------EGAAGQLITAYALGVALGAPLLALLTGRL 75 (394)
T ss_pred HHHhchHHHHHHcCCC-----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 4445789999999988 47899999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHH
Q psy2962 214 GRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAG 293 (690)
Q Consensus 214 Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~ 293 (690)
.||++++..+.++.++.+++++++||+.++++|++.|++.|..++...++..+.+|+++|++++++...+.+++.++|.+
T Consensus 76 ~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvP 155 (394)
T COG2814 76 ERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVP 155 (394)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh---hchHHHHHHHHHHHHHHHH-HHHhcCchhHHHhcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHH
Q psy2962 294 LAYFVH---DWRHLDILVTLPGLIYLAY-WWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEE 369 (690)
Q Consensus 294 l~~~l~---~Wr~~~~i~~i~~ll~~~~-~~~lpesp~~l~~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~ 369 (690)
++.++. |||+.|++.++.+++.++. +..+| |+
T Consensus 156 LGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~------------------------------------------ 191 (394)
T COG2814 156 LGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PS------------------------------------------ 191 (394)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--Cc------------------------------------------
Confidence 999984 7999999999998887654 44567 21
Q ss_pred HHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHHHHHH-hhccCCCC---chHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 370 EKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGL-SWNTANLG---GNIYLNFIISGMVEIPAYLSSMLT 445 (690)
Q Consensus 370 ~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~l~---~~~~~~~~~~~l~~i~~~~~~~~l 445 (690)
+...+......+..+++|+|.++...+..++........|..+ ++..+..+ ....+....+|+..++|..++|++
T Consensus 192 -~~~~~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl 270 (394)
T COG2814 192 -EISGSLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRL 270 (394)
T ss_pred -cCCCCCCcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0000111122235678999999988777776666555555333 33333333 345677788899999999999999
Q ss_pred HhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHH
Q psy2962 446 LDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVG 525 (690)
Q Consensus 446 ~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg 525 (690)
.|| +.|+.+.....+.++..+.+.+.+.. .+..++...+.++.............++..| +.++.+.++.....++|
T Consensus 271 ~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~-~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p-~~~~~a~sl~~aa~nlg 347 (394)
T COG2814 271 ADR-GPRRALIAALLLLALALLALTFTGAS-PALALALLFLWGFAFSPALQGLQTRLARLAP-DAADLAGSLNVAAFNLG 347 (394)
T ss_pred ccc-cchhHHHHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHhhhhhhHHHHHhcccCC-CchHHHHHHHHHHHHHH
Confidence 999 88888888888888888877776554 4455555555666666666666677777555 56899999999999999
Q ss_pred HHHHHHHHHHccccccccCccccccccccccchhhccccCCCcchhhccccchhhhhhhhhhhhcccchhhHHHHHHHHH
Q psy2962 526 GIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSL 605 (690)
Q Consensus 526 ~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 605 (690)
..+|..++|... + ..++....++.+++.+
T Consensus 348 ia~GA~lGG~v~------~---------------------------------------------~~g~~~~~~~~a~l~~ 376 (394)
T COG2814 348 IALGAALGGLVL------D---------------------------------------------ALGYAATGWVGAALLL 376 (394)
T ss_pred HHHHHHHHHHHH------H---------------------------------------------hhchHHHHHHHHHHHH
Confidence 999999998721 2 4566777888888888
Q ss_pred HHHHHhhhcc
Q psy2962 606 TAGILSLILP 615 (690)
Q Consensus 606 ~~~~~~~~lp 615 (690)
++.++.++..
T Consensus 377 ~a~~~~~~~~ 386 (394)
T COG2814 377 LALLLALLSA 386 (394)
T ss_pred HHHHHHHHHH
Confidence 8877776443
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-28 Score=265.50 Aligned_cols=304 Identities=18% Similarity=0.157 Sum_probs=210.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHH--------HHHHHHHHHHhhhhhhHHH
Q psy2962 188 RGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFW--------TFTACRLIVGASTSGVFLV 259 (690)
Q Consensus 188 ~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~--------~l~~~R~l~G~~~g~~~~~ 259 (690)
.+.+.++.+++..+|++++|+++||+|||+++.+++++++++++++++++++. .++++|+++|++.|+.++.
T Consensus 65 ~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~ 144 (432)
T PRK10406 65 TAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGT 144 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhh
Confidence 34444555666669999999999999999999999999999999999999874 5889999999999999999
Q ss_pred HHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh-----------hhchHHHHHHHHHHHHHHHHHHHhcCchhH
Q psy2962 260 AYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV-----------HDWRHLDILVTLPGLIYLAYWWFIPESARW 328 (690)
Q Consensus 260 ~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l-----------~~Wr~~~~i~~i~~ll~~~~~~~lpesp~~ 328 (690)
..+++.|++|+++|+++.++...+...|.++++.+...+ .+||++|++.++++++.+.....+||+|++
T Consensus 145 ~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~ 224 (432)
T PRK10406 145 SATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQ 224 (432)
T ss_pred HHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 999999999999999999999888888888877665432 379999999888887766555567887653
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHH-HH-HH
Q psy2962 329 LISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFL-WF-VC 406 (690)
Q Consensus 329 l~~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~-~~-~~ 406 (690)
.. + . .++..++++++|+++.+...+...+. .. ..
T Consensus 225 ~~--------~------------------------------~------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 260 (432)
T PRK10406 225 ET--------R------------------------------A------LKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFY 260 (432)
T ss_pred HH--------h------------------------------h------hcccccHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 10 0 0 00112456677777665443333222 22 22
Q ss_pred HHHHHHHhhccCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHh-c-CCChhHHHH
Q psy2962 407 SLTYYGLSWNTANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSAL-L-PLDLNTVSI 481 (690)
Q Consensus 407 ~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~-~-~~~~~~~~~ 481 (690)
....|.+.+..+..+.+ ......+..+...++..+.|+++||++||+.+....++.++....+.. . .....+..+
T Consensus 261 ~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (432)
T PRK10406 261 TFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAF 340 (432)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 23334444444444432 233344445566777788899999999998877665544333322211 1 122222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy2962 482 VLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARV-GGIFASYTSVL 535 (690)
Q Consensus 482 ~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l-g~~i~p~i~~~ 535 (690)
.+..+..++.+...+....+.+|.+|++.|+++.|+.+..+++ ++...|++.++
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~ 395 (432)
T PRK10406 341 GLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALS 395 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHH
Confidence 2233333344444556778899999999999999999988775 34457777665
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-28 Score=264.05 Aligned_cols=317 Identities=22% Similarity=0.244 Sum_probs=225.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
+.+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.++++++++++.++++|++.|++.+..++....++
T Consensus 52 ~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~ 131 (426)
T PRK12307 52 DMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYA 131 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHHHHHHHhcCchhHHHhcCCHHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLI 341 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---~~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~~~~ea~~~ 341 (690)
.|++|+++|+++.++...+..+|.++++.+...+ .+||+.+++..++.++.+......||+++|...+.+
T Consensus 132 ~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~------- 204 (426)
T PRK12307 132 VESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLS------- 204 (426)
T ss_pred HHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhh-------
Confidence 9999999999999999999999999998887665 379999988655544433333345676554211100
Q ss_pred HHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHH----HHHHHHhhcc
Q psy2962 342 IQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCS----LTYYGLSWNT 417 (690)
Q Consensus 342 l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~~ 417 (690)
..++. . +...+.....+++++|++.++...+.....+.... ...+.+.+.
T Consensus 205 -----~~~~~------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 258 (426)
T PRK12307 205 -----GKGKH------------------S--QSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYL- 258 (426)
T ss_pred -----ccccc------------------c--ccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 00000 0 00000111245677887776654433322222111 112222222
Q ss_pred CCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHH-HHHHHH
Q psy2962 418 ANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMG-KFFITG 493 (690)
Q Consensus 418 ~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~-~~~~~~ 493 (690)
...+.+ ......+.+++.+++.++.+++.||++||+.+..+.++.++.++.+...+..... .+...+++ .+...+
T Consensus 259 ~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 337 (426)
T PRK12307 259 AGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYL-LLGACLFGLMATNVG 337 (426)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHH-HHHHHHHHHHHhccc
Confidence 223432 2344456677888999999999999999999888887776665555444332222 12122211 122222
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 494 AYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 494 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
..+....++.|.+|++.|++++|+......+|+.++|.+.++
T Consensus 338 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~ 379 (426)
T PRK12307 338 VGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATW 379 (426)
T ss_pred HhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHH
Confidence 334566778999999999999999999999999999999987
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-27 Score=256.90 Aligned_cols=336 Identities=13% Similarity=0.099 Sum_probs=241.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
..+.+++.+++.+++.+++++.|+++||+|||+++..+.++++++.++++++++++.++++|+++|++.+...+....++
T Consensus 43 ~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~ 122 (393)
T PRK09705 43 FSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVI 122 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh----hhchHHHHHHHHHHHHHHHHHHHhcC-chhHHHhcCCHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV----HDWRHLDILVTLPGLIYLAYWWFIPE-SARWLISKGRNEEAK 339 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l----~~Wr~~~~i~~i~~ll~~~~~~~lpe-sp~~l~~~~~~~ea~ 339 (690)
.++++ ++|+++++++..+..+|..+++.++..+ .+||+.+.+.++..++.++.++...+ .|+ +
T Consensus 123 ~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-- 190 (393)
T PRK09705 123 KRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREVA---------S-- 190 (393)
T ss_pred HHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc---------c--
Confidence 99996 8899999999998888888888877765 37999887766665444333322211 110 0
Q ss_pred HHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHH-HHHHHHHhhccC
Q psy2962 340 LIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVC-SLTYYGLSWNTA 418 (690)
Q Consensus 340 ~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~ 418 (690)
+ ++++...++.++++..+...+..++..+.. ....+.+.+..+
T Consensus 191 ------------------------------~------~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~ 234 (393)
T PRK09705 191 ------------------------------S------HKTTTTPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE 234 (393)
T ss_pred ------------------------------c------cCCCcCCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000011234456666655444333333222 223334444332
Q ss_pred CCCc---hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHH
Q psy2962 419 NLGG---NIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAY 495 (690)
Q Consensus 419 ~l~~---~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 495 (690)
.+. .......+.++..+++.++.+++.||++||+.+..+..+.+++.+++...+.... . ...++.+++.+..+
T Consensus 235 -~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~--~~~~l~g~g~g~~~ 310 (393)
T PRK09705 235 -IGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLP-V--LWAMVCGLGLGGAF 310 (393)
T ss_pred -cCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHH-H--HHHHHHHHhccchH
Confidence 342 2445566778888999999999999999999888887777777665554443222 1 12233455666666
Q ss_pred HHHHHHhhccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCccccccccccccchhhccccCCCcchhhcc
Q psy2962 496 GAVYIFSAEQF-PTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRY 574 (690)
Q Consensus 496 ~~~~~~~~e~~-p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (690)
+.......+.+ |++.+++..|+.+..+.+++.++|.+.++..
T Consensus 311 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~------------------------------------- 353 (393)
T PRK09705 311 PLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLR------------------------------------- 353 (393)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------
Confidence 76666666666 4678999999999999999999999998721
Q ss_pred ccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHhh-hccCCCCCCC
Q psy2962 575 GVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSL-ILPETHHKKL 622 (690)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~lpet~~~~l 622 (690)
|. ..++...|.+.++++++..++.. +.|||+++.+
T Consensus 354 -------~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 354 -------SI------SGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred -------HH------hCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 11 23456667777766666666554 7788887654
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=259.46 Aligned_cols=331 Identities=14% Similarity=0.193 Sum_probs=225.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
..+.|++.+++++++.+++++.|+++||+|||+++..++++.+++.+++++++|++.+++.|++.|++.+...+....++
T Consensus 42 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~ 121 (412)
T TIGR02332 42 ATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYL 121 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---------hhchHHHHHHHHHHHHHH-HHHHHhcCchh---HHHh
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---------HDWRHLDILVTLPGLIYL-AYWWFIPESAR---WLIS 331 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---------~~Wr~~~~i~~i~~ll~~-~~~~~lpesp~---~l~~ 331 (690)
.|++|+++|++++++++.+.++|.++++.++..+ .+||+.|++.++++++.. +.++++||+|+ |+..
T Consensus 122 ~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~ 201 (412)
T TIGR02332 122 TFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDE 201 (412)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCH
Confidence 9999999999999999999999999999998765 289999999988877654 45566799884 3221
Q ss_pred cCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHH-HHHHH
Q psy2962 332 KGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFV-CSLTY 410 (690)
Q Consensus 332 ~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~-~~~~~ 410 (690)
++++...+..+.+..+.++. + .............+++++ ++.++...+..++.... .....
T Consensus 202 -----~~~~~~~~~~~~~~~~~~~~--~----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 263 (412)
T TIGR02332 202 -----EDKKALKEMIDNDQLTLEQP--E----------GAFAHAAMPQRSMLREIF-TPAIMLYTLAYFCLTNTLSAINI 263 (412)
T ss_pred -----HHHHHHHHHHHhcccccccc--c----------cccccccccHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111111000000 0 000000000011233444 46555544444433332 23344
Q ss_pred HHHhhccC-CCCc---hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhH-HHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Q psy2962 411 YGLSWNTA-NLGG---NIYLNFIISGMVEIPAYLSSMLTLDRYGRKNF-LCPCLILSGLCLIVSALLPLDLNTVSIVLAM 485 (690)
Q Consensus 411 ~~~~~~~~-~l~~---~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~-l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 485 (690)
|.+.+..+ ..+. ..........+..+++.++.+++.||++||+. .....++.++++++. ..... ....+...+
T Consensus 264 ~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~ 341 (412)
T TIGR02332 264 WTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLA-SATDH-NLIQLLGII 341 (412)
T ss_pred HHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHH-HhcCC-HHHHHHHHH
Confidence 55555443 1222 23444566677888999999999999997764 333333444333222 22222 222222222
Q ss_pred HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 486 MGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 486 l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+..++.....+..+....|.+|++.|+++.|+.+..+++|++++|.+.+.
T Consensus 342 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~ 391 (412)
T TIGR02332 342 MASMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGI 391 (412)
T ss_pred HHHHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 22233333334455666788999999999999999999999999999876
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-27 Score=254.57 Aligned_cols=329 Identities=16% Similarity=0.074 Sum_probs=242.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
+.+.|++.+++.+++.+++++.|.++||+|||+++..+.++.+++++++++++|++.++++|+++|++.+...+....++
T Consensus 43 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i 122 (390)
T PRK03545 43 TAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLA 122 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHHHH-HHHhcCchhHHHhcCCHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDILVTLPGLIYLAY-WWFIPESARWLISKGRNEEAKL 340 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---~~Wr~~~~i~~i~~ll~~~~-~~~lpesp~~l~~~~~~~ea~~ 340 (690)
.|++|+++|++++++...+.++|.+++|+++..+ .+||+.|++.++..++..+. +..+||.|+ .+
T Consensus 123 ~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~-----~~------ 191 (390)
T PRK03545 123 IRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPS-----EH------ 191 (390)
T ss_pred HHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCC-----CC------
Confidence 9999999999999999999999999999998876 37999999998887766543 334565432 00
Q ss_pred HHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHH-HHHHHHhhccCC
Q psy2962 341 IIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCS-LTYYGLSWNTAN 419 (690)
Q Consensus 341 ~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~ 419 (690)
+....+.++++|+|.++...+..++...... ...+...+..+.
T Consensus 192 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 235 (390)
T PRK03545 192 ------------------------------------SGSLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQV 235 (390)
T ss_pred ------------------------------------cchHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000123467788877655444333332222 222333333333
Q ss_pred CCc---hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHH
Q psy2962 420 LGG---NIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYG 496 (690)
Q Consensus 420 l~~---~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 496 (690)
.+. .........++..+++.++.+++.||++||... .+..+.+++...+..... +.+...+..++.+++.....+
T Consensus 236 ~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~g~~~~~~~~ 313 (390)
T PRK03545 236 AGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAAN-SEWHLSVLSIFWGIAIMCIGL 313 (390)
T ss_pred cCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHhcchH
Confidence 332 234455666778899999999999999988654 344444444333322222 234444445555555555555
Q ss_pred HHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCccccccccccccchhhccccCCCcchhhcccc
Q psy2962 497 AVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGV 576 (690)
Q Consensus 497 ~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (690)
.......+..| +.|+.++|+.+....+|..++|.+.|... +
T Consensus 314 ~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~------~-------------------------------- 354 (390)
T PRK03545 314 AMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVS------L-------------------------------- 354 (390)
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHH------h--------------------------------
Confidence 56677778877 47899999999999999999999998732 2
Q ss_pred chhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHhhhc
Q psy2962 577 TVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSLIL 614 (690)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 614 (690)
..+....+.+.+++.+++.+.....
T Consensus 355 -------------~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
T PRK03545 355 -------------HLGLSSIGYVGAALALAALVWSILI 379 (390)
T ss_pred -------------ccChhHHHHHHHHHHHHHHHHHHHH
Confidence 5566778888888888877776543
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-28 Score=258.81 Aligned_cols=309 Identities=16% Similarity=0.123 Sum_probs=228.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
..+.|++.+++.++..+++++.|+++||+|||++++++.++.+++.++++++++++.++++|++.|++.+..++.....+
T Consensus 37 ~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 116 (377)
T TIGR00890 37 VTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTA 116 (377)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999988888899
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHHHHHH-HhcCchhHHHhcCCHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDILVTLPGLIYLAYWW-FIPESARWLISKGRNEEAKL 340 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---~~Wr~~~~i~~i~~ll~~~~~~-~lpesp~~l~~~~~~~ea~~ 340 (690)
.++++ ++|+++.++...+..+|.++++++...+ .+||+.|++.++..++..+..+ ++++.|+- +
T Consensus 117 ~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--------~--- 184 (377)
T TIGR00890 117 VKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQ--------L--- 184 (377)
T ss_pred HHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchh--------c---
Confidence 99986 6799999999999999988755544443 4799999999988777665544 44443320 0
Q ss_pred HHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHH-HHHHHHhhccCC
Q psy2962 341 IIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCS-LTYYGLSWNTAN 419 (690)
Q Consensus 341 ~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~ 419 (690)
++++ .+.+.+..+.++++|++.++...+..+...+... ...+...+ .+.
T Consensus 185 --------~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 234 (377)
T TIGR00890 185 --------IKTN---------------------IEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPY-GQS 234 (377)
T ss_pred --------cccC---------------------cccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHH-HHH
Confidence 0000 0000011134566777776655444333322221 11112222 233
Q ss_pred CCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHH
Q psy2962 420 LGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYG 496 (690)
Q Consensus 420 l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 496 (690)
++.+ ......+.++..+++.++.+++.||+|||+.+..+.++.+++.+.+.+.+....+......++.+++.+...+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 314 (377)
T TIGR00890 235 LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTIS 314 (377)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchh
Confidence 3322 3345566777888999999999999999999988888888877766665433232333334445556666666
Q ss_pred HHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 497 AVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 497 ~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
....+..|.+|++.|+++.|+.+....+|++++|.+.+.
T Consensus 315 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~ 353 (377)
T TIGR00890 315 LFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASH 353 (377)
T ss_pred ccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHH
Confidence 777889999999999999999999999999999999886
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-28 Score=248.07 Aligned_cols=324 Identities=14% Similarity=0.158 Sum_probs=251.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
..+.|++.|.+.+.+.++-++.|.++||.+.|..+.+++++.++..++++++++.+.+.++-++.|+.+|..+|.+...+
T Consensus 63 k~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i 142 (448)
T COG2271 63 KTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTI 142 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHH--HHhh---hchHHHHHHHHHHHHHHH-HHHHhcCchhHHHhcCCHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLA--YFVH---DWRHLDILVTLPGLIYLA-YWWFIPESARWLISKGRNEEA 338 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~--~~l~---~Wr~~~~i~~i~~ll~~~-~~~~lpesp~~l~~~~~~~ea 338 (690)
..|+++++||+..++++++.++|..+.+++. .++. +||..|++.++++++..+ .++.++++|+-.
T Consensus 143 ~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~--------- 213 (448)
T COG2271 143 THWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSE--------- 213 (448)
T ss_pred HHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcccc---------
Confidence 9999999999999999999999999988888 5553 899999999999888754 555577877511
Q ss_pred HHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCC-----CccchhhccCcHHHHHHHHHHHHHHH-HHHHHHH
Q psy2962 339 KLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGP-----KPSIFELFRHPNLFKKSVIIFFLWFV-CSLTYYG 412 (690)
Q Consensus 339 ~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~l~~~~~~~~-~~~~~~~ 412 (690)
+.+..++..++.. +. . +++++.+ +.-.+-+++||.+|...+...+.+.+ ..+..+.
T Consensus 214 -----------GLP~ie~~~~d~~----e~-~--~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~ 275 (448)
T COG2271 214 -----------GLPPIEEYRGDPL----EI-Y--EEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWG 275 (448)
T ss_pred -----------CCCCHHHhhcCch----hh-h--hhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhH
Confidence 1111111111100 00 0 1111111 11234578899988887777777665 4445566
Q ss_pred HhhccCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHhhc--CChhHHHH-HHHHHHHHHHHHHhcCCChhHHHHHHHHH
Q psy2962 413 LSWNTANLGG---NIYLNFIISGMVEIPAYLSSMLTLDRY--GRKNFLCP-CLILSGLCLIVSALLPLDLNTVSIVLAMM 486 (690)
Q Consensus 413 ~~~~~~~l~~---~~~~~~~~~~l~~i~~~~~~~~l~dr~--grr~~l~~-~~~~~~i~~l~~~~~~~~~~~~~~~~~~l 486 (690)
+.+..+..+. ++.....+.-.++++|.+++|+++||+ |||..+.+ .++...++.+.+...++.+.++..++..+
T Consensus 276 p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~ 355 (448)
T COG2271 276 PLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFI 355 (448)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHH
Confidence 6666555553 355666777788899999999999995 67766644 44444555555555566656677777777
Q ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy2962 487 GKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARV-GGIFASYTSVL 535 (690)
Q Consensus 487 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l-g~~i~p~i~~~ 535 (690)
.++...+...++-..+.|..|++..|++.|+...++.+ |++.+....++
T Consensus 356 iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~ 405 (448)
T COG2271 356 IGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGY 405 (448)
T ss_pred HHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCccee
Confidence 77888777788889999999999999999999999998 77777777766
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-30 Score=262.89 Aligned_cols=378 Identities=22% Similarity=0.320 Sum_probs=275.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhcccc-------HHHHHHHHHHHHhhhhhhH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPD-------FWTFTACRLIVGASTSGVF 257 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s-------~~~l~~~R~l~G~~~g~~~ 257 (690)
+...+.+..+..+|.++|++++|+++||+|||+++...+++.++++++++++.. .+++.+.|++.|+|.|+-+
T Consensus 83 s~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDY 162 (538)
T KOG0252|consen 83 SGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDY 162 (538)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCC
Confidence 456788899999999999999999999999999999999999999998887532 5678899999999999999
Q ss_pred HHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh------------------hchHHHHHHHHHHHHHHHHH
Q psy2962 258 LVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH------------------DWRHLDILVTLPGLIYLAYW 319 (690)
Q Consensus 258 ~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~------------------~Wr~~~~i~~i~~ll~~~~~ 319 (690)
|.+.++.+|....+.||...+...+....|.+.|.+++..+. =||..+.+.++++++.+...
T Consensus 163 PlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~R 242 (538)
T KOG0252|consen 163 PLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFR 242 (538)
T ss_pred cchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999988888888888877776651 19999999999999999999
Q ss_pred HHhcCchhHHHh-cCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCc---cchhhccCcHHHHH
Q psy2962 320 WFIPESARWLIS-KGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKP---SIFELFRHPNLFKK 395 (690)
Q Consensus 320 ~~lpesp~~l~~-~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~ 395 (690)
+.+|||+||-.. .++.+.|. +..++....+ +++. +..+...+.++. .+...+..+ .-+.
T Consensus 243 l~M~Et~~Y~al~~~~~~~a~-------~d~~k~~~~~-~~~~--------~~~~~~~~~~~~~~~~F~~~f~~~-hg~~ 305 (538)
T KOG0252|consen 243 LKMPETARYTALVSKKLKQAA-------GDMKKVLSVD-IEAE--------STAESDVPPPSNSFGLFSRLFLRW-HGKH 305 (538)
T ss_pred hcCCcchhHHHHhhcCHhhhh-------hccccccccc-cchh--------hccccCCCCcccccchHHHHHHHH-HHHH
Confidence 999999997522 22323322 1111111110 0000 000111111111 233333333 3467
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCC----C----chHH--------HHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHH
Q psy2962 396 SVIIFFLWFVCSLTYYGLSWNTANL----G----GNIY--------LNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCL 459 (690)
Q Consensus 396 ~l~~~~~~~~~~~~~~~~~~~~~~l----~----~~~~--------~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~ 459 (690)
++..+..||...+.+|...++.+.. + .+.+ .+..+.....+||..+...++|++|||+..+.++
T Consensus 306 Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF 385 (538)
T KOG0252|consen 306 LLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGF 385 (538)
T ss_pred HHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhH
Confidence 8888999999888888876554322 1 1111 2233444455677778888899999999999999
Q ss_pred HHHHHHHHHHHhcCCCh--hHHHHHHHHHHH-HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy2962 460 ILSGLCLIVSALLPLDL--NTVSIVLAMMGK-FFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLE 536 (690)
Q Consensus 460 ~~~~i~~l~~~~~~~~~--~~~~~~~~~l~~-~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~ 536 (690)
+++.+..+.++...+.. .....++..+.. ++..+-......+.+|.+|++.|+++.|+...++.+|++++.+.....
T Consensus 386 ~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~ 465 (538)
T KOG0252|consen 386 FIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYL 465 (538)
T ss_pred HHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHh
Confidence 99999988887764421 111222222222 333344457788999999999999999999999999999999888762
Q ss_pred cccccccCccccccccccccchhhccccCCCcchhhccccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHhhhccC
Q psy2962 537 AFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSLILPE 616 (690)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpe 616 (690)
. . ++ +.+ ..+....+++++++++++.+..+++||
T Consensus 466 t------~------------~~----yp~------------------------~~g~~~v~~i~~~~~~~gi~~T~l~pE 499 (538)
T KOG0252|consen 466 T------D------------HN----YPP------------------------NIGVRNVFIILAGCMLLGILFTLLIPE 499 (538)
T ss_pred h------h------------cc----CCc------------------------cccchHHHHHHHHHHHHhHheeEEeec
Confidence 1 0 00 000 445678999999999999999999999
Q ss_pred CCCCCCCCc
Q psy2962 617 THHKKLPES 625 (690)
Q Consensus 617 t~~~~l~~~ 625 (690)
|+++.++|.
T Consensus 500 tk~~~leei 508 (538)
T KOG0252|consen 500 TKGKSLEEI 508 (538)
T ss_pred ccccCHHHh
Confidence 999988763
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=262.88 Aligned_cols=328 Identities=14% Similarity=0.081 Sum_probs=222.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhc-----cccHHHHHHHHHHHHhhhhhhHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAF-----APDFWTFTACRLIVGASTSGVFLV 259 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~-----s~s~~~l~~~R~l~G~~~g~~~~~ 259 (690)
..+.|++.+++++++.+++++.|+++||+|||+++.++.++++++.++.++ +++++.++++|++.|++.+...+.
T Consensus 63 ~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~ 142 (467)
T PRK09556 63 TTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPC 142 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchH
Confidence 578999999999999999999999999999999998888887777666554 689999999999999999999999
Q ss_pred HHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh------hhchHHHHHHHHHHHHHHHHH-HHhcCchhHHHhc
Q psy2962 260 AYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV------HDWRHLDILVTLPGLIYLAYW-WFIPESARWLISK 332 (690)
Q Consensus 260 ~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l------~~Wr~~~~i~~i~~ll~~~~~-~~lpesp~~l~~~ 332 (690)
...++.||+|+++|+++++++..+.++|.++++.++.++ .+||..|.+.++++++..+.. ++++++|+..
T Consensus 143 ~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~--- 219 (467)
T PRK09556 143 SYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEEL--- 219 (467)
T ss_pred HHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhc---
Confidence 999999999999999999999999999999988877543 259999988888877665444 4456666421
Q ss_pred CCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCC-Cccc-hhhccCcHHHHHHHHHHHHHHHH-HHH
Q psy2962 333 GRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGP-KPSI-FELFRHPNLFKKSVIIFFLWFVC-SLT 409 (690)
Q Consensus 333 ~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~l~~~~~~~~~~l~~~~~~~~~-~~~ 409 (690)
+..++ ++.. ++. ... + ++...+++.. ...+ +.++|+|.++...+..++..... ...
T Consensus 220 ~~~~~-~~~~------~~~-~~~------------~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 278 (467)
T PRK09556 220 GWGKA-EEIF------GEP-ISE------------E-DKETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGID 278 (467)
T ss_pred CCCCh-hhcc------cCc-cch------------h-hhccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0000 000 000 0 0000000000 0011 23678888877666555444332 344
Q ss_pred HHHHhhccCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHH
Q psy2962 410 YYGLSWNTANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMM 486 (690)
Q Consensus 410 ~~~~~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l 486 (690)
++.+.+..+..+.+ .........++.+++.++.|+++||++||+.+.....+..++...+.+....+.+...+..++
T Consensus 279 ~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (467)
T PRK09556 279 NWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFA 358 (467)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 45555655555543 334445566778899999999999999988766554443333222222222223333233333
Q ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHc
Q psy2962 487 GKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARV-GGIFASYTSVLE 536 (690)
Q Consensus 487 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l-g~~i~p~i~~~~ 536 (690)
.+++.............|.+|++.|+++.|+.+..+.+ |++++|.+.|.+
T Consensus 359 ~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i 409 (467)
T PRK09556 359 LGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMI 409 (467)
T ss_pred HHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHH
Confidence 33333333333446677999999999999999999997 779999999873
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=252.91 Aligned_cols=307 Identities=21% Similarity=0.264 Sum_probs=227.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
+.+.+++.+++.++..+++++.|+++||+|||+++..+.++..++.++++++++++.+++.|++.|++.+...+....++
T Consensus 49 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~ 128 (406)
T PRK11551 49 VAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALT 128 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHH-HHHHHhcCchhHHHhcCCHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDILVTLPGLIYL-AYWWFIPESARWLISKGRNEEAKL 340 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---~~Wr~~~~i~~i~~ll~~-~~~~~lpesp~~l~~~~~~~ea~~ 340 (690)
.|++++++|++++++...+..+|.++++.++..+ .+||+.+++.++..++.. +...++||+|++...+.+.++.++
T Consensus 129 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 208 (406)
T PRK11551 129 SEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAP 208 (406)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhh
Confidence 9999999999999999999999999999988766 369999998877655554 344567998765322111000000
Q ss_pred HHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccC---cHHHHHHHHHHHHHHH-HHHHHHHHhhc
Q psy2962 341 IIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRH---PNLFKKSVIIFFLWFV-CSLTYYGLSWN 416 (690)
Q Consensus 341 ~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~l~~~~~~~~-~~~~~~~~~~~ 416 (690)
....+++. +..+...+..+..... .....+.+.+.
T Consensus 209 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 247 (406)
T PRK11551 209 -----------------------------------------VLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLL 247 (406)
T ss_pred -----------------------------------------hHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00011111 1111111111111111 11122222222
Q ss_pred cCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Q psy2962 417 TANLGG---NIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITG 493 (690)
Q Consensus 417 ~~~l~~---~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 493 (690)
...+. .........++..+++.++.+++.||+|||+.+..+.+..+++++.+...++ .+...+..++.+++..+
T Consensus 248 -~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~ 324 (406)
T PRK11551 248 -VGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPS--FAGMLLAGFAAGLFVVG 324 (406)
T ss_pred -HhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCc--HHHHHHHHHHHHHHHHh
Confidence 22332 3445566667888999999999999999999888776666666555554432 33344445555666667
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 494 AYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 494 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
..+....+..|.+|++.|+++.|+.+....+|++++|.+.+.
T Consensus 325 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~ 366 (406)
T PRK11551 325 GQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQ 366 (406)
T ss_pred HHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhh
Confidence 778888999999999999999999999999999999999987
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-27 Score=257.25 Aligned_cols=326 Identities=13% Similarity=0.119 Sum_probs=219.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
..+.|++.+++.++.++++++.|+++||+|||+++.++.++.+++.++++++++++.+++.|++.|++.|..++....++
T Consensus 57 ~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~ 136 (434)
T PRK11663 57 RSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLL 136 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHH-HHHHHhcCchhHHHhcCCHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDILVTLPGLIYL-AYWWFIPESARWLISKGRNEEAKL 340 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---~~Wr~~~~i~~i~~ll~~-~~~~~lpesp~~l~~~~~~~ea~~ 340 (690)
.|++++++|++++++.+.+..+|.++++.++..+ .+||+.|++.+++.++.. +..++++|+|++...+...++.++
T Consensus 137 ~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 216 (434)
T PRK11663 137 TAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHD 216 (434)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccccc
Confidence 9999999999999999999999999999888776 379999999888766554 445567888754210000000000
Q ss_pred HHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCcc-c-hhhccCcHHHHHHHHHHHHHHHH-HHHHHHHhhcc
Q psy2962 341 IIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPS-I-FELFRHPNLFKKSVIIFFLWFVC-SLTYYGLSWNT 417 (690)
Q Consensus 341 ~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~l~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~ 417 (690)
. . +. .++....+..... + ..++|++.++...+..++..+.. ....+.+.+..
T Consensus 217 -------------------~-~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~ 271 (434)
T PRK11663 217 -------------------A-L----EL-AQQQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMS 271 (434)
T ss_pred -------------------c-c----cc-chhccccCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 00 0000000000011 1 12556676665554443333322 23334444544
Q ss_pred CCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhc--CChhHH-HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q psy2962 418 ANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRY--GRKNFL-CPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFI 491 (690)
Q Consensus 418 ~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~--grr~~l-~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~ 491 (690)
+..+.+ .........+..+++.++.+++.||+ ++|+.. ....+...+....+...+...........+..+++.
T Consensus 272 ~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 351 (434)
T PRK11663 272 ETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFV 351 (434)
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHH
Confidence 444533 33445566778899999999999998 333332 222222222222222223222222222222222222
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 492 TGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 492 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
............|.+|++.|+++.|+.++...+|++++|.+.++
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~ 395 (434)
T PRK11663 352 FGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAK 395 (434)
T ss_pred hhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHH
Confidence 22233445677899999999999999999999999999999887
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-26 Score=250.21 Aligned_cols=328 Identities=21% Similarity=0.287 Sum_probs=230.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
+.+.+++.+++.++.++++++.|+++||+|||+++.++.++.+++.++++++++++.++++|++.|++.+...+....++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 107 (399)
T TIGR00893 28 AAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIV 107 (399)
T ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHHHHH-HHhcCchhHHHhcCCHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDILVTLPGLIYLAYW-WFIPESARWLISKGRNEEAKL 340 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---~~Wr~~~~i~~i~~ll~~~~~-~~lpesp~~l~~~~~~~ea~~ 340 (690)
.|++|+++|++++++...+..+|.++++.++..+ .+||+.|++.++..++..+.. ++.||+|+.. +...++.++
T Consensus 108 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 185 (399)
T TIGR00893 108 ASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKA--KWLTEEEKY 185 (399)
T ss_pred HHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCcc--ccCCHHHHh
Confidence 9999999999999999999999999999998875 379999999888877665444 3456654310 000111100
Q ss_pred HHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHHH-HHHhhccCC
Q psy2962 341 IIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTY-YGLSWNTAN 419 (690)
Q Consensus 341 ~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~ 419 (690)
...+ .... + .+.+.+.+......++++|+|.++...+..++......... +...+..+.
T Consensus 186 ~~~~---------------~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (399)
T TIGR00893 186 IVVG---------------GLLA----E-QQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQE 245 (399)
T ss_pred hcch---------------hhcc----c-cccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 0000 0000 0 00011112233456778888887776666555554433333 333343344
Q ss_pred CCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChh--HHHHHH--HHHHH-HHHHHHhcC-CChhHHHHHHHHHHHHH
Q psy2962 420 LGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKN--FLCPCL--ILSGL-CLIVSALLP-LDLNTVSIVLAMMGKFF 490 (690)
Q Consensus 420 l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~--~l~~~~--~~~~i-~~l~~~~~~-~~~~~~~~~~~~l~~~~ 490 (690)
.+.+ ........++..+++.++.+++.||++||+ ...... .+..+ ..+...... ....+..+....++.++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (399)
T TIGR00893 246 RGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALALVALGFFG 325 (399)
T ss_pred hcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhc
Confidence 4432 344556667778899999999999999985 111111 11111 111111111 11223333333333333
Q ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 491 ITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 491 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
. +..+..+.+..|.+|++.|+++.|+.+.+..+|++++|.+.+.
T Consensus 326 ~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~ 369 (399)
T TIGR00893 326 L-GAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGA 369 (399)
T ss_pred h-hhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhh
Confidence 3 3678889999999999999999999999999999999999987
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-26 Score=245.76 Aligned_cols=336 Identities=17% Similarity=0.145 Sum_probs=237.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhcc--------ccHHHHHHHHHHHHhhhhhh
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFA--------PDFWTFTACRLIVGASTSGV 256 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s--------~s~~~l~~~R~l~G~~~g~~ 256 (690)
..+.|++.+++.++.++++++.|+++||+|||++++.+.++.+++++.++++ .+++.+++.|+++|++.+..
T Consensus 50 ~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 129 (399)
T PRK05122 50 AFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLA 129 (399)
T ss_pred HHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhh
Confidence 5789999999999999999999999999999999999999888877665543 25678999999999999999
Q ss_pred HHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHHHHHHHhcCchhHHHhcC
Q psy2962 257 FLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDILVTLPGLIYLAYWWFIPESARWLISKG 333 (690)
Q Consensus 257 ~~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---~~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~ 333 (690)
.+....++.|++++++|++++++...+..+|.++++.++..+ .+||+.+++.++..++..+.....|++++ +
T Consensus 130 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~- 204 (399)
T PRK05122 130 GTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLARPRPAVPP----V- 204 (399)
T ss_pred cchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCCCC----C-
Confidence 999999999999999999999999999999999999998776 37999888766655443333222232210 0
Q ss_pred CHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHH-HHHHH
Q psy2962 334 RNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCS-LTYYG 412 (690)
Q Consensus 334 ~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~-~~~~~ 412 (690)
+ +++.++++.+|. .+.......+..+... ...+.
T Consensus 205 ~-------------------------------------------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 239 (399)
T PRK05122 205 K-------------------------------------------GERLPFRRVLGR--VWPYGMGLALASIGFGTIATFI 239 (399)
T ss_pred C-------------------------------------------ccchhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 0 000011122221 1111111111111111 11122
Q ss_pred HhhccCCCC-chHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q psy2962 413 LSWNTANLG-GNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFI 491 (690)
Q Consensus 413 ~~~~~~~l~-~~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~ 491 (690)
..+..+ .+ .+........++..+++.++.+++.||+++|+.+..+.++.+++.+++...++ .+..++..++.+++.
T Consensus 240 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~G~~~ 316 (399)
T PRK05122 240 TLYYAA-RGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPS--PWMALIGAALTGFGF 316 (399)
T ss_pred HHHHHH-cccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHhH
Confidence 222211 12 22334445667778889999999999999999988888777777766655432 344445556666777
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCccccccccccccchhhccccCCCcchh
Q psy2962 492 TGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQI 571 (690)
Q Consensus 492 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (690)
+..++.......|..|++.|+++.|+.+....+|..++|.+.+... +
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~------~--------------------------- 363 (399)
T PRK05122 317 SLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVA------S--------------------------- 363 (399)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H---------------------------
Confidence 7777777777889999999999999999999999999888887621 1
Q ss_pred hccccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHhhhccCCCCCCCCC
Q psy2962 572 TRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSLILPETHHKKLPE 624 (690)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~ 624 (690)
..++...+++.+++++++.++.++++++++++.||
T Consensus 364 ------------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (399)
T PRK05122 364 ------------------WFGYPSIFLAAALAALLGLALTWLLYRRAPRAVPE 398 (399)
T ss_pred ------------------HcCHHHHHHHHHHHHHHHHHHHHHhcccccccCCC
Confidence 34567788888888888877777777766655554
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-26 Score=247.97 Aligned_cols=331 Identities=18% Similarity=0.223 Sum_probs=228.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.++++++++++.+++.|++.|++.+...+...+++
T Consensus 46 ~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i 125 (405)
T TIGR00891 46 TVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYV 125 (405)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh---h--chHHHHHHHHHHHHHHHHHHHhcCchhHHHhcCCHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH---D--WRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAK 339 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~---~--Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~~~~ea~ 339 (690)
.|++++++|+++.++...+..+|.++++.++..+. + ||+.+++.+++.++.++....+||++++...+.+.++.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (405)
T TIGR00891 126 IESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVR 205 (405)
T ss_pred HHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhh
Confidence 99999999999999999999999999999887762 3 999999877777666666677899887643322221111
Q ss_pred HHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCc-H-HHHHHHHHHHHHH-HHHHHHHHHhhc
Q psy2962 340 LIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHP-N-LFKKSVIIFFLWF-VCSLTYYGLSWN 416 (690)
Q Consensus 340 ~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~~l~~~~~~~-~~~~~~~~~~~~ 416 (690)
+..++..+ .+. . .+. ..+......++..+.+ . +....+...+..+ ......+.+.+.
T Consensus 206 ~~~~~~~~---~~~---~------------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (405)
T TIGR00891 206 TMVDILYG---GEH---R------------IAN--IVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYL 265 (405)
T ss_pred hHHHHHhc---cch---h------------hhh--hhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 11111100 000 0 000 0000000011111111 0 1111111111111 111122223333
Q ss_pred cCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Q psy2962 417 TANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITG 493 (690)
Q Consensus 417 ~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 493 (690)
.+..+.+ ........+++.+++.++.+++.||+|||+.+..+.++.++..+...... ...+...+..++.+++...
T Consensus 266 ~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 344 (405)
T TIGR00891 266 KADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIG-ANVAVLGLGLFFQQMLVQG 344 (405)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHcc
Confidence 3334432 33445566788899999999999999999988877766544433333222 2233333333444455556
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy2962 494 AYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLE 536 (690)
Q Consensus 494 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~ 536 (690)
..+....+..|.+|++.|++++|+.+.+..+|+.++|.+.|..
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l 387 (405)
T TIGR00891 345 IWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALL 387 (405)
T ss_pred chhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 6677788899999999999999999999999999999999873
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=252.27 Aligned_cols=348 Identities=14% Similarity=0.024 Sum_probs=250.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhh-----ccccHHHHHHHHHHHHhhhhhhHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAA-----FAPDFWTFTACRLIVGASTSGVFLV 259 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~-----~s~s~~~l~~~R~l~G~~~g~~~~~ 259 (690)
+.+.|++.+.+.++..+++++.|+++||+|||++++.+.++.+++.++.+ ..++++.+++.|++.|++.+...++
T Consensus 51 ~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 130 (417)
T PRK10489 51 TLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTA 130 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999988887777665543 2578899999999999999988899
Q ss_pred HHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHHHHHHHhcCchhHHHhcCCHH
Q psy2962 260 AYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNE 336 (690)
Q Consensus 260 ~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---~~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~~~~ 336 (690)
...++.|++++++|+++.++......+|..+++.+++.+ .+|++.+++.++..++..+..+.+||+++.. +.+ +
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~-~ 207 (417)
T PRK10489 131 LLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPPPP--QPR-E 207 (417)
T ss_pred HhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCC--ccc-c
Confidence 999999999999999999999999999999999999876 3699999988877776666666777654310 000 0
Q ss_pred HHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2962 337 EAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWN 416 (690)
Q Consensus 337 ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 416 (690)
+ . . ++....++.++++|.++...+..++.........+.+.+.
T Consensus 208 ~------------------------------~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 250 (417)
T PRK10489 208 H------------------------------P-L------RSLLAGFRFLLASPVVGGIALLGGLLTMASAVRVLYPALA 250 (417)
T ss_pred c------------------------------c-h------HHHHHHHHHHHcChHHHHHHHHHHHHHHHHhHHHhhHHHH
Confidence 0 0 0 0001123456677766655444333222222223333343
Q ss_pred cCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Q psy2962 417 TANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITG 493 (690)
Q Consensus 417 ~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 493 (690)
.+.++.+ ........+++.+++.++.+++.||.++++.+..+.++.+++.+++.+.+ +.+...+..++.+++.+.
T Consensus 251 ~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~ 328 (417)
T PRK10489 251 DEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMP--MWILAVLCLALFGYLSAI 328 (417)
T ss_pred HhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHHHHH
Confidence 3334433 33445566677888999999999997777777777777766665554433 233344445555566666
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCccccccccccccchhhccccCCCcchhhc
Q psy2962 494 AYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITR 573 (690)
Q Consensus 494 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (690)
..+...++..|..|++.|+++.|+.+....+|..++|.+.|+.. +
T Consensus 329 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~------~----------------------------- 373 (417)
T PRK10489 329 SSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLG------A----------------------------- 373 (417)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHH------H-----------------------------
Confidence 66677789999999999999999999999999999999998731 1
Q ss_pred cccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHh-hhccCCCCCCCCCc
Q psy2962 574 YGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILS-LILPETHHKKLPES 625 (690)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~lpet~~~~l~~~ 625 (690)
..+....+++.+++.++.+++. ..+|++|+++++|.
T Consensus 374 ----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (417)
T PRK10489 374 ----------------MMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPP 410 (417)
T ss_pred ----------------HhchhhHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 3445566666666655554444 57799888776663
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8e-26 Score=249.31 Aligned_cols=327 Identities=14% Similarity=0.093 Sum_probs=215.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhcc----ccHHHHHHHHHHHHhhhhhhHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFA----PDFWTFTACRLIVGASTSGVFLVA 260 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s----~s~~~l~~~R~l~G~~~g~~~~~~ 260 (690)
+.+.+++.++++++.+++++++|+++||+|||++++++.++.+++.++++++ .+++.+++.|++.|++.+..++..
T Consensus 62 ~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~ 141 (452)
T PRK11273 62 RGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC 141 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHH
Confidence 5789999999999999999999999999999999999999999999988875 378889999999999999988888
Q ss_pred HHHHhhhcCCCcchhhhhHHHHHHHHHHHH-HHHHHHH---hhhchHHHHHHHHHHHHH-HHHHHHhcCchhHHHhcCCH
Q psy2962 261 YVLALEMVGPSKRIIAGTVIHMFFSIGFLL-IAGLAYF---VHDWRHLDILVTLPGLIY-LAYWWFIPESARWLISKGRN 335 (690)
Q Consensus 261 ~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l-~~~l~~~---l~~Wr~~~~i~~i~~ll~-~~~~~~lpesp~~l~~~~~~ 335 (690)
...+.|++|+++|++++++++.+..+|..+ +++++.. ..+||+.|++.+++.++. ++..+++||+|+....+ +.
T Consensus 142 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~-~~ 220 (452)
T PRK11273 142 GRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLP-PI 220 (452)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCC-Ch
Confidence 888999999999999999999999998644 5544322 248999999988876665 45556678887532111 11
Q ss_pred HHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccc-hhhccCcHHHHHHHHHHHHHHH-HHHHHHHH
Q psy2962 336 EEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSI-FELFRHPNLFKKSVIIFFLWFV-CSLTYYGL 413 (690)
Q Consensus 336 ~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~l~~~~~~~~-~~~~~~~~ 413 (690)
++.++ +. +++ . ...+.++...+..+ ..++|++.++...+..++.... .....|.+
T Consensus 221 ~~~~~---------~~--~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P 277 (452)
T PRK11273 221 EEYKN---------DY--PDD-Y-----------NEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSP 277 (452)
T ss_pred hhhhh---------cc--ccc-c-----------ccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11000 00 000 0 00000000000111 2366788877766665555443 33444555
Q ss_pred hhccCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHhhc--CChhHH-HHHHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q psy2962 414 SWNTANLGG---NIYLNFIISGMVEIPAYLSSMLTLDRY--GRKNFL-CPCLILSGLCLIVSALLPLDLNTVSIVLAMMG 487 (690)
Q Consensus 414 ~~~~~~l~~---~~~~~~~~~~l~~i~~~~~~~~l~dr~--grr~~l-~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~ 487 (690)
.+..+..+. .......+.++..+++.++.|+++||+ +||... .....+..++.+.+...+....+..++..++.
T Consensus 278 ~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (452)
T PRK11273 278 TYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTVDMACMIVI 357 (452)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHH
Confidence 555544442 233445566677888999999999999 555432 22223333333333232222232222323333
Q ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q psy2962 488 KFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIF-ASYTSVL 535 (690)
Q Consensus 488 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i-~p~i~~~ 535 (690)
+.+..........++.|.+|++.|+++.|+.+....+|+.+ +|.+.+.
T Consensus 358 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~ 406 (452)
T PRK11273 358 GFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 406 (452)
T ss_pred HHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHH
Confidence 33333333344556789999999999999999999998765 7888876
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=251.82 Aligned_cols=345 Identities=18% Similarity=0.249 Sum_probs=221.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
..+.+++.+.+.++.++++++.|+++||+|||++++.+.++.+++.++.+++++++.++++|++.|++.+..++....++
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~ 133 (496)
T PRK03893 54 TVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYV 133 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHHhcCchhHHHhcCCHHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLI 341 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~~~~ea~~~ 341 (690)
.|++++++|+++.++...+..+|.++++.++..+. +||+.|++..++.++.++....+||++++...+++.++.++.
T Consensus 134 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 213 (496)
T PRK03893 134 IESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTM 213 (496)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhH
Confidence 99999999999999999999999999999888773 799999886655555444555678877653322211111111
Q ss_pred HHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchh--------------hc-cCcHHHHHHHHHHHHHHH-
Q psy2962 342 IQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFE--------------LF-RHPNLFKKSVIIFFLWFV- 405 (690)
Q Consensus 342 l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------l~-~~~~~~~~~l~~~~~~~~- 405 (690)
.+...+.+. ........... .. .-...-.......+.- .. ..+..+..........+.
T Consensus 214 ~~~~~~~~~-~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (496)
T PRK03893 214 VDILYRGEH-RIINILLTLAA----AA-ALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFA 287 (496)
T ss_pred HHHHhcchh-HHHHHHHHHHH----HH-HHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 110000000 00000000000 00 0000000000000000 00 000000000000000000
Q ss_pred --H--HHHHHHHhhccCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhH
Q psy2962 406 --C--SLTYYGLSWNTANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNT 478 (690)
Q Consensus 406 --~--~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~ 478 (690)
. ....+.+.+....++.+ .........++.+++.++.+++.||+|||+.+..+.++.++..+.+........+
T Consensus 288 ~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (496)
T PRK03893 288 FLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVW 367 (496)
T ss_pred HhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHH
Confidence 0 11122333333344433 3455566677888999999999999999998887776666555444433333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 479 VSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 479 ~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
......++.++...+..+....+..|.+|++.|++++|+.+....+|+.++|.+.+.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~ 424 (496)
T PRK03893 368 VLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGAL 424 (496)
T ss_pred HHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHH
Confidence 222222222222333345667788999999999999999999999999999999887
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-26 Score=251.61 Aligned_cols=340 Identities=14% Similarity=0.073 Sum_probs=228.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
..+.+++.+++.+++.+++++.|+++||+|||+++..+.++.+++.++++++++++.++++|++.|++.+.. .....++
T Consensus 70 ~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~-~~~~~~i 148 (476)
T PLN00028 70 KSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATF-VSCQYWM 148 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhh-HHHHHHH
Confidence 567889999999999999999999999999999999999999999999999999999999999999998865 4456788
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh------------hhchHHHHHHHHHHHHHHHHHHHhcC-chhHHHh
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV------------HDWRHLDILVTLPGLIYLAYWWFIPE-SARWLIS 331 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l------------~~Wr~~~~i~~i~~ll~~~~~~~lpe-sp~~l~~ 331 (690)
.|++|+++|++++++......+|..+++.+...+ .+||+.|++.+++.++..+..+++++ .|+
T Consensus 149 ~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~---- 224 (476)
T PLN00028 149 STMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD---- 224 (476)
T ss_pred HHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC----
Confidence 9999999999999998766666666554443322 27999999999988777665555543 331
Q ss_pred cCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHH-HHHH
Q psy2962 332 KGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVC-SLTY 410 (690)
Q Consensus 332 ~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~-~~~~ 410 (690)
++.++.++ ++ +.++......+++.+++++.+...+..+..+... ....
T Consensus 225 -~~~~~~~~--------~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (476)
T PLN00028 225 -GNYRELKK--------SG----------------------TMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDN 273 (476)
T ss_pred -CchhhHHh--------cC----------------------ccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHh
Confidence 11111000 00 0000000123455677777665544433332221 1222
Q ss_pred HHHhhccCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCCh-------hHHHHHHHHHHHHHHHHHhcCCChhHHH
Q psy2962 411 YGLSWNTANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRK-------NFLCPCLILSGLCLIVSALLPLDLNTVS 480 (690)
Q Consensus 411 ~~~~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr-------~~l~~~~~~~~i~~l~~~~~~~~~~~~~ 480 (690)
+.+.+..+..+.+ ......+.+++.+++.+++|+++||++|| .......++.++.++++... ...+..
T Consensus 274 ~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~--~~~~~~ 351 (476)
T PLN00028 274 IIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRA--NSLGAA 351 (476)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhccc--chHHHH
Confidence 3333433334433 34455566788899999999999999865 22223333333333332222 223333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCccccccccccccchhh
Q psy2962 481 IVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCL 560 (690)
Q Consensus 481 ~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (690)
++..++.+++.....+..+.+..++.| +.++++.|+.+..+.+|++++|.+.+. .
T Consensus 352 ~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~~--------~---------------- 406 (476)
T PLN00028 352 IVVMILFSIFVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFFT--------G---------------- 406 (476)
T ss_pred HHHHHHHHHHHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHHh--------c----------------
Confidence 444445555565666667777777765 679999999999999999999987654 1
Q ss_pred ccccCCCcchhhccccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHhhhcc
Q psy2962 561 ITYKTMPKEQITRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSLILP 615 (690)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lp 615 (690)
...++...|++++++.++++++.++++
T Consensus 407 ----------------------------~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 407 ----------------------------SSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred ----------------------------CCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 033466788888988888888877664
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=242.32 Aligned_cols=335 Identities=23% Similarity=0.305 Sum_probs=236.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
..+.+++.+++.++.++++++.|+++||+|||++++.+.++.+++.++..++++++.+++.|++.|++.+...+...+++
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 130 (398)
T TIGR00895 51 PVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALV 130 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHH-HHHHHHhcCchhHHHhcCCHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDILVTLPGLIY-LAYWWFIPESARWLISKGRNEEAKL 340 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---~~Wr~~~~i~~i~~ll~-~~~~~~lpesp~~l~~~~~~~ea~~ 340 (690)
.|++|+++|++++++...+..+|..+++.++..+ .+||+.+++.++..++. ++..+++||++++...+ +.+++++
T Consensus 131 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 209 (398)
T TIGR00895 131 SEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRR 209 (398)
T ss_pred HHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHH
Confidence 9999999999999999999999999999998776 37999999886554444 45566789998876555 4455555
Q ss_pred HHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHH----HHHHHHHHHHhhc
Q psy2962 341 IIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLW----FVCSLTYYGLSWN 416 (690)
Q Consensus 341 ~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~ 416 (690)
..++....+..+..++ .. +.+.+.+..+...+.+++.+..+ ......+.. ..........++.
T Consensus 210 ~~~~~~~~~~~~~~~~-~~-----------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (398)
T TIGR00895 210 IVNAIAPQMQAEAQSA-LP-----------EQKATQGTKRSVFKALFQGKTAR-ITVLLWLLYFMLLVGVYFLTNWLPKL 276 (398)
T ss_pred HHHHHHHhcccccccc-cc-----------ccccccchhhHHHHHHhcchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433222111100 00 00000000111122233332222 222111111 1111111112233
Q ss_pred cCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Q psy2962 417 TANLGG---NIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITG 493 (690)
Q Consensus 417 ~~~l~~---~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 493 (690)
....+. .......+..+..+++.++.+++.||++||..+. ...+.++...++.... ...+...+..++.+++.+.
T Consensus 277 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~ 354 (398)
T TIGR00895 277 MVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTAL-LLLLGAVFAVLVGSTL-FSPTLLLLLGAIAGFFVNG 354 (398)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHH
Confidence 333332 2344556667788999999999999999994443 3344444333333322 2244455566677788888
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 494 AYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 494 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
..+...++..|.+|++.|+++.|+.+.+..+|++++|.+.|.
T Consensus 355 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~ 396 (398)
T TIGR00895 355 GQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGY 396 (398)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 889999999999999999999999999999999999999876
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-25 Score=238.01 Aligned_cols=301 Identities=15% Similarity=0.193 Sum_probs=213.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
..+.|++.+++.++.++++++.|+++||+|||+++.++.++.+++.++++++++++.+++.|++.|++.+...+....++
T Consensus 37 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~ 116 (382)
T PRK10091 37 IPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVL 116 (382)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHH-HHHHhcCchhHHHhcCCHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLA-YWWFIPESARWLISKGRNEEAKL 340 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~-~~~~lpesp~~l~~~~~~~ea~~ 340 (690)
.|++++++|++++++...+..+|..++++++..+. +||+.|++.++..++..+ .++++||.++ +.+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~----~~~~----- 187 (382)
T PRK10091 117 SKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRD----EAKG----- 187 (382)
T ss_pred HHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCc----cccc-----
Confidence 99999999999999999999999999999887763 799999998887666544 3445676431 0000
Q ss_pred HHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHH-HHHHHHHHhhccCC
Q psy2962 341 IIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFV-CSLTYYGLSWNTAN 419 (690)
Q Consensus 341 ~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~ 419 (690)
. .+ ...+.+|++..+.......+.... .....|..++..+.
T Consensus 188 ---------------------------~-~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (382)
T PRK10091 188 ---------------------------G-LR----------EQFHFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFI 229 (382)
T ss_pred ---------------------------C-HH----------HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 00 001234555555433332222211 11222333344333
Q ss_pred CCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHH
Q psy2962 420 LGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYG 496 (690)
Q Consensus 420 l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 496 (690)
.+.+ ......+.++..+++.++.+++.||+|+|+.+..+..+.+++.+++....+. .+...+..++..++.....+
T Consensus 230 ~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~ 308 (382)
T PRK10091 230 SGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGM-KTASLIFAFICCAGLFALSA 308 (382)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHhhhH
Confidence 3432 3445566778889999999999999999999888887777776555443322 23333333333343333333
Q ss_pred -HHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 497 -AVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 497 -~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
.......+..|.+.++.+ ..+....+|.+++|.+.|+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~ 346 (382)
T PRK10091 309 PLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGM 346 (382)
T ss_pred HHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHH
Confidence 233344555555555544 3467788999999999987
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.2e-25 Score=241.03 Aligned_cols=296 Identities=18% Similarity=0.199 Sum_probs=194.1
Q ss_pred HHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHH--------HHHHHHHHHHhhhhhhHHHHHHHHhhhcC
Q psy2962 198 GVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFW--------TFTACRLIVGASTSGVFLVAYVLALEMVG 269 (690)
Q Consensus 198 g~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~--------~l~~~R~l~G~~~g~~~~~~~~~i~e~~~ 269 (690)
+..+|+++.|+++||+|||++++.+.++.+++.++++++++++ .++++|+++|++.+...+....++.|++|
T Consensus 68 ~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p 147 (434)
T PRK15075 68 MRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIAT 147 (434)
T ss_pred HhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCC
Confidence 3357899999999999999999999999999999999999987 46899999999999999999999999999
Q ss_pred CCcchhhhhHHHHHHHHHHHHHHHHHHHh-----------hhchHHHHHHHHHHHHHHHHHHHhcCchhHHHhcCCHHHH
Q psy2962 270 PSKRIIAGTVIHMFFSIGFLLIAGLAYFV-----------HDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEA 338 (690)
Q Consensus 270 ~~~R~~~~~~~~~~~~lG~~l~~~l~~~l-----------~~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~~~~ea 338 (690)
+++|++++++...+..+|..+++.++..+ .+||+.|++..+..++........||++++...+
T Consensus 148 ~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~------ 221 (434)
T PRK15075 148 PGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARK------ 221 (434)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh------
Confidence 99999999999988888888777776654 3799999875544322222222234432211000
Q ss_pred HHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHH-HH-HHHHHHHHHHHhhc
Q psy2962 339 KLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIF-FL-WFVCSLTYYGLSWN 416 (690)
Q Consensus 339 ~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~-~~-~~~~~~~~~~~~~~ 416 (690)
++.+.+..++.+.+++..+....... .. .......+|.+.+.
T Consensus 222 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l 265 (434)
T PRK15075 222 ------------------------------------HRPSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVYTPTFG 265 (434)
T ss_pred ------------------------------------hccccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000011222233333222211111 11 11223344455554
Q ss_pred cCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH-HHHhc-CCChhHHHHHHHHHHHHHH
Q psy2962 417 TANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLI-VSALL-PLDLNTVSIVLAMMGKFFI 491 (690)
Q Consensus 417 ~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l-~~~~~-~~~~~~~~~~~~~l~~~~~ 491 (690)
.+..+.+ ......+.++..+++.++.|++.||+|||+.+..+..+..+..+ ..... .............+.+++.
T Consensus 266 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (434)
T PRK15075 266 KTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLY 345 (434)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence 4434432 33444556677889999999999999999988776554433222 11111 2222222222233334555
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy2962 492 TGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARV-GGIFASYTSVL 535 (690)
Q Consensus 492 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l-g~~i~p~i~~~ 535 (690)
+...+....+..|.+|++.|+++.|+.+.++.. ++.++|.+.++
T Consensus 346 g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~ 390 (434)
T PRK15075 346 GSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTW 390 (434)
T ss_pred HHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHH
Confidence 555666778899999999999999997666554 58889999886
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-25 Score=238.24 Aligned_cols=312 Identities=14% Similarity=0.093 Sum_probs=237.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccc-----cHHHHHHHHHHHHhhhhhhHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAP-----DFWTFTACRLIVGASTSGVFLV 259 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~-----s~~~l~~~R~l~G~~~g~~~~~ 259 (690)
..+.+++.+++.++.+++++++|+++||+|||++++.+.++..++.++.++++ +++.+++.|++.|++.+...+.
T Consensus 33 ~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~ 112 (365)
T TIGR00900 33 ASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPA 112 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999988888877 9999999999999999999999
Q ss_pred HHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHHHHHHHh--cCchhHHHhcCC
Q psy2962 260 AYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDILVTLPGLIYLAYWWFI--PESARWLISKGR 334 (690)
Q Consensus 260 ~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---~~Wr~~~~i~~i~~ll~~~~~~~l--pesp~~l~~~~~ 334 (690)
..+++.|++|+++|++++++.+.+..+|.++++.++..+ .+||+.+++.++..++..+..+.+ ||.++ +.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 188 (365)
T TIGR00900 113 YQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAA----SEI 188 (365)
T ss_pred HHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCC----ccc
Confidence 999999999999999999999999999999999998887 379999998877766555444433 32211 000
Q ss_pred HHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHHH-HHH
Q psy2962 335 NEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTY-YGL 413 (690)
Q Consensus 335 ~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~-~~~ 413 (690)
++ .++ + .. ++....++.++|+|.++...+..++..+...... ...
T Consensus 189 -~~---------------~~~------------~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (365)
T TIGR00900 189 -QA---------------LSN------------A-VL-----RDTREGIKFVLKNPLLRTLLLLALLFNLVFAPAIVALF 234 (365)
T ss_pred -cc---------------cch------------h-HH-----HHHHhHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 000 0 00 0001234567788877766655554444332222 222
Q ss_pred hhc-cCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q psy2962 414 SWN-TANLGG---NIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKF 489 (690)
Q Consensus 414 ~~~-~~~l~~---~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~ 489 (690)
+++ .+.++. .........++..+++.++.+++.||++||+.+..+..+.+++++.+.+.+. +.+...+..++.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~ 313 (365)
T TIGR00900 235 PYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPP-NFPLFLVLWFAIGV 313 (365)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhch-hHHHHHHHHHHHHH
Confidence 222 222332 2344555667778899999999999999999988887777777766666543 24455556667778
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 490 FITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 490 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+.+...+....+..|..|++.|+++.|+.++...+|+.++|.+.|.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~ 359 (365)
T TIGR00900 314 GYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGP 359 (365)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999999999999999999999999999886
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-24 Score=234.85 Aligned_cols=301 Identities=15% Similarity=0.151 Sum_probs=219.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
+.+.++..+++.++..+++++.|.++||+|||++++.+.++.+++.++++++++++.++++|++.|++.+...+....++
T Consensus 54 ~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i 133 (394)
T PRK10213 54 EGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLT 133 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHH-HHhcCchhHHHhcCCHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAYW-WFIPESARWLISKGRNEEAKL 340 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~~-~~lpesp~~l~~~~~~~ea~~ 340 (690)
.|++|+++|+++.++...+.++|.+++|.++..+. +||+.|++.++.+++..+.. ..+||+|+. +
T Consensus 134 ~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~-----~------ 202 (394)
T PRK10213 134 MRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE-----P------ 202 (394)
T ss_pred HHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc-----c------
Confidence 99999999999999999999999999999998873 79999999887766554333 335654320 0
Q ss_pred HHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHH-HHHHHHhhccCC
Q psy2962 341 IIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCS-LTYYGLSWNTAN 419 (690)
Q Consensus 341 ~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~ 419 (690)
++.....++++|+|.++...+..++...... ...+..+++.+.
T Consensus 203 ------------------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 246 (394)
T PRK10213 203 ------------------------------------SHQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNL 246 (394)
T ss_pred ------------------------------------ccchhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0001123456778877765444333332221 122323333344
Q ss_pred CCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHH
Q psy2962 420 LGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYG 496 (690)
Q Consensus 420 l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 496 (690)
.+.+ ........++..+++.++.+++.||.+++.......+..+..+++... .. ..+......++.+++.+...+
T Consensus 247 ~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~~~~~l~~~-~~-~~~~~~~~~~l~G~~~~~~~~ 324 (394)
T PRK10213 247 AGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAVSALVLTLW-GS-DKIVATGVAIIWGLTFALVPV 324 (394)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH-hh-hHHHHHHHHHHHHHHHHhhhH
Confidence 4432 345556667788899999999999965443333333323333333322 22 244444555666677777777
Q ss_pred HHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 497 AVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 497 ~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
...++..+..|+ .++...+.......+|..+||.+.|.
T Consensus 325 ~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~~l~G~ 362 (394)
T PRK10213 325 GWSTWITRSLAD-QAEKAGSIQVAVIQLANTCGAAIGGY 362 (394)
T ss_pred HHHHHHHHHCcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777778888874 45677777778888999999999987
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-24 Score=234.51 Aligned_cols=298 Identities=15% Similarity=0.158 Sum_probs=208.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhh---hc-----cccHHHHHHHHHHHHhhhhhh
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLA---AF-----APDFWTFTACRLIVGASTSGV 256 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~---~~-----s~s~~~l~~~R~l~G~~~g~~ 256 (690)
..+.|++.++++++..++++++|+++||+|||++++.+.++..++.+.. ++ .++++.++++|+++|++.+..
T Consensus 50 ~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 129 (392)
T PRK12382 50 NTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQL 129 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999988877665432 22 357899999999999999999
Q ss_pred HHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHHHHHHHhcCchhHHHhcC
Q psy2962 257 FLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDILVTLPGLIYLAYWWFIPESARWLISKG 333 (690)
Q Consensus 257 ~~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---~~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~ 333 (690)
.+...+++.|++|+++|++++++.+.+..+|.+++|.++..+ .+||+.+.+..+..++........||.+.
T Consensus 130 ~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 203 (392)
T PRK12382 130 LTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAFNGTVRKVPA------ 203 (392)
T ss_pred HHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhccCCCC------
Confidence 999999999999999999999999999999999999998876 37888766654443333222222232211
Q ss_pred CHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHH-HHHHHH
Q psy2962 334 RNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVC-SLTYYG 412 (690)
Q Consensus 334 ~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~-~~~~~~ 412 (690)
+ + +.+.+.++.+| .++...+..++..... ....+.
T Consensus 204 ~-----------------------------------~-------~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 239 (392)
T PRK12382 204 H-----------------------------------A-------GERPSLWSVVG--LIWKPGLGLALQGVGFAVIGTFV 239 (392)
T ss_pred C-----------------------------------c-------ccCchHHHHHH--HHHHhHHHHHHHHHHHhHHHHHH
Confidence 0 0 00001111111 1111111111111111 111122
Q ss_pred HhhccCCCC-chHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q psy2962 413 LSWNTANLG-GNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFI 491 (690)
Q Consensus 413 ~~~~~~~l~-~~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~ 491 (690)
..+..+ .+ ..........++..+++.++.+++.||+|+|+.+..+..+.+++.+++...++ .+...+..++.+++.
T Consensus 240 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~g~~~ 316 (392)
T PRK12382 240 SLYFAS-KGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPT--AWVALAGAALTGAGC 316 (392)
T ss_pred HHHHHh-cCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHH
Confidence 222211 22 22334445566777889999999999999999988888887777766655432 344444555566777
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 492 TGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 492 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+...+.......|.+|++.|+++.|+.++...+|+.++|.+.++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~ 360 (392)
T PRK12382 317 SLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGM 360 (392)
T ss_pred HhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777888899999999999999999999999999999886
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=241.67 Aligned_cols=366 Identities=13% Similarity=-0.000 Sum_probs=256.0
Q ss_pred cceeehhhhhhhhccCCCCCcchhccchhhcccccCCCccccccccceeeeCCccchhHHHHHHHHHHHHHHHHHHhhcc
Q psy2962 132 NTTVSEVLMVFHRRLGDKVPSLYIDLNQTIQYSRSTQEPVLTNFVMWSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISD 211 (690)
Q Consensus 132 ~tiv~e~~p~~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvC~~~~~~gli~s~~~lg~~ig~~~~G~lsD 211 (690)
.|++.-.+|.+.+++|.+ ..+.+|+.+.|.++..++.+++|+++|
T Consensus 22 ~tiv~~a~p~i~~~l~~s-----------------------------------~~~~~~~~~~~~l~~~~~~~~~G~l~D 66 (495)
T PRK14995 22 ATVLHVAAPTLSMTLGAS-----------------------------------GNELLWIIDIYSLVMAGMVLPMGALGD 66 (495)
T ss_pred HHHHHHHHHHHHHHhCCC-----------------------------------HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666788888888766 467899999999999999999999999
Q ss_pred ccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHHhhhc-CCCcchhhhhHHHHHHHHHHHH
Q psy2962 212 RFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLALEMV-GPSKRIIAGTVIHMFFSIGFLL 290 (690)
Q Consensus 212 r~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~-~~~~R~~~~~~~~~~~~lG~~l 290 (690)
|+|||++++++.++..++++++++++|++.++++|+++|+|.+...+.....+.+++ ++++|+++++++.....+|.++
T Consensus 67 ~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~ 146 (495)
T PRK14995 67 RIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAF 146 (495)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998888887776 6789999999999999999999
Q ss_pred HHHHHHHh---hhchHHHHHHHHHHHHHH-HHHHHhcCchhHHHhcCCHHHHHHHHHH-------HHHHcCC--cchh-h
Q psy2962 291 IAGLAYFV---HDWRHLDILVTLPGLIYL-AYWWFIPESARWLISKGRNEEAKLIIQA-------VAEENKV--ILEG-F 356 (690)
Q Consensus 291 ~~~l~~~l---~~Wr~~~~i~~i~~ll~~-~~~~~lpesp~~l~~~~~~~ea~~~l~~-------~~~~n~~--~~~~-~ 356 (690)
+|.+++++ .+||+.|++.....++.+ +..+++||.|+- .+++.+.....+.. ....+.. .... .
T Consensus 147 gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~--~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 224 (495)
T PRK14995 147 GPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGR--RDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWV 224 (495)
T ss_pred HHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHH
Confidence 99999988 379999999877766654 444557776531 11112211111100 0000000 0000 0
Q ss_pred hhhcccCCC--chHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHH-HHHHHHhhccCCCCch---HHHHHHH
Q psy2962 357 VLDGLLAPS--PEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCS-LTYYGLSWNTANLGGN---IYLNFII 430 (690)
Q Consensus 357 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~l~~~---~~~~~~~ 430 (690)
......... .......+ .+.+...--.+++|++.++...+..++..+... ..++.+.+.....+.+ .......
T Consensus 225 ~~~~~~~~~~~l~~f~~~e-~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~ 303 (495)
T PRK14995 225 TSLTLLTGALLLGLFIRTQ-LAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLP 303 (495)
T ss_pred HHHHHHHHHHHHHHHHHHH-hcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 000000000 00000001 111111122568888877665555544443332 2333444444334433 4455556
Q ss_pred HHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q psy2962 431 SGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPL-DLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTV 509 (690)
Q Consensus 431 ~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~ 509 (690)
.++...++.++.|++.||+|+|+.+..+.++.+++.+++..... ...+......++.+++.+...+.....+.+..|++
T Consensus 304 ~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~ 383 (495)
T PRK14995 304 VMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPE 383 (495)
T ss_pred HHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHH
Confidence 67778889999999999999999888888877777665554432 22334445566677888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 510 IRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 510 ~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
.++.+.++.++...+|+.+|+.+.+.
