Psyllid ID: psy2988

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180----
Protein Sequence
MEQLQRPEHAAWVTWLSVDFYFTAYYTFRVLFVHTGPCISLVVRNLLFWQHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAVQVGRRNGGGSSRYSLVNGPRTCTNETVL
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccEEEEEcccccccccccc
Coil and Loop (DISEMBL)
meqlqrpehaAWVTWLSVDFYFTAYYTFRVLFVHTGPCISLVVRNLLFWQHKRDKLFKENkkseckrlrdsnctTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAVQvgrrngggssryslvngprtctnetvl
Flexible Loop (DISEMBL)
meqlqrpehaawVTWLSVDFYFTAYYTFRVLFVHTGPCISLVVRNLLFWQHKRDKlfkenkkseckrlrdsncttLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAvqvgrrngggssryslvngprtctnetvl
Low Complexity Region (SEG)
MEQLQRPEHAAWVTWLSVDFYFTAYYTFRVLFVHTGPCISLVVRNLLFWQHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAVQVgrrngggssrysLVNGPRTCTNETVL
Disordered region (IsUnstruct)
*********AAWVTWLSVDFYFTAYYTFRVLFVHTGPCISLVVRNLLFWQHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAVQVGR************************
Disordered Region (DISOPRED)
**QLQRPEHAAWVTWLSVDFYFTAYYTFRVLFVHTGPCISLVVRNLLFWQ**************************MLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIR*******************************
Disordered Region (DISEMBL)
MEQLQRPEHAAWVTWLSVDFYFTAYYTFRVLFVHTGPCISLVVRNLLFWQHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAVQVGRRNGGGSSRYSLVNGPRTCTNETVL
Disordered Region (DISPRO)
*EQLQRPEHAAWVTWLSVDFYFTAYYTFRVLFVHTGPCISLVVRNLLFWQHKRDKLFKENKKS****LRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAVQVGRRNGGGSSRYSLVNGPRTC******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEQLQRPEHAAWVTWLSVDFYFTAYYTFRVLFVHTGPCISLVVRNLLFWQHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAVQVGRRNGGGSSRYSLVNGPRTCTNETVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
341575566	398	sex peptide receptor [Bemisia tabaci]	0.972	0.449	0.807	4e-78
193712541	398	PREDICTED: FMRFamide receptor-like [Acyr	0.972	0.449	0.780	4e-78
168823423	406	sex peptide receptor [Bombyx mori] gi|15	0.989	0.448	0.752	2e-72
357624630	423	sex peptide receptor [Danaus plexippus]	0.983	0.427	0.742	1e-70
449143233	421	sex peptide receptor [Spodoptera litura]	0.983	0.429	0.730	2e-70
383793872	424	sex peptide receptor [Helicoverpa assult	0.983	0.426	0.730	3e-70
341575564	399	sex peptide receptor [Lygus hesperus]	0.951	0.438	0.737	2e-69
307006411	424	sex peptide receptor [Helicoverpa armige	0.983	0.426	0.719	5e-69
270004837	388	hypothetical protein TcasGA2_TC002917 [T	0.940	0.445	0.702	2e-65
164698404	391	sex peptide receptor [Tribolium castaneu	0.940	0.442	0.702	2e-65

>gi|341575566|gb|AEK80440.1| sex peptide receptor [Bemisia tabaci]

 Score =  296 bits (757), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 151/187 (80%), Positives = 162/187 (86%), Gaps = 8/187 (4%)

Query: 6   RPEHAAWV-TWLSVDFYFTAYYTFRVLFVHTGPCISLVVRNLLFW------QHKRDKLFK 58
           R   AAWV   +S+D Y+T YY FRV+FVH GPCISLV  N+L +      Q KRDKLFK
Sbjct: 212 RVHDAAWVRDTVSLDVYYTMYYGFRVIFVHMGPCISLVALNVLLFRAMREAQLKRDKLFK 271

Query: 59  ENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLV 118
           EN+KSECKRLRDSNCTTLMLIVVVTVFL+ EIPLAVVTILH+ISSS+TEILDY  ANVLV
Sbjct: 272 ENRKSECKRLRDSNCTTLMLIVVVTVFLMTEIPLAVVTILHIISSSITEILDYTVANVLV 331

Query: 119 LFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAVQVGRRNG-GGSSRYSLVNGPRT 177
           LFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAVQV RRNG GGSSRYSLVNGPRT
Sbjct: 332 LFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAVQVTRRNGAGGSSRYSLVNGPRT 391

Query: 178 CTNETVL 184
           CTNET+L
Sbjct: 392 CTNETIL 398

Source: Bemisia tabaci

Species: Bemisia tabaci

Genus: Bemisia

Family: Aleyrodidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193712541|ref|XP_001944453.1| PREDICTED: FMRFamide receptor-like [Acyrthosiphon pisum]

 Score =  296 bits (757), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 146/187 (78%), Positives = 165/187 (88%), Gaps = 8/187 (4%)

Query: 6   RPEHAAWVT-WLSVDFYFTAYYTFRVLFVHTGPCISLVVRNLLFW------QHKRDKLFK 58
           R +HA WV  W+++D YFT YY FRV+FVHTGPCISLVV NLL +      Q KRDKLFK
Sbjct: 212 RMKHAYWVEHWVTLDVYFTLYYAFRVIFVHTGPCISLVVLNLLLFRAMRDAQLKRDKLFK 271

Query: 59  ENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLV 118
           EN+K+ECKRLRDSNCTTLMLIVVVTVFL+ EIPLAVVT+LH+ISSS+ EILDY  AN+LV
Sbjct: 272 ENRKNECKRLRDSNCTTLMLIVVVTVFLMTEIPLAVVTVLHIISSSIKEILDYSVANLLV 331

Query: 119 LFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAVQVGRRNG-GGSSRYSLVNGPRT 177
           LFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRG+VQ+ R++G GGSSRYSLVNGPRT
Sbjct: 332 LFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGSVQINRKHGAGGSSRYSLVNGPRT 391

Query: 178 CTNETVL 184
           CTNE++L
Sbjct: 392 CTNESLL 398

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|168823423|ref|NP_001108346.1| sex peptide receptor [Bombyx mori] gi|158991495|gb|ABW86946.1| sex peptide receptor [Bombyx mori]

 Score =  276 bits (707), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 143/190 (75%), Positives = 157/190 (82%), Gaps = 8/190 (4%)

Query: 1   MEQLQRPEHAAWVTWLSVDFYFTAYYTFRVLFVHTGPCISLVVRNLLFW------QHKRD 54
           +E++ R E A+WV  LSVD YF +Y+ FRVLFVH  PC SLVV N+L +      Q  R 
Sbjct: 219 VEEVCRIEMASWVKALSVDAYFISYFGFRVLFVHLIPCTSLVVLNVLLFRAMRTAQINRQ 278

Query: 55  KLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAA 114
           KLFKEN+KSECKRLRDSNCTTLMLIVVVTVFLLVEIP+AVVTILH+ISS++ EILDY  A
Sbjct: 279 KLFKENRKSECKRLRDSNCTTLMLIVVVTVFLLVEIPVAVVTILHIISSTIVEILDYHIA 338

Query: 115 NVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAVQVGRRNGGGSSRYSLVNG 174
           N+LVL TNFFIIVSYPINFAIYCGMSRQFRETFKELFIRG V    R  GGSSRYSLVNG
Sbjct: 339 NILVLVTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGTVT--SRKNGGSSRYSLVNG 396

Query: 175 PRTCTNETVL 184
           PRTCTNETVL
Sbjct: 397 PRTCTNETVL 406

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357624630|gb|EHJ75336.1| sex peptide receptor [Danaus plexippus]

 Score =  271 bits (692), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 141/190 (74%), Positives = 155/190 (81%), Gaps = 9/190 (4%)

Query: 1   MEQLQRPEHAAWVTWLSVDFYFTAYYTFRVLFVHTGPCISLVVRNLLFW------QHKRD 54
           ME +   E A WV  +S+D YF  Y+ FRVLFVH  PC SLVV N+L +      Q  R 
Sbjct: 237 MEHVCEVEIAPWVKTISLDAYFITYFAFRVLFVHLIPCTSLVVLNVLLFRAMRTAQINRQ 296

Query: 55  KLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAA 114
           KLFKEN+KSECKRLRDSNCTTLMLIVVVTVFL+VEIP+AVVTILH+ISS++ EILDY  A
Sbjct: 297 KLFKENRKSECKRLRDSNCTTLMLIVVVTVFLMVEIPVAVVTILHIISSTIVEILDYHIA 356

Query: 115 NVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAVQVGRRNGGGSSRYSLVNG 174
           N+L+L TNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAV    RN GGSSRYSLVNG
Sbjct: 357 NILILITNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAVTT--RN-GGSSRYSLVNG 413

Query: 175 PRTCTNETVL 184
           PRTCTNETVL
Sbjct: 414 PRTCTNETVL 423

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|449143233|gb|AGE92037.1| sex peptide receptor [Spodoptera litura]

 Score =  270 bits (690), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 138/189 (73%), Positives = 155/189 (82%), Gaps = 8/189 (4%)

Query: 2   EQLQRPEHAAWVTWLSVDFYFTAYYTFRVLFVHTGPCISLVVRNLLFW------QHKRDK 55
           E++ R E A WV  +S+D YF  YY FRVLFVH  PC SLVV N+L +      Q  R +
Sbjct: 235 EEVCRIEMAPWVQAISLDAYFITYYGFRVLFVHLIPCTSLVVLNVLLFRAMRTAQINRQR 294

Query: 56  LFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAAN 115
           LFKEN+KSEC++LRDSNCTTLMLIVVVTVFLLVEIP+AVVTILH+ISS++ EILDY  AN
Sbjct: 295 LFKENRKSECRKLRDSNCTTLMLIVVVTVFLLVEIPVAVVTILHIISSTIVEILDYYIAN 354

Query: 116 VLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAVQVGRRNGGGSSRYSLVNGP 175
           +L+L TNFFI+VSYPINFAIYCGMSRQFRETFKELFIRGAV    R  GGSSRYSLVNGP
Sbjct: 355 ILILITNFFILVSYPINFAIYCGMSRQFRETFKELFIRGAVT--SRKNGGSSRYSLVNGP 412

Query: 176 RTCTNETVL 184
           RTCTNETVL
Sbjct: 413 RTCTNETVL 421

Source: Spodoptera litura

Species: Spodoptera litura

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383793872|gb|AFH53182.1| sex peptide receptor [Helicoverpa assulta]

 Score =  270 bits (689), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 138/189 (73%), Positives = 155/189 (82%), Gaps = 8/189 (4%)

Query: 2   EQLQRPEHAAWVTWLSVDFYFTAYYTFRVLFVHTGPCISLVVRNLLFW------QHKRDK 55
           E++ R E A WV  +S+D YF  YY FRVLFVH  PC SLVV N+L +      Q  R +
Sbjct: 238 EEVCRIEMAPWVHAISLDAYFITYYGFRVLFVHLIPCTSLVVLNVLLFRAMRTAQINRQR 297

Query: 56  LFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAAN 115
           LFKEN+KSEC++LRDSNCTTLMLIVVVTVFLLVEIP+AVVTILH+ISS++ EILDY  AN
Sbjct: 298 LFKENRKSECRKLRDSNCTTLMLIVVVTVFLLVEIPVAVVTILHIISSTIVEILDYYIAN 357

Query: 116 VLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAVQVGRRNGGGSSRYSLVNGP 175
           +L+L TNFFI+VSYPINFAIYCGMSRQFRETFKELFIRGAV    R  GGSSRYSLVNGP
Sbjct: 358 ILILITNFFILVSYPINFAIYCGMSRQFRETFKELFIRGAVT--SRKNGGSSRYSLVNGP 415

Query: 176 RTCTNETVL 184
           RTCTNETVL
Sbjct: 416 RTCTNETVL 424

Source: Helicoverpa assulta

Species: Helicoverpa assulta

Genus: Helicoverpa

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|341575564|gb|AEK80439.1| sex peptide receptor [Lygus hesperus]

 Score =  267 bits (682), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 135/183 (73%), Positives = 152/183 (83%), Gaps = 8/183 (4%)

Query: 10  AAWVT-WLSVDFYFTAYYTFRVLFVHTGPCISLVVRNLLFW------QHKRDKLFKENKK 62
           A W+   L+ D Y+T Y+ FRV+FVH  PCISLV  NLL +      Q KR+KLFKEN+K
Sbjct: 217 ADWIEHGLTPDVYYTIYFLFRVIFVHALPCISLVALNLLLFKALRKAQIKRNKLFKENRK 276

Query: 63  SECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTN 122
            +CK+LRDSNCTTLMLIVVVTVFL  EIPLAVVT+LH+ISSS+ EILDY  AN+L+LFTN
Sbjct: 277 GDCKKLRDSNCTTLMLIVVVTVFLFTEIPLAVVTVLHIISSSIKEILDYHVANILILFTN 336

Query: 123 FFIIVSYPINFAIYCGMSRQFRETFKELFIRGAVQVGR-RNGGGSSRYSLVNGPRTCTNE 181
           FFII+SYPINFAIYCGMSRQFRETFKELFIRGAVQ  R RNG GSS+YSLVNGPRT TNE
Sbjct: 337 FFIILSYPINFAIYCGMSRQFRETFKELFIRGAVQATRGRNGAGSSKYSLVNGPRTSTNE 396

Query: 182 TVL 184
           TVL
Sbjct: 397 TVL 399

Source: Lygus hesperus

Species: Lygus hesperus

Genus: Lygus

Family: Miridae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307006411|gb|ADK79103.2| sex peptide receptor [Helicoverpa armigera]

