Psyllid ID: psy3020

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
Protein Sequence
MTTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKAI
Secondary Structure (PSIPRED)
ccHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHcccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccHcccHHHHHHHHccccHHHHHccHHHHHHHHHHHHccHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MTTYSCLSYLGRYKESISTYEeglkldpnneQMKEAIKDVRNQemndmnrgdpfanlfsdpnifvqlqldprtkpflsdpsYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLdgtnhilfsNRSAAFAKAI
Flexible Loop (DISEMBL)
mttysclsylgrYKESISTYeeglkldpnneQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKAI
Low Complexity Region (SEG)
MTTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKAI
Disordered region (IsUnstruct)
***YSCLSYLGRYKESI*************************************ANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQK**SLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFS**********
Disordered Region (DISOPRED)
*TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFV********************************LEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKAI
Disordered Region (DISEMBL)
MTTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKAI
Disordered Region (DISPRO)
MTTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKAI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKAI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	150	2.2.26 [Sep-21-2011]
Q4R8N7	543	Stress-induced-phosphopro	N/A	N/A	0.913	0.252	0.292	5e-14
P31948	543	Stress-induced-phosphopro	yes	N/A	0.913	0.252	0.292	6e-14
O35814	543	Stress-induced-phosphopro	yes	N/A	0.9	0.248	0.300	9e-14
Q60864	543	Stress-induced-phosphopro	yes	N/A	0.9	0.248	0.300	1e-13
Q3ZBZ8	543	Stress-induced-phosphopro	yes	N/A	0.913	0.252	0.287	1e-13
O54981	543	Stress-induced-phosphopro	yes	N/A	0.9	0.248	0.295	5e-13
Q54DA8	564	Protein STIP1 homolog OS=	yes	N/A	0.606	0.161	0.358	6e-12
Q9USI5	591	Heat shock protein sti1 h	yes	N/A	0.633	0.160	0.326	5e-07
Q43468	569	Heat shock protein STI OS	no	N/A	0.193	0.050	0.55	1e-05
P15705	589	Heat shock protein STI1 O	yes	N/A	0.62	0.157	0.295	3e-05

>sp|Q4R8N7|STIP1_MACFA Stress-induced-phosphoprotein 1 OS=Macaca fascicularis GN=STIP1 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 92/195 (47%), Gaps = 58/195 (29%)

Query: 5   SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIF 64
           + L +L R++E+  TYEEGLK + NN Q+KE ++   N E     R   F N F+ PN++
Sbjct: 80  AALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ---NMEARLAER--KFMNPFNMPNLY 134

Query: 65  VQLQLDPRTKPFLSDPSYVQMIKEIQ----------KDPSLMTL---------------- 98
            +L+ DPRT+  LSDP+Y ++I++++          +DP +MT                 
Sbjct: 135 QKLESDPRTRTLLSDPTYRELIEQLRNKPSDLGTKLQDPRIMTTLSVLLGVDLGSMDEEE 194

Query: 99  -------------------------EAKISLLKDK--GNAALQANNFKEAIEAYSEAIKL 131
                                    E K   LK+K  GN A +  +F  A++ Y +A +L
Sbjct: 195 EVATPPPPPPPKKETKPEPMEEDLPENKKQALKEKELGNDAYKKKDFDTALKHYDKAKEL 254

Query: 132 DGTNHILFSNRSAAF 146
           D TN    +N++A +
Sbjct: 255 DPTNMTYITNQAAVY 269

Mediates the association of the molecular chaperones HSC70 and HSP90 (HSPCA and HSPCB).
Macaca fascicularis (taxid: 9541)

>sp|P31948|STIP1_HUMAN Stress-induced-phosphoprotein 1 OS=Homo sapiens GN=STIP1 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 92/195 (47%), Gaps = 58/195 (29%)

Query: 5   SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIF 64
           + L +L R++E+  TYEEGLK + NN Q+KE ++   N E     R   F N F+ PN++
Sbjct: 80  AALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ---NMEARLAER--KFMNPFNMPNLY 134

Query: 65  VQLQLDPRTKPFLSDPSYVQMIKEIQ----------KDPSLMTL---------------- 98
            +L+ DPRT+  LSDP+Y ++I++++          +DP +MT                 
Sbjct: 135 QKLESDPRTRTLLSDPTYRELIEQLRNKPSDLGTKLQDPRIMTTLSVLLGVDLGSMDEEE 194

Query: 99  -------------------------EAKISLLKDK--GNAALQANNFKEAIEAYSEAIKL 131
                                    E K   LK+K  GN A +  +F  A++ Y +A +L
Sbjct: 195 EIATPPPPPPPKKETKPEPMEEDLPENKKQALKEKELGNDAYKKKDFDTALKHYDKAKEL 254

Query: 132 DGTNHILFSNRSAAF 146
           D TN    +N++A +
Sbjct: 255 DPTNMTYITNQAAVY 269

Mediates the association of the molecular chaperones HSC70 and HSP90 (HSPCA and HSPCB).