T Consensus 384 ~~g~~~~~~~~~~~lG~~~G~ai~g~ 409 (495)
T PRK14995 384 KAAAAGAIETMAYELGAGLGIAIFGL 409 (495)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998886
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=235.25 Aligned_cols=308 Identities=15% Similarity=0.183 Sum_probs=225.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
+.+.+++.+++.++..+++++.|+++||+|||++++.+.++.+++.++.+++++++.+++.|++.|++.+...+....++
T Consensus 39 ~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 118 (385)
T TIGR00710 39 ASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALV 118 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHH-HHHhcCchhHHHhcCCHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAY-WWFIPESARWLISKGRNEEAKL 340 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~-~~~lpesp~~l~~~~~~~ea~~ 340 (690)
.|++|+++|+++.++.+....+|.++++.++..+. +||+.+++.++..++..+. +++.||+++. .+.++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--- 191 (385)
T TIGR00710 119 RDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPY----EARIQ--- 191 (385)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC----cccCC---
Confidence 99999999999999999999999999999988763 7999999888776665543 4446665421 00000
Q ss_pred HHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHH-HHHHHHhhccCC
Q psy2962 341 IIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCS-LTYYGLSWNTAN 419 (690)
Q Consensus 341 ~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~ 419 (690)
.+ .....+++++|+++++...+...+.+.... ...+.+.+..+.
T Consensus 192 -----------------------------~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (385)
T TIGR00710 192 -----------------------------IS------TYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDI 236 (385)
T ss_pred -----------------------------HH------HHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 00 001124566777877766555444333222 222223333333
Q ss_pred CCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcC--C-ChhHHHHHHHHHHHHHHHH
Q psy2962 420 LGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLP--L-DLNTVSIVLAMMGKFFITG 493 (690)
Q Consensus 420 l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~--~-~~~~~~~~~~~l~~~~~~~ 493 (690)
.+.+ ........++..+++.++.+++.||+++|+.+..+..+.+++.+++.... . ...+.......+.+++.+.
T Consensus 237 ~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 316 (385)
T TIGR00710 237 MGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPMMFVGIGNSM 316 (385)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 3432 33445556778889999999999999999988877766666655544331 1 1222333344556677777
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 494 AYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 494 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
..+.......|..| +.++++.++.+.....++.+.+.+.+.
T Consensus 317 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~ 357 (385)
T TIGR00710 317 ISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSL 357 (385)
T ss_pred HHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78888888889888 468999999988887655444444444
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-25 Score=244.89 Aligned_cols=326 Identities=13% Similarity=0.072 Sum_probs=219.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHH-HHHHHHhhhhhhHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTA-CRLIVGASTSGVFLVAYVL 263 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~-~R~l~G~~~g~~~~~~~~~ 263 (690)
..+.+++.+.+.++..++.++.|+++||+|||++++.+.++.+++.++++++++++.+++ .|++.|++.+...+....+
T Consensus 53 ~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~ 132 (455)
T TIGR00892 53 YSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTM 132 (455)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence 567899999999999999999999999999999999999999999999999999998865 5799999999877788888
Q ss_pred HhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHHHHHHHh-cCchhHHHhcCCHHHHH
Q psy2962 264 ALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDILVTLPGLIYLAYWWFI-PESARWLISKGRNEEAK 339 (690)
Q Consensus 264 i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---~~Wr~~~~i~~i~~ll~~~~~~~l-pesp~~l~~~~~~~ea~ 339 (690)
+.++++ ++|+++.++...+..+|..+++.++..+ .+||+.|++.+++.++..+..+++ ++.+.. .+.+.++ +
T Consensus 133 ~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~-~ 208 (455)
T TIGR00892 133 LGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQ--RVSKSKS-K 208 (455)
T ss_pred HHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCccc--ccccccc-c
Confidence 999995 7899999999999999999998888766 379999999998877655444443 322110 0000000 0
Q ss_pred HHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHHH-HHHhhccC
Q psy2962 340 LIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTY-YGLSWNTA 418 (690)
Q Consensus 340 ~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~ 418 (690)
++.+. +...++ . ......++..+....+++++|.++...+..++..+.....+ +...+. .
T Consensus 209 ---------~~~~~-~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~-~ 269 (455)
T TIGR00892 209 ---------EGLPP-DGSTKK-------L-SKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYA-K 269 (455)
T ss_pred ---------ccCCC-CCcccc-------c-cccchhhhhhhhcchHHhcCchHHHHHHHHHHHHHHccchHHHHHHHH-H
Confidence 00000 000000 0 00000000001111357788887766555444444332222 223332 2
Q ss_pred CCCc---hHHHHHHHHHHHHHHHHHHHHHHHhhc--CChhHHHH--HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q psy2962 419 NLGG---NIYLNFIISGMVEIPAYLSSMLTLDRY--GRKNFLCP--CLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFI 491 (690)
Q Consensus 419 ~l~~---~~~~~~~~~~l~~i~~~~~~~~l~dr~--grr~~l~~--~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~ 491 (690)
..+. .......+.+++.+++.++++++.||. ++|+.... +.++.+++.++....+ +.+..++..++.+++.
T Consensus 270 ~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~--~~~~~~i~~~~~G~~~ 347 (455)
T TIGR00892 270 DKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAG--DYTGLVIYCIFFGLSF 347 (455)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhc--hHHHHHHHHHHHHHHh
Confidence 3343 234455566777888888999999973 33333322 2333333333333322 2444455566666777
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 492 TGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 492 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+...+....+..|.+|++.+++++|+.+....+|++++|.+.|.
T Consensus 348 g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~ 391 (455)
T TIGR00892 348 GSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGR 391 (455)
T ss_pred chHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceee
Confidence 77788888999999999999999999999999999999999886
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=236.24 Aligned_cols=335 Identities=10% Similarity=0.069 Sum_probs=238.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
..+.+++.+.+.+++.+++++.|+++||+|||++++.+.++.+++.++++++++++.++++|++.|++.+...+....++
T Consensus 41 ~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i 120 (394)
T PRK03699 41 VSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLI 120 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh----hhchHHHHHHHHHHHHHHHHHHHhcCchhHHHhcCCHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV----HDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKL 340 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l----~~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~~~~ea~~ 340 (690)
.|++|+++|+++.+..+.+..+|..++|.+...+ .+||+.|++.+++.++..+..++ .+.|+. .+ +
T Consensus 121 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~----~~--~--- 190 (394)
T PRK03699 121 THVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLF-SEFPAL----GK--H--- 190 (394)
T ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh-cCCccc----cc--c---
Confidence 9999999999999999889999988888877654 37999999988877665544333 222210 00 0
Q ss_pred HHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHH-HHHHHHHHhhccCC
Q psy2962 341 IIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFV-CSLTYYGLSWNTAN 419 (690)
Q Consensus 341 ~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~ 419 (690)
. + + + ++.. .++. .++.++...+..++.... .....+.+.+..+.
T Consensus 191 ----------~--~----~----------~----~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~ 235 (394)
T PRK03699 191 ----------A--P----K----------A----DKPV----AKEK-WGIGVLFLAIAALLYILAQLTFISWVPEYAQKK 235 (394)
T ss_pred ----------C--c----c----------c----cCcc----cccc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0 0 0000 0011 123333333322222222 23334455555444
Q ss_pred CCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHH
Q psy2962 420 LGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYG 496 (690)
Q Consensus 420 l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 496 (690)
++.+ .........+..+++.++.+++.||++||+.+.....+.++.+.++...++ .+...+..++.+++.+..++
T Consensus 236 ~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~G~~~~~~~~ 313 (394)
T PRK03699 236 FGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDD--PSHLLYAILGLGFFSSAIYT 313 (394)
T ss_pred cCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCC--chHHHHHHHHHHHHHHHHHH
Confidence 5533 333444556778899999999999999999888777666665555444332 23333444555666777777
Q ss_pred HHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCccccccccccccchhhccccCCCcchhhcccc
Q psy2962 497 AVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGV 576 (690)
Q Consensus 497 ~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (690)
....+..|..|.+ ++...|....+..+|++++|.+.++.. +
T Consensus 314 ~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~------~-------------------------------- 354 (394)
T PRK03699 314 TIITLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIV------A-------------------------------- 354 (394)
T ss_pred HHHHHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHH------H--------------------------------
Confidence 7777788877744 577788899999999999999998721 1
Q ss_pred chhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHhhhccCCC
Q psy2962 577 TVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSLILPETH 618 (690)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~ 618 (690)
..+....+++.+++.+++.++++.++++.
T Consensus 355 -------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (394)
T PRK03699 355 -------------HFGLQAALLTANGLYAVVFVMCILLGFVS 383 (394)
T ss_pred -------------HhCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 34566778888888888777776666543
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-24 Score=230.47 Aligned_cols=333 Identities=15% Similarity=0.126 Sum_probs=235.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHH-HHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFM-ISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVL 263 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll-~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~ 263 (690)
..+.|++.+++.++..+.+++.|.++||+|||+.++ .+.++..++.++++++++++.+++.|++.|.+.+...+....+
T Consensus 32 ~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~ 111 (375)
T TIGR00899 32 PAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFAL 111 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 578999999999999999999999999999988765 4566667778888999999999999999998888888888899
Q ss_pred HhhhcCCCcchhh--hhHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHH-HHHhcCchhHHHhcCCHHH
Q psy2962 264 ALEMVGPSKRIIA--GTVIHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAY-WWFIPESARWLISKGRNEE 337 (690)
Q Consensus 264 i~e~~~~~~R~~~--~~~~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~-~~~lpesp~~l~~~~~~~e 337 (690)
..|+.++++|++. .+....+.++|.++++.++..+. +||+.|++.++..++..+. ++++||.|++.. ++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~ 186 (375)
T TIGR00899 112 AREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAP-----GA 186 (375)
T ss_pred HHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcc-----cc
Confidence 9999887777754 57788888999999999888773 7999999998887666544 445788764210 00
Q ss_pred HHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHHH-HHHhhc
Q psy2962 338 AKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTY-YGLSWN 416 (690)
Q Consensus 338 a~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~ 416 (690)
....+.++.++++.++...+..++.+....... +.+.+.
T Consensus 187 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (375)
T TIGR00899 187 ----------------------------------------LTRLEVRGLLASRDTRLLFVACTLMWGCNILYIINMPLLI 226 (375)
T ss_pred ----------------------------------------cCcchhhhhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 000012234556666554444444444322222 222333
Q ss_pred cCCCCchH---HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Q psy2962 417 TANLGGNI---YLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITG 493 (690)
Q Consensus 417 ~~~l~~~~---~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 493 (690)
.+.++.+. ........+..+++.++.+++.||+|||+.+..+.++..+..+.+...+ +.+...+..++.+++.+.
T Consensus 227 ~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~g~ 304 (375)
T TIGR00899 227 IHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADN--SLWALLMLQLLNAIFIGI 304 (375)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 33344332 2233334455677888999999999999988877666555544443332 234444445555667777
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCccccccccccccchhhccccCCCcchhhc
Q psy2962 494 AYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITR 573 (690)
Q Consensus 494 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (690)
..+....+..|..|++ ++++.|+.+...++|.+++|.+.+... +
T Consensus 305 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~------~----------------------------- 348 (375)
T TIGR00899 305 LAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILA------E----------------------------- 348 (375)
T ss_pred HHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHH------H-----------------------------
Confidence 7778888899999875 679999999999999999999988621 1
Q ss_pred cccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHhhhccC
Q psy2962 574 YGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSLILPE 616 (690)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpe 616 (690)
..++...+++.+++.+++.++.++++|
T Consensus 349 ----------------~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 349 ----------------RWSYHAVYWFAIVMLIVALFCLLLIKD 375 (375)
T ss_pred ----------------hccchhHHHHHHHHHHHHHHHHheecC
Confidence 345667788888888888777766543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=241.17 Aligned_cols=348 Identities=15% Similarity=0.122 Sum_probs=245.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
..+.+++.+.+.++.+++.++.|+++||+|||++++++.++.+++.++++++++++.++++|+++|++.+...+....++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i 115 (485)
T TIGR00711 36 LSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTL 115 (485)
T ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHHHH-HHHhcCchhHHHhcCCHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDILVTLPGLIYLAY-WWFIPESARWLISKGRNEEAKL 340 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---~~Wr~~~~i~~i~~ll~~~~-~~~lpesp~~l~~~~~~~ea~~ 340 (690)
.|++|+++|+++.+++..+..+|..+++.+++.+ .+||+.|++.++++++..+. .+++||+++ ..+++.+....
T Consensus 116 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d~~g~ 193 (485)
T TIGR00711 116 LNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP--AASENFDFLGL 193 (485)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc--cccCCCcHHHH
Confidence 9999999999999999999999999999999887 37999999988777666543 444666443 11122222111
Q ss_pred HHHHH-------HHHcCCcch---hhhhhcc-cCCC--chHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHH
Q psy2962 341 IIQAV-------AEENKVILE---GFVLDGL-LAPS--PEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCS 407 (690)
Q Consensus 341 ~l~~~-------~~~n~~~~~---~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~ 407 (690)
.+... ....+.... +...... .... .......+ .+.+.+....+++|++.++...+..++..+...
T Consensus 194 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (485)
T TIGR00711 194 LLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWE-LTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLY 272 (485)
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHH-HcCCCCccCHHHHcCCChHHHHHHHHHHHHHHH
Confidence 11100 000110000 0000000 0000 00000001 111111222467888887776665555544333
Q ss_pred -HHHHHHhhccCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHh-c-CCChhHHHH
Q psy2962 408 -LTYYGLSWNTANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSAL-L-PLDLNTVSI 481 (690)
Q Consensus 408 -~~~~~~~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~-~-~~~~~~~~~ 481 (690)
..++.+.+..+..+.+ ........+++.+++.++.+++.||+|||+.+..+..+.+++++++.+ . +....+...
T Consensus 273 ~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (485)
T TIGR00711 273 GSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIA 352 (485)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHH
Confidence 3333444444444433 345555667788899999999999999999998888888877776652 2 223334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 482 VLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 482 ~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
...++.+++.+..++.......+..|++.|+.+.|+.++...+|+.+++.+.+.
T Consensus 353 ~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ 406 (485)
T TIGR00711 353 LPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITT 406 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777777777777778888999999999999999999999999998875
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-25 Score=242.97 Aligned_cols=323 Identities=14% Similarity=0.120 Sum_probs=225.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhcc--ccHHHHHHHHHHHHhhhhhhHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFA--PDFWTFTACRLIVGASTSGVFLVAYV 262 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s--~s~~~l~~~R~l~G~~~g~~~~~~~~ 262 (690)
+.+.|++.+.+.+++++++++.|+++||+|||+++.++.++++++.+++.++ .+++.+++.|+++|++.+...+....
T Consensus 75 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~ 154 (465)
T TIGR00894 75 GALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHK 154 (465)
T ss_pred HHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHH
Confidence 7889999999999999999999999999999999999999999998887553 56888999999999999999999999
Q ss_pred HHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh----hhchHHHHHHHHHHHHHHHHHHH-hcCchhHHHhcCCHHH
Q psy2962 263 LALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV----HDWRHLDILVTLPGLIYLAYWWF-IPESARWLISKGRNEE 337 (690)
Q Consensus 263 ~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l----~~Wr~~~~i~~i~~ll~~~~~~~-lpesp~~l~~~~~~~e 337 (690)
++.|++|+++|++++++...+..+|.+++++++..+ .+||+.|++.++++++..+.+++ .+|+|+.... .+.+|
T Consensus 155 ~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~ 233 (465)
T TIGR00894 155 IIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPC-ISKFE 233 (465)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCC-CCHHH
Confidence 999999999999999999999999999999998776 28999999999988777655544 5666642100 01111
Q ss_pred HHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHH-HHHHHHHHhhc
Q psy2962 338 AKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFV-CSLTYYGLSWN 416 (690)
Q Consensus 338 a~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~ 416 (690)
++.+++ . .+.+..+.+.+..++++++++.++...+..+..... ..+..|.+.+.
T Consensus 234 -~~~i~~---~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l 288 (465)
T TIGR00894 234 -KKYINS---S---------------------LQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFI 288 (465)
T ss_pred -HHHHHh---h---------------------cccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110000 0 000000111234578899998888776665554443 33444555555
Q ss_pred cCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHH--------HHHHHHH--HHHHHHHHhcCCChhHHHHHH
Q psy2962 417 TANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFL--------CPCLILS--GLCLIVSALLPLDLNTVSIVL 483 (690)
Q Consensus 417 ~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l--------~~~~~~~--~i~~l~~~~~~~~~~~~~~~~ 483 (690)
.+.++.+ ......+..++.+++.+++|++.||+++|+.. ..+.... ++..+...... ...+..+++
T Consensus 289 ~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 367 (465)
T TIGR00894 289 SWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLS-AAFYLTIII 367 (465)
T ss_pred HHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcC-CchHHHHHH
Confidence 5555533 33444556777889999999999987643211 1111111 11111111112 223333444
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 484 AMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 484 ~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
..+++++.+...+.......|..|. .+|.+.|+.++.+.+|++++|.+.+.
T Consensus 368 ~~l~~~~~~~~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~ 418 (465)
T TIGR00894 368 LTLANAVSSGPLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGN 418 (465)
T ss_pred HHHHHHHhhhhhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 4444455555555555666777776 79999999999999999999999886
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.6e-24 Score=230.14 Aligned_cols=299 Identities=15% Similarity=0.101 Sum_probs=211.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
..+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++++.++++|+++|++.+...+.....+
T Consensus 40 ~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~ 119 (381)
T PRK03633 40 TWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESAL 119 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhhh--chHHHHHHHHHHHHHHHHHHHhcCchhHHHhcCCHHHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHD--WRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLII 342 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~~--Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~~~~ea~~~l 342 (690)
.+..++++|++++++...+..+|..+++.++..+.. ++...+..+......+.. ++.+..++ +
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~-------- 184 (381)
T PRK03633 120 MCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLPWVTGLVLAAILPL-LFTRILNQ------Q-------- 184 (381)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHH-HHhcccCC------C--------
Confidence 899999999999999999999999999999988753 222333322222211111 11111110 0
Q ss_pred HHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCc
Q psy2962 343 QAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNTANLGG 422 (690)
Q Consensus 343 ~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 422 (690)
. + +++..+.++++|+|.++......+.........+...+.+.++.+.
T Consensus 185 ---------------------------~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~ 232 (381)
T PRK03633 185 ---------------------------A----E-NHDSTSIWPMLKLRQARLGVNGCIISGIVLGSLYGLMPLYLNHQGM 232 (381)
T ss_pred ---------------------------C----C-CCCCCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 0 0 0011234456677766543332222222222223223333333343
Q ss_pred h---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 423 N---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVY 499 (690)
Q Consensus 423 ~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 499 (690)
+ .........+..+++.+..+++.||+++|+.+..+..+.+++++... +. . .......+.+++.....+...
T Consensus 233 s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~~--~-~~~~~~~l~g~~~~~~~p~~~ 307 (381)
T PRK03633 233 SDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--SQ--A-AMAPALFILGAAGFTLYPVAM 307 (381)
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--hh--H-HHHHHHHHHHHHHHhHHHHHH
Confidence 2 33445566677889999999999999999988887777766655432 11 1 122223333444455678888
Q ss_pred HHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 500 IFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 500 ~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
..+.|..|++.++...+..+....+|++++|.+.|+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~ 343 (381)
T PRK03633 308 AWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAM 343 (381)
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999998888888888888889999999999987
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-24 Score=230.30 Aligned_cols=334 Identities=12% Similarity=0.016 Sum_probs=240.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhcc-----ccHHHHHHHHHHHHhhhhhhHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFA-----PDFWTFTACRLIVGASTSGVFLV 259 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s-----~s~~~l~~~R~l~G~~~g~~~~~ 259 (690)
+.+.+++.+++.+++.++.++.|+++||+|.|+++.++.++.++..++.+++ ++++.+++.|++.|++ +..++.
T Consensus 69 ~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~ 147 (462)
T PRK15034 69 TDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFAS 147 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHH
Confidence 6789999999999999999999999999999999999999999999999987 8999999999999997 778899
Q ss_pred HHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---------------------hhchHHHHHHHHHHHHHHHH
Q psy2962 260 AYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---------------------HDWRHLDILVTLPGLIYLAY 318 (690)
Q Consensus 260 ~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---------------------~~Wr~~~~i~~i~~ll~~~~ 318 (690)
....+++|+|+++||+++++.....++|..++++++..+ .+||...++.+++.++..++
T Consensus 148 ~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~ 227 (462)
T PRK15034 148 SMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIA 227 (462)
T ss_pred HHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999666666665444333221 13778777877777666555
Q ss_pred HHHhcCchhHHHhcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHH
Q psy2962 319 WWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVI 398 (690)
Q Consensus 319 ~~~lpesp~~l~~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 398 (690)
.++..+.++ . .+......++++|+|..|...+.
T Consensus 228 ~~~~~~~~~------------------------------------------~-----~~~~~~~~~~vlk~~~~Wllsll 260 (462)
T PRK15034 228 AWSGMNDIA------------------------------------------S-----SRASIADQLPVLQRLHLWLLSLL 260 (462)
T ss_pred HHHhCCCcc------------------------------------------c-----cccCHHHHHHHhCCCchhHHHHH
Confidence 554432211 0 01111234568899998888777
Q ss_pred HHHHHHHHH-HHHHHHhhccCCCCc-hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHH-HhcCC-
Q psy2962 399 IFFLWFVCS-LTYYGLSWNTANLGG-NIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVS-ALLPL- 474 (690)
Q Consensus 399 ~~~~~~~~~-~~~~~~~~~~~~l~~-~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~-~~~~~- 474 (690)
.++.+.... +.++.+.+..+.++. +......+..+...++.+++|+++||+|+|+++.++++++.++.... ...+.
T Consensus 261 y~~tFG~fvg~s~~lp~~~~~~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~ 340 (462)
T PRK15034 261 YLATFGSFIGFSAGFAMLAKTQFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGT 340 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 766655443 333444444444432 22223444567778889999999999999999988887776665432 23332
Q ss_pred --ChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccch---------------------HHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 475 --DLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPT---------------------VIRNIGIGAGSTFARVGGIFASY 531 (690)
Q Consensus 475 --~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~---------------------~~r~~~~g~~~~~~~lg~~i~p~ 531 (690)
.+.+...+..+...++.+...+..+-++...+|+ +.-|.+.|+....+.+|+++.|.
T Consensus 341 ~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~ 420 (462)
T PRK15034 341 GSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQ 420 (462)
T ss_pred cccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhH
Confidence 2233333333334455566666777778788874 14678899999999999999998
Q ss_pred HHHHccccccccCccccccccccccchhhccccCCCcchhhccccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHh
Q psy2962 532 TSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILS 611 (690)
Q Consensus 532 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 611 (690)
+.+... +...++...|+++.+..++|.++.
T Consensus 421 ~~g~~~--------------------------------------------------~~~g~~~~~~~~~~~~~~~~~~~~ 450 (462)
T PRK15034 421 AFGMSL--------------------------------------------------NMTGSPVGAMKVFLIFYIVCVLLT 450 (462)
T ss_pred HHHHHH--------------------------------------------------HHcCCcHHHHHHHHHHHHHHHHHH
Confidence 887611 114456778899999999999988
Q ss_pred hhccC
Q psy2962 612 LILPE 616 (690)
Q Consensus 612 ~~lpe 616 (690)
++...
T Consensus 451 w~~y~ 455 (462)
T PRK15034 451 WLVYG 455 (462)
T ss_pred HHHhc
Confidence 75433
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.9e-25 Score=232.81 Aligned_cols=312 Identities=25% Similarity=0.338 Sum_probs=228.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.++..++++++.++++|++.|++.+...+....++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i 110 (352)
T PF07690_consen 31 PSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALI 110 (352)
T ss_dssp SHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccc
Confidence 57899999999999999999999999999999999999999999977777778888999999999999999999999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHH-HHHhcCchhHHHhcCCHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAY-WWFIPESARWLISKGRNEEAKL 340 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~-~~~lpesp~~l~~~~~~~ea~~ 340 (690)
.|++++++|++++++...+..+|.++++.++..+. +||+.+++.++..++..++ .++++++++....+.
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~------- 183 (352)
T PF07690_consen 111 ADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERES------- 183 (352)
T ss_dssp HHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--S-------
T ss_pred cccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhccccccccc-------
Confidence 99999999999999999999999999999999885 7999999999988887653 344444432000000
Q ss_pred HHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHH-HHHHHHhhccCC
Q psy2962 341 IIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCS-LTYYGLSWNTAN 419 (690)
Q Consensus 341 ~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~ 419 (690)
+. ++.+..++.....++.+++++.++...+..+...+... ...+.+.+..+.
T Consensus 184 -------------~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 236 (352)
T PF07690_consen 184 -------------PK--------------ESESKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEV 236 (352)
T ss_dssp -------------ST--------------TTT--HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred -------------cc--------------ccccccccccccccccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhc
Confidence 00 00000000111135666666666522333333322322 333333333444
Q ss_pred CCch-HH---HHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHH
Q psy2962 420 LGGN-IY---LNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPL-DLNTVSIVLAMMGKFFITGA 494 (690)
Q Consensus 420 l~~~-~~---~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~-~~~~~~~~~~~l~~~~~~~~ 494 (690)
++.+ .. ....+.++..+++.++.+++.||+++|+..........+..+.+..... ++.++.+...++.+++.+..
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 316 (352)
T PF07690_consen 237 LGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIALFLIGFGFGIV 316 (352)
T ss_dssp HHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4444 22 3355666777788999999999999988777777666666655544432 23344455556667788888
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 495 YGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFAS 530 (690)
Q Consensus 495 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p 530 (690)
.+....+..|..|++.|+++.|+.++...+|++++|
T Consensus 317 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 317 FPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp CHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999998
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.1e-24 Score=236.53 Aligned_cols=347 Identities=14% Similarity=0.109 Sum_probs=240.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
..+.+++.+.+.++..++.+++|+++||+|||++++.+.++.+++.++++++++++.++++|+++|++.+...+...+++
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~ 123 (471)
T PRK10504 44 PLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTV 123 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHHHHH-HHhcCchhHHHhcCCHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDILVTLPGLIYLAYW-WFIPESARWLISKGRNEEAKL 340 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---~~Wr~~~~i~~i~~ll~~~~~-~~lpesp~~l~~~~~~~ea~~ 340 (690)
.|++|+++|+++.++......+|.+++|.+++.+ .+||+.|++.....++..+.. ...|+.+. .+.|.+.+..
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~ 200 (471)
T PRK10504 124 MKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGF 200 (471)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHH
Confidence 9999999999999999999999999999998877 379999998877665554433 33454331 1223332221
Q ss_pred HHHHHH------HHcCCcc---hhhhhhcccC-CCc-h-HHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHH
Q psy2962 341 IIQAVA------EENKVIL---EGFVLDGLLA-PSP-E-EEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSL 408 (690)
Q Consensus 341 ~l~~~~------~~n~~~~---~~~~~~~~~~-~~~-~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 408 (690)
...... ..++.+. .......... ... . ....++.+..++.. ..+++|+|.++...+..++.++....
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~l~~~~~~~~~~~~ 279 (471)
T PRK10504 201 LLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALF-SLKLFRTRTFSLGLAGSFAGRIGSGM 279 (471)
T ss_pred HHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-CHHHhcccchHHHHHHHHHHHHHHHH
Confidence 111000 0011000 0000000000 000 0 00000111111112 23578999888776666666655544
Q ss_pred HHHHHhhccC-CCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCC-hhHHHHHH
Q psy2962 409 TYYGLSWNTA-NLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLD-LNTVSIVL 483 (690)
Q Consensus 409 ~~~~~~~~~~-~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~-~~~~~~~~ 483 (690)
.++..+++.+ ..+.+ .........+..+++..+.+++.||+|||+.+..+..+.++..+++.+.+.. ..+.....
T Consensus 280 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (471)
T PRK10504 280 LPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVALLGWYYLLPFV 359 (471)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 4444443332 34433 3344445556667777889999999999999988888777776666554322 22222333
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 484 AMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 484 ~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
.++.+++.+..++....+..+..|++.++.+.|+.++...+|..++|.+.+.
T Consensus 360 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ 411 (471)
T PRK10504 360 LFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGL 411 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 4444567777778888888999999999999999999999999999999885
|
|
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=234.97 Aligned_cols=329 Identities=15% Similarity=0.190 Sum_probs=250.4
Q ss_pred cceeeeCCccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccc--cHHHHHHHHHHHHhhhh
Q psy2962 177 MWSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAP--DFWTFTACRLIVGASTS 254 (690)
Q Consensus 177 ~~~LvC~~~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~--s~~~l~~~R~l~G~~~g 254 (690)
+|++. +.+.+++.+.++.|+++++++.|+++||+|.|+++..+.++.++++++..++. +++.+++.|+++|++.|
T Consensus 67 ~~~ws---~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g 143 (466)
T KOG2532|consen 67 EYDWS---STEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQG 143 (466)
T ss_pred eecCC---HHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHh
Confidence 37775 88999999999999999999999999999999999999999999999998865 55678999999999999
Q ss_pred hhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh----hhchHHHHHHHHHHHHHHHHHHH-hcCchhHH
Q psy2962 255 GVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV----HDWRHLDILVTLPGLIYLAYWWF-IPESARWL 329 (690)
Q Consensus 255 ~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l----~~Wr~~~~i~~i~~ll~~~~~~~-lpesp~~l 329 (690)
..+++...+...|.|++||++..++...+..+|.++.-++++++ .||+.+|++.++.+++..+++++ ..|+|.-
T Consensus 144 ~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~- 222 (466)
T KOG2532|consen 144 VLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK- 222 (466)
T ss_pred HHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc-
Confidence 99999999999999999999999999999999999988877776 37999999999999988776655 4566641
Q ss_pred HhcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHH-HHHHHH
Q psy2962 330 ISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFL-WFVCSL 408 (690)
Q Consensus 330 ~~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~-~~~~~~ 408 (690)
+.+..+. .++++.+. ..++..+++.+.+++++++++.+|...+..+.. |....+
T Consensus 223 --h~~is~~--El~~I~~~---------------------k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l 277 (466)
T KOG2532|consen 223 --HPNISEK--ELKYIEKG---------------------KSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLL 277 (466)
T ss_pred --CCCCCHH--HHHHHHhc---------------------ccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 1111110 11111000 001111122567899999999999877766553 556677
Q ss_pred HHHHHhhccCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCC---------hhHHHHHHHHHHHHHHHHHhcCCCh
Q psy2962 409 TYYGLSWNTANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGR---------KNFLCPCLILSGLCLIVSALLPLDL 476 (690)
Q Consensus 409 ~~~~~~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~gr---------r~~l~~~~~~~~i~~l~~~~~~~~~ 476 (690)
..|.+.|..+.++.+ .+....+.-+...+..+++|.++||+.+ |..-.++....+++++.+.+.+.+.
T Consensus 278 ~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~ 357 (466)
T KOG2532|consen 278 LTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEH 357 (466)
T ss_pred HHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCc
Confidence 778888887777754 3444555667778889999999998754 3444667777777777777777655
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 477 NTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 477 ~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
.+..+++..+.....+...+..+.-..+..| ++-+..+|+.+.+..+.++++|.+.+.
T Consensus 358 ~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~ 415 (466)
T KOG2532|consen 358 RLLAVILLTIAIGLSGFNISGFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGI 415 (466)
T ss_pred chHHHHHHHHHHHHcccchhhhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheee
Confidence 5555555555444444444444444444444 678999999999999999999999986
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5e-24 Score=229.44 Aligned_cols=310 Identities=17% Similarity=0.169 Sum_probs=216.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
+.+.+++.+++.++.+++.++.|+++||+|||+++..+.++.+++.+++.++++++.+++.|++.|++.+...+....++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 104 (377)
T PRK11102 25 AGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALM 104 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHHH-HHHHhcCchhHHHhcCCHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDILVTLPGLIYLA-YWWFIPESARWLISKGRNEEAKL 340 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---~~Wr~~~~i~~i~~ll~~~-~~~~lpesp~~l~~~~~~~ea~~ 340 (690)
.|++++++|++++++...+..+|..+++.++..+ .+||+.+++.++..++..+ ..+++||+++- ++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--- 174 (377)
T PRK11102 105 RDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETLPK-------ER--- 174 (377)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccCcc-------cc---
Confidence 9999999999999999999999999999998776 3799999988887766543 44556765320 00
Q ss_pred HHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHH-HHHHHHhhccCC
Q psy2962 341 IIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCS-LTYYGLSWNTAN 419 (690)
Q Consensus 341 ~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~ 419 (690)
+.+. + . ++...+++++++++..+...+...+.+.... ...+.+.++.+.
T Consensus 175 ---------~~~~--------------~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (377)
T PRK11102 175 ---------RQPF--------------H-L------RTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIEL 224 (377)
T ss_pred ---------cCCC--------------C-h------HHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 0000 0 0 0001134456777776654444333322221 111222223333
Q ss_pred CC---chHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhc--CCChhHHHHHHHHHHHHHHHHH
Q psy2962 420 LG---GNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALL--PLDLNTVSIVLAMMGKFFITGA 494 (690)
Q Consensus 420 l~---~~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~--~~~~~~~~~~~~~l~~~~~~~~ 494 (690)
.+ .+........++..+++.++.+++.||+|||+.+..+..+..+..+.+... .....+...+...+...+.+..
T Consensus 225 ~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (377)
T PRK11102 225 NGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVGVAAFVGCVSMI 304 (377)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 33 234455566677888999999999999999998887776544333222221 1112222222333333344444
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy2962 495 YGAVYIFSAEQFPTVIRNIGIGAGSTFA-RVGGIFASYTSVL 535 (690)
Q Consensus 495 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~-~lg~~i~p~i~~~ 535 (690)
......+..|..| +.++.+.++.+... .+|..+++.+.+.
T Consensus 305 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~ 345 (377)
T PRK11102 305 SSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLA 345 (377)
T ss_pred hHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555666778877 67899999887764 3677777776544
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.5e-24 Score=229.73 Aligned_cols=309 Identities=15% Similarity=0.057 Sum_probs=224.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
..+.++..+.+.++..+++++.|.++||+|||++++++.++.+++.++.+++++++.+++.|++.|++.+...+....++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i 126 (406)
T PRK15402 47 AEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAI 126 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHHHH-HHHhcCchhHHHhcCCHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDILVTLPGLIYLAY-WWFIPESARWLISKGRNEEAKL 340 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---~~Wr~~~~i~~i~~ll~~~~-~~~lpesp~~l~~~~~~~ea~~ 340 (690)
.|++++++|.+..++......+|..++|.++..+ .+||+.+++.++..++..+. ++.+||+++.. ++ ++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~--- 199 (406)
T PRK15402 127 QESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRV---GE-KL--- 199 (406)
T ss_pred HHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccc---cc-cc---
Confidence 9999999999999998888888999999988776 47999999888887666543 34467654210 00 00
Q ss_pred HHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHH-HHHHHHHhhccCC
Q psy2962 341 IIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVC-SLTYYGLSWNTAN 419 (690)
Q Consensus 341 ~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~ 419 (690)
+ . ++...+++.++++|.++...+..++..... ....+.+.+..+.
T Consensus 200 -------------~---------------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 245 (406)
T PRK15402 200 -------------S---------------L------KELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISG 245 (406)
T ss_pred -------------c---------------H------HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 0 0 000113456778887776555444333322 1112223333333
Q ss_pred CCchH---HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcC---CChhHHHHHHHHHHHHHHHH
Q psy2962 420 LGGNI---YLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLP---LDLNTVSIVLAMMGKFFITG 493 (690)
Q Consensus 420 l~~~~---~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~---~~~~~~~~~~~~l~~~~~~~ 493 (690)
++.+. ........+..+++.++.+++.||+++|+.+..+.++.+++.+++...+ ....++..+..++.+++.+.
T Consensus 246 ~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~ 325 (406)
T PRK15402 246 EQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLSLYAFGIGL 325 (406)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHH
Confidence 44332 2233334556778899999999999999988888777766666554432 22233334445555566666
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 494 AYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 494 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
..+..........| +.|+++.++.+....+|..+++.+.+.
T Consensus 326 ~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~g~~~~~~ 366 (406)
T PRK15402 326 ANAGLYRLTLFSSD-VSKGTVSAAMGMLSMLIFTVGIELSKH 366 (406)
T ss_pred HhhhHHHHHhhhcc-ccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66655555544444 789999999999999999999999887
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-24 Score=231.35 Aligned_cols=300 Identities=24% Similarity=0.259 Sum_probs=212.0
Q ss_pred HHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHH--------HHHHHHHHHHhhhhhhHHHHHHHHhh
Q psy2962 195 LMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFW--------TFTACRLIVGASTSGVFLVAYVLALE 266 (690)
Q Consensus 195 ~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~--------~l~~~R~l~G~~~g~~~~~~~~~i~e 266 (690)
.+++..+++++.|+++||+|||++++++.++..++.+++++++++. .++++|+++|++.+...+....++.|
T Consensus 44 ~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~ 123 (394)
T TIGR00883 44 GFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAE 123 (394)
T ss_pred HHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhh
Confidence 3444457899999999999999999999999999999999999875 48899999999999999999999999
Q ss_pred hcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh-----------hhchHHHHHHHHHHHHHHHHHHHhcCchhHHHhcCCH
Q psy2962 267 MVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV-----------HDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRN 335 (690)
Q Consensus 267 ~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l-----------~~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~~~ 335 (690)
++++++|++..++...+..+|.++++.++..+ .+||+.+++.++..++.......+||+|++...+
T Consensus 124 ~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 200 (394)
T TIGR00883 124 YAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQ--- 200 (394)
T ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHH---
Confidence 99999999999999999999999998876543 2699999988777666655555677766431100
Q ss_pred HHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcH--HHHHHHHHHHHHHHHH-HHHHH
Q psy2962 336 EEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPN--LFKKSVIIFFLWFVCS-LTYYG 412 (690)
Q Consensus 336 ~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~l~~~~~~~~~~-~~~~~ 412 (690)
.+++....+.+++++++. ++......++...... ...+.
T Consensus 201 --------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (394)
T TIGR00883 201 --------------------------------------EKHKKKRGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYL 242 (394)
T ss_pred --------------------------------------hccccccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000111223455555544 3333333322222222 22333
Q ss_pred HhhccCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHH-HHH-HhcCCChhHHHHHHHHHH
Q psy2962 413 LSWNTANLGG---NIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCL-IVS-ALLPLDLNTVSIVLAMMG 487 (690)
Q Consensus 413 ~~~~~~~l~~---~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~-l~~-~~~~~~~~~~~~~~~~l~ 487 (690)
+.+..+..+. ..........+..+++.++.+++.||+|||+.+.....+..+.. ... ........+......++.
T Consensus 243 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (394)
T TIGR00883 243 PTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGL 322 (394)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 3333343432 23444556677788899999999999999998765554443332 222 222223344444555566
Q ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy2962 488 KFFITGAYGAVYIFSAEQFPTVIRNIGIGAGS-TFARVGGIFASYTSVL 535 (690)
Q Consensus 488 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~-~~~~lg~~i~p~i~~~ 535 (690)
+++.+...+....+..|.+|++.|+++.|+.. ....+|+.++|.+.++
T Consensus 323 g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~ 371 (394)
T TIGR00883 323 ALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAA 371 (394)
T ss_pred HHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHH
Confidence 67777788889999999999999999999854 4556888899999886
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-23 Score=221.84 Aligned_cols=283 Identities=27% Similarity=0.366 Sum_probs=233.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
+.+.+++.+++.++..+++++.|+++||+|||+.+..+.++..++.++..++++++.++++|++.|++.+...+....++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 112 (352)
T cd06174 33 ASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALI 112 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHHhcCchhHHHhcCCHHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLI 341 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~~~~ea~~~ 341 (690)
.|++++++|++.+++...+..+|..+++.++..+. +||+.+++.++..++..+...+++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 174 (352)
T cd06174 113 AEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL------------------ 174 (352)
T ss_pred HHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH------------------
Confidence 99999999999999999999999999999998874 599999998887776655544332
Q ss_pred HHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHH-HHHHhhccCCC
Q psy2962 342 IQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLT-YYGLSWNTANL 420 (690)
Q Consensus 342 l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~l 420 (690)
|.++...+..+......... .+...+..+..
T Consensus 175 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (352)
T cd06174 175 ------------------------------------------------RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVL 206 (352)
T ss_pred ------------------------------------------------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence 22333333333333332222 23333333322
Q ss_pred C---chHHHHHHHHHHHHHHHHHHHHHHHhhcCChh-HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHH
Q psy2962 421 G---GNIYLNFIISGMVEIPAYLSSMLTLDRYGRKN-FLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYG 496 (690)
Q Consensus 421 ~---~~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~-~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 496 (690)
+ ..........++..+++.++.+++.||+|||+ .+..+..+..++++.....++ .+...+..++.+++.+...+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~ 284 (352)
T cd06174 207 GLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPS--LALLLVALLLLGFGLGFAFP 284 (352)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHhccch
Confidence 3 23445666777888999999999999999999 888888888888877776543 45556667777888888899
Q ss_pred HHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 497 AVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 497 ~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
....+..|..|++.|++..|+.+....+|..++|.+.+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~ 323 (352)
T cd06174 285 ALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGL 323 (352)
T ss_pred hHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.5e-24 Score=233.20 Aligned_cols=328 Identities=13% Similarity=0.098 Sum_probs=214.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhcc----ccHHHHHHHHHHHHhhhhhhHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFA----PDFWTFTACRLIVGASTSGVFLVA 260 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s----~s~~~l~~~R~l~G~~~g~~~~~~ 260 (690)
+.+.+++.+++.++..+++++.|+++||+|||++++.+.++.+++.++.++. .+++.+.+.|++.|++.+..++..
T Consensus 60 ~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~ 139 (438)
T TIGR00712 60 KGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPC 139 (438)
T ss_pred HhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHH
Confidence 5789999999999999999999999999999999999999999998887764 467788899999999999999999
Q ss_pred HHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHH-h---hhchHHHHHHHHHHHHHH-HHHHHhcCchhHHHhcCCH
Q psy2962 261 YVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYF-V---HDWRHLDILVTLPGLIYL-AYWWFIPESARWLISKGRN 335 (690)
Q Consensus 261 ~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~-l---~~Wr~~~~i~~i~~ll~~-~~~~~lpesp~~l~~~~~~ 335 (690)
...+.|++|+++|++++++.+.+..+|..+++.+... + .+||+.|++.+++.++.. +.++++||+|+....+ +.
T Consensus 140 ~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~ 218 (438)
T TIGR00712 140 GRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLP-PI 218 (438)
T ss_pred HHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCC-Cc
Confidence 9999999999999999999999999999988776543 2 379999999888877654 4556678877532100 00
Q ss_pred HHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHH-HHHHHHHHh
Q psy2962 336 EEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFV-CSLTYYGLS 414 (690)
Q Consensus 336 ~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~-~~~~~~~~~ 414 (690)
++ . .++. +.+ .. ++.+.+.+.+..-.+.++|++.++...+...+.... .....+.+.
T Consensus 219 ~~-~--------~~~~--~~~----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 276 (438)
T TIGR00712 219 EE-Y--------RNDY--PDD----YN-------EKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPT 276 (438)
T ss_pred hh-c--------cccc--ccc----cc-------cccccccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 00 0 0000 000 00 000000000000112467888777765555444433 333445555
Q ss_pred hccCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHH---HHHHHHHhcCCChhHHHHHHHHHHH
Q psy2962 415 WNTANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSG---LCLIVSALLPLDLNTVSIVLAMMGK 488 (690)
Q Consensus 415 ~~~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~---i~~l~~~~~~~~~~~~~~~~~~l~~ 488 (690)
+..+..+.+ ......+.++..+++.++++++.||+++++....+..+.. ++.+.+...+..+.+......+..+
T Consensus 277 ~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 356 (438)
T TIGR00712 277 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIG 356 (438)
T ss_pred HHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 554444433 3445566777889999999999999964332222222211 1222222222222332222222222
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q psy2962 489 FFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGG-IFASYTSVL 535 (690)
Q Consensus 489 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~-~i~p~i~~~ 535 (690)
++..+..........|.+|++.|+++.|+.+..+.+|+ +++|.+.|.
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~ 404 (438)
T TIGR00712 357 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 404 (438)
T ss_pred HHHccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHH
Confidence 22222222233567899999999999999999988875 679999886
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.8e-24 Score=229.64 Aligned_cols=330 Identities=16% Similarity=0.118 Sum_probs=235.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHHhh
Q psy2962 187 YRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLALE 266 (690)
Q Consensus 187 ~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i~e 266 (690)
..|++.+++.++..+++++.|+++||+|||++++.+.++.+++.++.+++++++.+++.|++.|++.+ ..+....++.+
T Consensus 55 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~ 133 (408)
T PRK09874 55 WSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIAT 133 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999755 56777888999
Q ss_pred hcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHHHH-HHHhcCchhHHHhcCCHHHHHHHH
Q psy2962 267 MVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDILVTLPGLIYLAY-WWFIPESARWLISKGRNEEAKLII 342 (690)
Q Consensus 267 ~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---~~Wr~~~~i~~i~~ll~~~~-~~~lpesp~~l~~~~~~~ea~~~l 342 (690)
++++++|+++.++...+..+|.++++.++..+ .+||+.+++.++..++..+. .+++||.++.. .+ ++ +
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~-~--- 205 (408)
T PRK09874 134 QVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPV---SK-KE-M--- 205 (408)
T ss_pred hcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccc---cc-hh-h---
Confidence 99999999999999999999999999998876 37999999988876665543 44456543200 00 00 0
Q ss_pred HHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHH-HHHHHHHH-HHHHhhccCCC
Q psy2962 343 QAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFF-LWFVCSLT-YYGLSWNTANL 420 (690)
Q Consensus 343 ~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~-~~~~~~~~-~~~~~~~~~~l 420 (690)
.+ .....+.+++++.+...+...+ ........ .+...+..+..
T Consensus 206 ---------------------------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (408)
T PRK09874 206 ---------------------------LH--------MREVVTSLKNPKLVLSLFVTTLIIQVATGSIAPILTLYVRELA 250 (408)
T ss_pred ---------------------------hH--------HHHHHHhCcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00 0011223455554433322222 11111111 11111111111
Q ss_pred C--ch----HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Q psy2962 421 G--GN----IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGA 494 (690)
Q Consensus 421 ~--~~----~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 494 (690)
+ .+ ......+.++..+++.+..+++.||+|||+.+..+..+.+++.+.....++ .+...+..++.+++.+..
T Consensus 251 ~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~ 328 (408)
T PRK09874 251 GNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQT--PLQLGILRFLLGAADGAL 328 (408)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHhhhHhh
Confidence 1 11 122233445666778888899999999999988888777766665544432 444445555666777777
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCccccccccccccchhhccccCCCcchhhcc
Q psy2962 495 YGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRY 574 (690)
Q Consensus 495 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 574 (690)
.+...+...+..|++.|++.+|+.+....+|.+++|.+.+... +
T Consensus 329 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~------~------------------------------ 372 (408)
T PRK09874 329 LPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAIS------A------------------------------ 372 (408)
T ss_pred HHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHH------h------------------------------
Confidence 8888888888899999999999999999999999999998621 1
Q ss_pred ccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHhhh
Q psy2962 575 GVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSLI 613 (690)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 613 (690)
..++...|++.+++.++++++.++
T Consensus 373 ---------------~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 373 ---------------NYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred ---------------hcchhHHHHHHHHHHHHHHHHHHH
Confidence 445678888888888888777664
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-24 Score=230.55 Aligned_cols=328 Identities=14% Similarity=0.129 Sum_probs=224.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.++.+++++++.+++.|++.|++.+...+...+++
T Consensus 29 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 108 (379)
T TIGR00881 29 KTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTV 108 (379)
T ss_pred HhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHH-HHHHHh---hhchHHHHHHHHHHHHHH-HHHHHhcCchhHHHhcCCHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIA-GLAYFV---HDWRHLDILVTLPGLIYL-AYWWFIPESARWLISKGRNEEAK 339 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~-~l~~~l---~~Wr~~~~i~~i~~ll~~-~~~~~lpesp~~l~~~~~~~ea~ 339 (690)
.|++|+++|+++.++...+..+|.++++ .++..+ .+||+.+++.++..++.. +.+++.||+|+.. +..++
T Consensus 109 ~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-- 183 (379)
T TIGR00881 109 TKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSC---GLPPA-- 183 (379)
T ss_pred HHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCcccc---ccCcc--
Confidence 9999999999999999999999999999 455544 379999998887766654 4445567765411 00000
Q ss_pred HHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHH-HHHHHHHhhccC
Q psy2962 340 LIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVC-SLTYYGLSWNTA 418 (690)
Q Consensus 340 ~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~ 418 (690)
++.. .+ +... ..++.+.+.+..+...++++|+|.++...+..++.+... ....+...+..+
T Consensus 184 ---------~~~~-~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (379)
T TIGR00881 184 ---------EEMP-NE----EPDG----DAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQ 245 (379)
T ss_pred ---------ccCc-cc----cccc----ccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 00 0000 000000011111223456778888776666555544433 233344444444
Q ss_pred CCCc---hHHHHHHHHHHHHHHHHHHHHHHHhhcC-ChhHHH-HHH-HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Q psy2962 419 NLGG---NIYLNFIISGMVEIPAYLSSMLTLDRYG-RKNFLC-PCL-ILSGLCLIVSALLPLDLNTVSIVLAMMGKFFIT 492 (690)
Q Consensus 419 ~l~~---~~~~~~~~~~l~~i~~~~~~~~l~dr~g-rr~~l~-~~~-~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 492 (690)
..+. +.........+..+++.++.+++.||.. ||+... ... ....++.......+....+...+..++.+++..
T Consensus 246 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 325 (379)
T TIGR00881 246 EKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICLFALGFLVY 325 (379)
T ss_pred HhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHh
Confidence 4443 2345556667788899999999999864 333222 222 112222222222222223333333344444444
Q ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 493 GAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 493 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
...+....+..|.+|++.|+++.|+.+.+..+|+.++|.+.+.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~ 368 (379)
T TIGR00881 326 GPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGY 368 (379)
T ss_pred hhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHH
Confidence 5555667788999999999999999999999999999999886
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-23 Score=223.24 Aligned_cols=338 Identities=13% Similarity=0.043 Sum_probs=223.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhh---c-cccHHHHHHHHHHHHhhhhhhHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAA---F-APDFWTFTACRLIVGASTSGVFLVA 260 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~---~-s~s~~~l~~~R~l~G~~~g~~~~~~ 260 (690)
..+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+++. + .++++.+++.|++.|++.+...+..
T Consensus 47 ~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~ 126 (402)
T TIGR00897 47 PQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSF 126 (402)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHH
Confidence 57899999999999999999999999999999999999999988876552 3 3588899999999999999888888
Q ss_pred HHHHhhhcCCCcchhhhhHHHHHHHHHH-HHHHHHHHHh---hhchHHHHHHHHHHHHHH-HHHHHhcCchhHHHhcCCH
Q psy2962 261 YVLALEMVGPSKRIIAGTVIHMFFSIGF-LLIAGLAYFV---HDWRHLDILVTLPGLIYL-AYWWFIPESARWLISKGRN 335 (690)
Q Consensus 261 ~~~i~e~~~~~~R~~~~~~~~~~~~lG~-~l~~~l~~~l---~~Wr~~~~i~~i~~ll~~-~~~~~lpesp~~l~~~~~~ 335 (690)
...+.+++++++|++++++...+.++|. ++++.++..+ .+|+..++......++.. +..++.++.++ .
T Consensus 127 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~ 199 (402)
T TIGR00897 127 LVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFT-------P 199 (402)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCC-------c
Confidence 8899999999999999999999999997 5788887654 255544443333222222 22233333211 0
Q ss_pred HHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHH-HHHHHHHHh
Q psy2962 336 EEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFV-CSLTYYGLS 414 (690)
Q Consensus 336 ~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~-~~~~~~~~~ 414 (690)
++.+ + + . +.++....+++++|+|.++...+..++.... ....++.+.
T Consensus 200 ~~~~-----------~---~--------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 247 (402)
T TIGR00897 200 QHMQ-----------T---R--------------E----KFSELGKAATILFTNPNVLLGGMVRIINTIGLFGFAVFLPM 247 (402)
T ss_pred cccc-----------C---C--------------c----chhhHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0 0 0 0000011244678888877655554433332 223333333
Q ss_pred hccCCCCchH---HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHH-HHHHHHHHHHHHHHhcC---CChhHHHHHHHHHH
Q psy2962 415 WNTANLGGNI---YLNFIISGMVEIPAYLSSMLTLDRYGRKNFLC-PCLILSGLCLIVSALLP---LDLNTVSIVLAMMG 487 (690)
Q Consensus 415 ~~~~~l~~~~---~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~-~~~~~~~i~~l~~~~~~---~~~~~~~~~~~~l~ 487 (690)
+ .+..+.+. ........+..+++.++.+++.||++||+.+. .+.+..+++.+.+...+ ....+...+..++.
T Consensus 248 ~-~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 326 (402)
T TIGR00897 248 F-VAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVALIIAIAL 326 (402)
T ss_pred H-HHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHH
Confidence 3 34455332 33344566788999999999999999888764 23333333333332221 12233344444455
Q ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCccccccccccccchhhccccCCC
Q psy2962 488 KFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMP 567 (690)
Q Consensus 488 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (690)
+++.+...+ ......|..| +.|+++.|+.+....+|++++|.+.+... +
T Consensus 327 G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~------~----------------------- 375 (402)
T TIGR00897 327 GIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFI------G----------------------- 375 (402)
T ss_pred HHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHH------h-----------------------
Confidence 555554433 3445567666 57999999999999999999999988621 1
Q ss_pred cchhhccccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHhhhcc
Q psy2962 568 KEQITRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSLILP 615 (690)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lp 615 (690)
..+....+++.+++.+++.++..+++
T Consensus 376 ----------------------~~g~~~~~~~~a~~~~i~~~~~~~~~ 401 (402)
T TIGR00897 376 ----------------------FFGAIGVVWIFAALYVVSAFLTAFIR 401 (402)
T ss_pred ----------------------hcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567788888888888877776653
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-23 Score=227.57 Aligned_cols=309 Identities=14% Similarity=0.109 Sum_probs=207.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
....++..++++++++++++++|+++||+|||++++.+.++.+++.++++++++++.++++|+++|++.+...+...+++
T Consensus 50 ~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~ 129 (413)
T PRK15403 50 VSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTV 129 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999988778888899
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHH-HHHhcCchhHHHhcCCHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAY-WWFIPESARWLISKGRNEEAKL 340 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~-~~~lpesp~~l~~~~~~~ea~~ 340 (690)
.|++++++|++++++...+..+|.+++|.+++.+. +||+.|++.++..++..+. ++.+||+++. +++.
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~---~~~~----- 201 (413)
T PRK15403 130 QEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVKR---GAVP----- 201 (413)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCccc---cCCC-----
Confidence 99999999999999999999999999999998773 7999999998887776544 4457876420 0000
Q ss_pred HHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHHH-HHHhhccCC
Q psy2962 341 IIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTY-YGLSWNTAN 419 (690)
Q Consensus 341 ~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~ 419 (690)
.+ . +.....+++++|+|.++...+..++.+....... +.+.+..+.
T Consensus 202 ------------~~---------------~------~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~ 248 (413)
T PRK15403 202 ------------FS---------------A------KSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAVSPVILIDA 248 (413)
T ss_pred ------------CC---------------h------HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHh
Confidence 00 0 0001234677889988876666555444333222 223344444
Q ss_pred CCchHH---HHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHh---cCCChhHHHHHHHHHHHHHHHH
Q psy2962 420 LGGNIY---LNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSAL---LPLDLNTVSIVLAMMGKFFITG 493 (690)
Q Consensus 420 l~~~~~---~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~---~~~~~~~~~~~~~~l~~~~~~~ 493 (690)
.+.+.. ........+.+++..+.+.+.++..+++.......+..++.+++.. ......+..++..++.+++.+.
T Consensus 249 ~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~~~~l~~~G~~~ 328 (413)
T PRK15403 249 GGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVLGTSLYAFGIGL 328 (413)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHH
Confidence 443332 2233334455566666666554443333322222222222222111 1122222234445555666666
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 494 AYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 494 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
..+......-...+ ..+|++.|+.+.....+..+++...++
T Consensus 329 ~~p~~~~~al~~~~-~~~G~a~a~~~~~~~~~~~~~~~~~g~ 369 (413)
T PRK15403 329 IFPTLFRFTLFSNN-LPKGTVSASLNMVILMVMAVSVEIGRW 369 (413)
T ss_pred HhHHHHHHHhccCC-CCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666643322222 226888888888888888888887776
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-23 Score=225.16 Aligned_cols=305 Identities=11% Similarity=0.092 Sum_probs=216.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhh---hccccHHHHHHHHHHHHhhhhhhHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLA---AFAPDFWTFTACRLIVGASTSGVFLVAY 261 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~---~~s~s~~~l~~~R~l~G~~~g~~~~~~~ 261 (690)
+.+.|++.+.+.+++++++++.|+++||+|||+++.++.++.+++.+++ +++++++.++++|+++|+|.+...+...
T Consensus 60 ~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~ 139 (438)
T PRK10133 60 NFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAAN 139 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHH
Confidence 5789999999999999999999999999999999999999999999875 5689999999999999999999999999
Q ss_pred HHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh-----------------------------hhchHHHHHHHHHH
Q psy2962 262 VLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV-----------------------------HDWRHLDILVTLPG 312 (690)
Q Consensus 262 ~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l-----------------------------~~Wr~~~~i~~i~~ 312 (690)
.++.|+.++++|...+++.+.++.+|..+++.++..+ .+||++|+....+.
T Consensus 140 ~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~ 219 (438)
T PRK10133 140 PFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIV 219 (438)
T ss_pred HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987777777789999999999999988876532 24555665433332
Q ss_pred H-HHHHH-HHHhcCchhHHHhcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCc
Q psy2962 313 L-IYLAY-WWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHP 390 (690)
Q Consensus 313 l-l~~~~-~~~lpesp~~l~~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (690)
. +.++. ...+||.+. ++ .. +.+......+.++++|+|
T Consensus 220 ~~~~~~~~~~~~p~~~~--------~~--------------------------------~~-~~~~~~~~~~~~~ll~~~ 258 (438)
T PRK10133 220 LLVALLIMLTKFPALQS--------DN--------------------------------HS-DAKQGSFSASLSRLARIR 258 (438)
T ss_pred HHHHHHHHHhcCCCCCc--------cc--------------------------------cc-cccccchhhhHHHHHhCc
Confidence 2 22222 222343210 00 00 000001112345778888
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHhhc-cCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q psy2962 391 NLFKKSVIIFFLWFVCS-LTYYGLSWN-TANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLC 465 (690)
Q Consensus 391 ~~~~~~l~~~~~~~~~~-~~~~~~~~~-~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~ 465 (690)
.++...+..++...... ...|...+. .+..+.+ .........++.++++++++++.||+|+|+++..+.++..+.
T Consensus 259 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~ 338 (438)
T PRK10133 259 HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMAL 338 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 87765544433333222 122333332 2344433 345556777888999999999999999999988887777666
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 466 LIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 466 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+++..+.+. . ..+....+.+++.+..+|..+....+.+|++ .+.+.++.. +..+|+.++|.+.|.
T Consensus 339 ~~~~~~~~~--~-~~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~ 403 (438)
T PRK10133 339 CLISAFAGG--H-VGLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGF 403 (438)
T ss_pred HHHHHHcCC--h-HHHHHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHh-HHhccchHHHHHHHH
Confidence 665555443 2 2344556678999999999999999998864 567777775 455778888888876
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.6e-23 Score=223.02 Aligned_cols=302 Identities=11% Similarity=0.042 Sum_probs=223.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhc---cccHHHHHHHHHHHHhhhhhhHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAF---APDFWTFTACRLIVGASTSGVFLVAY 261 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~---s~s~~~l~~~R~l~G~~~g~~~~~~~ 261 (690)
..+.|++.+.+++++++++++.|++.||+|||++++++.++.+++.+++.. .++++.+++.|++.|+|.|...+...
T Consensus 37 ~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~ 116 (410)
T TIGR00885 37 AFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAAN 116 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhh
Confidence 578999999999999999999999999999999999999999999988644 46899999999999999999999999
Q ss_pred HHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh-----------------------------hhchHHHHHHHHHH
Q psy2962 262 VLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV-----------------------------HDWRHLDILVTLPG 312 (690)
Q Consensus 262 ~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l-----------------------------~~Wr~~~~i~~i~~ 312 (690)
.++.++.++++|++..++.+.+.++|..+++.++..+ .+||++|++.+++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~ 196 (410)
T TIGR00885 117 PYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVV 196 (410)
T ss_pred HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887655 24999999988877
Q ss_pred HHHHHHHHHh--cCchhHHHhcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCc
Q psy2962 313 LIYLAYWWFI--PESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHP 390 (690)
Q Consensus 313 ll~~~~~~~l--pesp~~l~~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (690)
++..+...+. ||.++ + ++ ++.....+.++++|+|
T Consensus 197 ~~~~~~~~~~~~p~~~~--------~---------------------------------~~---~~~~~~~~~~~~~~~~ 232 (410)
T TIGR00885 197 LAVALLIMLTKMPALNH--------S---------------------------------DA---KQISFSASLSRLARIR 232 (410)
T ss_pred HHHHHHHHHhcCCCCCc--------c---------------------------------cc---ccccchhhHHHHHhCh
Confidence 6655444332 32110 0 00 0000111344677888
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHhhccCCC-CchH---HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q psy2962 391 NLFKKSVIIFFLWFVCSLT-YYGLSWNTANL-GGNI---YLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLC 465 (690)
Q Consensus 391 ~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~l-~~~~---~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~ 465 (690)
.++...+..++........ .|...+..+.. +.+. ............+|+++++++.||+++|+.+.+..+++.+.
T Consensus 233 ~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~ 312 (410)
T TIGR00885 233 HYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMAL 312 (410)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 7777555555443333222 22333322211 2111 11222333556899999999999999999988888888888
Q ss_pred HHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 466 LIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 466 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+++..+.+.. .......+.+++.+..+|..+....+..+++.+..+.++.... +|+++.|.+.|.
T Consensus 313 ~ll~~~~~~~---~~~~~l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~ 377 (410)
T TIGR00885 313 CLGSIFAGGH---VGLYCLTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGF 377 (410)
T ss_pred HHHHHHcCCh---HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHH
Confidence 7777765432 2345555666888899999999999999977655555555544 999999999987
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-23 Score=224.81 Aligned_cols=309 Identities=13% Similarity=0.037 Sum_probs=216.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
..+.+++.+.+.+++.++++++|+++||+|||++++++.++.++++++++++.+. ++.|+++|++.+...|+..+++
T Consensus 37 ~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i 113 (393)
T PRK11195 37 DWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGIL 113 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999998888777664 7889999999999999999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhhhch--HHHHHHHHHHHHHHHHHHHhcCchhHHHhcCCHHHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHDWR--HLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLII 342 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~~Wr--~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~~~~ea~~~l 342 (690)
.|++|+++|++++++.+....+|.+++|.+++++.+|. ..+.+.++..++..+..+.+||+|+.. +.+.++..+.+
T Consensus 114 ~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~ 191 (393)
T PRK11195 114 TELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAALFNLFIPRLGARR--PGQSWNPIALL 191 (393)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc--cccCCCHHHHH
Confidence 99999999999999999999999999999999986654 444444443333344455678765321 00000000000
Q ss_pred HHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHHHHHHh-hccCCCC
Q psy2962 343 QAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLS-WNTANLG 421 (690)
Q Consensus 343 ~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~l~ 421 (690)
+. . ....+.++++|.++...+...+.+.......+..+ +..+.++
T Consensus 192 ~~---------------------------~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg 237 (393)
T PRK11195 192 RD---------------------------F-------FHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLVLAWAPVALG 237 (393)
T ss_pred HH---------------------------H-------HHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 00 0 01124567777766555544444444333333332 2233334
Q ss_pred c---hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHH
Q psy2962 422 G---NIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAV 498 (690)
Q Consensus 422 ~---~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 498 (690)
. ..+......+++.+++.++.+++.||.++|+.+..+.. .++..+.+.+. .+.+...+..++.+++.+...+..
T Consensus 238 ~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~--~~~~~~~~~~~~~G~~~g~~~~~~ 314 (393)
T PRK11195 238 ITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQ--HSLLPAYPLLILIGALGGFFVVPM 314 (393)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHH--hHHHHHHHHHHHHHHhhhhhhhhH
Confidence 3 34455566677788899999999999888877766643 33333333332 223434444555666666666667
Q ss_pred HHHhhcccchHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 499 YIFSAEQFPTVI-RNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 499 ~~~~~e~~p~~~-r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
.+...+..|++. +|.+.|+.+....+|..++..+.+.
T Consensus 315 ~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~ 352 (393)
T PRK11195 315 NALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSL 352 (393)
T ss_pred HHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHH
Confidence 777788766654 7999999999999999999988776
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.2e-23 Score=221.97 Aligned_cols=304 Identities=14% Similarity=0.133 Sum_probs=220.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
+.+.+++.+++.++..++++++|+++||+|||++++.+.++..++.++++++++++.+++.|++.|++.+...+....++
T Consensus 40 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~ 119 (401)
T PRK11043 40 ASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALV 119 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999988888888999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHHHHHHHhcCchhHHHhcCCHHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLI 341 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---~~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~~~~ea~~~ 341 (690)
.|+++++++++..+.......+|..++|.++..+ .+||+.+++.++..++..+..++++|+++. .+ +
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~----- 189 (401)
T PRK11043 120 IDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSKKA----RK-Q----- 189 (401)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCCCc----cc-c-----
Confidence 9999999999999988888899999999888876 379999999888877776666666654320 00 0
Q ss_pred HHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHH-HHHHHHHhhccCCC
Q psy2962 342 IQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVC-SLTYYGLSWNTANL 420 (690)
Q Consensus 342 l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~l 420 (690)
++.+.++++++|++.++...+...+..... ....+.+. +.+..
T Consensus 190 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~ 233 (401)
T PRK11043 190 -----------------------------------SQDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPF-ILEQM 233 (401)
T ss_pred -----------------------------------chHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHH-HHHHc
Confidence 000123456677777665444333222211 11112222 22333
Q ss_pred Cch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHH---HhcCCChhHHHHHHHHHHHHHHHHH
Q psy2962 421 GGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVS---ALLPLDLNTVSIVLAMMGKFFITGA 494 (690)
Q Consensus 421 ~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~---~~~~~~~~~~~~~~~~l~~~~~~~~ 494 (690)
+.+ .........+..+++.++.+++.||+++|+......+..+++.+.+ ........+..++...+.+++.+..
T Consensus 234 g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (401)
T PRK11043 234 GYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCVMAAANGAI 313 (401)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Confidence 433 2333344456677888889999999999887655544444333322 2222222333344445566777788
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 495 YGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 495 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
++.......+..|+ .++++.|+.++....++..++.+.+.
T Consensus 314 ~~~~~~~~~~~~~~-~~g~~~g~~~~~~~~~~~~~~~~~g~ 353 (401)
T PRK11043 314 YPIVVAQALRPFPQ-ATGKAAALQNTLQLGLCFLASLLVSA 353 (401)
T ss_pred HHHHHHHHhhhCcc-cChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887787787775 69999999999988888888888775
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=219.84 Aligned_cols=303 Identities=16% Similarity=0.169 Sum_probs=205.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
..+.++..+++.++..+++++.|+++||+|||+.++.+.++..++.+++.++++++.+++.|++.|++.+...+....++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i 116 (392)
T PRK10473 37 EAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAIL 116 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHHH-HHHHhcCchhHHHhcCCHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDILVTLPGLIYLA-YWWFIPESARWLISKGRNEEAKL 340 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---~~Wr~~~~i~~i~~ll~~~-~~~~lpesp~~l~~~~~~~ea~~ 340 (690)
.|++++++|+++.++.+....+|.+++|.++..+ .+||+.+++.++..++..+ ..+++||+++. +.+ +
T Consensus 117 ~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~--~--- 188 (392)
T PRK10473 117 RDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPA---RAP--A--- 188 (392)
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCc---ccC--C---
Confidence 9999999999999999999999999999998876 3799999998877666544 34556765320 000 0
Q ss_pred HHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHH-HHHHHHHhhccCC
Q psy2962 341 IIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVC-SLTYYGLSWNTAN 419 (690)
Q Consensus 341 ~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~ 419 (690)
+.......++.++++.++...+...+.+... ....+.+.+....
T Consensus 189 -----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (392)
T PRK10473 189 -----------------------------------ASSKPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQ 233 (392)
T ss_pred -----------------------------------ccchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 0000011234566676665444433332221 1222222223333
Q ss_pred CCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHH
Q psy2962 420 LGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYG 496 (690)
Q Consensus 420 l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 496 (690)
++.+ ........++..+++.++.+++.||+|||+.+..+..+.+++.+.+.+.+. .+.......+...+.+..++
T Consensus 234 ~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~g~~~~~~ 311 (392)
T PRK10473 234 MGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPS--HAVSLFGITLICAGFSVGFG 311 (392)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhH
Confidence 3422 234455667788899999999999999999998888877777666655432 22222222333333333333
Q ss_pred HHHHHhhcccchHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 497 AVYIFSAEQFPTVIR-NIGIGAGSTFARVGGIFASYTSV 534 (690)
Q Consensus 497 ~~~~~~~e~~p~~~r-~~~~g~~~~~~~lg~~i~p~i~~ 534 (690)
.. ...++.|.+.| +.+.++..+...+|..+++.+.+
T Consensus 312 ~~--~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~ 348 (392)
T PRK10473 312 VA--MSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAA 348 (392)
T ss_pred HH--HHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 33445554434 33334433333444444444443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.5e-23 Score=222.03 Aligned_cols=345 Identities=13% Similarity=0.038 Sum_probs=229.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCC-cHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGR-KPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVL 263 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Gr-r~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~ 263 (690)
..++|++.+++.++.+++++++|.++||+|| |+++.++.++..++..+..+.++++.+++.|++.|++.+...+...++
T Consensus 37 ~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l 116 (418)
T TIGR00889 37 GAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSI 116 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 6899999999999999999999999999965 778888888888888888999999999999999999887777766655
Q ss_pred Hhhh--------cCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHHhcCchhHHHhc
Q psy2962 264 ALEM--------VGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAYWWFIPESARWLISK 332 (690)
Q Consensus 264 i~e~--------~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~ 332 (690)
...+ .....|.+..| .+|.++++.+++.+. +|+ .|++.++..++..+..+++||+|+- +
T Consensus 117 ~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~~~~e~~~~---~ 186 (418)
T TIGR00889 117 SYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFALTLPDIPVA---K 186 (418)
T ss_pred HHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHhcCCCCCCC---c
Confidence 4322 22233445444 356666666666552 243 3555555555555556678887530 0
Q ss_pred CCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 333 GRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYG 412 (690)
Q Consensus 333 ~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~ 412 (690)
.+.++ . .. +....+.++++|+|.++...+..++........+..
T Consensus 187 ~~~~~------------------------------~-~~-----~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 230 (418)
T TIGR00889 187 STAKM------------------------------S-IK-----VMLGLDAFILFKNKRMAIFFFFSMLLGAPLQITNIF 230 (418)
T ss_pred ccccc------------------------------C-HH-----HHhhhhHHHHhcCCCeeeHHHHHHHHHhHHHHHHHh
Confidence 00000 0 00 000112345678887766555555544433222211
Q ss_pred HhhccCCCC-----------chHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCCh--hHH
Q psy2962 413 LSWNTANLG-----------GNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDL--NTV 479 (690)
Q Consensus 413 ~~~~~~~l~-----------~~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~--~~~ 479 (690)
...+....+ ........+..+.++++.++.+++.||+|||+++..+.++.++.+.++....... .+.
T Consensus 231 ~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~ 310 (418)
T TIGR00889 231 GNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYAL 310 (418)
T ss_pred HHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHH
Confidence 111122222 2235556667778899999999999999999999999988888776665532211 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHccccccccCccccccccccccch
Q psy2962 480 SIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGS-TFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKK 558 (690)
Q Consensus 480 ~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~-~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (690)
.++..++.+++.+...+....++.|.+|++.|++++|+.+ ....+|.+++|.+.|... +
T Consensus 311 l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~------~-------------- 370 (418)
T TIGR00889 311 LFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMV------E-------------- 370 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH------H--------------
Confidence 3344555666666777787889999999999999999997 567899999999998621 1
Q ss_pred hhccccCCCcchhhccccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHhh-hccCCCCC
Q psy2962 559 CLITYKTMPKEQITRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSL-ILPETHHK 620 (690)
Q Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~lpet~~~ 620 (690)
..|- ....++...|.+.+++.++++++.+ ++||+++.