 Score =  265 bits (678), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 136/189 (71%), Positives = 154/189 (81%), Gaps = 8/189 (4%)

Query: 2   EQLQRPEHAAWVTWLSVDFYFTAYYTFRVLFVHTGPCISLVVRNLLFW------QHKRDK 55
           E++ R E A WV  +S+D YF  YY FRVLFVH  PC SLVV N+L +      Q  R +
Sbjct: 238 EEVCRIEMAPWVHAISLDAYFITYYGFRVLFVHLIPCTSLVVLNVLLFRAMRTAQINRQR 297

Query: 56  LFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAAN 115
           LFKEN+KSEC++ RDS+CTTLMLIVVVTVFLLVEIP+AVVTILH+ISS++ EILDY  AN
Sbjct: 298 LFKENRKSECRKPRDSDCTTLMLIVVVTVFLLVEIPVAVVTILHIISSTIVEILDYYIAN 357

Query: 116 VLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAVQVGRRNGGGSSRYSLVNGP 175
           +L+L TNFFI+VSYPINFAIYCGMSRQFRETFKELFIRGAV    R  GGSSRYSLVNGP
Sbjct: 358 ILILITNFFILVSYPINFAIYCGMSRQFRETFKELFIRGAVT--SRKNGGSSRYSLVNGP 415

Query: 176 RTCTNETVL 184
           RTCTNETVL
Sbjct: 416 RTCTNETVL 424

Source: Helicoverpa armigera

Species: Helicoverpa armigera

Genus: Helicoverpa

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270004837|gb|EFA01285.1| hypothetical protein TcasGA2_TC002917 [Tribolium castaneum]

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 130/185 (70%), Positives = 152/185 (82%), Gaps = 12/185 (6%)

Query: 8   EHAAWVT-WLSVDFYFTAYYTFRVLFVHTGPCISLVVRNLLFW------QHKRDKLF-KE 59
           EHA WV  +++ DFYF  Y+ FRVLFVH  PC++LV+ N+L +      Q +R++L  K+
Sbjct: 208 EHAHWVKEYVTEDFYFVTYFMFRVLFVHLIPCVALVILNILLFRALKQAQQRREQLLSKK 267

Query: 60  NKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVL 119
           N+K+ECK+LRDSNCTTLMLIVVVTVFL+VEIPL VVT+LH+ISS+  E LDY  AN L+L
Sbjct: 268 NQKNECKKLRDSNCTTLMLIVVVTVFLIVEIPLVVVTLLHIISSTFIEFLDYYVANTLIL 327

Query: 120 FTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAVQVGRRNGGGSSRYSLVNGPRTCT 179
           FTNFFII+SYPINFAIYCGMSRQFRETFKELFIRGAV    RN  GSSRYSLVNGPRTCT
Sbjct: 328 FTNFFIILSYPINFAIYCGMSRQFRETFKELFIRGAVTT--RN--GSSRYSLVNGPRTCT 383

Query: 180 NETVL 184
           NETVL
Sbjct: 384 NETVL 388

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|164698404|ref|NP_001106940.1| sex peptide receptor [Tribolium castaneum] gi|158991497|gb|ABW86947.1| sex peptide receptor [Tribolium castaneum] gi|184161657|gb|ACC68841.1| G-protein coupled receptor [Tribolium castaneum]

 Score =  253 bits (647), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 130/185 (70%), Positives = 152/185 (82%), Gaps = 12/185 (6%)

Query: 8   EHAAWVT-WLSVDFYFTAYYTFRVLFVHTGPCISLVVRNLLFW------QHKRDKLF-KE 59
           EHA WV  +++ DFYF  Y+ FRVLFVH  PC++LV+ N+L +      Q +R++L  K+
Sbjct: 211 EHAHWVKEYVTEDFYFVTYFMFRVLFVHLIPCVALVILNILLFRALKQAQQRREQLLSKK 270

Query: 60  NKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVL 119
           N+K+ECK+LRDSNCTTLMLIVVVTVFL+VEIPL VVT+LH+ISS+  E LDY  AN L+L
Sbjct: 271 NQKNECKKLRDSNCTTLMLIVVVTVFLIVEIPLVVVTLLHIISSTFIEFLDYYVANTLIL 330

Query: 120 FTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAVQVGRRNGGGSSRYSLVNGPRTCT 179
           FTNFFII+SYPINFAIYCGMSRQFRETFKELFIRGAV    RN  GSSRYSLVNGPRTCT
Sbjct: 331 FTNFFIILSYPINFAIYCGMSRQFRETFKELFIRGAVTT--RN--GSSRYSLVNGPRTCT 386

Query: 180 NETVL 184
           NETVL
Sbjct: 387 NETVL 391

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	184
FB|FBgn0029768	435	SPR "Sex peptide receptor" [Dr	0.940	0.397	0.564	1.1e-50
WB|WBGene00010986	527	sprr-1 [Caenorhabditis elegans	0.554	0.193	0.401	1.9e-19
WB|WBGene00009629	451	sprr-2 [Caenorhabditis elegans	0.804	0.328	0.375	7.8e-19
WB|WBGene00016428	429	dmsr-7 [Caenorhabditis elegans	0.711	0.305	0.310	2.8e-09
WB|WBGene00017038	379	dmsr-4 [Caenorhabditis elegans	0.603	0.292	0.295	2.9e-09
WB|WBGene00007951	483	dmsr-8 [Caenorhabditis elegans	0.679	0.258	0.318	1.2e-08
FB|FBgn0264002	488	DmsR-2 "Dromyosuppressin recep	0.510	0.192	0.32	9e-08
FB|FBgn0035331	478	DmsR-1 "Dromyosuppressin recep	0.489	0.188	0.308	1.4e-07
WB|WBGene00012962	401	dmsr-5 [Caenorhabditis elegans	0.483	0.221	0.329	9.1e-06
WB|WBGene00022086	465	sprr-3 [Caenorhabditis elegans	0.461	0.182	0.306	2.5e-05

FB|FBgn0029768 SPR "Sex peptide receptor" [Drosophila melanogaster (taxid:7227)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 105/186 (56%), Positives = 133/186 (71%)

Query:     8 EHAAWV-TWLSVDFYFTAYYTFRVLFVHTGPCISLVVRNLLFW------QHKRDKLFKEN 60
             E + WV  ++ VD Y+T+YY FRVLFVH  PCI LV  N+L +      Q +R  LF+EN
Sbjct:   254 ETSMWVHDYIGVDLYYTSYYLFRVLFVHLLPCIILVTLNILLFAAMRQAQERRKLLFREN 313

Query:    61 KKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLF 120
             +K ECK+LR++NCTTLMLIVVV+VFLL EIP+AVVT +H++SS + E LDY  AN+ ++ 
Sbjct:   314 RKKECKKLRETNCTTLMLIVVVSVFLLAEIPIAVVTAMHIVSSLIIEFLDYGLANICIML 373

Query:   121 TNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAVQVXXXXXXXXXXXXLVNGPRTCTN 180
             TNFF++ SYPINF IYCGMSRQFRETFKE+F+ G +              +VNG RTCTN
Sbjct:   374 TNFFLVFSYPINFGIYCGMSRQFRETFKEIFL-GRLMAKKDSSTKYS---IVNGARTCTN 429

Query:   181 --ETVL 184
               ETVL
Sbjct:   430 TNETVL 435

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0048042 "regulation of post-mating oviposition" evidence=IMP

GO:0008188 "neuropeptide receptor activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0045434 "negative regulation of female receptivity, post-mating" evidence=IMP

WB|WBGene00010986 sprr-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 215 (80.7 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
 Identities = 43/107 (40%), Positives = 68/107 (63%)

Query:    50 QHKRDKLFKENKK----SECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSV 105
             ++K  +LFK+       +E +R       T ML+VV+ +FL+ EIP A++  +HV+S S+
Sbjct:   278 ENKITRLFKQRDSVSVGNEPRRAHGLKQNTRMLVVVILLFLITEIPAALIFTIHVLSVSL 337

Query:   106 T-EILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELF 151
                 +DY   N+L++  N  I+VSYP  FAIYCGMS+QFR+  +++F
Sbjct:   338 KFSFVDYQFLNILLIVRNVLIVVSYPFRFAIYCGMSQQFRDVVRQMF 384

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00009629 sprr-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 232 (86.7 bits), Expect = 7.8e-19, P = 7.8e-19
 Identities = 59/157 (37%), Positives = 86/157 (54%)

Query:    11 AWVTWLSVDFYFTAYYTFRVLFVHTGPCISLVVRN-LLFW-----QHKRDKLFKENKKSE 64
             A +T +    YF  Y+  R L     P   LV+ N LL       Q ++ +L +E +  E
Sbjct:   231 AILTNMGQTVYFNIYFWTRALGFIILPSFLLVLLNGLLIKGIRRAQRRKLRLLREKRSEE 290

Query:    65 CKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVT---EILDYDAANVLVLFT 121
               R RDSN T+LML+ +V++FL+V +P A+   L  +  + T    IL+     V ++ +
Sbjct:   291 AARQRDSNSTSLMLVAIVSIFLIVNLPQAIFMGLLCVCETFTIKIPILEGTFPAVFLIAS 350

Query:   122 NFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAVQV 158
             N  +I +YPINF IYC MS  FR+TFK LF  GA Q+
Sbjct:   351 NMIVIATYPINFGIYCFMSSSFRQTFKLLFCPGASQL 387

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00016428 dmsr-7 [Caenorhabditis elegans (taxid:6239)]

 Score = 144 (55.7 bits), Expect = 2.8e-09, P = 2.8e-09
 Identities = 46/148 (31%), Positives = 79/148 (53%)

Query:    12 WVTWLSVDFYFTAYYTFRVLFVHTGPCISLVVRNLLFWQHKRDKLFK--ENKKSECKRLR 69
             W  W+ +   F       ++F+  G  +S + R+    +H+R KL     N  ++ K L+
Sbjct:   224 WNIWM-IGILFKIIPCILLIFLSFG-LVSKI-RDAE--KHRR-KLTSVPSNASTDSKPLK 277

Query:    70 DSNCT----TLMLIVVVTVFLLVEIPLAVVTILHVI-SSSVTEILDYDAANVLVLFTNFF 124
               N T    TLML+V++ VFL+ E P  +++IL  I ++ V   L +   +VL L +   
Sbjct:   278 KKNGTSDRTTLMLVVILLVFLITEFPQGIISILCAIFTTDVHRYLYFYIGDVLDLLS--- 334

Query:   125 IIVSYPINFAIYCGMSRQFRETFKELFI 152
              +V+  +NF +YC MS ++R+TF E+ I
Sbjct:   335 -LVNSSVNFVLYCVMSSRYRQTFWEVII 361

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00017038 dmsr-4 [Caenorhabditis elegans (taxid:6239)]

 Score = 143 (55.4 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 34/115 (29%), Positives = 66/115 (57%)

Query:    39 ISLVVRNLLFWQHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTIL 98
             I+LVV+ L     KR+ L+ ++ +   K+    + TT MLI+++ VFL+ E+P   + +L
Sbjct:   241 IALVVK-LRQTDEKRNYLYSKSFRKHVKKTTVPDRTTYMLIIMLVVFLVTELPQGFLALL 299

Query:    99 HVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIR 153
             + + +    I  Y   + L+   +F  +++  ++F +YC MS ++R+TF  + IR
Sbjct:   300 NGLYTGDVNIYIYKNLSELL---DFLSLINCSVDFLLYCVMSSRYRQTFGHMLIR 351

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00007951 dmsr-8 [Caenorhabditis elegans (taxid:6239)]

 Score = 139 (54.0 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 42/132 (31%), Positives = 68/132 (51%)

Query:    24 AYYTFRVLFVHTGPCISLVVRNLLFWQHKRD--KLFKENKKSECKRLRDSNCTTLMLIVV 81
             A++T  VLF    PC+ L    +      RD  K  K+  +   K+    + TT ML+ V
Sbjct:   211 AFWTNGVLF-KVVPCLLLTFSIVALVSIIRDVGKRRKQLAQVMNKKRMPRDHTTPMLVAV 269

Query:    82 VTVFLLVEIPLAVVTILHVISSSVTEILDYDAANV-LVLFTNFFIIVSYPINFAIYCGMS 140
             +++FL  E+P  V   LHV ++  T+   YD   + L    +   +++  +NF IYC MS
Sbjct:   270 LSIFLFAELPQGV---LHVFNAIFTKETFYDKIYIHLGDVMDVLSLLNSAVNFIIYCAMS 326

Query:   141 RQFRETFKELFI 152
             R+FR  F ++F+
Sbjct:   327 RKFRAVFIQIFL 338

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0264002 DmsR-2 "Dromyosuppressin receptor 2" [Drosophila melanogaster (taxid:7227)]

 Score = 131 (51.2 bits), Expect = 9.0e-08, P = 9.0e-08
 Identities = 32/100 (32%), Positives = 54/100 (54%)

Query:    55 KLFKENKKSECKRL---RDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDY 111
             K+    +   CK L   + ++ TT ML+ V+ +FL+ E P  ++ +L+V+      +  Y
Sbjct:   332 KVVTPTQPKSCKLLEKEKQTDRTTRMLLAVLLLFLVTEFPQGIMGLLNVLLGDAFFLQCY 391

Query:   112 DAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELF 151
                + L+   +   +++  INF +YC MSRQFR TF  LF
Sbjct:   392 LKLSDLM---DILALINSSINFILYCSMSRQFRSTFALLF 428