Homo sapiens (taxid: 9606)

>sp|O35814|STIP1_RAT Stress-induced-phosphoprotein 1 OS=Rattus norvegicus GN=Stip1 PE=1 SV=1

 Score = 75.9 bits (185), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 92/193 (47%), Gaps = 58/193 (30%)

Query: 5   SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIF 64
           + L +L R++E+  TYEEGLK + NN Q+KE ++   N E     R   F N F+ PN++
Sbjct: 80  AALEFLNRFEEAKRTYEEGLKHEANNLQLKEGLQ---NMEARLAER--KFMNPFNLPNLY 134

Query: 65  VQLQLDPRTKPFLSDPSYVQMIKEIQ----------KDPSLMTL---------------- 98
            +L+ DPRT+  LSDP+Y ++I+++Q          +DP +MT                 
Sbjct: 135 QKLENDPRTRTLLSDPTYRELIEQLQNKPSDLGTKLQDPRVMTTLSVLLGVDLGSMDEEE 194

Query: 99  -------------------------EAKISLLKDK--GNAALQANNFKEAIEAYSEAIKL 131
                                    E K   LK+K  GN A +  +F +A++ Y +A +L
Sbjct: 195 EAATPPPPPPPKKEAKPEPMEEDLPENKKQALKEKELGNDAYKKKDFDKALKHYDKAKEL 254

Query: 132 DGTNHILFSNRSA 144
           D TN    +N++A
Sbjct: 255 DPTNMTYITNQAA 267

Mediates the association of the molecular chaperones HSC70 and HSP90 (HSPCA and HSPCB).

Rattus norvegicus (taxid: 10116)

>sp|Q60864|STIP1_MOUSE Stress-induced-phosphoprotein 1 OS=Mus musculus GN=Stip1 PE=1 SV=1

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 91/193 (47%), Gaps = 58/193 (30%)

Query: 5   SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIF 64
           + L +L R++E+  TYEEGLK + NN Q+KE ++   N E     R   F N F+ PN++
Sbjct: 80  AALEFLNRFEEAKRTYEEGLKHEANNLQLKEGLQ---NMEARLAER--KFMNPFNLPNLY 134

Query: 65  VQLQLDPRTKPFLSDPSYVQMIKEIQ----------KDPSLMTL---------------- 98
            +L+ DPRT+  LSDP+Y ++I+++Q          +DP +MT                 
Sbjct: 135 QKLENDPRTRSLLSDPTYRELIEQLQNKPSDLGTKLQDPRVMTTLSVLLGVDLGSMDEEE 194

Query: 99  -------------------------EAKISLLKDK--GNAALQANNFKEAIEAYSEAIKL 131
                                    E K   LK+K  GN A +  +F +A++ Y  A +L
Sbjct: 195 EAATPPPPPPPKKEPKPEPMEEDLPENKKQALKEKELGNDAYKKKDFDKALKHYDRAKEL 254

Query: 132 DGTNHILFSNRSA 144
           D TN    +N++A
Sbjct: 255 DPTNMTYITNQAA 267

Mediates the association of the molecular chaperones HSC70 and HSP90 (HSPCA and HSPCB).

Mus musculus (taxid: 10090)

>sp|Q3ZBZ8|STIP1_BOVIN Stress-induced-phosphoprotein 1 OS=Bos taurus GN=STIP1 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 91/195 (46%), Gaps = 58/195 (29%)

Query: 5   SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIF 64
           + L +L R++E+  TYEEGLK + NN Q+KE ++   N E     R   F N F+ PN++
Sbjct: 80  AALEFLNRFEEAKQTYEEGLKHEANNPQLKEGLQ---NMEARLAER--KFMNPFNMPNLY 134

Query: 65  VQLQLDPRTKPFLSDPSYVQMIKEIQ----------KDPSLMTL---------------- 98
            +L+ DPRTK  L+DP+Y ++I++++          +DP +MT                 
Sbjct: 135 QKLESDPRTKTLLADPTYRELIEQLRNKPSDLGTKLQDPRIMTTLSVLLGVDLGSMDEEE 194

Query: 99  -------------------------EAKISLLKDK--GNAALQANNFKEAIEAYSEAIKL 131
                                    E K   L++K  GN A +  +F  A++ Y +A  L
Sbjct: 195 EVATPPPPPPPKKETKPEPMEEDLPENKKQALREKELGNEAYKKKDFDTALKHYDKAKDL 254

Query: 132 DGTNHILFSNRSAAF 146
           D TN    +N++A +
Sbjct: 255 DPTNMTYITNQAAVY 269

Mediates the association of the molecular chaperones HSC70 and HSP90 (HSPCA and HSPCB).