T Consensus 371 --------------~~g~-----------~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 371 --------------KMFA-----------YGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred --------------Hhcc-----------ccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 0000 0013456778888888887777765 77877554
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=216.08 Aligned_cols=300 Identities=13% Similarity=0.073 Sum_probs=215.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
..+.+++.+++.++..+++++.|+++||+|||++++++.++..++.+.+ .+++++.+++.|++.|++.+...+....++
T Consensus 34 ~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~ 112 (355)
T TIGR00896 34 FSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLPSLI 112 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 5789999999999999999999999999999999999999888888877 788999999999999999999888888889
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh-----hchHHHHHHHHHHHHHHHHHHHhcCchhHHHhcCCHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH-----DWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAK 339 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~-----~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~~~~ea~ 339 (690)
.|+++ ++|+++.++.+.+..+|..+++.++..+. +||+.|.+.++..++.. ..++|+.++ +.
T Consensus 113 ~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~--~~~~~~~~~------~~---- 179 (355)
T TIGR00896 113 KRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLAL--LAWIPQVRR------RV---- 179 (355)
T ss_pred HHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH--HHHhhhhcc------cc----
Confidence 99885 68999999999999999999888876652 39988887766544332 223443321 00
Q ss_pred HHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHH-HHHHHHhhccC
Q psy2962 340 LIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCS-LTYYGLSWNTA 418 (690)
Q Consensus 340 ~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~ 418 (690)
+ .++.......++++|+|.++...+..++...... ...+.+.+. +
T Consensus 180 ------------------------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~-~ 225 (355)
T TIGR00896 180 ------------------------------A---ANQTTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAIL-I 225 (355)
T ss_pred ------------------------------C---CCCCCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 0 0000011234567788877655544443333222 222333333 2
Q ss_pred CCCch---HHHHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Q psy2962 419 NLGGN---IYLNFIISGMVEIPAYLSSMLTLDRY-GRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGA 494 (690)
Q Consensus 419 ~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~-grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 494 (690)
+.+.+ ........++..+++.++.+++.||+ +||+.+..+.++.+++.+.+.+.+.... . ....+.+++.+..
T Consensus 226 ~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~l~g~~~g~~ 302 (355)
T TIGR00896 226 SHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGL--W-AWALVLGLGQGGA 302 (355)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHH--H-HHHHHHHHhhhhH
Confidence 33433 34555667788899999999999999 5666666777777776666655443322 1 1344566777777
Q ss_pred HHHHHHHhhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 495 YGAVYIFSAEQ-FPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 495 ~~~~~~~~~e~-~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
++.......+. .+++.++...|+.+..+.+|++++|.+.|+
T Consensus 303 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~ 344 (355)
T TIGR00896 303 FPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGV 344 (355)
T ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77766665544 456777899999999999999999999886
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-22 Score=218.13 Aligned_cols=306 Identities=16% Similarity=0.104 Sum_probs=213.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
+.+.+++.+++.++..++++++|+++||+|||++++.+.++..++.+++.++++++.+++.|++.|++.+...+....+.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 121 (394)
T PRK11652 42 EGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLP 121 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999998888888999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHH-HHHHHhcCchhHHHhcCCHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDILVTLPGLIYL-AYWWFIPESARWLISKGRNEEAKL 340 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---~~Wr~~~~i~~i~~ll~~-~~~~~lpesp~~l~~~~~~~ea~~ 340 (690)
.|++++++|+++.+....+..+|.+++|.++..+ .+||+.|++.++..++.. +..+++||+++. .+ ++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~--- 193 (394)
T PRK11652 122 RDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPA----DA-RR--- 193 (394)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCcc----cc-ch---
Confidence 9999999999999999999999999999998876 379999999887766554 344557776421 00 00
Q ss_pred HHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHHH-HHHhhccCC
Q psy2962 341 IIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTY-YGLSWNTAN 419 (690)
Q Consensus 341 ~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~ 419 (690)
. +....+++++|+|.++...+..+.......... +...+..+.
T Consensus 194 -----------------------------~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (394)
T PRK11652 194 -----------------------------T-------RVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEACSGVLMGAV 237 (394)
T ss_pred -----------------------------h-------HHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 0 001123456677776654443333222221111 112222233
Q ss_pred CCchHH---HHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHH-HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHH
Q psy2962 420 LGGNIY---LNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSG-LCLIVSALLPLDLNTVSIVLAMMGKFFITGAY 495 (690)
Q Consensus 420 l~~~~~---~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~-i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 495 (690)
++.+.. .......++.+++..+.+++.||.+++........+.+ +.............+......++.+++.+..+
T Consensus 238 ~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 317 (394)
T PRK11652 238 LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALFFFGAGMLF 317 (394)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 443332 22333445556666777777777763332222222222 22222222222234444555566677778888
Q ss_pred HHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 496 GAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 496 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+....+..|.+| +.++++.++.+....+|+.+++.+.+.
T Consensus 318 ~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~ 356 (394)
T PRK11652 318 PLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAM 356 (394)
T ss_pred HHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999988 468999999999999999999999876
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=220.18 Aligned_cols=305 Identities=11% Similarity=0.013 Sum_probs=224.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
..+.|++.+++.++..+++++.|+++||+|||++++++.++.+++.++.+++++++.++++|++.|.+.+...+....+.
T Consensus 42 ~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 121 (395)
T PRK10054 42 VDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWF 121 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999988888888899999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh--hchHHHHHHHHHHHHHHHH-HHHhcCchhHHHhcCCHHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH--DWRHLDILVTLPGLIYLAY-WWFIPESARWLISKGRNEEAKLI 341 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~--~Wr~~~~i~~i~~ll~~~~-~~~lpesp~~l~~~~~~~ea~~~ 341 (690)
.|.+++++|+++.++.....++|.+++|.++..+. +|+..|++.++..++.++. .+++||.++ +++ ++
T Consensus 122 ~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~----~~~-~~---- 192 (395)
T PRK10054 122 ADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRSEK----AIA-TE---- 192 (395)
T ss_pred HHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhcccc----ccc-cc----
Confidence 99999999999999999999999999999998873 7999999888776665443 344555421 000 00
Q ss_pred HHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHH-HHHHhhc--cC
Q psy2962 342 IQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLT-YYGLSWN--TA 418 (690)
Q Consensus 342 l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~--~~ 418 (690)
.+ +..+.++++|+|.++...+..++..+..... .+...+. ..
T Consensus 193 ----------------------------~~-------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 237 (395)
T PRK10054 193 ----------------------------TG-------SVWSPSVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVVA 237 (395)
T ss_pred ----------------------------hh-------hhhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHHHHHHHhc
Confidence 00 0011245678887776665555444332211 1111111 12
Q ss_pred CCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHH
Q psy2962 419 NLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAY 495 (690)
Q Consensus 419 ~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 495 (690)
+.+.+ ........++..++.....+.+.||.++|+.+..++.+.+++.+.+.+.. +..+...+...+.+++.....
T Consensus 238 ~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~ 316 (395)
T PRK10054 238 DSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG-NSLLLWGMSAAVFTVGEIIYA 316 (395)
T ss_pred ccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc-hHHHHHHHHHHHHHHHHHHHH
Confidence 22322 22333444455556667888999999999998888877777776665432 223334445566667777767
Q ss_pred HHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 496 GAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 496 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+....++.+..|++.|+++.|..+ ...+|.+++|.+.|.
T Consensus 317 p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~ 355 (395)
T PRK10054 317 PGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGV 355 (395)
T ss_pred hhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHH
Confidence 788889999999999999988655 677999999999987
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=223.11 Aligned_cols=309 Identities=15% Similarity=0.097 Sum_probs=209.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccc-cHHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAP-DFWTFTACRLIVGASTSGVFLVAYVL 263 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~-s~~~l~~~R~l~G~~~g~~~~~~~~~ 263 (690)
+.+.+++.+++.++.++++++.|+++||+|||+.++++.++..++.+++++++ +++.+++.|+++|++.+. .+....+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~ 114 (366)
T TIGR00886 36 TAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPW 114 (366)
T ss_pred HHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHH
Confidence 57899999999999999999999999999999999999999999999999999 999999999999998654 5667889
Q ss_pred HhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh-------------hchHHH-HHHHHHHHHH-HHHHHHhcCchhH
Q psy2962 264 ALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH-------------DWRHLD-ILVTLPGLIY-LAYWWFIPESARW 328 (690)
Q Consensus 264 i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~-------------~Wr~~~-~i~~i~~ll~-~~~~~~lpesp~~ 328 (690)
+.|++++++|+++.++...+..+|..+++.++..+. +||+.+ ++.++..++. ++...+.+|+|+-
T Consensus 115 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (366)
T TIGR00886 115 ISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPG 194 (366)
T ss_pred HHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcc
Confidence 999999999999999998777777766666554331 699998 4445444433 3444456666531
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHH-H
Q psy2962 329 LISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVC-S 407 (690)
Q Consensus 329 l~~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~-~ 407 (690)
+.++.+. +... . . . ...++.....++++++|+++...+..++.+... .
T Consensus 195 -----~~~~~~~--------~~~~---~-----~-------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (366)
T TIGR00886 195 -----KPATGKL--------SFKG---A-----R-------W---SVGTGALGDQLKVFRDRHTWILALLYSVTFGSFLG 243 (366)
T ss_pred -----cccchhc--------cccc---c-----c-------c---cccchhHHHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 0000000 0000 0 0 0 000000113456777777766555544444332 2
Q ss_pred HHHHHHhhccCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCC--hhHHHHH
Q psy2962 408 LTYYGLSWNTANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLD--LNTVSIV 482 (690)
Q Consensus 408 ~~~~~~~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~--~~~~~~~ 482 (690)
...+...+..+.++.+ ......+..+..+++.++.+++.||+|||+.+..+......+..++.+.... ..+...+
T Consensus 244 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (366)
T TIGR00886 244 VSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVSPLSLAVFIV 323 (366)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCCcchHHHHHH
Confidence 2233333443444422 3334455667788899999999999999887777666555555544443222 3333444
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH
Q psy2962 483 LAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGG 526 (690)
Q Consensus 483 ~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~ 526 (690)
...+..++.+...+..+....++.| +.+|++.|+.+..+++|+
T Consensus 324 ~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~ 366 (366)
T TIGR00886 324 LFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLGG 366 (366)
T ss_pred HHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCCC
Confidence 4455556666677778888889988 579999999999887763
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-22 Score=214.04 Aligned_cols=305 Identities=11% Similarity=-0.002 Sum_probs=222.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHH-HHHHHHH-hhhhccccHHHHHHHHHHHHhhhhhhHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISI-LIMDVFG-TLAAFAPDFWTFTACRLIVGASTSGVFLVAYV 262 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~-~l~~i~~-~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~ 262 (690)
..++|++.+++.++..++++++|+++||+|||....... +...+.. ..+.++++++.+++.|+++|.+.+...+...+
T Consensus 38 ~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~a 117 (382)
T TIGR00902 38 EEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAGAHNAWLLFIAIGLFALFFSAGMPIGDA 117 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHccchhHHHH
Confidence 689999999999999999999999999999854332221 1111222 24446889999999999999999888899888
Q ss_pred HHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHHHHHHHhcCchhHHHhcCCHHHHH
Q psy2962 263 LALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAK 339 (690)
Q Consensus 263 ~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---~~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~~~~ea~ 339 (690)
+..++ .++|++..+....+.++|.+++|++++.+ .|||..|++.++..++.+ ..+.++|+++ +.+.+
T Consensus 118 l~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~~~----~~~~~--- 187 (382)
T TIGR00902 118 LANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFML-IGFLIKPTIP----PKDAI--- 187 (382)
T ss_pred HHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH-HHHHcCCCCC----CCccc---
Confidence 88765 47889999999999999999999988877 379999888765533333 3333443321 00000
Q ss_pred HHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q psy2962 340 LIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNTAN 419 (690)
Q Consensus 340 ~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 419 (690)
+ .++.....+.++++|+|+++...+..++.+......+...+.+.++
T Consensus 188 ------------------------------~---~~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~ 234 (382)
T TIGR00902 188 ------------------------------P---EDESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQA 234 (382)
T ss_pred ------------------------------c---ccccccchhHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0001112245788999998887776666555444333333333344
Q ss_pred CCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHH
Q psy2962 420 LGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYG 496 (690)
Q Consensus 420 l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 496 (690)
.+.+ ......+..+.++++..+.+++.||+|+|+.+..+.++.++..+.+.+.+ +.+..+...++.++..+...+
T Consensus 235 ~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~q~l~g~~~~~~~~ 312 (382)
T TIGR00902 235 AGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIE--AFPLIFLLQILHCGTFAVCHL 312 (382)
T ss_pred CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHh--hHHHHHHHHHHHHHHHHHHHH
Confidence 5543 33445566778889999999999999999999999999998888776643 345566667788888888889
Q ss_pred HHHHHhhcccchHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy2962 497 AVYIFSAEQFPTVIRNIGIGAGST-FARVGGIFASYTSVL 535 (690)
Q Consensus 497 ~~~~~~~e~~p~~~r~~~~g~~~~-~~~lg~~i~p~i~~~ 535 (690)
....++.+. |++.|+++.++.+. ...+|.+++|.+.|+
T Consensus 313 ~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~ 351 (382)
T TIGR00902 313 AAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGF 351 (382)
T ss_pred HHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999988 99999999999864 567999999999997
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-22 Score=217.40 Aligned_cols=304 Identities=15% Similarity=0.117 Sum_probs=216.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
..+.|++.+.+.++..+.+++.|+++||+|||++++.+.++.+++.+++.++++++.+++.|++.|++.+...+...+++
T Consensus 45 ~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~ 124 (400)
T PRK11646 45 AVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALV 124 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh--hhchHHHHHHHHHHHHHHHH-HHHhcCchhHHHhcCCHHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV--HDWRHLDILVTLPGLIYLAY-WWFIPESARWLISKGRNEEAKLI 341 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l--~~Wr~~~~i~~i~~ll~~~~-~~~lpesp~~l~~~~~~~ea~~~ 341 (690)
.|++|+++|+++.++......+|..++|.+++.+ .+||+.|++.++..++..+. .+++||.+. .+.
T Consensus 125 ~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-----~~~------ 193 (400)
T PRK11646 125 IKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPAYKL-----STV------ 193 (400)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCcccc-----ccc------
Confidence 9999999999999999999999999999998877 37999999888776655433 344554210 000
Q ss_pred HHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-
Q psy2962 342 IQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNTANL- 420 (690)
Q Consensus 342 l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l- 420 (690)
. ++...++++++++|.++...+..+..+..........+.+.++.
T Consensus 194 ----------------------------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 239 (400)
T PRK11646 194 ----------------------------R------TPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLPIMVNDIA 239 (400)
T ss_pred ----------------------------c------hhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhhhhHHhhc
Confidence 0 00011345667777766544333322222211111222222222
Q ss_pred Cc--hHHHHHHHHHHHHHHHHHHHHHHH-hhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHH
Q psy2962 421 GG--NIYLNFIISGMVEIPAYLSSMLTL-DRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGA 497 (690)
Q Consensus 421 ~~--~~~~~~~~~~l~~i~~~~~~~~l~-dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 497 (690)
+. .......+.++..+.+....+.+. ||++.++.+..+.++.+++.+++...++ .+...+...+.+.+.....+.
T Consensus 240 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~l~~~g~~~~~p~ 317 (400)
T PRK11646 240 GSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSN--LQQLFTLICLFYIGSIIAEPA 317 (400)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHcc
Confidence 21 222333334444444444444444 4566566666666666666665554432 333333444455666666677
Q ss_pred HHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 498 VYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 498 ~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
..++..+..|++.|++++|+.+....+|..++|.+.|+
T Consensus 318 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~ 355 (400)
T PRK11646 318 RETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGW 355 (400)
T ss_pred HHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHH
Confidence 78899999999999999999999999999999999987
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.2e-22 Score=221.18 Aligned_cols=339 Identities=12% Similarity=0.102 Sum_probs=229.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhcccc-----CCcHH-HHHHHHHHHHHHhhhhcc---ccHHHHHHHHHHHHhhhhhh
Q psy2962 186 WYRGTSDAFLMMGVLLGSLIFGDISDRF-----GRKPT-FMISILIMDVFGTLAAFA---PDFWTFTACRLIVGASTSGV 256 (690)
Q Consensus 186 ~~~gli~s~~~lg~~ig~~~~G~lsDr~-----Grr~~-ll~~~~l~~i~~~~~~~s---~s~~~l~~~R~l~G~~~g~~ 256 (690)
.++|.. +.....+ ++.+++|+++||+ |||+. ++++.++.+++..++++. ++++.+.+.+++.|++.+..
T Consensus 47 ~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~ 124 (491)
T PRK11010 47 KTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQ 124 (491)
T ss_pred HHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHH
Confidence 455664 3333333 6889999999999 99885 667777777777777665 47889999999999999999
Q ss_pred HHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh----hchHHHHHHHHHHHHHHHHHHHhcCchhHHHhc
Q psy2962 257 FLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH----DWRHLDILVTLPGLIYLAYWWFIPESARWLISK 332 (690)
Q Consensus 257 ~~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~----~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~ 332 (690)
.+...+++.|++|+++|+++.++...++.+|.++++.++..+. +||..|++.++..++..+..+++||+++..
T Consensus 125 ~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~--- 201 (491)
T PRK11010 125 DIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTI--- 201 (491)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---
Confidence 9999999999999999999999999999999999988877662 699999999988777766666678865310
Q ss_pred CCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHH-HH
Q psy2962 333 GRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLT-YY 411 (690)
Q Consensus 333 ~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~-~~ 411 (690)
.+ ++. .+ +....+++++++++..+...+..++........ .+
T Consensus 202 ~~-~~~-------------------------------~~-----~~~~~~l~~~~~~~~~~~~ll~~~l~~~~~~~~~~~ 244 (491)
T PRK11010 202 PV-PKT-------------------------------LE-----QAVVAPLRDFFGRNNAWLILLLIVLYKLGDAFAMSL 244 (491)
T ss_pred cc-ccc-------------------------------hh-----hhHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000 00 000113455666666555444433333322222 23
Q ss_pred HHhhccCCCCchHH---HHH-HHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHh--cCCChhHHHHHHHH
Q psy2962 412 GLSWNTANLGGNIY---LNF-IISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSAL--LPLDLNTVSIVLAM 485 (690)
Q Consensus 412 ~~~~~~~~l~~~~~---~~~-~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~--~~~~~~~~~~~~~~ 485 (690)
..++..+..+.+.. ... ....+..+++.+++++++||+|+|+.+..+.++.++..+.+.. ....+.+......+
T Consensus 245 ~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~~ 324 (491)
T PRK11010 245 TTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAVF 324 (491)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 33343334453322 222 2334678899999999999999988777666555544433221 11122222233333
Q ss_pred HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCccccccccccccchhhccccC
Q psy2962 486 MGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKT 565 (690)
Q Consensus 486 l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (690)
+..+..+...+..+++..++.|++.+++..|+.+....+|+++++.+.|... +
T Consensus 325 l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~------~--------------------- 377 (491)
T PRK11010 325 FENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFV------E--------------------- 377 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH------H---------------------
Confidence 4334445555667788888888888999999999999999988877777621 1
Q ss_pred CCcchhhccccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHhhhccCC
Q psy2962 566 MPKEQITRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSLILPET 617 (690)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet 617 (690)
..++...|.+.+++++++.+++.+++++
T Consensus 378 ------------------------~~G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 378 ------------------------AHGWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred ------------------------HhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456677888888888887777766654
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-23 Score=225.99 Aligned_cols=323 Identities=18% Similarity=0.218 Sum_probs=234.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
..+.+.+.++|++++++|.+++|.+.||++-.+.+....+++++.+++.+...|++.+++.|++.|+.+++.+|....++
T Consensus 80 ~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~l 159 (495)
T KOG2533|consen 80 GNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAIL 159 (495)
T ss_pred hhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHH
Confidence 67899999999999999999999999999999999999999999998888899999999999999999999999999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---------hhchHHHHHHHHHHHHHH-HHHHHhcCchh--HHHhc
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---------HDWRHLDILVTLPGLIYL-AYWWFIPESAR--WLISK 332 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---------~~Wr~~~~i~~i~~ll~~-~~~~~lpesp~--~l~~~ 332 (690)
+.|+.+++|++.++++.+..++|.++++++++.+ .||||.|++.++++++.. +.++++|+.|. |+..+
T Consensus 160 g~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~ 239 (495)
T KOG2533|consen 160 GNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTD 239 (495)
T ss_pred HhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccch
Confidence 9999999999999999999999999999999983 479999999999988876 45666899886 33322
Q ss_pred CCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHH-HHHH
Q psy2962 333 GRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCS-LTYY 411 (690)
Q Consensus 333 ~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~-~~~~ 411 (690)
.+.+-+ .++..+.+. ....++.+...+++.+++|..|...++.++.+.... +.++
T Consensus 240 ~ek~~~---~~~~~~~~~---------------------~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~ 295 (495)
T KOG2533|consen 240 EEKELV---VERLRESPS---------------------GGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYW 295 (495)
T ss_pred HHHHHH---HHHHHhccC---------------------CCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHH
Confidence 221111 111111010 001111345678899999999999999988888776 4444
Q ss_pred HHhhccCCCC---chHHHHHHHHHHHHHHHHHHHHHHHhh----cCChhHHHHHHHHHHHHH-HHHHhcCCChhHHHHHH
Q psy2962 412 GLSWNTANLG---GNIYLNFIISGMVEIPAYLSSMLTLDR----YGRKNFLCPCLILSGLCL-IVSALLPLDLNTVSIVL 483 (690)
Q Consensus 412 ~~~~~~~~l~---~~~~~~~~~~~l~~i~~~~~~~~l~dr----~grr~~l~~~~~~~~i~~-l~~~~~~~~~~~~~~~~ 483 (690)
.+.+..+..+ .+.........++++++.+++++++|| ..+|......+.+..+.. ..+... .........
T Consensus 296 lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~--~~~~~~~~~ 373 (495)
T KOG2533|consen 296 LPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAA--AVLPGAYGA 373 (495)
T ss_pred HHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh--ccchHHhHH
Confidence 4444444232 234455567788899999999999999 555655555444433333 333332 223333344
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy2962 484 AMMGKFFITGAYGAVYIFSAEQFPTVIRNIGI-GAGSTFARVGGIFASYTS 533 (690)
Q Consensus 484 ~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~-g~~~~~~~lg~~i~p~i~ 533 (690)
.+.+..+.....++....+++......|.... +........+++++|.+.
T Consensus 374 ~~~~~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~ 424 (495)
T KOG2533|consen 374 FLIGPYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLF 424 (495)
T ss_pred HHhcchhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhc
Confidence 44455556666677777777777655554444 444445556666666654
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-21 Score=210.06 Aligned_cols=331 Identities=15% Similarity=0.145 Sum_probs=214.6
Q ss_pred ccchhHHHHHH-HHHHHHHHHHHHhhccccCCcHHH-HHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHH
Q psy2962 185 AWYRGTSDAFL-MMGVLLGSLIFGDISDRFGRKPTF-MISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYV 262 (690)
Q Consensus 185 ~~~~gli~s~~-~lg~~ig~~~~G~lsDr~Grr~~l-l~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~ 262 (690)
..+.|++.+.. .++.+++.++.|+ +||+|||+.+ +.+.++.+++.++.+++++++.+++.+.+.|...+...+....
T Consensus 50 ~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 128 (393)
T PRK15011 50 PAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFA 128 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 57789987665 5566677766666 9999999865 4566666777888889999998877666655555677888888
Q ss_pred HHhhhcCCCcc--hhhhhHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHH-HHHhcCchhHHHhcCCHH
Q psy2962 263 LALEMVGPSKR--IIAGTVIHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAY-WWFIPESARWLISKGRNE 336 (690)
Q Consensus 263 ~i~e~~~~~~R--~~~~~~~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~-~~~lpesp~~l~~~~~~~ 336 (690)
++.++.+++.| +...++.+.+.++|.+++|+++..+. |||..|++.++..++..+. ++++||.++- .+ +
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~----~~-~ 203 (393)
T PRK15011 129 LAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKE----LP-L 203 (393)
T ss_pred HHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCC----Cc-c
Confidence 88888876655 34567888999999999999998884 8999999988877666544 4457776420 00 0
Q ss_pred HHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccC-cHHHHHHHHHHHHHHHHHHH-HHHHh
Q psy2962 337 EAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRH-PNLFKKSVIIFFLWFVCSLT-YYGLS 414 (690)
Q Consensus 337 ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~l~~~~~~~~~~~~-~~~~~ 414 (690)
+ . + ..... .++ +..+.........+...... .+.+.
T Consensus 204 ~--------------------------------~------~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 241 (393)
T PRK15011 204 A--------------------------------T------G-TLEAP---RRNRRDTLLLFVICTLMWGTNSLYIINMPL 241 (393)
T ss_pred c--------------------------------c------c-ccccc---ccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0 00000 011 11222222223333222222 22333
Q ss_pred hccCCCCchH---HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q psy2962 415 WNTANLGGNI---YLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFI 491 (690)
Q Consensus 415 ~~~~~l~~~~---~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~ 491 (690)
+..+.++.+. ........+..+++.++.++++||+|||+.+..+.....+.+...... . ..+..++..++..+..
T Consensus 242 ~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~l~~~~l~~~~~ 319 (393)
T PRK15011 242 FIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMA-H-SPAILLGLQLLNAIYI 319 (393)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-h-hHHHHHHHHHHHHHHH
Confidence 3334444332 233334455667888999999999999988776665555444333322 2 2333344444444555
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCccccccccccccchhhccccCCCcchh
Q psy2962 492 TGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQI 571 (690)
Q Consensus 492 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (690)
+...+....+..|.+|++ |+++.++.+....+|..++|.+.+... +
T Consensus 320 g~~~~~~~~~~~~~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~------~--------------------------- 365 (393)
T PRK15011 320 GILGGIGMLYFQDLMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVA------E--------------------------- 365 (393)
T ss_pred HHHHHHHHHHHHHhCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHH------H---------------------------
Confidence 555566667788999865 899999999999999999999998721 1
Q ss_pred hccccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHhhhccCC
Q psy2962 572 TRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSLILPET 617 (690)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet 617 (690)
..++...+.+.+++.+++.+.++++||+
T Consensus 366 ------------------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (393)
T PRK15011 366 ------------------IWNYHAVFWFALVMIIATLFCLLRIKDV 393 (393)
T ss_pred ------------------HhhhHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 3355667777777777877777777653
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.8e-25 Score=226.22 Aligned_cols=316 Identities=18% Similarity=0.177 Sum_probs=220.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
+...|++++.+++++++.+|++|+++|||.||+++.+|..++.++.++++++..||+++++|.+.|+|.+.+.++++.++
T Consensus 67 ~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~I 146 (493)
T KOG1330|consen 67 DSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLI 146 (493)
T ss_pred chhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHh
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh----hchHHHHHHHHHHHHHHHH-HHHhcCchhHHHhcCCHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH----DWRHLDILVTLPGLIYLAY-WWFIPESARWLISKGRNEEAK 339 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~----~Wr~~~~i~~i~~ll~~~~-~~~lpesp~~l~~~~~~~ea~ 339 (690)
+|.++..+|++++++++.+..+|..+|.+++..+. .|||.|+..++++++..++ .++.+|.+| |..+|..
T Consensus 147 aD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r-----ga~~~~~ 221 (493)
T KOG1330|consen 147 ADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPER-----GARDEVD 221 (493)
T ss_pred hhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccc-----ccccccc
Confidence 99999999999999999999999998888877763 4999999999998887654 455666543 1111100
Q ss_pred HHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHH--------HHHHHH
Q psy2962 340 LIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFV--------CSLTYY 411 (690)
Q Consensus 340 ~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~--------~~~~~~ 411 (690)
. . .+..........+.+.+.|++.+....+......+. ....+|
T Consensus 222 ~----------~------------------~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~ 273 (493)
T KOG1330|consen 222 G----------E------------------NKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYY 273 (493)
T ss_pred c----------C------------------CcCCCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHH
Confidence 0 0 000000111122334445555554444444433332 222232
Q ss_pred HHhhccCCCC-chHHHHHHHHHHHHHHHHHHHHHHHhhcCCh----hHHH-------HHHHHHHHHHHHHHhcCCChhHH
Q psy2962 412 GLSWNTANLG-GNIYLNFIISGMVEIPAYLSSMLTLDRYGRK----NFLC-------PCLILSGLCLIVSALLPLDLNTV 479 (690)
Q Consensus 412 ~~~~~~~~l~-~~~~~~~~~~~l~~i~~~~~~~~l~dr~grr----~~l~-------~~~~~~~i~~l~~~~~~~~~~~~ 479 (690)
...+ .+.. ........+....+++|.+++|.++||+.|+ .... .+..++.....+....+....+.
T Consensus 274 ~~~~--~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~ 351 (493)
T KOG1330|consen 274 SYEL--IGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIF 351 (493)
T ss_pred HHHH--hCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHH
Confidence 2222 1122 2233445566677888999999999984321 1111 12222222233333334444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy2962 480 SIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFAR-VGGIFASYTSVL 535 (690)
Q Consensus 480 ~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~-lg~~i~p~i~~~ 535 (690)
.+++.+++-......+++..-...|+.|++.|.++.++...+.. +|.+-+|++.|.
T Consensus 352 ~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGi 408 (493)
T KOG1330|consen 352 GLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGI 408 (493)
T ss_pred HHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehh
Confidence 56666666666666677777888999999999999999887766 556667767776
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.5e-22 Score=205.07 Aligned_cols=338 Identities=17% Similarity=0.175 Sum_probs=257.4
Q ss_pred ceeeeCCccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhcccc---HHHHHHHHHHHHhhhh
Q psy2962 178 WSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPD---FWTFTACRLIVGASTS 254 (690)
Q Consensus 178 ~~LvC~~~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s---~~~l~~~R~l~G~~~g 254 (690)
++|+ +.|.+++.++..+...+.-++.|.+.||||.|++..++.++..+-.+..+++.+ ++.+++++++.|++ |
T Consensus 44 ~~LS---~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-G 119 (417)
T COG2223 44 FGLS---EGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-G 119 (417)
T ss_pred cCCC---HHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcc-c
Confidence 6665 889999999999999999999999999999999999999999999999998754 45999999999995 5
Q ss_pred hhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---hh---chHHHHHHHHHHHHHHH-HHHHhcCchh
Q psy2962 255 GVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HD---WRHLDILVTLPGLIYLA-YWWFIPESAR 327 (690)
Q Consensus 255 ~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---~~---Wr~~~~i~~i~~ll~~~-~~~~lpesp~ 327 (690)
+.+.+...++++|+||+++|.++|+.. ..++|..+...++..+ .+ ||....+..++.++..+ .++.+.+.|.
T Consensus 120 asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~ 198 (417)
T COG2223 120 ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPE 198 (417)
T ss_pred ceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChh
Confidence 556889999999999999999999998 7777777655555444 14 99998888888777554 4444555543
Q ss_pred HHHhcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCC-ccchhhccCcHHHHHHHHHHHHHH-H
Q psy2962 328 WLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPK-PSIFELFRHPNLFKKSVIIFFLWF-V 405 (690)
Q Consensus 328 ~l~~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~l~~~~~~~-~ 405 (690)
.. ...++.. ..++.++++++.|...+.++..+. .
T Consensus 199 ~r--------------------------------------------~~~~~~~~~~~~~v~~~~~~W~lsllY~~tFG~F 234 (417)
T COG2223 199 HR--------------------------------------------ASVKPQLPAQLKAVFSNKDTWLLSLLYFATFGGF 234 (417)
T ss_pred hh--------------------------------------------ccccccchhHHHHHhcCcchHHHHHHHHHHHHHH
Confidence 10 0001111 345678888999988777766554 3
Q ss_pred HHHHHHHHhhccCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCC-----Chh
Q psy2962 406 CSLTYYGLSWNTANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPL-----DLN 477 (690)
Q Consensus 406 ~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~-----~~~ 477 (690)
..+..+...++.++++.+ .........+.....+.++|+++||+|.++.+...+..+.++..+....+. .+.
T Consensus 235 vgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~ 314 (417)
T COG2223 235 VGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSF 314 (417)
T ss_pred HHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcch
Confidence 444555566667777744 334555666777888999999999999999998888888888877776642 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCccccccccccccc
Q psy2962 478 TVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITK 557 (690)
Q Consensus 478 ~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (690)
+..+...+...++.+......+-++...+|.+ .|.+.|+...++.+|++.-|...+... +
T Consensus 315 ~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~~-~G~v~G~vga~G~lGGf~lp~~~g~~~------~------------- 374 (417)
T COG2223 315 VVFVAVFLALFVFAGLGNGSVFKMIPVIFPKE-TGAVTGIVGAIGGLGGFFLPLAFGVSL------D------------- 374 (417)
T ss_pred HHHHHHHHHHHHHhccCcchheeechHHHHhh-hhHHHHHHHHhccccccchhHHHHHHH------H-------------
Confidence 34444455555777777788888888888864 789999999999999999999988621 1
Q ss_pred hhhccccCCCcchhhccccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHhhhcc
Q psy2962 558 KCLITYKTMPKEQITRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSLILP 615 (690)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lp 615 (690)
....+...|+++..+.+++.++.+.+.
T Consensus 375 -------------------------------~tg~~~~~f~~~~~~~~~a~v~~~~~y 401 (417)
T COG2223 375 -------------------------------LTGSYTGAFMLLLAFYLVALVLTWALY 401 (417)
T ss_pred -------------------------------hcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 144577889999999999988887443
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-22 Score=244.67 Aligned_cols=314 Identities=16% Similarity=0.102 Sum_probs=226.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhh---ccccHHHHHHHHHHHHhhhhhhHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAA---FAPDFWTFTACRLIVGASTSGVFLVAY 261 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~---~s~s~~~l~~~R~l~G~~~g~~~~~~~ 261 (690)
....+++.+++.++++++++++|+++||+|||++++++.++.+++.++.. ++++++.++++|++.|++.+...++..
T Consensus 46 ~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~ 125 (1146)
T PRK08633 46 VILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKY 125 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHH
Confidence 35679999999999999999999999999999999998877666555443 457899999999999999999999999
Q ss_pred HHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhhh------------chHHHHHHHHH-HHHHHHHHHHhcCchhH
Q psy2962 262 VLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHD------------WRHLDILVTLP-GLIYLAYWWFIPESARW 328 (690)
Q Consensus 262 ~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~~------------Wr~~~~i~~i~-~ll~~~~~~~lpesp~~ 328 (690)
+++.|++++++|++++++..++..+|.++++++++++.. |++.+.+..+. .++.+++.+.+||+|++
T Consensus 126 ~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1146)
T PRK08633 126 GIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAA 205 (1146)
T ss_pred hhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCC
Confidence 999999999999999999999999999999999887742 33444333333 33334445567877642
Q ss_pred HHhcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHH
Q psy2962 329 LISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSL 408 (690)
Q Consensus 329 l~~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~ 408 (690)
...+.+.++ . . ........++.+++++.++..++..++.++....
T Consensus 206 ~~~~~~~~~-~------------------------------~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 250 (1146)
T PRK08633 206 APEVFDKKK-Y------------------------------L----FPKLLWRNLKLLRSDRVLWLAIIGLSYFWFISQL 250 (1146)
T ss_pred Ccccccccc-c------------------------------c----cHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 110000000 0 0 0000012345677888777666555555543332
Q ss_pred -HHHHHhhccCCCCc----hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHH
Q psy2962 409 -TYYGLSWNTANLGG----NIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVL 483 (690)
Q Consensus 409 -~~~~~~~~~~~l~~----~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~ 483 (690)
..+.+.+....++. ...+.....+++.+++.++.+++.||+++++.+.++.++.+++++++.+.. +.+..++.
T Consensus 251 ~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 328 (1146)
T PRK08633 251 AQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP--SLASVLVL 328 (1146)
T ss_pred HHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh--hHHHHHHH
Confidence 22333333333442 234555666777888999999999999998888887777777766665543 24445555
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 484 AMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 484 ~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
.++.+++.++..+...+++.+..|++.||+++|+.+++..+|.++++.+.+.
T Consensus 329 ~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~ 380 (1146)
T PRK08633 329 FFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTL 380 (1146)
T ss_pred HHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777778888999999999999999999999999999888877665
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-21 Score=205.55 Aligned_cols=303 Identities=14% Similarity=0.013 Sum_probs=211.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCc----HHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRK----PTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVA 260 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr----~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~ 260 (690)
..++|++.+++.++..++++++|+++||+||| +.+.+...+. .......+++++.+++.|++.|++.+...+..
T Consensus 38 ~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~ 115 (382)
T PRK11128 38 PETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFSPLVPLT 115 (382)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHHcccccHH
Confidence 68999999999999999999999999999994 3333222221 22334456889999999999999999888988
Q ss_pred HHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHHhcCchhHHHhcCCHHH
Q psy2962 261 YVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEE 337 (690)
Q Consensus 261 ~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~~~~e 337 (690)
.+++.++ .++|+++.+....+.++|.+++|++++++. +||..|++.++..++..+...+.||.++ +++
T Consensus 116 ~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~----~~~--- 186 (382)
T PRK11128 116 DALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQLLRPTIMP----QGE--- 186 (382)
T ss_pred HHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHccCCCCC----ccc---
Confidence 8888877 456888889999999999999999999873 7999998877654444433333444211 000
Q ss_pred HHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2962 338 AKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNT 417 (690)
Q Consensus 338 a~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 417 (690)
++ +..++...++++++|+|.++...+..++.+......+.....+.
T Consensus 187 --------------------------------~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 232 (382)
T PRK11128 187 --------------------------------SR--QQESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYW 232 (382)
T ss_pred --------------------------------cc--cccccccchHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 00 00011133577889999888776665555444322222222222
Q ss_pred CCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Q psy2962 418 ANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGA 494 (690)
Q Consensus 418 ~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 494 (690)
.+.+.+ ......+..+.+++..++.+++.||+++|+.+..+.++.++..+++...+ +.+..++..++.+++.+..
T Consensus 233 ~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~ 310 (382)
T PRK11128 233 QAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTT--ALPWLIVIQILHCGTFTVC 310 (382)
T ss_pred HHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHH
Confidence 334432 34444455677888889999999999999999888888887766655443 3555555666677777777
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q psy2962 495 YGAVYIFSAEQFPTVIRNIGIGAGS-TFARVGGIFASYTSVL 535 (690)
Q Consensus 495 ~~~~~~~~~e~~p~~~r~~~~g~~~-~~~~lg~~i~p~i~~~ 535 (690)
.+....+..+. +++.+++..++.+ ....+|..++|.+.|.
T Consensus 311 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~ 351 (382)
T PRK11128 311 HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGF 351 (382)
T ss_pred HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777888777 4555788888886 4456777899999987
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.4e-21 Score=206.63 Aligned_cols=304 Identities=14% Similarity=0.131 Sum_probs=204.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcccc-----CCcH-HHHHHHHHHHHHHhhhhcc---ccHHHHHHHHHHHHhhhhh
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRF-----GRKP-TFMISILIMDVFGTLAAFA---PDFWTFTACRLIVGASTSG 255 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~-----Grr~-~ll~~~~l~~i~~~~~~~s---~s~~~l~~~R~l~G~~~g~ 255 (690)
..++|++..+... .+..+++|+++||+ |||+ .++++.++.+++..+.++. .+++.+++..++.|+..+.
T Consensus 33 ~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 110 (402)
T PRK11902 33 IQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSAS 110 (402)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHH
Confidence 5789999777776 68899999999999 8875 7888888888877777776 3577888888888998999
Q ss_pred hHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh----hhchHHHHHHHHHHHHHHHHHHHhcCchhHHHh
Q psy2962 256 VFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV----HDWRHLDILVTLPGLIYLAYWWFIPESARWLIS 331 (690)
Q Consensus 256 ~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l----~~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~ 331 (690)
..++..+++.|++|+++|+++.++...+..+|.++++.++..+ .+||..|++.++..++..+..+++||+++..
T Consensus 111 ~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~-- 188 (402)
T PRK11902 111 QDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTTLWAPEPEVPA-- 188 (402)
T ss_pred HHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc--
Confidence 9999999999999999999999999999999999998877765 2799999998887766655556677764310
Q ss_pred cCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHH-H
Q psy2962 332 KGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLT-Y 410 (690)
Q Consensus 332 ~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~-~ 410 (690)
++.++. . ++...++++++|+|.++...+..++........ .
T Consensus 189 -~~~~~~-------------------------------~------~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~ 230 (402)
T PRK11902 189 -RPPRSL-------------------------------G------EAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFAGS 230 (402)
T ss_pred -cccchh-------------------------------H------HHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHHHH
Confidence 000000 0 001123567788888776655544443322221 1
Q ss_pred HHHhhccCCCCchHHHHHH---HHH-HHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHH---hcCCChhHHHHHH
Q psy2962 411 YGLSWNTANLGGNIYLNFI---ISG-MVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSA---LLPLDLNTVSIVL 483 (690)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~---~~~-l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~---~~~~~~~~~~~~~ 483 (690)
+...+..+..+.+...... ..+ +.++++.++++++.||+|+|+.+..+.++..+..+.+. ..++ ..+.....
T Consensus 231 ~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~-~~~~~~~~ 309 (402)
T PRK11902 231 LSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPK-HLWTMALA 309 (402)
T ss_pred HHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC-cHHHHHHH
Confidence 2223334445543332222 223 35788999999999999999888776666555544332 2222 23333333
Q ss_pred H----HHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 484 A----MMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 484 ~----~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
. +..++..+........++.+.+|.+.+ ++.+....+|.++++.+.|.
T Consensus 310 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~ 361 (402)
T PRK11902 310 IGIENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGY 361 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 2 234455566677778888888886654 44444455666555555654
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-21 Score=211.11 Aligned_cols=310 Identities=17% Similarity=0.189 Sum_probs=221.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccc----cCC-cHHHHHHHHHHHHHHhhhhcccc------HHHHHHHHHHHHhhh
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDR----FGR-KPTFMISILIMDVFGTLAAFAPD------FWTFTACRLIVGAST 253 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr----~Gr-r~~ll~~~~l~~i~~~~~~~s~s------~~~l~~~R~l~G~~~ 253 (690)
+.+.|++.++..+..++..++.|+++|| +|| |+.++.+.+..+++.+++.+.++ ...+++.+++.+++.
T Consensus 34 ~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (437)
T TIGR00792 34 AAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFY 113 (437)
T ss_pred HHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999998 687 45777888888888888777654 456778889999988
Q ss_pred hhhHHHHHHHHhhhc-CCCcchhhhhHHHHHHHHHHHHHHHHHHHh----------hhchHHHHHHHHHHHHHHHH-HHH
Q psy2962 254 SGVFLVAYVLALEMV-GPSKRIIAGTVIHMFFSIGFLLIAGLAYFV----------HDWRHLDILVTLPGLIYLAY-WWF 321 (690)
Q Consensus 254 g~~~~~~~~~i~e~~-~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l----------~~Wr~~~~i~~i~~ll~~~~-~~~ 321 (690)
+...+...++..|.. ++++|++..++.+.+..+|.++++.+...+ .+||+.+++.++++++..+. ++.
T Consensus 114 ~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~ 193 (437)
T TIGR00792 114 SFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFG 193 (437)
T ss_pred HhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcC
Confidence 888888888899987 468899999999888888877665543322 26999999888887766544 344
Q ss_pred hcCchhHHHhcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHH
Q psy2962 322 IPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFF 401 (690)
Q Consensus 322 lpesp~~l~~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 401 (690)
++|.++. +.+ + +.++......++.++++|.++...+..++
T Consensus 194 ~~e~~~~-----~~~---------------------------------~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 233 (437)
T TIGR00792 194 TKERYSE-----IPK---------------------------------N--IEKKLSLKQIFKALFKNDQLLILCLAYLF 233 (437)
T ss_pred CEecCCC-----CCc---------------------------------c--cccCCCHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5664310 000 0 00000112235677888888776666555
Q ss_pred HHHHHHHHHHHHhhccC-CCCc--hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhH
Q psy2962 402 LWFVCSLTYYGLSWNTA-NLGG--NIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNT 478 (690)
Q Consensus 402 ~~~~~~~~~~~~~~~~~-~l~~--~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~ 478 (690)
.++..........++.+ .++. .......+..+..+++.++.+++.||+|+|+.+..+.++.+++.+.+.+.+ +..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 312 (437)
T TIGR00792 234 YNLAFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG-SNLP 312 (437)
T ss_pred HHHHHHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc-hhHH
Confidence 55544333222233222 2221 222334455677888999999999999999999988888877777666554 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 479 VSIVLAMMGKFFITGAYGAVYIFSAEQFP-------TVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 479 ~~~~~~~l~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
...+..++.+++.+...+..+++.+|..+ .+.+|.+.|+.+++..+|..+++.+.+.
T Consensus 313 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ 376 (437)
T TIGR00792 313 LILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGL 376 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566778888888888888888865 4557999999999999999999999886
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=195.80 Aligned_cols=321 Identities=17% Similarity=0.206 Sum_probs=203.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
....|.+.|.|++++.+.++.+|.++||+|||++++++++..++..++.+++.|+..+++.|++.|+.-|.. ..+.+++
T Consensus 67 ~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl-~v~rAii 145 (451)
T KOG2615|consen 67 VFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNL-SVIRAII 145 (451)
T ss_pred chhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch-HHHHHHH
Confidence 577899999999999999999999999999999999999999999999999999977778899999977765 6788999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhhhc-----hHHH----HHHHHHHHH-HHHHHHHhcCchhHHHhcCC
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHDW-----RHLD----ILVTLPGLI-YLAYWWFIPESARWLISKGR 334 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~~W-----r~~~----~i~~i~~ll-~~~~~~~lpesp~~l~~~~~ 334 (690)
+|++++|+|+++++.++..+++|.++||.+|+++... +..| ++..+.+.. ...+.|++||+-+ .+++
T Consensus 146 sdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~---~rk~ 222 (451)
T KOG2615|consen 146 SDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLP---LRKR 222 (451)
T ss_pred HhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcccc---chhh
Confidence 9999999999999999999999999999999998541 1122 222233333 4456788999832 1221
Q ss_pred HHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHH-------HHHHHHHHHHHHH
Q psy2962 335 NEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFK-------KSVIIFFLWFVCS 407 (690)
Q Consensus 335 ~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~l~~~~~~~~~~ 407 (690)
.+|+... ++.+ + .+ ....+.....-..++|++.... ..+..++..+...
T Consensus 223 ~~~~~~~-~~~~----------------~------~~-~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s 278 (451)
T KOG2615|consen 223 NDEHSTL-QEAA----------------D------DR-LALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFS 278 (451)
T ss_pred cccccch-hhhh----------------h------hh-hhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHH
Confidence 1111100 0000 0 00 0000000000112334433332 2222222222222
Q ss_pred HHH-HHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----hhHHHHHHHHHHHHHHHHHhcCCChhHHHH
Q psy2962 408 LTY-YGLSWNTANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGR-----KNFLCPCLILSGLCLIVSALLPLDLNTVSI 481 (690)
Q Consensus 408 ~~~-~~~~~~~~~l~~~~~~~~~~~~l~~i~~~~~~~~l~dr~gr-----r~~l~~~~~~~~i~~l~~~~~~~~~~~~~~ 481 (690)
..- +...+....++.+.....-+....++.+.++.+.+..+..| +..+...+.++.-..+++..... +....
T Consensus 279 ~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~~--~~~l~ 356 (451)
T KOG2615|consen 279 GLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLART--PVVLY 356 (451)
T ss_pred HHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcccc--chhhh
Confidence 222 22223245566444433333333344444444444444433 33344444444433444433322 22333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 482 VLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 482 ~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
....+..+......+....+.....|.+.||++.|+....+.++-++||.+.|.
T Consensus 357 ~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~ 410 (451)
T KOG2615|consen 357 LGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGV 410 (451)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhhe
Confidence 344455566666667788889999999999999999999999999999999875
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-21 Score=236.63 Aligned_cols=313 Identities=10% Similarity=0.005 Sum_probs=224.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHH---HHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHH
Q psy2962 186 WYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMI---SILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYV 262 (690)
Q Consensus 186 ~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~---~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~ 262 (690)
...++..++++++++++++++|+++||+|||+++.. ..++.++..++....++++.++++|+++|++.+...++..+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a 131 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYS 131 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHH
Confidence 568899999999999999999999999999997533 22333333333344589999999999999999999999999
Q ss_pred HHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHHHHHHHhcCchhHHHhcCCHHHHH
Q psy2962 263 LALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAK 339 (690)
Q Consensus 263 ~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---~~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~~~~ea~ 339 (690)
++.+++++++|++++++.+++.++|.+++|++++++ .+|++.|++.++..++.++.++++|+++.- .++...
T Consensus 132 ~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--- 206 (1140)
T PRK06814 132 ILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTGNA--APDLKI--- 206 (1140)
T ss_pred hhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCCCC--CCCCee---
Confidence 999999999999999999999999999999999988 479998855555555556666667765320 000000
Q ss_pred HHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHH-HHHHhhccC
Q psy2962 340 LIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLT-YYGLSWNTA 418 (690)
Q Consensus 340 ~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~ 418 (690)
... . . +.....++.+.+++.++...+..++.++..... .+.+.+..+
T Consensus 207 --------------~~~-----------~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 254 (1140)
T PRK06814 207 --------------DRN-----------I-I------RSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKE 254 (1140)
T ss_pred --------------ccc-----------h-H------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 000 0 0 000124566778888888777666666544333 344444444
Q ss_pred CCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhc------------------CCChh
Q psy2962 419 NLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALL------------------PLDLN 477 (690)
Q Consensus 419 ~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~------------------~~~~~ 477 (690)
.++.+ ........+++.++|.++.+++.++.++++.+..+.++.+++.+.+.+. .....
T Consensus 255 ~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (1140)
T PRK06814 255 TLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHG 334 (1140)
T ss_pred HcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhccccc
Confidence 45533 3455566677888999999999988776665555555544444433331 11234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 478 TVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 478 ~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
|..++..++.+++.+...+...+++.+..|++.||+++|+.+++..+|..+++.+.+.
T Consensus 335 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~ 392 (1140)
T PRK06814 335 WRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILAL 392 (1140)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666777777778889999999999999999999999999999999998876
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=214.17 Aligned_cols=375 Identities=16% Similarity=0.154 Sum_probs=265.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHH-HHHHHhhhhhhHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTAC-RLIVGASTSGVFLVAYVL 263 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~-R~l~G~~~g~~~~~~~~~ 263 (690)
..+++|+.++.+....+.+++.+.+.||||.|++.++|.++..++.++.+|++++|.+++. -++.|+|.|..+..+.++
T Consensus 80 ~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paivi 159 (509)
T KOG2504|consen 80 SSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVI 159 (509)
T ss_pred ccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhh
Confidence 4569999999999999999999999999999999999999999999999999999887655 688899999999999999
Q ss_pred HhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHHHHHHHhcC-chhHHHhcCCHHHHH
Q psy2962 264 ALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDILVTLPGLIYLAYWWFIPE-SARWLISKGRNEEAK 339 (690)
Q Consensus 264 i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---~~Wr~~~~i~~i~~ll~~~~~~~lpe-sp~~l~~~~~~~ea~ 339 (690)
+..|+ +|+|+++.|+...+.++|.++.|.+.-.+ .|||+.+++.+.+.+-.++....+.+ +++- .+. .++..
T Consensus 160 v~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~--~~~-~~~~~ 235 (509)
T KOG2504|consen 160 LGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPK--KPN-EEKDL 235 (509)
T ss_pred hhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCC--Cch-hhhhh
Confidence 99887 68999999999999999999988887776 48999999988887666655554433 3221 011 00000
Q ss_pred HHHHHHHHHcCCcchhhhhhcccCCC-----chHH-HHhhhhcC--CCCccc----hhhccCcHHHHHHHHHHHHHHHHH
Q psy2962 340 LIIQAVAEENKVILEGFVLDGLLAPS-----PEEE-EKLKAQND--GPKPSI----FELFRHPNLFKKSVIIFFLWFVCS 407 (690)
Q Consensus 340 ~~l~~~~~~n~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~--~~~~~~----~~l~~~~~~~~~~l~~~~~~~~~~ 407 (690)
+...................+..... .... ++.+.+.. ..+... .++++++.++...+...+..+...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~ 315 (509)
T KOG2504|consen 236 RNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYLGFN 315 (509)
T ss_pred ccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHHHHH
Confidence 00000000000000000000000000 0000 00000001 111222 578898877776666666555554
Q ss_pred HHHHHHhhccCCCC---chHHHHHHHHHHHHHHHHHHHHHHHhhcC--ChhHHHHHHHHHHHHHHHHHhcCCChhHHHHH
Q psy2962 408 LTYYGLSWNTANLG---GNIYLNFIISGMVEIPAYLSSMLTLDRYG--RKNFLCPCLILSGLCLIVSALLPLDLNTVSIV 482 (690)
Q Consensus 408 ~~~~~~~~~~~~l~---~~~~~~~~~~~l~~i~~~~~~~~l~dr~g--rr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~ 482 (690)
..++.++.+....+ .+......+.++..++++++.|++.|+.. ++....++.++.+++.+.+++..+ .+..+.
T Consensus 316 ~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~--~~~l~~ 393 (509)
T KOG2504|consen 316 VPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATT--YVGLIV 393 (509)
T ss_pred HHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhcc--HHHHHH
Confidence 44444444444555 34556677888999999999999999987 445556666777777655555543 456667
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCccccccccccccchhhcc
Q psy2962 483 LAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLIT 562 (690)
Q Consensus 483 ~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (690)
..++.+++.+.........+.|+.+.+.-..+.|+..++..++.+++|.+.++.. +
T Consensus 394 ~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~------d------------------ 449 (509)
T KOG2504|consen 394 FSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLY------D------------------ 449 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeee------e------------------
Confidence 7777888888888888889999999999999999999999999999999988621 1
Q ss_pred ccCCCcchhhccccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHhhhcc
Q psy2962 563 YKTMPKEQITRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSLILP 615 (690)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lp 615 (690)
. ..++...|...+++.++++++.++.|
T Consensus 450 --------------------~------tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 450 --------------------I------TGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred --------------------c------cCCeeeehhhcChHHHHHHHHHHHhH
Confidence 1 44578889999999999998888777
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-21 Score=204.21 Aligned_cols=297 Identities=13% Similarity=0.042 Sum_probs=204.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcccc-----CCcHH-HHHHHHHHHHHHhhhhcc---ccHHHHHHHHHHHHhhhhh
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRF-----GRKPT-FMISILIMDVFGTLAAFA---PDFWTFTACRLIVGASTSG 255 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~-----Grr~~-ll~~~~l~~i~~~~~~~s---~s~~~l~~~R~l~G~~~g~ 255 (690)
..+.|+..++ .+...+ .+++|+++||+ ||||. ++.+.++.++..++.++. .+.+.+.+..++.|++.+.
T Consensus 22 ~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~ 99 (356)
T TIGR00901 22 LKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSAT 99 (356)
T ss_pred HHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHH
Confidence 4678888655 444454 89999999998 89886 567777777777777776 4666777888888999999
Q ss_pred hHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---hh--------chHHHHHHHHHHHHHHHHHHH-hc
Q psy2962 256 VFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HD--------WRHLDILVTLPGLIYLAYWWF-IP 323 (690)
Q Consensus 256 ~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---~~--------Wr~~~~i~~i~~ll~~~~~~~-lp 323 (690)
..++..+++.|++|+++|+++.++...+..+|.++++.++..+ .+ ||..|++.++..++..+..++ .|
T Consensus 100 ~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~ 179 (356)
T TIGR00901 100 QDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAK 179 (356)
T ss_pred HHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999998766 25 999999999887776655443 56
Q ss_pred CchhHHHhcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcH---HHHHHHHHH
Q psy2962 324 ESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPN---LFKKSVIIF 400 (690)
Q Consensus 324 esp~~l~~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~l~~~ 400 (690)
|+++. +.+.++ ... +....++++++++. ++...+..+
T Consensus 180 e~~~~---~~~~~~--------------------------------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (356)
T TIGR00901 180 EPQED---ASVPKP--------------------------------LTQ-----AVLKPIREFFQRKNMIQALLLLLLIV 219 (356)
T ss_pred CCCcc---cccchh--------------------------------HHH-----HHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 64320 000000 000 00112345556554 443333333
Q ss_pred HHHHHHHHHHHHHhhccCCCCchHHH---HHHHHH-HHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcC-C-
Q psy2962 401 FLWFVCSLTYYGLSWNTANLGGNIYL---NFIISG-MVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLP-L- 474 (690)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~-l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~-~- 474 (690)
+..+.....+...+.+..+.+.+... .....+ +..+++.++++++.||+|||+.+..+.++.++...+..+.. .
T Consensus 220 ~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~ 299 (356)
T TIGR00901 220 LYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNG 299 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33333333322222222225533332 233333 45678999999999999999998888887777666554431 1
Q ss_pred -------ChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q psy2962 475 -------DLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFAR 523 (690)
Q Consensus 475 -------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ 523 (690)
...+......++.+++.+...+...++..|.+|++.||+.+|+.+...+
T Consensus 300 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 300 HHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred cccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 1234444555666788888999999999999999999999999887654
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.88 E-value=9e-20 Score=200.31 Aligned_cols=423 Identities=16% Similarity=0.062 Sum_probs=252.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHHh
Q psy2962 186 WYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLAL 265 (690)
Q Consensus 186 ~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i~ 265 (690)
...+|+.+.+.++..++.++.|.++|.||||.+++.+.++..+|.++++-++|...++++..+.|+|.|.... ....++
T Consensus 78 ~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~is 156 (599)
T PF06609_consen 78 DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAIS 156 (599)
T ss_pred ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHH
Confidence 4567888999999999999999999999999999999999999999999999999999999999999877764 456689
Q ss_pred hhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHHHHHHHhcCchhHHHhcCC---HHHHH
Q psy2962 266 EMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGR---NEEAK 339 (690)
Q Consensus 266 e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---~~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~~---~~ea~ 339 (690)
|..|.|+|.....+......+...+++.++..+ .+|||.|++.++...+.++..++....|++-..+++ ..+..
T Consensus 157 El~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l 236 (599)
T PF06609_consen 157 ELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQL 236 (599)
T ss_pred HhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHH
Confidence 999999998887777666656555677777655 479999999888765554332222222333222221 22333
Q ss_pred HHHHHHHH-------------Hc--C----CcchhhhhhcccCCCchHHHHhhhhc--C-CCCccchhhccCcH-HHHHH
Q psy2962 340 LIIQAVAE-------------EN--K----VILEGFVLDGLLAPSPEEEEKLKAQN--D-GPKPSIFELFRHPN-LFKKS 396 (690)
Q Consensus 340 ~~l~~~~~-------------~n--~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~l~~~~~-~~~~~ 396 (690)
+.++.+.- .+ + ...+...+..+.........-.-.+. . +...-..+++|+++ +...+
T Consensus 237 ~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~l 316 (599)
T PF06609_consen 237 KELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALL 316 (599)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHH
Confidence 33333221 11 0 11111111100000000000000111 1 12223356888743 32222
Q ss_pred HHHHHHHH-HHHHHHHHHhhccCCCCc------hHHHHHHHHHHHHHHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHH
Q psy2962 397 VIIFFLWF-VCSLTYYGLSWNTANLGG------NIYLNFIISGMVEIPAYLSSMLTLDRYGR-KNFLCPCLILSGLCLIV 468 (690)
Q Consensus 397 l~~~~~~~-~~~~~~~~~~~~~~~l~~------~~~~~~~~~~l~~i~~~~~~~~l~dr~gr-r~~l~~~~~~~~i~~l~ 468 (690)
++.++... .....++.+......++. .........+++...+.++.+.+..+++| |+.++++.+++.+++.+
T Consensus 317 vi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Ga 396 (599)
T PF06609_consen 317 VISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGA 396 (599)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHH
Confidence 22222111 122222222211111111 23344555667777888888999988887 45555666666666555
Q ss_pred HHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCcccc
Q psy2962 469 SALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFE 548 (690)
Q Consensus 469 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~ 548 (690)
+.....++....+.+.++.+++.+.......+.+.-..|++..+++.|+..++..+|+.++..+..-+- .+-
T Consensus 397 ma~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~------~n~-- 468 (599)
T PF06609_consen 397 MAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF------TNK-- 468 (599)
T ss_pred HHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH------Hhh--
Confidence 555533334445666778888888888888888888899999999999999999999999887765310 000
Q ss_pred cccccccc-chhhccccCCCcchh----------------hccccchhhhhhhhhhh---hcccchhhHHHHHHHHHHHH
Q psy2962 549 YYNSSTIT-KKCLITYKTMPKEQI----------------TRYGVTVILIDQVFLLQ---VEIWLPLPFLMFGVLSLTAG 608 (690)
Q Consensus 549 ~~~~~~~~-~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~ 608 (690)
+...... -.......++|+... ..=|.+.+.++.+.... ....+...++....+.+++.
T Consensus 469 -~~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~~A~~~aYa~ay~~V~~~siaFG~vai 547 (599)
T PF06609_consen 469 -LPKELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVVAAFQEAYAHAYRYVYYSSIAFGVVAI 547 (599)
T ss_pred -hhHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000001 011222233333211 11244555554332221 12345677777777888888
Q ss_pred HHhhhccCCC
Q psy2962 609 ILSLILPETH 618 (690)
Q Consensus 609 ~~~~~lpet~ 618 (690)
++++++++.+
T Consensus 548 iaa~fl~d~~ 557 (599)
T PF06609_consen 548 IAALFLGDID 557 (599)
T ss_pred HHHHHcCChH
Confidence 8888888765
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=205.51 Aligned_cols=311 Identities=14% Similarity=0.054 Sum_probs=194.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhh---cccc-----HHHHHHHHHHHHhhhhhh
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAA---FAPD-----FWTFTACRLIVGASTSGV 256 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~---~s~s-----~~~l~~~R~l~G~~~g~~ 256 (690)
..+.|++.+++.++..++++++|+++||+|||++++++..+.+++..... .++. ....++++++.|.+....
T Consensus 45 ~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (420)
T PRK09528 45 GTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAG 124 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 67899999999999999999999999999999999887666554433211 1111 111222333334333333
Q ss_pred HHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh--hchHHHHHHHHHHHHHHHHHHHhc-CchhHHHhcC
Q psy2962 257 FLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH--DWRHLDILVTLPGLIYLAYWWFIP-ESARWLISKG 333 (690)
Q Consensus 257 ~~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~--~Wr~~~~i~~i~~ll~~~~~~~lp-esp~~l~~~~ 333 (690)
.+....+..+. .+++++..+......++|..+++.+++.+. +|++.|++.++..++.++..++++ |.++-
T Consensus 125 ~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~----- 197 (420)
T PRK09528 125 AGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFFAKPDAPST----- 197 (420)
T ss_pred hhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhcccccccch-----
Confidence 33333333222 345677888888888999999999888773 799999998888776665555543 32210
Q ss_pred CHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHH-----H
Q psy2962 334 RNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCS-----L 408 (690)
Q Consensus 334 ~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~-----~ 408 (690)
++.++ ++.+.+.+......++++|+|.++...+..+....... .
T Consensus 198 --~~~~~-----------------------------~~~~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~ 246 (420)
T PRK09528 198 --AKVAN-----------------------------ALGANASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVFDQQF 246 (420)
T ss_pred --hhhcc-----------------------------chhcccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHHHHHH
Confidence 00000 00000000111223456777776654443333322111 1
Q ss_pred HHHHHhhccC-CCC-chHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHH
Q psy2962 409 TYYGLSWNTA-NLG-GNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMM 486 (690)
Q Consensus 409 ~~~~~~~~~~-~l~-~~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l 486 (690)
..|....... ..+ ........+..+.++++.++.+++.||+|||+.+..+.++.++..+++.+.++ .+..+....+
T Consensus 247 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~--~~~~~~~~~l 324 (420)
T PRK09528 247 PNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATG--PLEVSILKLL 324 (420)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhccc--HHHHHHHHHH
Confidence 1222222111 122 12234455566778899999999999999999988888888877777665433 4444444555
Q ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy2962 487 GKFFITGAYGAVYIFSAEQFPTVIRNIGIGA-GSTFARVGGIFASYTSVL 535 (690)
Q Consensus 487 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~-~~~~~~lg~~i~p~i~~~ 535 (690)
.+++..........+..|.+|++.|++..+. .++...+|.+++|.+.|+
T Consensus 325 ~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~ 374 (420)
T PRK09528 325 HAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGN 374 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHH
Confidence 5566666666677888999999999888766 577788999999999987
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-20 Score=199.83 Aligned_cols=311 Identities=16% Similarity=0.089 Sum_probs=205.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhh---hccc-----cHHHHHHHHHHHHhhhhhh
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLA---AFAP-----DFWTFTACRLIVGASTSGV 256 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~---~~s~-----s~~~l~~~R~l~G~~~g~~ 256 (690)
..+.|++.+++.++..+++++.|+++||+|||+.++.+.+..+++.... .+.+ .+..+++.|++.|++.+..
T Consensus 37 ~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 116 (396)
T TIGR00882 37 KTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAG 116 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6789999999999999999999999999999999988776665544322 2222 2334567788899988888
Q ss_pred HHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh--hhchHHHHHHHHHHHHHHHHHHHh-cCchhHHHhcC
Q psy2962 257 FLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV--HDWRHLDILVTLPGLIYLAYWWFI-PESARWLISKG 333 (690)
Q Consensus 257 ~~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l--~~Wr~~~~i~~i~~ll~~~~~~~l-pesp~~l~~~~ 333 (690)
.+....+..+.. ++++...+......++|.++++.+++.+ .+||..|++.++..++..+..+.. ||+|+.
T Consensus 117 ~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~----- 189 (396)
T TIGR00882 117 AGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMFAKPKAPSS----- 189 (396)
T ss_pred hhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHhCCCCchh-----
Confidence 888888777753 3345566777777788888888888776 379999999888877766555443 443320
Q ss_pred CHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHH----
Q psy2962 334 RNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLT---- 409 (690)
Q Consensus 334 ~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~---- 409 (690)
++.++ + .+ ..+.+.+..+.++++|+|.++...+..+.........
T Consensus 190 --~~~~~--------~--------------------~~-~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~ 238 (396)
T TIGR00882 190 --ATVAN--------A--------------------LG-ANASAFSLKLALELFRQRKFWMFVLYVVGVACVYDVFDQQF 238 (396)
T ss_pred --hhhhc--------c--------------------cc-cccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0 00 0000111234567888888766555444333322211
Q ss_pred -HHHHhhccC-CCC-chHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHH
Q psy2962 410 -YYGLSWNTA-NLG-GNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMM 486 (690)
Q Consensus 410 -~~~~~~~~~-~l~-~~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l 486 (690)
.|...+... ..+ ........+..+.++++.+..+++.||+|||+.+.++.++.++...+....+ +.+..+...++
T Consensus 239 ~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~--~~~~~~~~~~l 316 (396)
T TIGR00882 239 ANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFAT--TALEVVILKML 316 (396)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHH
Confidence 122121111 112 1234445566677888889999999999999999888887777666555433 24444444555
Q ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy2962 487 GKFFITGAYGAVYIFSAEQFPTVIRNIGIGA-GSTFARVGGIFASYTSVL 535 (690)
Q Consensus 487 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~-~~~~~~lg~~i~p~i~~~ 535 (690)
.+++..........+..+..|++.++++.+. .+....+|++++|.+.|+
T Consensus 317 ~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~ 366 (396)
T TIGR00882 317 HAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGN 366 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHH
Confidence 5555555555666677888888888887766 577889999999999987
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-20 Score=196.94 Aligned_cols=333 Identities=12% Similarity=0.018 Sum_probs=205.1
Q ss_pred ccc-hhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2962 185 AWY-RGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVL 263 (690)
Q Consensus 185 ~~~-~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~ 263 (690)
+.+ .|.+.++++.+++++.++.|+++||+|.|+++.++.+.+++..++.++++++..+.+.|++.|++.|+.+ +...+
T Consensus 60 ~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~sy 138 (511)
T TIGR00806 60 EETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSY 138 (511)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 566 8999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh--hchHHHH---HHHHHHHHHHHHHHHhcCchhHHHhcCCHHHH
Q psy2962 264 ALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH--DWRHLDI---LVTLPGLIYLAYWWFIPESARWLISKGRNEEA 338 (690)
Q Consensus 264 i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~--~Wr~~~~---i~~i~~ll~~~~~~~lpesp~~l~~~~~~~ea 338 (690)
+..|+|+++|+++.++...+..+|.+++++++.++. |||+.+. +......+.++..+++|..+|-+.-+.+.+.-
T Consensus 139 I~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~ 218 (511)
T TIGR00806 139 IFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVR 218 (511)
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccc
Confidence 999999999999999999999999999999988763 7887443 33333444456667788666544443321100
Q ss_pred HHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHH-HHHHHHHHhhcc
Q psy2962 339 KLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFV-CSLTYYGLSWNT 417 (690)
Q Consensus 339 ~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~ 417 (690)
. ..+...+...+++. . ......+......-..-...+++..+++.+.+-.+-..+.... ....+|...++.
T Consensus 219 ~----~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~ 290 (511)
T TIGR00806 219 G----ALPCELDQMVPGPG-G---KLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWG 290 (511)
T ss_pred c----ccccccccCCCCCc-c---ccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 0 00000000000000 0 0000000000000000112334455666544333322222221 222233333221
Q ss_pred CCCC-chHHHHHH---HHHHHHHHHHHHHHHHHhhcCChhHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q psy2962 418 ANLG-GNIYLNFI---ISGMVEIPAYLSSMLTLDRYGRKNFLCPC--LILSGLCLIVSALLPLDLNTVSIVLAMMGKFFI 491 (690)
Q Consensus 418 ~~l~-~~~~~~~~---~~~l~~i~~~~~~~~l~dr~grr~~l~~~--~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~ 491 (690)
..-. .+. .+.. +..+.+.++.++.|++-.++.+...+.++ .++.+..++++. ...+.|+..+..++++..+
T Consensus 291 ~v~~~~~~-yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~--~t~~Iw~~Y~~yvlf~~~y 367 (511)
T TIGR00806 291 TLDESLNK-YNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMS--QSHDIWVLYVTYVLFRGIY 367 (511)
T ss_pred HcCCCccc-cCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhh--cccchHHHHHHHHHHHHHH
Confidence 1111 111 2322 33344455667777774444332222222 223332222222 3345778888888888888
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHH
Q psy2962 492 TGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFA 529 (690)
Q Consensus 492 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~ 529 (690)
....++...-++.....+.-|..+|+.++++-+-..+-
T Consensus 368 ~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtil 405 (511)
T TIGR00806 368 QFLVPIATFQIASSLSKELCALVFGINTFVATALKTII 405 (511)
T ss_pred HHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHhe
Confidence 88888887777777776666888888877766555443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-19 Score=198.53 Aligned_cols=312 Identities=16% Similarity=0.105 Sum_probs=228.3
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhc-----cccHHHHHHHHHHHHhhhhhhH
Q psy2962 183 DKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAF-----APDFWTFTACRLIVGASTSGVF 257 (690)
Q Consensus 183 ~~~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~-----s~s~~~l~~~R~l~G~~~g~~~ 257 (690)
+++...++++++..+..++.++++|.++||+.||++++.+.++.++..++.++ ..+.+.+++.-++.|++.+...
T Consensus 42 ~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~ 121 (524)
T PF05977_consen 42 GSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFN 121 (524)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999998887766554443 2478899999999999999999
Q ss_pred HHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHHhcCchhHHHhcCC
Q psy2962 258 LVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAYWWFIPESARWLISKGR 334 (690)
Q Consensus 258 ~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~~ 334 (690)
|+..+++.|.+|+++...++++.++..++..++||.+++.+. |-.+.|++.++..++.++....++..++ +.+
T Consensus 122 PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~----~~~ 197 (524)
T PF05977_consen 122 PAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLRWKPPPP----PSS 197 (524)
T ss_pred HHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc----ccc
Confidence 999999999999999999999999999999999999999873 4556777766655444433333322110 000
Q ss_pred HHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2962 335 NEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLS 414 (690)
Q Consensus 335 ~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 414 (690)
.+ .+.-.+.-+..++-+.++|.++..++..++..+........++
T Consensus 198 ------------------~~-----------------~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlP 242 (524)
T PF05977_consen 198 ------------------LP-----------------RERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLP 242 (524)
T ss_pred ------------------cc-----------------hhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhh
Confidence 00 0000011122344455667666554444433333222222233
Q ss_pred hc-cCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q psy2962 415 WN-TANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFF 490 (690)
Q Consensus 415 ~~-~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~ 490 (690)
+. .+.++.+ .++.....+++.++|.++.+++.+|+++++.+..+.++.+++++.+++.++ .+...+..++.+++
T Consensus 243 l~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~--~~~~~~~l~l~G~~ 320 (524)
T PF05977_consen 243 LFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPS--FWLALIALFLAGAA 320 (524)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchH--HHHHHHHHHHHHHH
Confidence 33 3344433 344556667888889999999989999888888888888887777766543 55566666777788
Q ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 491 ITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 491 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
.........+...+..|++.||+++++..++...+..+|.++.|.