GO:0004930 "G-protein coupled receptor activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0008188 "neuropeptide receptor activity" evidence=ISS;IDA

GO:0035013 "myosuppressin receptor activity" evidence=IDA;NAS

GO:0045932 "negative regulation of muscle contraction" evidence=NAS

FB|FBgn0035331 DmsR-1 "Dromyosuppressin receptor 1" [Drosophila melanogaster (taxid:7227)]

 Score = 129 (50.5 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 29/94 (30%), Positives = 55/94 (58%)

Query:    58 KENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVL 117
             ++N K+  ++ + ++ TT ML+ V+ +FL+ E P  ++ +L+ +   V  +  Y   + L
Sbjct:   335 RKNSKT-LEKEKQTDRTTRMLLAVLLLFLITEFPQGIMGLLNAVLGDVFYLQCYLRLSDL 393

Query:   118 VLFTNFFIIVSYPINFAIYCGMSRQFRETFKELF 151
             +   +   +++  INF +YC MS+QFR TF  LF
Sbjct:   394 M---DILALINSSINFILYCSMSKQFRTTFTLLF 424

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS

GO:0004930 "G-protein coupled receptor activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0008188 "neuropeptide receptor activity" evidence=ISS;IDA

GO:0045932 "negative regulation of muscle contraction" evidence=NAS

GO:0035013 "myosuppressin receptor activity" evidence=IDA;NAS

WB|WBGene00012962 dmsr-5 [Caenorhabditis elegans (taxid:6239)]

 Score = 120 (47.3 bits), Expect = 9.1e-06, P = 9.1e-06
 Identities = 31/94 (32%), Positives = 51/94 (54%)

Query:    61 KKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDY-DAANVLVL 119
             K S+C R    + TTLMLI+++ VFL  E+P  +++IL  I  +    + Y +   VL L
Sbjct:   289 KVSQCSRNVSIDRTTLMLIIMLVVFLCTEMPQGLLSILSAIYPTHVHTMIYVNVGEVLDL 348

Query:   120 FTNFFIIVSYPINFAIYCGMSRQFRETFKELFIR 153
              +    +++   +F +YC MS  +R T K +  R
Sbjct:   349 MS----LINCLTSFIVYCVMSTTYRATVKSVLCR 378

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00022086 sprr-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 118 (46.6 bits), Expect = 2.5e-05, P = 2.5e-05
 Identities = 27/88 (30%), Positives = 50/88 (56%)

Query:    66 KRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVT-EILDYDAANVLVL--FTN 122
             K  + S  TT+ML V++ +++L  +P  ++ +L  +   ++   + ++  N + L  F N
Sbjct:   277 KNRKTSANTTIMLTVIIIIYMLARVPTTLLFLLVKLMDYISVPTIAFEVMNNIYLRVFAN 336

Query:   123 FFIIVSYPINFAIYCGMSRQFRETFKEL 150
                I  +PI+FAIY  MSR+FR + + L
Sbjct:   337 ITTISLHPISFAIYMFMSRKFRVSMRRL 364

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	184
pfam10324	317	pfam10324, 7TM_GPCR_Srw, Serpentine type 7TM GPCR	3e-05

>gnl|CDD|220692 pfam10324, 7TM_GPCR_Srw, Serpentine type 7TM GPCR chemoreceptor Srw

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 14/135 (10%)

Query: 25  YYTFRVLFVHTGPCISL-VVRNLLFWQ-HKRDKLFKENKKSECKRLRDSNCTTLMLIVVV 82
           Y     +     PCI L ++  LL  +  K  K  K    S  K  R    TT ++I + 
Sbjct: 192 YLLIDGIVSKIIPCILLPILTILLIIELRKAKKSRKNLSSSSNKSDR----TTKLVIFMT 247

Query: 83  TVFLLVEIPLAVVTILHVI---SSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGM 139
             F + E PL +  I+         +  IL Y    + V+F+    I +   +  I   M
Sbjct: 248 ISFFIAEFPLGISYIIQFFFYDDPGIRLILTY----LSVIFSLLLTINAI-SHCLICFLM 302

Query: 140 SRQFRETFKELFIRG 154
           S Q+R+T K+LF   
Sbjct: 303 SSQYRKTAKKLFGCK 317

Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Srw is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz. Length = 317

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	184
KOG4219|consensus	423		99.9
PHA03234	338	DNA packaging protein UL33; Provisional	99.87
PHA03235	409	DNA packaging protein UL33; Provisional	99.86
PHA02834	323	chemokine receptor-like protein; Provisional	99.85
PHA02638	417	CC chemokine receptor-like protein; Provisional	99.79
PHA03087	335	G protein-coupled chemokine receptor-like protein;	99.75
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	99.6
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	99.55
KOG4220|consensus	503		99.54
KOG2087|consensus	363		98.82
PF10323	283	7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept	98.41
PF05296	303	TAS2R: Mammalian taste receptor protein (TAS2R); I	98.37
PF10320	257	7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep	98.3
PF10321	313	7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept	98.16
PF10328	274	7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept	97.41
PF05462	303	Dicty_CAR: Slime mold cyclic AMP receptor	97.14
PF10317	292	7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept	96.94
PF10327	303	7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept	96.89
PF11970	76	Git3_C: G protein-coupled glucose receptor regulat	96.36
PF02101	405	Ocular_alb: Ocular albinism type 1 protein; InterP	95.65
KOG4193|consensus	610		95.41
PF03402	265	V1R: Vomeronasal organ pheromone receptor family,	95.22
PF10318	302	7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept	94.94
KOG4564|consensus	473		94.48
PF03125	365	Sre: C. elegans Sre G protein-coupled chemorecepto	94.18
PF10326	307	7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept	94.03
PF04789	305	DUF621: Protein of unknown function (DUF621); Inte	93.57
PF10322	307	7TM_GPCR_Sru: Serpentine type 7TM GPCR chemorecept	93.48
PF10319	310	7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept	91.79
PF02118	275	Srg: Srg family chemoreceptor; InterPro: IPR000609	85.37
KOG4220|consensus	503		83.93

>KOG4219|consensus

Probab=99.90  E-value=1.2e-23  Score=165.06  Aligned_cols=130  Identities=20%  Similarity=0.273  Sum_probs=109.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhcchhhHhhhhhccccchhhHHHHHHHHHHHhHHHHHHHHHHHh
Q psy2988          23 TAYYTFRVLFVHTGPCISLVVRNLLFW-QHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVI  101 (184)
Q Consensus        23 ~~y~~~~~~~~~~iP~~ii~~~y~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~  101 (184)
                      +.|...+.++.|++|++++.+.|..|. +++..+..++++.+...+.+.++|+.||+++|++.|.+||+||++..++...
T Consensus       207 ~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~~d~~~~~~kak~K~vkmliiVV~~FaicWlPyh~y~il~~~  286 (423)
T KOG4219|consen  207 QGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQQDRKHEQLKAKKKVVKMLIIVVVIFAICWLPYHIYFILNAT  286 (423)
T ss_pred             cceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccchhchhhHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHh
Confidence            458888889999999999999999999 5666666666555444566888999999999999999999999999998765


Q ss_pred             hccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHHHhcccc
Q psy2988         102 SSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGA  155 (184)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~  155 (184)
                      .   .+..+............+|++.|+|.||+||+++|++||.++++.|+++.
T Consensus       287 ~---~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr~cp  337 (423)
T KOG4219|consen  287 N---PEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFRWCP  337 (423)
T ss_pred             H---HHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhheee
Confidence            5   33344566677777889999999999999999999999999999998763

>PHA03234 DNA packaging protein UL33; Provisional

Probab=99.87  E-value=4.3e-21  Score=152.83  Aligned_cols=113  Identities=13%  Similarity=0.207  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhhhhhccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhccchh--
Q psy2988          30 VLFVHTGPCISLVVRNLLFWQHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTE--  107 (184)
Q Consensus        30 ~~~~~~iP~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~~~--  107 (184)
                      .++.|++|+++|+++|.+|.+..++.           +.++++|+++++++++++|++||+||+++.++.........  
T Consensus       202 ~~~~f~iPl~im~~cY~~I~~~L~~~-----------~~~~~~k~~k~i~~vv~vF~iCWlPy~iv~l~~~~~~~~~~~~  270 (338)
T PHA03234        202 CFIWGIFPTMIFSFFYVIFCKALHAL-----------TEKKHKKTLFFIRILILSFLCIQIPNIAILICEIAFLYIANNS  270 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh-----------hhhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCc
Confidence            34457999999999999998544321           11346789999999999999999999999876544311111  


Q ss_pred             hchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHHHhcc
Q psy2988         108 ILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIR  153 (184)
Q Consensus       108 ~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~  153 (184)
                      ............++.+++++|||+||+||++++++||+++++++..
T Consensus       271 c~~~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~FR~~~~~~~~~  316 (338)
T PHA03234        271 CFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLRFTACFQD  316 (338)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHH
Confidence            0111223445678889999999999999999999999998876643

>PHA03235 DNA packaging protein UL33; Provisional

Probab=99.86  E-value=5.2e-21  Score=155.70  Aligned_cols=121  Identities=11%  Similarity=0.247  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhhhhhccccchhhHHHHHHHHHHHhHHHHHHHHHHHhh
Q psy2988          23 TAYYTFRVLFVHTGPCISLVVRNLLFWQHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVIS  102 (184)
Q Consensus        23 ~~y~~~~~~~~~~iP~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~  102 (184)
                      ..|.++..++.|++|+++|+++|.+|.+..++..           .++++|+.+++++++++|++||+||+++.++..+.
T Consensus       202 ~~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~-----------~~~~~k~~~~v~iivv~F~iCWlPy~v~~l~~~~~  270 (409)
T PHA03235        202 STFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRAS-----------YKKRSRTLTFVCILLLSFLCLQTPFVAIMIFDSYA  270 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----------hhcchhhhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4577777888899999999999999995433211           12345778899999999999999999998876543


Q ss_pred             ccc-hhhc-hhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHHHhccc
Q psy2988         103 SSV-TEIL-DYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRG  154 (184)
Q Consensus       103 ~~~-~~~~-~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~  154 (184)
                      ... ..+. .......+..++.+++++|||+||+||++++++||+++++.+.+.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~~~~~l~~~  324 (409)
T PHA03235        271 TLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFLGNDFLKRFRQCFRGE  324 (409)
T ss_pred             HhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHhhHHHHHHHHHHHhhh
Confidence            211 1010 112234566788889999999999999999999999999988653

>PHA02834 chemokine receptor-like protein; Provisional

Probab=99.85  E-value=1.5e-20  Score=148.98  Aligned_cols=121  Identities=16%  Similarity=0.211  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhhhhhccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhc
Q psy2988          24 AYYTFRVLFVHTGPCISLVVRNLLFWQHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISS  103 (184)
Q Consensus        24 ~y~~~~~~~~~~iP~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~  103 (184)
                      .|.....++.|++|+++|+++|.+|.+..+++.           +++++|.+|++++++++|++||+||++..++..+.+
T Consensus       188 ~~~~~~~i~~f~iPl~ii~~~Y~~I~~~l~~~~-----------~~~~~k~~k~~~~vv~~F~icWlPy~i~~~l~~~~~  256 (323)
T PHA02834        188 FFNFEINIFGIVIPLIILIYCYSKILYTLKNCK-----------NKNKTRSIKIILTVVTFTVVFWVPFNIVLFINSLQS  256 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------CcccceEEeehhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            344455677899999999999999995443321           133568899999999999999999999988765542


Q ss_pred             cchhhch---hhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHHHhcccc
Q psy2988         104 SVTEILD---YDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGA  155 (184)
Q Consensus       104 ~~~~~~~---~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~  155 (184)
                      .......   .........++.+++++||++||+||++++++||+++++++++..
T Consensus       257 ~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~~~~~~  311 (323)
T PHA02834        257 VGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFKKVFKNMFCRTN  311 (323)
T ss_pred             hcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHHHHhcHHHHHHHHHHHHhhh
Confidence            1111111   111122345778899999999999999999999999999986544

>PHA02638 CC chemokine receptor-like protein; Provisional

Probab=99.79  E-value=1.7e-18  Score=141.40  Aligned_cols=121  Identities=12%  Similarity=0.104  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhhhhhccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhc
Q psy2988          24 AYYTFRVLFVHTGPCISLVVRNLLFWQHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISS  103 (184)
Q Consensus        24 ~y~~~~~~~~~~iP~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~  103 (184)
                      .+.+...++.+++|+++|++||.+|.+..++..           .++++|.+|+++.++++|++||+||+++.++..+..
T Consensus       272 ~~~~~~~i~~f~lPl~vmi~cY~~I~~~L~~~~-----------~~~k~k~~rli~~ivi~f~lcW~Py~i~~ll~~~~~  340 (417)
T PHA02638        272 ILQFEINILGMFIPIIIFAFCYIKIILKLKQLK-----------KSKKTKSIIIVSIIIICSLICWIPLNIVILFATMYS  340 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----------ccccchhhhhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            345555677799999999999999995443211           123567789999999999999999999988866542


Q ss_pred             cchh------hc-hhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHHHhcccc
Q psy2988         104 SVTE------IL-DYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGA  155 (184)
Q Consensus       104 ~~~~------~~-~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~  155 (184)
                      ....      .. ..........++..++++|||+||+||++.+++||+++++++++..
T Consensus       341 ~~~~~~~~~~~~c~~~~l~~~~~vt~~la~~~sclNPiIY~f~~~~FR~~l~~~~~~~~  399 (417)
T PHA02638        341 FKGFNSIISEHICGFIKLGYAMMLAEAISLTHCCINPLIYTLIGENFRMHLLMIFRNIF  399 (417)
T ss_pred             hhccccccccccccHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCHHHHHHHHHHHHHhc
Confidence            1110      00 0112334556788999999999999999999999999999885543