Bos taurus (taxid: 9913)

>sp|O54981|STIP1_CRIGR Stress-induced-phosphoprotein 1 OS=Cricetulus griseus GN=STIP1 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 90/193 (46%), Gaps = 58/193 (30%)

Query: 5   SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIF 64
           + L +L R++E+  TYEEGLK + NN Q+KE ++   N E     R   F N F+ PN++
Sbjct: 80  AALEFLNRFEEAKRTYEEGLKHEANNLQLKEGLQ---NMEARLAER--KFMNPFNLPNLY 134

Query: 65  VQLQLDPRTKPFLSDPSYVQMIKEIQ----------KDPSLMTL---------------- 98
            +L+ DPRT+  LSDP+Y ++I++++          +DP +MT                 
Sbjct: 135 QKLENDPRTRTLLSDPTYRELIEQLRNKPSDLGTKIQDPRIMTTLSVLLGVDLGSMDEEE 194

Query: 99  -------------------------EAKISLLKDK--GNAALQANNFKEAIEAYSEAIKL 131
                                    E K   LK+K  GN A +  +F  A++ Y  A +L
Sbjct: 195 EAATPPPPPPSKKEAKPEPMEEDLPENKKQALKEKEMGNEAYKKKDFDMALKHYDRAKEL 254

Query: 132 DGTNHILFSNRSA 144
           D TN    +N++A
Sbjct: 255 DPTNMTYITNQAA 267

Mediates the association of the molecular chaperones HSC70 and HSP90 (HSPCA and HSPCB).

Cricetulus griseus (taxid: 10029)

>sp|Q54DA8|STIP1_DICDI Protein STIP1 homolog OS=Dictyostelium discoideum GN=sti1 PE=3 SV=1

 Score = 69.7 bits (169), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 57/92 (61%), Gaps = 1/92 (1%)

Query: 6   CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFV 65
            L  LGR++E+  + E GLK+DP N+Q+++A++D +       +     ANLFS  N+  
Sbjct: 85  ALYKLGRFEEAEKSAEAGLKIDPTNQQLEDALEDAQYATTGAKDPASAMANLFSAQNL-T 143

Query: 66  QLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMT 97
           +L+ +P+T PF   P +V ++ +I K+PSL +
Sbjct: 144 KLRFNPKTAPFFQQPDFVAIMDQISKNPSLFS 175

Dictyostelium discoideum (taxid: 44689)

>sp|Q9USI5|STI1_SCHPO Heat shock protein sti1 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sti1 PE=3 SV=1

 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 6/101 (5%)

Query: 5   SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV---RNQEMNDMNRGDPFANL---F 58
           + L  LG    + S YEEGLK D NN Q+   +K V   + Q  +     +PFA L    
Sbjct: 78  AALHGLGDLDAARSAYEEGLKHDANNAQLLNGLKSVEAAQTQAASGAGGFNPFAKLGSQL 137

Query: 59  SDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLE 99
           SDP    +L  +P T   L+D +++  +++IQ++P  +  E
Sbjct: 138 SDPKFMEKLASNPETASLLADSAFMAKLQKIQQNPGSIMAE 178

May play a role in mediating the heat shock response of some HSP70 genes.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q43468|STIP_SOYBN Heat shock protein STI OS=Glycine max GN=STI PE=2 SV=1

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/40 (55%), Positives = 29/40 (72%)

Query: 106 KDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAA 145
           K KGNAA  A +F  A+  +S+AI L  +NH+L+SNRSAA
Sbjct: 6   KAKGNAAFSAGDFAAAVRHFSDAIALSPSNHVLYSNRSAA 45

Glycine max (taxid: 3847)

>sp|P15705|STI1_YEAST Heat shock protein STI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=STI1 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 12/105 (11%)

Query: 10  LGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQ 68
           LG   E+ S Y++ L+LD +N+  KE +  V R Q+            LF+DPN+   L+
Sbjct: 87  LGDLDEAESNYKKALELDASNKAAKEGLDQVHRTQQARQAQPDLGLTQLFADPNLIENLK 146

Query: 69  LDPRTKPFLSDPSYVQMI-----------KEIQKDPSLMTLEAKI 102
            +P+T   + DP  V  +           +++  DP LMT+ A +
Sbjct: 147 KNPKTSEMMKDPQLVAKLIGYKQNPQAIGQDLFTDPRLMTIMATL 191

May play a role in mediating the heat shock response of some HSP70 genes. It is required for optimal growth of yeast cells at both low and high temperature.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
332025474	512	Stress-induced-phosphoprotein 1 [Acromyr	0.586	0.171	0.436	1e-16
322786074	538	hypothetical protein SINV_09553 [Solenop	0.553	0.154	0.471	1e-16
270016347	365	hypothetical protein TcasGA2_TC002163 [T	0.913	0.375	0.287	4e-15
91094403	362	PREDICTED: similar to Stress-induced-pho	0.913	0.378	0.287	4e-15
409994629	552	heat shock 90/70 organizing protein [Fra	0.553	0.150	0.395	9e-14
432899790	542	PREDICTED: stress-induced-phosphoprotein	0.913	0.252	0.273	2e-13
116786888	568	unknown [Picea sitchensis]	0.586	0.154	0.393	2e-13
310693634	542	stress-induced phosphoprotein 1 [Miichth	0.9	0.249	0.295	3e-13
156552012	549	PREDICTED: stress-induced-phosphoprotein	0.62	0.169	0.378	5e-13
56090148	542	stress-induced-phosphoprotein 1 [Danio r	0.913	0.252	0.293	5e-13