T Consensus 321 ~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~ 365 (524)
T PF05977_consen 321 WIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGF 365 (524)
T ss_pred HHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888999999999999999999999999888999998886
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-19 Score=197.95 Aligned_cols=345 Identities=11% Similarity=-0.024 Sum_probs=216.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccc-cCCcHHHHHHHHHHHHHHhhhhccccHHH-HHHHHHHHHhhhhhhHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDR-FGRKPTFMISILIMDVFGTLAAFAPDFWT-FTACRLIVGASTSGVFLVAYV 262 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr-~Grr~~ll~~~~l~~i~~~~~~~s~s~~~-l~~~R~l~G~~~g~~~~~~~~ 262 (690)
....+++.+.+.+...+..+++|+++|| +|||++++++.++++++.+.++++++... +.++|+++|+|.|...+...+
T Consensus 49 ~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~ 128 (489)
T PRK10207 49 QEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPAS 128 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHH
Confidence 4567888889998888888999999999 99999999999999999999999876544 558999999999999999999
Q ss_pred HHhhhcCCC--cchhhhhHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHHhcCchhHH--HhcCCH
Q psy2962 263 LALEMVGPS--KRIIAGTVIHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAYWWFIPESARWL--ISKGRN 335 (690)
Q Consensus 263 ~i~e~~~~~--~R~~~~~~~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l--~~~~~~ 335 (690)
++.|.+|++ +|+++.+++.++.++|.+++|.++.++. |||+.|++.++..++.++.+++.++..+-. ..+++.
T Consensus 129 li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (489)
T PRK10207 129 LLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKP 208 (489)
T ss_pred HHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccc
Confidence 999999887 4578899999999999999999988873 799999987554333333333333211100 000111
Q ss_pred HHHHHHHH----------HHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHH--HHHHH
Q psy2962 336 EEAKLIIQ----------AVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVI--IFFLW 403 (690)
Q Consensus 336 ~ea~~~l~----------~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~--~~~~~ 403 (690)
.+....+. ...............-.... ......-...+.+. .+++|+|.+....+. ..+.|
T Consensus 209 ~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~~~-----~~~~r~r~~~~~~l~~~~~~f~ 282 (489)
T PRK10207 209 MSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLS-IVVTIIFFREAFKL-----DKTGRNKMFVAFVLMLEAVVFY 282 (489)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHHHHH
Confidence 11111100 00000000000000000000 00000000000010 145555544332222 22233
Q ss_pred HHHHHHHHHHhhccC-CC-----C--chHHHHHHHHHHHHHHHHHHHHHHHhhcCChhH-------HHHHHHHHHHHHHH
Q psy2962 404 FVCSLTYYGLSWNTA-NL-----G--GNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNF-------LCPCLILSGLCLIV 468 (690)
Q Consensus 404 ~~~~~~~~~~~~~~~-~l-----~--~~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~-------l~~~~~~~~i~~l~ 468 (690)
.......+.+..+.+ .. | ..+.....+..+..++...+.+++.||+++|+. +.+++++.+++++.
T Consensus 283 ~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~ 362 (489)
T PRK10207 283 ILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLT 362 (489)
T ss_pred HHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 333333222222221 11 1 122333334445555677778899999998863 66677777766643
Q ss_pred HH-----hcC---CChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 469 SA-----LLP---LDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 469 ~~-----~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+. ... ..+.|+.+...++.+++.....++...++.+..|++.++.++|+.+....+|+.++..+...
T Consensus 363 ~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~ 437 (489)
T PRK10207 363 AAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATF 437 (489)
T ss_pred HHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 111 12345566666778899999999999999999999999999999999999999999888765
|
|
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.1e-21 Score=192.32 Aligned_cols=307 Identities=13% Similarity=0.054 Sum_probs=223.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
+.++|++.+.+.+.+++.+++.|.+.||+|+|..+++|++++.+++++++|..+|++++++|.++|+|.+...++..+++
T Consensus 105 ~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglaml 184 (464)
T KOG3764|consen 105 NTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAML 184 (464)
T ss_pred ccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCc-chhhhhHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHHhcCchhHHHhcCCHHHHHH
Q psy2962 265 LEMVGPSK-RIIAGTVIHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKL 340 (690)
Q Consensus 265 ~e~~~~~~-R~~~~~~~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~~~~ea~~ 340 (690)
++.+|.+. |++++|+.-.+.++|.+++|++|+.+. |.+..|++.+++.++-..+.+++-|..+
T Consensus 185 Ad~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~------------- 251 (464)
T KOG3764|consen 185 ADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTE------------- 251 (464)
T ss_pred HHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccc-------------
Confidence 99999766 799999999999999999999999884 7999999999999988777766543211
Q ss_pred HHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHHHHHHh-hccCC
Q psy2962 341 IIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLS-WNTAN 419 (690)
Q Consensus 341 ~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~ 419 (690)
.+.+...+..++++++++|..+........+....++.-=.++ +..+.
T Consensus 252 -------------------------------~~~~~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~ 300 (464)
T KOG3764|consen 252 -------------------------------MDPDSTEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLET 300 (464)
T ss_pred -------------------------------cCccccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHh
Confidence 0000123344678889988766544443333322222211111 12222
Q ss_pred C---CchHHHHHHHHHHHHHHHHHHHHHHHhhcC--ChhHHHHHHHHHHHHHHHHHhcCCChh-HHHHHHHHHHHHHHHH
Q psy2962 420 L---GGNIYLNFIISGMVEIPAYLSSMLTLDRYG--RKNFLCPCLILSGLCLIVSALLPLDLN-TVSIVLAMMGKFFITG 493 (690)
Q Consensus 420 l---~~~~~~~~~~~~l~~i~~~~~~~~l~dr~g--rr~~l~~~~~~~~i~~l~~~~~~~~~~-~~~~~~~~l~~~~~~~ 493 (690)
+ +...++.+...++...++..+.+.+.||++ |......+++..++++....+...... |+......+++.....
T Consensus 301 m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~L~vp~~~l~~~i~~~da 380 (464)
T KOG3764|consen 301 MFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQLWVPNFGLGFGIGLADA 380 (464)
T ss_pred ccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHHHhhhhHHHHHHHHHHHH
Confidence 2 234556666677888899999999999999 544445566666655555555543222 1112222222223333
Q ss_pred HHHHHHHHhhcccchH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 494 AYGAVYIFSAEQFPTV---IRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 494 ~~~~~~~~~~e~~p~~---~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
.......+..+.-..+ .-|...++......+|.+++|.++|.
T Consensus 381 sl~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~ 425 (464)
T KOG3764|consen 381 SLIPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGS 425 (464)
T ss_pred HHhhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccch
Confidence 3333344444443333 56788899999999999999999886
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.8e-19 Score=193.69 Aligned_cols=346 Identities=11% Similarity=-0.042 Sum_probs=218.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccc-cCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDR-FGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVL 263 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr-~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~ 263 (690)
..+.+++.+.+.++..++++++|+++|| +|||++++++.++.+++.++.+++++++.+.++|++.|+|.|...+...++
T Consensus 47 ~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~ 126 (475)
T TIGR00924 47 QEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSM 126 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHH
Confidence 5789999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCc---chhhhhHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHHhc----CchhHHHhcC
Q psy2962 264 ALEMVGPSK---RIIAGTVIHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAYWWFIP----ESARWLISKG 333 (690)
Q Consensus 264 i~e~~~~~~---R~~~~~~~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~~~~lp----esp~~l~~~~ 333 (690)
++|++++++ |+.+.+++..+.++|.++++.++..+. +||+.|++.++..++.++.+++.+ +.|+. ..+.
T Consensus 127 ~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~ 205 (475)
T TIGR00924 127 VGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSV-PDPL 205 (475)
T ss_pred HHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCC-CCCc
Confidence 999998764 888999999999999999999998873 799999988765554444333332 22210 0000
Q ss_pred CHHHHHHHHHH------------HHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCc--HHHHHHHHH
Q psy2962 334 RNEEAKLIIQA------------VAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHP--NLFKKSVII 399 (690)
Q Consensus 334 ~~~ea~~~l~~------------~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~l~~ 399 (690)
+.++.+..... ...........+.......-.......... .++ ...+.-|++ .+....+..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~l~l~~~~ 281 (475)
T TIGR00924 206 SGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLA--FKP--RLDAVARNKMYAYIVLFLEA 281 (475)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH--Hhc--cCCHHHHhHHHHHHHHHHHH
Confidence 01110000000 000000000000000000000000000000 000 011111111 222223333
Q ss_pred HHHHHHHHHHHHHHhhcc-CCCC-------chHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----hhHH--HHHHHHHHH
Q psy2962 400 FFLWFVCSLTYYGLSWNT-ANLG-------GNIYLNFIISGMVEIPAYLSSMLTLDRYGR-----KNFL--CPCLILSGL 464 (690)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~-~~l~-------~~~~~~~~~~~l~~i~~~~~~~~l~dr~gr-----r~~l--~~~~~~~~i 464 (690)
.+.|.........++.+. +..+ ........+.++.-++...+..++..+++| +... .+++++.++
T Consensus 282 ~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~ 361 (475)
T TIGR00924 282 VVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGA 361 (475)
T ss_pred HHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Confidence 344544444333333221 1111 123444555555555555444443333333 2333 667777777
Q ss_pred HHHHHHhc-------CCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 465 CLIVSALL-------PLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 465 ~~l~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+++.+.+. ...+.++.+...++.+++.....+....++.+..|++.||+.+|+......+|..+++.+...
T Consensus 362 ~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~ 439 (475)
T TIGR00924 362 SFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATF 439 (475)
T ss_pred HHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77666542 123456667777788899999999999999999999999999999999999999999888765
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-19 Score=197.44 Aligned_cols=344 Identities=12% Similarity=-0.013 Sum_probs=217.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhcc------ccHHHHHHHHHHHHhhhhhhHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFA------PDFWTFTACRLIVGASTSGVFL 258 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s------~s~~~l~~~R~l~G~~~g~~~~ 258 (690)
..+.+++.++. ....+++++.|+++||+|||++++++.++++++.++++++ ++++.+.+.|++.|+|.+...+
T Consensus 61 ~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~ 139 (591)
T PTZ00207 61 QRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDL 139 (591)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHH
Confidence 45677777663 3445677889999999999999999999999999999997 6899999999999999999999
Q ss_pred HHHHHHhhhcCCCcchhhhhHHHHHHHHHHHH-HHHHHHHh-hhchHHHHHHHHHHHHHHHHHHH---hcCchhHHHhcC
Q psy2962 259 VAYVLALEMVGPSKRIIAGTVIHMFFSIGFLL-IAGLAYFV-HDWRHLDILVTLPGLIYLAYWWF---IPESARWLISKG 333 (690)
Q Consensus 259 ~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l-~~~l~~~l-~~Wr~~~~i~~i~~ll~~~~~~~---lpesp~~l~~~~ 333 (690)
.+...+.+|+| ++||++.++...+.++|.++ +++...++ .+|+..+++.++..++..++++. .|++|+|...++
T Consensus 140 ~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~ 218 (591)
T PTZ00207 140 GAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEK 218 (591)
T ss_pred HHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhccccc
Confidence 99999999996 78999999999999999986 44444444 47998888888887776544333 366677765555
Q ss_pred CHHHHHHHHHHHHHHcC-----------------------------------C-c----------c------h-----hh
Q psy2962 334 RNEEAKLIIQAVAEENK-----------------------------------V-I----------L------E-----GF 356 (690)
Q Consensus 334 ~~~ea~~~l~~~~~~n~-----------------------------------~-~----------~------~-----~~ 356 (690)
+.+++++.+++..+..- . . . + -.
T Consensus 219 ~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~ 298 (591)
T PTZ00207 219 HLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLT 298 (591)
T ss_pred CCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 44444443222111100 0 0 0 0 00
Q ss_pred hhh---------c-ccCCCc---hHHHHhh-------h-hcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2962 357 VLD---------G-LLAPSP---EEEEKLK-------A-QNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSW 415 (690)
Q Consensus 357 ~~~---------~-~~~~~~---~~~~~~~-------~-~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 415 (690)
..+ . ..+..+ +....+. + ...+...++++.+++..+|...+..++.+.......+-...
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~~~N~~q 378 (591)
T PTZ00207 299 TFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSIFCCVGAHFVIIFNARF 378 (591)
T ss_pred HhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHHHHHhhCchheeeecHHH
Confidence 000 0 000000 0000000 0 00111126777888888888777776665532222211111
Q ss_pred ccCCC-Cc--hH--HH-HHHHHHHHHHHHHHHHHHHHhhc---------CChhHHHHHHHHHHHHHHHHHhcCCChhHHH
Q psy2962 416 NTANL-GG--NI--YL-NFIISGMVEIPAYLSSMLTLDRY---------GRKNFLCPCLILSGLCLIVSALLPLDLNTVS 480 (690)
Q Consensus 416 ~~~~l-~~--~~--~~-~~~~~~l~~i~~~~~~~~l~dr~---------grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~ 480 (690)
..+.+ +. +. .. ...+.++.+.+|++.+|++.... .|-..+.+..+ +.++.+++++.-.. -..
T Consensus 379 I~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~~p~--~~L 455 (591)
T PTZ00207 379 IYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLTLPK--AAL 455 (591)
T ss_pred HHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHHCCc--cHh
Confidence 11122 11 11 11 45677888889999988876222 22222333333 44444444443221 235
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q psy2962 481 IVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFA-SYTSV 534 (690)
Q Consensus 481 ~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~-p~i~~ 534 (690)
.+..++.+++.+..+++....++|+|. ++-|+-.-+.....-+|+++- -.+.|
T Consensus 456 ~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G 509 (591)
T PTZ00207 456 PLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYG 509 (591)
T ss_pred HHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHH
Confidence 566677789999999999999999999 778888887777777777664 33444
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.2e-19 Score=178.62 Aligned_cols=304 Identities=13% Similarity=0.087 Sum_probs=231.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhh---ccccHHHHHHHHHHHHhhhhhhHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAA---FAPDFWTFTACRLIVGASTSGVFLVAY 261 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~---~s~s~~~l~~~R~l~G~~~g~~~~~~~ 261 (690)
..+.++++..++.|+.+++++.|++.+|+|+|+.+++++.+.++++.+.. -..+|..++++-|+.|.|.+...+++.
T Consensus 47 ~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaN 126 (422)
T COG0738 47 YFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAAN 126 (422)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccc
Confidence 57899999999999999999999999999999999999999999999984 567899999999999999999999999
Q ss_pred HHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh----------------------hchHHHHHHHHHHHHHHHHH
Q psy2962 262 VLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH----------------------DWRHLDILVTLPGLIYLAYW 319 (690)
Q Consensus 262 ~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~----------------------~Wr~~~~i~~i~~ll~~~~~ 319 (690)
.++...-++++..+.+++.+.+.++|.+++|+++..+- .|++++.+.+...+++.+..
T Consensus 127 p~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~ 206 (422)
T COG0738 127 PYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLI 206 (422)
T ss_pred hHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987652 25566666555544444433
Q ss_pred HHh--cCchhHHHhcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHH
Q psy2962 320 WFI--PESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSV 397 (690)
Q Consensus 320 ~~l--pesp~~l~~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l 397 (690)
... |+.+ ....+..+.+.....+++|+|.++...+
T Consensus 207 ~~~k~p~~~-------------------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~gvl 243 (422)
T COG0738 207 LLSKLPDLQ-------------------------------------------VAAPSLGASGSAGLSSLFQNKHLRLGVL 243 (422)
T ss_pred HhccCCcCC-------------------------------------------cccccccccccchHHHHHhChHHHHHHH
Confidence 322 2211 0000111111225788999999988777
Q ss_pred HHHHHHHHH-HHHHHHHhhccCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcC
Q psy2962 398 IIFFLWFVC-SLTYYGLSWNTANLGG---NIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLP 473 (690)
Q Consensus 398 ~~~~~~~~~-~~~~~~~~~~~~~l~~---~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~ 473 (690)
..++.-... ....+.+.+..+..+. +............++|++++.+++.|+...+.+.....+..+.++...+.+
T Consensus 244 ~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~ 323 (422)
T COG0738 244 AIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIG 323 (422)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 776655433 3333444444443442 233344455566789999999999999999998888877777777777765
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy2962 474 LDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLE 536 (690)
Q Consensus 474 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~ 536 (690)
+ .+.+....+.+++.+..+|..++...+..| + .....|....+.-+|+++.|++.|++
T Consensus 324 g---~v~~~~l~~ig~F~simfPTIfslal~~l~-~-~ts~~s~~l~maivGGAiiP~l~G~i 381 (422)
T COG0738 324 G---VVALYALFLIGLFNSIMFPTIFSLALKNLG-E-HTSVGSGLLVMAIVGGAIIPPLQGVI 381 (422)
T ss_pred C---hHHHHHHHHHHHHhHHHHHHHHHHHHhccC-c-cccccceeeeeheecchHHHHHHHHH
Confidence 4 345556667789999999999999999999 3 34555666777789999999999983
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.83 E-value=1e-17 Score=181.29 Aligned_cols=308 Identities=12% Similarity=0.005 Sum_probs=198.4
Q ss_pred ccchhHHH--HHHHHHHHHHHHHH-HhhccccCCcHHHHHHHHHH-HHHHhhhh---cccc-HHHHHHHHHHHHhhhhhh
Q psy2962 185 AWYRGTSD--AFLMMGVLLGSLIF-GDISDRFGRKPTFMISILIM-DVFGTLAA---FAPD-FWTFTACRLIVGASTSGV 256 (690)
Q Consensus 185 ~~~~gli~--s~~~lg~~ig~~~~-G~lsDr~Grr~~ll~~~~l~-~i~~~~~~---~s~s-~~~l~~~R~l~G~~~g~~ 256 (690)
..++|+.. ++..+...+.+++. ++.+||+||||..++...+. .+.....+ ...+ ..+++..-++.++..+..
T Consensus 35 ~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 114 (390)
T TIGR02718 35 LTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQ 114 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 57888873 66677787788888 55899999999875555332 21222222 2322 334455566677778888
Q ss_pred HHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHHHHHHHhcCchhHHHhcC
Q psy2962 257 FLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDILVTLPGLIYLAYWWFIPESARWLISKG 333 (690)
Q Consensus 257 ~~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---~~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~ 333 (690)
.+....+..|..++++++...+....+..+|.++++....++ .+||..|++.++..++..+..++++|.++ .
T Consensus 115 d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~-----~ 189 (390)
T TIGR02718 115 DIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAV-----A 189 (390)
T ss_pred HHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCc-----C
Confidence 888888999999999999999999999999999988776655 37999999999887776655555544321 0
Q ss_pred CHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 334 RNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGL 413 (690)
Q Consensus 334 ~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 413 (690)
+.++ . +....++++++|+|.++......++........+...
T Consensus 190 ~~~~--------------------------------~------~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 231 (390)
T TIGR02718 190 SPEA--------------------------------P------LARRASLFRFFRRPLAWSLLALALLSAMTAVSGFGLS 231 (390)
T ss_pred cccc--------------------------------c------hhhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 0000 0 0011235677888877666555554444333333223
Q ss_pred hhccCCCCchHHHHH---HHHHH-HHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcC----CChhHHHHHHHH
Q psy2962 414 SWNTANLGGNIYLNF---IISGM-VEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLP----LDLNTVSIVLAM 485 (690)
Q Consensus 414 ~~~~~~l~~~~~~~~---~~~~l-~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~----~~~~~~~~~~~~ 485 (690)
..+..+.+.+..... ...+. ..+++.++.+++.||+|+|+.+..+..+.++..+...... ....+.......
T Consensus 232 ~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (390)
T TIGR02718 232 KLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSA 311 (390)
T ss_pred hHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHH
Confidence 333334554433333 33333 4456788999999999999988877665533332222111 111222233334
Q ss_pred HHHHHHHHHHHHHHHHhhcccch-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 486 MGKFFITGAYGAVYIFSAEQFPT-VIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 486 l~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+..+..+..++..+....+..++ +.+++.+++.+....+|.+++|.+.|.
T Consensus 312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~ 362 (390)
T TIGR02718 312 FGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGY 362 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667777777777677665 789999999999999999999999987
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-17 Score=177.17 Aligned_cols=308 Identities=19% Similarity=0.234 Sum_probs=223.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccC-CcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFG-RKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVL 263 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~G-rr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~ 263 (690)
..++|++.++..+...++++++|.++||++ +|+++.+..++.++......+.++++.+++.-++..+......+...++
T Consensus 36 ~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi 115 (400)
T PF03825_consen 36 GTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSI 115 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 689999999999999999999999999987 4777778777777777777888999999999988998888888999999
Q ss_pred HhhhcCCCcchhhhhHHHHHHHHHHHHHHHH-HHHhh------hchHHHHHHHHHHHHHHHHHHHhcCchhHHHhcCCHH
Q psy2962 264 ALEMVGPSKRIIAGTVIHMFFSIGFLLIAGL-AYFVH------DWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNE 336 (690)
Q Consensus 264 i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l-~~~l~------~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~~~~ 336 (690)
..+.... ++.-.+-.-...++|.+++... +..+. +....+++.+...++.....+.+|+.|+ ++
T Consensus 116 ~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~----~~--- 186 (400)
T PF03825_consen 116 ALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTPP----KR--- 186 (400)
T ss_pred HHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCcc----cc---
Confidence 8888763 3333344444555555554322 11111 2234556666555555555666787652 00
Q ss_pred HHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2962 337 EAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWN 416 (690)
Q Consensus 337 ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 416 (690)
+.++..++....+..+++|+|++....+..++........|.....+
T Consensus 187 ---------------------------------~~~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~~y 233 (400)
T PF03825_consen 187 ---------------------------------SAKESVKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFSIY 233 (400)
T ss_pred ---------------------------------ccCCCcccccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000111112234578999998888777777777777666666666
Q ss_pred cCCCCc----hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHH----HHHHH
Q psy2962 417 TANLGG----NIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVL----AMMGK 488 (690)
Q Consensus 417 ~~~l~~----~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~----~~l~~ 488 (690)
.++.++ .......+..+.|++.....+++..|+|.|+++.++.+..++=..++...+++.. ..... .++.+
T Consensus 234 l~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~-~~~~~~~l~q~lhG 312 (400)
T PF03825_consen 234 LQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWP-FIVALQLLGQLLHG 312 (400)
T ss_pred HHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHhhhh
Confidence 666662 2344556677889999999999999999999999999999999888887743322 22222 24577
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy2962 489 FFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTF-ARVGGIFASYTSVL 535 (690)
Q Consensus 489 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~-~~lg~~i~p~i~~~ 535 (690)
...+..+.....++.+..|++.|+++.|+.+.. ..+|.+++.++.|+
T Consensus 313 ~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~ 360 (400)
T PF03825_consen 313 LTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGW 360 (400)
T ss_pred HHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 888888889999999999999999999998776 56999999999997
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-19 Score=205.63 Aligned_cols=263 Identities=13% Similarity=0.088 Sum_probs=182.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccc---------------------------
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAP--------------------------- 237 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~--------------------------- 237 (690)
+.+.|++.+.+.++++++.++.|+++||+|||+.+.++.++++++++++++.+
T Consensus 67 s~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~ 146 (633)
T TIGR00805 67 TSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCM 146 (633)
T ss_pred CCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccccccccccccccc
Confidence 67899999999999999999999999999999999999999999999987753
Q ss_pred ------------------------cHHHHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHH
Q psy2962 238 ------------------------DFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAG 293 (690)
Q Consensus 238 ------------------------s~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~ 293 (690)
.+..++++|+++|+|.+..++...+++.|++|+++|+++.+++..+..+|.+++++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~l 226 (633)
T TIGR00805 147 ENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYL 226 (633)
T ss_pred CCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHH
Confidence 25678899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh-------------------------hchHHHHHHHHHHHHHHHHHHHhcCc-hhHHHhcCCHHHHHHHHHHHHH
Q psy2962 294 LAYFVH-------------------------DWRHLDILVTLPGLIYLAYWWFIPES-ARWLISKGRNEEAKLIIQAVAE 347 (690)
Q Consensus 294 l~~~l~-------------------------~Wr~~~~i~~i~~ll~~~~~~~lpes-p~~l~~~~~~~ea~~~l~~~~~ 347 (690)
+++++. .||..|++.++++++..+.++++|+. |+.- .+.+.++.++. .
T Consensus 227 lgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~-~~~~~~~~~~~-----~ 300 (633)
T TIGR00805 227 LGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEG-KRVNVDVHETE-----K 300 (633)
T ss_pred HHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCcc-cccchhhhhhh-----c
Confidence 887652 26667888888877776666667754 2100 00000000000 0
Q ss_pred HcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHH-HHHHHHHhhccCCCCchHHH
Q psy2962 348 ENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVC-SLTYYGLSWNTANLGGNIYL 426 (690)
Q Consensus 348 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 426 (690)
.+... ... . .......+.....++.++++|.++...+..++..... .+..+.+.+....++.+...
T Consensus 301 ~~~~~-~~~-----------~-~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ 367 (633)
T TIGR00805 301 LEKSE-DKS-----------R-KKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAE 367 (633)
T ss_pred ccccc-ccc-----------c-hhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 00000 000 0 0000000011234667899998888777766665543 34445555666666765544
Q ss_pred HHHHHH---H-HHHHHHHHHHHHHhhcCC--hhHHHHHHHHHHHHH
Q psy2962 427 NFIISG---M-VEIPAYLSSMLTLDRYGR--KNFLCPCLILSGLCL 466 (690)
Q Consensus 427 ~~~~~~---l-~~i~~~~~~~~l~dr~gr--r~~l~~~~~~~~i~~ 466 (690)
...+.+ + ..+++.+++|+++||+++ |+.+..++++..+..
T Consensus 368 ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~ 413 (633)
T TIGR00805 368 ANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSY 413 (633)
T ss_pred HHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHH
Confidence 443333 2 346788999999999984 455555555554443
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-17 Score=181.28 Aligned_cols=308 Identities=11% Similarity=0.071 Sum_probs=204.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccc----cCC-cHHHHHHHHHHHHHHhhhhcccc------HHHHHHHHHHHHhhh
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDR----FGR-KPTFMISILIMDVFGTLAAFAPD------FWTFTACRLIVGAST 253 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr----~Gr-r~~ll~~~~l~~i~~~~~~~s~s------~~~l~~~R~l~G~~~ 253 (690)
...+|++.++..+..++..|+.|+++|| +|| |+.++.+.+..+++.++....++ +..+++..++.+.+.
T Consensus 44 ~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~ 123 (444)
T PRK09669 44 AAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVY 123 (444)
T ss_pred HHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999 787 56666777777777665554443 455666677777777
Q ss_pred hhhHHHHHHHHhhhc-CCCcchhhhhHHHHHHHHHHHHHHHHHHH----h------hhchHHHHHHHHHHHHHHHHHH-H
Q psy2962 254 SGVFLVAYVLALEMV-GPSKRIIAGTVIHMFFSIGFLLIAGLAYF----V------HDWRHLDILVTLPGLIYLAYWW-F 321 (690)
Q Consensus 254 g~~~~~~~~~i~e~~-~~~~R~~~~~~~~~~~~lG~~l~~~l~~~----l------~~Wr~~~~i~~i~~ll~~~~~~-~ 321 (690)
........++..|+. ++++|++..++...+..+|..+++.+... + .+|+..+.+.++++++..+..+ .
T Consensus 124 t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~ 203 (444)
T PRK09669 124 TAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFM 203 (444)
T ss_pred HhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCC
Confidence 777777788999998 56889988888877777777766543322 2 2577777777777665544333 2
Q ss_pred hcCchhHHHhcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHH
Q psy2962 322 IPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFF 401 (690)
Q Consensus 322 lpesp~~l~~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 401 (690)
.+|.++ . + +.++......++.++|+|.++...+..++
T Consensus 204 ~~e~~~-------~----------------------------------~--~~~~~~~~~~~~~~~~n~~~~~l~~~~~~ 240 (444)
T PRK09669 204 TKERYT-------P----------------------------------E--VDNSSSVWKDLKLLLGNSQWRIMFIFNVV 240 (444)
T ss_pred eEEecC-------C----------------------------------C--CcCCCCHHHHHHHHhCCchHHHHHHHHHH
Confidence 343210 0 0 00001112345677899988776655554
Q ss_pred HHHHHHHHHHHHhhccCCC-Cc-hH-HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhH
Q psy2962 402 LWFVCSLTYYGLSWNTANL-GG-NI-YLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNT 478 (690)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l-~~-~~-~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~ 478 (690)
.+...........++.+.. +. +. ........+..+++.++.+++.||+|+|+.+..+.++.++..+.+.+.+.+..+
T Consensus 241 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (444)
T PRK09669 241 LLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVW 320 (444)
T ss_pred HHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHH
Confidence 4443322222222222222 21 11 122233345567788888999999999999888776665544444444444455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccch-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 479 VSIVLAMMGKFFITGAYGAVYIFSAEQFPT-------VIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 479 ~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
..++..++.+++.+...+..+++.+|..+. +..|...|+.+.+..+|..++|.+.+.
T Consensus 321 ~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ 384 (444)
T PRK09669 321 LIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGW 384 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666677888888889999999998752 234667888899999999999999886
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.4e-17 Score=174.39 Aligned_cols=353 Identities=15% Similarity=0.181 Sum_probs=233.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcc----ccCCcHHHHHH-HHHHHHHHhhhhccccHH-----------------HH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISD----RFGRKPTFMIS-ILIMDVFGTLAAFAPDFW-----------------TF 242 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsD----r~Grr~~ll~~-~~l~~i~~~~~~~s~s~~-----------------~l 242 (690)
....+++..+..+..++.+++.|+++| |+|||+.++++ .+...++.++.++++++. .+
T Consensus 38 ~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~ 117 (477)
T TIGR01301 38 HAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVF 117 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHH
Confidence 578899999999999999999999999 59999988775 666666667777776643 22
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhhcCCCcc--hhhhhHHHHHHHHHHHHHHHHHHHhh------------------hch
Q psy2962 243 TACRLIVGASTSGVFLVAYVLALEMVGPSKR--IIAGTVIHMFFSIGFLLIAGLAYFVH------------------DWR 302 (690)
Q Consensus 243 ~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R--~~~~~~~~~~~~lG~~l~~~l~~~l~------------------~Wr 302 (690)
+++-.+..++.....+...+++.|.+|+++| +.+.++.+.+.++|.++++.++++.. +.|
T Consensus 118 ~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (477)
T TIGR01301 118 VVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLK 197 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHH
Confidence 3333344557888888899999999998865 57899999999999999999887641 457
Q ss_pred HHHHHHHHHHHHHH-HHHHHhcCchhHHHhcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCc
Q psy2962 303 HLDILVTLPGLIYL-AYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKP 381 (690)
Q Consensus 303 ~~~~i~~i~~ll~~-~~~~~lpesp~~l~~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (690)
..|++.++..++.. +..+..+|.|.. ..++.++ + + .++ .++.....
T Consensus 198 ~~F~i~a~~l~i~~l~t~~~v~E~~~~--~~~~~~~--~---~-------------~~~-------------~~~~~~~~ 244 (477)
T TIGR01301 198 SCFLIDIILLAILTYIALSAVKENPLI--GSDDFIN--S---E-------------AAP-------------PSKHGEEA 244 (477)
T ss_pred HHHHHHHHHHHHHHHHHeeeeeccCCC--ccccchh--h---h-------------ccc-------------ccccchhh
Confidence 78888777666654 445557886521 0000000 0 0 000 00000001
Q ss_pred cchhhcc-----CcHHHHHHHHHHHHHHHHH-HHHHHHhh-----ccCCCC-chH--------HHHHHHHHHHHHHHHHH
Q psy2962 382 SIFELFR-----HPNLFKKSVIIFFLWFVCS-LTYYGLSW-----NTANLG-GNI--------YLNFIISGMVEIPAYLS 441 (690)
Q Consensus 382 ~~~~l~~-----~~~~~~~~l~~~~~~~~~~-~~~~~~~~-----~~~~l~-~~~--------~~~~~~~~l~~i~~~~~ 441 (690)
.++++++ .+.+++..++.++.|+... +.+|...+ +...-. ... .+...+.++...+.+++
T Consensus 245 ~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~ 324 (477)
T TIGR01301 245 FFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIG 324 (477)
T ss_pred hHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222222 2456777778888887432 22222222 111111 111 12334455555667777
Q ss_pred HHHHHhhcCC-hhHHHHHHHHHHHHHHHHHhcCC---C--h--------------hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 442 SMLTLDRYGR-KNFLCPCLILSGLCLIVSALLPL---D--L--------------NTVSIVLAMMGKFFITGAYGAVYIF 501 (690)
Q Consensus 442 ~~~l~dr~gr-r~~l~~~~~~~~i~~l~~~~~~~---~--~--------------~~~~~~~~~l~~~~~~~~~~~~~~~ 501 (690)
..++.+|+|+ |....++.++.+++++...++.. + . .+..++...+.++.....+.+.+++
T Consensus 325 l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~siPfal 404 (477)
T TIGR01301 325 MEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITYSIPFAL 404 (477)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHHHHhHHH
Confidence 8888999985 67768888888877777765432 0 0 2556666777789999999999999
Q ss_pred hhcccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCccccccccccccchhhccccCCCcchhhccccchh
Q psy2962 502 SAEQFPTV--IRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVI 579 (690)
Q Consensus 502 ~~e~~p~~--~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (690)
+++..|++ ..|..+|+.|++..+.+++.....|... .
T Consensus 405 ~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~------~----------------------------------- 443 (477)
T TIGR01301 405 ASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWD------Q----------------------------------- 443 (477)
T ss_pred HHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHH------H-----------------------------------
Confidence 99999954 4499999999999999998887665411 0
Q ss_pred hhhhhhhhhhcccchhhHHHHHHHHHHHHHHhh-hccCCCC
Q psy2962 580 LIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSL-ILPETHH 619 (690)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~lpet~~ 619 (690)
.........+.+.++.+++++++++ .+|+++.
T Consensus 444 --------~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 444 --------LFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred --------HcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 0022345567777888888888886 7787653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.6e-17 Score=178.35 Aligned_cols=313 Identities=12% Similarity=0.061 Sum_probs=202.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcc----ccCC-cHHHHHHHHHHHHHHhhhhcccc------HHHHHHHHHHHHhhh
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISD----RFGR-KPTFMISILIMDVFGTLAAFAPD------FWTFTACRLIVGAST 253 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsD----r~Gr-r~~ll~~~~l~~i~~~~~~~s~s------~~~l~~~R~l~G~~~ 253 (690)
...+|++..+..+--++..|+.|.++| |+|| |+.++++.+..+++.++....++ +..+++.-++.+++.
T Consensus 41 ~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~ 120 (473)
T PRK10429 41 VGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTY 120 (473)
T ss_pred HHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999 6698 66777788887777665544331 345556667778888
Q ss_pred hhhHHHHHHHHhhhc-CCCcchhhhhHHHHHHHHHHHHHHHHHHH----h------hhchHHHHHHHHHHHHHHHH-HHH
Q psy2962 254 SGVFLVAYVLALEMV-GPSKRIIAGTVIHMFFSIGFLLIAGLAYF----V------HDWRHLDILVTLPGLIYLAY-WWF 321 (690)
Q Consensus 254 g~~~~~~~~~i~e~~-~~~~R~~~~~~~~~~~~lG~~l~~~l~~~----l------~~Wr~~~~i~~i~~ll~~~~-~~~ 321 (690)
....+...+++.|.. ++++|.+..++-..+.++|.++.+.+... + .+|+....+.++..++..+. ++.
T Consensus 121 t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~ 200 (473)
T PRK10429 121 TIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRN 200 (473)
T ss_pred HHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 888888889999999 58999999988777777775555444332 1 13666666666655544333 333
Q ss_pred hcCchhHHHhcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHH
Q psy2962 322 IPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFF 401 (690)
Q Consensus 322 lpesp~~l~~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 401 (690)
.+|.+.. ++ . +..+.++...+..++.+++||.++..++..++
T Consensus 201 ~~e~~~~-------~~--------------~-----------------~~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~ 242 (473)
T PRK10429 201 VHEVYSS-------DN--------------Q-----------------VSAEGSHLTLKDIVALIYKNDQLSCLLGMALA 242 (473)
T ss_pred ceecCCc-------cc--------------c-----------------ccccccCCCHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4553210 00 0 00000001112234456788877766666555
Q ss_pred HHHHHHHHHHHHhhccCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHh---cCCC
Q psy2962 402 LWFVCSLTYYGLSWNTANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSAL---LPLD 475 (690)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~---~~~~ 475 (690)
.+...........++.....++ ......+.++..+++.++.+++.||+|+|+.+..+..+..++.+.+.. .+..
T Consensus 243 ~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (473)
T PRK10429 243 YNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPH 322 (473)
T ss_pred HHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCch
Confidence 5544333322223333322222 223334445777888899999999999999988877766655544432 2333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 476 LNTVSIVLAMMGKFFITGAYGAVYIFSAEQFP-------TVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 476 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p-------~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
..+..++..++.+++.+......+++.+|..+ .+..|..+|..+.+..+|..+++.+.|+
T Consensus 323 ~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~ 389 (473)
T PRK10429 323 NALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGV 389 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566677888888888899999965 2234567889999999999999998886
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-16 Score=175.77 Aligned_cols=342 Identities=12% Similarity=-0.005 Sum_probs=199.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccc-cCCcHHHHHHHHHHHHHHhhhhccc-cHHHHHHHHHHHHhhhhhhHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDR-FGRKPTFMISILIMDVFGTLAAFAP-DFWTFTACRLIVGASTSGVFLVAYV 262 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr-~Grr~~ll~~~~l~~i~~~~~~~s~-s~~~l~~~R~l~G~~~g~~~~~~~~ 262 (690)
..+.+++.+.+........+++|+++|| +|||++++++.++.+++.+++++++ +.+.+.++|+++|++.|...+...+
T Consensus 56 ~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~ 135 (500)
T PRK09584 56 EADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSS 135 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHH
Confidence 3456677777666666666789999999 5999999999999999999998874 5667778899999999999899999
Q ss_pred HHhhhcCCCc--chhhhhHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHH----HhcCchhHHHhcC
Q psy2962 263 LALEMVGPSK--RIIAGTVIHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAYWW----FIPESARWLISKG 333 (690)
Q Consensus 263 ~i~e~~~~~~--R~~~~~~~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~~~----~lpesp~~l~~~~ 333 (690)
++.|++|+++ |+.+.++++.+.++|.+++|.+++++. |||+.|++.++..++.++.++ .++|.++- ..+.
T Consensus 136 l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~-~~~~ 214 (500)
T PRK09584 136 LLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSK-PDFE 214 (500)
T ss_pred HHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCC-CCcc
Confidence 9999998654 456788899999999999999998883 799999988765444332222 22332100 0000
Q ss_pred CHHHHHHHH-----------HHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHH--HHHH
Q psy2962 334 RNEEAKLII-----------QAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKS--VIIF 400 (690)
Q Consensus 334 ~~~ea~~~l-----------~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--l~~~ 400 (690)
+.+.....+ ......+. +........... ........... ...+.-|.+.+.... +...
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i 286 (500)
T PRK09584 215 PINYRKLLLTIVGVVALIAIATWLLHNQ-EIARMALGVVAL---GIVVIFGKEAF----AMKGAARRKMIVAFILMLEAI 286 (500)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHH---HHHHHHHHHHh----hcCHHHHHHHHHHHHHHHHHH
Confidence 011111000 00000000 000000000000 00000000000 000111111111111 1111
Q ss_pred HHHHHHHHHHHHHhh----ccC-C-CC--chHHHHHHHHHHHHHHHHHHHHHHHhh----cCChhHHHHHHHHHHHHHHH
Q psy2962 401 FLWFVCSLTYYGLSW----NTA-N-LG--GNIYLNFIISGMVEIPAYLSSMLTLDR----YGRKNFLCPCLILSGLCLIV 468 (690)
Q Consensus 401 ~~~~~~~~~~~~~~~----~~~-~-l~--~~~~~~~~~~~l~~i~~~~~~~~l~dr----~grr~~l~~~~~~~~i~~l~ 468 (690)
+.|.........+.. ..+ . .+ ........+.++..++...+..++-+| ++.+..+.+++++.+++++.
T Consensus 287 ~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~ 366 (500)
T PRK09584 287 IFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLV 366 (500)
T ss_pred HHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHH
Confidence 111111111111111 011 1 12 223344445555555555555444444 44556778888888888877
Q ss_pred HHhcCC-------ChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 469 SALLPL-------DLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 469 ~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+..... -+.++.+...++.+++.....++...++.+..|++.||.++|+......+|+.++..+...
T Consensus 367 l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~ 440 (500)
T PRK09584 367 LPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANL 440 (500)
T ss_pred HHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665422 1134566667777899999999999999999999999999998887777887777766653
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-15 Score=164.84 Aligned_cols=352 Identities=17% Similarity=0.117 Sum_probs=242.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHH-HHHHHHHHHHHHhhhhcc-c-cHHHHHHHHHHHHhhhhhhHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPT-FMISILIMDVFGTLAAFA-P-DFWTFTACRLIVGASTSGVFLVAY 261 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~-ll~~~~l~~i~~~~~~~s-~-s~~~l~~~R~l~G~~~g~~~~~~~ 261 (690)
+...++..++..+-.++..|+.|.++|+-|+||. +.+..++..+++++..+. + +++...+.-++.-++.+...+...
T Consensus 69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyn 148 (477)
T PF11700_consen 69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYN 148 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999999999999999987664 445555566666666663 3 354555556666678888888899
Q ss_pred HHHhhhcCCCcc--------------------------hhhhhHHHHHHHHHHHHHHHHHHHhh----h-------chHH
Q psy2962 262 VLALEMVGPSKR--------------------------IIAGTVIHMFFSIGFLLIAGLAYFVH----D-------WRHL 304 (690)
Q Consensus 262 ~~i~e~~~~~~R--------------------------~~~~~~~~~~~~lG~~l~~~l~~~l~----~-------Wr~~ 304 (690)
+++.|..+++++ ++.++.-.....+|.++.-.+...+. + -|..
T Consensus 149 a~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~ 228 (477)
T PF11700_consen 149 AYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVA 228 (477)
T ss_pred HHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHH
Confidence 999999999998 89999888888888887666655541 1 3777
Q ss_pred HHHHHHHHHHHH-HHHHHhcCchhHHHhcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccc
Q psy2962 305 DILVTLPGLIYL-AYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSI 383 (690)
Q Consensus 305 ~~i~~i~~ll~~-~~~~~lpesp~~l~~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (690)
+.+.++.-+++. ..++++||.|+--..+....-.+.-. ++-..++
T Consensus 229 ~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~----------------------------------~~l~~t~ 274 (477)
T PF11700_consen 229 FLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGF----------------------------------KRLWRTF 274 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHH----------------------------------HHHHHHH
Confidence 777777755554 45556777653100000000000000 1112234
Q ss_pred hhhccCcHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCCh--hHHHH
Q psy2962 384 FELFRHPNLFKKSVIIFFLWF-VCSLTYYGLSWNTANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRK--NFLCP 457 (690)
Q Consensus 384 ~~l~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr--~~l~~ 457 (690)
+++.|.|.+.+.++..++..- .+.+......+..+.++.+ .....++..+..++|.++.+++.||+|.| +++..
T Consensus 275 k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~ 354 (477)
T PF11700_consen 275 KEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLI 354 (477)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 555566666665555444332 3344444444555556533 44555667788899999999999999988 77766
Q ss_pred HHHHHHHHHHHHHh------cCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 458 CLILSGLCLIVSAL------LPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASY 531 (690)
Q Consensus 458 ~~~~~~i~~l~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~ 531 (690)
+.++..+..+...+ ......+...++.++.+++.+..++..-++.+|+.|++..+..+|+..+.++..++++|+
T Consensus 355 ~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPl 434 (477)
T PF11700_consen 355 SLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPL 434 (477)
T ss_pred HHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 66655443333322 112345667778888899999999999999999999999999999999999999999999
Q ss_pred HHHHccccccccCccccccccccccchhhccccCCCcchhhccccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHh
Q psy2962 532 TSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILS 611 (690)
Q Consensus 532 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 611 (690)
+.+.+. + ...+....+....++.+++.++.
T Consensus 435 l~g~i~------~--------------------------------------------~tg~~r~g~~~l~~lf~~gl~ll 464 (477)
T PF11700_consen 435 LFGLIT------D--------------------------------------------ATGSQRYGFLFLLVLFLIGLILL 464 (477)
T ss_pred HHHHHH------H--------------------------------------------HhCCchhHHHHHHHHHHHHHHHH
Confidence 998721 1 13445677888888888888888
Q ss_pred hhccCCCCC
Q psy2962 612 LILPETHHK 620 (690)
Q Consensus 612 ~~lpet~~~ 620 (690)
++++..|++
T Consensus 465 ~~v~~~~g~ 473 (477)
T PF11700_consen 465 FFVDVEKGR 473 (477)
T ss_pred hhccchhhh
Confidence 888877665
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.6e-16 Score=155.07 Aligned_cols=318 Identities=15% Similarity=0.129 Sum_probs=245.6
Q ss_pred ceeehhhhhhhhccCCCCCcchhccchhhcccccCCCccccccccceeeeCCccchhHHHHHHHHHHHHHHHHHHhhccc
Q psy2962 133 TTVSEVLMVFHRRLGDKVPSLYIDLNQTIQYSRSTQEPVLTNFVMWSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDR 212 (690)
Q Consensus 133 tiv~e~~p~~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvC~~~~~~gli~s~~~lg~~ig~~~~G~lsDr 212 (690)
|-+..+++++++++|.+ ....|++.++..+...+.+++..+++.|
T Consensus 29 tsvgPLL~~Ir~~~gls-----------------------------------~s~aGlLTtLPll~fg~~ap~a~~Lar~ 73 (395)
T COG2807 29 TSVGPLLDEIRQDLGLS-----------------------------------FSVAGLLTTLPLLAFGLFAPAAPRLARR 73 (395)
T ss_pred hhhhhhHHHHHHHhccc-----------------------------------HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 55666888888888877 5789999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHH
Q psy2962 213 FGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIA 292 (690)
Q Consensus 213 ~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~ 292 (690)
+|.++.+..++++..++.++-... +.+.++.+-.+.|.|.+...+..+.++.+.+| |+-+..++++.+...+|..+++
T Consensus 74 ~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa 151 (395)
T COG2807 74 FGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAA 151 (395)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHh
Confidence 999999999999999999999887 88889999999999999999999999999996 5679999999999999888877
Q ss_pred HHHHHh----hhchHHHHHHHHHHHHHHHHHHHhcCchhHHHhcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchH
Q psy2962 293 GLAYFV----HDWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEE 368 (690)
Q Consensus 293 ~l~~~l----~~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~ 368 (690)
.++-.+ .+||....+.++++++.++.|+.-. .| .+
T Consensus 152 ~lavpla~~~~gW~~aL~~WAl~allAl~~WlPq~--~r-----~~---------------------------------- 190 (395)
T COG2807 152 ALAVPLAQHSGGWRGALGFWALLALLALLIWLPQA--LR-----EQ---------------------------------- 190 (395)
T ss_pred hhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhhhc--cc-----cc----------------------------------
Confidence 776655 3699999999999988887765321 11 00
Q ss_pred HHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCc---hHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 369 EEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNTANLGG---NIYLNFIISGMVEIPAYLSSMLT 445 (690)
Q Consensus 369 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~l~~i~~~~~~~~l 445 (690)
....+.+..+-..++|+|.-|...+.+.+..+........++-...+.|. ..+....+..+++++..+....+
T Consensus 191 ----~~~~~~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~l 266 (395)
T COG2807 191 ----AASIATKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLL 266 (395)
T ss_pred ----ccccccccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 00112222334568899988887777666655444443333322333333 34555667788889999999999
Q ss_pred Hhhc-CChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccch-HHHHHHHHHHHHHHH
Q psy2962 446 LDRY-GRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPT-VIRNIGIGAGSTFAR 523 (690)
Q Consensus 446 ~dr~-grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~g~~~~~~~ 523 (690)
.+|. .+|+..+....++.++.+.+.+.|....++. +++.+++.++.++...+++.....+ +..+.-.|+.+.+++
T Consensus 267 a~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw---~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GY 343 (395)
T COG2807 267 ARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW---ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGY 343 (395)
T ss_pred HHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH---HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhH
Confidence 9865 4677777777777788887777776544333 4667788889999888877777654 445666788899999
Q ss_pred HHHHHHHHHHHH
Q psy2962 524 VGGIFASYTSVL 535 (690)
Q Consensus 524 lg~~i~p~i~~~ 535 (690)
+-+.++|++.|.
T Consensus 344 llAa~GP~l~G~ 355 (395)
T COG2807 344 LLAAFGPWLFGF 355 (395)
T ss_pred HHHhhhhhhHhH
Confidence 999999999997
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.1e-17 Score=179.20 Aligned_cols=325 Identities=11% Similarity=0.029 Sum_probs=213.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccC-----CcHHHHHHHHHH-HHHHhhhhccccHHHHH-HHHHHHHhhhhhhH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFG-----RKPTFMISILIM-DVFGTLAAFAPDFWTFT-ACRLIVGASTSGVF 257 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~G-----rr~~ll~~~~l~-~i~~~~~~~s~s~~~l~-~~R~l~G~~~g~~~ 257 (690)
..+++...++..+...+-.+ +|+++||++ ||+.++++.++. .++....+..++...+. +.+++.+++.+...
T Consensus 60 ~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~d 138 (468)
T TIGR00788 60 GARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYD 138 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence 57788889999999999765 999999998 788888887776 34444445555644444 58999999999999
Q ss_pred HHHHHHHhhhcCCCcchhhhhHHHHH---HHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHHhcCchhHHHh
Q psy2962 258 LVAYVLALEMVGPSKRIIAGTVIHMF---FSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAYWWFIPESARWLIS 331 (690)
Q Consensus 258 ~~~~~~i~e~~~~~~R~~~~~~~~~~---~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~ 331 (690)
+++..++.|..+ +++....+..... ..+|.++++.+++.+. +||..|++.++..++..+..++++|.+.....
T Consensus 139 v~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~ 217 (468)
T TIGR00788 139 VLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRP 217 (468)
T ss_pred HhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 999999999998 5555544444333 3479999888888763 69999999888877776666778885310000
Q ss_pred cCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHH-HHHHHH
Q psy2962 332 KGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWF-VCSLTY 410 (690)
Q Consensus 332 ~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~-~~~~~~ 410 (690)
+.+ ++........ . .......++.....+..+++|.+++..+..++.+. ......
T Consensus 218 ~~~-~~~~~~~~~~----------------------~-~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~~~~~~~ 273 (468)
T TIGR00788 218 RIG-TYLEMNMALL----------------------T-LGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYANLPGASG 273 (468)
T ss_pred ccc-ccchhhhhhh----------------------h-hhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhhcCCCCc
Confidence 000 0000000000 0 00000000001134445677777765444444111 111111
Q ss_pred HHHhhccCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCC--------ChhHH
Q psy2962 411 YGLSWNTANLGG---NIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPL--------DLNTV 479 (690)
Q Consensus 411 ~~~~~~~~~l~~---~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~--------~~~~~ 479 (690)
....+....++. ..+......++.++++..+.+++.+|++.|+.+.++.++.+++.+....... ...+.
T Consensus 274 ~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~ 353 (468)
T TIGR00788 274 SVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVF 353 (468)
T ss_pred eeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeee
Confidence 111122233443 3455666677888999999999999999999999888888877655332110 11223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 480 SIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 480 ~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
.....++..++.+..+.....++.+..|++.+++.+|+.+.+.++|..+++.+++.
T Consensus 354 ~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~ 409 (468)
T TIGR00788 354 VLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVL 409 (468)
T ss_pred eeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777778888889999999999999999999999999999999988776
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.4e-17 Score=175.92 Aligned_cols=310 Identities=18% Similarity=0.210 Sum_probs=227.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcc----ccCCcH-HHHHHHHHHHHHHhhhhcc-c-------cHHHHHHHHHHHHh
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISD----RFGRKP-TFMISILIMDVFGTLAAFA-P-------DFWTFTACRLIVGA 251 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsD----r~Grr~-~ll~~~~l~~i~~~~~~~s-~-------s~~~l~~~R~l~G~ 251 (690)
+...|++..+..+-.++..|+.|.++| |+|||+ .++++.++.+++.+++... | ....+.+.-++..+
T Consensus 36 ~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~ 115 (428)
T PF13347_consen 36 PALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDI 115 (428)
T ss_pred HHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHH
Confidence 678888888888888999999999999 899755 6667888888888777766 4 23345777777799
Q ss_pred hhhhhHHHHHHHHhhhcC-CCcchhhhhHHHHHHHHHHHHHHHHHHHh----h------hchHHHHHHHHHHHHHHHH-H
Q psy2962 252 STSGVFLVAYVLALEMVG-PSKRIIAGTVIHMFFSIGFLLIAGLAYFV----H------DWRHLDILVTLPGLIYLAY-W 319 (690)
Q Consensus 252 ~~g~~~~~~~~~i~e~~~-~~~R~~~~~~~~~~~~lG~~l~~~l~~~l----~------~Wr~~~~i~~i~~ll~~~~-~ 319 (690)
+.........++..|..+ +++|.+..+.-..+..+|.++...+...+ . +|++..++.+++.++..+. .
T Consensus 116 ~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~ 195 (428)
T PF13347_consen 116 AYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITF 195 (428)
T ss_pred hhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999998 57899999998888888886554444433 1 6899888888887776544 4
Q ss_pred HHhcCchhHHHhcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHH
Q psy2962 320 WFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVII 399 (690)
Q Consensus 320 ~~lpesp~~l~~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 399 (690)
+..+|.++ + .+++.++..-...+++++|+|.++...+..
T Consensus 196 ~~~ke~~~------~-----------------------------------~~~~~~~~~~~~~~~~~~~nr~~~~l~~~~ 234 (428)
T PF13347_consen 196 FFVKERSV------E-----------------------------------VTEQEKKISLRDSLRSLFRNRPFRILLLAF 234 (428)
T ss_pred heeeeccc------c-----------------------------------ccccccccccccchhhhcccchHHHHHHHH
Confidence 44565110 0 111112223345678889999988877777
Q ss_pred HHHHHHHHHHHHHHhhccC-CCC--chHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCCh
Q psy2962 400 FFLWFVCSLTYYGLSWNTA-NLG--GNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDL 476 (690)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~-~l~--~~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~ 476 (690)
++.++..........++.+ .++ ........+..+..+++.++.+++.||+|+|+.+..+.++.+++.+.+.+.+..+
T Consensus 235 ~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (428)
T PF13347_consen 235 FLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGS 314 (428)
T ss_pred HHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhh
Confidence 6665543332222222211 112 2233334456677788999999999999999999999999999988888876455
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 477 NTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTV-------IRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 477 ~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~-------~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
.+..++..++.+++.+..+...+++.+|+.+.+ ..|...|+.++...++..+++.+.+.
T Consensus 315 ~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~ 380 (428)
T PF13347_consen 315 PWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGL 380 (428)
T ss_pred HHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 677777788888999999999999999998743 34888899999999999999988775
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-15 Score=166.45 Aligned_cols=307 Identities=13% Similarity=0.081 Sum_probs=193.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcccc----CCcHHH-HHHHHHHHHHHhhhh-----cccc--HHHHHHHHHHHHhh
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRF----GRKPTF-MISILIMDVFGTLAA-----FAPD--FWTFTACRLIVGAS 252 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~----Grr~~l-l~~~~l~~i~~~~~~-----~s~s--~~~l~~~R~l~G~~ 252 (690)
..++|++.++..+..++..++.|+++||. |||+.. +++.+...+.+++.. ++++ ...+++.-++.+++
T Consensus 43 ~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (448)
T PRK09848 43 AAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLC 122 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999996 776644 555554444444321 1222 23344556677888
Q ss_pred hhhhHHHHHHHHhhhcCC-CcchhhhhHHHHHHH-----HHHHHHHHHHHHhh-----hchHHHHHHHHHHHHHH-HHHH
Q psy2962 253 TSGVFLVAYVLALEMVGP-SKRIIAGTVIHMFFS-----IGFLLIAGLAYFVH-----DWRHLDILVTLPGLIYL-AYWW 320 (690)
Q Consensus 253 ~g~~~~~~~~~i~e~~~~-~~R~~~~~~~~~~~~-----lG~~l~~~l~~~l~-----~Wr~~~~i~~i~~ll~~-~~~~ 320 (690)
.+...+...++..+...+ ++|.+..++-..+.+ +|..++|.++.... +|.....+.++.+++.. +...
T Consensus 123 ~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~ 202 (448)
T PRK09848 123 YSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFK 202 (448)
T ss_pred HHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHc
Confidence 888887777777777754 678887766554433 45555666665432 12212222222222222 2222
Q ss_pred HhcCchhHHHhcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHH
Q psy2962 321 FIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIF 400 (690)
Q Consensus 321 ~lpesp~~l~~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~ 400 (690)
..||++. . +.++......++.++|+|.++...++.+
T Consensus 203 ~~~e~~~------------------------------------------~--~~~~~~~~~~~~~l~~n~~f~~~~~~~~ 238 (448)
T PRK09848 203 STRENVV------------------------------------------R--IVAQPSLKISLQTLKRNRPLFMLCIGAL 238 (448)
T ss_pred CcEeccC------------------------------------------C--CccCCCHHHHHHHHhCCchHHHHHHHHH
Confidence 2344321 0 0000011223567889998887776666
Q ss_pred HHHHHHHHHHHHHhhc-cCCCCchHHHHH---HHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCCh
Q psy2962 401 FLWFVCSLTYYGLSWN-TANLGGNIYLNF---IISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDL 476 (690)
Q Consensus 401 ~~~~~~~~~~~~~~~~-~~~l~~~~~~~~---~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~ 476 (690)
+.+..........+++ ...++.+..... ....+..+++.++.+++.||+|+|+.+..+.++.+++++.+.+.+...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~ 318 (448)
T PRK09848 239 CVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWS 318 (448)
T ss_pred HHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchh
Confidence 6555444433333333 333443322221 122345667888899999999999999999888888777766655444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 477 NTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTV-------IRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 477 ~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~-------~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
.+...+..++.+++.+...+...++.+|..|.+ .+|...|+.++...+|..+++.+.+.
T Consensus 319 ~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~ 384 (448)
T PRK09848 319 LPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAF 384 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 454445556677788888888888888888754 35888999999999999999998875
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-15 Score=160.72 Aligned_cols=312 Identities=17% Similarity=0.200 Sum_probs=225.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccc----cCC-cHHHHHHHHHHHHHHhhhhcccc------HHHHHHHHHHHHhhh
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDR----FGR-KPTFMISILIMDVFGTLAAFAPD------FWTFTACRLIVGAST 253 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr----~Gr-r~~ll~~~~l~~i~~~~~~~s~s------~~~l~~~R~l~G~~~ 253 (690)
...+|.+..+--+--++.-|+.|.++|| +|| |+.++.+.+..++.+.++-.+++ ....++.-.+.+++.
T Consensus 47 ~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~Y 126 (467)
T COG2211 47 AALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGY 126 (467)
T ss_pred HHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHH
Confidence 5666777667777777889999999995 787 66788888888988888887763 445667788889999
Q ss_pred hhhHHHHHHHHhhhcC-CCcchhhhhHHHHHHHHHHHHHHHHHHHh----------hhchHHHHHHHHHHHHHHHHHHH-
Q psy2962 254 SGVFLVAYVLALEMVG-PSKRIIAGTVIHMFFSIGFLLIAGLAYFV----------HDWRHLDILVTLPGLIYLAYWWF- 321 (690)
Q Consensus 254 g~~~~~~~~~i~e~~~-~~~R~~~~~~~~~~~~lG~~l~~~l~~~l----------~~Wr~~~~i~~i~~ll~~~~~~~- 321 (690)
......-.++..|..+ ++||.+..++-..+..+|.++...+...+ .+|+..-.+.++++.+..+.+++
T Consensus 127 T~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~ 206 (467)
T COG2211 127 TLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFN 206 (467)
T ss_pred HheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888899999986 78899999999999999977654443332 15787777777777776655444
Q ss_pred hcCchhHHHhcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHH
Q psy2962 322 IPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFF 401 (690)
Q Consensus 322 lpesp~~l~~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 401 (690)
..|.+. ++. ..++..+.+.+..+..++||++++...+..++
T Consensus 207 v~ER~~---------~~~------------------------------~~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l~ 247 (467)
T COG2211 207 VKERVV---------ETQ------------------------------PTKTGVKLKLKDSFLLIFKNRPLLLLLLMNLL 247 (467)
T ss_pred hhcccC---------ccc------------------------------cCcccccccHHHHHHHHHccchHHHHHHHHHH
Confidence 444321 000 00000111112234467899998887776555
Q ss_pred HHHHHHHHHHHHhhc----cCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChh
Q psy2962 402 LWFVCSLTYYGLSWN----TANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLN 477 (690)
Q Consensus 402 ~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~ 477 (690)
.+....+......++ ...-...........+...+.+.++...+.+|+|+|+++.++.++..++.+++.+.+.++.
T Consensus 248 ~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~ 327 (467)
T COG2211 248 LFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSV 327 (467)
T ss_pred HHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcch
Confidence 555444333333333 2222233445555666667777899999999999999999999999999999999886666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccch-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 478 TVSIVLAMMGKFFITGAYGAVYIFSAEQFPT-------VIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 478 ~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~-------~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
++.++..++..++.+...++.+++.+|...- +.-|...|...++..+|.+++..+.++
T Consensus 328 ~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~ 392 (467)
T COG2211 328 VLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW 392 (467)
T ss_pred HHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777888899999999999999998643 233777888899999999999988887
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-14 Score=160.37 Aligned_cols=306 Identities=12% Similarity=0.110 Sum_probs=191.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccc----cCCc-HHHHHHHHHHHHHHhhhhcccc------HHHHHHHHHHHHhhh
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDR----FGRK-PTFMISILIMDVFGTLAAFAPD------FWTFTACRLIVGAST 253 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr----~Grr-~~ll~~~~l~~i~~~~~~~s~s------~~~l~~~R~l~G~~~ 253 (690)
+..+|++..+.-+--++..|+.|.++|| +||| +.++++.+..+++.+++-..|+ ...+.+.-++..++.
T Consensus 44 ~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~ 123 (460)
T PRK11462 44 AGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLY 123 (460)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHH
Confidence 5677888888888888999999999996 7885 5666677777777766654442 344666667778888
Q ss_pred hhhHHHHHHHHhhhcC-CCcchhhhhHHHHHHHHHHHHHHHHHHHh----------hhchHHHHHHHHHHHHHHHHHHH-
Q psy2962 254 SGVFLVAYVLALEMVG-PSKRIIAGTVIHMFFSIGFLLIAGLAYFV----------HDWRHLDILVTLPGLIYLAYWWF- 321 (690)
Q Consensus 254 g~~~~~~~~~i~e~~~-~~~R~~~~~~~~~~~~lG~~l~~~l~~~l----------~~Wr~~~~i~~i~~ll~~~~~~~- 321 (690)
......-.++..|..+ +++|++..++...+..+|.++++.+...+ .+|+....+.++++++.....+.
T Consensus 124 t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~ 203 (460)
T PRK11462 124 TVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFT 203 (460)
T ss_pred HHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 8888888899999997 78899999999999998887766554332 14677666666665555433332
Q ss_pred hcCchhHHHhcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHH
Q psy2962 322 IPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFF 401 (690)
Q Consensus 322 lpesp~~l~~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 401 (690)
.+|.++ + +.++...+..++.+++|+.++......++
T Consensus 204 ~kE~~~---------~-----------------------------------~~~~~~~~~~l~~~~~Nk~~~~l~~~~~~ 239 (460)
T PRK11462 204 TKERVE---------A-----------------------------------PPTTTSMREDLRDIWQNDQWRIVGLLTIF 239 (460)
T ss_pred ceeccC---------C-----------------------------------CccCCCHHHHHHHHhCChHHHHHHHHHHH
Confidence 333211 0 00000012235567788877665544333
Q ss_pred HHHHH----HHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChh
Q psy2962 402 LWFVC----SLTYYGLSWNTANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLN 477 (690)
Q Consensus 402 ~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~ 477 (690)
.+... ....|...+.... ...........++..+++.++++++.||+++|+.+..+..+.++..+++.+.+....
T Consensus 240 ~~~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (460)
T PRK11462 240 NILAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQAS 318 (460)
T ss_pred HHHHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHH
Confidence 33322 2222222222211 111122344556777888999999999999998876555544443444444444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccch-----HHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 478 TVSIVLAMMGKFFITGAYGAVYIFSAEQFPT-----VIR--NIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 478 ~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~-----~~r--~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+...+..++.+++.+...+..+.+.+|...- ..| |...+..+.+..+|..+++.+.++
T Consensus 319 ~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~ 383 (460)
T PRK11462 319 ITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGW 383 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344445555556566667777777552 233 444566668888999999888775
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-13 Score=151.43 Aligned_cols=341 Identities=9% Similarity=-0.044 Sum_probs=197.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcccc-CCcHHHHHHHHHHHHHHhhhhccc-cHHHHHHHHHHHHhhhhhhHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRF-GRKPTFMISILIMDVFGTLAAFAP-DFWTFTACRLIVGASTSGVFLVAYV 262 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~-Grr~~ll~~~~l~~i~~~~~~~s~-s~~~l~~~R~l~G~~~g~~~~~~~~ 262 (690)
..+.+.+.+.+.+...++.+++|+++||+ |||++++++.++.+++.++.++.. +...+.++..+.++|.|...+...+
T Consensus 44 ~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~a 123 (493)
T PRK15462 44 DNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSC 123 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHH
Confidence 56788899999999999999999999999 999999999999999988776543 2233444444555666666677788
Q ss_pred HHhhhcCCC--cchhhhhHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHHhcCchhHHHh-----c
Q psy2962 263 LALEMVGPS--KRIIAGTVIHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAYWWFIPESARWLIS-----K 332 (690)
Q Consensus 263 ~i~e~~~~~--~R~~~~~~~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~-----~ 332 (690)
++.|.+|++ +|..+.++...+.++|..++|.+..++. +|++.|.+.++..++.++.+++..+ ++.. +
T Consensus 124 lv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~~~~---~l~~~~~~~~ 200 (493)
T PRK15462 124 LLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLCGNR---HFTHTRGVNK 200 (493)
T ss_pred HHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHHhhh---hhccCCCCCC
Confidence 999999876 6999999999999999999999999883 7999999876644433333322111 0100 0
Q ss_pred CCHHHHHHHH--H-H----------HH-H-HcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcH--HHHH
Q psy2962 333 GRNEEAKLII--Q-A----------VA-E-ENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPN--LFKK 395 (690)
Q Consensus 333 ~~~~ea~~~l--~-~----------~~-~-~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~ 395 (690)
...++.+... . . +. . ... ............. ....--.-...+ .+ +.-|+|- +...
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~---~~--~~er~r~~~~~~l 273 (493)
T PRK15462 201 KVLRATNFLLPNWGWLLVLLVATPALITVLFWK-EWSVYALIVATII-GLGVLAKIYRKA---EN--QKQRKELGLIVTL 273 (493)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHHHhc---CC--HHHHhhHHHHHHH
Confidence 0000000000 0 0 00 0 000 0000000000000 000000000000 00 0001111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCC------CC--chHHHHHHHHHHHHHHHHHHHHHHHhhcCC--hh-----HHHHHHH
Q psy2962 396 SVIIFFLWFVCSLTYYGLSWNTAN------LG--GNIYLNFIISGMVEIPAYLSSMLTLDRYGR--KN-----FLCPCLI 460 (690)
Q Consensus 396 ~l~~~~~~~~~~~~~~~~~~~~~~------l~--~~~~~~~~~~~l~~i~~~~~~~~l~dr~gr--r~-----~l~~~~~ 460 (690)
.+...+.|......+..+.++.++ ++ ..+.+...+..+.-++..++..++-.|..| |. -...+++
T Consensus 274 ~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~ 353 (493)
T PRK15462 274 TFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLG 353 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHH
Confidence 222223343333333333322211 12 234455566666666666665555555522 21 2567778
Q ss_pred HHHHHHHHHHhc----CC---ChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy2962 461 LSGLCLIVSALL----PL---DLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFA-RVGGIFASYT 532 (690)
Q Consensus 461 ~~~i~~l~~~~~----~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~-~lg~~i~p~i 532 (690)
+++++++.+.+. .. .+.++.+...++...+.-...|+..+.++++.|++.|+..+|+..... .+|..++..+
T Consensus 354 ~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~ 433 (493)
T PRK15462 354 LMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVI 433 (493)
T ss_pred HHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887666432 11 234556666677778888999999999999999999999999986643 5777777666
Q ss_pred HHH
Q psy2962 533 SVL 535 (690)
Q Consensus 533 ~~~ 535 (690)
...
T Consensus 434 ~~~ 436 (493)
T PRK15462 434 ADQ 436 (493)
T ss_pred HHH
Confidence 655
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-14 Score=150.37 Aligned_cols=346 Identities=15% Similarity=0.146 Sum_probs=218.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHH--HHHHh-hhhcc----ccHH-HHHHHHHHHHhhhhhh
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIM--DVFGT-LAAFA----PDFW-TFTACRLIVGASTSGV 256 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~--~i~~~-~~~~s----~s~~-~l~~~R~l~G~~~g~~ 256 (690)
..++|.+.++..+..++.+++.|.++||+|.||-++..+.+. ..+.+ ...+. .|++ ..+++-+..|+...+.
T Consensus 42 ~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~ 121 (412)
T PF01306_consen 42 GTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAG 121 (412)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 789999999999999999999999999999766554433222 22222 21222 2332 3344444556666666
Q ss_pred HHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhhh--chHHHHHHHHHHHHHHHHHHHh-cCchhHHHhcC
Q psy2962 257 FLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHD--WRHLDILVTLPGLIYLAYWWFI-PESARWLISKG 333 (690)
Q Consensus 257 ~~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~~--Wr~~~~i~~i~~ll~~~~~~~l-pesp~~l~~~~ 333 (690)
.++.-+++.++. ++.+.-.|-.-+..++|.+++..+++.+.+ =...|++..+.+++..++.++. |+.++..
T Consensus 122 ~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~---- 195 (412)
T PF01306_consen 122 VPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAIILLLLLLLLKPDVPPQA---- 195 (412)
T ss_dssp HHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SSSSS----
T ss_pred chHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHHHHHHHHcCCcCchhh----
Confidence 777777777665 333444556666777777777777777643 3456777666655554443333 3322100
Q ss_pred CHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHHH-HH
Q psy2962 334 RNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTY-YG 412 (690)
Q Consensus 334 ~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~-~~ 412 (690)
+.. + ....++++.......+++|+|++|...+.....+......- ..
T Consensus 196 ------------------~~~----~----------~~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y~vfdqqf 243 (412)
T PF01306_consen 196 ------------------EVA----D----------ALGAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIYDVFDQQF 243 (412)
T ss_dssp -------------------SS----T----------TSSS------HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------hhh----c----------ccccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 00000001111235688999999987776555544332221 11
Q ss_pred HhhccCCC-----Cch-HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHH
Q psy2962 413 LSWNTANL-----GGN-IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMM 486 (690)
Q Consensus 413 ~~~~~~~l-----~~~-~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l 486 (690)
..++...+ +.. .+....+..+.|++...++.++.+|+|.|+.++++..++.+=.++.++.++ ++.....-++
T Consensus 244 ~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~--~~~i~~~klL 321 (412)
T PF01306_consen 244 PIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATN--PWVISLIKLL 321 (412)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--S--HHHHHHHHHH
T ss_pred HHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcc--hHHHHHHHHH
Confidence 11222111 211 334455666889999999999999999999999999999999888887754 5666667778
Q ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHccccccccCccccccccccccchhhccccC
Q psy2962 487 GKFFITGAYGAVYIFSAEQFPTVIRNIGIGAG-STFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKT 565 (690)
Q Consensus 487 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~-~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 565 (690)
.++-.........-|+++.+|++..++...+. +....+|.++.+.+.|... +
T Consensus 322 H~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~ly------d--------------------- 374 (412)
T PF01306_consen 322 HALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLY------D--------------------- 374 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH------H---------------------
T ss_pred HHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhH------h---------------------
Confidence 88888888888899999999999999999886 5667799888888888621 2
Q ss_pred CCcchhhccccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHhh-hccCCCCCC
Q psy2962 566 MPKEQITRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSL-ILPETHHKK 621 (690)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~lpet~~~~ 621 (690)
..+....+++.+.+.++..++.. .+++.++..