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=99.75  E-value=3.7e-17  Score=130.12  Aligned_cols=120  Identities=12%  Similarity=0.043  Sum_probs=89.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhhhhhccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhccch
Q psy2988          27 TFRVLFVHTGPCISLVVRNLLFWQHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVT  106 (184)
Q Consensus        27 ~~~~~~~~~iP~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~~  106 (184)
                      +...++.+++|++++.++|.++.+..++..          +.++++|++|++++++++|++||+|+++..++..+.....
T Consensus       205 ~~~~~~~~~lP~~ii~~~y~~i~~~l~~~~----------~~~~~~k~~k~l~~iv~~f~i~w~P~~i~~~~~~~~~~~~  274 (335)
T PHA03087        205 FEINIIGMLIPLTILLYCYSKILITLKGIN----------KSKKNKKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHF  274 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------cchhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            445667799999999999999984443321          1134678899999999999999999999877654321111


Q ss_pred             --hhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHHHhccccc
Q psy2988         107 --EILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAV  156 (184)
Q Consensus       107 --~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~  156 (184)
                        ..........+..+..+++.+|+++||+||++++++||++++++++....
T Consensus       275 ~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~~~~~~~~~~~  326 (335)
T PHA03087        275 KSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKHKKKSLKLMFT  326 (335)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHHHHHHHHHHhh
Confidence              11122334456667888999999999999999999999999999965543

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.60  E-value=1.8e-14  Score=114.03  Aligned_cols=130  Identities=25%  Similarity=0.417  Sum_probs=101.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhcchhhHhhhhhccccchhhHHHHHHHHHHHhHHHHHHHHHH
Q psy2988          21 YFTAYYTFRVLFVHTGPCISLVVRNLLFW-QHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILH   99 (184)
Q Consensus        21 ~~~~y~~~~~~~~~~iP~~ii~~~y~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~   99 (184)
                      ..+.|.+..+++..++|+++..++.+.++ ++++.++.++...++  +.+++.+++++++.+++.|+++.+|.++..++.
T Consensus       188 ~~~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~~~--~~~~~~~tt~li~~~ti~f~i~e~p~gi~~~~~  265 (318)
T PF10324_consen  188 FFRIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKKLSSS--KSKKSDRTTKLILFMTISFLISELPQGIIFLLE  265 (318)
T ss_pred             HHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhccccc--ccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567777788889999999999999888 344333332222211  146788999999999999999999999999997


Q ss_pred             HhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHHHhccc
Q psy2988         100 VISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRG  154 (184)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~  154 (184)
                      .+.+...  ........+..+.+.+..+|+++|++||+++|++||++++++++++
T Consensus       266 ~~~~~~~--~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t~~~~f~~k  318 (318)
T PF10324_consen  266 SFFEEDS--GLIFIIIQLSIIFNILITINSSIHFFICCFMSSQYRKTVKKLFGCK  318 (318)
T ss_pred             HHHhhhc--chhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHhccC
Confidence            7643222  2245566777788999999999999999999999999999999864

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=99.55  E-value=3.4e-14  Score=107.29  Aligned_cols=110  Identities=21%  Similarity=0.360  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hcc--hhhHhhhhhccccchhhHHHHHHHHHHHhHHHHHHHHH
Q psy2988          22 FTAYYTFRVLFVHTGPCISLVVRNLLFWQHKRDKLF-KEN--KKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTIL   98 (184)
Q Consensus        22 ~~~y~~~~~~~~~~iP~~ii~~~y~~i~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~l~~i~~~F~icw~P~~i~~~~   98 (184)
                      ...+.....++.+++|++++.++|.++.+..+++.. ...  .+...++.++++|.+++++.++++|++||+|+.+..++
T Consensus       145 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~  224 (257)
T PF00001_consen  145 SQIYFIYFFIVFFILPLIIILICYIRILRKLRRQRKRIKSQSSSSSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSLL  224 (257)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCTCCHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccCCceeHHHHH
Confidence            456888888888999999999999999943333222 211  12334456778899999999999999999999999888


Q ss_pred             HHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeeh
Q psy2988          99 HVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIY  136 (184)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY  136 (184)
                      ....+..    +. .......++.+++++|+++||++|
T Consensus       225 ~~~~~~~----~~-~~~~~~~~~~~l~~~~s~~nP~iY  257 (257)
T PF00001_consen  225 SVFSPSS----SL-ISSILFYISYFLAFLNSCLNPIIY  257 (257)
T ss_dssp             HHHSSTS----TC-SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCcc----ch-hhHHHHHHHHHHHHHHHhhCcEEC
Confidence            7766432    11 467778888999999999999998

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>KOG4220|consensus

Probab=99.54  E-value=1.4e-15  Score=120.19  Aligned_cols=84  Identities=18%  Similarity=0.265  Sum_probs=71.8

Q ss_pred             hccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHH
Q psy2988          69 RDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFK  148 (184)
Q Consensus        69 ~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~  148 (184)
                      .+|+|+++++..|.++|+++|.||.|+.++..++..       .....+-.+.-+|.|+||.+||++|.+.|+.||++++
T Consensus       410 ~rErKAAkTLsAILlAFIiTWtPYNImVlv~tFC~~-------CiP~tlW~~gYwLCYINSTiNP~CYALCNatFrkTfk  482 (503)
T KOG4220|consen  410 VRERKAAKTLSAILLAFILTWTPYNIMVLVNTFCKN-------CIPETLWTFGYWLCYINSTINPLCYALCNATFRKTFK  482 (503)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccceeeeehHhhccc-------ccchhHhhhhhheeeecccccHHHHHHHhHHHHHHHH
Confidence            778999999999999999999999999888766632       2245566677789999999999999999999999999


Q ss_pred             HHhcccccccC
Q psy2988         149 ELFIRGAVQVG  159 (184)
Q Consensus       149 ~~~~~~~~~~~  159 (184)
                      .++.|....+.
T Consensus       483 ~lL~Cr~~~~~  493 (503)
T KOG4220|consen  483 RLLLCRWKKRR  493 (503)
T ss_pred             Hhheeeecccc
Confidence            99988665443

>KOG2087|consensus

Probab=98.82  E-value=1.3e-10  Score=91.03  Aligned_cols=115  Identities=13%  Similarity=0.080  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhhhhhccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhcc
Q psy2988          25 YYTFRVLFVHTGPCISLVVRNLLFWQHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSS  104 (184)
Q Consensus        25 y~~~~~~~~~~iP~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~  104 (184)
                      |.+..++....+-+++|.++|+++....++........        ....++-...++..-++||.|.+++.+...+...
T Consensus       192 ~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~~~~~~--------~~~~akr~a~LvfTd~icw~Pi~f~~~~al~~~~  263 (363)
T KOG2087|consen  192 YYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDLSATLI--------STSVAKRMAFLVFTDCICWCPIAFFKFSALIGVE  263 (363)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCccccc--------hhhhhhCeeEEEEccccccCchheeeeHHhcCCc
Confidence            77777777788999999999999994333322211111        1355666777888999999999999887665533


Q ss_pred             chhhchh-hHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHHHhccc
Q psy2988         105 VTEILDY-DAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRG  154 (184)
Q Consensus       105 ~~~~~~~-~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~  154 (184)
                      ....... .....+.       =+|||+||++|.++++.||+.++.+..+.
T Consensus       264 li~~~~sk~llv~fl-------Plns~~NP~LYa~fT~~fk~d~~~l~~k~  307 (363)
T KOG2087|consen  264 LISVSYSKWLLVFFL-------PLNSCLNPFLYAFFTPVFKEDLFLLLSKV  307 (363)
T ss_pred             ccChhhceeEEEEEE-------EcccccCchhHHHcCHHHHHHHHHHHhhc
Confidence            2222111 1111122       24999999999999999999999888654

>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.41  E-value=1e-05  Score=63.25  Aligned_cols=112  Identities=12%  Similarity=0.148  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhhhhhccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhccchhhchhhH
Q psy2988          34 HTGPCISLVVRNLLFWQHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDA  113 (184)
Q Consensus        34 ~~iP~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~  113 (184)
                      ..+-++..+++|+.+....|++.. ...++.+++.++|.+++.+..+.++++++...=+...... ...      .+...
T Consensus       172 ~~~~cv~~iv~Y~~i~~~iRk~~k-~~s~~~s~~~~rE~~L~~~~~i~~~a~~~~~~~~~~~~~~-~~~------~~~~~  243 (283)
T PF10323_consen  172 VSVTCVICIVCYGIIFIFIRKRNK-KKSKSSSRSRRREIRLAIQVFILFCAFFVILVYYIFSNYF-AQN------FNTDP  243 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh-hhhHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc------ccchH
Confidence            455577888899999943333221 2233333455778888888877777766655544433222 211      11111


Q ss_pred             HHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHHHhcc
Q psy2988         114 ANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIR  153 (184)
Q Consensus       114 ~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~  153 (184)
                      ...+..+...+.-+.|.+||+.-.++|++.|+++.+.++|
T Consensus       244 ~~~~r~~y~~~~~~~s~inP~~LLi~n~~lr~~~~~~~~~  283 (283)
T PF10323_consen  244 IFYLRAFYPILNGLLSFINPWMLLIFNKDLRKQVRRMLKC  283 (283)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHhhhccHHHHHHHHHHcCC
Confidence            2223334555667789999999999999999999998876

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs)

Probab=98.37  E-value=7.4e-06  Score=64.62  Aligned_cols=122  Identities=9%  Similarity=0.062  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhh--hcchhhHhhhhhccccchhhHHHHHHHHHHHhHHHHHHHHHHH
Q psy2988          24 AYYTFRVLFVHTGPCISLVVRNLLFW-QHKRDKLF--KENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHV  100 (184)
Q Consensus        24 ~y~~~~~~~~~~iP~~ii~~~y~~i~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~  100 (184)
                      .+......+..++|++++.++...++ .++|+.+.  ...++.+..+.+...|++|+++...+.|+++++-..+...-..
T Consensus       179 ~~~~~~~~~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~~~ps~~aH~~a~k~~~sfl~ly~~~~~~~~~~~~~~~  258 (303)
T PF05296_consen  179 FYFFILFNLGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATGFRDPSTEAHIRAIKTMISFLILYIIYFLSLILSFLSFF  258 (303)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555889999999999999988 23333221  1122222234577888999988888888776655443211111


Q ss_pred             hhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHHHhcccc
Q psy2988         101 ISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGA  155 (184)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~  155 (184)
                      ..   .       ......+...+.++.|..+|++-.+-|++.|+++++++++.+
T Consensus       259 ~~---~-------~~~~~~~~~~i~~~yps~hs~iLIlgn~KLr~~~~~il~~~k  303 (303)
T PF05296_consen  259 FP---E-------NSIWFWVCEIIIALYPSGHSIILILGNPKLRQALLKILWCLK  303 (303)
T ss_pred             hc---c-------ccHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcC
Confidence            11   0       122334556668889999999999999999999999998753

TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane

>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.30  E-value=6.5e-06  Score=63.42  Aligned_cols=78  Identities=24%  Similarity=0.462  Sum_probs=60.9

Q ss_pred             hccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHH
Q psy2988          69 RDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFK  148 (184)
Q Consensus        69 ~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~  148 (184)
                      ++++|+.|.+.+.++.|+.+|.=-.+...+.....     .+.+....+.....+++.+|.+.|.++|.+.|++||++++
T Consensus       180 ~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v~~~~~-----~~~~~~~~i~~~~~i~v~~~~s~~ffV~~~~S~EYR~af~  254 (257)
T PF10320_consen  180 SRSKKVFKSLKVTVIIFIFSWFLSQIINTVSLALG-----LDGETIAIIQMYAGIFVNISYSQNFFVYYWRSSEYRKAFR  254 (257)
T ss_pred             hhHHHHHHHhhhheeeeeHHHHHHHHHHHHHHHhC-----CcHHHHHHHHHHHHHHHHHHHHHHheEEEEcCHHHHHHHH
Confidence            33677888899999999999988887776654332     2233345566677788999999999999999999999999


Q ss_pred             HHh
Q psy2988         149 ELF  151 (184)
Q Consensus       149 ~~~  151 (184)
                      +++
T Consensus       255 ~~~  257 (257)
T PF10320_consen  255 ELF  257 (257)
T ss_pred             HhC
Confidence            874

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []

Probab=98.16  E-value=2.8e-05  Score=61.52  Aligned_cols=115  Identities=8%  Similarity=0.107  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhcchhhHhhhhhccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhc
Q psy2988          25 YYTFRVLFVHTGPCISLVVRNLLFWQ-HKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISS  103 (184)
Q Consensus        25 y~~~~~~~~~~iP~~ii~~~y~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~  103 (184)
                      |.-..-....++-.+.+.++|..+.. ..++.+...+.    +..|.+++......++.+...+.++=|....++     
T Consensus       195 Y~N~~~~~nN~~~~~~t~~lY~~l~~~l~~k~~~~~s~----~~~k~~~qI~iQs~iIC~f~~i~a~iyv~m~f~-----  265 (313)
T PF10321_consen  195 YSNIPHTFNNIIVVICTTFLYIYLCYYLIKKSKYSTSS----QLSKAQRQIFIQSVIICFFHAIAAVIYVYMQFF-----  265 (313)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccch----hhhhhhHHHHHHHHHHHHHHHHHHHHHHeeeee-----
Confidence            44344444445556677788888883 33332222221    223556777777777777777776666555332     


Q ss_pred             cchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHHHhccccc
Q psy2988         104 SVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAV  156 (184)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~  156 (184)
                        .      ....+..+.+..--+++..+|+||..+||..|++++++++.++.
T Consensus       266 --~------~p~~~i~~~~~~Wql~~g~~~iIYl~lNrtIR~~~~k~~~~k~~  310 (313)
T PF10321_consen  266 --P------PPPWLIIIGQISWQLSHGCPPIIYLTLNRTIRNSVLKMLGPKKI  310 (313)
T ss_pred             --c------ccHHHHHHHHHHHhccCCccceEEEEECHHHHHHHHHHHccccc
Confidence              1      13345666677788899999999999999999999999986543

Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].