>gi|332025474|gb|EGI65638.1| Stress-induced-phosphoprotein 1 [Acromyrmex echinatior]

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 66/94 (70%), Gaps = 6/94 (6%)

Query: 5   SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIF 64
           S L+YLGRY ESI  YE+GL+LDPNN Q++ ++ +VR Q      +     N F+ P+IF
Sbjct: 74  SALAYLGRYDESIRAYEKGLQLDPNNPQLRSSLAEVRAQ------KTAAVTNPFNSPDIF 127

Query: 65  VQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTL 98
           ++L  DPRTK +LSDP Y+++++E++ +P  +++
Sbjct: 128 LKLASDPRTKGYLSDPEYMKLLQELRTNPQSLSI 161

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322786074|gb|EFZ12685.1| hypothetical protein SINV_09553 [Solenopsis invicta]

 Score = 91.3 bits (225), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 62/89 (69%), Gaps = 6/89 (6%)

Query: 5   SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIF 64
           S L+YLGRY ESI  YE+GL+LDP+N Q++  + +VR Q      R     N F+ P+IF
Sbjct: 77  SALAYLGRYDESIRAYEKGLQLDPSNSQLRSGLAEVRAQ------RTAASTNPFNSPDIF 130

Query: 65  VQLQLDPRTKPFLSDPSYVQMIKEIQKDP 93
           V+L  DPRTK +LSDP Y+++++E++ +P
Sbjct: 131 VKLANDPRTKGYLSDPEYIKLLQELRNNP 159

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270016347|gb|EFA12793.1| hypothetical protein TcasGA2_TC002163 [Tribolium castaneum]

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 94/191 (49%), Gaps = 54/191 (28%)

Query: 5   SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIF 64
           + L+YLGR  E+I+TYE GL+++P N Q++E +++V+ Q+         F N F+ P++ 
Sbjct: 80  AALAYLGRLDEAIATYERGLQIEPANPQLQEGLQEVKAQKT-----AKGFPNPFNRPDLM 134

Query: 65  VQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLM-----------TLEAKISL--------- 104
            +L+ DPRTKP L DP+YV  +  ++ +P+L+           TL   I +         
Sbjct: 135 EKLRGDPRTKPLLDDPNYVATLHMLKTNPNLLGQKLQDPNILTTLSVLIGIDPGEEPMET 194

Query: 105 -----------------------------LKDKGNAALQANNFKEAIEAYSEAIKLDGTN 135
                                         K++GN   +  NF++AIE Y++AI+ D T+
Sbjct: 195 EPVYTPPKKPEPKKEPEPDLPENKKLAKAAKEQGNEFYKKKNFEKAIEFYNQAIEHDPTD 254

Query: 136 HILFSNRSAAF 146
              ++N +A F
Sbjct: 255 ITFYNNLAAVF 265

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91094403|ref|XP_967038.1| PREDICTED: similar to Stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein), partial [Tribolium castaneum]

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 94/191 (49%), Gaps = 54/191 (28%)

Query: 5   SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIF 64
           + L+YLGR  E+I+TYE GL+++P N Q++E +++V+ Q+         F N F+ P++ 
Sbjct: 80  AALAYLGRLDEAIATYERGLQIEPANPQLQEGLQEVKAQKT-----AKGFPNPFNRPDLM 134

Query: 65  VQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLM-----------TLEAKISL--------- 104
            +L+ DPRTKP L DP+YV  +  ++ +P+L+           TL   I +         
Sbjct: 135 EKLRGDPRTKPLLDDPNYVATLHMLKTNPNLLGQKLQDPNILTTLSVLIGIDPGEEPMET 194

Query: 105 -----------------------------LKDKGNAALQANNFKEAIEAYSEAIKLDGTN 135
                                         K++GN   +  NF++AIE Y++AI+ D T+
Sbjct: 195 EPVYTPPKKPEPKKEPEPDLPENKKLAKAAKEQGNEFYKKKNFEKAIEFYNQAIEHDPTD 254

Query: 136 HILFSNRSAAF 146
              ++N +A F
Sbjct: 255 ITFYNNLAAVF 265

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|409994629|gb|AFV50602.1| heat shock 90/70 organizing protein [Frankliniella occidentalis] gi|442769471|gb|AGC70809.1| heat shock 90/70 organizing protein [Frankliniella occidentalis]

 Score = 81.6 bits (200), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 62/96 (64%), Gaps = 13/96 (13%)