T Consensus 375 ------------------------~~G~~~tylimg~iv~~~~li~~f~l~~~~~~~ 407 (412)
T PF01306_consen 375 ------------------------RIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQI 407 (412)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHHHHHHS--SSSTT
T ss_pred ------------------------hcCcHHHHHHHHHHHHHHHHHheeeecCCCccc
Confidence 45666788888888777777765 565554433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.4e-14 Score=146.62 Aligned_cols=254 Identities=12% Similarity=0.071 Sum_probs=174.7
Q ss_pred ccccHHHHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh---------------
Q psy2962 235 FAPDFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH--------------- 299 (690)
Q Consensus 235 ~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~--------------- 299 (690)
...+|+.++++-|+.|.|.+...+....++.+..+++++++.+++.+.++++|.+++|.++..+.
T Consensus 6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~ 85 (310)
T TIGR01272 6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN 85 (310)
T ss_pred HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence 45789999999999999999999999999999999999999999999999999999999998542
Q ss_pred ----hchHHHHHHHHHHHHHHHHHHHh--cCchhHHHhcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhh
Q psy2962 300 ----DWRHLDILVTLPGLIYLAYWWFI--PESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLK 373 (690)
Q Consensus 300 ----~Wr~~~~i~~i~~ll~~~~~~~l--pesp~~l~~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~ 373 (690)
+|++++++.++..++..+.+.++ ||... ++. ++.
T Consensus 86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~--------~~~-------------------------------~~~- 125 (310)
T TIGR01272 86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE--------ADV-------------------------------ARV- 125 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc--------ccc-------------------------------ccc-
Confidence 58999997776655555444444 44210 000 000
Q ss_pred hhcCCCCccchhhccCcHHHHHHHHHHHHHHH-HHHHHHHHhhccC--CCCc---hHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2962 374 AQNDGPKPSIFELFRHPNLFKKSVIIFFLWFV-CSLTYYGLSWNTA--NLGG---NIYLNFIISGMVEIPAYLSSMLTLD 447 (690)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~--~l~~---~~~~~~~~~~l~~i~~~~~~~~l~d 447 (690)
. +++....++++|+|.++...+..++.... .+...+...+..+ .++. .............++|+++++++.|
T Consensus 126 ~--~~~~~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~ 203 (310)
T TIGR01272 126 S--SGDTTQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMP 203 (310)
T ss_pred c--cccccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000112355666666544333333322 2333334444432 2332 2344456666778899999999999
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHH
Q psy2962 448 RYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGI 527 (690)
Q Consensus 448 r~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~ 527 (690)
|+|+|+.+..+..+..++.++....+. . ......++.+++.+..+|...+...+.+|++ .+++.++. .++.+|++
T Consensus 204 r~g~~~~l~~~~~l~~~~~~l~~~~~~--~-~~~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~ 278 (310)
T TIGR01272 204 MISQGRYLAFNAFLAVLLSIGAALTHG--Y-VAMWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGA 278 (310)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHcCC--H-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcch
Confidence 999999888877777766655544432 2 2233445667999999999999999988865 45666664 67789999
Q ss_pred HHHHHHHH
Q psy2962 528 FASYTSVL 535 (690)
Q Consensus 528 i~p~i~~~ 535 (690)
+.|.+.|.
T Consensus 279 i~P~l~G~ 286 (310)
T TIGR01272 279 IVPLLQGS 286 (310)
T ss_pred HHHHHHHH
Confidence 99998886
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-14 Score=147.50 Aligned_cols=313 Identities=15% Similarity=0.109 Sum_probs=220.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcH-HHHHHHHHHHHHHhhhhcccc--H-HHHHHHHHHHHhhhhhhHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKP-TFMISILIMDVFGTLAAFAPD--F-WTFTACRLIVGASTSGVFLVA 260 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~-~ll~~~~l~~i~~~~~~~s~s--~-~~l~~~R~l~G~~~g~~~~~~ 260 (690)
+...+...++..+-.++-+|+.|.++|+.|+|| .+-....+..++.++..++++ + +..++.-.+..++.....+.-
T Consensus 57 ~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfy 136 (438)
T COG2270 57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFY 136 (438)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheeh
Confidence 567788888888999999999999999999755 555556666666677777655 4 445566777888888888999
Q ss_pred HHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---h------------------hchHHHHHHHHHHHHHHH-H
Q psy2962 261 YVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---H------------------DWRHLDILVTLPGLIYLA-Y 318 (690)
Q Consensus 261 ~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---~------------------~Wr~~~~i~~i~~ll~~~-~ 318 (690)
.+++.+..++++-++..++-.....+|.++.-++.... . +-|..+.+.++--++..+ .
T Consensus 137 ds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm 216 (438)
T COG2270 137 DSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPM 216 (438)
T ss_pred hhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHH
Confidence 99999999999988888776666666666544443221 0 246666666666555543 3
Q ss_pred HHHhcCchhHHHhcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHH
Q psy2962 319 WWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVI 398 (690)
Q Consensus 319 ~~~lpesp~~l~~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~ 398 (690)
++..++.++ .+..+++.. ...-++-..+++++.+++++.+.++.
T Consensus 217 ~~~v~~~~~-----~~~~~~~~l-------------------------------~~g~k~L~~t~k~i~~~~~i~~FLiA 260 (438)
T COG2270 217 ILNVHDAEK-----ISSPPPTAL-------------------------------RNGFKELKSTFKEIRGRKNLVLFLIA 260 (438)
T ss_pred Hhccccccc-----ccccchHHH-------------------------------HHHHHHHHHHHHHHhcccchHHHHHH
Confidence 333444332 000000000 00001123345666677776666655
Q ss_pred HHHHHH-HHHHHHHHHhhccCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCC
Q psy2962 399 IFFLWF-VCSLTYYGLSWNTANLGG---NIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPL 474 (690)
Q Consensus 399 ~~~~~~-~~~~~~~~~~~~~~~l~~---~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~ 474 (690)
.++..- .+.....+-.+....++. +..+......++.++|+++.+++.+|+|.|+++..++++..+.++...+...
T Consensus 261 ~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~ 340 (438)
T COG2270 261 RFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEG 340 (438)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccc
Confidence 544332 444555555555555653 4556666777888999999999999999999999999888888877776644
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 475 DLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 475 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
.....++.++.+.+.+..++..-++..++.|+++-+..+|+.+..++.+++++|+..+.
T Consensus 341 --~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v 399 (438)
T COG2270 341 --ELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAV 399 (438)
T ss_pred --cHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHH
Confidence 33455666777899999999999999999999999999999999999999999999986
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.7e-15 Score=141.56 Aligned_cols=320 Identities=13% Similarity=0.033 Sum_probs=197.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccc-cCCcHHHHHHHHHHHHHHhhhhc---cccHHHHHHHHHHHHhhhhhhHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDR-FGRKPTFMISILIMDVFGTLAAF---APDFWTFTACRLIVGASTSGVFLVA 260 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr-~Grr~~ll~~~~l~~i~~~~~~~---s~s~~~l~~~R~l~G~~~g~~~~~~ 260 (690)
..+..++-++|..-..+-++++|++.|| +|-|..-++-.....+|-++.+. ++.+|+++++||+.|+|.-...++.
T Consensus 78 ~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQ 157 (459)
T KOG4686|consen 78 YAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQ 157 (459)
T ss_pred eeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhh
Confidence 3577788899999999999999999996 68887766666666777766654 6889999999999999999999999
Q ss_pred HHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHH---HHHHHhcCchhHHHhcC-CHH
Q psy2962 261 YVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHDWRHLDILVTLPGLIYL---AYWWFIPESARWLISKG-RNE 336 (690)
Q Consensus 261 ~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~~Wr~~~~i~~i~~ll~~---~~~~~lpesp~~l~~~~-~~~ 336 (690)
..++.-|+..|+.+.++|+.....-+|..+-..+..++.+.-.-++-......+.+ +-.....-|-.-..+.+ ..+
T Consensus 158 N~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~ 237 (459)
T KOG4686|consen 158 NKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDD 237 (459)
T ss_pred cceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999888888876644333333221111110000000000 00000000000011111 122
Q ss_pred HHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhcc-CcHHHHHHHHHHHHHHHHHHHH--HHH
Q psy2962 337 EAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFR-HPNLFKKSVIIFFLWFVCSLTY--YGL 413 (690)
Q Consensus 337 ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~l~~~~~~~~~~~~~--~~~ 413 (690)
+|++.+.+- ++. ..+...+.+... .|.+|...+++.+ +....+.+ .+.
T Consensus 238 rAerilh~e---~g~-------------------------~Ge~pkLtdv~~f~ppfw~~~iicv~-yyva~fPFi~lg~ 288 (459)
T KOG4686|consen 238 RAERILHLE---EGF-------------------------LGEEPKLTDVNTFYPPFWVLVIICVL-YYVAWFPFITLGP 288 (459)
T ss_pred HHHHHHhhh---cCc-------------------------ccCCcccccccccCccHHHHHHHHHH-HHHHHHHHhhhhH
Confidence 333333221 100 001111112211 2556654444333 33222233 345
Q ss_pred hhccCCCCchHHHHHH---HHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q psy2962 414 SWNTANLGGNIYLNFI---ISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFF 490 (690)
Q Consensus 414 ~~~~~~l~~~~~~~~~---~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~ 490 (690)
.++.+.+|.++..... ..-....+...+.|.++||+|++...+.+..+..+..=...++..-++| +.+.+.+..
T Consensus 289 ~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~lsPy---~~m~~lGLs 365 (459)
T KOG4686|consen 289 MFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLSPY---TSMTFLGLS 365 (459)
T ss_pred HHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhccHH---HHHHHHhhh
Confidence 5667777755433333 3334455677788999999999987776655544433333333222233 344455566
Q ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q psy2962 491 ITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLE 536 (690)
Q Consensus 491 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~ 536 (690)
++......+..++-+.|++..|++.|+++.+.++|-++.|.+.+.+
T Consensus 366 ysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i 411 (459)
T KOG4686|consen 366 YSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFI 411 (459)
T ss_pred HHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhhee
Confidence 6666667888889999999999999999999999999999999873
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.2e-13 Score=149.64 Aligned_cols=160 Identities=18% Similarity=0.097 Sum_probs=124.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhh---hhccccHHHHHHHHHHHHhhhhhhHHHHHH
Q psy2962 186 WYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTL---AAFAPDFWTFTACRLIVGASTSGVFLVAYV 262 (690)
Q Consensus 186 ~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~---~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~ 262 (690)
...++..+...++..++.++.|+++||+|||++++++.++..++.+. ...+++...++++|++.|++.+........
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~ 365 (490)
T PRK10642 286 DHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMAS 365 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667778889999999999999999999999988877654433322 223556788888999999988877778888
Q ss_pred HHhhhcCCCcchhhhhH-HHHHHHHHHHHHHHHHHHh----hhchHHHHHHHHHHHHHHHHHHHhcCchhHHHhc-----
Q psy2962 263 LALEMVGPSKRIIAGTV-IHMFFSIGFLLIAGLAYFV----HDWRHLDILVTLPGLIYLAYWWFIPESARWLISK----- 332 (690)
Q Consensus 263 ~i~e~~~~~~R~~~~~~-~~~~~~lG~~l~~~l~~~l----~~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~----- 332 (690)
++.|.+|++.|+.+.++ ++.+... ..++|.+..++ .+|+..+++..+++++.++..+++||+|+|+..+
T Consensus 366 ~~~~~~p~~~Rg~~~g~~~~~~~~~-g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~~~~~ 444 (490)
T PRK10642 366 TLPAMFPTHIRYSALAAAFNISVLV-AGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGATPAA 444 (490)
T ss_pred HHHHHCCCccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCccccc
Confidence 89999999999998886 5555444 45566555544 2478777777777777777777889999999865
Q ss_pred CCHHHHHHHHHHHH
Q psy2962 333 GRNEEAKLIIQAVA 346 (690)
Q Consensus 333 ~~~~ea~~~l~~~~ 346 (690)
+|.+||++.+++++
T Consensus 445 ~~~~~a~~~l~~~~ 458 (490)
T PRK10642 445 SDIQEAKEILVEHY 458 (490)
T ss_pred cchhhHHHHhhccc
Confidence 99999999999885
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.6e-12 Score=130.83 Aligned_cols=314 Identities=13% Similarity=0.034 Sum_probs=210.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccc------cHH--HHHHHHHHHHhhhhhh
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAP------DFW--TFTACRLIVGASTSGV 256 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~------s~~--~l~~~R~l~G~~~g~~ 256 (690)
....-|..-+|++.+....+++-|+.|++|-|..++++..+.++|+.+-..+. .++ ....+..+.+.+.-..
T Consensus 78 ~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fi 157 (480)
T KOG2563|consen 78 SSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFI 157 (480)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHh
Confidence 45567888999999999999999999999999999999999999999877653 344 6667888888877777
Q ss_pred HHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh---------hchH--HHHHHHHHHHHHHHH-HHHhcC
Q psy2962 257 FLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH---------DWRH--LDILVTLPGLIYLAY-WWFIPE 324 (690)
Q Consensus 257 ~~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~---------~Wr~--~~~i~~i~~ll~~~~-~~~lpe 324 (690)
......+..-|+++++|..+..+-.++..+|.+++.++...+. .|-. +|+..+..+.+.+++ .+..++
T Consensus 158 m~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~ 237 (480)
T KOG2563|consen 158 LGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTK 237 (480)
T ss_pred hccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 7766778889999999999999999998999998888877762 2543 344444443333322 222333
Q ss_pred chhHHHhcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHH
Q psy2962 325 SARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWF 404 (690)
Q Consensus 325 sp~~l~~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~ 404 (690)
.|+.-. .. .+.......-..++++.++++++....++..+...
T Consensus 238 ~P~tPp-----s~--------------------------------s~~~~~~~~f~~si~~~~~n~~F~il~~~ygi~~g 280 (480)
T KOG2563|consen 238 KPPTPP-----SA--------------------------------SQAALQDASFPKSIKSCFKNRQFIILAICYGIGLG 280 (480)
T ss_pred CCCCCC-----ch--------------------------------hHhhhhcCcHHHHHHHHHcCccHHHHHHHHhhhHH
Confidence 332100 00 00000111234567888999887766665555444
Q ss_pred HHHHHHHHHhhc--cCCC-CchHHHHHHHHHHHHHHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHHHHhc--CCChhH
Q psy2962 405 VCSLTYYGLSWN--TANL-GGNIYLNFIISGMVEIPAYLSSMLTLDRYGR-KNFLCPCLILSGLCLIVSALL--PLDLNT 478 (690)
Q Consensus 405 ~~~~~~~~~~~~--~~~l-~~~~~~~~~~~~l~~i~~~~~~~~l~dr~gr-r~~l~~~~~~~~i~~l~~~~~--~~~~~~ 478 (690)
.....+..+... .++. +...+....+..+.++++.+++|.+.||.+. |.++++.+....++.+.+... .....+
T Consensus 281 ~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~v 360 (480)
T KOG2563|consen 281 LFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSV 360 (480)
T ss_pred HHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceE
Confidence 444444433311 1111 1356677778888899999999999999875 444444444444442222221 112233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 479 VSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 479 ~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+......+.+++..+.+|+-.-+..|..-+..-++..|+.++.+++.+++-.++.+.
T Consensus 361 iv~~t~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~ 417 (480)
T KOG2563|consen 361 IVFTTCGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGI 417 (480)
T ss_pred ehhhhHHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHH
Confidence 444445556677777888888888887655667888999999999998888887765
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-12 Score=117.23 Aligned_cols=133 Identities=23% Similarity=0.361 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHHhhhcCCC
Q psy2962 192 DAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLALEMVGPS 271 (690)
Q Consensus 192 ~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~ 271 (690)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.++..++++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE 83 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence 45677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHH-hcC
Q psy2962 272 KRIIAGTVIHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAYWWF-IPE 324 (690)
Q Consensus 272 ~R~~~~~~~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~~~~-lpe 324 (690)
+|++..++......+|..+++.++..+. +|++.+++.++..++..+..++ .||
T Consensus 84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999988873 6899998888777666544443 444
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-10 Score=122.66 Aligned_cols=344 Identities=15% Similarity=0.033 Sum_probs=203.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhcccc-CCcHHHHHHHHHHHHHHhhhhccc--cHHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2962 187 YRGTSDAFLMMGVLLGSLIFGDISDRF-GRKPTFMISILIMDVFGTLAAFAP--DFWTFTACRLIVGASTSGVFLVAYVL 263 (690)
Q Consensus 187 ~~gli~s~~~lg~~ig~~~~G~lsDr~-Grr~~ll~~~~l~~i~~~~~~~s~--s~~~l~~~R~l~G~~~g~~~~~~~~~ 263 (690)
...-+.++|..-.=+..+++|+++||+ |+|+.++++.++..+|.++.+.+. +...+.++-++.++|.|..-+....+
T Consensus 62 ~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~l 141 (498)
T COG3104 62 HATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSL 141 (498)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHH
Confidence 333444555544556678999999996 999999999999999999999884 78899999999999999999999999
Q ss_pred HhhhcCCCc--chhhhhHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHHhcCchhHHHhcC-----
Q psy2962 264 ALEMVGPSK--RIIAGTVIHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAYWWFIPESARWLISKG----- 333 (690)
Q Consensus 264 i~e~~~~~~--R~~~~~~~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~----- 333 (690)
+.|.+|+++ |...++++.++.++|.+++|.+..++. +|...|.+.++-..+.++.++..+. +...+.
T Consensus 142 lg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r---~~~~~~~~~~~ 218 (498)
T COG3104 142 LGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRR---HVKGIGGVPDP 218 (498)
T ss_pred HHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccc---hhcCCCCCCCc
Confidence 999998654 777889999999999999999999884 6888888888776666655554431 111100
Q ss_pred ---CHHHHHHHHH----HHHHHc-CCcchhhhhhcccCC-CchHHH-HhhhhcCCCCccchhhccCcHHHHHHHHHHHHH
Q psy2962 334 ---RNEEAKLIIQ----AVAEEN-KVILEGFVLDGLLAP-SPEEEE-KLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLW 403 (690)
Q Consensus 334 ---~~~ea~~~l~----~~~~~n-~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 403 (690)
+..+.+.... ...... -.....+........ ...... -.......++.. .+--|-.......+...+.|
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~er~r~~~~~~Lfl~~~iFW 297 (498)
T COG3104 219 NPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVF-DERRRLLAAIPLFLFAVIFW 297 (498)
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccH-HHHHHHHHHHHHHHHHHHHH
Confidence 1111111100 000000 000000000000000 000000 000000000000 00000001112222233334
Q ss_pred HHH-----HHHHHHHhhccCC-CC--chHHHHHHHHHHHHHHHHHHHHHHHhhcCCh-------hHHHHHHHHHHHHHHH
Q psy2962 404 FVC-----SLTYYGLSWNTAN-LG--GNIYLNFIISGMVEIPAYLSSMLTLDRYGRK-------NFLCPCLILSGLCLIV 468 (690)
Q Consensus 404 ~~~-----~~~~~~~~~~~~~-l~--~~~~~~~~~~~l~~i~~~~~~~~l~dr~grr-------~~l~~~~~~~~i~~l~ 468 (690)
... +...|.......+ +| .+..+...+..+.-++..++..++..|.+++ .-+..++++++.++++
T Consensus 298 ~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~ 377 (498)
T COG3104 298 ALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLI 377 (498)
T ss_pred HHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHH
Confidence 322 2223333222222 22 3444555666666666666666666664433 2245566666666665
Q ss_pred HHhc-------C-CChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 469 SALL-------P-LDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSV 534 (690)
Q Consensus 469 ~~~~-------~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~ 534 (690)
+... . ..+.++.+...++..++--+..++...++..+.|+...+..+++-......|..++..+.+
T Consensus 378 l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~ 451 (498)
T COG3104 378 LLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAG 451 (498)
T ss_pred HHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecc
Confidence 5443 1 1234566666677778888888999999999999998888888887777777777666655
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-09 Score=112.27 Aligned_cols=312 Identities=13% Similarity=0.072 Sum_probs=196.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccC-----CcH-HHHHHHHHHHHHHhhhhcc-----c-------cH--H--HH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFG-----RKP-TFMISILIMDVFGTLAAFA-----P-------DF--W--TF 242 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~G-----rr~-~ll~~~~l~~i~~~~~~~s-----~-------s~--~--~l 242 (690)
.+..+.+.++..+... ..+.+|+.||+.+ ||. -+..|.++...+..+.+++ . +. + ..
T Consensus 14 A~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a 92 (403)
T PF03209_consen 14 AWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALA 92 (403)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHH
Confidence 5677777777777655 5789999999999 775 4455666666665555542 2 22 2 24
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh-hhc---hHHHHHHHH--HHHHHH
Q psy2962 243 TACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV-HDW---RHLDILVTL--PGLIYL 316 (690)
Q Consensus 243 ~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l-~~W---r~~~~i~~i--~~ll~~ 316 (690)
.+.-++.|+|.+...++..+++.|..++++|+++.++.....-+|.+++..+.+.+ .+. |....+.++ ..+++.
T Consensus 93 ~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~ 172 (403)
T PF03209_consen 93 ALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLN 172 (403)
T ss_pred HHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHH
Confidence 45567789999999999999999999999999999999999999999988877765 332 222222222 222222
Q ss_pred HHHHHhcCchhHHHhcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHH
Q psy2962 317 AYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKS 396 (690)
Q Consensus 317 ~~~~~lpesp~~l~~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 396 (690)
+...+=.|..+ .+. . ...+.++......++++..+|+.++.+
T Consensus 173 ~ia~wg~E~r~-------~~~--------------~-----------------~~~~~~~~~f~~a~~~~~~~~~a~~f~ 214 (403)
T PF03209_consen 173 LIALWGQEPRR-------SRR--------------A-----------------AAAERPRPPFREAWRQVWASPQARRFF 214 (403)
T ss_pred HHHHHhcccCC-------ccc--------------c-----------------cCCCCCCccHHHHHHHHHhCCChhHHH
Confidence 22222222211 000 0 000001111223466777888877766
Q ss_pred HHHHHHHHHHHHHHHHH-hhccCCCCchHH---HHHHHHHHHHHHHHHHHHHHHh-hcCChhHHHHHHHHHHHHHHHHHh
Q psy2962 397 VIIFFLWFVCSLTYYGL-SWNTANLGGNIY---LNFIISGMVEIPAYLSSMLTLD-RYGRKNFLCPCLILSGLCLIVSAL 471 (690)
Q Consensus 397 l~~~~~~~~~~~~~~~~-~~~~~~l~~~~~---~~~~~~~l~~i~~~~~~~~l~d-r~grr~~l~~~~~~~~i~~l~~~~ 471 (690)
...++..+..++-=-.+ +|--+.++.+.. ....+.+.+.++|..+.+++.. |.++++....+..++.+++.++.+
T Consensus 215 ~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~ 294 (403)
T PF03209_consen 215 VFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIIL 294 (403)
T ss_pred HHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 55544333222211111 122223333332 3344555667788888887766 677777777777777776666554
Q ss_pred c-CCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 472 L-PLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 472 ~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
. +..+.+......++.+++.+.......+...++.+++..|..+|.-.....+...++-++.+.
T Consensus 295 a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~ 359 (403)
T PF03209_consen 295 AGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGA 359 (403)
T ss_pred HHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 233455666666777788887777778888888888888999998888888777777777664
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.9e-11 Score=139.94 Aligned_cols=140 Identities=13% Similarity=0.038 Sum_probs=122.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHHhh
Q psy2962 187 YRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLALE 266 (690)
Q Consensus 187 ~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i~e 266 (690)
...+...+..++.++|.++.|+++||+|||++++++.++.+++.++.+++++...+++++++.|++.++.+++..++++|
T Consensus 596 ~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aE 675 (742)
T TIGR01299 596 MIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVE 675 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777889999999999999999999999999999999999999999998889999999999999999999999999
Q ss_pred hcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh--hchHHHHHHHHHHHHHHHHHHHhcCch
Q psy2962 267 MVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH--DWRHLDILVTLPGLIYLAYWWFIPESA 326 (690)
Q Consensus 267 ~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~--~Wr~~~~i~~i~~ll~~~~~~~lpesp 326 (690)
++|.+.|++++++......+|.+++|.+++.+. +...++++.++..++..++.+++||+.
T Consensus 676 l~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~ 737 (742)
T TIGR01299 676 LYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTR 737 (742)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999999999999987653 334577777777777666677789864
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.6e-13 Score=149.48 Aligned_cols=343 Identities=15% Similarity=0.159 Sum_probs=3.0
Q ss_pred ceeeeCCccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhcc----c----------------
Q psy2962 178 WSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFA----P---------------- 237 (690)
Q Consensus 178 ~~LvC~~~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s----~---------------- 237 (690)
|+|. +.+.|++.+.+-++.++..++..++.+|..|-+.+-+|.++.+++++++++= .
T Consensus 33 F~l~---S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~ 109 (539)
T PF03137_consen 33 FGLS---SSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSI 109 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCC---HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccccccc
Confidence 5554 7899999999999999999999999999878788889999999999887650 0
Q ss_pred ------------------------------cHHHHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHH
Q psy2962 238 ------------------------------DFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIG 287 (690)
Q Consensus 238 ------------------------------s~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG 287 (690)
-+..++++.++.|+|....++...+|+-|.+++++-+...|++.+...+|
T Consensus 110 ~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lG 189 (539)
T PF03137_consen 110 SSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILG 189 (539)
T ss_dssp ------------------------------------------SSS-----------------------------------
T ss_pred ccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhcc
Confidence 03458889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh---------------------h----chHHHHHHHHHHHHHHHHHHHhcCchhHHHhcCCHHHHHHHH
Q psy2962 288 FLLIAGLAYFVH---------------------D----WRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLII 342 (690)
Q Consensus 288 ~~l~~~l~~~l~---------------------~----Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~~~~ea~~~l 342 (690)
.++|.++++.+. . |-.-|++.++..++..+..+++|+.-+ .+.+.++.++.
T Consensus 190 Pa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp---~~~~~~~~~~~- 265 (539)
T PF03137_consen 190 PALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLP---GTSERQEEKES- 265 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC---Ccccccchhhh-
Confidence 999988887651 1 333444555555555555566664321 11011110000
Q ss_pred HHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCC
Q psy2962 343 QAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWF-VCSLTYYGLSWNTANLG 421 (690)
Q Consensus 343 ~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~l~ 421 (690)
++. +..+...+...+. +.........+.-....+++++||.+....+......+ ...+..|.+-+...+++
T Consensus 266 ~~~---~~~~~~~~~~~~~-----~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~ 337 (539)
T PF03137_consen 266 SER---KEEDSDKDSFKDP-----KSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFG 337 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhc---chhhhhhhccccc-----ccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 000 0000000000000 00000011122334567889999988776666655544 45566677777777888
Q ss_pred chHHHHHHHHHHHH----HHHHHHHHHHHhhcC--ChhHHHHHHHHHHHHHHH---HHhc------------CC------
Q psy2962 422 GNIYLNFIISGMVE----IPAYLSSMLTLDRYG--RKNFLCPCLILSGLCLIV---SALL------------PL------ 474 (690)
Q Consensus 422 ~~~~~~~~~~~l~~----i~~~~~~~~l~dr~g--rr~~l~~~~~~~~i~~l~---~~~~------------~~------ 474 (690)
.++.....+.+++. ++|.+++|++++|++ .|..+....+...+..+. ..++ +.
T Consensus 338 ~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~ 417 (539)
T PF03137_consen 338 LSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSS 417 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCC
Confidence 77666666666544 477888999999875 344433333333222222 1111 00
Q ss_pred ----------------------------C---hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH
Q psy2962 475 ----------------------------D---LNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFAR 523 (690)
Q Consensus 475 ----------------------------~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ 523 (690)
+ ..+..+++.++..+..+.........+...+|++.|+.++|+..++.+
T Consensus 418 ~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~AlGv~~~~~r 497 (539)
T PF03137_consen 418 SPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSFALGVQWLIIR 497 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcchhhhHHHHHHH
Confidence 0 011222233334444455555666677788999999999999988876
Q ss_pred -HHHHHHHHHHHH
Q psy2962 524 -VGGIFASYTSVL 535 (690)
Q Consensus 524 -lg~~i~p~i~~~ 535 (690)
+|.+-+|.+.|.
T Consensus 498 llg~IPgPIifG~ 510 (539)
T PF03137_consen 498 LLGFIPGPIIFGA 510 (539)
T ss_dssp -------------
T ss_pred hhcCcchHHHHhH
Confidence 677889999986
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.3e-09 Score=115.73 Aligned_cols=322 Identities=15% Similarity=0.125 Sum_probs=186.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcccc---C--CcHHHHHHHHHHHHHHhhhhcc----ccHHHHHHHHHHHHhhhhh
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRF---G--RKPTFMISILIMDVFGTLAAFA----PDFWTFTACRLIVGASTSG 255 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~---G--rr~~ll~~~~l~~i~~~~~~~s----~s~~~l~~~R~l~G~~~g~ 255 (690)
+.+.....++..+...+- ++.|.++|.+ | ||+-++++.++..++.+..+.. .+.....++-++..+|.+.
T Consensus 24 ~~~~~~~~~~~~lPw~~K-p~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~ 102 (433)
T PF03092_consen 24 PAQLQRLSSLASLPWSIK-PLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAF 102 (433)
T ss_pred HHHHHHHHHHHhCchHHh-hhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHH
Confidence 566777777777777664 7899999986 3 6667777777776666655553 3566777788889999999
Q ss_pred hHHHHHHHHhhhcC--CCcchhhhhHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHHhcCchhHHH
Q psy2962 256 VFLVAYVLALEMVG--PSKRIIAGTVIHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAYWWFIPESARWLI 330 (690)
Q Consensus 256 ~~~~~~~~i~e~~~--~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~ 330 (690)
..+++-+++.|... ++.|+...+.......+|.+++..+++.+. ++|..|.+.++..++..+..+++.|..+
T Consensus 103 ~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~--- 179 (433)
T PF03092_consen 103 ADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEERK--- 179 (433)
T ss_pred HHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhcc---
Confidence 99999999999984 334677777888888899999888887763 5788888877766665544444433110
Q ss_pred hcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHH-HHHHHHHHHHHH
Q psy2962 331 SKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSV-IIFFLWFVCSLT 409 (690)
Q Consensus 331 ~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l-~~~~~~~~~~~~ 409 (690)
.+..+. .....+... .......++.....++.++.+.++...+ ..++..+....
T Consensus 180 --~~~~~~----------------~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~- 234 (433)
T PF03092_consen 180 --VRPADE----------------VFSFGKEEV------PCLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSI- 234 (433)
T ss_pred --ccccch----------------hhccccccc------chhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCC-
Confidence 000000 000000000 0000000111223456666676666555 22211111100
Q ss_pred HHH-Hh-hccCCCC---chHHHHH---HHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhc-CC------
Q psy2962 410 YYG-LS-WNTANLG---GNIYLNF---IISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALL-PL------ 474 (690)
Q Consensus 410 ~~~-~~-~~~~~l~---~~~~~~~---~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~-~~------ 474 (690)
..+ .. +.....+ .+..... .+..++.+.|..+......+..-|+++..+.++..+..+.-..+ ..
T Consensus 235 ~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~G 314 (433)
T PF03092_consen 235 SSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLG 314 (433)
T ss_pred CCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeC
Confidence 001 01 1112222 2222222 33334444444444444445555666666555554443321111 10
Q ss_pred -ChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 475 -DLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 475 -~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
...+..+.-.++..+.....+-.....++|+.|+..-|+.+++...+.++|..++..+...
T Consensus 315 i~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~ 376 (433)
T PF03092_consen 315 IPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAF 376 (433)
T ss_pred cCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112233344555566666677778889999999999999999999999999888887765
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.8e-09 Score=117.18 Aligned_cols=307 Identities=16% Similarity=0.180 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHh--hhhhhHHHHHHHHhhhcCCC
Q psy2962 194 FLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGA--STSGVFLVAYVLALEMVGPS 271 (690)
Q Consensus 194 ~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~--~~g~~~~~~~~~i~e~~~~~ 271 (690)
...+..++.++..|.++||+|||..+.+.++...+..+...+.. +|.++ +.|+ +.+.......++++|....+
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~ 144 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEE 144 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchh
Confidence 45667778899999999999999999999999999888887766 33333 4444 24455677888999999999
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHhhh---chHHHHHHHHHHHHHHH-HHHHhcCchhHHHhcCCHHHHHHHHHHHHH
Q psy2962 272 KRIIAGTVIHMFFSIGFLLIAGLAYFVHD---WRHLDILVTLPGLIYLA-YWWFIPESARWLISKGRNEEAKLIIQAVAE 347 (690)
Q Consensus 272 ~R~~~~~~~~~~~~lG~~l~~~l~~~l~~---Wr~~~~i~~i~~ll~~~-~~~~lpesp~~l~~~~~~~ea~~~l~~~~~ 347 (690)
+|....++....+..|..++|.++..+.. .-..+.+..+..++..+ ...++||+-. +++.++
T Consensus 145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~----~~~~~~---------- 210 (463)
T KOG2816|consen 145 ERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQ----EKERSD---------- 210 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccC----cccccc----------
Confidence 99999999999999999999999998853 44566666666666554 4456788742 000000
Q ss_pred HcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHHHH-H-HhhccCCCCch--
Q psy2962 348 ENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYY-G-LSWNTANLGGN-- 423 (690)
Q Consensus 348 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~-~-~~~~~~~l~~~-- 423 (690)
....+...+ .................-.+|......+...+........+- . +.+....++.+
T Consensus 211 --------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~ 277 (463)
T KOG2816|consen 211 --------ATLRELTPG-----SLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKK 277 (463)
T ss_pred --------ccccccCCC-----cccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHH
Confidence 000000000 000000000000111111111111111111111111110000 0 11122333432
Q ss_pred -HHHHHHHHHHHHHHHHHHHH-HHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 424 -IYLNFIISGMVEIPAYLSSM-LTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIF 501 (690)
Q Consensus 424 -~~~~~~~~~l~~i~~~~~~~-~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 501 (690)
........+..+.++.++.. .+...+|-|+....++....+..+.+++.... |.... ..+.........+...++
T Consensus 278 ~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~--w~~~~-~~v~~~~~~~~~pa~~s~ 354 (463)
T KOG2816|consen 278 EFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATET--WMMFA-AGVVVALAGIVFPAIRAF 354 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccc--hhhhH-HHHHHHhhcchhHHHHhH
Confidence 22344455666677776666 66777888888888888888888888887553 33322 233335556667788888
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 502 SAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 502 ~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
++....++.+|.++++...+..+.++++|.+.+.
T Consensus 355 ~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~ 388 (463)
T KOG2816|consen 355 ASILVSPEEQGKVFGIISGIEGLSGVVSPALYGN 388 (463)
T ss_pred HHhhcccccccchhhHHHHHHHHhhhhhHHHHHH
Confidence 8889999999999999999999999999998774
|
|
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.3e-10 Score=125.12 Aligned_cols=337 Identities=14% Similarity=0.137 Sum_probs=225.4
Q ss_pred ceeeeCCccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhcc--------------------c
Q psy2962 178 WSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFA--------------------P 237 (690)
Q Consensus 178 ~~LvC~~~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s--------------------~ 237 (690)
|++. +.+.|++.+.+=+|..+...+..+..-|.-|-+.+-++.++.+++++++++- +
T Consensus 127 F~i~---Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~ 203 (735)
T KOG3626|consen 127 FKIS---SSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENP 203 (735)
T ss_pred cCCC---CCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCC
Confidence 5554 6789999999999999999999999999999999999999999999988761 1
Q ss_pred ---------------------------c----HH-HHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCcchhhhhHHHHHHH
Q psy2962 238 ---------------------------D----FW-TFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFS 285 (690)
Q Consensus 238 ---------------------------s----~~-~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~ 285 (690)
. ++ .++++.++.|+|....++....|+-|.+.+++-....+++.....
T Consensus 204 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~ 283 (735)
T KOG3626|consen 204 SSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAI 283 (735)
T ss_pred ccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHH
Confidence 0 22 577889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh----------------------hchHHHHHHHHHHHHHHHHHHHhcCchhHHHhcCCHHHHHHHHH
Q psy2962 286 IGFLLIAGLAYFVH----------------------DWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQ 343 (690)
Q Consensus 286 lG~~l~~~l~~~l~----------------------~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~~~~ea~~~l~ 343 (690)
+|.++|.+++.+.. -|..-|++.+.+.++..+.++++|...+ ..++..++++ ++
T Consensus 284 lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp---~~~~~~~~~~-~~ 359 (735)
T KOG3626|consen 284 LGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELP---KSQKRKRARD-LH 359 (735)
T ss_pred hhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCc---cccccchhhh-hc
Confidence 99999999998862 1555666777777777777788875532 1111100000 00
Q ss_pred HHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCCc
Q psy2962 344 AVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWF-VCSLTYYGLSWNTANLGG 422 (690)
Q Consensus 344 ~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~ 422 (690)
. ...+.+ .... . ......-+.-...++.+++||.+...++...+-.. ...+..|.+-+....++.
T Consensus 360 ~------~k~~~~---~~~~----~-~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~ 425 (735)
T KOG3626|consen 360 V------LKTESG---GAKS----D-KTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGI 425 (735)
T ss_pred c------cccccc---cccC----C-cchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCC
Confidence 0 000000 0000 0 00000011123456788999987766666554433 445555666677788888
Q ss_pred hHHHHHHHHHHHHH----HHHHHHHHHHhhcCC--hhHHHHHHHHHHHHHHH---HHhc---------------------
Q psy2962 423 NIYLNFIISGMVEI----PAYLSSMLTLDRYGR--KNFLCPCLILSGLCLIV---SALL--------------------- 472 (690)
Q Consensus 423 ~~~~~~~~~~l~~i----~~~~~~~~l~dr~gr--r~~l~~~~~~~~i~~l~---~~~~--------------------- 472 (690)
+.+....+.+...+ +|.+++|+++.|+.- |......++...+..+. ..++
T Consensus 426 sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~ 505 (735)
T KOG3626|consen 426 SASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFT 505 (735)
T ss_pred CHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHHHHHHHEecCCCCcccceecCCCCCCccc
Confidence 87777777766554 566778888888753 44433333333332222 2222
Q ss_pred C-C--------------C----------------------------------------h---------------------
Q psy2962 473 P-L--------------D----------------------------------------L--------------------- 476 (690)
Q Consensus 473 ~-~--------------~----------------------------------------~--------------------- 476 (690)
. . . .
T Consensus 506 ~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChAGC~~~~~~~~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~ 585 (735)
T KOG3626|consen 506 SHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHAGCTESSGTSDGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQ 585 (735)
T ss_pred cCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhhCCcccccCCCCceeeccccccccccCCCceeecCCCCCCcchh
Confidence 0 0 0 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy2962 477 NTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFAR-VGGIFASYTSVL 535 (690)
Q Consensus 477 ~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~-lg~~i~p~i~~~ 535 (690)
....++..++..+..+......+..+...+|++.|..++|+..++.+ +|.+-+|.+.|+
T Consensus 586 ~~~Fl~~~~~~sf~~~~~~~p~~~i~LR~V~~e~ks~AlG~~~~~irllg~IPsPIifG~ 645 (735)
T KOG3626|consen 586 FLIFLALFAIGSFIGALGAVPGMLIVLRCVPPEEKSFALGFQWMLIRLLGFIPSPIIFGA 645 (735)
T ss_pred hHHHHHHHHHHHHHHHhccCcceEEEEEccCchhchhhhHHHHHHHHHHhcCCchHhhhh
Confidence 01233334445555555556777788889999999999999988877 677779999987
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.7e-10 Score=119.44 Aligned_cols=142 Identities=22% Similarity=0.242 Sum_probs=115.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCC-cHHHHHHHHHHHHHHhhh-hc---cc-cHHHHHHHHHHHHhhhhhhHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGR-KPTFMISILIMDVFGTLA-AF---AP-DFWTFTACRLIVGASTSGVFL 258 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Gr-r~~ll~~~~l~~i~~~~~-~~---s~-s~~~l~~~R~l~G~~~g~~~~ 258 (690)
....|++.++..+|.+++++.+|+++.|.|. |+-++.|.++.+++.++. +. .+ ..+.++++|++.|+|.+.. .
T Consensus 70 ~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a 148 (488)
T KOG2325|consen 70 ATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-A 148 (488)
T ss_pred cchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-H
Confidence 5678999999999999999999999999996 777889999999998887 33 23 6788999999999987765 6
Q ss_pred HHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh-----h-----------chHHHHHHHHHHHHHHH-HHHH
Q psy2962 259 VAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH-----D-----------WRHLDILVTLPGLIYLA-YWWF 321 (690)
Q Consensus 259 ~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~-----~-----------Wr~~~~i~~i~~ll~~~-~~~~ 321 (690)
..-.|+++-...++|.++++....+..+|.++||.++..+. | +..+-|+.++..++.++ +.++
T Consensus 149 ~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~ 228 (488)
T KOG2325|consen 149 VLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFF 228 (488)
T ss_pred HHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhh
Confidence 78899999999999999999999999999999998887763 2 23455666666666543 4445
Q ss_pred hcCchh
Q psy2962 322 IPESAR 327 (690)
Q Consensus 322 lpesp~ 327 (690)
+.|.+|
T Consensus 229 f~E~~~ 234 (488)
T KOG2325|consen 229 FKEVYR 234 (488)
T ss_pred eeeccc
Confidence 666553
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.7e-09 Score=118.35 Aligned_cols=140 Identities=13% Similarity=0.072 Sum_probs=120.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
..+.|++.++..++..++.+++|+++||+|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+....++
T Consensus 261 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 340 (420)
T PRK09528 261 TRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYI 340 (420)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999988999999999999999999999988888888999
Q ss_pred hhhcCCCcchhhhhH-HHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHH-HHHhcC
Q psy2962 265 LEMVGPSKRIIAGTV-IHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAY-WWFIPE 324 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~-~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~-~~~lpe 324 (690)
.|.+|++.|+...+. ++.+..+|.++++.+++++. ||+..|.+.++..++..+. .+.+++
T Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 341 TLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999887655 67788899999999888874 7999999888877665543 334443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.9e-09 Score=117.70 Aligned_cols=141 Identities=16% Similarity=0.101 Sum_probs=119.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccc----cHHHHHHHHHHHHhhhhhhHHHHH
Q psy2962 186 WYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAP----DFWTFTACRLIVGASTSGVFLVAY 261 (690)
Q Consensus 186 ~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~----s~~~l~~~R~l~G~~~g~~~~~~~ 261 (690)
...+...++..++..++.++.|+++||+|||++++++.++.+++..+..... +++.+++.+++.|++.+...+...
T Consensus 251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~ 330 (418)
T TIGR00889 251 KNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGS 330 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999999988876666532 246677889999999999999999
Q ss_pred HHHhhhcCCCcchhhhhHHH-HHHHHHHHHHHHHHHHhh---------hchHHHHHHHHHHHHHH-HHHHHhcCch
Q psy2962 262 VLALEMVGPSKRIIAGTVIH-MFFSIGFLLIAGLAYFVH---------DWRHLDILVTLPGLIYL-AYWWFIPESA 326 (690)
Q Consensus 262 ~~i~e~~~~~~R~~~~~~~~-~~~~lG~~l~~~l~~~l~---------~Wr~~~~i~~i~~ll~~-~~~~~lpesp 326 (690)
.++.|++|+++|+++.++.+ ..+++|.+++|.+++.+. +|+.+|.+.++..++.. +..++++|+.
T Consensus 331 ~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 331 VFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 99999999999999999997 678999999999998762 48999998887766654 4455567763
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.5e-09 Score=114.70 Aligned_cols=139 Identities=12% Similarity=0.032 Sum_probs=115.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
..+.+++.+...++.+++.++.|+++||+|||+.+..+.+...+......++++.+.+++.+++.+++.+...+....+.
T Consensus 251 ~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~g~~~~~~~~~~ 330 (393)
T PRK15011 251 EKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIYIGILGGIGMLYF 330 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678887887788888999999999999999988877766666555555677888888999999998888878888888
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHHhcC
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAYWWFIPE 324 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~~~~lpe 324 (690)
.|..|+ +|++++++++....+|..+++.+++.+. +|+..+++.++..++.++..+++||
T Consensus 331 ~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 331 QDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 998875 6999999999999999999999998874 6898998888888777777776664
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=3e-09 Score=115.44 Aligned_cols=137 Identities=22% Similarity=0.275 Sum_probs=119.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHHhhh
Q psy2962 188 RGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLALEM 267 (690)
Q Consensus 188 ~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i~e~ 267 (690)
.++..+.+.++..++.++.|++.||+|||+.+..+.++.+++.++..+.++.+.+++.+++.|++.+..++.....+.|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~ 330 (399)
T PRK05122 251 AALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVKR 330 (399)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 46667788899999999999999999999999999998888888888888988889999999999999998888888999
Q ss_pred cCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHHhcC
Q psy2962 268 VGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAYWWFIPE 324 (690)
Q Consensus 268 ~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~~~~lpe 324 (690)
+|+++|+++.++++....+|..+++.+.+.+. +|++.+++.++..++.++..+++++
T Consensus 331 ~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 390 (399)
T PRK05122 331 VPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR 390 (399)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999988887777663 6899999888877776666555544
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.9e-08 Score=104.57 Aligned_cols=322 Identities=13% Similarity=0.036 Sum_probs=188.2
Q ss_pred HHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCcch
Q psy2962 195 LMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRI 274 (690)
Q Consensus 195 ~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~ 274 (690)
..-.++...++...+.|..|.|++++++.+...+..++..+.++...+-+..++.|++.+. .++-++++--.+++++--
T Consensus 50 ~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq 128 (412)
T PF01770_consen 50 WTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQ 128 (412)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHH
Confidence 3344556678889999999999999999999999999999999999999999999998777 578889999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhh-----hchHHHHHHHHHHHHHHHHHHHhcCchhHHHhcCCHHHHHHHHHHHHHHc
Q psy2962 275 IAGTVIHMFFSIGFLLIAGLAYFVH-----DWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEEN 349 (690)
Q Consensus 275 ~~~~~~~~~~~lG~~l~~~l~~~l~-----~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~~~~ea~~~l~~~~~~n 349 (690)
++.+...++.-+|..++.++|-.+. +.+.+..+......+.++..+++|..++-+.-+.+..+... .+
T Consensus 129 ~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~-------~~ 201 (412)
T PF01770_consen 129 KVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPKRSLFFHRKPPAEQD-------AN 201 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCcccceeccCccccc-------cc
Confidence 9999999999999999888888773 35556666655555556666778876653333322221111 00
Q ss_pred CCcchhhhhhcccCCCchHHHHhhhhc-------CCCCccchhhccCcHHHHHHHHHHHHHHHH-HHHHHHHhhccCC--
Q psy2962 350 KVILEGFVLDGLLAPSPEEEEKLKAQN-------DGPKPSIFELFRHPNLFKKSVIIFFLWFVC-SLTYYGLSWNTAN-- 419 (690)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~-- 419 (690)
+. +.+..++..+...+..+.....+ ..-...+++..++|.+++-.+-..+..... ...+|...++...
T Consensus 202 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~ 279 (412)
T PF01770_consen 202 ES--ESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVPP 279 (412)
T ss_pred cc--cccccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCC
Confidence 00 00000000000000000000000 001123445556776554433322222222 2223333332221
Q ss_pred CCchHHHHH---HHHHHHHHHHHHHHHHHHhhcCChhHHH--HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Q psy2962 420 LGGNIYLNF---IISGMVEIPAYLSSMLTLDRYGRKNFLC--PCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGA 494 (690)
Q Consensus 420 l~~~~~~~~---~~~~l~~i~~~~~~~~l~dr~grr~~l~--~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 494 (690)
-......++ .+..+.+.++.+..|++-.++.+..-+. ...++.+.+++++.. .++.|...+..++.+..+...
T Consensus 280 ~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~--t~~Iwv~Y~~yIif~~~y~fl 357 (412)
T PF01770_consen 280 SDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSF--TGNIWVCYAGYIIFRSLYMFL 357 (412)
T ss_pred CCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHH
Confidence 111122222 3334444556666677644444433222 223333333333333 344677777777777777777
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHH
Q psy2962 495 YGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIF 528 (690)
Q Consensus 495 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i 528 (690)
.++...-++.....+.-|..+|+..+++.+-..+
T Consensus 358 iTiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQti 391 (412)
T PF01770_consen 358 ITIASFQIAKNLSEERYALVFGINTFVALVLQTI 391 (412)
T ss_pred HHHHHHHHHHhccccceeeeeeeHHHHHHHHHHh
Confidence 7777766766666666778888777766655443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.1e-08 Score=110.20 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2962 424 IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSA 503 (690)
Q Consensus 424 ~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 503 (690)
.........+..+++.++.|++.||+|||+.+..+.++.+++.++..+.+ +.+..++..++.+++.+...+....++.
T Consensus 31 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 108 (399)
T TIGR00893 31 YGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG--AYVSLYILRVLLGAAEAPFFPGIILIVA 108 (399)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc--CHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 44556667788889999999999999999999999888888887777765 3555666667777888888889999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 504 EQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 504 e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
|.+|++.|+.+.|+.+....+|.+++|.+.+.
T Consensus 109 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 140 (399)
T TIGR00893 109 SWFPASERATAVSIFNSAQGLGGIIGGPLVGW 140 (399)
T ss_pred HhCCHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 99999999999999999999999999999875
|
|
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.8e-08 Score=105.36 Aligned_cols=302 Identities=15% Similarity=0.140 Sum_probs=190.1
Q ss_pred HHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHHhhhcCCC
Q psy2962 192 DAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLALEMVGPS 271 (690)
Q Consensus 192 ~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~ 271 (690)
+++-.....+++++.+.+.|+.|.|+.+.++........+..-+ +|-+.++++-.+.|+|.+..+...-.++.|...++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~~ 134 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE 134 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence 77888888999999999999999999999999888887766655 45677888999999999999999999999999999
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHhhh-----------c-hHHH----------HHHHHH---HHHHHHHHHHhcCch
Q psy2962 272 KRIIAGTVIHMFFSIGFLLIAGLAYFVHD-----------W-RHLD----------ILVTLP---GLIYLAYWWFIPESA 326 (690)
Q Consensus 272 ~R~~~~~~~~~~~~lG~~l~~~l~~~l~~-----------W-r~~~----------~i~~i~---~ll~~~~~~~lpesp 326 (690)
.+.+..++.......+.++|..+...+.. - |..+ .+.+++ ..+.++...++|.+
T Consensus 135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~- 213 (461)
T KOG3098|consen 135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSK- 213 (461)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCcc-
Confidence 99999999888888888888776665521 1 1111 011111 00011111111110
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhh-hcCCCCccchhhccCcHHHHHHHHHHHHHHH
Q psy2962 327 RWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKA-QNDGPKPSIFELFRHPNLFKKSVIIFFLWFV 405 (690)
Q Consensus 327 ~~l~~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~ 405 (690)
.. ..+ .+..+ ...+......++++++++.......+..++.
T Consensus 214 ~~------~~~--------------------------------~~~~~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~ 255 (461)
T KOG3098|consen 214 DV------VNC--------------------------------KSSSETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLE 255 (461)
T ss_pred ch------hhh--------------------------------hhhccccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHH
Confidence 00 000 00000 0000011234556666655544444333332
Q ss_pred HHHH--HHHHhhc-cCCCCch----HHHHHHHHHHHHHHHHHHHHHHHhh---cCChhHHHHHHHHHHHHHHHHHhc-CC
Q psy2962 406 CSLT--YYGLSWN-TANLGGN----IYLNFIISGMVEIPAYLSSMLTLDR---YGRKNFLCPCLILSGLCLIVSALL-PL 474 (690)
Q Consensus 406 ~~~~--~~~~~~~-~~~l~~~----~~~~~~~~~l~~i~~~~~~~~l~dr---~grr~~l~~~~~~~~i~~l~~~~~-~~ 474 (690)
.+.. .|...+. ....+.+ .....+..+++++.+....+.+.+| +||+..+.++..+..+.+++.... |.
T Consensus 256 ~Sf~~~iypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~ 335 (461)
T KOG3098|consen 256 TSFWISIYPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPN 335 (461)
T ss_pred HHHHHhccchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccc
Confidence 2111 1111111 1122222 2344556677778877777777654 678888877777776666655443 22
Q ss_pred Ch---------------hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 475 DL---------------NTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSV 534 (690)
Q Consensus 475 ~~---------------~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~ 534 (690)
+. ..+..++..+.+++-.......+.++..++| +.|..+.++.-.-..+++.++-+...
T Consensus 336 dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~ 409 (461)
T KOG3098|consen 336 DAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSP 409 (461)
T ss_pred cCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhh
Confidence 21 2356666777888888888999999999995 55888888888888877776655543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.1e-09 Score=114.65 Aligned_cols=139 Identities=17% Similarity=0.026 Sum_probs=116.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
..+.+++.+.+.++.+++.++.|+++||+|||+.+..+.+...++.++..+.++.+.+.+.-++.|++.++..+...+++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 333 (406)
T PRK11551 254 RSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAAGLFVVGGQSVLYALA 333 (406)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45778899999999999999999999999999999888777777777777788888888888999998888889999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh----hchHHHHHHHHHHHHHHHHHHHhc
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH----DWRHLDILVTLPGLIYLAYWWFIP 323 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~----~Wr~~~~i~~i~~ll~~~~~~~lp 323 (690)
.|.+|+++|+++.++.+....+|.+++|.+++.+. +|...+++.....++..+..+++.
T Consensus 334 ~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (406)
T PRK11551 334 PLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLV 396 (406)
T ss_pred HHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998873 455666666555555555444443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.6e-09 Score=112.93 Aligned_cols=137 Identities=25% Similarity=0.288 Sum_probs=127.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcH-HHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKP-TFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVL 263 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~-~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~ 263 (690)
+.+.++..+...++..++.++.|++.||+|||+ .+..+.++..++.++..+.++.+.+.+..++.|++.+...+....+
T Consensus 210 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 289 (352)
T cd06174 210 AAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTL 289 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhccchhHHHH
Confidence 577899999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHH
Q psy2962 264 ALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAYWWF 321 (690)
Q Consensus 264 i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~~~~ 321 (690)
+.|..|+++|++.+++.+....+|..+++.+.+.+. +|+..+++.++..++..+..++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 290 ASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred HHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence 999999999999999999999999999999998874 7999999998888777665443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.4e-09 Score=118.26 Aligned_cols=133 Identities=12% Similarity=0.071 Sum_probs=109.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcccc--CCcHHHHH--HHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRF--GRKPTFMI--SILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVA 260 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~--Grr~~ll~--~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~ 260 (690)
..+.+++.++..++.+++.++.|+++||. ++|+...+ +.++.+++.++..++++++.+++.+++.|++.+...+..
T Consensus 275 ~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~~~G~~~g~~~~~~ 354 (455)
T TIGR00892 275 EYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGLSFGSVGALL 354 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhchHHHHH
Confidence 46788999999999999999999999984 33433333 344445555566778899999999999999999999999
Q ss_pred HHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh----hchHHHHHHHHHHHHHHH
Q psy2962 261 YVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH----DWRHLDILVTLPGLIYLA 317 (690)
Q Consensus 261 ~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~----~Wr~~~~i~~i~~ll~~~ 317 (690)
..++.|.+|++++++..++++....+|.+++|.+++.+. +|++.|++.++..++..+
T Consensus 355 ~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 355 FEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 999999999999999999999999999999999998763 589999988877655443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.4e-08 Score=107.05 Aligned_cols=142 Identities=10% Similarity=0.021 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhccCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q psy2962 392 LFKKSVIIFFLWFVCSLTYY-GLSWNTANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLI 467 (690)
Q Consensus 392 ~~~~~l~~~~~~~~~~~~~~-~~~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l 467 (690)
++...+..++.++.....+. ...+..+.++.+ .........+..+++.++.|+++||+|||+.+..+.++.+++++
T Consensus 9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~ 88 (395)
T PRK10054 9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFI 88 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHH
Confidence 44444445555555444433 333444556644 34444555667788899999999999999999988888888777
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 468 VSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
.+.+.++ .+..++...+.+.+.+...+....+..|.+|++.|+++.|+.+....+|.+++|.+.++
T Consensus 89 ~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~ 154 (395)
T PRK10054 89 AIPLVNN--VTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTL 154 (395)
T ss_pred HHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766543 33333333444455555667788889999999999999999999999999999999887
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.2e-08 Score=104.95 Aligned_cols=119 Identities=19% Similarity=0.104 Sum_probs=96.8
Q ss_pred hccCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q psy2962 415 WNTANLGG---NIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFI 491 (690)
Q Consensus 415 ~~~~~l~~---~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~ 491 (690)
...++++. ...+......+...++.++.|+++||+|||+.+..+.++.+++.++..+.+ + .+..++..++.+++.
T Consensus 22 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~g~~~ 99 (352)
T PF07690_consen 22 YLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFAS-N-FWLLLIARFLLGIGS 99 (352)
T ss_dssp HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHC-C-HHHHHHHHHHHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhh-h-HHHHhhhcccccccc
Confidence 44455553 345566667778889999999999999999999999999888855555432 2 446666777888888
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 492 TGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 492 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+...+....++.|.+|++.|+.++|+.+....+|.+++|.+.+.
T Consensus 100 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~ 143 (352)
T PF07690_consen 100 GFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGF 143 (352)
T ss_dssp HHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccchhhhhhhccccccchhhhhhhcccchhhh
Confidence 89999999999999999999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.1e-09 Score=112.84 Aligned_cols=131 Identities=17% Similarity=0.079 Sum_probs=113.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccH--HHHHHHHHHHHhhhhhhHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDF--WTFTACRLIVGASTSGVFLVAYV 262 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~--~~l~~~R~l~G~~~g~~~~~~~~ 262 (690)
..+.+++.+++.++..++.++.|+++||+|||+.+.++.++.+++.++..+.++. ..+++..++.|++.+...+....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~ 318 (377)
T TIGR00890 239 DGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFFTWGGTISLFPS 318 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHHHhccchhccHH
Confidence 4567888999999999999999999999999999999999998888887776643 33556778889988888888888
Q ss_pred HHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHH
Q psy2962 263 LALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIY 315 (690)
Q Consensus 263 ~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~ 315 (690)
++.|.+|+++|+++.++.+....+|..++|.+++.+. +|++.|.+.++..++.
T Consensus 319 ~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 319 LVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999988763 6999998887766554
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.3e-09 Score=112.67 Aligned_cols=135 Identities=14% Similarity=0.164 Sum_probs=118.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHHhh
Q psy2962 187 YRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLALE 266 (690)
Q Consensus 187 ~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i~e 266 (690)
..+++.+++.++.+++.++.|+++||+|||+.+..+.++..++.+...+.++.+.+++.+++.|++.+...+....++.+
T Consensus 259 ~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 338 (408)
T PRK09874 259 ISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVY 338 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHH
Confidence 35666777788888999999999999999999999998888888888888889999999999999999999999999999
Q ss_pred hcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHH
Q psy2962 267 MVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAYWWF 321 (690)
Q Consensus 267 ~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~~~~ 321 (690)
..++++|++..++......+|.+++|.+++.+. +|++.|++.++..++..+..++
T Consensus 339 ~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 339 NSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred hCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998873 6999999988887776554443
|
|
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=98.97 E-value=8.4e-08 Score=101.92 Aligned_cols=149 Identities=15% Similarity=0.167 Sum_probs=117.0
Q ss_pred hhccCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchH---HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHH
Q psy2962 385 ELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNTANLGGNI---YLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLIL 461 (690)
Q Consensus 385 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~ 461 (690)
+++.++.....++...+..+...++++.+.+..++.++.. +....+.-..+++..++.+++++|+|+-+++..++.+
T Consensus 366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~ 445 (618)
T KOG3762|consen 366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLAC 445 (618)
T ss_pred HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhH
Confidence 4566666666566666666667777777777777766432 2344455577899999999999999999999999998
Q ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy2962 462 SGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFA-RVGGIFASYTSVL 535 (690)
Q Consensus 462 ~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~-~lg~~i~p~i~~~ 535 (690)
.++-++.+....+ +|..+.+-++-++..+..+..+.+|++...|++.|+++.|+..... .+|-.+|.+++|.
T Consensus 446 ~~~Rf~~~S~L~n--~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~ 518 (618)
T KOG3762|consen 446 NVGRFLYYSYLQN--PWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGF 518 (618)
T ss_pred HHHHHHHHHHhcC--chheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhh
Confidence 8888888877754 7777777888889999999999999999999999999999987665 4777777777775
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.7e-09 Score=111.98 Aligned_cols=133 Identities=21% Similarity=0.192 Sum_probs=117.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHHhhh
Q psy2962 188 RGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLALEM 267 (690)
Q Consensus 188 ~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i~e~ 267 (690)
.++..+.+.++.++++++.|++.||+|||+.+..+..+.+++.++..+.++.+.+++++++.|++.+...+...+.+.|.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~ 330 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVKR 330 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 45667778888899999999999999999999999999999888888888988888999999999999888888899999
Q ss_pred cCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHH
Q psy2962 268 VGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAYWW 320 (690)
Q Consensus 268 ~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~~~ 320 (690)
+++++|+++.++.+....+|..++|.+++.+. +|+..|.+.++..++..+..+
T Consensus 331 ~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 331 VPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888874 699999998887776655443
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.4e-08 Score=105.50 Aligned_cols=118 Identities=13% Similarity=0.075 Sum_probs=95.3
Q ss_pred ccCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Q psy2962 416 NTANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFIT 492 (690)
Q Consensus 416 ~~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 492 (690)
..++++.+ ..+......+...++.++.|++.||+|||+.+..++++.+++.++..+.++ .+..++.-++.+++.+
T Consensus 34 l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l~G~~~~ 111 (412)
T TIGR02332 34 MGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATG--PESLYLLRILVGIAEA 111 (412)
T ss_pred hHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHh
Confidence 34555533 344455556677888899999999999999999999999988888877544 4445555667778888
Q ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 493 GAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 493 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
...+....++.|.+|++.|+.++|+.+....+|.+++|.+.++
T Consensus 112 ~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~ 154 (412)
T TIGR02332 112 GFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGY 154 (412)
T ss_pred hHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999999999999999999999999876
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.5e-09 Score=110.93 Aligned_cols=121 Identities=17% Similarity=0.126 Sum_probs=95.5
Q ss_pred HhhccCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q psy2962 413 LSWNTANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKF 489 (690)
Q Consensus 413 ~~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~ 489 (690)
.+...+.++.+ .........+..+++.++.+++.||+|||+.+..+.++.+++.++..+.++ .+..++..++.++
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~ 117 (398)
T TIGR00895 40 APAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATN--VTQLLILRFLAGL 117 (398)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHhc
Confidence 33444555533 334455566777889999999999999999999998888887777666543 4445555666777
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 490 FITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 490 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+.+...+....+..|.+|++.|+.+.|+......+|.+++|.+.+.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 163 (398)
T TIGR00895 118 GLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGW 163 (398)
T ss_pred ccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHH
Confidence 7788888999999999999999999999999999999999999876
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.1e-08 Score=105.52 Aligned_cols=137 Identities=12% Similarity=-0.030 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcC--
Q psy2962 399 IFFLWFVCSLTYYGLSWNTANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLP-- 473 (690)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~-- 473 (690)
.++..+........++.+..+.+.+ .........+..+++.++.|++.||+|||+.+..+.++.+++.++..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 87 (365)
T TIGR00900 8 QLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL 87 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3333444444444444444444433 34455556677788899999999999999999998888777766665543
Q ss_pred -CChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 474 -LDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 474 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
..+.+..++..++.+++.+...+...++..|.+|++.|+.+.|+.+....+|.+++|.+.+.
T Consensus 88 ~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~ 150 (365)
T TIGR00900 88 GGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGL 150 (365)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 11355556666677788888888999999999999999999999999999999999999876
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.3e-08 Score=111.18 Aligned_cols=152 Identities=18% Similarity=0.135 Sum_probs=107.0
Q ss_pred hhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHH
Q psy2962 384 FELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNTANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLI 460 (690)
Q Consensus 384 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~ 460 (690)
+.+.|++.++...+..++..+...+.....+....+++.+ .........+..+++.++.|++.||+|||+.+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~ 90 (417)
T PRK10489 11 SLLKTHPAFRAVFIARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARG 90 (417)
T ss_pred HHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHH
Confidence 3444567777666665565555555544444444444433 3455556667778899999999999999999888777
Q ss_pred HHHHHHHHHHh---cCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 461 LSGLCLIVSAL---LPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 461 ~~~i~~l~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+.+++.+.+.. ......+...+..++.+++.+...+....+..|.+|++.|+++.++.+....+|.+++|.+.+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~ 168 (417)
T PRK10489 91 TCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGL 168 (417)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHH
Confidence 76666554432 2223344444555555666666777788899999999999999999999999999999999876
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.6e-08 Score=106.77 Aligned_cols=141 Identities=9% Similarity=-0.120 Sum_probs=101.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q psy2962 390 PNLFKKSVIIFFLWFVCSLTYYGLSWNTANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCL 466 (690)
Q Consensus 390 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~ 466 (690)
|+++...+..++..+..............+++.+ ..+......+...+..++.|++.||+|||+++..+.++.+++.
T Consensus 3 ~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~ 82 (393)
T PRK11195 3 KGFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGC 82 (393)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHH
Confidence 3455444444444443333333333333444432 3444455667778889999999999999999999998887777
Q ss_pred HHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 467 IVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 467 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+.+.+..+ . ++..++.+++.+...+...+++.|.+|++.|+++.|+.+....+|.+++|.+.++
T Consensus 83 ~~~~~~~~--~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~ 146 (393)
T PRK11195 83 LLMLFGIH--P---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGA 146 (393)
T ss_pred HHHHHHHH--H---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554322 1 3344566788888889999999999999999999999999999999999999987
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.1e-08 Score=103.99 Aligned_cols=120 Identities=14% Similarity=0.090 Sum_probs=92.2
Q ss_pred hhccCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q psy2962 414 SWNTANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFF 490 (690)
Q Consensus 414 ~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~ 490 (690)
+...++++.+ .........+..+++.++.|+++||+|||+.+..+.++.+++.++....++ .+..++..++.+++
T Consensus 27 p~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~--~~~~~~~~~l~g~~ 104 (392)
T PRK10473 27 PRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAET--SSLFLAGRFLQGIG 104 (392)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHhh
Confidence 3334445533 334445556677888999999999999999999998888888877766543 33444445556677
Q ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 491 ITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 491 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
.+...+..+.+..|.+|++.|+++.|+.+....+|.+++|.+.+.
T Consensus 105 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~ 149 (392)
T PRK10473 105 AGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHL 149 (392)
T ss_pred hhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777778889999999999999999999999999999999988775
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.9e-08 Score=105.13 Aligned_cols=117 Identities=15% Similarity=0.053 Sum_probs=94.9
Q ss_pred cCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Q psy2962 417 TANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITG 493 (690)
Q Consensus 417 ~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 493 (690)
.++++.+ .........+..+++.++.|++.||+|||+.+..+.++.+++.+.....++ .+...+..++.+++.+.
T Consensus 32 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~g~~~~~ 109 (385)
T TIGR00710 32 AADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNN--IETLLVLRFVQAFGASA 109 (385)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHcchhH
Confidence 3445533 445555666778899999999999999999999999888888887766543 44455556677778888
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 494 AYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 494 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
..+....+..|.+|++.|+++.|+.+....+|.+++|.+.+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 151 (385)
T TIGR00710 110 GSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGY 151 (385)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999999999876
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=4e-08 Score=107.93 Aligned_cols=118 Identities=18% Similarity=0.082 Sum_probs=93.3
Q ss_pred ccCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Q psy2962 416 NTANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFIT 492 (690)
Q Consensus 416 ~~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 492 (690)
..+.++.+ .........+...++.++.|++.||+|||+.+.++.++.+++.++..+.++ .+...+..++.+++.+
T Consensus 49 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~l~g~~~g 126 (434)
T PRK11663 49 MLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSS--LWAFALLWVLNAFFQG 126 (434)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHH
Confidence 34445543 344455666778899999999999999999999999998888887766533 3444444455566777
Q ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 493 GAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 493 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
..++....+..|.+|++.|++++|+.+....+|++++|.+.++
T Consensus 127 ~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~ 169 (434)
T PRK11663 127 WGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGA 169 (434)
T ss_pred ccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888999999999999999999999999999999998876
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.7e-08 Score=108.30 Aligned_cols=138 Identities=12% Similarity=0.108 Sum_probs=114.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
+.+.+++.+...+...++.++.|+++||+|||+++.++.++..+..++..+.++.+.+.+.+++.|++.+...+....++
T Consensus 234 ~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~ 313 (375)
T TIGR00899 234 DKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIGILAGIGMLYF 313 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777788889999999999999999888877776666666777888888899999999998888888999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHHhc
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAYWWFIP 323 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~~~~lp 323 (690)
.|..|+ +|+++.++.+....+|..++|.+++.+. +|+..+++.++..++..+...+++
T Consensus 314 ~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 374 (375)
T TIGR00899 314 QDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIK 374 (375)
T ss_pred HHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheec
Confidence 998875 5679999999999999999999988763 689999988888777666655554
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.2e-07 Score=97.42 Aligned_cols=80 Identities=14% Similarity=0.148 Sum_probs=72.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
+.+++.+....+...++..++.|.++||+|||+.-++..++.+++++. -.+++++.++++|++.|++....+.+-.+++
T Consensus 68 ~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~ 146 (354)
T PF05631_consen 68 EHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGRVLGGIATSLLFSAFESWM 146 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999998864 4568999999999999999999999988875
Q ss_pred h
Q psy2962 265 L 265 (690)
Q Consensus 265 ~ 265 (690)
.
T Consensus 147 V 147 (354)
T PF05631_consen 147 V 147 (354)
T ss_pred H
Confidence 3
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.2e-08 Score=107.58 Aligned_cols=111 Identities=16% Similarity=0.059 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCCh----hHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 425 YLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDL----NTVSIVLAMMGKFFITGAYGAVYI 500 (690)
Q Consensus 425 ~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~ 500 (690)
........++.+++.++.+++.||+|||+.+..+.++..++.++..+.++.. .+..++.-++.+++.++.++....
T Consensus 59 ~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~ 138 (502)
T TIGR00887 59 AAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAI 138 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 3455566777889999999999999999999998888888877766654321 234556667778889999999999
Q ss_pred HhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 501 FSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 501 ~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+.+|.+|++.|+.+.++.+....+|.++++.+...
T Consensus 139 ~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~ 173 (502)
T TIGR00887 139 ITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALI 173 (502)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998887654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.2e-08 Score=88.02 Aligned_cols=103 Identities=23% Similarity=0.167 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHH
Q psy2962 431 SGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVI 510 (690)
Q Consensus 431 ~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~ 510 (690)
..+..+++.++.+++.||+|||+.+..+..+..++.+.....+ +.+...+..++.+++.+...+....+..|.+|++.
T Consensus 7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 84 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS--NITVLIIARFLQGFGAAFALVAGAALIADIYPPEE 84 (141)
T ss_pred ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhh
Confidence 4566788899999999999999999988888877777665543 24455556667777888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 511 RNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 511 r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
|+++.|+.+....+|..++|.+.+.
T Consensus 85 ~~~~~~~~~~~~~~g~~~~~~~~~~ 109 (141)
T TIGR00880 85 RGVALGLMSAGIALGPLLGPPLGGV 109 (141)
T ss_pred hhHHHHHHHHhHHHHHHHhHHhHHH
Confidence 9999999999999999999999886
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.3e-08 Score=110.98 Aligned_cols=136 Identities=17% Similarity=0.150 Sum_probs=101.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHh--hhhccccHHHHHHHHHHHHhhhhhhHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGT--LAAFAPDFWTFTACRLIVGASTSGVFLVAYV 262 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~--~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~ 262 (690)
..+.++..+...++..++.+++|+++||+|||+.++....+..++.. +....++.+.+.+.+++.|++..+.......
T Consensus 293 ~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 372 (467)
T PRK09556 293 KEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLLIGV 372 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 45778888999999999999999999999999877665544443332 2234457777778888888755444444456
Q ss_pred HHhhhcCCCcchhhhhHHHHHHHH-HHHHHHHHHHHhhh---------------chHHHHHHHHHHHHHHHHHH
Q psy2962 263 LALEMVGPSKRIIAGTVIHMFFSI-GFLLIAGLAYFVHD---------------WRHLDILVTLPGLIYLAYWW 320 (690)
Q Consensus 263 ~i~e~~~~~~R~~~~~~~~~~~~l-G~~l~~~l~~~l~~---------------Wr~~~~i~~i~~ll~~~~~~ 320 (690)
.+.|.+|++.|+.+.++.+....+ |..++|.+.+.+.+ |+..|++..+..++..+..+
T Consensus 373 ~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 373 AAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred HHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 777999999999999999888886 76777776666543 89999887766666554444
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.1e-07 Score=103.07 Aligned_cols=117 Identities=10% Similarity=0.061 Sum_probs=95.6
Q ss_pred cCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Q psy2962 417 TANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITG 493 (690)
Q Consensus 417 ~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 493 (690)
.+.++.+ .........+...++.++.+.+.||+|||+.+..+.++.+++.++..+.+ +.+..++..++.+++.+.