>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=97.41  E-value=0.0056  Score=47.48  Aligned_cols=80  Identities=14%  Similarity=0.061  Sum_probs=56.1

Q ss_pred             chhhHhhhhhccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhcc
Q psy2988          60 NKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGM  139 (184)
Q Consensus        60 ~~~~~~~~~~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~  139 (184)
                      ..+++++++++|.+..+..+.--..|++.++=|.+..-+   .      . .  .......+.....+..++|++++..+
T Consensus       194 ~~~~s~~r~rke~~f~~Qs~~Q~~~~~i~~~~~~~~~~~---~------~-~--~~~~F~~~t~~w~~~h~~DG~i~l~f  261 (274)
T PF10328_consen  194 SSSESKKRRRKEIRFFIQSFIQDLLYLIDLIFYFFIPPL---S------S-N--RWWQFFCTTFSWVLVHALDGLIMLIF  261 (274)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---c------c-c--cHHHHHHHHHHHHHHHHhcceeEeEE
Confidence            334455567889999999999999999999888887443   1      1 1  11112222233455677899999999


Q ss_pred             CHHHHHHHHHHh
Q psy2988         140 SRQFRETFKELF  151 (184)
Q Consensus       140 ~~~fr~~~~~~~  151 (184)
                      |+++|+..++..
T Consensus       262 N~~~r~~~~~~~  273 (274)
T PF10328_consen  262 NSEIRRKIRKKK  273 (274)
T ss_pred             cHHHHHHHHhcc
Confidence            999999987653

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.

>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor

Probab=97.14  E-value=0.0075  Score=47.63  Aligned_cols=66  Identities=14%  Similarity=0.080  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHHHhc
Q psy2988          78 LIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFI  152 (184)
Q Consensus        78 l~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~  152 (184)
                      +..=.++|++||+|-.|-.+...++.   . +     ..+..+-..++-+-..+|.++|.+.++-.++.+...++
T Consensus       204 L~~Yp~ifiicw~fa~INRI~~~~~~---~-~-----~~l~~Lh~~~s~lqGf~nsivy~~n~~~~~~~~~~~~~  269 (303)
T PF05462_consen  204 LVNYPLIFIICWIFATINRIYNFIGK---N-P-----FWLSVLHVGFSPLQGFFNSIVYGYNNSLMWRYLGSKIL  269 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC---C-c-----hHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            44578889999999999988765431   1 1     12222223445557789999999999998888877664

>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.94  E-value=0.024  Score=44.49  Aligned_cols=73  Identities=14%  Similarity=0.089  Sum_probs=53.2

Q ss_pred             hccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHH
Q psy2988          69 RDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFK  148 (184)
Q Consensus        69 ~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~  148 (184)
                      +..++.++.+..=+..=+++..|-....++......        ......+....++.+-+.+||++...+-+.||++++
T Consensus       220 ~~h~~lv~~Lt~Q~~lP~~~~~p~~~~~~~~~~~~~--------~~~~~e~~~~~~~~~~~~~~P~itl~fv~PYR~~i~  291 (292)
T PF10317_consen  220 SMHRQLVKGLTIQALLPLFFYIPGVIIYFLSQFTGY--------EHPFLEYLIFMLASLPPLIDPLITLYFVRPYRKAIL  291 (292)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc--------ccHHHHHHHHHHHHHHHHhchHhheeeeHhHHHHhc
Confidence            456778888887777778888877777666443321        133445555556777899999999999999999886


Q ss_pred             H
Q psy2988         149 E  149 (184)
Q Consensus       149 ~  149 (184)
                      +
T Consensus       292 r  292 (292)
T PF10317_consen  292 R  292 (292)
T ss_pred             C
Confidence            3

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].

>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.89  E-value=0.025  Score=44.69  Aligned_cols=108  Identities=9%  Similarity=0.082  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhhhhhccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhccch
Q psy2988          27 TFRVLFVHTGPCISLVVRNLLFWQHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVT  106 (184)
Q Consensus        27 ~~~~~~~~~iP~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~~  106 (184)
                      .....+..+.-.++..+++..+.+..++.+.+-++    +.-++.+++.+-+++=.++-.+|-+|-.+..++.....   
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~iS~----~ty~kHk~av~SLi~Q~~~~~i~~~P~~~~~~~~~~~~---  267 (303)
T PF10327_consen  195 FILAFFGGFLCFVIFIFLTIDMFRMLKKLKKKISK----QTYQKHKEAVRSLIAQFATSSICILPPFIFVVVVIFEF---  267 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecC---
Confidence            33333444445666667777777544333222222    23355677777777777777888899998876544321   


Q ss_pred             hhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHH
Q psy2988         107 EILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRET  146 (184)
Q Consensus       107 ~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~  146 (184)
                           .....+.........+.|.+|-++-.++++.||+-
T Consensus       268 -----~~~q~i~~~~~~~f~~HS~~n~ivli~t~ppYR~f  302 (303)
T PF10327_consen  268 -----EDAQVISEICLAIFSSHSSVNMIVLIITTPPYRKF  302 (303)
T ss_pred             -----CCcHHHHHHHHHHHHHhhHhhheeeeEcCcchhhc
Confidence                 11234445556667889999999999999999984

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.

>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor

Probab=96.36  E-value=0.005  Score=38.26  Aligned_cols=68  Identities=9%  Similarity=0.129  Sum_probs=48.9

Q ss_pred             hccccchhhHHHHHHHHHHHhH-HHHHHHHHHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHH
Q psy2988          69 RDSNCTTLMLIVVVTVFLLVEI-PLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQ  142 (184)
Q Consensus        69 ~~~~~~~~~l~~i~~~F~icw~-P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~  142 (184)
                      ++-+|.++.+++=-++|+++|+ |+.+-.+-....      ........+..++..+..+|..+|-++|++.-+.
T Consensus         5 ~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~------~~~~p~~~l~~i~~~~~~~~G~VD~lvf~~~erp   73 (76)
T PF11970_consen    5 KRIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYE------IGHGPSFWLFCIAGFMQPSQGFVDCLVFTLRERP   73 (76)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cCCCCchHHHHHHHHHHHccCHHHhhheeeeccc
Confidence            4456778889999999999999 988765543211      1122244566677778888999999999987654

Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.

>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes

Probab=95.65  E-value=0.055  Score=43.65  Aligned_cols=27  Identities=15%  Similarity=0.265  Sum_probs=20.6

Q ss_pred             chhhHHHHHHHHHHHhHHHHHHHHHHH
Q psy2988          74 TTLMLIVVVTVFLLVEIPLAVVTILHV  100 (184)
Q Consensus        74 ~~~~l~~i~~~F~icw~P~~i~~~~~~  100 (184)
                      .-+-.+.|.++|.+||+|..|--++..
T Consensus       242 IK~kFf~I~lVF~iCWlpNIINg~LL~  268 (405)
T PF02101_consen  242 IKIKFFKIMLVFYICWLPNIINGSLLF  268 (405)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHhHHHHH
Confidence            334467788999999999998776543

A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane

>KOG4193|consensus

Probab=95.41  E-value=0.13  Score=44.46  Aligned_cols=72  Identities=13%  Similarity=0.229  Sum_probs=41.7

Q ss_pred             cchhhHHHHHHHHHHHhHHHHHHHHHHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHHHhc
Q psy2988          73 CTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFI  152 (184)
Q Consensus        73 ~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~  152 (184)
                      +..+..+.++.++=+.|+ +.+..+.       .+     ....+.++..++-.+-..+=.+.|+.++++.|++.++.++
T Consensus       514 ~~~~~~l~L~~lLGlTW~-fgi~s~~-------~~-----~~~v~~YlFti~NalQG~fIFi~~cll~~kvr~~~~k~~~  580 (610)
T KOG4193|consen  514 SLIRSALALLFLLGLTWI-FGIFSWL-------PG-----TSVVFAYLFTIFNALQGVFIFIFHCLLRKKVRKEYRKWLC  580 (610)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHh-------cc-----cchHHHHHHHHHHHhhhhHhhHhhhhhhHHHHHHHHHHhc
Confidence            556666666666666665 2222221       10     1223333333333333455578899999999999999998


Q ss_pred             ccccc
Q psy2988         153 RGAVQ  157 (184)
Q Consensus       153 ~~~~~  157 (184)
                      |.+..
T Consensus       581 ~~~~~  585 (610)
T KOG4193|consen  581 CGRGD  585 (610)
T ss_pred             ccCCC
Confidence            65543

>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=95.22  E-value=0.05  Score=42.14  Aligned_cols=104  Identities=9%  Similarity=-0.007  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHHHH---HHHhhhhhhcchhhHhhhhhccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhccchhhchh
Q psy2988          35 TGPCISLVVRNLLFW---QHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDY  111 (184)
Q Consensus        35 ~iP~~ii~~~y~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~  111 (184)
                      ++.+.+|+...+.|.   ++.+++-..-+......+...|.|+++.+++.+..|+..+..-.+........   .+.   
T Consensus       157 ~~fvgLM~~aSgyMV~~L~RH~q~VqhIhs~~~s~r~SpE~RAtktILlLVs~FV~fY~l~si~~~~~~~~---~~~---  230 (265)
T PF03402_consen  157 VLFVGLMIWASGYMVFLLYRHHQQVQHIHSSSLSPRSSPETRATKTILLLVSTFVSFYGLSSILFIYLTSF---KNS---  230 (265)
T ss_pred             HHHHHHHHhhhhhheeeeeecccccccCcCCCCCCCCChhHHHhCeEeeHHHHHHHHHhHHHHHHHHHHHh---cCC---
Confidence            445667777777776   22222211111111122346789999999999999999999988875543322   111   


Q ss_pred             hHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHH
Q psy2988         112 DAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETF  147 (184)
Q Consensus       112 ~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~  147 (184)
                         .....+...++.+-+++.|++-.-.+++..+-.
T Consensus       231 ---~~~~~~~~~ls~cfptisPfvLI~~d~~i~~~~  263 (265)
T PF03402_consen  231 ---PWLLNISVFLSSCFPTISPFVLISSDKRIIKFL  263 (265)
T ss_pred             ---cceeEHHHHHhHHhHhhChHHhhccCchHHHHh
Confidence               111234456677889999999999988877654

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane

>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=94.94  E-value=0.36  Score=37.89  Aligned_cols=76  Identities=17%  Similarity=0.204  Sum_probs=49.2

Q ss_pred             hccccchhhHHH-HHHHHHHHhHHHHHHHHHHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHH
Q psy2988          69 RDSNCTTLMLIV-VVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETF  147 (184)
Q Consensus        69 ~~~~~~~~~l~~-i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~  147 (184)
                      +..+|..+.+.+ +.+-+++.-.|.....+...... .        ...+..+...+.......+-+...+.++.||+.+
T Consensus       226 k~Qkkfl~~l~iQ~~ip~~~l~~P~~~~~~~~~~~~-~--------~q~~~n~~~~~~~~HG~~sti~mi~~~~pYR~~~  296 (302)
T PF10318_consen  226 KMQKKFLIALIIQVLIPFIFLFIPLIYFIISIIFGY-Y--------NQALNNISFIIISLHGIASTIVMILVHKPYRKFL  296 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-c--------ccccchHHHHHHHhccHHHHHHHhhccHHHHHHH
Confidence            334555554433 34444555668877765433221 1        1223344455667788999999999999999999


Q ss_pred             HHHhcc
Q psy2988         148 KELFIR  153 (184)
Q Consensus       148 ~~~~~~  153 (184)
                      .++++|
T Consensus       297 ~~~~~~  302 (302)
T PF10318_consen  297 LSLFRC  302 (302)
T ss_pred             HHHhcC
Confidence            999976

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].