Query: 5   SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPF------ANLF 58
           S L+YLGR  E+I  YEEGL++DP N Q+ E +K+V+        +  PF      A+LF
Sbjct: 80  SALAYLGRTDEAIEAYEEGLRIDPTNAQLAEGLKEVK-------AKNPPFPGAGLNADLF 132

Query: 59  SDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPS 94
             P++FV+L+ +P+T+ FL DP Y++++ ++  DP+
Sbjct: 133 RSPDLFVKLRNNPQTRAFLDDPEYLKIVTKLHTDPT 168

Source: Frankliniella occidentalis

Species: Frankliniella occidentalis

Genus: Frankliniella

Family: Thripidae

Order: Thysanoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432899790|ref|XP_004076640.1| PREDICTED: stress-induced-phosphoprotein 1-like [Oryzias latipes]

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 95/194 (48%), Gaps = 57/194 (29%)

Query: 5   SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIF 64
           + L +LGR +++ +TY+EGL+ +PNN+Q+KE ++ +  +    +       N F+ PN++
Sbjct: 80  AALEFLGRLEDAKTTYQEGLRHEPNNQQLKEGLQSIEARLAEKL-----MMNPFAMPNLY 134

Query: 65  VQLQLDPRTKPFLSDPSYVQMIKEIQKDPS-----------LMTLEAKISL--------- 104
            +L+ DPRT+  LSDPSY +++++++  PS           + TL   + L         
Sbjct: 135 QKLENDPRTRELLSDPSYRELLEQLRNKPSELGTKLQDPRVMTTLSVLLGLNLSEMEEEE 194

Query: 105 ------------------------------LKDK--GNAALQANNFKEAIEAYSEAIKLD 132
                                         LK+K  GN+A +  +F+ A++ Y EA+K D
Sbjct: 195 ERSPPPPPKPKETPPPPPKEEDLPENKRMALKEKELGNSAYKNKDFESALKHYEEAMKHD 254

Query: 133 GTNHILFSNRSAAF 146
            TN    SN++A +
Sbjct: 255 PTNMTYLSNQAAVY 268

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|116786888|gb|ABK24283.1| unknown [Picea sitchensis]

 Score = 80.5 bits (197), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 60/89 (67%), Gaps = 1/89 (1%)

Query: 10  LGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQL 69
           LG+Y ++IS+Y++GL+LDP+NE +K  + D +    +      PF N+F  P ++ +L  
Sbjct: 83  LGKYDDAISSYKKGLELDPSNEALKSGLADAQAASRSRAP-SSPFGNIFQGPELWAKLTA 141

Query: 70  DPRTKPFLSDPSYVQMIKEIQKDPSLMTL 98
           DP+T+ FL  P +V+MI+++QK+P+ M L
Sbjct: 142 DPKTRMFLQQPDFVKMIQDVQKNPNNMNL 170

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|310693634|gb|ADP05116.1| stress-induced phosphoprotein 1 [Miichthys miiuy]

 Score = 80.1 bits (196), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 58/196 (29%), Positives = 98/196 (50%), Gaps = 61/196 (31%)

Query: 5   SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV--RNQEMNDMNRGDPFANLFSDPN 62
           + L +LGR +++ +TY EG++ +PNN+Q+KE ++++  R  E + MN   PFA     PN
Sbjct: 80  AALEFLGRLEDAKATYHEGIRQEPNNQQLKEGLQNIEARLAEKSMMN---PFAM----PN 132

Query: 63  IFVQLQLDPRTKPFLSDPSYVQMIKEIQ----------KDPSLMTL-------------- 98
           ++ +L+ D RT+  LSDPSY +++++++          +DP +MT               
Sbjct: 133 LYQKLENDSRTRELLSDPSYRELLEQLRNKPSELGTKLQDPRVMTTLSVLLGLNLSEMEE 192

Query: 99  --------------------------EAKISLLKDK--GNAALQANNFKEAIEAYSEAIK 130
                                     E +   LK+K  GNAA +  +F+ A++ Y EA+K
Sbjct: 193 EEEPTPPPPPKPKETQPPPPKEEDLPENERKALKEKELGNAAYKNKDFETALKHYEEAVK 252

Query: 131 LDGTNHILFSNRSAAF 146
            D TN    SN++A F
Sbjct: 253 HDPTNMTYISNQAAVF 268

Source: Miichthys miiuy

Species: Miichthys miiuy

Genus: Miichthys

Family: Sciaenidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|156552012|ref|XP_001603429.1| PREDICTED: stress-induced-phosphoprotein 1-like [Nasonia vitripennis]

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 61/95 (64%), Gaps = 2/95 (2%)

Query: 5   SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQE--MNDMNRGDPFANLFSDPN 62
           S L+YLGRY +SI TY +GL LDP NEQ++  +++V+ Q+   +  N      N F   +
Sbjct: 80  SALAYLGRYDDSIETYSKGLLLDPRNEQLQSGLEEVKAQKNSQSQFNSQGALRNPFVGAD 139