T Consensus 47 ~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~ 124 (394)
T PRK10213 47 AQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFAN--SFSLLLIGRACLGLALGG 124 (394)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHC--hHHHHHHHHHHHHHhhHH
Confidence 3445533 34444556677788999999999999999999999999988887776653 355566666777788888
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 494 AYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 494 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
..+....++.|.+|++.|+.+.++......+|.+++|.+.+.
T Consensus 125 ~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~ 166 (394)
T PRK10213 125 FWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSF 166 (394)
T ss_pred HHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999999886
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-07 Score=101.94 Aligned_cols=137 Identities=9% Similarity=-0.020 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHHHh-hccCCCCchHHHHHHH---HHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhc
Q psy2962 397 VIIFFLWFVCSLTYYGLS-WNTANLGGNIYLNFII---SGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALL 472 (690)
Q Consensus 397 l~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~---~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~ 472 (690)
...++.++.....+..++ +..+.++.+......+ ..+......++.|+++||+|||+.+..+.++.+++++.+.+.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~ 96 (400)
T PRK11646 17 IDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA 96 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444443333 3445666554444433 345556667889999999999999999999999988887765
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 473 PLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 473 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
++ .+...+..++.+++.+...+...+++.+.+|++.|+++.|+......+|..++|.+.++
T Consensus 97 ~~--~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~ 157 (400)
T PRK11646 97 HE--PWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSW 157 (400)
T ss_pred cc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 42 44455555566666666777788889999999999999999999999999999999887
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.4e-07 Score=102.04 Aligned_cols=118 Identities=14% Similarity=0.016 Sum_probs=92.1
Q ss_pred ccCCCCchHH---HHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Q psy2962 416 NTANLGGNIY---LNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFIT 492 (690)
Q Consensus 416 ~~~~l~~~~~---~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~ 492 (690)
..++++.+.. .......+...++.+..+.+.||+|||+++..+.++.+++++...+.++ .+..++..++.+++.+
T Consensus 35 l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~r~~~G~~~~ 112 (390)
T PRK03545 35 IAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWN--FTVLLISRIGIAFAHA 112 (390)
T ss_pred HHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHH
Confidence 3455554433 3344455566778888999999999999999999998888888777643 4445555555666666
Q ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 493 GAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 493 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
..++....+..|.+|++.|+.++|+......+|..++|.+.+.
T Consensus 113 ~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~ 155 (390)
T PRK03545 113 IFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRV 155 (390)
T ss_pred HHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 6777888899999999999999999999999999999998876
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.4e-07 Score=101.79 Aligned_cols=119 Identities=10% Similarity=-0.034 Sum_probs=95.2
Q ss_pred hccCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHH
Q psy2962 415 WNTANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFI 491 (690)
Q Consensus 415 ~~~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~ 491 (690)
...++++.+ .........+..+++.++.|++.||+|||+++..+..+.+++.++..+.++ .+..++..++.+++.
T Consensus 28 ~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~--~~~l~~~r~l~G~~~ 105 (382)
T PRK10091 28 ELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSS--YLMLAIGRLVSGFPH 105 (382)
T ss_pred HHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHhhh
Confidence 334455533 345556667888899999999999999999999999999988887777643 455555666777777
Q ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 492 TGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 492 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+...+....++.|.+|++.|+.++|+......+|..++|.+.++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~ 149 (382)
T PRK10091 106 GAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTY 149 (382)
T ss_pred HHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHH
Confidence 77777778889999999999999999999999999999988776
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=98.88 E-value=1e-07 Score=106.18 Aligned_cols=125 Identities=9% Similarity=0.039 Sum_probs=100.1
Q ss_pred HHHHHhhccCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHH
Q psy2962 409 TYYGLSWNTANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAM 485 (690)
Q Consensus 409 ~~~~~~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~ 485 (690)
.....+...+.++.+ ..+......+..+++.++.+++.||+|||+.+..+.++.+++.++....++ .+..++..+
T Consensus 21 ~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~ 98 (485)
T TIGR00711 21 VNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPN--LELMIIFRV 98 (485)
T ss_pred HHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCC--HHHHHHHHH
Confidence 333444445555533 445666777888899999999999999999999999988888887766543 445555666
Q ss_pred HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 486 MGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 486 l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+.+++.+...+....++.|.+|++.|+.+.|+......+|..++|.+.++
T Consensus 99 ~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 148 (485)
T TIGR00711 99 IQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGW 148 (485)
T ss_pred HHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhH
Confidence 77788888888999999999999999999999999999999999999886
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.4e-08 Score=106.48 Aligned_cols=134 Identities=20% Similarity=0.251 Sum_probs=109.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
....++..++..++..+++++.|+++||+|||+++..+.++..++.+... ....+...+++.|++.+...+....++
T Consensus 234 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~~p~~~~~~ 310 (381)
T PRK03633 234 DASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML---SQAAMAPALFILGAAGFTLYPVAMAWA 310 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 45678888999999999999999999999999999888888777665443 223445677888988888889999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAYWWF 321 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~~~~ 321 (690)
.|..|+++++...+....++++|.+++|.+++.+. +|++.|.+.++..++..+..+.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 370 (381)
T PRK03633 311 CEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLR 370 (381)
T ss_pred HccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence 99999888888888888899999999999999883 6888999888777665554443
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.7e-08 Score=104.69 Aligned_cols=110 Identities=19% Similarity=0.179 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2962 424 IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSA 503 (690)
Q Consensus 424 ~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 503 (690)
.........+...++.++.|++.||+|||+++..+.++.+++.++..+.++ .+..++..++.+++.+...+....++.
T Consensus 49 ~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~l~G~~~~~~~~~~~~~i~ 126 (405)
T TIGR00891 49 AASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPG--YITMFIARLVIGIGMGGEYGSSAAYVI 126 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 445556667778899999999999999999999998888888877766543 445555667777888888888899999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 504 EQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 504 e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
|.+|++.|+.+.|+.++...+|.+++|.+.+.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 158 (405)
T TIGR00891 127 ESWPKHLRNKASGLLISGYAVGAVVAAQVYSL 158 (405)
T ss_pred HhCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988775
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.8e-08 Score=107.82 Aligned_cols=109 Identities=15% Similarity=-0.002 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2962 424 IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSA 503 (690)
Q Consensus 424 ~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 503 (690)
.........+..+++.++.|+++||+|||+.+..+.++.+++.++..+.++ .+..++..++.+++.+...+....+..
T Consensus 32 ~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~ 109 (379)
T TIGR00881 32 LGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTS--LWVMAALWALNGIFQGMGWPPCGRTVT 109 (379)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHhhccccCCchHHHHH
Confidence 445556667788889999999999999999999999988888888777653 445555666667777778888999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q psy2962 504 EQFPTVIRNIGIGAGSTFARVGGIFASY-TSV 534 (690)
Q Consensus 504 e~~p~~~r~~~~g~~~~~~~lg~~i~p~-i~~ 534 (690)
|.+|++.|+.+.|+.+....+|.+++|. +.+
T Consensus 110 ~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 141 (379)
T TIGR00881 110 KWFSRSERGTWVSFWNCSHNVGGGLLPPLVLF 141 (379)
T ss_pred HhcCHhhheeeEeehhccchhHHHHHHHHHHH
Confidence 9999999999999999999999999994 443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.1e-07 Score=101.72 Aligned_cols=124 Identities=19% Similarity=0.110 Sum_probs=94.3
Q ss_pred HHHHhhccCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHH
Q psy2962 410 YYGLSWNTANLGG---NIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMM 486 (690)
Q Consensus 410 ~~~~~~~~~~l~~---~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l 486 (690)
....+...++++. +..+......+....+.+..|+++||+|||+.+..+.++.+++.++..+.++ .+..++.-.+
T Consensus 26 ~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~--~~~li~~r~l 103 (495)
T PRK14995 26 HVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPT--ASWLIATRAL 103 (495)
T ss_pred HHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHH
Confidence 3334444455553 3344555566677778889999999999999999999999998888877643 4455555566
Q ss_pred HHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 487 GKFFITGAYGAVYIFSAEQF-PTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 487 ~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
.+++.+...+.......+.+ |++.|+.++|+......+|..++|.+.++
T Consensus 104 ~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~ 153 (495)
T PRK14995 104 LAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGI 153 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777776666665654 78899999999999999999999999987
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.6e-08 Score=104.31 Aligned_cols=132 Identities=8% Similarity=-0.044 Sum_probs=115.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
+.+.|++.++..++..++.++.|++.||+|+|+.+.++.++.++..++.+++++.+.+++.+++.|++.+...+....++
T Consensus 239 ~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g~~~~~~~~~~~~~i 318 (382)
T TIGR00902 239 ASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHCGTFAVCHLAAMRYI 318 (382)
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcchhhhhHHH-HHHHHHHHHHHHHHHHhhhc--hHHHHHHHHHHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIH-MFFSIGFLLIAGLAYFVHDW--RHLDILVTLPGLIYLA 317 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~-~~~~lG~~l~~~l~~~l~~W--r~~~~i~~i~~ll~~~ 317 (690)
.+. |+++|++..++++ ...++|.++++.+++.+.++ ...|++.++.+++.++
T Consensus 319 ~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 319 AAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIAAAAFF 373 (382)
T ss_pred HhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 998 9999999999876 57889999999999998543 1346666665554443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.3e-07 Score=101.81 Aligned_cols=123 Identities=13% Similarity=0.030 Sum_probs=95.1
Q ss_pred HHHhhccCCCCchHH---HHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q psy2962 411 YGLSWNTANLGGNIY---LNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMG 487 (690)
Q Consensus 411 ~~~~~~~~~l~~~~~---~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~ 487 (690)
...+...++++.+.. .......+...++.++.|++.||+|||+.+..+.++.+++.+...+.+ +.+..++..++.
T Consensus 31 ~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~ 108 (471)
T PRK10504 31 TALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSG--TLNELLLARVLQ 108 (471)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHH
Confidence 334444455664433 334445566678899999999999999999988888877777665543 244555566777
Q ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 488 KFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 488 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+++.+...+....++.|.+|++.|+++.|+.+....+|..++|.+.+.
T Consensus 109 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~ 156 (471)
T PRK10504 109 GVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGL 156 (471)
T ss_pred HhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 788888888889999999999999999999999999999999999886
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3e-07 Score=96.52 Aligned_cols=171 Identities=17% Similarity=0.083 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh----hccCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q psy2962 392 LFKKSVIIFFLWFVCSLTYYGLS----WNTANLGG---NIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGL 464 (690)
Q Consensus 392 ~~~~~l~~~~~~~~~~~~~~~~~----~~~~~l~~---~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i 464 (690)
.+...+...+..|.....-+.+. ...++++. ..+.....++++..++.++...+.+|+.||++++..+.+..+
T Consensus 11 ~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~ 90 (394)
T COG2814 11 MWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIV 90 (394)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 34444555555554444444332 33445553 356667788888999999999999999999999999999999
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccC
Q psy2962 465 CLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLG 544 (690)
Q Consensus 465 ~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~ 544 (690)
+.++..+.++ .+..++.-++.++..+..+++....+.++.|+++|++++++..+-..++.++|..++.++. +
T Consensus 91 ~n~l~alAp~--f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig------~ 162 (394)
T COG2814 91 SNLLSALAPS--FAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLG------Q 162 (394)
T ss_pred HHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHH------H
Confidence 9999988865 5566677788889999999999999999999999999999999999888888877776521 1
Q ss_pred ccccccccccccchhhccccCCCcchhhccccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHhh-hcc
Q psy2962 545 TSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSL-ILP 615 (690)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~lp 615 (690)
..++..+|+..+++++++.+..+ .+|
T Consensus 163 ---------------------------------------------~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 163 ---------------------------------------------LFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred ---------------------------------------------HhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 55678899999999999988886 788
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.9e-07 Score=100.38 Aligned_cols=141 Identities=15% Similarity=0.060 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2962 426 LNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQ 505 (690)
Q Consensus 426 ~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~ 505 (690)
....+..++..++.++.|+++||+|||+++..+..+.+++.++..+.++ .+..++.-++.+++.+...+..+.+..|.
T Consensus 55 ~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~--~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~ 132 (413)
T PRK15403 55 ASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTS--MTQFLIARFIQGTSICFIATVGYVTVQEA 132 (413)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555677788999999999999999999998888888877766543 44445555555565555556677889999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCccccccccccccchhhccccCCCcchhhccccchhhhhhhh
Q psy2962 506 FPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVILIDQVF 585 (690)
Q Consensus 506 ~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (690)
+|++.|++++++.+....+|..++|.+.+... .
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~------~----------------------------------------- 165 (413)
T PRK15403 133 FGQTKGIKLMAIITSIVLVAPIIGPLSGAALM------H----------------------------------------- 165 (413)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H-----------------------------------------
Confidence 99999999999999999999999999887521 1
Q ss_pred hhhhcccchhhHHHHHHHHHHHHHHhh-hccCCCC
Q psy2962 586 LLQVEIWLPLPFLMFGVLSLTAGILSL-ILPETHH 619 (690)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-~lpet~~ 619 (690)
..+....|++.+++.+++.++.+ .+||+++
T Consensus 166 ----~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 166 ----FVHWKVLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred ----hcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 33556788888888777776554 6788753
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.1e-07 Score=99.93 Aligned_cols=109 Identities=10% Similarity=-0.077 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2962 425 YLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAE 504 (690)
Q Consensus 425 ~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e 504 (690)
........++..++.++.|.+.||+|||+.+..+..+.+++++.....++ .+..++..++.+++.+...+.......|
T Consensus 51 ~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--~~~l~~~~~l~G~~~~~~~~~~~~~i~~ 128 (406)
T PRK15402 51 PTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQS--IEQFTLLRFLQGIGLCFIGAVGYAAIQE 128 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHhHhhhHHHHHHHHHHH
Confidence 34445566777888999999999999999999998888888777766543 4444455555566666667788888999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 505 QFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 505 ~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
.+|++.|..+.++......++..++|.+.+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~ 159 (406)
T PRK15402 129 SFEEADAIKITALMANVALLAPLLGPLVGAA 159 (406)
T ss_pred HhChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888888899999998775
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.4e-07 Score=101.45 Aligned_cols=123 Identities=15% Similarity=0.106 Sum_probs=96.8
Q ss_pred HHHhhccCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q psy2962 411 YGLSWNTANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMG 487 (690)
Q Consensus 411 ~~~~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~ 487 (690)
+......++++.+ .........+..+++.++.|++.||+|||+.+..+.++.+++.+...+.++ .+..++.-++.
T Consensus 39 ~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l~ 116 (426)
T PRK12307 39 YIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASG--VIMLTLSRFIV 116 (426)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHH
Confidence 3333334445533 344555666777889999999999999999999999999888887776543 44555666677
Q ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 488 KFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 488 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+++.+..++....++.|.+|++.|+++.|+......+|.+++|.+.+.
T Consensus 117 G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~ 164 (426)
T PRK12307 117 GMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPS 164 (426)
T ss_pred HHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHH
Confidence 788888888899999999999999999999999999999999888765
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.7e-07 Score=101.42 Aligned_cols=152 Identities=15% Similarity=0.102 Sum_probs=118.8
Q ss_pred hhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHH---HHHHHHHHHHHHHHHhhcCChhHHHHHHH
Q psy2962 384 FELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNTANLGGNIYLNFIIS---GMVEIPAYLSSMLTLDRYGRKNFLCPCLI 460 (690)
Q Consensus 384 ~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~l~~i~~~~~~~~l~dr~grr~~l~~~~~ 460 (690)
..-+|+|.++...+...+..+...+......+....+..+.....++. .+-.++..+++|.++||+.||++++.+-+
T Consensus 4 ~aplr~~~Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~ 83 (524)
T PF05977_consen 4 FAPLRNRNFRRLWIAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQL 83 (524)
T ss_pred cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 345789999988888888777777777777666666665555444443 44456677889999999999999999887
Q ss_pred HHHHHHHHHHhc---CCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 461 LSGLCLIVSALL---PLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 461 ~~~i~~l~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+.++..+.+.+. ...+.|..+++.++.+++.....+...+.+.|++|++....+.++.++..++..++||.++|.
T Consensus 84 ~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~ 161 (524)
T PF05977_consen 84 LRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGI 161 (524)
T ss_pred HHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHH
Confidence 776555444332 333466677777888888888899999999999999999999999999999999999999986
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.4e-07 Score=101.11 Aligned_cols=109 Identities=15% Similarity=0.055 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 424 IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPL--DLNTVSIVLAMMGKFFITGAYGAVYIF 501 (690)
Q Consensus 424 ~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~ 501 (690)
.........+...++.++.|+++||+|||+++..+.++.+++.+.+.+.+. .+.+..++..++.+++.+..++.....
T Consensus 65 ~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~ 144 (452)
T PRK11273 65 LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRT 144 (452)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHH
Confidence 445556667778889999999999999999999999888888877766531 223344444556666777777767777
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHH-HHHHH
Q psy2962 502 SAEQFPTVIRNIGIGAGSTFARVGGI-FASYT 532 (690)
Q Consensus 502 ~~e~~p~~~r~~~~g~~~~~~~lg~~-i~p~i 532 (690)
..|.+|++.|++++|+.+....+|+. .+|.+
T Consensus 145 ~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~ 176 (452)
T PRK11273 145 MVHWWSQKERGGIVSVWNCAHNVGGGLPPLLF 176 (452)
T ss_pred HHHhCChHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 88999999999999999999888864 45544
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-07 Score=102.79 Aligned_cols=138 Identities=13% Similarity=0.006 Sum_probs=114.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
..+.+++.+.+.++..+|.++.|+++||+|||+.+.....+..+..++..+.++.+.+.+..++.|++.+..++...++.
T Consensus 240 ~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 319 (394)
T PRK03699 240 LEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYAILGLGFFSSAIYTTIITLG 319 (394)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999988888777777777778887777888999998888888888888
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHHhc
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAYWWFIP 323 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~~~~lp 323 (690)
.|..+ +++++..+....+..+|..++|.+.+.+. ||+..+++.++..++..+.+..++
T Consensus 320 ~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (394)
T PRK03699 320 SQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLG 380 (394)
T ss_pred HHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHH
Confidence 88775 45677788888888999999999988773 788888888877766665555554
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.9e-07 Score=102.60 Aligned_cols=136 Identities=19% Similarity=0.180 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhc---c-ccHHHHHHHHHHHHhhhhhhHHHHHHHHh
Q psy2962 190 TSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAF---A-PDFWTFTACRLIVGASTSGVFLVAYVLAL 265 (690)
Q Consensus 190 li~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~---s-~s~~~l~~~R~l~G~~~g~~~~~~~~~i~ 265 (690)
.+..+..+...++.++.|+++||+|||++++.+.++..++.+.... . ++.+.+++..++.|++.+...+...+++.
T Consensus 290 ~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 369 (438)
T PRK09952 290 NIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFT 369 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666788889999999999999988887766555433322 2 33455556677778888888888899999
Q ss_pred hhcCCCcchhhhhHH-HHHHHHHHHHHHHHHHHhh-----hchHHHHHHHHHHHHHHHHHHHhcCc
Q psy2962 266 EMVGPSKRIIAGTVI-HMFFSIGFLLIAGLAYFVH-----DWRHLDILVTLPGLIYLAYWWFIPES 325 (690)
Q Consensus 266 e~~~~~~R~~~~~~~-~~~~~lG~~l~~~l~~~l~-----~Wr~~~~i~~i~~ll~~~~~~~lpes 325 (690)
|.+|.+.|+...++. ..+..+|..++|.+...+. +|+..+...++..++..+..+.++|.
T Consensus 370 e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 370 EMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcccc
Confidence 999999998888874 4455688888888887762 38888887777777766666666664
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=9e-08 Score=106.58 Aligned_cols=139 Identities=17% Similarity=0.025 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhcc--cc-H-HHHHHHHHHHHhhhhhh-HHHHHH
Q psy2962 188 RGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFA--PD-F-WTFTACRLIVGASTSGV-FLVAYV 262 (690)
Q Consensus 188 ~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s--~s-~-~~l~~~R~l~G~~~g~~-~~~~~~ 262 (690)
.++......++..++.++.|+++||+|||+.++.+.++.+++.++.+.. .+ . .....+.++.+++.+.. .+...+
T Consensus 308 ~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (479)
T PRK10077 308 ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWV 387 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhccccchhHH
Confidence 4555666778888999999999999999999999999988887776542 11 1 12233344444444432 366789
Q ss_pred HHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---------hhchHHHHHHHHHHHHHHHHH-HHhcCch
Q psy2962 263 LALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---------HDWRHLDILVTLPGLIYLAYW-WFIPESA 326 (690)
Q Consensus 263 ~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---------~~Wr~~~~i~~i~~ll~~~~~-~~lpesp 326 (690)
++.|.+|+++|+.++++......+|.++++.+...+ .+|++.|++.++..++..++. ++.||+.
T Consensus 388 ~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 388 LLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 461 (479)
T ss_pred HhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCC
Confidence 999999999999999999999988888876554432 257778888777766655444 4567753
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.7e-07 Score=100.43 Aligned_cols=111 Identities=13% Similarity=-0.052 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2962 425 YLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAE 504 (690)
Q Consensus 425 ~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e 504 (690)
+.......+..+++.+++|++.||+|||+.+..+.++.+++.++..+......+..++.-++.+++.+..++....++.|
T Consensus 79 g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~ 158 (465)
T TIGR00894 79 GLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVK 158 (465)
T ss_pred hHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHh
Confidence 34455566778899999999999999999999988888777766544322223445555667778888888999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 505 QFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 505 ~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
.+|++.|+++.|+......+|.+++|.+.+.
T Consensus 159 ~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~ 189 (465)
T TIGR00894 159 WAPPKERSRLLGMSTSGFQLGTFIFLPISGW 189 (465)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999876
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.4e-07 Score=100.19 Aligned_cols=117 Identities=17% Similarity=0.171 Sum_probs=94.1
Q ss_pred cCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Q psy2962 417 TANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITG 493 (690)
Q Consensus 417 ~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 493 (690)
.+.++.+ .........+..+++.++.|++.||+|||+.+..+.++.++++++..+.+ +.+...+..++.+++.+.
T Consensus 47 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~~~~ 124 (496)
T PRK03893 47 QGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAP--GYWTLFIARLVIGMGMAG 124 (496)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHH
Confidence 3445533 33445556677788899999999999999999999888888887777653 244555566667777788
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 494 AYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 494 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
.++....+..|.+|++.|+.+.|+......+|.+++|.+.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 166 (496)
T PRK03893 125 EYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSL 166 (496)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999999999999876
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.5e-07 Score=98.31 Aligned_cols=110 Identities=12% Similarity=0.052 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2962 424 IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSA 503 (690)
Q Consensus 424 ~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 503 (690)
.........+...++.++.|++.||+|||+.+..+.++.+++.+...+.++ .+..++..++.+++.+...+....+..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~l~g~~~~~~~~~~~~~~~ 105 (377)
T PRK11102 28 VQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQT--IDQLIYMRFLHGLAAAAASVVINALMR 105 (377)
T ss_pred HHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666778889999999999999999999999988888888776543 444555556667777777788889999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 504 EQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 504 e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
|.+|++.|+++.|+.+....+|..++|.+.+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 137 (377)
T PRK11102 106 DMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGW 137 (377)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998876
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.1e-08 Score=107.35 Aligned_cols=137 Identities=21% Similarity=0.158 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccH--HHHHHHHHHHHhhhhhhHHHHHHHHhhh
Q psy2962 190 TSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDF--WTFTACRLIVGASTSGVFLVAYVLALEM 267 (690)
Q Consensus 190 li~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~--~~l~~~R~l~G~~~g~~~~~~~~~i~e~ 267 (690)
+...+..+..+.+.++.++++||+|||+.+.++.++.+++.++..+.++. +..++.-++.+++.+..++..+++..|.
T Consensus 359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 438 (505)
T TIGR00898 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL 438 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34445566777889999999999999999999999999988888776644 5556666777888888889999999999
Q ss_pred cCCCcchhhhhHHHHHHHHHHHHHHHHHHHh-hhchHHHHHHHHHHHHHHHHHHHhcCch
Q psy2962 268 VGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV-HDWRHLDILVTLPGLIYLAYWWFIPESA 326 (690)
Q Consensus 268 ~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l-~~Wr~~~~i~~i~~ll~~~~~~~lpesp 326 (690)
+|++.|+.++++.+....+|.+++|.+.+.. .++...+++.++..++..+..+++||+.
T Consensus 439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~ 498 (505)
T TIGR00898 439 YPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETK 498 (505)
T ss_pred ccHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence 9999999999999999999999999988832 2456677777777777777777888863
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.8e-07 Score=98.46 Aligned_cols=107 Identities=18% Similarity=0.104 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2962 426 LNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQ 505 (690)
Q Consensus 426 ~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~ 505 (690)
.......+..+++.++.|++.||+|||+++..+.++.+++.++..+.++ .+..++..++.+++.+.. .....++.|.
T Consensus 75 ~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s--~~~l~~~r~l~G~~~~~~-~~~~~~i~~~ 151 (476)
T PLN00028 75 NAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSS--ATGFIAVRFFIGFSLATF-VSCQYWMSTM 151 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHhh-HHHHHHHHHh
Confidence 3444555667888999999999999999999888888887777666543 333334444445555443 3345578899
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 506 FPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 506 ~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+|++.|+.++|+.+....+|+.+++.+.+.
T Consensus 152 ~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~ 181 (476)
T PLN00028 152 FNGKIVGTANGIAAGWGNLGGGVTQLLMPL 181 (476)
T ss_pred cChhheeHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888888887766654
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.9e-07 Score=102.76 Aligned_cols=112 Identities=14% Similarity=0.128 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 424 IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPL--DLNTVSIVLAMMGKFFITGAYGAVYIF 501 (690)
Q Consensus 424 ~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~ 501 (690)
.........+...++.++.|++.||+|||+.+..+.++.+++.++....+. .+.+...+..++.+++.+..++.....
T Consensus 63 ~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~ 142 (438)
T TIGR00712 63 LGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRT 142 (438)
T ss_pred hHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 445556667778899999999999999999999888888887776655432 222333344455566667777777888
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 502 SAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 502 ~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+.|.+|++.|++++|+.++...+|++++|.+.+.
T Consensus 143 i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~ 176 (438)
T TIGR00712 143 MVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLL 176 (438)
T ss_pred HHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHH
Confidence 8999999999999999999999999998877654
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.3e-07 Score=102.71 Aligned_cols=111 Identities=19% Similarity=0.026 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 423 NIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLD-LNTVSIVLAMMGKFFITGAYGAVYIF 501 (690)
Q Consensus 423 ~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~ 501 (690)
..........++..++.++.|++.||+|||+.+..+.++.+++.++..+.... ..+..++..++.+++.+...+....+
T Consensus 72 ~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~ 151 (481)
T TIGR00879 72 LWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMY 151 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHH
Confidence 34556667778888999999999999999999999988888887777554432 22345556677778888888889999
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 502 SAEQFPTVIRNIGIGAGSTFARVGGIFASYTS 533 (690)
Q Consensus 502 ~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~ 533 (690)
+.|.+|++.|+.+.++.+....+|.+++|.+.
T Consensus 152 i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 183 (481)
T TIGR00879 152 LSEIAPKALRGALTSLYQLAITFGILVAYGFG 183 (481)
T ss_pred HHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999987
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.2e-06 Score=95.10 Aligned_cols=110 Identities=15% Similarity=0.046 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2962 424 IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSA 503 (690)
Q Consensus 424 ~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 503 (690)
......+..+...++.++.|+++||+|||+.+..+.++.+++.++..+.++ .+..++..++.+++.+...+....+..
T Consensus 43 ~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~l~G~~~~~~~~~~~~~~~ 120 (401)
T PRK11043 43 VSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVES--AAQLLVLRFVQAVGVCSAAVIWQALVI 120 (401)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344455566777889999999999999999999988888877777666543 344444445555665556666677889
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 504 EQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 504 e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
|.+|++.++...+..+....+|..++|.+.++
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~ 152 (401)
T PRK11043 121 DRYPAQKANRVFATIMPLVALSPALAPLLGAW 152 (401)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999989999999988889999999999876
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.2e-07 Score=101.77 Aligned_cols=110 Identities=10% Similarity=-0.076 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2962 424 IYLNFIISGMVEIPAYLSSMLTLDR-YGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFS 502 (690)
Q Consensus 424 ~~~~~~~~~l~~i~~~~~~~~l~dr-~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 502 (690)
.........+...++.+++|++.|| +|||+++..+.++.+++.+++.+.++ .+...+..++.+++.+...+....+.
T Consensus 50 ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~--~~~~~~~~~l~g~g~g~~~~~~~~~~ 127 (475)
T TIGR00924 50 AFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIY--PDLIFYGLGTIAVGSGLFKANPSSMV 127 (475)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhccc--HhHHHHHHHHHHhccccccCCHHHHH
Confidence 4455566677788999999999999 89999999999999988887776542 33333344445566666777888889
Q ss_pred hcccchH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 503 AEQFPTV---IRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 503 ~e~~p~~---~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
++.+|++ .|+.+.++.....++|++++|.+.++
T Consensus 128 a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~ 163 (475)
T TIGR00924 128 GKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGV 163 (475)
T ss_pred HHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHH
Confidence 9999865 48889999999999999999999887
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.5e-07 Score=101.31 Aligned_cols=129 Identities=16% Similarity=0.105 Sum_probs=101.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHH--hhhhc--cccHHHHHHHHHHHHhhhhhhHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFG--TLAAF--APDFWTFTACRLIVGASTSGVFLVA 260 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~--~~~~~--s~s~~~l~~~R~l~G~~~g~~~~~~ 260 (690)
+.+.+...+...++..++.++.|+++||+|||+.++.+..+..+.. ++..+ .++.+.+++..++.|++.+...+..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 333 (394)
T TIGR00883 254 ANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGMYTGPM 333 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhhH
Confidence 4567888889999999999999999999999998775554444333 22222 3567777888899999999999999
Q ss_pred HHHHhhhcCCCcchhhhhH-HHHHHHHHHHHHHHHHHHhh---h-chHHHHHHHHHHH
Q psy2962 261 YVLALEMVGPSKRIIAGTV-IHMFFSIGFLLIAGLAYFVH---D-WRHLDILVTLPGL 313 (690)
Q Consensus 261 ~~~i~e~~~~~~R~~~~~~-~~~~~~lG~~l~~~l~~~l~---~-Wr~~~~i~~i~~l 313 (690)
.+++.|.+|+++|+++.++ .+.+..+|..++|.+++.+. + |+..++...+..+
T Consensus 334 ~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 334 GSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 9999999999999999987 45667788888998888773 3 7777666555443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-07 Score=97.64 Aligned_cols=143 Identities=16% Similarity=0.117 Sum_probs=120.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 422 GNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIF 501 (690)
Q Consensus 422 ~~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 501 (690)
.+.........+..-++.++.|.++||.+.|..+..+++++++..+++.+.+ +.++..++..+-+.+.+..+|.+.-.
T Consensus 64 ~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~--s~~~~~~l~~lng~fQg~Gwpp~~~~ 141 (448)
T COG2271 64 TQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSP--SLFLFAVLWVLNGWFQGMGWPPCART 141 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcCCCcHHHHH
Confidence 3455666777788889999999999999999999999999999999999876 46667777788899999999999999
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHHHH--HHccccccccCccccccccccccchhhccccCCCcchhhccccchh
Q psy2962 502 SAEQFPTVIRNIGIGAGSTFARVGGIFASYTS--VLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVI 579 (690)
Q Consensus 502 ~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (690)
+..-+|++.||+..++-+++.++|+.+.|.+. +... .
T Consensus 142 i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~------~----------------------------------- 180 (448)
T COG2271 142 ITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFA------F----------------------------------- 180 (448)
T ss_pred HHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHH------h-----------------------------------
Confidence 99999999999999999999999999999888 5411 1
Q ss_pred hhhhhhhhhhcccchhhHHHHHHHHHHHHHHhh-hccCC
Q psy2962 580 LIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSL-ILPET 617 (690)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~lpet 617 (690)
..+....|++-++++++.+++++ .++++
T Consensus 181 ----------~~~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 181 ----------HGGWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred ----------ccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44667889999998888888776 44443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-06 Score=95.04 Aligned_cols=144 Identities=13% Similarity=-0.027 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q psy2962 392 LFKKSVIIFFLWFVCSLTYYGLSWNTANLGG---NIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIV 468 (690)
Q Consensus 392 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~ 468 (690)
+....+..++........+..+..+.++++. +........++...++.++.|++.||+|||+.+..+..+.+++.++
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~ 94 (402)
T TIGR00897 15 LLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAA 94 (402)
T ss_pred hhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 3334444444444433333333323344443 3455566777888999999999999999999999988888877654
Q ss_pred HHhc--CCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q psy2962 469 SALL--PLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGG-IFASYTSVL 535 (690)
Q Consensus 469 ~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~-~i~p~i~~~ 535 (690)
.... ...+.+..++...+.+++.+...+.......+.+|+++|++++|+.++...+|. +++|.+.++
T Consensus 95 ~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~ 164 (402)
T TIGR00897 95 FIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSY 164 (402)
T ss_pred HHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4321 122233444444555566666666667778899999999999999999999996 578888765
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=6e-07 Score=98.58 Aligned_cols=103 Identities=15% Similarity=0.061 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCCh------hHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2962 432 GMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDL------NTVSIVLAMMGKFFITGAYGAVYIFSAEQ 505 (690)
Q Consensus 432 ~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~~e~ 505 (690)
.++..++.++.|++.||+|||+.+..+.++.+++.++..+.++.. ....+++-++.+++.++.++...+++.|.
T Consensus 73 ~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~ 152 (432)
T PRK10406 73 FLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEV 152 (432)
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHh
Confidence 344458899999999999999999999999999998888776432 12344455677788888899999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 506 FPTVIRNIGIGAGSTFARVGGIFASYTSV 534 (690)
Q Consensus 506 ~p~~~r~~~~g~~~~~~~lg~~i~p~i~~ 534 (690)
+|++.|+...++.......|.++++.+..
T Consensus 153 ~p~~~rg~~~~~~~~~~~~G~~~~~~~~~ 181 (432)
T PRK10406 153 AVEGRKGFYASFQYVTLIGGQLLALLVVV 181 (432)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887777777777776544
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.7e-06 Score=93.77 Aligned_cols=110 Identities=12% Similarity=-0.069 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2962 424 IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSA 503 (690)
Q Consensus 424 ~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 503 (690)
.........+..+++.++.|+++||+|||+.+..+.++.+++.+.....++ .+..++..++.+++.+...+....+..
T Consensus 45 ~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~~~~~~~~~~~~ 122 (394)
T PRK11652 45 VQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHS--LTVLIAASAIQGLGTGVGGVMARTLPR 122 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 344455666777889999999999999999999988888877776665432 444445555566666666667777888
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 504 EQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 504 e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
|.++.+.++.+.++.+....++..++|.+.+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~ 154 (394)
T PRK11652 123 DLYEGTQLRHANSLLNMGILVSPLLAPLIGGL 154 (394)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998999999999999999999999998876
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.4e-07 Score=99.67 Aligned_cols=122 Identities=13% Similarity=0.036 Sum_probs=85.7
Q ss_pred HhhccCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q psy2962 413 LSWNTANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRY-GRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGK 488 (690)
Q Consensus 413 ~~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~-grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~ 488 (690)
+.+..+.++.+ .........+...++.+++|+++||+ |||+++..+.++.+++.+++...... .....+...+..
T Consensus 33 ~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~-~~~~~l~l~li~ 111 (493)
T PRK15462 33 ILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIH-PSFLYLSLAIIV 111 (493)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHHHHHHHH
Confidence 33434445533 33344445566678889999999999 99999999999888887665542211 112222222333
Q ss_pred HHHHHHHHHHHHHhhcccchH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 489 FFITGAYGAVYIFSAEQFPTV--IRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 489 ~~~~~~~~~~~~~~~e~~p~~--~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
++.+...+...++.+|.+|++ .|.++.++.....++|++++|.+.++
T Consensus 112 iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~ 160 (493)
T PRK15462 112 CGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGY 160 (493)
T ss_pred HhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHH
Confidence 444555566778899999975 69999999999999999999999987
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-06 Score=92.83 Aligned_cols=109 Identities=19% Similarity=0.048 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2962 424 IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSA 503 (690)
Q Consensus 424 ~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 503 (690)
.........+...++.+..|++.||+|||+++.........+.+ ...... +.+..++.-++.+++.+. ........+
T Consensus 28 ~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~~~~-~~~~l~~~R~l~G~g~~~-~~~~~~~~~ 104 (368)
T TIGR00903 28 LGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLLDPF-NYEWLLACQLLAALGQPF-LLNAFAPAA 104 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHHHhc-cHHHHHHHHHHHHhHhHH-HHHHHHHHH
Confidence 34455556677788999999999999999877655544443332 222212 244455555666666664 445555668
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 504 EQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 504 e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
|.+|++.|++++++.+....+|.+++|.+.++
T Consensus 105 ~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~ 136 (368)
T TIGR00903 105 SQIREERRDLVISLLSFAMYLGIIFALAAGLK 136 (368)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988776
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.7e-07 Score=98.06 Aligned_cols=140 Identities=16% Similarity=0.153 Sum_probs=107.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccc-cHHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAP-DFWTFTACRLIVGASTSGVFLVAYVL 263 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~-s~~~l~~~R~l~G~~~g~~~~~~~~~ 263 (690)
..+.+...+.+.++.++|.++.|++.||+|||+.+..+..+..++.++....+ +...+ .-++.|++.+...+.....
T Consensus 239 ~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~g~g~g~~~~~~~~~ 316 (393)
T PRK09705 239 AQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVCGLGLGGAFPLCLLL 316 (393)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHHHHhccchHHHHHHH
Confidence 46788999999999999999999999999999999988888777766554333 32222 2346788888888888777
Q ss_pred HhhhcC-CCcchhhhhHHHHHHHHHHHHHHHHHHHhh----hchHHHHHHHHHHHHHHHH-HHHhcCch
Q psy2962 264 ALEMVG-PSKRIIAGTVIHMFFSIGFLLIAGLAYFVH----DWRHLDILVTLPGLIYLAY-WWFIPESA 326 (690)
Q Consensus 264 i~e~~~-~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~----~Wr~~~~i~~i~~ll~~~~-~~~lpesp 326 (690)
..+..+ +++|++..++.+....++..++|.+.+++. +|...+.+.++..++..+. ..+.||.+
T Consensus 317 ~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (393)
T PRK09705 317 ALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARF 385 (393)
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccc
Confidence 777775 567899999999999999999999888874 3677777777666655443 44567654
|
|
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=98.65 E-value=7.9e-08 Score=97.97 Aligned_cols=107 Identities=21% Similarity=0.193 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHH-HHHHHHHHHHHHHHHHHHhh
Q psy2962 425 YLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVL-AMMGKFFITGAYGAVYIFSA 503 (690)
Q Consensus 425 ~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~ 503 (690)
+.....+++..++.+...|.++||+|||.++.++.+..++..++.+... +. ..++. -+++ ....+..++..++++
T Consensus 71 GflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~--~F-~afv~aR~l~-Gi~kgnl~v~rAiis 146 (451)
T KOG2615|consen 71 GFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR--NF-AAFVLARFLG-GIFKGNLSVIRAIIS 146 (451)
T ss_pred hhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHhh-hhccCchHHHHHHHH
Confidence 4556667788999999999999999999999999998888666655532 12 22233 2333 333455678899999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 504 EQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 504 e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
|+++++.|+.+++..++...+|.++||.++++
T Consensus 147 dV~sek~r~l~ms~v~~a~~lGfilGPmIGgy 178 (451)
T KOG2615|consen 147 DVVSEKYRPLGMSLVGTAFGLGFILGPMIGGY 178 (451)
T ss_pred hhcChhhccceeeeeehhhhcchhhcchhhhH
Confidence 99999999999999999999999999999987
|
|
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.6e-07 Score=96.43 Aligned_cols=145 Identities=20% Similarity=0.132 Sum_probs=121.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2962 423 NIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFS 502 (690)
Q Consensus 423 ~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 502 (690)
..++.+...++.+++...+.|.++||+|+|..++++++++....+++++..+ .+..++.-.+-+.+.++......+++
T Consensus 107 ~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~s--y~~l~vAR~LQgvgsA~~~tsglaml 184 (464)
T KOG3764|consen 107 QIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNS--YPMLFVARSLQGVGSAFADTSGLAML 184 (464)
T ss_pred chhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcch--hHHHHHHHHHhhhhHHHHHhhhHHHH
Confidence 4567777788999999999999999999999999999999999999888643 44555666777788888888999999
Q ss_pred hcccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHccccccccCccccccccccccchhhccccCCCcchhhccccchhhh
Q psy2962 503 AEQFPTVI-RNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVILI 581 (690)
Q Consensus 503 ~e~~p~~~-r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (690)
++.||.+. |+.++|+.-.+..+|-+++|.++|..+ +
T Consensus 185 Ad~f~~d~er~~vmGialgfislG~lvgPpfGGilY------e------------------------------------- 221 (464)
T KOG3764|consen 185 ADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILY------E------------------------------------- 221 (464)
T ss_pred HHHcccchhhhHHHHHHHHHHhccceecCCcccchH------h-------------------------------------
Confidence 99999865 799999999999999999999988622 2
Q ss_pred hhhhhhhhcccchhhHHHHHHHHHHHHHHhhhc-cCCCCC
Q psy2962 582 DQVFLLQVEIWLPLPFLMFGVLSLTAGILSLIL-PETHHK 620 (690)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l-pet~~~ 620 (690)
..++..||++.++++++.+++.+++ +.++.+
T Consensus 222 --------~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~ 253 (464)
T KOG3764|consen 222 --------FAGKSAPFLVLAIVLLLDGALQLLVIEPTEMD 253 (464)
T ss_pred --------hcCCcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence 5678999999999999999988754 444433
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.7e-07 Score=95.98 Aligned_cols=130 Identities=12% Similarity=0.003 Sum_probs=107.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
....|++.++..++..++.++.|++.||+|+|+.+..+.++.+++.++.+++++.+.+++..++.|++.+...+....++
T Consensus 239 ~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 318 (382)
T PRK11128 239 ASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFTVCHLAAMRYI 318 (382)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688888888899999999999999999999999999999999888888899999999999999999999999999988
Q ss_pred hhhcCCCcchhhhhHHH-HHHHHHHHHHHHHHHHhhhc--hHHHHHHHHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIH-MFFSIGFLLIAGLAYFVHDW--RHLDILVTLPGLIY 315 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~-~~~~lG~~l~~~l~~~l~~W--r~~~~i~~i~~ll~ 315 (690)
.+. +++++++..++.. ....+|..++|.+++.+.+. ...++..++.+++.
T Consensus 319 ~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~~~~~~~~~~~~ 371 (382)
T PRK11128 319 AAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAGVFWVMALVALPA 371 (382)
T ss_pred HHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 886 5666788888775 55678888999999888532 13455555544443
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.9e-06 Score=92.07 Aligned_cols=117 Identities=15% Similarity=0.203 Sum_probs=86.8
Q ss_pred cCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Q psy2962 417 TANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITG 493 (690)
Q Consensus 417 ~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 493 (690)
.+.++.+ ..+......+..+++.++.|++.||+|||+.+..+.++.+++.++..+.+. +.+..++..++.+++. .
T Consensus 29 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~g~~~-~ 106 (366)
T TIGR00886 29 KDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQ-SYSVLLLLRLFIGIAG-G 106 (366)
T ss_pred HHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhc-h
Confidence 3445533 344555667778899999999999999999999999999888888777642 2444444444444543 3
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 494 AYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 494 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
.+.....++.|.+|++.|+.+.++......+|..+++.+.+.
T Consensus 107 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~ 148 (366)
T TIGR00886 107 SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPP 148 (366)
T ss_pred hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455667889999999999999999998888888877777653
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.6e-07 Score=97.02 Aligned_cols=114 Identities=19% Similarity=0.197 Sum_probs=98.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhcc-ccHHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFA-PDFWTFTACRLIVGASTSGVFLVAYVL 263 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s-~s~~~l~~~R~l~G~~~g~~~~~~~~~ 263 (690)
+...+++.++..++.+++.+++|+++||+|||+++.++.++.+++.++..+. .+.+.+++..++.|++.+...+...++
T Consensus 256 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 335 (437)
T TIGR00792 256 PELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWAL 335 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888899999999999999999999999999998888887777665 466777888899999999999999999
Q ss_pred HhhhcC-------CCcchhhhhHHHHHHHHHHHHHHHHHHHh
Q psy2962 264 ALEMVG-------PSKRIIAGTVIHMFFSIGFLLIAGLAYFV 298 (690)
Q Consensus 264 i~e~~~-------~~~R~~~~~~~~~~~~lG~~l~~~l~~~l 298 (690)
+.|..+ ++++|.+.++.+....+|..+++.+.+.+
T Consensus 336 ~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 336 VADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred HhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998875 55679999999999999999998888776
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=98.61 E-value=5.1e-06 Score=92.64 Aligned_cols=128 Identities=15% Similarity=0.022 Sum_probs=87.3
Q ss_pred HHHHHHhhccCCCCchHHHHHHHHHHHH-HHHHHHHHHHHhhc-----CChhH-HHHHHHHHHHHHHHHHhcCC-ChhHH
Q psy2962 408 LTYYGLSWNTANLGGNIYLNFIISGMVE-IPAYLSSMLTLDRY-----GRKNF-LCPCLILSGLCLIVSALLPL-DLNTV 479 (690)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~~~~~~l~~-i~~~~~~~~l~dr~-----grr~~-l~~~~~~~~i~~l~~~~~~~-~~~~~ 479 (690)
......+.+....+.+......+..+.. .++.++.+.++||+ |||+. +..+.++.+++...+.+.+. .+.+.
T Consensus 30 ~~~~~l~~~l~~~g~~~~~ig~~~~~~~~~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~ 109 (491)
T PRK11010 30 LTSGTLQAWMTVENIDLKTIGFFSLVGQAYVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRW 109 (491)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHH
Confidence 3333334444444544433333322221 26889999999999 98875 55666666666666656532 33444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 480 SIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 480 ~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
..+..++.+++.+...+...++..|.+|++.|+.+.++......+|.++++.+.++
T Consensus 110 l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~ 165 (491)
T PRK11010 110 LAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALW 165 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566667777777888999999999999999999999999999999888776
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.1e-06 Score=108.76 Aligned_cols=150 Identities=9% Similarity=-0.067 Sum_probs=98.9
Q ss_pred hhccCcHHHHHHHHHHHHHHHHHHHHHHH----hhc-cCCCCc----hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHH
Q psy2962 385 ELFRHPNLFKKSVIIFFLWFVCSLTYYGL----SWN-TANLGG----NIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFL 455 (690)
Q Consensus 385 ~l~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~-~~~l~~----~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l 455 (690)
+++|++.++...+..++..+...+....+ .+. ....+. ...+...+..+..++..+++|+++||+|||+++
T Consensus 6 ~l~~~~~f~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~ 85 (1140)
T PRK06814 6 YLMKSRRFAPLFWTQFFGAFNDNFLKNALVILILYGLSGALGAYNNALVTLAGAVFILPFFIFSALAGQLADKYDKAKLA 85 (1140)
T ss_pred hhhhccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHH
Confidence 46677777766555555544333222221 111 122221 123344455566778889999999999999976
Q ss_pred HHHHHHHH--HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 456 CPCLILSG--LCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTS 533 (690)
Q Consensus 456 ~~~~~~~~--i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~ 533 (690)
.....+.. ....++.+.. .+.+..+++.++.+++.++..+...+++.+++|++.|+.++|+.++...+|.+++|.+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~-~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~ 164 (1140)
T PRK06814 86 KILKFAEIGIAALAIYGFHL-NSVPLLFAALFLMGIHSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIG 164 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHH
Confidence 43222211 1111222221 33556666777778888888899999999999999999999999999999999999999
Q ss_pred HH
Q psy2962 534 VL 535 (690)
Q Consensus 534 ~~ 535 (690)
++
T Consensus 165 g~ 166 (1140)
T PRK06814 165 GL 166 (1140)
T ss_pred HH
Confidence 87
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.2e-07 Score=109.53 Aligned_cols=111 Identities=8% Similarity=-0.080 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2962 425 YLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALL-PLDLNTVSIVLAMMGKFFITGAYGAVYIFSA 503 (690)
Q Consensus 425 ~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 503 (690)
.+...+..+..+++.+++|+++||+|||++++.+.++.++..++..+. .....+..++..++.+++.+...+...+++.
T Consensus 50 ~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 129 (1146)
T PRK08633 50 AIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIP 129 (1146)
T ss_pred HHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhH
Confidence 344455566678889999999999999999988876655555443332 1122455566666777888888889999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 504 EQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 504 e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
|.+|++.|+.++|+......+|.+++|.+.++
T Consensus 130 ~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~ 161 (1146)
T PRK08633 130 ELVGKENLSRANGLLEAFTIVAILAGTALFSF 161 (1146)
T ss_pred HhcCcccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999886
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.7e-06 Score=91.48 Aligned_cols=122 Identities=10% Similarity=-0.097 Sum_probs=96.7
Q ss_pred hhccCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHH
Q psy2962 414 SWNTANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLP-LDLNTVSIVLAMMGKF 489 (690)
Q Consensus 414 ~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~-~~~~~~~~~~~~l~~~ 489 (690)
+...+.++.+ .........++.+++.+..+++.||+|||+.+..+.++.++++++..... ..+.+..++..++.++
T Consensus 27 ~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~ 106 (410)
T TIGR00885 27 PQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTA 106 (410)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHh
Confidence 3334555533 44555666778889999999999999999999999999888887754432 2234455566677788
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 490 FITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 490 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+.+...+....++.+..|++.|++..++.+....+|..++|.+.+.
T Consensus 107 g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~ 152 (410)
T TIGR00885 107 GLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQ 152 (410)
T ss_pred hHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888899999999999999999999999999999998875
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.1e-06 Score=95.15 Aligned_cols=133 Identities=11% Similarity=0.051 Sum_probs=112.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHHh
Q psy2962 186 WYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLAL 265 (690)
Q Consensus 186 ~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i~ 265 (690)
...|++.++..+...++.+..|++.||+|||+.+.++.++.+++.++.+++++.+.+++.+++.|++..........++.
T Consensus 254 ~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 333 (396)
T TIGR00882 254 RVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYIT 333 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688888888888999999999999999999999999998988888788899999999999999988777777777888
Q ss_pred hhcCCCcchhhhhH-HHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHH
Q psy2962 266 EMVGPSKRIIAGTV-IHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAY 318 (690)
Q Consensus 266 e~~~~~~R~~~~~~-~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~ 318 (690)
+..+++.++...+. .+....+|..+++.+++++. ||+..|.+.++..++..+.
T Consensus 334 ~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 334 SQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 88888888887665 67888999999998888874 6888999888877665443
|
|
| >KOG3810|consensus | Back alignment and domain information |
|---|
Probab=98.56 E-value=5.7e-07 Score=90.41 Aligned_cols=312 Identities=13% Similarity=0.045 Sum_probs=181.4
Q ss_pred HHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCcchhhhhH
Q psy2962 200 LLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTV 279 (690)
Q Consensus 200 ~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~ 279 (690)
+++-++.=.+.|-.--|+++++-.+......++.-+.++.+.+=+.-++.|...+. ..+-++++-+.++|+++-++.+.
T Consensus 56 Lv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAa-EIAYysYIYs~Vd~~~Yqrvt~y 134 (433)
T KOG3810|consen 56 LVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAA-EIAYYSYIYSKVDPEMYKRVTGY 134 (433)
T ss_pred HHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHH-HHhhhheeeeecCHHHHHHHHHH
Confidence 44445666788988889999998888888889999999999999999999996655 57889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh-----hchHHHHHHHHHHHHHHHHHHHhcCchhHHHhcCCHHHHHHHHHHHHHHcCCcch
Q psy2962 280 IHMFFSIGFLLIAGLAYFVH-----DWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILE 354 (690)
Q Consensus 280 ~~~~~~lG~~l~~~l~~~l~-----~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~~~~ea~~~l~~~~~~n~~~~~ 354 (690)
..++.-.|...+..++-.+. +++.+-.+.-....+..+..+++|..+|-+.-+.+.++- ........+.....
T Consensus 135 ~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~--~v~~~e~~~~~~~~ 212 (433)
T KOG3810|consen 135 CRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKI--SVGDLEEMNPQASY 212 (433)
T ss_pred hHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccc--eeccchhcCccchh
Confidence 99988888888888887773 344455555444445556667787766544433332210 00000000000000
Q ss_pred hhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHH-HHHHHHHHHhhccCCCCch-HH---HHHH
Q psy2962 355 GFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWF-VCSLTYYGLSWNTANLGGN-IY---LNFI 429 (690)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~l~~~-~~---~~~~ 429 (690)
. ...+.....-...+.+..++|.+++-.+-..+... .....+|...+....-... .- ..=.
T Consensus 213 -------------~-~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veA 278 (433)
T KOG3810|consen 213 -------------M-SYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEA 278 (433)
T ss_pred -------------h-HHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHH
Confidence 0 00000000111234455667765543332222222 2223333333322111111 11 1223
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q psy2962 430 ISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTV 509 (690)
Q Consensus 430 ~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~ 509 (690)
+..+.+.++.++.|.+--.+.|+.-+.++..-...+.+++........|+..+..++.+..+....++...-+++....+
T Consensus 279 v~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~nL~~e 358 (433)
T KOG3810|consen 279 VSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIARNLSSE 358 (433)
T ss_pred HHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHHhhhhh
Confidence 44455667777777776555554333222222222222222223344667777777777777777777766677777777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy2962 510 IRNIGIGAGSTFARVGGIF 528 (690)
Q Consensus 510 ~r~~~~g~~~~~~~lg~~i 528 (690)
.-|..+|+..+++-+-..+
T Consensus 359 ~~gLvFGiNTFvAl~lQsi 377 (433)
T KOG3810|consen 359 LFGLVFGINTFVALILQSI 377 (433)
T ss_pred hheeeeehHHHHHHHHHHh
Confidence 7788888887776555444
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=98.54 E-value=1e-07 Score=99.96 Aligned_cols=145 Identities=17% Similarity=0.115 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2962 424 IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSA 503 (690)
Q Consensus 424 ~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 503 (690)
.++......++..+++++.|++.||+.|++++.++..+-.++.+...+. ...|..+++-.+.+++.+...++...+++
T Consensus 70 ~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs--~~Fwq~~l~R~~vGiGeAs~~~ia~s~Ia 147 (493)
T KOG1330|consen 70 LGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS--NHFWQVLLCRGFVGIGEASYSPIAPSLIA 147 (493)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH--HHHHHHHHHHHHhccchhhhcccchhHhh
Confidence 4466677778889999999999999999999999999999888888776 44677777778888999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCccccccccccccchhhccccCCCcchhhccccchhhhhh
Q psy2962 504 EQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVILIDQ 583 (690)
Q Consensus 504 e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (690)
|.+|...|++++++.+++..+|+++|-.+...++ .
T Consensus 148 D~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va------~--------------------------------------- 182 (493)
T KOG1330|consen 148 DSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVA------S--------------------------------------- 182 (493)
T ss_pred hcCcchhhhHHHHHhhhhcccccceeEEeeeeec------c---------------------------------------
Confidence 9999999999999999999999877765554421 1
Q ss_pred hhhhhhcccchhhHHHHHHHHHHHHHHhh-hccCCCCC
Q psy2962 584 VFLLQVEIWLPLPFLMFGVLSLTAGILSL-ILPETHHK 620 (690)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~lpet~~~ 620 (690)
...+..+.|.+.++++++++++.+ +++|.+++
T Consensus 183 -----~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rg 215 (493)
T KOG1330|consen 183 -----LTFWWRWAFRGSAVLGVIVGLLVFLFVREPERG 215 (493)
T ss_pred -----CccceEEEEEeehHHHHHHHHHHHhhccCcccc
Confidence 034467788899999999999887 67776544
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.6e-06 Score=90.76 Aligned_cols=98 Identities=14% Similarity=0.030 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCC----ChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Q psy2962 437 PAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPL----DLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRN 512 (690)
Q Consensus 437 ~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~ 512 (690)
.+.++.|++.||+|+|+++.++.++.+++.++.++... .+.+...+..++.+++.+..++.....+.+.+| +.||
T Consensus 76 ~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG 154 (591)
T PTZ00207 76 YFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRG 154 (591)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhH
Confidence 34557899999999999999999999999988877521 234455555566677777777777778888998 6699
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHH
Q psy2962 513 IGIGAGSTFARVGGIF-ASYTSVL 535 (690)
Q Consensus 513 ~~~g~~~~~~~lg~~i-~p~i~~~ 535 (690)
.+.|+......+|+++ +++..++
T Consensus 155 ~a~Gi~~~~~gLGsaI~~~l~~~l 178 (591)
T PTZ00207 155 AVVAIMKTFTGLGSAILGSIQLAF 178 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999976 4444444
|
|
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.8e-07 Score=95.56 Aligned_cols=105 Identities=20% Similarity=0.099 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy2962 429 IISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPL-DLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFP 507 (690)
Q Consensus 429 ~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p 507 (690)
....+++++|.+++++++||+|||..+.+..++..++.++..+... ....+.++.-++.+...+........|..|..|
T Consensus 67 s~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP 146 (485)
T KOG0569|consen 67 SIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISP 146 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCh
Confidence 4455778899999999999999999988888777776666655422 234455556677778888888899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 508 TVIRNIGIGAGSTFARVGGIFASYTS 533 (690)
Q Consensus 508 ~~~r~~~~g~~~~~~~lg~~i~p~i~ 533 (690)
++.||....+..+...+|..++..++
T Consensus 147 ~~~RG~~g~~~~~~~~~g~ll~~~~~ 172 (485)
T KOG0569|consen 147 KNLRGALGTLLQIGVVIGILLGQVLG 172 (485)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHc
Confidence 99999998888888888888875554
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=9e-06 Score=88.46 Aligned_cols=110 Identities=10% Similarity=0.129 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhc---CCChhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 424 IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALL---PLDLNTVSIVLAMMGKFFITGAYGAVYI 500 (690)
Q Consensus 424 ~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 500 (690)
......+..+...++.+..|++.||+|.|+++..+.++.++..+...+. ..++.+..+++.++.+++ +..++....
T Consensus 72 ~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~ 150 (462)
T PRK15034 72 LFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMG 150 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHH
Confidence 4455555667777888889999999999999999998888888877764 113345555555666665 668888899
Q ss_pred HhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 501 FSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSV 534 (690)
Q Consensus 501 ~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~ 534 (690)
.+++.+|++.||++.|+....+.+|..+++++..
T Consensus 151 ~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p 184 (462)
T PRK15034 151 NISFFFPKAKQGSALGINGGLGNLGVSVMQLVAP 184 (462)
T ss_pred HHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999999997777777765555443
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.1e-06 Score=93.58 Aligned_cols=151 Identities=11% Similarity=-0.021 Sum_probs=94.0
Q ss_pred hhhccCcH-HHHHHHHHHHHHHHHH-HHHHHHhhccCCCCchHHHH---HHHHHHHHHHHHHHHHHHHhh-cCChhHHHH
Q psy2962 384 FELFRHPN-LFKKSVIIFFLWFVCS-LTYYGLSWNTANLGGNIYLN---FIISGMVEIPAYLSSMLTLDR-YGRKNFLCP 457 (690)
Q Consensus 384 ~~l~~~~~-~~~~~l~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~---~~~~~l~~i~~~~~~~~l~dr-~grr~~l~~ 457 (690)
.+++|+|+ ++...+..+...+... ...+...+..+.++.+.... ............+++|++.|| +|||+.+..
T Consensus 14 ~~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~ 93 (500)
T PRK09584 14 LNAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIML 93 (500)
T ss_pred hhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 34556664 4433333333333322 22233344445566433222 222222233344688999999 599999999
Q ss_pred HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 458 CLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTV--IRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 458 ~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+.++.+++.+++.+.+.. .+...+...+.+++.+...+....+..|.+|++ .|..+.++.+...++|++++|.+.++
T Consensus 94 g~~~~~ig~~l~~~~~~~-~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~ 172 (500)
T PRK09584 94 GAIVLAIGYALVAWSGHD-AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPW 172 (500)
T ss_pred HHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 999888887777664322 223333334455666666677778899999854 34567888899999999999999987
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=2e-06 Score=88.38 Aligned_cols=129 Identities=28% Similarity=0.421 Sum_probs=108.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhcccc--HHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2962 186 WYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPD--FWTFTACRLIVGASTSGVFLVAYVL 263 (690)
Q Consensus 186 ~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s--~~~l~~~R~l~G~~~g~~~~~~~~~ 263 (690)
...++..+.+.++..++.++.|.++||+|||+.++.+.....++.++.++..+ .+.+++.|++.|++.+...+....+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 118 (338)
T COG0477 39 LLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL 118 (338)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 46899999999999999999999999999998888888776666677777766 8999999999999999999999999
Q ss_pred HhhhcCC-CcchhhhhHHHH-HHHHHHHHHHHHHHHhh-----hchHHHHHHHHHHHH
Q psy2962 264 ALEMVGP-SKRIIAGTVIHM-FFSIGFLLIAGLAYFVH-----DWRHLDILVTLPGLI 314 (690)
Q Consensus 264 i~e~~~~-~~R~~~~~~~~~-~~~lG~~l~~~l~~~l~-----~Wr~~~~i~~i~~ll 314 (690)
+.|+.++ ++|+...+.... ...+|.++++.++..+. +||..+.+.......
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (338)
T COG0477 119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL 176 (338)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 9999988 678888888888 58888888887776653 688866655555433
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.5e-06 Score=87.80 Aligned_cols=117 Identities=15% Similarity=0.143 Sum_probs=89.5
Q ss_pred CCCC---chHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Q psy2962 418 ANLG---GNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGA 494 (690)
Q Consensus 418 ~~l~---~~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 494 (690)
++++ .+.++...+..+.+.+.++..+.+.||+|.|+....++++..+-++.+.+.........++..-+.....++.
T Consensus 42 ~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~Gas 121 (417)
T COG2223 42 SDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLAGAS 121 (417)
T ss_pred cccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcccce
Confidence 5555 3455666677788888999999999999999999999999888888887765433222223333333455677
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 495 YGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 495 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+++...++++.||++++|.++|+.. .+++|..+..++..+
T Consensus 122 Fav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~ 161 (417)
T COG2223 122 FAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPL 161 (417)
T ss_pred ehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHH
Confidence 8888999999999999999999999 999888776666554
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.1e-05 Score=86.63 Aligned_cols=108 Identities=9% Similarity=-0.038 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2962 425 YLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAE 504 (690)
Q Consensus 425 ~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e 504 (690)
+...........+..+.+|++.||+|.|+++..+++..++..+++++..+ .+...++-++.+++.+..+ ..+.++..
T Consensus 65 G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~S--l~~L~i~R~llGvaEA~~~-A~~syI~~ 141 (511)
T TIGR00806 65 NEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTS--VWHMQLMEVFYSVTMAARI-AYSSYIFS 141 (511)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 45556667778899999999999999999999999999999988888643 4456666677888888888 89999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 505 QFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 505 ~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
.+|++.|+++.|+.+....+|.++++.+.++
T Consensus 142 WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql 172 (511)
T TIGR00806 142 LVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL 172 (511)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998876
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.9e-06 Score=94.26 Aligned_cols=120 Identities=8% Similarity=-0.023 Sum_probs=86.5
Q ss_pred hccCCCCchH---HHHHHHHHHHHHHHHHHHHHHHhh-cCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH
Q psy2962 415 WNTANLGGNI---YLNFIISGMVEIPAYLSSMLTLDR-YGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFF 490 (690)
Q Consensus 415 ~~~~~l~~~~---~~~~~~~~l~~i~~~~~~~~l~dr-~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~ 490 (690)
+..+.++.+. ........+......+++|++.|| +|||+++..+.++.+++.+.+.+.... .....+...+.+++
T Consensus 40 yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~-~~ll~~~~~l~~ig 118 (489)
T PRK10207 40 FFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLK-PDLIFIALGTIAVG 118 (489)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHhc
Confidence 3344555332 222333334445556789999999 999999999999999988887765432 22222334445566
Q ss_pred HHHHHHHHHHHhhcccchH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 491 ITGAYGAVYIFSAEQFPTV--IRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 491 ~~~~~~~~~~~~~e~~p~~--~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
.+...+...+++.|.+|++ .|+.++++.....++|.+++|.+.++
T Consensus 119 ~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~ 165 (489)
T PRK10207 119 NGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPV 165 (489)
T ss_pred cccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 7777778889999999877 45778999999999999999999887
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00022 Score=75.49 Aligned_cols=321 Identities=15% Similarity=0.099 Sum_probs=167.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHHhh
Q psy2962 187 YRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLALE 266 (690)
Q Consensus 187 ~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i~e 266 (690)
-.+.+.-+-.+-.++.-+.+.++.+|+.-+.=+.+..+++.++.++.+++++.+.=+++-.+.+++.|........+..
T Consensus 60 ~t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~- 138 (402)
T PF02487_consen 60 STGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH- 138 (402)
T ss_pred cchHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-
Confidence 3555666666677777778888899887666566777788889999999999999999999999999998888877754
Q ss_pred hcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh--hc--hHHHHHHHHHHHHHHHHHH-HhcCchhHHHhcCCHHHHHHH
Q psy2962 267 MVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH--DW--RHLDILVTLPGLIYLAYWW-FIPESARWLISKGRNEEAKLI 341 (690)
Q Consensus 267 ~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~--~W--r~~~~i~~i~~ll~~~~~~-~lpesp~~l~~~~~~~ea~~~ 341 (690)
.+++ ...+.+..+.+.+.++|+..-..+. ++ |..+++..+..++..+.++ .+|.++.- ...++.++
T Consensus 139 ~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~-~~~~~~~~---- 209 (402)
T PF02487_consen 139 FYGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTN-RPYQESES---- 209 (402)
T ss_pred hcCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhcccccc-CCCcccCC----
Confidence 4443 3466777777777777776555543 33 5566666655555544444 44433210 00000000
Q ss_pred HHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhcc-CcHHHHHHHHHHHHHHHHHHHHHHHh---hcc
Q psy2962 342 IQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFR-HPNLFKKSVIIFFLWFVCSLTYYGLS---WNT 417 (690)
Q Consensus 342 l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~ 417 (690)
..+..++..+.. ....+.....+.++++-++ -+.+.+..+-.+..++.-.....+.. .+.
T Consensus 210 --------~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp 273 (402)
T PF02487_consen 210 --------EDEAEDDLLESE--------TSESKPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFP 273 (402)
T ss_pred --------CCcccccccccc--------cccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCC
Confidence 000000000000 0000000111112221111 11222222222222332222222211 111
Q ss_pred CCCC--chHH-HHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHH
Q psy2962 418 ANLG--GNIY-LNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALL-PLDLNTVSIVLAMMGKFFITG 493 (690)
Q Consensus 418 ~~l~--~~~~-~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~-~~~~~~~~~~~~~l~~~~~~~ 493 (690)
.... .+.| .......++.++++--..+ =|+.+.+.+.+...+..+.+++-... --.+.|..+++++.-|+..++
T Consensus 274 ~~~~~~r~~Y~~Y~~~YQ~GVFISRSS~~~--~rir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa 351 (402)
T PF02487_consen 274 NSFFSPRDQYRWYQLLYQLGVFISRSSLPF--FRIRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGA 351 (402)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhhhhcceee--eehhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhH
Confidence 1111 1222 2222333333333222111 12333333322222222222221111 112355566666667777778
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 494 AYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 494 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
.+.-.+..+.|-.|++.|..++|.....-.+|..++.++.-.
T Consensus 352 ~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~ 393 (402)
T PF02487_consen 352 SYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLP 393 (402)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 888778888888899999999999999999999888887654
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.1e-06 Score=84.14 Aligned_cols=138 Identities=19% Similarity=0.209 Sum_probs=108.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhcc-------ccHHHHHHHHHHHHhhhhhhH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFA-------PDFWTFTACRLIVGASTSGVF 257 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s-------~s~~~l~~~R~l~G~~~g~~~ 257 (690)
+.+...+.++-.+|..+| ++.|.+.|++|++.++++|.+...+|..+...+ .++|.+.+..++.|.+.+...
T Consensus 36 q~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ 114 (250)
T PF06813_consen 36 QSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFN 114 (250)
T ss_pred HHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhh
Confidence 678889999999998875 889999999999999999999999998877552 468888888899999888888
Q ss_pred HHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh-h-h-chHHHHHHHHHHHHHHHHHHHhcC
Q psy2962 258 LVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV-H-D-WRHLDILVTLPGLIYLAYWWFIPE 324 (690)
Q Consensus 258 ~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l-~-~-Wr~~~~i~~i~~ll~~~~~~~lpe 324 (690)
.++.....+.+| ++||.+.++.-...+++..+...+...+ . + -+.+.++...+.++.++..++++.
T Consensus 115 ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~ 183 (250)
T PF06813_consen 115 TASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRP 183 (250)
T ss_pred hHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheec
Confidence 888888888896 6899999999999999998877666555 2 2 334444444445554555555543
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.47 E-value=3e-06 Score=91.61 Aligned_cols=133 Identities=16% Similarity=0.094 Sum_probs=100.7
Q ss_pred ccchhHHHHHHH-HHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhc------cccHHHHHHHHHHHHhhhhhhH
Q psy2962 185 AWYRGTSDAFLM-MGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAF------APDFWTFTACRLIVGASTSGVF 257 (690)
Q Consensus 185 ~~~~gli~s~~~-lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~------s~s~~~l~~~R~l~G~~~g~~~ 257 (690)
..+.|++..... ++..++.++.|++.||+|+|+.+..+.++.++..+.... .++...+....++.+++.+...
T Consensus 242 ~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 321 (390)
T TIGR02718 242 LEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITGITS 321 (390)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHHHH
Confidence 567888877765 467788999999999999999988877665333322211 2344455556666777788888
Q ss_pred HHHHHHHhhhcCC-CcchhhhhHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHH
Q psy2962 258 LVAYVLALEMVGP-SKRIIAGTVIHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLA 317 (690)
Q Consensus 258 ~~~~~~i~e~~~~-~~R~~~~~~~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~ 317 (690)
+.....+.+..++ +++++..++.+....+|..++|.+++.+. ||+..|++.++..++.++
T Consensus 322 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 322 VAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 8888888888876 78999999999999999999999998874 577888877766655443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.45 E-value=4e-06 Score=92.21 Aligned_cols=140 Identities=19% Similarity=0.218 Sum_probs=118.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCc--HHHHHHHHHHHHHHhhhhc--------cccHHHHHHHHHHHHhhhh
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRK--PTFMISILIMDVFGTLAAF--------APDFWTFTACRLIVGASTS 254 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr--~~ll~~~~l~~i~~~~~~~--------s~s~~~l~~~R~l~G~~~g 254 (690)
..+...+.-+..+...+|++++|++.||+|.| ++++++++++.+..+...+ .++.+.+.+.-++.|+..|
T Consensus 316 ~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G 395 (477)
T PF11700_consen 316 TTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMG 395 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhh
Confidence 45666777777888889999999999999999 8999988888776666655 6788889999999999999
Q ss_pred hhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh----hchHHHHHHHHHHHHHHHHHHHhcC
Q psy2962 255 GVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH----DWRHLDILVTLPGLIYLAYWWFIPE 324 (690)
Q Consensus 255 ~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~----~Wr~~~~i~~i~~ll~~~~~~~lpe 324 (690)
+.++...++.+|..|+++.+..+|++.+..-....+||.+-+.+. +-|+.++...++.++.+++.++++.
T Consensus 396 ~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~ 469 (477)
T PF11700_consen 396 GIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDV 469 (477)
T ss_pred hHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999888874 4677777766666666666565553
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.2e-06 Score=91.94 Aligned_cols=114 Identities=16% Similarity=0.075 Sum_probs=83.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhh----hhccccHHHHHHHHHHHHhhhhhhHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTL----AAFAPDFWTFTACRLIVGASTSGVFLVA 260 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~----~~~s~s~~~l~~~R~l~G~~~g~~~~~~ 260 (690)
..+.++....+.++..++.+++|+++||+|||++++.+.++..+.... ....+++..+.+..++.|++.+...+..
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 352 (434)
T PRK15075 273 AADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELWLSFLYGSYNGAM 352 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHhhH
Confidence 345677888888999999999999999999999888765544332211 1123455555555666777777777777
Q ss_pred HHHHhhhcCCCcchhhhhHH-HHHHHHHHHHHHHHHHHh
Q psy2962 261 YVLALEMVGPSKRIIAGTVI-HMFFSIGFLLIAGLAYFV 298 (690)
Q Consensus 261 ~~~i~e~~~~~~R~~~~~~~-~~~~~lG~~l~~~l~~~l 298 (690)
..++.|.+|++.|+...++. +++..++..++|.+.+.+
T Consensus 353 ~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i 391 (434)
T PRK15075 353 VVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWL 391 (434)
T ss_pred HHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHH
Confidence 78899999999999999885 444445566677777766
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.7e-07 Score=97.69 Aligned_cols=139 Identities=17% Similarity=0.243 Sum_probs=127.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccC--CcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFG--RKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYV 262 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~G--rr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~ 262 (690)
+.+.+.+.++..+...+|.++.|+++|+.. ++.+..+++++.+++.+.++++++++.++..-.+.|++.|........