>KOG4564|consensus

Probab=94.48  E-value=0.11  Score=43.33  Aligned_cols=102  Identities=14%  Similarity=0.112  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhhcchhhHhhhhhccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhccchhhchh-hHHH
Q psy2988          37 PCISLVVRNLLFWQHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDY-DAAN  115 (184)
Q Consensus        37 P~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~-~~~~  115 (184)
                      ++++-.++.+.|+++.-++.+.++...+    ...+|++|-.++.+=+|=|-.+.+..       .      ++. ....
T Consensus       319 ai~vNf~flinIvrILv~KLr~~~~~~~----~~y~K~vKaTLvLIPLfGI~~ilf~~-------~------P~~~~~~~  381 (473)
T KOG4564|consen  319 AILVNFIFLINIVRILVTKLRASNASET----DQYRKLVKATLVLIPLFGIHYILFAF-------R------PDEDTLRE  381 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCccccch----HHHHHHHHHHHHHHHHcCCeeEEEEe-------c------CchHHHHH
Confidence            3444444455555433332222222222    22677888777766555433222111       1      111 1122


Q ss_pred             HHHHHHHHHHHHhcccceeehhccCHHHHHHHHHHhcccc
Q psy2988         116 VLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGA  155 (184)
Q Consensus       116 ~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~  155 (184)
                      ...++...|..+...+=-+||||.|++.|.++++...+.+
T Consensus       382 v~~~~~~~L~SfQGf~VAvlYCFlN~EVq~elrr~W~r~~  421 (473)
T KOG4564|consen  382 VYLYFELFLGSFQGFFVAVLYCFLNGEVQAELRRKWSRWR  421 (473)
T ss_pred             HHHHHHHHHHhccchheehheeecCHHHHHHHHHHHHhcC
Confidence            3333444455555567778999999999999999887655

>PF03125 Sre: C

Probab=94.18  E-value=2.2  Score=34.60  Aligned_cols=42  Identities=14%  Similarity=0.092  Sum_probs=33.0

Q ss_pred             HHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHHHhcccc
Q psy2988         114 ANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGA  155 (184)
Q Consensus       114 ~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~  155 (184)
                      ...+..+.+....+++.+=|.+-....++.|+++++.+...+
T Consensus       282 ~~~~~~~~e~~i~l~~~~i~~~~i~s~~~wrk~f~~~~~~~~  323 (365)
T PF03125_consen  282 RTILNHIFENCIFLNPIFICPVIIFSVPSWRKEFKRSFPKIR  323 (365)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHcCHHHHHHHHHhhhhhh
Confidence            345556667778888888888888999999999998886533

elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane

>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=94.03  E-value=0.0091  Score=47.03  Aligned_cols=110  Identities=12%  Similarity=0.148  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhhhhhccccchhhHHH-HHHHHHHHhHHHHHHHHHHHhhcc
Q psy2988          26 YTFRVLFVHTGPCISLVVRNLLFWQHKRDKLFKENKKSECKRLRDSNCTTLMLIV-VVTVFLLVEIPLAVVTILHVISSS  104 (184)
Q Consensus        26 ~~~~~~~~~~iP~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-i~~~F~icw~P~~i~~~~~~~~~~  104 (184)
                      ..........+.+.++++|-.++.+..++.....    +.+.++-.+++.+.+++ .++-.+...+|..+..+.-.++-+
T Consensus       197 ~~~~~~~im~~s~~iii~cg~~~~~~i~~~~~~~----S~~~~~lq~QLf~aLv~Qt~iP~i~~~~P~~~~~~~p~~~i~  272 (307)
T PF10326_consen  197 GMLIMCIIMSISFFIIIYCGIKIYKKIKKLSSIM----SSKTRKLQKQLFKALVIQTIIPFIFMYIPVFIVFILPFFGID  272 (307)
T ss_pred             eeeecchhHHhHHHHHHHHHhhhHHHHhcccccc----ChhhHHHHHHHHHHHHHHhhhhheeeecchhheeeeeccCCC
Confidence            3444445566778888888888884443322221    11122334555555543 345567888999988655332211


Q ss_pred             chhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHH
Q psy2988         105 VTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFK  148 (184)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~  148 (184)
                          .     .....+...+..+-|++||++-.+.-|+||++++
T Consensus       273 ----~-----~~~~~~~~~~~~~yP~iDpl~~i~~ik~yR~~i~  307 (307)
T PF10326_consen  273 ----L-----GFFSNIISILISLYPAIDPLPVIFIIKDYRKAIK  307 (307)
T ss_pred             ----C-----CccccHhhhhEEEEeehhhheeeEeeHHHHHhhC
Confidence                1     1112233344666899999999999999999874

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].

>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity

Probab=93.57  E-value=1.9  Score=33.59  Aligned_cols=107  Identities=11%  Similarity=0.119  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhcchhhHhhhhhccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhccc
Q psy2988          27 TFRVLFVHTGPCISLVVRNLLFW-QHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSV  105 (184)
Q Consensus        27 ~~~~~~~~~iP~~ii~~~y~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~  105 (184)
                      ++-.++.+.+|+.+.++ |+.++ ++...++...        .|.|.+..|.-+.+.++|-+.-   .+.    .+++..
T Consensus       189 iiE~ilQ~~IPi~Il~i-YiAIIiKI~~MKkssL--------nK~Ei~ILKQAifIFvlFQ~ss---~VF----l~~qt~  252 (305)
T PF04789_consen  189 IIEIILQFGIPIFILVI-YIAIIIKIIKMKKSSL--------NKNEITILKQAIFIFVLFQASS---CVF----LLCQTF  252 (305)
T ss_pred             HHHHHHHHhHHHHHHHH-HHHHHHHHHHHhhccC--------CchhHHHHHHHHHHHHHHHHHH---HHH----Hhheee
Confidence            36777788999977766 66665 4442221111        1336667777666655554443   222    222211


Q ss_pred             hhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHHHh
Q psy2988         106 TEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELF  151 (184)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~  151 (184)
                      .  ......-.+..+.+.+-....+.-|-...++|++.|+-+..-.
T Consensus       253 ~--~~~~tAFlIKR~iNT~ei~agaatP~ffffTs~eirk~~s~kv  296 (305)
T PF04789_consen  253 K--FNVATAFLIKRIINTMEIFAGAATPCFFFFTSKEIRKLVSSKV  296 (305)
T ss_pred             e--ecchHHHHHHHHHHHHHHHhhccCCeEEEEehHHHHHHHHhhc
Confidence            1  2222234455566777777889999999999999998775433

>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=93.48  E-value=0.79  Score=36.37  Aligned_cols=131  Identities=12%  Similarity=0.111  Sum_probs=62.3

Q ss_pred             cccccCCCceee-----eeccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hhcchhhHhhhhhccccchh
Q psy2988           3 QLQRPEHAAWVT-----WLSVDFYFTAYYTFRVLFVHTGPCISLVVRNLLFWQHKRDKL-FKENKKSECKRLRDSNCTTL   76 (184)
Q Consensus         3 ~~c~~~~~~~~~-----~~~~~~~~~~y~~~~~~~~~~iP~~ii~~~y~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~   76 (184)
                      .+|.+-+.++..     ...++............... .-++.++++++.+..+.|+.+ ...+.+++.+++|.|+-++.
T Consensus       169 G~C~Ql~~Pf~fGAI~I~~~~~~~~~~~~~~~l~~s~-~~~~~iii~N~lm~~Klr~~k~~l~~~~~s~~~~KAE~SLT~  247 (307)
T PF10322_consen  169 GYCRQLDPPFPFGAIIITSTGSWFNIRNSIFHLFFSI-FWMISIIILNILMFFKLRKLKSSLSSQRRSKQSRKAERSLTL  247 (307)
T ss_pred             EEEEeCCCCCCCCEEEEEEEcccccchhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcccchhhcccchhhheeHHH
Confidence            467776666622     22222222223333333323 334455566777774444333 23333444445677877777


Q ss_pred             hHHHHHHHHHHHhHHHHHHHHHHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHH
Q psy2988          77 MLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRET  146 (184)
Q Consensus        77 ~l~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~  146 (184)
                      +.++|++-++.    ..++.+.....        .....++..+-....=+-.++=|+++.++++-||++
T Consensus       248 Tmi~mliP~i~----n~i~~i~~~~~--------~~~~~y~~~iRp~~~D~~~~iv~w~FY~THP~Fkkk  305 (307)
T PF10322_consen  248 TMISMLIPYIT----NGIISISFLFF--------PSYSSYILLIRPFGNDCRTCIVPWYFYLTHPIFKKK  305 (307)
T ss_pred             HHHHHHHHHHH----HHHHHHHHhcC--------chHHHHHHHHhhhhhccceeEEEEEeeecChhhcCC
Confidence            77777664432    11222211111        111222222222222334577788888888888763

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].

>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=91.79  E-value=3.8  Score=32.52  Aligned_cols=72  Identities=13%  Similarity=-0.052  Sum_probs=43.2

Q ss_pred             hhhccccchhhHHHHHH-HHHHHhHHHHHHHHHHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHH
Q psy2988          67 RLRDSNCTTLMLIVVVT-VFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRE  145 (184)
Q Consensus        67 ~~~~~~~~~~~l~~i~~-~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~  145 (184)
                      ..+-.+++.|.+++=++ --++|+.|-.+....-.++        .+.............-+=|.+||+.-.+.-+.||+
T Consensus       237 T~~lq~qL~~AL~vQT~IPi~vsf~Pc~~~wy~pif~--------i~~~~~~n~~~~iAls~FPf~DPlAii~~lP~~R~  308 (310)
T PF10319_consen  237 TKRLQRQLFKALIVQTVIPICVSFSPCVLSWYGPIFG--------IDLGRWNNYFSVIALSAFPFLDPLAIILCLPAFRN  308 (310)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhccHHHHHhHHHHc--------CChhHHHHHHHHHHHHHccccCchHhheecHHhhc
Confidence            33445666666655433 3567888887774332222        11123333333333445689999999999999997


Q ss_pred             H
Q psy2988         146 T  146 (184)
Q Consensus       146 ~  146 (184)
                      .
T Consensus       309 r  309 (310)
T PF10319_consen  309 R  309 (310)
T ss_pred             c
Confidence            5

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].

>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=85.37  E-value=9.6  Score=29.21  Aligned_cols=18  Identities=17%  Similarity=-0.014  Sum_probs=15.5

Q ss_pred             cccceeehhccCHHHHHH
Q psy2988         129 YPINFAIYCGMSRQFRET  146 (184)
Q Consensus       129 s~~NPiiY~~~~~~fr~~  146 (184)
                      +...|++-..+|++.|++
T Consensus       257 tl~~P~iLl~fs~~vR~~  274 (275)
T PF02118_consen  257 TLSQPYILLIFSKNVRRQ  274 (275)
T ss_pred             HHHHHHHHheECHhhhcc
Confidence            566699999999999986

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane

>KOG4220|consensus

Probab=83.93  E-value=2.3  Score=35.21  Aligned_cols=25  Identities=4%  Similarity=-0.080  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2988          25 YYTFRVLFVHTGPCISLVVRNLLFW   49 (184)
Q Consensus        25 y~~~~~~~~~~iP~~ii~~~y~~i~   49 (184)
                      .+.-..+..|.+|..||.++|.+|.
T Consensus       193 iTfGTAiAAFYlPVtiM~~LY~rIy  217 (503)
T KOG4220|consen  193 ITFGTAIAAFYLPVTIMTILYWRIY  217 (503)
T ss_pred             eehhHHHHHHHhhHHHHHHHHHHHH
Confidence            3445556679999999999999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	184
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	2e-06
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	3e-04

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 35/166 (21%), Positives = 58/166 (34%), Gaps = 22/166 (13%)

Query: 15  WLSVDFYFTAYYTFRVLFVHTGP------CISLVVRNLLFWQHKRDKLFKENKKSECKRL 68
           ++S D    +      +    GP      C   +V ++    H++ ++    K+   K L
Sbjct: 190 YISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSV--SNHEK-EMAAMAKRLNAKEL 246

Query: 69  RDSNCT-------TLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFT 121
           R +            + IV+V+ FLL   P AVV +L        E +   AA + V+F 
Sbjct: 247 RKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPL--EWVTPYAAQLPVMFA 304

Query: 122 NFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAVQVGRRNGGGSS 167
                 S   N  IY     +FRE   + F          +     
Sbjct: 305 ----KASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKETED 346

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488

 Score = 39.3 bits (91), Expect = 3e-04
 Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 14/124 (11%)

Query: 50  QHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEIL 109
           +            +    L+        L ++V +F L  +PL ++          +   
Sbjct: 369 KRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAP 428

Query: 110 DYDAANVLVLFTNFFIIVSY---PINFAIYCGMSRQFRETFKELFIRGAVQVGRRNGGGS 166
            +             I++S+    +N  IY    R+FR+TF+++       V R+     
Sbjct: 429 LW--------LMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRS---HVLRQQEPFK 477

Query: 167 SRYS 170
           + + 
Sbjct: 478 AHHH 481

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	184
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	99.92
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	99.88
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	99.87
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	99.87
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	99.87
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	99.86
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	99.85
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	99.85
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	99.84
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	99.84
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	99.83
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	99.83
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	99.82
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	99.82
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	99.82
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	99.82
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	99.81
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	99.8
2koe_A	40	Human cannabinoid receptor 1 - helix 7/8 peptide;	99.03
2ki9_A	33	Cannabinoid receptor 2; GPCR, G-protein coupled re	98.62

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=99.92  E-value=6.6e-26  Score=188.13  Aligned_cols=93  Identities=20%  Similarity=0.211  Sum_probs=63.7

Q ss_pred             hccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhccchhh-chhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHH
Q psy2988          69 RDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEI-LDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETF  147 (184)
Q Consensus        69 ~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~  147 (184)
                      ++++|++||+++|+++|++||+||+++.++..+....... ........+..++.+|+|+|||+||+||+++|++||++|
T Consensus       402 ~~erk~~k~L~iVv~~F~iCWlPf~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Y~NS~iNPiIY~~~n~~FR~aF  481 (510)
T 4grv_A          402 QALRHGVLVARAVVIAFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLVSANFRQVF  481 (510)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            4578999999999999999999999999987765332111 112334566778899999999999999999999999999


Q ss_pred             HHHhcccccccCCc
Q psy2988         148 KELFIRGAVQVGRR  161 (184)
Q Consensus       148 ~~~~~~~~~~~~~~  161 (184)
                      +++|+|.+++.+++
T Consensus       482 k~iL~C~C~~~r~R  495 (510)
T 4grv_A          482 LSTLACLCPGWRHR  495 (510)
T ss_dssp             --------------
T ss_pred             HHHHhhcCCCCCCC
Confidence            99998755443333