Query: 63  IFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMT 97
           +  +L+ DPRTK +L DP Y++M+ + + +P+ ++
Sbjct: 140 VMTKLRNDPRTKAYLDDPEYIKMLDKFRTNPTSLS 174

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|56090148|ref|NP_001007767.1| stress-induced-phosphoprotein 1 [Danio rerio] gi|55715903|gb|AAH85642.1| Stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein) [Danio rerio]

 Score = 79.3 bits (194), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 92/194 (47%), Gaps = 57/194 (29%)

Query: 5   SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIF 64
           + L +LGR +++ +TY+EGL+ +P+N+Q+KE +     Q M          N FS PN++
Sbjct: 80  AALEFLGRLEDAKATYQEGLRQEPSNQQLKEGL-----QNMEARLAEKKMMNPFSIPNLY 134

Query: 65  VQLQLDPRTKPFLSDPSYVQMIKEIQ----------KDPSLMTL---------------- 98
            +L+ D RT+  LSDPSY +++++++          +DP +MT                 
Sbjct: 135 EKLEGDSRTRALLSDPSYRELLEQLRNKPSELGTKLQDPRVMTTLSVLLGLDLSGMDEEE 194

Query: 99  ------------------------EAKISLLKDK--GNAALQANNFKEAIEAYSEAIKLD 132
                                   E K   LK+K  GNAA +  +F  A++ Y EAIK D
Sbjct: 195 EPTPPPPPKPKETAPPPPKEEDLPENKRMALKEKELGNAAYKKKDFATALKHYEEAIKHD 254

Query: 133 GTNHILFSNRSAAF 146
            TN    SN++A +
Sbjct: 255 PTNMTYLSNQAAVY 268

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
UNIPROTKB|Q3ZBZ8	543	STIP1 "Stress-induced-phosphop	0.566	0.156	0.411	2.7e-20
MGI|MGI:109130	543	Stip1 "stress-induced phosphop	0.566	0.156	0.422	3.5e-20
UNIPROTKB|P31948	543	STIP1 "Stress-induced-phosphop	0.566	0.156	0.411	3.5e-20
RGD|621599	543	Stip1 "stress-induced phosphop	0.566	0.156	0.422	3.5e-20
TAIR|locus:2034620	572	Hop1 "Hop1" [Arabidopsis thali	0.613	0.160	0.336	4e-19
ZFIN|ZDB-GENE-041121-17	542	stip1 "stress-induced-phosphop	0.566	0.156	0.366	1.1e-18
DICTYBASE|DDB_G0292404	564	sti1 "stress-induced-phosphopr	0.613	0.163	0.354	2.8e-17
TAIR|locus:2026197	571	Hop2 "Hop2" [Arabidopsis thali	0.593	0.155	0.333	4.9e-17
TAIR|locus:2139109	558	Hop3 "AT4G12400" [Arabidopsis	0.6	0.161	0.293	2.1e-16
CGD|CAL0002444	590	STI1 [Candida albicans (taxid:	0.573	0.145	0.325	1.8e-14

UNIPROTKB|Q3ZBZ8 STIP1 "Stress-induced-phosphoprotein 1" [Bos taurus (taxid:9913)]

 Score = 182 (69.1 bits), Expect = 2.7e-20, Sum P(2) = 2.7e-20
 Identities = 37/90 (41%), Positives = 59/90 (65%)

Query:     5 SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIF 64
             + L +L R++E+  TYEEGLK + NN Q+KE ++   N E     R   F N F+ PN++
Sbjct:    80 AALEFLNRFEEAKQTYEEGLKHEANNPQLKEGLQ---NMEARLAER--KFMNPFNMPNLY 134

Query:    65 VQLQLDPRTKPFLSDPSYVQMIKEIQKDPS 94
              +L+ DPRTK  L+DP+Y ++I++++  PS
Sbjct:   135 QKLESDPRTKTLLADPTYRELIEQLRNKPS 164

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:109130 Stip1 "stress-induced phosphoprotein 1" [Mus musculus (taxid:10090)]

 Score = 181 (68.8 bits), Expect = 3.5e-20, Sum P(2) = 3.5e-20
 Identities = 38/90 (42%), Positives = 59/90 (65%)

Query:     5 SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIF 64
             + L +L R++E+  TYEEGLK + NN Q+KE ++   N E     R   F N F+ PN++
Sbjct:    80 AALEFLNRFEEAKRTYEEGLKHEANNLQLKEGLQ---NMEARLAER--KFMNPFNLPNLY 134

Query:    65 VQLQLDPRTKPFLSDPSYVQMIKEIQKDPS 94
              +L+ DPRT+  LSDP+Y ++I+++Q  PS
Sbjct:   135 QKLENDPRTRSLLSDPTYRELIEQLQNKPS 164

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0030544 "Hsp70 protein binding" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0051087 "chaperone binding" evidence=ISO

UNIPROTKB|P31948 STIP1 "Stress-induced-phosphoprotein 1" [Homo sapiens (taxid:9606)]