T Consensus 332 ~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~ 411 (509)
T KOG2504|consen 332 SNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPV 411 (509)
T ss_pred hhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999998 566788889999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh----hchHHHHHHHHHHHHHHHHHHHhc
Q psy2962 263 LALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH----DWRHLDILVTLPGLIYLAYWWFIP 323 (690)
Q Consensus 263 ~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~----~Wr~~~~i~~i~~ll~~~~~~~lp 323 (690)
.+.|.++.++-..+.|+...+.+++.+++|++++.+. +|...|+..++..++....+++.|
T Consensus 412 i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 412 ILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred HHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHHhH
Confidence 9999999999999999999999999999999999874 488999999998888877777666
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.3e-05 Score=85.45 Aligned_cols=97 Identities=15% Similarity=0.047 Sum_probs=72.9
Q ss_pred HHHHHHHHhhc-----CChhHH-HHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHH
Q psy2962 439 YLSSMLTLDRY-----GRKNFL-CPCLILSGLCLIVSALLPL-DLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIR 511 (690)
Q Consensus 439 ~~~~~~l~dr~-----grr~~l-~~~~~~~~i~~l~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r 511 (690)
.++.|.++||+ |||+.+ +.+.++.+++.+.+.+.+. ...+......++.+++.+...+...+++.|.+|++.|
T Consensus 38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r 117 (356)
T TIGR00901 38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEEL 117 (356)
T ss_pred HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhh
Confidence 78999999997 888874 5566666666656655533 2233333444445566666667888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 512 NIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 512 ~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+.+.|+......+|.+++|.+.+.
T Consensus 118 ~~~~~~~~~~~~~G~~~~~~l~~~ 141 (356)
T TIGR00901 118 GYGSTIYIVGYRAGMLLSGSLALV 141 (356)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998876
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.1e-05 Score=85.43 Aligned_cols=130 Identities=16% Similarity=0.030 Sum_probs=88.9
Q ss_pred HHHHHHHHhhccCCCCchHHHHHHHHHHH-HHHHHHHHHHHHhhc-----CChh-HHHHHHHHHHHHHHHHHhcCC-Chh
Q psy2962 406 CSLTYYGLSWNTANLGGNIYLNFIISGMV-EIPAYLSSMLTLDRY-----GRKN-FLCPCLILSGLCLIVSALLPL-DLN 477 (690)
Q Consensus 406 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~-~i~~~~~~~~l~dr~-----grr~-~l~~~~~~~~i~~l~~~~~~~-~~~ 477 (690)
..+....++.+.++.|.+......+..+. -.+..++.+.++||+ |||+ .+..+.++.+++...+.+.+. ...
T Consensus 15 ~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~ 94 (402)
T PRK11902 15 LALTSGTLQAWMTVEGLDIQTIGFFSLVGQAYIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAAL 94 (402)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchH
Confidence 34444445555555554433332222111 157788999999999 7765 677777777777777666643 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 478 TVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 478 ~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+...+..++..++.....+...+++.|.+|+++|+.+.++......+|.++++.+.+.
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~ 152 (402)
T PRK11902 95 WPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALW 152 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4344444455566667777889999999999999999999999889999998887765
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.7e-05 Score=86.87 Aligned_cols=119 Identities=15% Similarity=0.091 Sum_probs=83.3
Q ss_pred cCCCCch---HHHHHHHHHHHHHHHHHHHHHHHh----hcCChhHHHHH-HHHHHHHHHHHHhcCCC-----------h-
Q psy2962 417 TANLGGN---IYLNFIISGMVEIPAYLSSMLTLD----RYGRKNFLCPC-LILSGLCLIVSALLPLD-----------L- 476 (690)
Q Consensus 417 ~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~d----r~grr~~l~~~-~~~~~i~~l~~~~~~~~-----------~- 476 (690)
.+.++.+ ......+..+..++..++.|+++| |+|||+.++.. .+...++++++.+.++. .
T Consensus 31 l~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~ 110 (477)
T TIGR01301 31 VQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTK 110 (477)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccch
Confidence 3445544 334455566778888999999999 59999988775 45555555555543321 0
Q ss_pred h---HHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 477 N---TVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIR--NIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 477 ~---~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r--~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
. +..++...+..++.....+...++++|+.|++.| +.+.++.+.+..+|+++++.+.++
T Consensus 111 ~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~ 174 (477)
T TIGR01301 111 PRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAY 174 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1223333444567777778889999999998865 578999999999999999998875
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=98.42 E-value=3e-06 Score=95.51 Aligned_cols=108 Identities=21% Similarity=0.231 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2962 425 YLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAE 504 (690)
Q Consensus 425 ~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e 504 (690)
.+...+..++.++|.++.|.++||+|||+++..++++..++.+..++.++ .+..+++-++.+++.++...+.+.+..|
T Consensus 121 ~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~--~~~~~~~Rfl~G~~~~~~~~~~~~~~~E 198 (521)
T KOG0255|consen 121 ALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPN--YWMFLIFRFLSGFFGSGPLTVGFGLVAE 198 (521)
T ss_pred HHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCc--HHHHHHHHHHHHhhccchhHHhHhhhee
Confidence 34555666778899999999999999999999999999999988877754 5667778888999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 505 QFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 505 ~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
.++++.|+.+..+ ......++.++|...++
T Consensus 199 ~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~ 228 (521)
T KOG0255|consen 199 IVSPKQRGLALTL-GGFFFVGGLMLPAGAAY 228 (521)
T ss_pred ecCcchhhHHHHH-HHHHHHHHHHHHHHHHH
Confidence 9999999999999 77888888888777766
|
|
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.1e-05 Score=73.30 Aligned_cols=290 Identities=13% Similarity=0.082 Sum_probs=154.3
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHH-
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVL- 263 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~- 263 (690)
+.++|.+.-..+...++...+.|.++|+-|||+.-+.-.+..++++ +.-.++.|-.++++|.+-|++.+..+.+-.++
T Consensus 71 kG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWl 149 (454)
T KOG4332|consen 71 KGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGIATSLLFSAFESWL 149 (454)
T ss_pred CCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhHHHHHHHHHHHHHH
Confidence 4566666666666677778889999999999996555444444433 34468899999999999999999999888775
Q ss_pred HhhhcCCCcchhhhhHHHHHHH----HHH----HHHHHHHHHhhhchH-----HHHHHHHHHHHHHHHHHHhcCchhHHH
Q psy2962 264 ALEMVGPSKRIIAGTVIHMFFS----IGF----LLIAGLAYFVHDWRH-----LDILVTLPGLIYLAYWWFIPESARWLI 330 (690)
Q Consensus 264 i~e~~~~~~R~~~~~~~~~~~~----lG~----~l~~~l~~~l~~Wr~-----~~~i~~i~~ll~~~~~~~lpesp~~l~ 330 (690)
+.|-. ++|+.-.-+....++ +|. +++.+.+..+.+|-. +|-..+ +++.+.....+ ..|-.
T Consensus 150 iaEHn--ekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAa--cfLaigmAvil---~~W~E 222 (454)
T KOG4332|consen 150 IAEHN--EKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAA--CFLAIGMAVIL---SSWSE 222 (454)
T ss_pred HHHhh--hccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHH--HHHHHHHHHHH---hhhhh
Confidence 45543 345443333332222 222 233333333344421 222221 11111111111 12433
Q ss_pred hcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHHH
Q psy2962 331 SKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTY 410 (690)
Q Consensus 331 ~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 410 (690)
.-++..|.+..+.+.+. ..+.+..++++ .+...+....-...|
T Consensus 223 Nygdps~~kdlltqf~g----------------------------------aa~aiaSD~ki---~LLG~iqsLFE~smy 265 (454)
T KOG4332|consen 223 NYGDPSENKDLLTQFKG----------------------------------AARAIASDEKI---ALLGAIQSLFEGSMY 265 (454)
T ss_pred ccCChhhhHHHHHHhhH----------------------------------hHHHHhcchHH---HHHHHHHHHHhhhhh
Confidence 34454444444433321 11222333322 222222222222222
Q ss_pred HHHhhccCCCC-----chHHHHHHHHHHHHHHHHHHHHHHHhhcCC--hhHHHHHHHHHHHHHHHHHhc----C-CChhH
Q psy2962 411 YGLSWNTANLG-----GNIYLNFIISGMVEIPAYLSSMLTLDRYGR--KNFLCPCLILSGLCLIVSALL----P-LDLNT 478 (690)
Q Consensus 411 ~~~~~~~~~l~-----~~~~~~~~~~~l~~i~~~~~~~~l~dr~gr--r~~l~~~~~~~~i~~l~~~~~----~-~~~~~ 478 (690)
....++...+. ..-+..+....+..+.|+-+...+..|-.. ...+.+.+.+.++.+.+.... | ...+.
T Consensus 266 tFVFLWTPaLspn~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~ 345 (454)
T KOG4332|consen 266 TFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPS 345 (454)
T ss_pred eeeeeecccCCCCcccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCch
Confidence 22222233332 233455555556666676666666554332 234445555544444433332 2 12334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHH
Q psy2962 479 VSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGS 519 (690)
Q Consensus 479 ~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~ 519 (690)
..++..++.-.+.+..+|...-+-.+..|.+.|++.+-+..
T Consensus 346 ~s~i~F~~~E~cvGlfwPSimkmRsqyIPEearstimNfFR 386 (454)
T KOG4332|consen 346 ESLIGFCLFEACVGLFWPSIMKMRSQYIPEEARSTIMNFFR 386 (454)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHhhCCHHHHhhhhhhee
Confidence 45566677778889999999999999999999987665443
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.4e-05 Score=84.73 Aligned_cols=122 Identities=12% Similarity=-0.071 Sum_probs=93.7
Q ss_pred hhccCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHh-cCCChhHHHHHHHHHHHH
Q psy2962 414 SWNTANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSAL-LPLDLNTVSIVLAMMGKF 489 (690)
Q Consensus 414 ~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~-~~~~~~~~~~~~~~l~~~ 489 (690)
+...+.++.+ ..+......++..++.++.|.+.||+|||+++..+..+.+++.+++.. ....+.+..++..++.++
T Consensus 50 p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~ 129 (438)
T PRK10133 50 PQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAA 129 (438)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3334555533 445556677888899999999999999999999999999888876532 112334555666677788
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 490 FITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 490 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+.+........++.+..|.+.|+..+++.+....+|..++|.+.+.
T Consensus 130 g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~ 175 (438)
T PRK10133 130 GLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_pred HHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888887777778999999999999999988764
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=8.6e-06 Score=90.53 Aligned_cols=114 Identities=11% Similarity=0.056 Sum_probs=91.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhc-----cccHHHHHHHHHHHHhhhhhhHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAF-----APDFWTFTACRLIVGASTSGVFLV 259 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~-----s~s~~~l~~~R~l~G~~~g~~~~~ 259 (690)
....+++.++..++.+++.+++++++||+|+|+.++++.++.+++.+...+ ..+.+.+++.-++.|++.+...+.
T Consensus 265 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~ 344 (473)
T PRK10429 265 ADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVL 344 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777889999999999999999999999888877766555432 345677778888999999999999
Q ss_pred HHHHHhhhcC-------CCcchhhhhHHHHHHHHHHHHHHHHHHHh
Q psy2962 260 AYVLALEMVG-------PSKRIIAGTVIHMFFSIGFLLIAGLAYFV 298 (690)
Q Consensus 260 ~~~~i~e~~~-------~~~R~~~~~~~~~~~~lG~~l~~~l~~~l 298 (690)
..+++.|..+ .+..|...+......-+|..+++.+.+++
T Consensus 345 ~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~ 390 (473)
T PRK10429 345 QVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVV 390 (473)
T ss_pred HHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999965 33346678888888888888888777665
|
|
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.1e-05 Score=88.23 Aligned_cols=140 Identities=19% Similarity=0.117 Sum_probs=116.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2962 425 YLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAE 504 (690)
Q Consensus 425 ~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e 504 (690)
.........+.+++.+.++++.||+|-|+++..+.++.+++.++.++......+..+++-++-|++.+..++....+.+.
T Consensus 76 ~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~ 155 (466)
T KOG2532|consen 76 GLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAK 155 (466)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeee
Confidence 34555666778899999999999999999999999999999999888765545556667788889999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCccccccccccccchhhccccCCCcchhhccccchhhhhhh
Q psy2962 505 QFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVILIDQV 584 (690)
Q Consensus 505 ~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (690)
-.|++.|++..++......+|.+++-.+.|++. .
T Consensus 156 W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc------~---------------------------------------- 189 (466)
T KOG2532|consen 156 WAPPNERSTFIAILTAGSQLGTIITMPVSGLLC------E---------------------------------------- 189 (466)
T ss_pred ECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh------c----------------------------------------
Confidence 999999999999999999999998777777521 1
Q ss_pred hhhhhcccchhhHHHHHHHHHHHHHHhhhc
Q psy2962 585 FLLQVEIWLPLPFLMFGVLSLTAGILSLIL 614 (690)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l 614 (690)
...+....|++.|+++++..++.+++
T Consensus 190 ----s~~GW~sifY~~g~~g~i~~~~w~~~ 215 (466)
T KOG2532|consen 190 ----SSLGWPSIFYVFGIVGLIWFILWFLF 215 (466)
T ss_pred ----cCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 13677889999999999888877643
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.7e-06 Score=88.70 Aligned_cols=144 Identities=20% Similarity=0.135 Sum_probs=122.2
Q ss_pred ceeeeCCccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhH
Q psy2962 178 WSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVF 257 (690)
Q Consensus 178 ~~LvC~~~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~ 257 (690)
++|. +.+..++..+..+..++|++++|+|.||+|.|+++..++++..+.++..-+...-..+.++-.+.|++.|+.+
T Consensus 283 ~gls---~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~q 359 (438)
T COG2270 283 LGLS---STELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQ 359 (438)
T ss_pred cCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHH
Confidence 5554 6777888888888899999999999999999999999999999999988888888888888999999999999
Q ss_pred HHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh----hchHHHHHHHHHHHHHHHHHHHhcC
Q psy2962 258 LVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH----DWRHLDILVTLPGLIYLAYWWFIPE 324 (690)
Q Consensus 258 ~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~----~Wr~~~~i~~i~~ll~~~~~~~lpe 324 (690)
..+-++..+.+|+++-++.+|++++..-.+..++|.+-..+. +-|.-+....++.++.++..+.+|+
T Consensus 360 A~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~ 430 (438)
T COG2270 360 ASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKV 430 (438)
T ss_pred HHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecC
Confidence 999999999999999999999999999999999999888774 4566555555554444555555554
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00095 Score=72.88 Aligned_cols=248 Identities=14% Similarity=0.155 Sum_probs=143.5
Q ss_pred cchhHHHHHHHHHHHHH-HHHHHhhccccCCcHHHHHHHHHHHHHHhhhhcc----c-----------------------
Q psy2962 186 WYRGTSDAFLMMGVLLG-SLIFGDISDRFGRKPTFMISILIMDVFGTLAAFA----P----------------------- 237 (690)
Q Consensus 186 ~~~gli~s~~~lg~~ig-~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s----~----------------------- 237 (690)
..+.++-+...+..++. .++.+++++|++|++++-+....+.+..+++++. +
T Consensus 43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~ 122 (472)
T TIGR00769 43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF 122 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence 56778888777776666 8999999999999998887776666666555543 1
Q ss_pred ----cHHHHHHHHHHHHhhhhhhHH-HHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh-----------hc
Q psy2962 238 ----DFWTFTACRLIVGASTSGVFL-VAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH-----------DW 301 (690)
Q Consensus 238 ----s~~~l~~~R~l~G~~~g~~~~-~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~-----------~W 301 (690)
+.|...+.-+...+-...... .-..+++|.+..++-.|..++++++.++|.++++.+..++. .|
T Consensus 123 i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~ 202 (472)
T TIGR00769 123 IAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGW 202 (472)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChH
Confidence 122333333444444444444 66788999999999999999999999999999998877754 23
Q ss_pred h----HHHHHHHHHHHHHHHHHHHhcCchhHHHhcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcC
Q psy2962 302 R----HLDILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQND 377 (690)
Q Consensus 302 r----~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (690)
. .++.+.++.+++.+.+.+++.+ +...+.+.. +.+ ..+++++++.
T Consensus 203 ~~~~~~l~~i~~~~~~~~~~~~~~l~~---~~~~~~~~~-----------------~~~-----------~~~~k~k~k~ 251 (472)
T TIGR00769 203 HVSLKNLMVIVICSGLAIILLYWWVNR---NVLTDPRSY-----------------NPA-----------LKEKKVKPKM 251 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh---cccCCcccc-----------------chh-----------hccccCCCCC
Confidence 2 2333333333333333333311 000000000 000 0000011111
Q ss_pred CCCccchhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCC-C-c---hH--HHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy2962 378 GPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNTANL-G-G---NI--YLNFIISGMVEIPAYLSSMLTLDRYG 450 (690)
Q Consensus 378 ~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l-~-~---~~--~~~~~~~~l~~i~~~~~~~~l~dr~g 450 (690)
....+++.++|+|-++...+...+...+.++.++...-..... . . +. .......++..+...++.+.+.+|+|
T Consensus 252 ~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~G 331 (472)
T TIGR00769 252 STMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYG 331 (472)
T ss_pred CHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1234567788998777776666666666666665432211111 1 1 11 12233445555566666789999999
Q ss_pred ChhHHHHHHHHHHH
Q psy2962 451 RKNFLCPCLILSGL 464 (690)
Q Consensus 451 rr~~l~~~~~~~~i 464 (690)
-+....+.-++..+
T Consensus 332 w~~~a~i~Pii~li 345 (472)
T TIGR00769 332 WLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHHHHH
Confidence 88766655444433
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.3e-06 Score=98.04 Aligned_cols=111 Identities=11% Similarity=-0.032 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcC----------------------------C--
Q psy2962 425 YLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLP----------------------------L-- 474 (690)
Q Consensus 425 ~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~----------------------------~-- 474 (690)
++......++.+++.++.+++.||.+||+.+.++.++.+++.++.++.+ .
T Consensus 71 G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~ 150 (633)
T TIGR00805 71 GLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLT 150 (633)
T ss_pred eeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCC
Confidence 3444556677788889999999999999999999999999988876532 0
Q ss_pred ------------------C-hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 475 ------------------D-LNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 475 ------------------~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
. .....++.-++.+++.+..++...+++.|.+|++.|+...|+......+|.++++.+.++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~ 230 (633)
T TIGR00805 151 QALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSF 230 (633)
T ss_pred CCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 0 112334455677777788888889999999999999999999999999999999999876
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.8e-05 Score=87.24 Aligned_cols=111 Identities=14% Similarity=0.114 Sum_probs=91.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccc--cHHHHHHHHHHHHhhhhhhHHHHHHHHh
Q psy2962 188 RGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAP--DFWTFTACRLIVGASTSGVFLVAYVLAL 265 (690)
Q Consensus 188 ~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~--s~~~l~~~R~l~G~~~g~~~~~~~~~i~ 265 (690)
.++......++.+++.++.++++||+|+|+++.++.++.+++.++..+.+ +++.+.+..++.|+|.+...+...++..
T Consensus 266 ~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~ 345 (448)
T PRK09848 266 TVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQGVTMTVMWALEA 345 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33434444677888999999999999999999999998888887777654 6777778888999999999999999999
Q ss_pred hhcCCC-------cchhhhhHHHHHHHHHHHHHHHHHHHh
Q psy2962 266 EMVGPS-------KRIIAGTVIHMFFSIGFLLIAGLAYFV 298 (690)
Q Consensus 266 e~~~~~-------~R~~~~~~~~~~~~lG~~l~~~l~~~l 298 (690)
|..+.+ ++|...++.+....+|..+++.+.+.+
T Consensus 346 ~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~ 385 (448)
T PRK09848 346 DTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFI 385 (448)
T ss_pred HhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988754 358889999999999999988877654
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00079 Score=72.63 Aligned_cols=109 Identities=12% Similarity=0.011 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHH---HHhcCCCh-----hHHHHHHHHHHHHHHHHHHHH
Q psy2962 426 LNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIV---SALLPLDL-----NTVSIVLAMMGKFFITGAYGA 497 (690)
Q Consensus 426 ~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~---~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~ 497 (690)
..-.+.++.++.|.++..++.+|+|..+.-.++.....++..+ ..+.+... ....+...++..+|.-+.=-.
T Consensus 297 i~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~ 376 (432)
T PF06963_consen 297 IFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLA 376 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHH
Confidence 3344566778899999999999999887776666544433322 22233321 122333344455555555557
Q ss_pred HHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 498 VYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSV 534 (690)
Q Consensus 498 ~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~ 534 (690)
..-+..|..|++.||+..|+-+...++...+.-.+.-
T Consensus 377 ~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~i 413 (432)
T PF06963_consen 377 VTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTI 413 (432)
T ss_pred HHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 7888999999999999999999999988877655543
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.7e-05 Score=85.70 Aligned_cols=115 Identities=15% Similarity=0.059 Sum_probs=79.6
Q ss_pred cCCCCch--HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Q psy2962 417 TANLGGN--IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGA 494 (690)
Q Consensus 417 ~~~l~~~--~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~ 494 (690)
..++|.+ ..+......+...++..+.|.++|.+|||+.++.+.++..++.++....++ .-..+....+.+++.+..
T Consensus 71 ~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~--~~~~iag~~l~GvgaG~~ 148 (599)
T PF06609_consen 71 NADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQN--MNTFIAGMVLYGVGAGVQ 148 (599)
T ss_pred HHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCc--HHHHHHHHHHHHHhhHHH
Confidence 3445532 334444556777888899999999999999999999999999988876654 223445555556664444
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 495 YGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSV 534 (690)
Q Consensus 495 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~ 534 (690)
. .....++|+.|.+.|..+.++.....-+...++|.+..
T Consensus 149 ~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~ 187 (599)
T PF06609_consen 149 E-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQ 187 (599)
T ss_pred H-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHH
Confidence 3 45666899999999988777666544444445565554
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.6e-05 Score=87.53 Aligned_cols=113 Identities=12% Similarity=0.171 Sum_probs=89.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhc--cccHHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2962 186 WYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAF--APDFWTFTACRLIVGASTSGVFLVAYVL 263 (690)
Q Consensus 186 ~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~--s~s~~~l~~~R~l~G~~~g~~~~~~~~~ 263 (690)
...+.+.....++.+++.+++++++||+|+|+.+.++.++.++..+...+ .++.+.+++..++.|++.+...+...++
T Consensus 264 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am 343 (444)
T PRK09669 264 DLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSM 343 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777888899999999999999999999888766654443332 3567778888899999999999999999
Q ss_pred HhhhcC-------CCcchhhhhHHHHHHHHHHHHHHHHHHHh
Q psy2962 264 ALEMVG-------PSKRIIAGTVIHMFFSIGFLLIAGLAYFV 298 (690)
Q Consensus 264 i~e~~~-------~~~R~~~~~~~~~~~~lG~~l~~~l~~~l 298 (690)
++|..+ .+..|...+....+..+|..+++.+++.+
T Consensus 344 ~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~l 385 (444)
T PRK09669 344 FSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWI 385 (444)
T ss_pred HHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999885 22346677888888889999988888765
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.5e-05 Score=89.62 Aligned_cols=108 Identities=23% Similarity=0.171 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2962 425 YLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAE 504 (690)
Q Consensus 425 ~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e 504 (690)
.+......++..++.++.|+++|++|||+.+..+.++..++.++..+.++ .+...+.-++.+++.++...+...|.+|
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~--~~~l~~GR~l~G~g~G~~~~~~piy~sE 169 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPS--WYQLIVGRILTGLGVGGASVLAPVYISE 169 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHhccchhhhhhcchhhHhh
Confidence 46667777888999999999999999999999999999999999888763 5566677788889999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 505 QFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 505 ~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+.|++.||...+..+....+|..++ ++.+.
T Consensus 170 iap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~ 199 (513)
T KOG0254|consen 170 IAPAHIRGTLVSLYQLFITIGILLG-YCINY 199 (513)
T ss_pred cCChhhhHHHHHHHHHHHHHHHHHH-HHHhh
Confidence 9999999999999999999888877 44443
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00019 Score=81.87 Aligned_cols=136 Identities=12% Similarity=-0.004 Sum_probs=104.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccc-cCCcHHHHHHHHHHHHHHhhhhcccc--------HHHHHHHHHHHHhhhhh
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDR-FGRKPTFMISILIMDVFGTLAAFAPD--------FWTFTACRLIVGASTSG 255 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr-~Grr~~ll~~~~l~~i~~~~~~~s~s--------~~~l~~~R~l~G~~~g~ 255 (690)
+.....+...+....-+..+++|+++|+ +||++.++++.++..+|.++.+++.. ....+++-.+.++|.|+
T Consensus 22 ~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~Gg 101 (654)
T TIGR00926 22 ESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGG 101 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccc
Confidence 3445555666666666777899999997 59999999999999999888776421 23466778888899999
Q ss_pred hHHHHHHHHhhhcCCCc---chhhhhHHHHHHHHHHHHHHHHHHHhh----------hchHHHHHHHHHHHHHHHHHH
Q psy2962 256 VFLVAYVLALEMVGPSK---RIIAGTVIHMFFSIGFLLIAGLAYFVH----------DWRHLDILVTLPGLIYLAYWW 320 (690)
Q Consensus 256 ~~~~~~~~i~e~~~~~~---R~~~~~~~~~~~~lG~~l~~~l~~~l~----------~Wr~~~~i~~i~~ll~~~~~~ 320 (690)
+-+...+...|.+++++ |.....++..+.++|.++++.+..++. +|...|.+.++..++.++.++
T Consensus 102 iKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 102 IKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFM 179 (654)
T ss_pred cccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999997653 566778888888999998888777764 477888888777666654443
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.2e-06 Score=87.00 Aligned_cols=114 Identities=15% Similarity=0.099 Sum_probs=91.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcccc-CCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRF-GRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVL 263 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~-Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~ 263 (690)
..+.+++.+++.++.++++++.|+++||+ +||+.+.++.++.+++.++..+.++..... .-++.|++.+..++.....
T Consensus 231 ~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g~~~g~~~~~~~~~ 309 (355)
T TIGR00896 231 AATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVLGLGQGGAFPLALTL 309 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHhhhhHhHHHHHH
Confidence 46789999999999999999999999999 567777788888888877777765543332 4578899999999888777
Q ss_pred HhhhcC-CCcchhhhhHHHHHHHHHHHHHHHHHHHhh
Q psy2962 264 ALEMVG-PSKRIIAGTVIHMFFSIGFLLIAGLAYFVH 299 (690)
Q Consensus 264 i~e~~~-~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~ 299 (690)
+.+..+ +++++...++.+....+|.+++|.+++.+.
T Consensus 310 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~ 346 (355)
T TIGR00896 310 IGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLH 346 (355)
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766555 456788888888888888889998888774
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00062 Score=74.13 Aligned_cols=59 Identities=15% Similarity=0.027 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 476 LNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSV 534 (690)
Q Consensus 476 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~ 534 (690)
+.+..++..++.++..+...+....+..+..+++.|..+..+...+-.+|-.+|..+..
T Consensus 371 ~d~~~~~~~~l~gltnGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~ 429 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF 429 (437)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777788888888889999999999999999888888888888888877654
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.3e-06 Score=86.87 Aligned_cols=128 Identities=23% Similarity=0.218 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCcchhh
Q psy2962 197 MGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIA 276 (690)
Q Consensus 197 lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~ 276 (690)
+.-.-|.++.+++.||+|||+.+..+++++++..++.....+-..+.+.-|..-+...+.+.+.++|..|++|.+-|+..
T Consensus 392 laefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatg 471 (528)
T KOG0253|consen 392 LAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATG 471 (528)
T ss_pred HhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcc
Confidence 34446788999999999999999999999999999887766544444444444445566678889999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh-hchHHHHHHHHHHHHHHHHHHHhcC
Q psy2962 277 GTVIHMFFSIGFLLIAGLAYFVH-DWRHLDILVTLPGLIYLAYWWFIPE 324 (690)
Q Consensus 277 ~~~~~~~~~lG~~l~~~l~~~l~-~Wr~~~~i~~i~~ll~~~~~~~lpe 324 (690)
.|.-....-+|.++.|.++.... .-.....+.+...++..++.+++|-
T Consensus 472 vGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffPi 520 (528)
T KOG0253|consen 472 VGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFPI 520 (528)
T ss_pred hhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeeee
Confidence 99999999999999999993331 2233555666666666667777763
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.6e-05 Score=81.45 Aligned_cols=119 Identities=13% Similarity=0.121 Sum_probs=94.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
+.+.++..+.+..+.++|.++.+++.||+|+|+++.++.++..++.++....++...+ .+-++.|++.+..+|...+..
T Consensus 177 ~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a 255 (310)
T TIGR01272 177 EDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSLA 255 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999988888888887766665554333 456689999999999999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh---hchHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH---DWRHLDI 306 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~---~Wr~~~~ 306 (690)
.+..+++ .+.+.++. ....+|.++.|.+.+.+. +.+..++
T Consensus 256 ~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~ 298 (310)
T TIGR01272 256 LNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFA 298 (310)
T ss_pred Hhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence 9988754 45566665 456688899998777764 3455554
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=98.06 E-value=8.3e-05 Score=81.74 Aligned_cols=149 Identities=21% Similarity=0.172 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2962 424 IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSA 503 (690)
Q Consensus 424 ~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 503 (690)
......+..++.+++.+.++.+.||++-.+.+....++.++..++..... +.+..+++-++.+++.++.+|....+..
T Consensus 83 l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~--s~~~~ialr~llGl~es~~wP~~~~~lg 160 (495)
T KOG2533|consen 83 LGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVH--SFPGLIALRFLLGLFESGGWPGVVAILG 160 (495)
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 44556677788899999999999999966666555555554444433332 3455677778888999999999999999
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCccccccccccccchhhccccCCCcchhhccccchhhhhh
Q psy2962 504 EQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVILIDQ 583 (690)
Q Consensus 504 e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (690)
.-|.++.|+.-+|+.++...+|+++++++...+. . ..|.
T Consensus 161 ~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~------~----------------------------~~~~------- 199 (495)
T KOG2533|consen 161 NWYGKSERGLRMGIWYASASLGNIFGGLIAYGVF------K----------------------------LNGS------- 199 (495)
T ss_pred hhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhh------h----------------------------hcCC-------
Confidence 9999999999999999999999999998875410 0 0000
Q ss_pred hhhhhhcccchhhHHHHHHHHHHHHHHhh-hccCCCC
Q psy2962 584 VFLLQVEIWLPLPFLMFGVLSLTAGILSL-ILPETHH 619 (690)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~lpet~~ 619 (690)
....++.+.|++-|+++++.+++++ ++|+...
T Consensus 200 ----~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 200 ----GGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred ----CCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 0045677899999999999998886 7886544
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.7e-05 Score=85.33 Aligned_cols=114 Identities=18% Similarity=0.326 Sum_probs=101.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccc--cHHHHHHHHHHHHhhhhhhHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAP--DFWTFTACRLIVGASTSGVFLVAYV 262 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~--s~~~l~~~R~l~G~~~g~~~~~~~~ 262 (690)
+...+.+..+..++..++.+++++++||+|+|+++..+.++.+++.++..+.+ +.+.+++.-++.|++.+...+...+
T Consensus 259 ~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a 338 (428)
T PF13347_consen 259 EGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWA 338 (428)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhccccccccc
Confidence 35678888899999999999999999999999999999999999999988876 9999999999999999999999999
Q ss_pred HHhhhcCC-------CcchhhhhHHHHHHHHHHHHHHHHHHHh
Q psy2962 263 LALEMVGP-------SKRIIAGTVIHMFFSIGFLLIAGLAYFV 298 (690)
Q Consensus 263 ~i~e~~~~-------~~R~~~~~~~~~~~~lG~~l~~~l~~~l 298 (690)
+++|..+. ++.|...+......-+|..+++.+.+.+
T Consensus 339 ~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~ 381 (428)
T PF13347_consen 339 MLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLL 381 (428)
T ss_pred ccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 99998873 3347888888888888888888776665
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.9e-05 Score=86.00 Aligned_cols=116 Identities=13% Similarity=0.103 Sum_probs=102.2
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhc----------cccHHHHHHHHHHHHhhh
Q psy2962 184 KAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAF----------APDFWTFTACRLIVGAST 253 (690)
Q Consensus 184 ~~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~----------s~s~~~l~~~R~l~G~~~ 253 (690)
++...|++.+...++.+++....+.+.+|++.|+++.++.++.+++.+.... .++.+.++..-++.+++.
T Consensus 286 s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~ 365 (468)
T TIGR00788 286 GPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLA 365 (468)
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHH
Confidence 3788999999999999999999999999999999999999999998866532 144445667788999999
Q ss_pred hhhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh
Q psy2962 254 SGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH 299 (690)
Q Consensus 254 g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~ 299 (690)
+..+.+..+++.+.+|+++++...++.....++|..+++.+++.+.
T Consensus 366 g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~ 411 (468)
T TIGR00788 366 QLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLM 411 (468)
T ss_pred HHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888873
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.04 E-value=9.1e-05 Score=78.89 Aligned_cols=137 Identities=15% Similarity=0.162 Sum_probs=116.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
....|.+.++.-+.-.+...+..++.+|+|.|+.++++.++..+=.++++++++.+.+.+.+.+.|+..+....+...|+
T Consensus 258 ~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI 337 (412)
T PF01306_consen 258 NQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYI 337 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35578888888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcchhhhhH-HHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTV-IHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAYWWF 321 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~-~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~~~~ 321 (690)
.+.+|+|-.++...+ .+.+..+|.++.+.+++.+. |.+..|++.+.+.++..+..++
T Consensus 338 ~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f 398 (412)
T PF01306_consen 338 TAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAF 398 (412)
T ss_dssp HHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHhee
Confidence 999998887777666 57889999999888888874 5778898888887766555444
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00012 Score=78.99 Aligned_cols=134 Identities=16% Similarity=0.163 Sum_probs=106.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhcc-ccHHHHHH----HHHHHHhhhhhhHHHHH
Q psy2962 187 YRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFA-PDFWTFTA----CRLIVGASTSGVFLVAY 261 (690)
Q Consensus 187 ~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s-~s~~~l~~----~R~l~G~~~g~~~~~~~ 261 (690)
..+.+.++..++=+..-...+++..|+|.|++++++.+..++=..+.++. ++.+...+ ...++|+..+..+.++.
T Consensus 244 ~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~ 323 (400)
T PF03825_consen 244 TIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAASV 323 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 44555566666666777889999999999999999999999998888877 55444333 35579999999999999
Q ss_pred HHHhhhcCCCcchhhhhHHHH-HHHHHHHHHHHHHHHhhh---------chHHHHHHHHHHHHHHHHHH
Q psy2962 262 VLALEMVGPSKRIIAGTVIHM-FFSIGFLLIAGLAYFVHD---------WRHLDILVTLPGLIYLAYWW 320 (690)
Q Consensus 262 ~~i~e~~~~~~R~~~~~~~~~-~~~lG~~l~~~l~~~l~~---------Wr~~~~i~~i~~ll~~~~~~ 320 (690)
.++.+.+|++.|+++.+++.. ..++|..++..+++.+.+ |...+.+.++..++..++++
T Consensus 324 ~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~ 392 (400)
T PF03825_consen 324 RYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFV 392 (400)
T ss_pred HHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999776 568999999999998842 55566666666655554443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.02 E-value=8.8e-08 Score=105.76 Aligned_cols=109 Identities=25% Similarity=0.132 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2962 426 LNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLD-LNTVSIVLAMMGKFFITGAYGAVYIFSAE 504 (690)
Q Consensus 426 ~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~e 504 (690)
.......++.++|.++.|++.||+|||+.+..+.++..++.++..+.+.. +.+...+.-++.+++.++.......++.|
T Consensus 50 ~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E 129 (451)
T PF00083_consen 50 LLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISE 129 (451)
T ss_pred HHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34455567778999999999999999999999999999998888877622 34455556677788899999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 505 QFPTVIRNIGIGAGSTFARVGGIFASYTSV 534 (690)
Q Consensus 505 ~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~ 534 (690)
..|++.|+...++.+....+|.+++..+..
T Consensus 130 ~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~ 159 (451)
T PF00083_consen 130 IAPPKHRGFLSSLFQLFWALGILLASLIGY 159 (451)
T ss_pred cccccccccccccccccccccccccccccc
Confidence 999999999999999888888877776643
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00021 Score=79.10 Aligned_cols=114 Identities=15% Similarity=0.121 Sum_probs=77.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhcccc--HHHHHHHHHHHHhhhhhhHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPD--FWTFTACRLIVGASTSGVFLVAYV 262 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s--~~~l~~~R~l~G~~~g~~~~~~~~ 262 (690)
+...+.+.+.+.++.+++.+++++++||+|+|+++..+.++.++..++..+.++ ...+++.-++.|++.+...+...+
T Consensus 262 ~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~ 341 (460)
T PRK11462 262 PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWV 341 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566778888999999999999999999999887665555444444433322 334445556778887777777777
Q ss_pred HHhhhcC-------CCcchhhhhHHHHHHHHHHHHHHHHHHHh
Q psy2962 263 LALEMVG-------PSKRIIAGTVIHMFFSIGFLLIAGLAYFV 298 (690)
Q Consensus 263 ~i~e~~~-------~~~R~~~~~~~~~~~~lG~~l~~~l~~~l 298 (690)
++.|..+ .+..|...+......-+|..+++.+++.+
T Consensus 342 m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~i 384 (460)
T PRK11462 342 MMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWM 384 (460)
T ss_pred HHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777766 22235555666677777777777666554
|
|
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.4e-05 Score=82.22 Aligned_cols=104 Identities=20% Similarity=0.279 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHhhccc----cCCcH-HHHHHHHHHHHHHhhhhccccHHH-----------------HHHHHHHHHhh
Q psy2962 195 LMMGVLLGSLIFGDISDR----FGRKP-TFMISILIMDVFGTLAAFAPDFWT-----------------FTACRLIVGAS 252 (690)
Q Consensus 195 ~~lg~~ig~~~~G~lsDr----~Grr~-~ll~~~~l~~i~~~~~~~s~s~~~-----------------l~~~R~l~G~~ 252 (690)
-.+..++.+++.|..+|| ||||| .+..+.++..++.++..++.++.. ++++--+.=++
T Consensus 76 gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A 155 (498)
T KOG0637|consen 76 GPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVA 155 (498)
T ss_pred cccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhh
Confidence 344455778999999995 89866 455556666777777777655332 34444445556
Q ss_pred hhhhHHHHHHHHhhhcCCCcchh-hhhHHHHHHHHHHHHHHHHHHHh
Q psy2962 253 TSGVFLVAYVLALEMVGPSKRII-AGTVIHMFFSIGFLLIAGLAYFV 298 (690)
Q Consensus 253 ~g~~~~~~~~~i~e~~~~~~R~~-~~~~~~~~~~lG~~l~~~l~~~l 298 (690)
.......+-+++.|...++++.+ +++.+..+.++|..+|..++.+.
T Consensus 156 ~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 156 NNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred hhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence 66788889999999998877766 99999999999999988888755
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0002 Score=77.19 Aligned_cols=121 Identities=19% Similarity=0.298 Sum_probs=95.4
Q ss_pred cceeeeCCccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccc--cHHHHHHHHHHHHhhhh
Q psy2962 177 MWSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAP--DFWTFTACRLIVGASTS 254 (690)
Q Consensus 177 ~~~LvC~~~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~--s~~~l~~~R~l~G~~~g 254 (690)
++++. +++....+.......+.+++.+++..+++|+|+|+++.++.++.+++.++.-+.+ +.+.+++..++.++|.+
T Consensus 264 ~y~lg-~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~ 342 (467)
T COG2211 264 TYVLG-DPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTG 342 (467)
T ss_pred EEEcC-ChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhh
Confidence 35543 2345566777777777788899999999999999999999999999999998866 78889999999999999
Q ss_pred hhHHHHHHHHhhhcCCC-------cchhhhhHHHHHHHHHHHHHHHHHHHh
Q psy2962 255 GVFLVAYVLALEMVGPS-------KRIIAGTVIHMFFSIGFLLIAGLAYFV 298 (690)
Q Consensus 255 ~~~~~~~~~i~e~~~~~-------~R~~~~~~~~~~~~lG~~l~~~l~~~l 298 (690)
...+...++++|..+-. .-|...+....+.=+|..++..+.++.
T Consensus 343 ~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~ 393 (467)
T COG2211 343 IANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWI 393 (467)
T ss_pred ccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988766432 226667777777777777766555544
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=97.85 E-value=7.8e-05 Score=73.24 Aligned_cols=136 Identities=20% Similarity=0.203 Sum_probs=96.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHH-hhhhccccHHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFG-TLAAFAPDFWTFTACRLIVGASTSGVFLVAYVL 263 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~-~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~ 263 (690)
+...+-+.|....-.++.+++.|.++||+|++...+.+..+..+.+ .+..| +++.=.++..+.|++......+....
T Consensus 299 ~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~ 376 (459)
T KOG4686|consen 299 AVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPC 376 (459)
T ss_pred hhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhh
Confidence 4556666677667777888999999999999987776655554443 33333 33334456677888777766666677
Q ss_pred HhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh------hchHHH-HHHHHHHHHHHHHHHHh
Q psy2962 264 ALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH------DWRHLD-ILVTLPGLIYLAYWWFI 322 (690)
Q Consensus 264 i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~------~Wr~~~-~i~~i~~ll~~~~~~~l 322 (690)
++-.+|.++.|++.+..+...++|..+.|++++++. +|--+| .+.+..++......+.+
T Consensus 377 va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 377 VASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred hhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 888889899999999999999999999999999984 243333 44444555555444443
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00024 Score=65.27 Aligned_cols=108 Identities=13% Similarity=0.171 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHHhhhcC
Q psy2962 190 TSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLALEMVG 269 (690)
Q Consensus 190 li~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~ 269 (690)
...++......+++++.+.+.+++|.|+.++++.+...+-... -+-++.+.++.+-++.|++.+..+++.-.++.+...
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~ 119 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGTYLTSYST 119 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence 3456677777888899999999999999999999888855444 356788899999999999999999999999999999
Q ss_pred CCcchhhhhHHHHHHHHHHHHHHHHHHHh
Q psy2962 270 PSKRIIAGTVIHMFFSIGFLLIAGLAYFV 298 (690)
Q Consensus 270 ~~~R~~~~~~~~~~~~lG~~l~~~l~~~l 298 (690)
++.|++-.+++......+.++|.++..++
T Consensus 120 ~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 120 EETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888887776654
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0012 Score=68.88 Aligned_cols=112 Identities=12% Similarity=-0.073 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCCh-hHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2962 424 IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDL-NTVSIVLAMMGKFFITGAYGAVYIFS 502 (690)
Q Consensus 424 ~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~ 502 (690)
........-.+...+.+..+++.+|+|+|..++.++.++++++.++.-.+... ....++..++.+.+.+........++
T Consensus 50 a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v 129 (422)
T COG0738 50 ASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYV 129 (422)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHH
Confidence 44555555566778889999999999999999999999999998876443322 23444555666788888888889999
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 503 AEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 503 ~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
..+.|++..+.-+.+...+..+|++++|.+++.
T Consensus 130 ~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~ 162 (422)
T COG0738 130 TLLGKPESAAFRLNLAQAFNGLGAILGPLLGSS 162 (422)
T ss_pred HHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 999999888888999999999999999999875
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0002 Score=76.65 Aligned_cols=131 Identities=14% Similarity=0.002 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHhh-cCChhHHHHHHHHHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH--
Q psy2962 434 VEIPAYLSSMLTLDR-YGRKNFLCPCLILSGLCLIVSALLP-LDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTV-- 509 (690)
Q Consensus 434 ~~i~~~~~~~~l~dr-~grr~~l~~~~~~~~i~~l~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~-- 509 (690)
.--...+++||++|| +|+|++++.+.++..++.+++.... ..... ..+...+...+.+..=+....+..|++|++
T Consensus 73 lVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~g-l~i~L~~I~iG~Gl~K~NiS~llg~ly~~~Dp 151 (498)
T COG3104 73 LVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGG-LYIGLALIIVGTGLFKPNISSLLGELYPKDDP 151 (498)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccH-HHHHHHHHHhccccccccHHHHHHHhcCCCCc
Confidence 334677899999999 6999999999999999999887764 22222 333333334777777788889999999764
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCccccccccccccchhhccccCCCcchhhccccchhhhhhhhhhhh
Q psy2962 510 IRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVILIDQVFLLQV 589 (690)
Q Consensus 510 ~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (690)
.|..++++..+..++|++++|++.++.. .
T Consensus 152 rrD~gFt~fY~~iNiGsl~~p~i~~~~~------~--------------------------------------------- 180 (498)
T COG3104 152 RRDGGFTLFYMGINIGSLIAPIITGLLA------I--------------------------------------------- 180 (498)
T ss_pred ccCCCccEEEEEeehHHHHHHHHHHHHH------H---------------------------------------------
Confidence 3677888888889999999999998732 1
Q ss_pred cccchhhHHHHHHHHHHHHHHhhhccC
Q psy2962 590 EIWLPLPFLMFGVLSLTAGILSLILPE 616 (690)
Q Consensus 590 ~~~~~~~~~~~~~~~l~~~~~~~~lpe 616 (690)
.+++...|...++-..++.+..++.++
T Consensus 181 ~~g~~~gF~~aavGm~~gl~~f~~~~r 207 (498)
T COG3104 181 NYGWHVGFGLAAVGMIIGLVIFLLGRR 207 (498)
T ss_pred hhCHHHHHHHHHHHHHHHHHHHHHccc
Confidence 566777888888877777776665553
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.001 Score=72.74 Aligned_cols=139 Identities=17% Similarity=0.099 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q psy2962 430 ISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTV 509 (690)
Q Consensus 430 ~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~ 509 (690)
..++..++.....|.++|++|||..+....+.+.+..+.+.+.. |+..+ ..-...+..+.++..+++.++....+
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~----~~~~~-~~~l~g~~~~~~s~~~a~vadis~~~ 144 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG----YWFFL-LLGLSGGFSAIFSVGFAYVADISSEE 144 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH----HHHhh-hcccccchhhhhhhhhhheeeccchh
Confidence 34667788888999999999999999888877777666665543 33322 22233566677788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCccccccccccccchhhccccCCCcchhhccccchhhhhhhhhhhh
Q psy2962 510 IRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVTVILIDQVFLLQV 589 (690)
Q Consensus 510 ~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (690)
.|....|+.+.....+..++|.+.+... .
T Consensus 145 ~R~~~~gll~~~~~~~~~~~p~~~~~~~------~--------------------------------------------- 173 (463)
T KOG2816|consen 145 ERSSSIGLLSGTFGAGLVIGPALGGYLV------K--------------------------------------------- 173 (463)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHH------H---------------------------------------------
Confidence 9999999999999999999999987621 1
Q ss_pred cccchhhHHHHHHHHHHHHHHhh-hccCCCCCCCCC
Q psy2962 590 EIWLPLPFLMFGVLSLTAGILSL-ILPETHHKKLPE 624 (690)
Q Consensus 590 ~~~~~~~~~~~~~~~l~~~~~~~-~lpet~~~~l~~ 624 (690)
..+...++.+..+..+++.+... ++||+...+..+
T Consensus 174 ~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~~ 209 (463)
T KOG2816|consen 174 FLGIALVFLIAAASGILSLLYMLLFLPESLQEKERS 209 (463)
T ss_pred hcCchHHHHHHHHHHHHHHHHHhhccccccCccccc
Confidence 56678889999999888888876 889987765443
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0001 Score=77.60 Aligned_cols=107 Identities=19% Similarity=0.080 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCC-----ChhHHHHHHHHHHHHHHHHHHHHH
Q psy2962 424 IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPL-----DLNTVSIVLAMMGKFFITGAYGAV 498 (690)
Q Consensus 424 ~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~ 498 (690)
.........++.+.|.++.|++.||+|||++....++++.++.++..+... ...++....-.+.++++++-+|..
T Consensus 86 ~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlS 165 (538)
T KOG0252|consen 86 LALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLS 165 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcch
Confidence 345555666788999999999999999999999998888888875544311 112233334467789999999999
Q ss_pred HHHhhcccchHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 499 YIFSAEQFPTVIRNIGIGAGSTFARVGGIFAS 530 (690)
Q Consensus 499 ~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p 530 (690)
.+.++|....+.||+-.+....+..+|...+.
T Consensus 166 AtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ 197 (538)
T KOG0252|consen 166 ATIMSESANKKTRGAFIAAVFAMQGFGILAGG 197 (538)
T ss_pred HHHhhhhhhhccccceeEEEEEecchhHhhcc
Confidence 99999999999999988877666655544433
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0044 Score=66.49 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 484 AMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSV 534 (690)
Q Consensus 484 ~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~ 534 (690)
-++..+.....+....++-+.+..+..-|+.+.+.|++.++|+---..+.-
T Consensus 412 ~~l~sf~stvmFVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL 462 (544)
T PF13000_consen 412 HVLSSFMSTVMFVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVL 462 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHH
Confidence 355667777777788899999999999999999999999999876555444
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00014 Score=77.90 Aligned_cols=138 Identities=15% Similarity=0.157 Sum_probs=117.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
+...|........|-++.-++.+++..|+|+-+++.+++.+..+=.+..++.+|.|+.+...+++|+..+..+.++.+|+
T Consensus 405 ~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~ 484 (618)
T KOG3762|consen 405 KTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYA 484 (618)
T ss_pred ceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHH
Confidence 44556667777788888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcchhhhhHHH-HHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHHh
Q psy2962 265 LEMVGPSKRIIAGTVIH-MFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAYWWFI 322 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~-~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~~~~l 322 (690)
....||+-|..+.++++ ...++|--+|+++|+.+. +=|..|.+.++.+++.+++...+
T Consensus 485 s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~i 546 (618)
T KOG3762|consen 485 SHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISI 546 (618)
T ss_pred HhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999988764 456777778888887773 45778888888877776655544
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0011 Score=68.11 Aligned_cols=135 Identities=19% Similarity=0.202 Sum_probs=103.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcccc-CCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRF-GRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVL 263 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~-Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~ 263 (690)
+.+.|++.++..+..+..++....+++|. .+|+..+...+++.++.+.+.+.+.-..+.. -++.|+|.|+.++.+..+
T Consensus 242 a~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~llG~G~G~~F~laL~l 320 (395)
T COG2807 242 AAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLLGLGQGGAFPLALTL 320 (395)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHHhCccchHHHHHHHH
Confidence 67899999999999999999999999965 5788888888999999888888876555444 499999999999999999
Q ss_pred HhhhcCCCcc-hhhhhHHHHHHHHHHHHHHHHHHHhh----hchHHHHHHHHHHHHHHHHHH
Q psy2962 264 ALEMVGPSKR-IIAGTVIHMFFSIGFLLIAGLAYFVH----DWRHLDILVTLPGLIYLAYWW 320 (690)
Q Consensus 264 i~e~~~~~~R-~~~~~~~~~~~~lG~~l~~~l~~~l~----~Wr~~~~i~~i~~ll~~~~~~ 320 (690)
+..-.+..++ +...++.+....+=..++|.+.++++ +|+.......+..++..+.-+
T Consensus 321 i~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 321 ILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred HHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHh
Confidence 9887765443 33344444333333345888888885 599988887777766655433
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0016 Score=70.47 Aligned_cols=111 Identities=14% Similarity=0.095 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCC-hhHHHHHHHHHHHHHHHHHhc---CCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 424 IYLNFIISGMVEIPAYLSSMLTLDRYGR-KNFLCPCLILSGLCLIVSALL---PLDLNTVSIVLAMMGKFFITGAYGAVY 499 (690)
Q Consensus 424 ~~~~~~~~~l~~i~~~~~~~~l~dr~gr-r~~l~~~~~~~~i~~l~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~ 499 (690)
.++......++..++.++.++...|.+. |+.++.+.+++.+++++.... +++..+++++.-++.|++. +...+.-
T Consensus 73 fG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~-~n~a~lR 151 (488)
T KOG2325|consen 73 FGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGV-GNFAVLR 151 (488)
T ss_pred hhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCc-ccHHHHH
Confidence 3455556778888899999999988886 888999999999999888444 4434555555555554443 3345677
Q ss_pred HHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 500 IFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 500 ~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
.|+++..-.+.|.++++..+....+|.++||.+...
T Consensus 152 ~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~ 187 (488)
T KOG2325|consen 152 AYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLA 187 (488)
T ss_pred HHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHH
Confidence 788887766778888888888777777777776543
|
|
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0027 Score=65.29 Aligned_cols=294 Identities=12% Similarity=0.073 Sum_probs=153.3
Q ss_pred HHHHHhhcc-----ccCCcHHH------HHHHHHHHHHHhhh------hccccHHHHHHHHHHHHhhhhhhHHHHHHHHh
Q psy2962 203 SLIFGDISD-----RFGRKPTF------MISILIMDVFGTLA------AFAPDFWTFTACRLIVGASTSGVFLVAYVLAL 265 (690)
Q Consensus 203 ~~~~G~lsD-----r~Grr~~l------l~~~~l~~i~~~~~------~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i~ 265 (690)
-+++.++.| |+||||.- ++|.++..++...- +-.++...+...-++.-+.++.--.+.-.+..
T Consensus 80 KllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwAL 159 (510)
T KOG3574|consen 80 KLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWAL 159 (510)
T ss_pred HHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 367888888 99999854 34444444443321 12345555556667777778888888888888
Q ss_pred hhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh----------hhch---------HHHHHHHHHHHHHHHHHHHhcCch
Q psy2962 266 EMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV----------HDWR---------HLDILVTLPGLIYLAYWWFIPESA 326 (690)
Q Consensus 266 e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l----------~~Wr---------~~~~i~~i~~ll~~~~~~~lpesp 326 (690)
....+++-|-++.....+...|.+++..+-..+ .+|. ...++.+...++...+..+..+++
T Consensus 160 tmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~ 239 (510)
T KOG3574|consen 160 TMLSRENLGYASTCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKEN 239 (510)
T ss_pred HhcCHhhcCchhHHHHHHHhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 899999999998888888888888766543322 2332 122233333333333333332221
Q ss_pred hHHHhcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHH
Q psy2962 327 RWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVC 406 (690)
Q Consensus 327 ~~l~~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 406 (690)
. ++ .+ ++.+...+....-++++++-|..+....+....-+..
T Consensus 240 ~--------~~---------------~~---------------~e~~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf 281 (510)
T KOG3574|consen 240 D--------ES---------------VD---------------EELELGIHESYKLLRDVLKLKSVRWLAGILLTGKLGF 281 (510)
T ss_pred c--------hh---------------hh---------------hhhhcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHh
Confidence 1 00 00 0000000111224567777777766555544333322
Q ss_pred HHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHhhcC--ChhHHH------HHHHHHHHHHHHHHhcCC----
Q psy2962 407 SLTYYGLSWNTANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYG--RKNFLC------PCLILSGLCLIVSALLPL---- 474 (690)
Q Consensus 407 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~~i~~~~~~~~l~dr~g--rr~~l~------~~~~~~~i~~l~~~~~~~---- 474 (690)
...-...++..-+.|...-.. .+..+..++..++.++..-|+. .|++.. .=.+...+..++....+.
T Consensus 282 ~a~da~t~LkLle~Gv~ke~L-al~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~~~~~ 360 (510)
T KOG3574|consen 282 QAADALTSLKLLEHGVPKEEL-ALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVWWTPTLGHS 360 (510)
T ss_pred hhhhhccchHHHHcCCChhHh-eeeeeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHhhhcccccC
Confidence 222112222222222211111 1222445555566665555442 221111 111111111122222211
Q ss_pred ------ChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 475 ------DLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 475 ------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
....+.+....+..++....+....++.+.+.++...|+.+.+.|+..++|+---..+..+
T Consensus 361 ~G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~ 427 (510)
T KOG3574|consen 361 DGTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALW 427 (510)
T ss_pred CCceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHH
Confidence 1111222223455566666777888899999999999999999999999998765555554
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.001 Score=66.32 Aligned_cols=96 Identities=15% Similarity=0.016 Sum_probs=71.0
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCC-----ChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHH
Q psy2962 439 YLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPL-----DLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNI 513 (690)
Q Consensus 439 ~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~ 513 (690)
.++.|.+.|++|.+.++.++.+...++..++..... ...|...+..++++.+.+...........+.||. .||+
T Consensus 53 G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~ 131 (250)
T PF06813_consen 53 GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGT 131 (250)
T ss_pred cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCc
Confidence 578899999999999999999999888887766522 2234444444555555555555666667788985 6999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy2962 514 GIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 514 ~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+.|+.-....+++.+-..+...
T Consensus 132 vvgilk~~~GLSaai~t~i~~~ 153 (250)
T PF06813_consen 132 VVGILKGFFGLSAAIFTQIYSA 153 (250)
T ss_pred eehhhhHHHHhHHHHHHHHHHH
Confidence 9999999999988876666543
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0026 Score=66.88 Aligned_cols=119 Identities=18% Similarity=0.143 Sum_probs=103.3
Q ss_pred ceeeeCCccchhHHHHHHHHHHHHHHHHHHhhcc-ccCCcHHHHHHHHHHHHHHhhh---hccccHHHHHHHHHHHHhhh
Q psy2962 178 WSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISD-RFGRKPTFMISILIMDVFGTLA---AFAPDFWTFTACRLIVGAST 253 (690)
Q Consensus 178 ~~LvC~~~~~~gli~s~~~lg~~ig~~~~G~lsD-r~Grr~~ll~~~~l~~i~~~~~---~~s~s~~~l~~~R~l~G~~~ 253 (690)
|++. ..+..-+......|.++|....|++.. |.|+|+.-.+++.+..++..+. ++..+.+.+...-++.|++.
T Consensus 239 fgms---v~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~~l~G~g~ 315 (403)
T PF03209_consen 239 FGMS---VGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGVFLLGLGN 315 (403)
T ss_pred cCCC---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhh
Confidence 6775 678888899999999999999999888 6777887778877777666554 44568899999999999999
Q ss_pred hhhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh
Q psy2962 254 SGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH 299 (690)
Q Consensus 254 g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~ 299 (690)
|.........+.+...+++.|..+|.++...+++..++..+++.+.
T Consensus 316 G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~ 361 (403)
T PF03209_consen 316 GLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALR 361 (403)
T ss_pred hHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988888874
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00028 Score=57.01 Aligned_cols=59 Identities=15% Similarity=0.268 Sum_probs=54.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFT 243 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~ 243 (690)
..+.|++.+..++|+++|++....+.++..+++.+..+++...+..+.+++.++.+.+.
T Consensus 26 ~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~ 84 (85)
T PF06779_consen 26 LSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFWLWS 84 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence 57899999999999999999999999998889999999999999999999998877653
|
Note that many members are hypothetical proteins. |
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.017 Score=64.90 Aligned_cols=135 Identities=13% Similarity=0.027 Sum_probs=98.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhcccc-CCcHHHHHHHHHHHHHHhhhhcccc-------------------------H
Q psy2962 186 WYRGTSDAFLMMGVLLGSLIFGDISDRF-GRKPTFMISILIMDVFGTLAAFAPD-------------------------F 239 (690)
Q Consensus 186 ~~~gli~s~~~lg~~ig~~~~G~lsDr~-Grr~~ll~~~~l~~i~~~~~~~s~s-------------------------~ 239 (690)
..+.-..+.+.-...+..+.+++++|-| ||-+++.++.++..++.++..++.. .
T Consensus 73 ~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~ 152 (571)
T KOG1237|consen 73 GGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQL 152 (571)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHH
Confidence 3445556666667777889999999976 9999999988888887554433211 1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHhhhcC---CCcc---hhhhhHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHH
Q psy2962 240 WTFTACRLIVGASTSGVFLVAYVLALEMVG---PSKR---IIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDILVTL 310 (690)
Q Consensus 240 ~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~---~~~R---~~~~~~~~~~~~lG~~l~~~l~~~l---~~Wr~~~~i~~i 310 (690)
..+..+.-+..+|.|+.-+....+-+|-++ ++++ ...+.++....++|.+++..+-.++ .+|.+-|.+..+
T Consensus 153 ~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~ 232 (571)
T KOG1237|consen 153 AVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTV 232 (571)
T ss_pred HHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHH
Confidence 246666777788999999999999999998 3322 3557788888899998887777776 369998888877
Q ss_pred HHHHHHHHHH
Q psy2962 311 PGLIYLAYWW 320 (690)
Q Consensus 311 ~~ll~~~~~~ 320 (690)
..++.+++++
T Consensus 233 ~~~lai~iF~ 242 (571)
T KOG1237|consen 233 LNALAILIFL 242 (571)
T ss_pred HHHHHHHHHH
Confidence 7666554443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.049 Score=56.56 Aligned_cols=144 Identities=22% Similarity=0.093 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q psy2962 424 IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYI-FS 502 (690)
Q Consensus 424 ~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~ 502 (690)
....+....+...+...+.|.+.||+|||+..+...++.+++|+.... ...+..++.-+++++..+..++..-+ ++
T Consensus 71 Ia~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~---~~~~~L~~GRvlgGiaTSLLfS~FEsW~V 147 (354)
T PF05631_consen 71 IAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS---SNYPVLLLGRVLGGIATSLLFSAFESWMV 147 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444556777888899999999999999888888888865432 22445555567777777777764433 23
Q ss_pred hc----ccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHccccccccCccccccccccccchhhccccCCCcchhhccccc
Q psy2962 503 AE----QFPTVIRNIGIGAGST-FARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPKEQITRYGVT 577 (690)
Q Consensus 503 ~e----~~p~~~r~~~~g~~~~-~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (690)
.| -+|.+..+..++...+ .+.+-++.+..+..+..
T Consensus 148 ~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~---------------------------------------- 187 (354)
T PF05631_consen 148 HEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLA---------------------------------------- 187 (354)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHH----------------------------------------
Confidence 33 3566666666665542 23333343333332210
Q ss_pred hhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHhh-hccCCCC
Q psy2962 578 VILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSL-ILPETHH 619 (690)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~lpet~~ 619 (690)
|. ...+...||....++.+++++++. .-+|..+
T Consensus 188 ----~~-----~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg 221 (354)
T PF05631_consen 188 ----DW-----FGFGPVAPFDAAIVLLAVAAVLILKTWPENYG 221 (354)
T ss_pred ----HH-----hCCCCcchHHHHHHHHHHHHHHHHhcccccCC
Confidence 00 034557899999998888888876 4455544
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.015 Score=61.77 Aligned_cols=111 Identities=19% Similarity=0.160 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCC---hhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 424 IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLD---LNTVSIVLAMMGKFFITGAYGAVYI 500 (690)
Q Consensus 424 ~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~ 500 (690)
..+...+..++.++..+.+.|+.||+|-|..+.++..+.+++..+=.....+ ..... -+...+....+.+.+-...
T Consensus 81 ~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~-~l~~~Gq~iaa~Aq~Fim~ 159 (480)
T KOG2563|consen 81 ADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRR-PLTHTGQSIAAAAQPFILG 159 (480)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchh-hhhHHhHHHHHHhhhHhhc
Confidence 4566677788899999999999999999999999999988888764443221 11111 2333344444444443332
Q ss_pred ----HhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 501 ----FSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 501 ----~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
...--||+++|+++..+..+...+|.+++-.+...
T Consensus 160 lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppi 198 (480)
T KOG2563|consen 160 LPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPI 198 (480)
T ss_pred cccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccce
Confidence 34445899999999999999988888887766544
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.098 Score=57.67 Aligned_cols=115 Identities=20% Similarity=0.259 Sum_probs=72.2
Q ss_pred cchhHHHHHHHH-HHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhcc---------ccH----------------
Q psy2962 186 WYRGTSDAFLMM-GVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFA---------PDF---------------- 239 (690)
Q Consensus 186 ~~~gli~s~~~l-g~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s---------~s~---------------- 239 (690)
..+..+-....+ +..+...+..+++++++|.+++-+.+..+.....+.++. ++.
T Consensus 58 e~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~ 137 (491)
T PF03219_consen 58 EVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGF 137 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHH
Confidence 344444443333 344556789999999999998877666665555555442 111
Q ss_pred ------HHHHHHHHHHHhhhhhhHH-HHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhhh
Q psy2962 240 ------WTFTACRLIVGASTSGVFL-VAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHD 300 (690)
Q Consensus 240 ------~~l~~~R~l~G~~~g~~~~-~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~~ 300 (690)
|.+.+.-++.-+-.....+ .-..+..|.+..++-.+..++++.+.++|.++++.+...+..
T Consensus 138 i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 138 IAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111222221122222 346778999999999999999999999999998777766643
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.019 Score=56.59 Aligned_cols=52 Identities=17% Similarity=0.257 Sum_probs=37.0
Q ss_pred CcchhhhhHHHHHHHHHHHHHHHH--HH------HhhhchHHHHHHHHHHHHHHHHHHHh
Q psy2962 271 SKRIIAGTVIHMFFSIGFLLIAGL--AY------FVHDWRHLDILVTLPGLIYLAYWWFI 322 (690)
Q Consensus 271 ~~R~~~~~~~~~~~~lG~~l~~~l--~~------~l~~Wr~~~~i~~i~~ll~~~~~~~l 322 (690)
|+|+..+.+...++++|.++.... -. .-.+|++++.+.+++.++-++.+.++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 678888888888999998874332 21 11369999999988877766655544
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0099 Score=63.78 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHhhhhcc---cc------HHHHHHHHHHHHhhhhhhHHHHHHHHhhhcCCC---cchhhhhHHHHHH
Q psy2962 217 PTFMISILIMDVFGTLAAFA---PD------FWTFTACRLIVGASTSGVFLVAYVLALEMVGPS---KRIIAGTVIHMFF 284 (690)
Q Consensus 217 ~~ll~~~~l~~i~~~~~~~s---~s------~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~---~R~~~~~~~~~~~ 284 (690)
++++++.++..+|.++..++ .+ .+.+.++-++.++|.|+.-+....+++|.++++ +|.....++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 46777888888887774332 22 367889999999999999999999999999876 3566778899999
Q ss_pred HHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHH
Q psy2962 285 SIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAYWW 320 (690)
Q Consensus 285 ~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~~~ 320 (690)
++|..++..+..++. +|.+.|.+.++..++.++.++
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHH
Confidence 999999988877774 688888888877766655443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >KOG3880|consensus | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.024 Score=56.83 Aligned_cols=138 Identities=13% Similarity=0.039 Sum_probs=80.9
Q ss_pred eeeeCCccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHH
Q psy2962 179 SLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFL 258 (690)
Q Consensus 179 ~LvC~~~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~ 258 (690)
.-.|... ..|.+.-+-.+-.++--+.+....||+---.=..+..++.+.+.++.+++.+.++-+.+-.+..++.|....
T Consensus 56 ~r~c~~~-stg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEi 134 (409)
T KOG3880|consen 56 GRECQSV-STGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEI 134 (409)
T ss_pred ccccccc-ccchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCccee
Confidence 4445532 234444445555566667777788886543334556677888999999999999999998888888887665
Q ss_pred HHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhhhc-----hHHHHHHHHHHHHHHHHHHHh
Q psy2962 259 VAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHDW-----RHLDILVTLPGLIYLAYWWFI 322 (690)
Q Consensus 259 ~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~~W-----r~~~~i~~i~~ll~~~~~~~l 322 (690)
.-..+.+.+ .....+.+..+.+.+.++|..--.++.+| |...++...+.++..+.+|++
T Consensus 135 TFL~lss~Y-----~~~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~l 198 (409)
T KOG3880|consen 135 TFLALSSRY-----PSIVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFL 198 (409)
T ss_pred ehhhhhccC-----CCceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHhe
Confidence 555544332 22333444444444445554433344444 444555444444444444443
|
|
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.13 Score=54.35 Aligned_cols=58 Identities=12% Similarity=-0.030 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 477 NTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSV 534 (690)
Q Consensus 477 ~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~ 534 (690)
.++.+....+.++..+-..+....++.+.+|++.+..+-.+....-..|-+.|..+..
T Consensus 343 ~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~ 400 (406)
T KOG1479|consen 343 DGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSW 400 (406)
T ss_pred chHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4556666677777777777888999999999988777766666666666666665543
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0048 Score=49.37 Aligned_cols=42 Identities=21% Similarity=0.395 Sum_probs=37.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIM 226 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~ 226 (690)
+.++|++.++..+...++.+++|.++||+|+++.++....+.
T Consensus 34 ~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 34 PSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 789999999999999999999999999999988877765543
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.057 Score=59.15 Aligned_cols=119 Identities=22% Similarity=0.160 Sum_probs=80.9
Q ss_pred ccCCCCchHHHHHHHHHHHHHH--HHHHHHHHHhhcC-----ChhHHHHHHHHHHHHHHHHHhcCC--ChhHHHHHHHHH
Q psy2962 416 NTANLGGNIYLNFIISGMVEIP--AYLSSMLTLDRYG-----RKNFLCPCLILSGLCLIVSALLPL--DLNTVSIVLAMM 486 (690)
Q Consensus 416 ~~~~l~~~~~~~~~~~~l~~i~--~~~~~~~l~dr~g-----rr~~l~~~~~~~~i~~l~~~~~~~--~~~~~~~~~~~l 486 (690)
..+.++.+......+.++..+| ..++.|.++|-+. ||+.++++.++..++.+.+...+. .+.....++.++
T Consensus 16 l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~l 95 (433)
T PF03092_consen 16 LKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFL 95 (433)
T ss_pred HHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHH
Confidence 3456676666666666666664 4678899999863 566666677777666666666654 223333444455
Q ss_pred HHHHHHHHHHHHHHHhhccc---chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 487 GKFFITGAYGAVYIFSAEQF---PTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 487 ~~~~~~~~~~~~~~~~~e~~---p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
..++....-.+.-++..|.. |.+ |+...+.+..+..+|++++..+.|.
T Consensus 96 a~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~ 146 (433)
T PF03092_consen 96 ASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGP 146 (433)
T ss_pred HHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 55666666666666666665 555 8888889999999999999888775
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.11 Score=47.81 Aligned_cols=107 Identities=9% Similarity=-0.085 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2962 426 LNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQ 505 (690)
Q Consensus 426 ~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~ 505 (690)
....+.-....++.+++..+.+++|.|+.++++.+...+-.+... .+ ..+..+....+.+++.+..+...-.+..+.
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~-~~--~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~ 117 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFF-YP--NSYTLYPASALLGFGAALLWTAQGTYLTSY 117 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-hh--hHHHHHHHHHHHhhhhHHhhHhhhHHHHHc
Confidence 334444455567778888899999999999998887765544432 22 255666777788899999999888899999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 506 FPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 506 ~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
..++.+++-.|+...+...+.++|..+...
T Consensus 118 s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 118 STEETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred CCHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988888888887776543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.37 E-value=2 Score=46.63 Aligned_cols=120 Identities=17% Similarity=0.204 Sum_probs=83.7
Q ss_pred CccchhHHHHHHHH-HHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhcc---------cc---------------
Q psy2962 184 KAWYRGTSDAFLMM-GVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFA---------PD--------------- 238 (690)
Q Consensus 184 ~~~~~gli~s~~~l-g~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s---------~s--------------- 238 (690)
.+..++++-+..-+ +.++..++.+++++++-|.+++-..+..+....+++++. ++
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l 138 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFL 138 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccc
Confidence 35667777777777 677888999999999999998887777666666666552 11
Q ss_pred --------HHHHHHHHHHHHhhhhhhHH-HHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhhhchH
Q psy2962 239 --------FWTFTACRLIVGASTSGVFL-VAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHDWRH 303 (690)
Q Consensus 239 --------~~~l~~~R~l~G~~~g~~~~-~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~~Wr~ 303 (690)
.|.+.+.-.+.=+-.+.... .-.....|.+..++-.|..++++++.+++..++..+..++..||.
T Consensus 139 ~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k~~~ 212 (509)
T COG3202 139 KWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSKHRD 212 (509)
T ss_pred eeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhchh
Confidence 12222222222222222222 344568899999999999999999999999999888888865443
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.96 Score=49.71 Aligned_cols=141 Identities=13% Similarity=0.030 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCC-----Cc--h-HHHHHHHHHHH-HHHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q psy2962 395 KSVIIFFLWFVCSLTYYGLSWNTANL-----GG--N-IYLNFIISGMV-EIPAYLSSMLTLDRYGRKNFLCPCLILSGLC 465 (690)
Q Consensus 395 ~~l~~~~~~~~~~~~~~~~~~~~~~l-----~~--~-~~~~~~~~~l~-~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~ 465 (690)
.++.+.+..++....|+.+--.-+.+ +. + ....-...-+. .+...++-+++++|++|++............