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=99.88  E-value=2.2e-22  Score=166.32  Aligned_cols=79  Identities=27%  Similarity=0.394  Sum_probs=65.4

Q ss_pred             ccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHH
Q psy2988          70 DSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKE  149 (184)
Q Consensus        70 ~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~  149 (184)
                      +++|+++++++++++|++||+||+++.++..+...       .....+..+..+|+++||++||+||++ +++||+++++
T Consensus       402 ~e~ka~ktl~ivv~~F~icWlP~~i~~l~~~~~~~-------~~~~~~~~~~~~L~y~NS~iNPiIY~~-n~~FR~af~~  473 (500)
T 2rh1_A          402 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN-------LIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQE  473 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-------SSCHHHHHHHHHHHHHGGGTHHHHGGG-SHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------cccHHHHHHHHHHHHHHHhhcchhhhc-cHHHHHHHHH
Confidence            67899999999999999999999999988766521       123456677889999999999999996 9999999999


Q ss_pred             Hhccccc
Q psy2988         150 LFIRGAV  156 (184)
Q Consensus       150 ~~~~~~~  156 (184)
                      +++|.++
T Consensus       474 il~~~~~  480 (500)
T 2rh1_A          474 LLCLRRS  480 (500)
T ss_dssp             HTTC---
T ss_pred             HHhhhcc
Confidence            9977554

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=99.87  E-value=5.8e-23  Score=168.18  Aligned_cols=88  Identities=18%  Similarity=0.120  Sum_probs=60.5

Q ss_pred             hhccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHH
Q psy2988          68 LRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETF  147 (184)
Q Consensus        68 ~~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~  147 (184)
                      .++++|+++|+++++++|++||+||+++.++..+.....  ........+..++.+|+++||++||+||++++++||+++
T Consensus       382 ~~~~~r~~k~l~~v~~~F~icwlP~~i~~l~~~~~~~~~--~~~~~~~~~~~~~~~L~~~ns~iNPiIY~~~~~~fR~~~  459 (484)
T 3vw7_A          382 RSKKSRALFLSAAVFCIFIICFGPTNVLLIAHYSFLSHT--STTEAAYFAYLLCVCVSSISCCIDPLIYYYASSECQRYV  459 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTCTTC--TTSHHHHHHHHHHHHHHTTHHHHHHHHHHHTSSCC----
T ss_pred             hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccc--cchhHHHHHHHHHHHHHHhccccchHHHHHhhHHHHHHH
Confidence            355689999999999999999999999998876542211  223344566778899999999999999999999999999


Q ss_pred             HHHhcccccc
Q psy2988         148 KELFIRGAVQ  157 (184)
Q Consensus       148 ~~~~~~~~~~  157 (184)
                      +++++|.+..
T Consensus       460 ~~ll~~~~~~  469 (484)
T 3vw7_A          460 YSILCCKESS  469 (484)
T ss_dssp             ----------
T ss_pred             HHHHhhccCC
Confidence            9999876543

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=99.87  E-value=3.5e-22  Score=158.18  Aligned_cols=134  Identities=17%  Similarity=0.210  Sum_probs=100.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhcchhhHhhhhhccccchhhHHHHHHHHHHHhHHHHHHHHH
Q psy2988          20 FYFTAYYTFRVLFVHTGPCISLVVRNLLFWQHKRD-KLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTIL   98 (184)
Q Consensus        20 ~~~~~y~~~~~~~~~~iP~~ii~~~y~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~F~icw~P~~i~~~~   98 (184)
                      .....|.+...++.+++|++++.++|..|.+..++ +......++..++.++++|+++++++++++|++||+|+++..++
T Consensus       191 ~~~~~~~~~~~~~~~~lp~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~v~~~f~~~~~P~~i~~~~  270 (364)
T 2ks9_A          191 IYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGDSSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLL  270 (364)
T ss_dssp             TTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSCSCCCSSSSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567888888899999999999999999943332 22222222222334667899999999999999999999999888


Q ss_pred             HHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHHHhccccc
Q psy2988          99 HVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAV  156 (184)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~  156 (184)
                      ..+.....   .......+..+..+++++||++||+||++++++||++++++++|+++
T Consensus       271 ~~~~~~~~---~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~~~  325 (364)
T 2ks9_A          271 PYINPDLY---LKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRCCPF  325 (364)
T ss_dssp             HHHSTTSC---SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHSSSCC
T ss_pred             HHhCcccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCC
Confidence            66543211   11223345566778999999999999999999999999999977553

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=99.87  E-value=2.6e-22  Score=164.16  Aligned_cols=87  Identities=20%  Similarity=0.301  Sum_probs=71.8

Q ss_pred             hhccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHH
Q psy2988          68 LRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETF  147 (184)
Q Consensus        68 ~~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~  147 (184)
                      .++++|+++|+++++++|++||+|++++.++..+....     ......+..++.+|+++|+++||+||++++++||+++
T Consensus       387 ~~~~~r~~~~l~~iv~~F~icw~P~~i~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~  461 (488)
T 3eml_A          387 LQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC-----SHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTF  461 (488)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTS-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcc-----ccccHHHHHHHHHHHHHHhhhchhhhhhcCHHHHHHH
Confidence            36788999999999999999999999999887765321     1223455667888999999999999999999999999


Q ss_pred             HHHhcccccccC
Q psy2988         148 KELFIRGAVQVG  159 (184)
Q Consensus       148 ~~~~~~~~~~~~  159 (184)
                      ++++++..++..
T Consensus       462 ~~l~~~~~~~~~  473 (488)
T 3eml_A          462 RKIIRSHVLRQQ  473 (488)
T ss_dssp             HHHHHHTTSCC-
T ss_pred             HHHHhhcccccC
Confidence            999988664443

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=99.86  E-value=1.6e-22  Score=163.83  Aligned_cols=87  Identities=20%  Similarity=0.301  Sum_probs=70.2

Q ss_pred             hhccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHH
Q psy2988          68 LRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETF  147 (184)
Q Consensus        68 ~~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~  147 (184)
                      .++++|+++++++++++|++||+|++++.++..+....     ......+..++.+++++||++||+||++++++||+++
T Consensus       346 ~~~~~r~~k~l~~vv~~F~icw~P~~i~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~  420 (447)
T 4eiy_A          346 LQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC-----SHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTF  420 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTS-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhheeccHHHHHHHHHHhcCcc-----cccchHHHHHHHHHHHHHhccchhhhHhccHHHHHHH
Confidence            46788999999999999999999999998887665321     1223456678889999999999999999999999999


Q ss_pred             HHHhcccccccC
Q psy2988         148 KELFIRGAVQVG  159 (184)
Q Consensus       148 ~~~~~~~~~~~~  159 (184)
                      ++++++..++..
T Consensus       421 ~~~~~~~~~r~~  432 (447)
T 4eiy_A          421 RKIIRSHVLRQQ  432 (447)
T ss_dssp             HHHHHHTC----
T ss_pred             HHHHHHHHhccC
Confidence            999987664433

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=99.85  E-value=1.9e-21  Score=158.32  Aligned_cols=81  Identities=17%  Similarity=0.298  Sum_probs=66.7

Q ss_pred             hccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHH
Q psy2988          69 RDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFK  148 (184)
Q Consensus        69 ~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~  148 (184)
                      ++++|+++++++++++|++||+|+.++.++..+...       .....+..+..+|+++|+++||+||++++++||++++
T Consensus       381 ~~~~k~~k~l~~iv~~F~icw~P~~i~~~~~~~~~~-------~~~~~~~~i~~~L~~~ns~~NPiIY~~~~~~fR~~~~  453 (467)
T 3uon_A          381 SREKKVTRTILAILLAFIITWAPYNVMVLINTFCAP-------CIPNTVWTIGYWLCYINSTINPACYALCNATFKKTFK  453 (467)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCST-------TSCHHHHHHHHHHHHHTTTHHHHHHHHHCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc-------ccchHHHHHHHHHHHHhhhhhhHHHHHcCHHHHHHHH
Confidence            467899999999999999999999999988765521       1234566778889999999999999999999999999


Q ss_pred             HHhccccc
Q psy2988         149 ELFIRGAV  156 (184)
Q Consensus       149 ~~~~~~~~  156 (184)
                      ++++|.++
T Consensus       454 ~ll~c~~~  461 (467)
T 3uon_A          454 HLLMCHYK  461 (467)
T ss_dssp             HHCC----
T ss_pred             HHHhhhcc
Confidence            99977654

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=99.85  E-value=1.4e-21  Score=160.56  Aligned_cols=88  Identities=8%  Similarity=0.091  Sum_probs=70.8

Q ss_pred             hccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhccchhh---chhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHH
Q psy2988          69 RDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEI---LDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRE  145 (184)
Q Consensus        69 ~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~  145 (184)
                      ++++|+++++++++++|++||+||+++.++..+.......   ........+..++.+|+++||++||+||++++++||+
T Consensus       406 ~~~~k~~k~l~~vv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~  485 (502)
T 3odu_A          406 HQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKT  485 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTTTCCCCC
T ss_pred             HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHhcccchhhhhhcCHHHHH
Confidence            4578999999999999999999999998887654221111   1133345556688899999999999999999999999


Q ss_pred             HHHHHhccccc
Q psy2988         146 TFKELFIRGAV  156 (184)
Q Consensus       146 ~~~~~~~~~~~  156 (184)
                      +++++++++++
T Consensus       486 ~~~~ll~~~~~  496 (502)
T 3odu_A          486 SAQHALTSGRP  496 (502)
T ss_dssp             CHHHHHSSCSS
T ss_pred             HHHHHhccCCc
Confidence            99999987653

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=99.84  E-value=2.9e-21  Score=157.00  Aligned_cols=81  Identities=22%  Similarity=0.331  Sum_probs=67.0

Q ss_pred             hccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHH
Q psy2988          69 RDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFK  148 (184)
Q Consensus        69 ~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~  148 (184)
                      ++++|+++++++++++|++||+|++++.++..+...    ........+..++.+|+++||++||+||++++++||++++
T Consensus       376 ~~~~r~~k~l~~v~~~F~icw~P~~i~~l~~~~~~~----~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~  451 (464)
T 4dkl_A          376 RNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITI----PETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFR  451 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcC----CccccchhHHHHHHHHHHhhhchhHHHHHHhhHHHHHHHH
Confidence            556799999999999999999999999888765532    2233345566778889999999999999999999999999


Q ss_pred             HHhcc
Q psy2988         149 ELFIR  153 (184)
Q Consensus       149 ~~~~~  153 (184)
                      +++++
T Consensus       452 ~lc~~  456 (464)
T 4dkl_A          452 EFCIP  456 (464)
T ss_dssp             HHHC-
T ss_pred             HHhcc
Confidence            98654

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=99.84  E-value=4.7e-21  Score=156.72  Aligned_cols=81  Identities=20%  Similarity=0.335  Sum_probs=66.9

Q ss_pred             ccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHH
Q psy2988          70 DSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKE  149 (184)
Q Consensus        70 ~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~  149 (184)
                      +++|+++|+++++++|++||+|++++.++..+...      ......+..++.+|+++|+++||+||++++++||+++++
T Consensus       395 ~~~k~~k~l~~iv~~F~icw~P~~i~~~~~~~~~~------~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~  468 (481)
T 3pbl_A          395 REKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQT------CHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLK  468 (481)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSS------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhcccc------ccCcHHHHHHHHHHHHHhhccchHHHHHcCHHHHHHHHH
Confidence            57899999999999999999999999888665421      122345666788899999999999999999999999999


Q ss_pred             Hhccccc
Q psy2988         150 LFIRGAV  156 (184)
Q Consensus       150 ~~~~~~~  156 (184)
                      +++|+++
T Consensus       469 ll~c~~~  475 (481)
T 3pbl_A          469 ILSCGRP  475 (481)
T ss_dssp             HHCC---
T ss_pred             HHhccCc
Confidence            9987653

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=99.83  E-value=3.4e-21  Score=151.27  Aligned_cols=128  Identities=18%  Similarity=0.229  Sum_probs=96.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhhhhhccccchhhHHHHHHHHHHHhHHHHHHHHHHH
Q psy2988          21 YFTAYYTFRVLFVHTGPCISLVVRNLLFWQHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHV  100 (184)
Q Consensus        21 ~~~~y~~~~~~~~~~iP~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~  100 (184)
                      ....|.+...++.+++|+++++++|.+|.+..+++.....  ++.++.++++|+++++++++++|++||+|+++..++..
T Consensus       200 ~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~  277 (349)
T 1u19_A          200 NNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQ--ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIF  277 (349)
T ss_dssp             THHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCSSC--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhe
Confidence            4567888888888999999999999999943322221111  11223356778999999999999999999999987765


Q ss_pred             hhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHHHhccccc
Q psy2988         101 ISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAV  156 (184)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~  156 (184)
                      .....      .....+..+..+++++||++||+||++++++||++++++++|.+.
T Consensus       278 ~~~~~------~~~~~~~~~~~~l~~~ns~~nPiiY~~~~~~fR~~~~~~~~c~~~  327 (349)
T 1u19_A          278 THQGS------DFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN  327 (349)
T ss_dssp             HTTTS------CCCHHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHHHHHHHTSSCC
T ss_pred             ecCCc------ccchHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHhcccCC
Confidence            44221      112334567778899999999999999999999999999977543