 Score = 181 (68.8 bits), Expect = 3.5e-20, Sum P(2) = 3.5e-20
 Identities = 37/90 (41%), Positives = 59/90 (65%)

Query:     5 SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIF 64
             + L +L R++E+  TYEEGLK + NN Q+KE ++   N E     R   F N F+ PN++
Sbjct:    80 AALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ---NMEARLAER--KFMNPFNMPNLY 134

Query:    65 VQLQLDPRTKPFLSDPSYVQMIKEIQKDPS 94
              +L+ DPRT+  LSDP+Y ++I++++  PS
Sbjct:   135 QKLESDPRTRTLLSDPTYRELIEQLRNKPS 164

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

GO:0005634 "nucleus" evidence=TAS

GO:0005794 "Golgi apparatus" evidence=TAS

GO:0006950 "response to stress" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

RGD|621599 Stip1 "stress-induced phosphoprotein 1" [Rattus norvegicus (taxid:10116)]

 Score = 181 (68.8 bits), Expect = 3.5e-20, Sum P(2) = 3.5e-20
 Identities = 38/90 (42%), Positives = 59/90 (65%)

Query:     5 SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIF 64
             + L +L R++E+  TYEEGLK + NN Q+KE ++   N E     R   F N F+ PN++
Sbjct:    80 AALEFLNRFEEAKRTYEEGLKHEANNLQLKEGLQ---NMEARLAER--KFMNPFNLPNLY 134

Query:    65 VQLQLDPRTKPFLSDPSYVQMIKEIQKDPS 94
              +L+ DPRT+  LSDP+Y ++I+++Q  PS
Sbjct:   135 QKLENDPRTRTLLSDPTYRELIEQLQNKPS 164

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0008150 "biological_process" evidence=ND

GO:0030544 "Hsp70 protein binding" evidence=IPI

GO:0043234 "protein complex" evidence=IDA

GO:0051087 "chaperone binding" evidence=IPI

TAIR|locus:2034620 Hop1 "Hop1" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 4.0e-19, Sum P(2) = 4.0e-19
 Identities = 31/92 (33%), Positives = 53/92 (57%)

Query:    10 LGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQL 69
             L +++ +++ Y++GL +DP NE +K  + D            +PF + F  P ++ +L  
Sbjct:    83 LNQFELAVTAYKKGLDVDPTNEALKSGLADAEASVARSRAAPNPFGDAFQGPEMWTKLTS 142

Query:    70 DPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAK 101
             DP T+ FL  P +V M++EIQK+PS + L  K
Sbjct:   143 DPSTRGFLQQPDFVNMMQEIQKNPSSLNLYLK 174

GO:0005737 "cytoplasm" evidence=ISM

GO:0005829 "cytosol" evidence=IDA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

ZFIN|ZDB-GENE-041121-17 stip1 "stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein)" [Danio rerio (taxid:7955)]

 Score = 168 (64.2 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
 Identities = 33/90 (36%), Positives = 60/90 (66%)

Query:     5 SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIF 64
             + L +LGR +++ +TY+EGL+ +P+N+Q+KE ++   N E     +     N FS PN++
Sbjct:    80 AALEFLGRLEDAKATYQEGLRQEPSNQQLKEGLQ---NMEARLAEK--KMMNPFSIPNLY 134

Query:    65 VQLQLDPRTKPFLSDPSYVQMIKEIQKDPS 94
              +L+ D RT+  LSDPSY +++++++  PS
Sbjct:   135 EKLEGDSRTRALLSDPSYRELLEQLRNKPS 164

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0292404 sti1 "stress-induced-phosphoprotein 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 173 (66.0 bits), Expect = 2.8e-17, Sum P(2) = 2.8e-17
 Identities = 33/93 (35%), Positives = 58/93 (62%)

Query:     5 SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIF 64
             + L  LGR++E+  + E GLK+DP N+Q+++A++D +       +     ANLFS  N+ 
Sbjct:    84 NALYKLGRFEEAEKSAEAGLKIDPTNQQLEDALEDAQYATTGAKDPASAMANLFSAQNL- 142

Query:    65 VQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMT 97
              +L+ +P+T PF   P +V ++ +I K+PSL +
Sbjct:   143 TKLRFNPKTAPFFQQPDFVAIMDQISKNPSLFS 175

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0030544 "Hsp70 protein binding" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2026197 Hop2 "Hop2" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 4.9e-17, Sum P(2) = 4.9e-17
 Identities = 30/90 (33%), Positives = 55/90 (61%)

Query:    10 LGRYKESISTYEEGLKLDPNNEQMKEAIKDVR-NQEMNDMNRGDPFANLFSDPNIFVQLQ 68
             L ++ E++  Y +GL++DP+NE +K  + D + +   +  +  +PF + F  P ++ +L 
Sbjct:    83 LNQFDEAVEAYSKGLEIDPSNEGLKSGLADAKASASRSRASAPNPFGDAFQGPEMWSKLT 142