T Consensus 8 k~~~~~l~fF~il~~Y~iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~ 87 (472)
T TIGR00769 8 KFLPLFLMFFCILFNYTILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGF 87 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHH
Confidence 44455555566666666654333332 21 1 11111111122 2333667789999999998877666555555
Q ss_pred HHHHHhc--CC--C-------------------------hhHHHHHHHHHHHHHHHHHHH-HHHHHhhcccchHHHHHHH
Q psy2962 466 LIVSALL--PL--D-------------------------LNTVSIVLAMMGKFFITGAYG-AVYIFSAEQFPTVIRNIGI 515 (690)
Q Consensus 466 ~l~~~~~--~~--~-------------------------~~~~~~~~~~l~~~~~~~~~~-~~~~~~~e~~p~~~r~~~~ 515 (690)
++++.+. |. . ..|...++.+..........+ ..+.+++|++..++-.+-.
T Consensus 88 f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy 167 (472)
T TIGR00769 88 FALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFY 167 (472)
T ss_pred HHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5444433 11 0 123333444455555556666 8899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy2962 516 GAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 516 g~~~~~~~lg~~i~p~i~~~ 535 (690)
++....+++|.++++.+..+
T Consensus 168 ~l~~~ganlg~i~sg~~~~~ 187 (472)
T TIGR00769 168 ALFGLGANVALIFSGRTIKY 187 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988765
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.52 Score=50.43 Aligned_cols=96 Identities=10% Similarity=-0.029 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHH
Q psy2962 436 IPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGI 515 (690)
Q Consensus 436 i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 515 (690)
++..+....+.|.++.|++++...+...+..+++.+..+ .+.+-+.-+..+... +.-.+.++|+-...|++.-.++.
T Consensus 55 l~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~s--v~~mq~~q~~yg~~~-a~evay~sYiys~v~~~~yq~vt 131 (412)
T PF01770_consen 55 LAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTS--VLAMQLMQFFYGLAT-AAEVAYYSYIYSVVDKEHYQKVT 131 (412)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCc--HHHHHHHHHHHHHHH-HHHHHHHHHheeecCHHHHHHHH
Confidence 334456677889999999998888777777766666532 222333333332222 22335567777777888888888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy2962 516 GAGSTFARVGGIFASYTSV 534 (690)
Q Consensus 516 g~~~~~~~lg~~i~p~i~~ 534 (690)
+.+..+..+|.+++..++-
T Consensus 132 s~~raa~l~g~~~s~~lgQ 150 (412)
T PF01770_consen 132 SYTRAATLVGRFISSLLGQ 150 (412)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8877777766666555543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.35 Score=48.91 Aligned_cols=111 Identities=21% Similarity=0.140 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy2962 425 YLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFSAE 504 (690)
Q Consensus 425 ~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e 504 (690)
........+....+.++.|.+.||.|||+.+..+.....++.+...+......+..++.....+++.+...+....+..|
T Consensus 42 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 121 (338)
T COG0477 42 GLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSE 121 (338)
T ss_pred HHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44445555666667789999999999997777766554444444444433123334444444566777788889999999
Q ss_pred ccch-HHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy2962 505 QFPT-VIRNIGIGAGST-FARVGGIFASYTSVL 535 (690)
Q Consensus 505 ~~p~-~~r~~~~g~~~~-~~~lg~~i~p~i~~~ 535 (690)
.+|. ..|+...+.... ...+|.+++|.+.+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (338)
T COG0477 122 WFPEATERGLAVGLVTLGAGALGLALGPLLAGL 154 (338)
T ss_pred hcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9997 668888888888 577888888876665
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.34 Score=55.73 Aligned_cols=101 Identities=11% Similarity=0.042 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhh-cCChhHHHHHHHHHHHHHHHHHhcCCC------hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy2962 435 EIPAYLSSMLTLDR-YGRKNFLCPCLILSGLCLIVSALLPLD------LNTVSIVLAMMGKFFITGAYGAVYIFSAEQFP 507 (690)
Q Consensus 435 ~i~~~~~~~~l~dr-~grr~~l~~~~~~~~i~~l~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p 507 (690)
.-+..++++++.|+ +||++.+..+.++..++.+++.+.... .....++.+.++.++.++.-+...+...|.++
T Consensus 36 ~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~ 115 (654)
T TIGR00926 36 CYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFE 115 (654)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcC
Confidence 34556677788875 799999999998888888777653211 11223344555667777777888888888886
Q ss_pred hH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 508 TV---IRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 508 ~~---~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
++ .|...+.+.....++|+++++.+.++
T Consensus 116 ~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~ 146 (654)
T TIGR00926 116 ERQLSLRSRFFSFFYFAINAGSLISTIITPI 146 (654)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 46778888899999999999888776
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.092 Score=55.96 Aligned_cols=112 Identities=16% Similarity=0.212 Sum_probs=83.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHH-----HHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILI-----MDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLV 259 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l-----~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~ 259 (690)
+.+..+.+.+|.+|..++.--...+ |+ |++.+.+.+- ..+.....-|.++.|..++.-+..|+..|..++.
T Consensus 280 r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVN 355 (402)
T PF02487_consen 280 RDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVN 355 (402)
T ss_pred HHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHH
Confidence 3566677788888877764332221 33 3333333322 2222233345789999999999999999999999
Q ss_pred HHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhhh
Q psy2962 260 AYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHD 300 (690)
Q Consensus 260 ~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~~ 300 (690)
.+..+.|-.++++|..+++....+-++|.+++.+++..+.+
T Consensus 356 tF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le~ 396 (402)
T PF02487_consen 356 TFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLEP 396 (402)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988754
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.0063 Score=63.41 Aligned_cols=106 Identities=12% Similarity=0.075 Sum_probs=3.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHH---HHHHHhcCC--------ChhHHHHHHHHHHHHHHHHH
Q psy2962 427 NFIISGMVEIPAYLSSMLTLDRY-GRKNFLCPCLILSGLC---LIVSALLPL--------DLNTVSIVLAMMGKFFITGA 494 (690)
Q Consensus 427 ~~~~~~l~~i~~~~~~~~l~dr~-grr~~l~~~~~~~~i~---~l~~~~~~~--------~~~~~~~~~~~l~~~~~~~~ 494 (690)
...+..++..+|+.+..+..-+. .+|++... .+.-.+. +++.-..+. .+.+..++..++.++..+-.
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~-s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWIL-SLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHHH-HHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 34456788889998887753221 24443332 1111111 111101111 12345556666777888888
Q ss_pred HHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 495 YGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTS 533 (690)
Q Consensus 495 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~ 533 (690)
.+....+..+..+++.|..+-.+...+-.+|-.+|..+.
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp -HHHH----------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999988888887777777777777776654
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.71 Score=50.25 Aligned_cols=109 Identities=21% Similarity=0.318 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhcc---ccCCcHHHHHHHHHHHHHHhhhhcc------------------ccHHHHHHHHH
Q psy2962 189 GTSDAFLMMGVLLGSLIFGDISD---RFGRKPTFMISILIMDVFGTLAAFA------------------PDFWTFTACRL 247 (690)
Q Consensus 189 gli~s~~~lg~~ig~~~~G~lsD---r~Grr~~ll~~~~l~~i~~~~~~~s------------------~s~~~l~~~R~ 247 (690)
++..-.-.+|..+++.+.+.+++ ++||++.+.++.++..++.++.-.+ +++...++.-+
T Consensus 282 ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~ 361 (461)
T KOG3098|consen 282 AIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGF 361 (461)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHH
Confidence 33333444455555566666664 5899999999988888888776542 24667888899
Q ss_pred HHHhhhhhhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh
Q psy2962 248 IVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV 298 (690)
Q Consensus 248 l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l 298 (690)
+.|++-+......+.++.... +++|..+.++...-.+++..++.......
T Consensus 362 l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 362 LLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred HHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999999 78899999988888888877765544443
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.71 E-value=1.2 Score=49.87 Aligned_cols=112 Identities=10% Similarity=-0.021 Sum_probs=63.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHH---Hhh----hhccccH-HHHHHHHHHHHhhhhhh
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVF---GTL----AAFAPDF-WTFTACRLIVGASTSGV 256 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~---~~~----~~~s~s~-~~l~~~R~l~G~~~g~~ 256 (690)
....+++.+++++|..+|+.++|++.++.-|+.. .+-+.+..++ ..+ .++...+ ..+...-++.|+..|+.
T Consensus 49 ~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~-~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G~~ 127 (521)
T PRK03612 49 VTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFV-AVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIGME 127 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999988743322222 1111111111 111 1111111 22334455677878888
Q ss_pred HHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh
Q psy2962 257 FLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV 298 (690)
Q Consensus 257 ~~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l 298 (690)
.|....+..+... ++-+...|-......+|.++|.++..++
T Consensus 128 ~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~v 168 (521)
T PRK03612 128 IPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFL 168 (521)
T ss_pred HHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHH
Confidence 7777766654322 2234556666777777777777776654
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.84 Score=36.41 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=37.2
Q ss_pred HHHHHHHHHhhccCCCCchHHH---HHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHH
Q psy2962 405 VCSLTYYGLSWNTANLGGNIYL---NFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLIL 461 (690)
Q Consensus 405 ~~~~~~~~~~~~~~~l~~~~~~---~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~ 461 (690)
..+..+=..+.+.++.|.+... ...+.-+..+++..+.|.++||+++++.......+
T Consensus 15 ~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 15 ALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 3333333344445556655444 44455567889999999999999998877655443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=93.04 E-value=14 Score=40.96 Aligned_cols=101 Identities=15% Similarity=0.037 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhc--CC------C---------------------hhHHHHHHHH
Q psy2962 435 EIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALL--PL------D---------------------LNTVSIVLAM 485 (690)
Q Consensus 435 ~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~--~~------~---------------------~~~~~~~~~~ 485 (690)
.++..++-.++.++++|.++.-+........+.+++++ |. + ..|...++.+
T Consensus 72 a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv 151 (491)
T PF03219_consen 72 AILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYV 151 (491)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 34555667788899999887765554444444444332 11 0 1122223333
Q ss_pred HHHHHHHHHHH-HHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 486 MGKFFITGAYG-AVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 486 l~~~~~~~~~~-~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+.-...+...+ ..+.+++|.++.++..+..++....+++|.++++.+...
T Consensus 152 ~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~ 202 (491)
T PF03219_consen 152 MAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSY 202 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344344444 568999999999999999999999999999998887765
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.92 E-value=19 Score=40.38 Aligned_cols=50 Identities=4% Similarity=-0.059 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 485 MMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 485 ~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
++.++..++.+|...-+..+... +.-+...|-...+..+|+++|+++.++
T Consensus 118 ~~~~~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~ 167 (521)
T PRK03612 118 LLIGLLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPF 167 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHH
Confidence 34456666666665554444322 113455677777777888888777765
|
|
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=90.40 E-value=0.98 Score=51.69 Aligned_cols=106 Identities=14% Similarity=0.045 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCccccccccccccchhhcccc
Q psy2962 485 MMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYK 564 (690)
Q Consensus 485 ~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (690)
++.+++....++...+|+-|...++.-...+|+..++..+|-++|-+++++.. . +|+-.. ..+...+..
T Consensus 245 ~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l------~---lYvD~~--~~~~~it~~ 313 (735)
T KOG3626|consen 245 LLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCL------K---LYVDFG--LSPIGITPT 313 (735)
T ss_pred HHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHH------H---eeeccc--cCCCCCCCC
Confidence 45566666777788889999999888889999999998888887777766421 1 111110 111111111
Q ss_pred CCCcchhhccccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHhhhccCCCCCCC
Q psy2962 565 TMPKEQITRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSLILPETHHKKL 622 (690)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l 622 (690)
+ .++ ...+|.-|++.+.+.++.++..+++|++..++.
T Consensus 314 D-----PrW----------------IGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~ 350 (735)
T KOG3626|consen 314 D-----PRW----------------IGAWWLGFLICGALLLFSAVPLFFFPKELPKSQ 350 (735)
T ss_pred C-----cch----------------hhHHHHHHHHHHHHHHHHHHHHHhCcccCcccc
Confidence 0 000 223577899999999999999999998766543
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=89.89 E-value=0.059 Score=60.49 Aligned_cols=162 Identities=15% Similarity=0.054 Sum_probs=2.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcC-----------C-----------------------
Q psy2962 429 IISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLP-----------L----------------------- 474 (690)
Q Consensus 429 ~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~-----------~----------------------- 474 (690)
...-+..++..++..++..|..|-+.+..+.++++++++++.+-+ .
T Consensus 45 s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 124 (539)
T PF03137_consen 45 SSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASS 124 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccC
Confidence 333445555556666666676666777778888888887765420 0
Q ss_pred ----------C----hhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Q psy2962 475 ----------D----LNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPL 540 (690)
Q Consensus 475 ----------~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~ 540 (690)
. ..++.++..++.+++....+++..+|+-|..+++..+...|+...+..+|-++|-.+++...
T Consensus 125 ~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L--- 201 (539)
T PF03137_consen 125 DCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCL--- 201 (539)
T ss_dssp ---------------------------SSS--------------------------------------------------
T ss_pred ccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHH---
Confidence 0 01122333455667777788889999999999998888899998888888777766655310
Q ss_pred cccCcccccccccccc-chhhccccCCCcchhhccccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHhhhccCCCC
Q psy2962 541 SYLGTSFEYYNSSTIT-KKCLITYKTMPKEQITRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSLILPETHH 619 (690)
Q Consensus 541 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~ 619 (690)
. +|+...... .+...+..+ ..+ ...+|.-|++.+++.++.++..+++|+...
T Consensus 202 ---~---~yvD~~~~~~~~~~i~p~d-----p~W----------------vGAWWLGfli~g~~~~l~aipl~~FPk~lp 254 (539)
T PF03137_consen 202 ---R---IYVDFPKVPPDGVGITPSD-----PRW----------------VGAWWLGFLICGILLFLSAIPLFFFPKKLP 254 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---h---ceeCCccccccCCCCCCCC-----ccH----------------HHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence 1 011111000 011111110 000 123567788888888888888888776543
Q ss_pred C
Q psy2962 620 K 620 (690)
Q Consensus 620 ~ 620 (690)
+
T Consensus 255 ~ 255 (539)
T PF03137_consen 255 G 255 (539)
T ss_dssp -
T ss_pred C
Confidence 3
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >KOG3880|consensus | Back alignment and domain information |
|---|
Probab=89.17 E-value=1.1 Score=45.42 Aligned_cols=113 Identities=20% Similarity=0.268 Sum_probs=83.2
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHhhccccCCcH------HHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhH
Q psy2962 184 KAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKP------TFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVF 257 (690)
Q Consensus 184 ~~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~------~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~ 257 (690)
++.|.-|.+..|.+|..+.. =+-|+=|-+ ++-.-.+++.+.-.+..+.++++..++.-+.-|+-.|..+
T Consensus 286 ~~sqYRwyqvlYQlGVFiSR-----SS~~~~~~p~l~~LailQ~vNl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasY 360 (409)
T KOG3880|consen 286 KDSQYRWYQVLYQLGVFISR-----SSINLFTMPYLWLLAILQFVNLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASY 360 (409)
T ss_pred hhhcchhhheeeeeeEEEEe-----ccceEEechHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHH
Confidence 34455677777776654322 111121211 1122234445555666778999999999999999999999
Q ss_pred HHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhhhc
Q psy2962 258 LVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHDW 301 (690)
Q Consensus 258 ~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~~W 301 (690)
+..+--+.+-.++++|-.+++...++-++|..++..++..+.+|
T Consensus 361 VNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh~~ 404 (409)
T KOG3880|consen 361 VNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLHNW 404 (409)
T ss_pred HHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccchhh
Confidence 99999899989999999999999999999999999998887765
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=88.86 E-value=2.3 Score=45.47 Aligned_cols=83 Identities=14% Similarity=0.029 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHHHHHHh--cCCCh-----hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH---HHHHHHHHHHHHH
Q psy2962 453 NFLCPCLILSGLCLIVSAL--LPLDL-----NTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTV---IRNIGIGAGSTFA 522 (690)
Q Consensus 453 ~~l~~~~~~~~i~~l~~~~--~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~g~~~~~~ 522 (690)
+++.++.++..++.+++.+ .+... .....+...+..++.++.=+....+.+|.++++ .|...+.......
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 4556667777777766333 33221 123444445566888888899999999999765 5677788888899
Q ss_pred HHHHHHHHHHHHH
Q psy2962 523 RVGGIFASYTSVL 535 (690)
Q Consensus 523 ~lg~~i~p~i~~~ 535 (690)
++|+.+++.+.++
T Consensus 82 n~G~~~~~~~~~~ 94 (372)
T PF00854_consen 82 NIGSLFSPTLVPY 94 (372)
T ss_dssp HHHHHHHHHCCCH
T ss_pred hhhhHhhcccchh
Confidence 9999998887765
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=87.87 E-value=3.7 Score=44.88 Aligned_cols=112 Identities=21% Similarity=0.225 Sum_probs=81.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhccccCCc--HHHHHHH--HHHHHHHhhhh---------ccccHHHHHHHHHHHHhh
Q psy2962 186 WYRGTSDAFLMMGVLLGSLIFGDISDRFGRK--PTFMISI--LIMDVFGTLAA---------FAPDFWTFTACRLIVGAS 252 (690)
Q Consensus 186 ~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr--~~ll~~~--~l~~i~~~~~~---------~s~s~~~l~~~R~l~G~~ 252 (690)
+..-+...+|.+|-.+|-.+..+.. .-++| .+++.+. +++.-..++|. +-++-+..++..++.|+.
T Consensus 307 ~~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~glt 385 (437)
T TIGR00939 307 FYPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFS 385 (437)
T ss_pred HHHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHh
Confidence 4566778888999888888665431 12333 3333222 22222223332 235667788889999999
Q ss_pred hhhhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh
Q psy2962 253 TSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV 298 (690)
Q Consensus 253 ~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l 298 (690)
.|-....++.+..+.+++++|..+..+...+..+|..+|..++..+
T Consensus 386 nGy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~ 431 (437)
T TIGR00939 386 NGYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF 431 (437)
T ss_pred hhHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999887664
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=87.72 E-value=4.7 Score=43.83 Aligned_cols=115 Identities=17% Similarity=0.042 Sum_probs=86.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhc------cc----cHHHHHHHHHHHHhhhh
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAF------AP----DFWTFTACRLIVGASTS 254 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~------s~----s~~~l~~~R~l~G~~~g 254 (690)
+..+|..-+...+..+.|.+.+.++.+|+|..+.-++++....+...++.. ++ +...++.+-.+.=+|.=
T Consensus 292 ~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW 371 (432)
T PF06963_consen 292 PSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLW 371 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 678899999999999999999999999999988887777655444333321 22 23344444455445555
Q ss_pred hhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh
Q psy2962 255 GVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH 299 (690)
Q Consensus 255 ~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~ 299 (690)
++-.+..-++.|.+|+++||..++.-....++-.++...++..++
T Consensus 372 ~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~ 416 (432)
T PF06963_consen 372 SFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFP 416 (432)
T ss_pred hhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 667778889999999999999999999888888887777666553
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=86.94 E-value=1.1 Score=47.94 Aligned_cols=102 Identities=16% Similarity=0.094 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHhh----cCChhHHHHHH-HHHHHHHHHHHhc--------CCChh---HHHHHH----HHHHHHHHH
Q psy2962 433 MVEIPAYLSSMLTLDR----YGRKNFLCPCL-ILSGLCLIVSALL--------PLDLN---TVSIVL----AMMGKFFIT 492 (690)
Q Consensus 433 l~~i~~~~~~~~l~dr----~grr~~l~~~~-~~~~i~~l~~~~~--------~~~~~---~~~~~~----~~l~~~~~~ 492 (690)
+.++....+.|..+|| +|||+..+... ....++++++.+. ++... ...++. ..+.-+...
T Consensus 78 i~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n 157 (498)
T KOG0637|consen 78 LSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANN 157 (498)
T ss_pred cccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhh
Confidence 4456667778888886 78887766544 4444444444433 11111 112222 223345556
Q ss_pred HHHHHHHHHhhcccchHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy2962 493 GAYGAVYIFSAEQFPTVIRNI-GIGAGSTFARVGGIFASYTSV 534 (690)
Q Consensus 493 ~~~~~~~~~~~e~~p~~~r~~-~~g~~~~~~~lg~~i~p~i~~ 534 (690)
......-++..++.....+.+ +.+....+..+|+.++-.+..
T Consensus 158 ~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 158 TLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred hhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 677788889999987776777 889888888888877655543
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=86.05 E-value=58 Score=35.72 Aligned_cols=101 Identities=10% Similarity=-0.040 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhc--C------CC----------------------hhHHHHHHH
Q psy2962 435 EIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALL--P------LD----------------------LNTVSIVLA 484 (690)
Q Consensus 435 ~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~--~------~~----------------------~~~~~~~~~ 484 (690)
.++...+-.++.+++.|.++...........+++++++ | .+ +.|......
T Consensus 75 avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Y 154 (509)
T COG3202 75 AVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFY 154 (509)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHH
Confidence 44555666677788888877766555555555554443 1 01 114344444
Q ss_pred HHHHHHHHHHHH-HHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 485 MMGKFFITGAYG-AVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 485 ~l~~~~~~~~~~-~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
++.-.-.+...+ ..+.+++|+...++-.+-+++.+..++++..++..+..+
T Consensus 155 i~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~ 206 (509)
T COG3202 155 IMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSW 206 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444555 678899999999999999999999999999988877765
|
|
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=85.74 E-value=4 Score=43.46 Aligned_cols=114 Identities=19% Similarity=0.159 Sum_probs=85.1
Q ss_pred ccchhHHHHH-HHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhh-------hhccccHHHHHHHHHHHHhhhhhh
Q psy2962 185 AWYRGTSDAF-LMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTL-------AAFAPDFWTFTACRLIVGASTSGV 256 (690)
Q Consensus 185 ~~~~gli~s~-~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~-------~~~s~s~~~l~~~R~l~G~~~g~~ 256 (690)
+|..-++..+ |.+.-++|.+...++-++=.|+......+=+..+-.+. ..+-.+-+++++.-.+.|+..|-.
T Consensus 281 ~~y~~~~~~l~fN~~d~vG~~~a~~~~~~~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~~~~~~~l~~~lglsnGYl 360 (406)
T KOG1479|consen 281 DWYALLLVFLSFNVFDLIGSILAALLTWPDPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFESDGWFIFLMSLLGLSNGYL 360 (406)
T ss_pred hhhHHHHHHHHhHHHHHhhhhhhhcccCCCCceehHHHHHHHHHHHHHHHhccCCCCceecCchHHHHHHHHHHhccchH
Confidence 5677777777 99999999777777766543333222222222222222 123457788899999999999999
Q ss_pred HHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh
Q psy2962 257 FLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV 298 (690)
Q Consensus 257 ~~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l 298 (690)
....+.+..+-++++++..+..+...+...|...|..+++.+
T Consensus 361 tsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~l~ 402 (406)
T KOG1479|consen 361 TSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSWVF 402 (406)
T ss_pred hhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999999999999999999999999998887653
|
|
| >KOG2601|consensus | Back alignment and domain information |
|---|
Probab=82.83 E-value=9.8 Score=39.92 Aligned_cols=46 Identities=13% Similarity=0.044 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 488 KFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTS 533 (690)
Q Consensus 488 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~ 533 (690)
.++.-+.-....-...|..|.+.|+.+.|+-+.....-..+.-.+.
T Consensus 397 R~GLW~fDlAVtqimQe~VpEseR~vv~gvqnsL~~~ldll~~ilv 442 (503)
T KOG2601|consen 397 RLGLWMFDLAVTQIMQETVPESERCVVFGVQNSLNSALDLLKDILV 442 (503)
T ss_pred HhhHHhccHHHHHHHHHhcchhhhhhhHhHHHHHHHHHHHHHHhEE
Confidence 3444444456667789999999999999999999988877765554
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 690 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 1e-07 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 8e-11
Identities = 52/355 (14%), Positives = 103/355 (29%), Gaps = 57/355 (16%)
Query: 201 LGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPD----FWTFTACRLIVGASTSGV 256
I G +SDR + +++ F P + G
Sbjct: 77 FSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMG 136
Query: 257 FLVAYVLALEMVGPSKRIIAGTVIHMFFSIG----FLLIAGLAYFVHDWRHLDILVTLPG 312
+ + +R +V + ++G LL + +DW +
Sbjct: 137 WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCA 196
Query: 313 LIYLAYWWFI----PESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEE 368
++ + + + P+S EE K P++
Sbjct: 197 ILVALFAFAMMRDTPQSCGL----PPIEEYKNDY-----------------------PDD 229
Query: 369 EEKLKAQNDGPKPSIF-ELFRHPNL--------FKKSVIIFFL-WFVCSLT-YYGLSWNT 417
+ Q K + + L F + L W L + +
Sbjct: 230 YNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK 289
Query: 418 ANLGGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLN 477
++ +Y I G + + ++S + R R + L + IV + P
Sbjct: 290 SSWAYFLYEYAGIPGTL-LCGWMSDKVF--RGNRGATGVFFMTLVTIATIVYWMNPAGNP 346
Query: 478 TVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAG--STFARVGGIFAS 530
TV ++ ++ F I G + + + E P + G AG F +GG A+
Sbjct: 347 TVDMICMIVIGFLIYGPVMLIGLHALELAPK--KAAGTAAGFTGLFGYLGGSVAA 399
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 2e-08
Identities = 27/134 (20%), Positives = 58/134 (43%), Gaps = 4/134 (2%)
Query: 196 MMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSG 255
++ + L +G ISDR GR+P ++ + I + +A A + G T
Sbjct: 45 LLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGV 104
Query: 256 VFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLL---IAGLAYFVHDWRHLDILVTLPG 312
++A L ++ ++ A ++++M + LL I GL + +WR + + +
Sbjct: 105 GGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLC 164
Query: 313 LI-YLAYWWFIPES 325
+ ++PE+
Sbjct: 165 AGVTFSMARWMPET 178
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 2e-07
Identities = 72/479 (15%), Positives = 125/479 (26%), Gaps = 166/479 (34%)
Query: 281 HMFFSIGFLLIAGLAYFVHDWRHLDIL-VTLPGLIYLAYWWFIPESARWLISKGRNEEAK 339
HM F G H +++ DIL V + + + + ++SK EE
Sbjct: 6 HMDFETG----------EHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK---EEID 52
Query: 340 LIIQAVAEENKV-------------ILEGFVLDGL---------------LAPSPE---- 367
II + + +++ FV + L PS
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 368 EEEKLKAQNDGP----------------KPSIFELFRHPNL-------FKKSVI------ 398
E++ + ND + ++ EL N+ K+ +
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 399 -----------IFFLWFVCSLTYYGLSWNTANLGGNIYLNF---------IISGMVEIPA 438
IF+L + + L I N+ I + I A
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 439 YLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLD-LNTVSIVLAMMG--KFFITGAY 495
L +L Y CL+V L + A K +T +
Sbjct: 233 ELRRLLKSKPYEN-------------CLLV-----LLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 496 GAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSV------LEA---FPL--SYLG 544
V F + T I T V + Y E P S +
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 545 TS----------FEYYNSSTITKKCLITYKTM-PKEQITRYGVTVILIDQVF----LLQV 589
S +++ N +T + + P E + + LL +
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 590 EIWLPLPF-----LM--FGVLSL--------TAGILSLILPE--------THHKKLPES 625
IW + ++ SL T I S+ L H+ + +
Sbjct: 395 -IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 1e-06
Identities = 64/440 (14%), Positives = 124/440 (28%), Gaps = 142/440 (32%)
Query: 125 WL-----FDPEWNTTVSEVLMVFHRRLGDKVPSLYIDLNQTIQYSRSTQEPVLTNFVMWS 179
WL PE TV E+L ++ D + D + I+ + + L +
Sbjct: 186 WLNLKNCNSPE---TVLEMLQKLLYQI-DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 180 ------LVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLA 233
LV +AF ++S + IL+ F +
Sbjct: 242 PYENCLLVLLNVQNAKAWNAF-------------NLSCK----------ILLTTRFKQVT 278
Query: 234 AFAPDFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFF--------S 285
F + A+T+ + L + + L K ++ + +
Sbjct: 279 DF------------LSAATTTHISLDHHSMTLTP-DEVKSLLL-KYLDCRPQDLPREVLT 324
Query: 286 IGFLLIAGLAYFVHD-------WRHLD-------ILVTL----PGLIYLAYWWF------ 321
++ +A + D W+H++ I +L P +
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 322 --IPE---SARWLISKGRNEE---AKLIIQAVAE----ENKVILEGFVLDGLLAPSPEEE 369
IP S W + KL ++ E E+ + + L+ L E E
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE--LKVKLENE 442
Query: 370 EKLKAQ-------------NDGPKPSIFELF-----RH---------PNLFKKSVIIF-- 400
L +D P + + F H LF+ +F
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM---VFLD 499
Query: 401 FLWFVCSLTYYGLSWNTANLGGN------IYLNFIISGMVEIPAYLSSMLT-LDRYGRKN 453
F + + + +WN + N Y +I + ++++L L +
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENL 559
Query: 454 FLCPCLILSGLCLIVSALLP 473
L+ AL+
Sbjct: 560 ICSKY-----TDLLRIALMA 574
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 2e-07
Identities = 44/358 (12%), Positives = 96/358 (26%), Gaps = 55/358 (15%)
Query: 193 AFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAF--------APDFWTFTA 244
A + + LL +FG +SD+ G + + I M V
Sbjct: 50 AAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIV 109
Query: 245 CRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHDWRHL 304
+ +G + ++ + MF +G+ L A + + +
Sbjct: 110 GGIYLGFCFNAGAPAVEAFIEKVSR--RSNFEFGRARMFGCVGWALGASIVGIMFTINNQ 167
Query: 305 DILVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAP 364
+ G + F +
Sbjct: 168 FVFWLGSGCALILAVLLF---------------------------------FAKTDAPSS 194
Query: 365 SPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSL------TYYGLSWNTA 418
+ + ELFR P L+ S+ + + + ++ + T
Sbjct: 195 ATVANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATG 254
Query: 419 NLGGNIY-LNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLN 477
G ++ + ++ + L ++R G KN L + + +I S+ +
Sbjct: 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT---S 311
Query: 478 TVSIVLAMMGKFFITGAY-GAVYIFSAEQFPTVIRNIGIGAGSTFAR-VGGIFASYTS 533
+ +V+ F + + QF F + + IF S +
Sbjct: 312 ALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLA 369
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 8e-06
Identities = 45/327 (13%), Positives = 87/327 (26%), Gaps = 42/327 (12%)
Query: 196 MMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTL----AAFAPDFWTFTACRLIVGA 251
G + + G + + K + + + G AA ++ F I+ A
Sbjct: 71 YFGYFIIPIPAGILMKKLSYKAGIITGLFLY-ALGAALFWPAAEIMNYTLFLVGLFIIAA 129
Query: 252 STSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGF----LLIAGLAYFVHDWRHLDIL 307
+ A + S + F S G + L + D+L
Sbjct: 130 GLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVL 189
Query: 308 VTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPE 367
+ AY + S + +II A+ V+L ++ P+ +
Sbjct: 190 DKMSPEQLSAYKHSLVLSVQTPY---------MIIVAI-----VLLVALLIMLTKFPALQ 235
Query: 368 EEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNTANLGGNIYLN 427
+ A+ S+ L R + + F Y G + +
Sbjct: 236 SDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFC--------YVGAQTACWSYLIRYAVE 287
Query: 428 FIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMG 487
I A + F + L + L + + +
Sbjct: 288 EIPGMTAGFAANYLT------GTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLI 341
Query: 488 KFFITGAYG-----AVYIFSAEQFPTV 509
F G G F + Q+PT+
Sbjct: 342 SAFAGGHVGLIALTLCSAFMSIQYPTI 368
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 690 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.97 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.97 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.95 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.94 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.91 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.89 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.08 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 98.97 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 98.94 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 98.9 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.88 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 98.77 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 98.65 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=361.43 Aligned_cols=383 Identities=19% Similarity=0.297 Sum_probs=285.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhh------------------ccccHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAA------------------FAPDFWTFTACR 246 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~------------------~s~s~~~l~~~R 246 (690)
+.+.|++.+++++|.++|++++|+++||+|||++++++.+++.+++++++ +++|+++++++|
T Consensus 54 ~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R 133 (491)
T 4gc0_A 54 NSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYR 133 (491)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999988 478999999999
Q ss_pred HHHHhhhhhhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh-----------hchHHHHHHHHHHHHH
Q psy2962 247 LIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH-----------DWRHLDILVTLPGLIY 315 (690)
Q Consensus 247 ~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~-----------~Wr~~~~i~~i~~ll~ 315 (690)
+++|++.|+..+...+++.|+.|+++|++..++.+.++.+|.++++.+++... .||+.+.+..++.++.
T Consensus 134 ~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (491)
T 4gc0_A 134 IIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF 213 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999887762 4888999999999998
Q ss_pred HHHHHHhcCchhHHHhcCCHHHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHH
Q psy2962 316 LAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKK 395 (690)
Q Consensus 316 ~~~~~~lpesp~~l~~~~~~~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 395 (690)
++..+++||||||+..|++.+++++.+++....+....+..... ......++.......++.+.....
T Consensus 214 ~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 281 (491)
T 4gc0_A 214 LMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIK------------HSLDHGRKTGGRLLMFGVGVIVIG 281 (491)
T ss_dssp HHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHTTHHHHSCCTHHHHH
T ss_pred hhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHH------------HHHHhhhhhhhHHHHhcccHHHHH
Confidence 88899999999999999999999999988765433221111100 000001111122333444444433
Q ss_pred HHHHHHHHH--HHHHHHHHHhhccCCC--CchHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHh
Q psy2962 396 SVIIFFLWF--VCSLTYYGLSWNTANL--GGNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSAL 471 (690)
Q Consensus 396 ~l~~~~~~~--~~~~~~~~~~~~~~~l--~~~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~ 471 (690)
.....+.++ .+...+|...+..... ..+......+.++..+++.++++++.||+|||+.++.+...++++++.+..
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~ 361 (491)
T 4gc0_A 282 VMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGT 361 (491)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHH
Confidence 333333333 2334444443322211 133445566778889999999999999999999999888888777766544
Q ss_pred c--CCChhHHHHHHHHHHHHHHHH-HHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCcccc
Q psy2962 472 L--PLDLNTVSIVLAMMGKFFITG-AYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVLEAFPLSYLGTSFE 548 (690)
Q Consensus 472 ~--~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~ 548 (690)
. .....+..++..++...+.+. ..++.+.+.+|++|++.|++++|+++.+++++++++|.+.+... .
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~------~---- 431 (491)
T 4gc0_A 362 AFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMD------K---- 431 (491)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHC------H----
T ss_pred HHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H----
Confidence 3 223333333333333333333 34578899999999999999999999999999999988876511 0
Q ss_pred ccccccccchhhccccCCCcchhhccccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHhh-hccCCCCCCCCC
Q psy2962 549 YYNSSTITKKCLITYKTMPKEQITRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSL-ILPETHHKKLPE 624 (690)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~lpet~~~~l~~ 624 (690)
... .....+...+|++++++++++.++++ ++||||+|+++|
T Consensus 432 ----------------------------------~~~-~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLee 473 (491)
T 4gc0_A 432 ----------------------------------NSW-LVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEE 473 (491)
T ss_dssp ----------------------------------HHH-HHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHH
T ss_pred ----------------------------------HHH-HHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHH
Confidence 000 00023445678899999999888775 899999998755
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-30 Score=285.07 Aligned_cols=357 Identities=12% Similarity=0.062 Sum_probs=269.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhc----cccHHHHHHHHHHHHhhhhhhHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAF----APDFWTFTACRLIVGASTSGVFLVA 260 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~----s~s~~~l~~~R~l~G~~~g~~~~~~ 260 (690)
..+.|++.+++.++..++++++|+++||+|||++++++.++.+++.+++++ +++++.++++|++.|++.+...+..
T Consensus 61 ~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~ 140 (451)
T 1pw4_A 61 RGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC 140 (451)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchH
Confidence 578999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh---hh-chHHHHHHHHHHHHHH-HHHHHhcCchhHHHhcCCH
Q psy2962 261 YVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV---HD-WRHLDILVTLPGLIYL-AYWWFIPESARWLISKGRN 335 (690)
Q Consensus 261 ~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l---~~-Wr~~~~i~~i~~ll~~-~~~~~lpesp~~l~~~~~~ 335 (690)
.+++.|++|+++|++++++...+..+|.++++.++..+ .+ ||+.|++.+++.++.. +.++++||+|++...+.+.
T Consensus 141 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (451)
T 1pw4_A 141 GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIE 220 (451)
T ss_dssp HHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCT
T ss_pred HHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChh
Confidence 99999999999999999999999999999999999775 36 9999999998877654 4556789887642111100
Q ss_pred HHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHH-HHHHh
Q psy2962 336 EEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLT-YYGLS 414 (690)
Q Consensus 336 ~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~-~~~~~ 414 (690)
++ ++... .+.+.+.+.+........++++|++.++...+..++..+..... .+...
T Consensus 221 ~~---------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (451)
T 1pw4_A 221 EY---------------------KNDYP--DDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPT 277 (451)
T ss_dssp TT---------------------CCC---------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hh---------------------ccccc--ccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00000 00000000000111111467788888887777666665544333 34444
Q ss_pred hccCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhc--CChhHHHHHHHHHH-HHHHHHHhcCCChhHHHHHHHHHHH
Q psy2962 415 WNTANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRY--GRKNFLCPCLILSG-LCLIVSALLPLDLNTVSIVLAMMGK 488 (690)
Q Consensus 415 ~~~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~--grr~~l~~~~~~~~-i~~l~~~~~~~~~~~~~~~~~~l~~ 488 (690)
+..+.++.+ ......+.+++.+++.++.+++.||+ |||+.+..+..+.. ++++++.+.+....+...+..++.+
T Consensus 278 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 357 (451)
T 1pw4_A 278 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG 357 (451)
T ss_dssp HBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence 544445644 34556667788899999999999999 99998887776666 5555554444334555555666666
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHccccccccCccccccccccccchhhccccCCC
Q psy2962 489 FFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARV-GGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMP 567 (690)
Q Consensus 489 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~l-g~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (690)
++.+...+....+..|.+|++.|+++.|+.+.+..+ |++++|.+.+... +
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~------~----------------------- 408 (451)
T 1pw4_A 358 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTV------D----------------------- 408 (451)
T ss_dssp HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H-----------------------
T ss_pred HHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------H-----------------------
Confidence 777777888889999999999999999999999999 9999999988621 1
Q ss_pred cchhhccccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHhhhcc
Q psy2962 568 KEQITRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSLILP 615 (690)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lp 615 (690)
..++...|++.+++.+++.++.++++
T Consensus 409 ----------------------~~g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 409 ----------------------FFGWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp ----------------------SSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------hcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888887776554
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8e-29 Score=270.23 Aligned_cols=322 Identities=11% Similarity=0.074 Sum_probs=252.9
Q ss_pred ceeehhhhhhhhccCCCCCcchhccchhhcccccCCCccccccccceeeeCCccchhHHHHHHHHHHHHHHHHHHhhccc
Q psy2962 133 TTVSEVLMVFHRRLGDKVPSLYIDLNQTIQYSRSTQEPVLTNFVMWSLVCDKAWYRGTSDAFLMMGVLLGSLIFGDISDR 212 (690)
Q Consensus 133 tiv~e~~p~~~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvC~~~~~~gli~s~~~lg~~ig~~~~G~lsDr 212 (690)
.+..-.+|.+.+++|.+ ..+.|++.+++.++.+++++++|+++||
T Consensus 43 ~~~~~~~~~~~~~~g~s-----------------------------------~~~~g~~~~~~~~~~~i~~~~~G~l~dr 87 (438)
T 3o7q_A 43 NLNDILLPQFQQAFTLT-----------------------------------NFQAGLIQSAFYFGYFIIPIPAGILMKK 87 (438)
T ss_dssp HHHHHHHHHHHHHSCCC-----------------------------------SHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHcCCC-----------------------------------HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34555678888888866 5789999999999999999999999999
Q ss_pred cCCcHHHHHHHHHHHHHHhhh---hccccHHHHHHHHHHHHhhhhhhHHHHHHHHhhhcCCCcchhhhhHHHHHHHHHHH
Q psy2962 213 FGRKPTFMISILIMDVFGTLA---AFAPDFWTFTACRLIVGASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFL 289 (690)
Q Consensus 213 ~Grr~~ll~~~~l~~i~~~~~---~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~R~~~~~~~~~~~~lG~~ 289 (690)
+|||++++++.++.+++.+++ +++++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.+
T Consensus 88 ~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 167 (438)
T 3o7q_A 88 LSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAI 167 (438)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh----h-------------------------chHHHHHHHHHHHHHHHHHHHh--cCchhHHHhcCCHHHH
Q psy2962 290 LIAGLAYFVH----D-------------------------WRHLDILVTLPGLIYLAYWWFI--PESARWLISKGRNEEA 338 (690)
Q Consensus 290 l~~~l~~~l~----~-------------------------Wr~~~~i~~i~~ll~~~~~~~l--pesp~~l~~~~~~~ea 338 (690)
+++.++..+. + ||+.|++.+++.++..+..++. ||+++..
T Consensus 168 ~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--------- 238 (438)
T 3o7q_A 168 IAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN--------- 238 (438)
T ss_dssp HHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---------
T ss_pred HHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---------
Confidence 9999987764 2 9999988887766665544443 5443200
Q ss_pred HHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHH-HHHHhh-c
Q psy2962 339 KLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLT-YYGLSW-N 416 (690)
Q Consensus 339 ~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~-~ 416 (690)
+++++++....++++++|+|.++...+..++........ .+...+ .
T Consensus 239 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (438)
T 3o7q_A 239 --------------------------------HSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAV 286 (438)
T ss_dssp --------------------------------CCCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------------cccccccchhhhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 000001112235677889998888777666555543333 344444 3
Q ss_pred cCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Q psy2962 417 TANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITG 493 (690)
Q Consensus 417 ~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 493 (690)
.+.++.+ ......+..++.+++.++.+++.||+|||+.+..+.++.+++++++.+.+. .+ ..+..++.+++.+.
T Consensus 287 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~g~~~~~ 363 (438)
T 3o7q_A 287 EEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG--HV-GLIALTLCSAFMSI 363 (438)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCH--HH-HHHHHHHHHHHHTT
T ss_pred hccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCC--cH-HHHHHHHHHHHHHH
Confidence 3444533 445556667888899999999999999999999998888888777666542 22 23344556677888
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 494 AYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 494 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
.++..+.+..|.+|++ ++.+.++.. .+.+|++++|.+.+.
T Consensus 364 ~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~ 403 (438)
T 3o7q_A 364 QYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGF 403 (438)
T ss_dssp HHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHH
Confidence 8899999999999977 888888877 778999999999987
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-26 Score=254.74 Aligned_cols=351 Identities=10% Similarity=-0.022 Sum_probs=224.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccc-cCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDR-FGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVL 263 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr-~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~ 263 (690)
..+.+++.+++.++..++++++|+++|| +|||++++++.++.+++.++++++++++.++++|++.|++.+...+...++
T Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~ 132 (491)
T 4aps_A 53 RATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTL 132 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHH
Confidence 6789999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCc--chhhhhHHHHHHHHHHHHHHHHHHHh---hhchHHHHHHHHHHHHHHHHHHHh-cCch----hHHHhcC
Q psy2962 264 ALEMVGPSK--RIIAGTVIHMFFSIGFLLIAGLAYFV---HDWRHLDILVTLPGLIYLAYWWFI-PESA----RWLISKG 333 (690)
Q Consensus 264 i~e~~~~~~--R~~~~~~~~~~~~lG~~l~~~l~~~l---~~Wr~~~~i~~i~~ll~~~~~~~l-pesp----~~l~~~~ 333 (690)
+.|++|+++ |+.+.++++.+.++|.+++|.+++.+ .+||+.|++.++..++.++..++. |+.. +....+.
T Consensus 133 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (491)
T 4aps_A 133 VGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPL 212 (491)
T ss_dssp HHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCC
T ss_pred HHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCcc
Confidence 999999988 77788889999999999999999887 379999999877766655444432 2110 0000111
Q ss_pred CHHHHHHHHHH--------------HHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHH
Q psy2962 334 RNEEAKLIIQA--------------VAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVII 399 (690)
Q Consensus 334 ~~~ea~~~l~~--------------~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~ 399 (690)
+.++.++..+. ....++.+.++.....................+.......+..+....+...+..
T Consensus 213 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (491)
T 4aps_A 213 APEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAA 292 (491)
T ss_dssp SHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTTHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHH
Confidence 33333333222 1111111111100000000000000000000000000001111111222222222
Q ss_pred HHHHHHHHHHH-HHHhhccCCCC---chHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHH-----HHHHHHHHHHHHHH
Q psy2962 400 FFLWFVCSLTY-YGLSWNTANLG---GNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLC-----PCLILSGLCLIVSA 470 (690)
Q Consensus 400 ~~~~~~~~~~~-~~~~~~~~~l~---~~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~-----~~~~~~~i~~l~~~ 470 (690)
.+.+....... +...+..+..+ ..........++..+++..+.+++.||+|||+... .+.++.+++++++.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~ 372 (491)
T 4aps_A 293 VLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMA 372 (491)
T ss_dssp HHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHH
Confidence 22222221111 11111111111 22334455666777788889999999999986544 56666666655544
Q ss_pred hcC-------CChhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 471 LLP-------LDLNTVSIVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 471 ~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
... ....+...+..++.+++.+...+..+.++.|.+|++.|+++.|+.+....+|++++|.+.++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~ 444 (491)
T 4aps_A 373 IPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTL 444 (491)
T ss_dssp HHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 421 12344455556666777777788889999999999999999999999999999999999876
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-27 Score=254.80 Aligned_cols=304 Identities=14% Similarity=0.080 Sum_probs=227.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
+.+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.++.+++++++.+++.|++.|++.+...+....++
T Consensus 34 ~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~ 113 (375)
T 2gfp_A 34 EGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLP 113 (375)
T ss_dssp THHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHH-HHHHhcCchhHHHhcCCHHHHHH
Q psy2962 265 LEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLA-YWWFIPESARWLISKGRNEEAKL 340 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~-~~~~lpesp~~l~~~~~~~ea~~ 340 (690)
.|++|+++|++++++.+.+..+|.++++.++..+. +||+.+++.++..++..+ ..+++||++++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 182 (375)
T 2gfp_A 114 RDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD----------- 182 (375)
T ss_dssp HHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT-----------
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC-----------
Confidence 99999999999999999999999999999999873 799999998888776654 455678775410
Q ss_pred HHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHHHHHHhhccCC-
Q psy2962 341 IIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNTAN- 419 (690)
Q Consensus 341 ~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~- 419 (690)
+++++...++++++|+|.++...+..++.++.........+.+...
T Consensus 183 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (375)
T 2gfp_A 183 ---------------------------------APRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAV 229 (375)
T ss_dssp ---------------------------------CCCCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHH
T ss_pred ---------------------------------cccccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001223456778888887776666655554443333333322222
Q ss_pred CCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHH-HHHHHH--HHHhcCCChhHHHHHHHHHHHHHHHH
Q psy2962 420 LGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLIL-SGLCLI--VSALLPLDLNTVSIVLAMMGKFFITG 493 (690)
Q Consensus 420 l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~-~~i~~l--~~~~~~~~~~~~~~~~~~l~~~~~~~ 493 (690)
.+.+ ........++..+++.++.+++.||++++ +..+..+ ...+.. ........+.+...+..++.+++.+.
T Consensus 230 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 307 (375)
T 2gfp_A 230 LGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGM 307 (375)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHH
Confidence 3333 23344445566677777777777777662 2222222 111111 11111112334444555666788888
Q ss_pred HHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 494 AYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 494 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
..+....+..|.+| +.|+++.|+.+....+|.+++|.+.+.
T Consensus 308 ~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~ 348 (375)
T 2gfp_A 308 LFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAM 348 (375)
T ss_dssp TSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTH
T ss_pred hhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999 789999999999999999999988765
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.2e-24 Score=231.78 Aligned_cols=350 Identities=16% Similarity=0.115 Sum_probs=220.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHh---hhhccccHH-HHHHHHHHHHhhhhhhHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGT---LAAFAPDFW-TFTACRLIVGASTSGVFLVA 260 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~---~~~~s~s~~-~l~~~R~l~G~~~g~~~~~~ 260 (690)
+.+.|++.+++.++..++++++|+++||+|||++++++.++.+++.. ..++++... .+...+++.|++.+..++..
T Consensus 42 ~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 121 (417)
T 2cfq_A 42 KSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAG 121 (417)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 67899999999999999999999999999999999988877655321 112222211 23455666666555544444
Q ss_pred HHHHhhhcCC--CcchhhhhHHHHHHHHHHHHHHHHHHHhh--hchHHHHHHHHHHHHHHHHHHHhcCchhHHHhcCCHH
Q psy2962 261 YVLALEMVGP--SKRIIAGTVIHMFFSIGFLLIAGLAYFVH--DWRHLDILVTLPGLIYLAYWWFIPESARWLISKGRNE 336 (690)
Q Consensus 261 ~~~i~e~~~~--~~R~~~~~~~~~~~~lG~~l~~~l~~~l~--~Wr~~~~i~~i~~ll~~~~~~~lpesp~~l~~~~~~~ 336 (690)
...+.++.++ ++|+...+....+..+|..++|.++.++. +||+.|++.+++.++..+..++.+|+++. +.+.+
T Consensus 122 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 198 (417)
T 2cfq_A 122 APAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPS---SATVA 198 (417)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSCCCCSC---SSCSS
T ss_pred HHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcCccccc---ccccc
Confidence 4444444432 45677777777778888888888887763 69999988877765555544444433210 00000
Q ss_pred HHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHH-HHHHhh
Q psy2962 337 EAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLT-YYGLSW 415 (690)
Q Consensus 337 ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~ 415 (690)
+ ..++.+++....++++++|+|.++...+..+..+...... .....+
T Consensus 199 ---------------~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (417)
T 2cfq_A 199 ---------------N-----------------AVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANF 246 (417)
T ss_dssp ---------------S-----------------SSSSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------c-----------------ccccccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000000111123456788888776555433322221111 111112
Q ss_pred ccCCCC-----c-hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q psy2962 416 NTANLG-----G-NIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKF 489 (690)
Q Consensus 416 ~~~~l~-----~-~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~ 489 (690)
..+.++ . .......+..+.++++.++.+++.||+|||+.+..+.++.++..+.+.+.+ ..+..++..++.++
T Consensus 247 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~ 324 (417)
T 2cfq_A 247 FTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT--SALEVVILKTLHMF 324 (417)
T ss_dssp HHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC--SHHHHHHHTTHHHH
T ss_pred HHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHH
Confidence 111122 1 123344555677888999999999999999998888877777665554433 23334444444455
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHH-HHHHHHHHHHHHHHHHHccccccccCccccccccccccchhhccccCCCc
Q psy2962 490 FITGAYGAVYIFSAEQFPTVIRNIGIGAG-STFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMPK 568 (690)
Q Consensus 490 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~-~~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (690)
+.....+..+.++.|.+|++.|+++.|+. +...++|++++|.+.|+.. +
T Consensus 325 ~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~------~------------------------ 374 (417)
T 2cfq_A 325 EVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY------E------------------------ 374 (417)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHH------H------------------------
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHH------H------------------------
Confidence 55555666788999999999999999995 7888899999999998621 1
Q ss_pred chhhccccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHhh-hccCCCCCCC
Q psy2962 569 EQITRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSL-ILPETHHKKL 622 (690)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~lpet~~~~l 622 (690)
..++...|.+.++++++++++.+ +.||+++.++
T Consensus 375 ---------------------~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~~ 408 (417)
T 2cfq_A 375 ---------------------SIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp ---------------------HSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTCS
T ss_pred ---------------------hcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchHH
Confidence 33456678888888888877765 5666655444
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.6e-23 Score=229.65 Aligned_cols=137 Identities=15% Similarity=0.143 Sum_probs=124.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhcccc-CCcHHHHHHHHHHHHHHhhhhccc-cHHHHHHHHHHHHhhhhhhHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRF-GRKPTFMISILIMDVFGTLAAFAP-DFWTFTACRLIVGASTSGVFLVAYV 262 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~-Grr~~ll~~~~l~~i~~~~~~~s~-s~~~l~~~R~l~G~~~g~~~~~~~~ 262 (690)
..+.+++.+++.++..++++++|+++||+ |||++++++.++.+++.++.++++ +++.++++|++.|++.+...+...+
T Consensus 53 ~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~ 132 (524)
T 2xut_A 53 GAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSS 132 (524)
T ss_dssp TTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHH
Confidence 67899999999999999999999999999 999999999999999999999999 9999999999999999999999999
Q ss_pred HHhhhcCCCcchhhhhH---HHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHH
Q psy2962 263 LALEMVGPSKRIIAGTV---IHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAYWWF 321 (690)
Q Consensus 263 ~i~e~~~~~~R~~~~~~---~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~~~~ 321 (690)
++.|++|+++|+++.+. ...+.++|.+++|.+++.+. +||+.|++.++..++..+..++
T Consensus 133 ~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 133 FMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999877666 88999999999999887763 7999999988876665554443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.9e-09 Score=117.04 Aligned_cols=111 Identities=14% Similarity=0.064 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHh----cCCChhHHHHHHHHHHHHHHHHHHHHH
Q psy2962 423 NIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSAL----LPLDLNTVSIVLAMMGKFFITGAYGAV 498 (690)
Q Consensus 423 ~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~ 498 (690)
...+......+..+++.++.|++.||+|||+++..+.++.+++.++..+ .++ .+..++..++.+++.+...+..
T Consensus 63 ~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~l~G~~~~~~~~~~ 140 (451)
T 1pw4_A 63 DLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS--IAVMFVLLFLCGWFQGMGWPPC 140 (451)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSS--SSHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcccc--HHHHHHHHHHHHHHhhhccchH
Confidence 4556667777888999999999999999999999999999999988877 543 3455666777788888889999
Q ss_pred HHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 499 YIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 499 ~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
..++.|.+|++.|+.++|+.+....+|.+++|.+.+.
T Consensus 141 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 177 (451)
T 1pw4_A 141 GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL 177 (451)
T ss_dssp HHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999876
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.9e-08 Score=108.60 Aligned_cols=119 Identities=13% Similarity=-0.052 Sum_probs=98.8
Q ss_pred hccCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHH---HhcCCChhHHHHHHHHHHH
Q psy2962 415 WNTANLGG---NIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVS---ALLPLDLNTVSIVLAMMGK 488 (690)
Q Consensus 415 ~~~~~l~~---~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~---~~~~~~~~~~~~~~~~l~~ 488 (690)
...+.++. ...+......+...++.++.|++.||+|||+.+..+.++.+++.++. ...+ +.+..++..++.+
T Consensus 51 ~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G 128 (438)
T 3o7q_A 51 QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM--NYTLFLVGLFIIA 128 (438)
T ss_dssp HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccc--cHHHHHHHHHHHH
Confidence 34444553 34555666777788899999999999999999999999999888877 4433 3556667777888
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 489 FFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 489 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
++.+...+....++.|.+|++.|+.++|+.+....+|.+++|.+.+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 175 (438)
T 3o7q_A 129 AGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_dssp HHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred hhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998876
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.94 E-value=8.2e-09 Score=109.18 Aligned_cols=121 Identities=12% Similarity=-0.058 Sum_probs=99.7
Q ss_pred HhhccCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Q psy2962 413 LSWNTANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKF 489 (690)
Q Consensus 413 ~~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~ 489 (690)
.+...++++.+ .........+...++.++.|++.||+|||+.+..+.++.+++.++..+.+ +.+..++..++.++
T Consensus 23 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~g~ 100 (375)
T 2gfp_A 23 IADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS--SLTVLIAASAMQGM 100 (375)
T ss_dssp HHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHH
Confidence 33345556643 34555666777889999999999999999999999999988888877764 34555666677788
Q ss_pred HHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 490 FITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 490 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+.+...+....+..|.+|++.|+.+.++.+....+|.+++|.+.++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 146 (375)
T 2gfp_A 101 GTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGL 146 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 8888889999999999999999999999999999999999999887
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.1e-08 Score=110.20 Aligned_cols=110 Identities=14% Similarity=-0.083 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-cCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2962 424 IYLNFIISGMVEIPAYLSSMLTLDR-YGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIFS 502 (690)
Q Consensus 424 ~~~~~~~~~l~~i~~~~~~~~l~dr-~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 502 (690)
.........++..++.++.|+++|| +|||+++..+.++.+++.++..+.++ .+..++..++.+++.+...+....++
T Consensus 56 ~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~g~~~~~~~~~~~~~~ 133 (491)
T 4aps_A 56 AASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFG--ASALFGSIILIIIGTGFLKPNVSTLV 133 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCS--TTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHhccchHHHHH
Confidence 4455666778888999999999999 89999999999999988888776543 44555666777788888999999999
Q ss_pred hcccchHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 503 AEQFPTVI--RNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 503 ~e~~p~~~--r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
.|.+|++. |+.++++.+....+|.+++|.+.+.
T Consensus 134 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 168 (491)
T 4aps_A 134 GTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGA 168 (491)
T ss_dssp HHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCcccccceeeehHHHHHHHHHHHHHHHHHHH
Confidence 99999987 7888888999999999999999886
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.7e-09 Score=113.89 Aligned_cols=140 Identities=11% Similarity=0.017 Sum_probs=116.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHHh
Q psy2962 186 WYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLAL 265 (690)
Q Consensus 186 ~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i~ 265 (690)
...++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.|++.+...+....++.
T Consensus 259 ~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 338 (417)
T 2cfq_A 259 RVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYIT 338 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788888888999999999999999999999999888888888888888888888888899888877788889999
Q ss_pred hhcCCCcchhhhhH-HHHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHH-HhcCc
Q psy2962 266 EMVGPSKRIIAGTV-IHMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAYWW-FIPES 325 (690)
Q Consensus 266 e~~~~~~R~~~~~~-~~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~~~-~lpes 325 (690)
|.+|++.|+.+.++ ++....+|.+++|.+++.+. +++..|.+.++..++..+..+ +.||.
T Consensus 339 ~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~ 403 (417)
T 2cfq_A 339 SQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCS
T ss_pred HHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 99999999999888 58888999999999988763 567788887777666654433 35554
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.5e-07 Score=104.28 Aligned_cols=112 Identities=16% Similarity=-0.014 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 423 NIYLNFIISGMVEIPAYLSSMLTLDRY-GRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGKFFITGAYGAVYIF 501 (690)
Q Consensus 423 ~~~~~~~~~~l~~i~~~~~~~~l~dr~-grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 501 (690)
..........+..+++.++.|++.||+ |||+++..+.++.+++.++..+.+. +.+..++..++.+++.+...+...++
T Consensus 55 ~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~~~~~ 133 (524)
T 2xut_A 55 VAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEH-SVQGFYTGLFLIALGSGGIKPLVSSF 133 (524)
T ss_dssp THHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhccccchhHHHH
Confidence 355666677788889999999999999 9999999999988888888777651 24555566677778888888999999
Q ss_pred hhcccchHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q psy2962 502 SAEQFPTVIRNIGIGA---GSTFARVGGIFASYTSVL 535 (690)
Q Consensus 502 ~~e~~p~~~r~~~~g~---~~~~~~lg~~i~p~i~~~ 535 (690)
+.|.+|++.|+.+.+. .+....+|.+++|.+.+.
T Consensus 134 ~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~ 170 (524)
T 2xut_A 134 MGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPL 170 (524)
T ss_dssp HHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTH
T ss_pred HHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999766555 888899999999988775
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=6e-07 Score=98.41 Aligned_cols=107 Identities=15% Similarity=0.049 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcC----------------CChhHHHHHHHHHHHHHHH
Q psy2962 429 IISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLP----------------LDLNTVSIVLAMMGKFFIT 492 (690)
Q Consensus 429 ~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~----------------~~~~~~~~~~~~l~~~~~~ 492 (690)
....++.++|.++.|+++||+|||+++.++.++..++.++.++.+ ..+.+..++.-++.+++.+
T Consensus 62 s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G 141 (491)
T 4gc0_A 62 ASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVG 141 (491)
T ss_dssp HTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 344567789999999999999999999999999988888877532 1234556667788889999
Q ss_pred HHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 493 GAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 493 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
+..++..++++|..|++.|+...++.+....+|.++++.+...
T Consensus 142 ~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~ 184 (491)
T 4gc0_A 142 LASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYF 184 (491)
T ss_dssp HHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchh
Confidence 9999999999999999999999999999999998888877654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 690 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 3e-14 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 3e-07 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 72.8 bits (177), Expect = 3e-14
Identities = 40/350 (11%), Positives = 93/350 (26%), Gaps = 37/350 (10%)
Query: 196 MMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPD----FWTFTACRLIVGA 251
+ I G +SDR + +++ F P + G
Sbjct: 69 SIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGW 128
Query: 252 STSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV----HDWRHLDIL 307
+ + +R +V + ++G + L +DW +
Sbjct: 129 FQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYM 188
Query: 308 VTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSPE 367
++ + + + EE K +
Sbjct: 189 PAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDY----------------------PDD 226
Query: 368 EEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNTANLGG----N 423
EK + + + + + + L+ ++ F++ + +
Sbjct: 227 YNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK 286
Query: 424 IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNT---VS 480
+ + IP L D+ R N + L I + + ++ V
Sbjct: 287 SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVD 346
Query: 481 IVLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIFAS 530
++ ++ F I G + + + E P G F +GG A+
Sbjct: 347 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAA 396
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 50.9 bits (120), Expect = 3e-07
Identities = 37/347 (10%), Positives = 77/347 (22%), Gaps = 44/347 (12%)
Query: 193 AFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIV--- 249
A + + LL +FG +SD+ G + + I M V L+
Sbjct: 50 AAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIV 109
Query: 250 ---GASTSGVFLVAYVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFVHDWRHLDI 306
V A + MF +G+ L A + + + +
Sbjct: 110 GGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFV 169
Query: 307 LVTLPGLIYLAYWWFIPESARWLISKGRNEEAKLIIQAVAEENKVILEGFVLDGLLAPSP 366
G + F + +
Sbjct: 170 FWLGSGCALILAVLLF---------------------------------FAKTDAPSSAT 196
Query: 367 EEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSWNTANLGGNIYL 426
+ ELFR P L+ S+ + + + + +
Sbjct: 197 VANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQ 256
Query: 427 NFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALL-----PLDLNTVSI 481
+ G V L + + L + ++ +
Sbjct: 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVV 316
Query: 482 VLAMMGKFFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVGGIF 528
+L + F + + + QF F + +
Sbjct: 317 ILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI 363
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 690 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.97 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.91 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.07 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.03 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=2.6e-29 Score=271.50 Aligned_cols=328 Identities=12% Similarity=0.078 Sum_probs=235.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhcc----ccHHHHHHHHHHHHhhhhhhHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFA----PDFWTFTACRLIVGASTSGVFLVA 260 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s----~s~~~l~~~R~l~G~~~g~~~~~~ 260 (690)
..+.|++.+++.++++++++++|+++||+|||++++++.++.+++.++++++ ++++.++++|++.|++.+...+..
T Consensus 58 ~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 137 (447)
T d1pw4a_ 58 RGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC 137 (447)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHH
Confidence 6789999999999999999999999999999999999999999999988876 477899999999999999999999
Q ss_pred HHHHhhhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHh----hhchHHHHHHHHHHHHHHHH-HHHhcCchhHHHhcCCH
Q psy2962 261 YVLALEMVGPSKRIIAGTVIHMFFSIGFLLIAGLAYFV----HDWRHLDILVTLPGLIYLAY-WWFIPESARWLISKGRN 335 (690)
Q Consensus 261 ~~~i~e~~~~~~R~~~~~~~~~~~~lG~~l~~~l~~~l----~~Wr~~~~i~~i~~ll~~~~-~~~lpesp~~l~~~~~~ 335 (690)
..++.|++|+++|++++++.+.+..+|.++++.++..+ .+||+.+++.+++.++..+. +++++|+|+.......
T Consensus 138 ~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 216 (447)
T d1pw4a_ 138 GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI- 216 (447)
T ss_dssp HHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-
T ss_pred HHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchh-
Confidence 99999999999999999999999999999998877664 47999999988887776544 4455666542110000
Q ss_pred HHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHH-HHHHHHHh
Q psy2962 336 EEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVC-SLTYYGLS 414 (690)
Q Consensus 336 ~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~-~~~~~~~~ 414 (690)
++..++..+ ...++.+.+....+...+.+++++.++......++.+... ....+...
T Consensus 217 -------------------~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (447)
T d1pw4a_ 217 -------------------EEYKNDYPD---DYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPT 274 (447)
T ss_dssp -------------------TTTCCC----------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------hhhhhhccc---chhhccccccchhhHHHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhh
Confidence 000000000 0001111112223334566788887777666555554433 34444555
Q ss_pred hccCCCCch---HHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHH---HHHhcCCChhHHHHHHHHHHH
Q psy2962 415 WNTANLGGN---IYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLI---VSALLPLDLNTVSIVLAMMGK 488 (690)
Q Consensus 415 ~~~~~l~~~---~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l---~~~~~~~~~~~~~~~~~~l~~ 488 (690)
+..+..+.+ ......+..+..+++.++.+++.||++|+...........+... ........+.+...+..++.+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 354 (447)
T d1pw4a_ 275 YLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG 354 (447)
T ss_dssp HBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHH
T ss_pred hcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 555555533 44555666778889999999999999987654433333222222 222223344555556666667
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy2962 489 FFITGAYGAVYIFSAEQFPTVIRNIGIGAGSTFARVG-GIFASYTSVL 535 (690)
Q Consensus 489 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~lg-~~i~p~i~~~ 535 (690)
++..+..+....+..|.+|++.|+++.|+.+++++++ .+++|.+.++
T Consensus 355 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~ 402 (447)
T d1pw4a_ 355 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGY 402 (447)
T ss_dssp HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777778888999999999999999999999998875 5668888876
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=1.3e-22 Score=214.48 Aligned_cols=345 Identities=15% Similarity=0.067 Sum_probs=231.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHH----HHHHHHHHhhhhhhHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTF----TACRLIVGASTSGVFLVA 260 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l----~~~R~l~G~~~g~~~~~~ 260 (690)
..+.|++.+++.++.+++++++|+++||+|||++++++.++..++.++..+..+.... ++.+++.+.+.+......
T Consensus 42 ~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (417)
T d1pv7a_ 42 KSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAG 121 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccch
Confidence 6899999999999999999999999999999999999999999999888887766553 445555555555544444
Q ss_pred HHHHhhhcCC--CcchhhhhHHHHHHHHHHHHHHHHHHHhh--hchHHHHHHHHHHHH-HHHHHHHhcCchhHHHhcCCH
Q psy2962 261 YVLALEMVGP--SKRIIAGTVIHMFFSIGFLLIAGLAYFVH--DWRHLDILVTLPGLI-YLAYWWFIPESARWLISKGRN 335 (690)
Q Consensus 261 ~~~i~e~~~~--~~R~~~~~~~~~~~~lG~~l~~~l~~~l~--~Wr~~~~i~~i~~ll-~~~~~~~lpesp~~l~~~~~~ 335 (690)
.....+..++ +++.+..+........|..+++.++..+. +|+..+........+ ..+..+.++|+|+.. .+.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 198 (417)
T d1pv7a_ 122 APAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSA---TVA 198 (417)
T ss_dssp HHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSS---CSS
T ss_pred hhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHHHHHHHHHHhcccccch---hhh
Confidence 4444443332 34556677788888888899998888874 455555555544444 445555566665311 000
Q ss_pred HHHHHHHHHHHHHcCCcchhhhhhcccCCCchHHHHhhhhcCCCCccchhhccCcHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2962 336 EEAKLIIQAVAEENKVILEGFVLDGLLAPSPEEEEKLKAQNDGPKPSIFELFRHPNLFKKSVIIFFLWFVCSLTYYGLSW 415 (690)
Q Consensus 336 ~ea~~~l~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 415 (690)
+ ++.+.+.+.......+.++.+..+...+..................
T Consensus 199 ~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (417)
T d1pv7a_ 199 N---------------------------------AVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFAN 245 (417)
T ss_dssp H---------------------------------HHHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h---------------------------------hhhhhcccccccccccccccccccchhhhhHHHHHHHHhhhccccc
Confidence 0 1111111112222334444454444444433333332222222221
Q ss_pred cc----CCCCc---hHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q psy2962 416 NT----ANLGG---NIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPLDLNTVSIVLAMMGK 488 (690)
Q Consensus 416 ~~----~~l~~---~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~l~~ 488 (690)
.. ...+. ..........+..+++..+.+++.||.++|+.+..+.++.+++++.+.+.++ .+..++..++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~g 323 (417)
T d1pv7a_ 246 FFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS--ALEVVILKTLHM 323 (417)
T ss_dssp HHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCC--HHHHHHHHHHHH
T ss_pred cccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccc--cchhhHHHHHHH
Confidence 11 11111 1233445556777888999999999999999999999998888887777654 556666677778
Q ss_pred HHHHHHHHHHHHHhhcccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHccccccccCccccccccccccchhhccccCCC
Q psy2962 489 FFITGAYGAVYIFSAEQFPTVIRNIGIGAGS-TFARVGGIFASYTSVLEAFPLSYLGTSFEYYNSSTITKKCLITYKTMP 567 (690)
Q Consensus 489 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~-~~~~lg~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (690)
++.+...+....+..|.+|++.|+++.|+.. +...+|.+++|.+.|+.. +
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~------~----------------------- 374 (417)
T d1pv7a_ 324 FEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMY------E----------------------- 374 (417)
T ss_dssp HHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHH------H-----------------------
T ss_pred HHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H-----------------------
Confidence 8888899999999999999999999999865 556799999999988721 1
Q ss_pred cchhhccccchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHhh-hccCCC
Q psy2962 568 KEQITRYGVTVILIDQVFLLQVEIWLPLPFLMFGVLSLTAGILSL-ILPETH 618 (690)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~lpet~ 618 (690)
..+....+++.+++++++.++.+ ++++++
T Consensus 375 ----------------------~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~ 404 (417)
T d1pv7a_ 375 ----------------------SIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp ----------------------HHCHHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred ----------------------HHCHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 45667788888888887777765 454443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=2.2e-09 Score=113.32 Aligned_cols=114 Identities=16% Similarity=0.111 Sum_probs=95.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 422 GNIYLNFIISGMVEIPAYLSSMLTLDRYGRKNFLCPCLILSGLCLIVSALLPL--DLNTVSIVLAMMGKFFITGAYGAVY 499 (690)
Q Consensus 422 ~~~~~~~~~~~l~~i~~~~~~~~l~dr~grr~~l~~~~~~~~i~~l~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~ 499 (690)
.+..+......++..++.++.|+++||+|||+++..+.++.+++.++..+.+. ...+..++..++.+++.+..++...
T Consensus 59 ~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 138 (447)
T d1pw4a_ 59 GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCG 138 (447)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHH
Confidence 34667777788888999999999999999999999999998888887766531 1234455666777788888889999
Q ss_pred HHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2962 500 IFSAEQFPTVIRNIGIGAGSTFARVGGIFASYTSVL 535 (690)
Q Consensus 500 ~~~~e~~p~~~r~~~~g~~~~~~~lg~~i~p~i~~~ 535 (690)
.++.|.+|++.|+.++|+.+....+|.+++|.+.+.
T Consensus 139 ~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~ 174 (447)
T d1pw4a_ 139 RTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL 174 (447)
T ss_dssp HHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred HHHHHHHHhhcccccccccccccchhhhhhhhhhhh
Confidence 999999999999999999999999999999987765
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=6.9e-10 Score=115.11 Aligned_cols=138 Identities=12% Similarity=0.028 Sum_probs=122.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHhhccccCCcHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy2962 185 AWYRGTSDAFLMMGVLLGSLIFGDISDRFGRKPTFMISILIMDVFGTLAAFAPDFWTFTACRLIVGASTSGVFLVAYVLA 264 (690)
Q Consensus 185 ~~~~gli~s~~~lg~~ig~~~~G~lsDr~Grr~~ll~~~~l~~i~~~~~~~s~s~~~l~~~R~l~G~~~g~~~~~~~~~i 264 (690)
....+...+...++..++.++.+++.||+|||+.+.++.++.+++.++..+.++.+.+++..++.|++.+...+....++
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 337 (417)
T d1pv7a_ 258 TRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYI 337 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCcchhhhhHH-HHHHHHHHHHHHHHHHHhh---hchHHHHHHHHHHHHHHHHHHHh
Q psy2962 265 LEMVGPSKRIIAGTVI-HMFFSIGFLLIAGLAYFVH---DWRHLDILVTLPGLIYLAYWWFI 322 (690)
Q Consensus 265 ~e~~~~~~R~~~~~~~-~~~~~lG~~l~~~l~~~l~---~Wr~~~~i~~i~~ll~~~~~~~l 322 (690)
.|.+|+++|+++.++. +....+|.+++|.+++.+. ||+..+++.++..++..+..+++
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 399 (417)
T d1pv7a_ 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp HHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999974 6678899999999888774 68999998888877765544443
|