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=99.82  E-value=1.1e-20  Score=157.09  Aligned_cols=83  Identities=18%  Similarity=0.192  Sum_probs=65.6

Q ss_pred             ccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHH
Q psy2988          70 DSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKE  149 (184)
Q Consensus        70 ~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~  149 (184)
                      +++|+++|+++++++|++||+||+++.++..+.......     ......++.+++++||++||+||++++++||+++++
T Consensus       415 ~~~k~~~~~~~vv~~F~vcw~P~~i~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~  489 (520)
T 3v2y_A          415 ENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKTCD-----ILFRAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIR  489 (520)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTTCS-----TTTSCHHHHHHHHHGGGTHHHHHHHHCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc-----HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence            578899999999999999999999999887655321111     112233556789999999999999999999999999


Q ss_pred             Hhcccccc
Q psy2988         150 LFIRGAVQ  157 (184)
Q Consensus       150 ~~~~~~~~  157 (184)
                      ++++....
T Consensus       490 ~~~~~~~~  497 (520)
T 3v2y_A          490 IMGRPLEV  497 (520)
T ss_dssp             TCCSCC--
T ss_pred             HHHHhccc
Confidence            99876543

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=99.82  E-value=8.8e-21  Score=146.67  Aligned_cols=127  Identities=21%  Similarity=0.329  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-cc---hhhHhhhhhccccchhhHHHHHHHHHHHhHHHHHHHH
Q psy2988          22 FTAYYTFRVLFVHTGPCISLVVRNLLFWQHKRDKLFK-EN---KKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTI   97 (184)
Q Consensus        22 ~~~y~~~~~~~~~~iP~~ii~~~y~~i~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~l~~i~~~F~icw~P~~i~~~   97 (184)
                      ...|.....++.+++|+++++++|.+|.+..+++..+ ..   ++.++...++++|+++++++++++|++||+|+++..+
T Consensus       174 ~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~i~~~P~~i~~~  253 (315)
T 4amj_A          174 NRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNI  253 (315)
T ss_dssp             CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHTC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4568888888889999999999999999433332211 11   1112223356789999999999999999999999988


Q ss_pred             HHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHHHhccccc
Q psy2988          98 LHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAV  156 (184)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~  156 (184)
                      +..+....       ....+..+..+++++||++||+||+ ++++||++++++++|.+.
T Consensus       254 ~~~~~~~~-------~~~~~~~~~~~l~~~ns~~nPiiY~-~~~~fR~~~~~~l~~~~~  304 (315)
T 4amj_A          254 VNVFNRDL-------VPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAFPRK  304 (315)
T ss_dssp             HHHHCTTS-------SCHHHHHHHHHHHHHGGGTHHHHGG-GSHHHHHHHHHHHC----
T ss_pred             HHHhcCcc-------chHHHHHHHHHHHHHhccccHHHHc-CcHHHHHHHHHHhCCCCc
Confidence            86654211       1233455677889999999999999 999999999999987553

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=99.82  E-value=7.9e-21  Score=146.74  Aligned_cols=124  Identities=13%  Similarity=0.137  Sum_probs=96.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhhhhhccccchhhHHHHHHHHHHHhHHHHHHHHH
Q psy2988          19 DFYFTAYYTFRVLFVHTGPCISLVVRNLLFWQHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTIL   98 (184)
Q Consensus        19 ~~~~~~y~~~~~~~~~~iP~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~F~icw~P~~i~~~~   98 (184)
                      ......|.+....+.+++|+.++.++|.++.+..+++           +.++++|+++++..++++|++||+|+++..++
T Consensus       168 ~~~~~~~~~~~~~~~~~~p~~i~~~~y~~i~~~~~~~-----------~~~~~~k~~~~~~~v~~~f~icw~P~~i~~~~  236 (296)
T 2lnl_A          168 AKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFKA-----------HMGQKHRAMRVIFAVVLIFLLCWLPYNLVLLA  236 (296)
T ss_dssp             TTTTTHHHHTTTHHHHHHHHHHHHHHHHHHTTTSSSC-----------CCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhhhhhhHHHHHHHhhhheeeeehHHHHHHHH
Confidence            3445578888888899999999999999887433221           11336789999999999999999999999988


Q ss_pred             HHhhccchhhch---hhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHHHhcc
Q psy2988          99 HVISSSVTEILD---YDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIR  153 (184)
Q Consensus        99 ~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~  153 (184)
                      ..+.........   .........++.+++++||++||+||++++++||++++++++|
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~ll~c  294 (296)
T 2lnl_A          237 DTLMRTQVIQESCERRNNIGRALDATEILGFLHSCLNPIIYAFIGQNFRHGFLKILAM  294 (296)
T ss_dssp             HHHTCSSSCSCHHHHHHHTTHHHHHHHHHGGGGGTHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred             HHHhccccCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcC
Confidence            776543222221   2223355667888999999999999999999999999999976

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=99.82  E-value=2e-20  Score=151.73  Aligned_cols=81  Identities=19%  Similarity=0.269  Sum_probs=65.8

Q ss_pred             hccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHH
Q psy2988          69 RDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFK  148 (184)
Q Consensus        69 ~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~  148 (184)
                      ++++|+++++++++++|++||+|++++.++..+.....       ...+..++.+|+++|+++||+||++++++||++++
T Consensus       366 ~~~~k~~k~l~~vv~~f~icwlP~~i~~l~~~~~~~~~-------~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~  438 (452)
T 3rze_A          366 NRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNCC-------NEHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFK  438 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS-------CTTTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccc-------cHHHHHHHHHHHHHHhcccchhhhhccHHHHHHHH
Confidence            36789999999999999999999999988876653211       12234477889999999999999999999999999


Q ss_pred             HHhccccc
Q psy2988         149 ELFIRGAV  156 (184)
Q Consensus       149 ~~~~~~~~  156 (184)
                      ++++|.+.
T Consensus       439 ~ll~~~~~  446 (452)
T 3rze_A          439 RILHIRSG  446 (452)
T ss_dssp             HHHTC---
T ss_pred             HHHHhccc
Confidence            99987653

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=99.81  E-value=1.3e-19  Score=147.45  Aligned_cols=128  Identities=18%  Similarity=0.132  Sum_probs=94.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhh--h-------cchhhHhhhhhccccchhhHHHHHHHHHHH
Q psy2988          19 DFYFTAYYTFRVLFVHTGPCISLVVRNLLFW-QHKRDKLF--K-------ENKKSECKRLRDSNCTTLMLIVVVTVFLLV   88 (184)
Q Consensus        19 ~~~~~~y~~~~~~~~~~iP~~ii~~~y~~i~-~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~l~~i~~~F~ic   88 (184)
                      +.....|.++..++.+++|+++++++|..|+ ..+++++.  .       ...++..++.++++|+++++++++++|++|
T Consensus       194 ~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~iv~~F~i~  273 (448)
T 2z73_A          194 DSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLS  273 (448)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhccccHHHHHHHHHHHHHHHHHHH
Confidence            4455678888888889999999999999999 22222111  0       011111223356789999999999999999


Q ss_pred             hHHHHHHHHHHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHHHhc
Q psy2988          89 EIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFI  152 (184)
Q Consensus        89 w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~  152 (184)
                      |+|++++.++..+....      .....+..+..+++++|+++||+||++++++||++++++++
T Consensus       274 ~~P~~i~~~~~~~~~~~------~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~~  331 (448)
T 2z73_A          274 WSPYAVVALLAQFGPLE------WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFP  331 (448)
T ss_dssp             HHHHHHHHHHHHHSCGG------GCCHHHHHHHHHHHHHGGGSHHHHHHHHCHHHHHHHHHHCG
T ss_pred             hHHHHHHHHHHHhCCcc------cCChHHHHHHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHH
Confidence            99999998886654211      11234455677889999999999999999999999999985

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=99.80  E-value=6.9e-20  Score=151.80  Aligned_cols=127  Identities=24%  Similarity=0.276  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhh--hcc--------------------hhhHhhhhhccccchhhH
Q psy2988          22 FTAYYTFRVLFVHTGPCISLVVRNLLFWQ-HKRDKLF--KEN--------------------KKSECKRLRDSNCTTLML   78 (184)
Q Consensus        22 ~~~y~~~~~~~~~~iP~~ii~~~y~~i~~-~~~~~~~--~~~--------------------~~~~~~~~~~~~~~~~~l   78 (184)
                      ...|.+...++.+++|+++++++|.+|++ .++..+.  ...                    .+++.+..++++|+++++
T Consensus       345 ~~~y~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l  424 (514)
T 3sn6_R          345 NQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTL  424 (514)
T ss_dssp             CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------------------CHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccchhhhhHHHHHHHHHH
Confidence            34688888889999999999999999993 2222111  000                    001111224678999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHHHhccccc
Q psy2988          79 IVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAV  156 (184)
Q Consensus        79 ~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~  156 (184)
                      ++++++|++||+|++++.++..+...       .....+..+..+++++||++||+||+ ++++||+++++++++.+.
T Consensus       425 ~~iv~~F~lcwlP~~i~~~~~~~~~~-------~~~~~~~~~~~~l~~~ns~~NPiIY~-~~~~fR~~~~~~l~~~~~  494 (514)
T 3sn6_R          425 GIIMGTFTLCWLPFFIVNIVHVIQDN-------LIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCLRRS  494 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTT-------SSCHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHTTCC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccc-------ccchHHHHHHHHHHHHHHhhhHHhhc-CCHHHHHHHHHHhCcCcc
Confidence            99999999999999999888665321       11234556778899999999999999 999999999999976553

>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}

Probab=99.03  E-value=6.2e-11  Score=64.15  Aligned_cols=37  Identities=22%  Similarity=0.478  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHhcccceeehhccCHHHHHHHHHHhccc
Q psy2988         118 VLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRG  154 (184)
Q Consensus       118 ~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~  154 (184)
                      ..++.+++++||++||+||++.+++||++++++++++
T Consensus         3 ~~~~~~l~~~ns~lNPiIY~~~~~~fr~~~~~~~~~~   39 (40)
T 2koe_A            3 FAFASMLCLLNSTVNPIIYALRSKDLRHAFRSMFPSA   39 (40)
T ss_dssp             HHHHHHHHHHHHHSSTTTTBTTBHHHHHHHTTTCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhhhc
Confidence            3466778999999999999999999999999988653

>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}

Probab=98.62  E-value=5e-09  Score=54.02  Aligned_cols=28  Identities=18%  Similarity=0.186  Sum_probs=25.2

Q ss_pred             cccchhhHHHHHHHHHHHhHHHHHHHHH
Q psy2988          71 SNCTTLMLIVVVTVFLLVEIPLAVVTIL   98 (184)
Q Consensus        71 ~~~~~~~l~~i~~~F~icw~P~~i~~~~   98 (184)
                      |+|+++++.+++++|++||+||++..++
T Consensus         1 e~k~~k~l~~vv~~F~icW~P~~i~~~~   28 (33)
T 2ki9_A            1 DVRLAKTLGLVLAVLLICWFPVLALMAH   28 (33)
T ss_dssp             CCSSSSHHHHHHHHHTTTSSHHHHHHTT
T ss_pred             CchhhhhHHHHHHHHHHHHhHHHHHHHH
Confidence            4689999999999999999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	184
d1u19a_	348	f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId:	6e-09

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.9 bits (123), Expect = 6e-09
 Identities = 24/157 (15%), Positives = 49/157 (31%), Gaps = 8/157 (5%)

Query: 12  WVTWLSVDFYFTAYYTFRVLFVHTGPCISLVVRNLLFWQHKRDKLFKENKKSECKRLRDS 71
                  +    ++  +  +     P I +           ++   ++ + +  ++    
Sbjct: 190 DYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAE-- 247

Query: 72  NCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPI 131
              T M+I++V  FL+  +P A V                D   + +    FF   S   
Sbjct: 248 KEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQG------SDFGPIFMTIPAFFAKTSAVY 301

Query: 132 NFAIYCGMSRQFRETFKELFIRGAVQVGRRNGGGSSR 168
           N  IY  M++QFR         G   +G      +  
Sbjct: 302 NPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVS 338

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	184
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	99.83

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.83  E-value=3.1e-21  Score=149.86  Aligned_cols=129  Identities=18%  Similarity=0.219  Sum_probs=98.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhhhhhccccchhhHHHHHHHHHHHhHHHHHHHHHH
Q psy2988          20 FYFTAYYTFRVLFVHTGPCISLVVRNLLFWQHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILH   99 (184)
Q Consensus        20 ~~~~~y~~~~~~~~~~iP~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~   99 (184)
                      .....|.++...+.+++|++++.++|.++.+..+++....+  +...+.++++|+++++++++++|++||+|+.++.++.
T Consensus       198 ~~~~~~~~~~~~~~~~ip~~i~~~~y~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~  275 (348)
T d1u19a_         198 TNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQ--ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYI  275 (348)
T ss_dssp             GTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCSSC--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc--hhhhhHHHHhhHhheEEEeehHHHHHhhHHHhhhhee
Confidence            44557788888888999999999999999843333222221  1222346678999999999999999999999988775


Q ss_pred             HhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHHHhccccc
Q psy2988         100 VISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAV  156 (184)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~  156 (184)
                      .....      ......+..+..+++++||++||+||++++++||++++++++|+++
T Consensus       276 ~~~~~------~~~~~~~~~~~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~l~c~~~  326 (348)
T d1u19a_         276 FTHQG------SDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN  326 (348)
T ss_dssp             HHTTT------SCCCHHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHHHHHHHTSSCC
T ss_pred             eccCC------ccccHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhCCCCC
Confidence            54422      1123345567788899999999999999999999999999987654