Query:    69 LDPRTKPFLSDPSYVQMIKEIQKDPSLMTL 98
              DP T+  L  P +V M+KEIQ++PS + L
Sbjct:   143 ADPSTRGLLKQPDFVNMMKEIQRNPSNLNL 172

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2139109 Hop3 "AT4G12400" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
 Identities = 27/92 (29%), Positives = 57/92 (61%)

Query:    10 LGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQL 69
             L ++ E++ +Y++GL++DP+NE +K  + D     ++  ++ +PF + F    ++ +L  
Sbjct:    83 LSKFDEAVDSYKKGLEIDPSNEMLKSGLADASRSRVS--SKSNPFVDAFQGKEMWEKLTA 140

Query:    70 DPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAK 101
             DP T+ +L    +V+ +KEIQ++P+ + L  K
Sbjct:   141 DPGTRVYLEQDDFVKTMKEIQRNPNNLNLYMK 172

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

CGD|CAL0002444 STI1 [Candida albicans (taxid:5476)]

 Score = 158 (60.7 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
 Identities = 29/89 (32%), Positives = 56/89 (62%)

Query:    10 LGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMN---DMNRGDPFANLFSDPNIFVQ 66
             LG + ++ S YE+ L+LDPNN   KE +K V +  ++   D ++   F  + +DPN++ +
Sbjct:    86 LGNFDQAKSNYEKCLELDPNNAMAKEGLKSVESALVSGGGDDDKDLGFGKILNDPNLYTK 145

Query:    67 LQLDPRTKPFLSDPSYVQMIKEIQKDPSL 95
             L+ +P+T  F++DP +V  ++ ++ +P L
Sbjct:   146 LKNNPKTSEFMNDPQFVAKLERLKTNPQL 174

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

GO:0042030 "ATPase inhibitor activity" evidence=IEA

GO:0051879 "Hsp90 protein binding" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	150
pfam13414	69	pfam13414, TPR_11, TPR repeat	6e-08
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-06
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	5e-04
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	8e-04
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	0.001

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 46.5 bits (111), Expect = 6e-08
 Identities = 18/45 (40%), Positives = 28/45 (62%)

Query: 104 LLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
            LK+ GNA  +  ++ EAIEAY +A++LD  N   + N + A+ K
Sbjct: 5   ALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLK 49

Length = 69

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 42.4 bits (100), Expect = 5e-06
 Identities = 15/45 (33%), Positives = 26/45 (57%)

Query: 104 LLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
            L + GN   +  ++ EA+E Y +A++LD  N   + N +AA+ K
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK 46

Length = 100

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 35.5 bits (83), Expect = 5e-04
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTN 135
           L + GNA L+   + EA+E Y +A++L+  N
Sbjct: 4   LYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 34.7 bits (81), Expect = 8e-04
 Identities = 13/31 (41%), Positives = 21/31 (67%)

Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTN 135
           L + GNA L+  ++ EA+E Y +A++LD  N
Sbjct: 4   LYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 34.0 bits (79), Expect = 0.001
 Identities = 12/32 (37%), Positives = 21/32 (65%)

Query: 104 LLKDKGNAALQANNFKEAIEAYSEAIKLDGTN 135
            L + G A  +  +++EA+EAY +A++LD  N
Sbjct: 3   ALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	150
PRK15359	144	type III secretion system chaperone protein SscB;	99.74
KOG0553|consensus	304		99.7
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.64
KOG4626|consensus	966		99.64
KOG4626|consensus	966		99.63
KOG0548|consensus	539		99.59
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.56
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.56
KOG1126|consensus	638		99.56
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.51
PRK11189	296	lipoprotein NlpI; Provisional	99.5
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.47
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.46
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.45
PRK15359	144	type III secretion system chaperone protein SscB;	99.45
PRK11189	296	lipoprotein NlpI; Provisional	99.43
PRK12370	553	invasion protein regulator; Provisional	99.43
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.41
PRK12370	553	invasion protein regulator; Provisional	99.41
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.41
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.4
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.35
PLN02789	320	farnesyltranstransferase	99.35
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.35
KOG0548|consensus	539		99.35
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.35
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.34
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.34
KOG0624|consensus	504		99.33
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.33
KOG1155|consensus	559		99.32
KOG1125|consensus	579		99.32
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.31
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.31
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.3
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.29
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.29
KOG1126|consensus	638		99.28
KOG1155|consensus	559		99.28
KOG0550|consensus	486		99.25
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.24
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.23
KOG2002|consensus	1018		99.23
KOG3060|consensus	289		99.23
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.21
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.21
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.2
KOG0547|consensus	606		99.2
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.18
KOG2076|consensus	895		99.18
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.17
KOG1125|consensus	579		99.17
KOG0547|consensus	606		99.16
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	99.16
KOG0624|consensus	504		99.13
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.12
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.12
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.1
KOG4162|consensus	799		99.1
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.09
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.09
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.07
PRK14720	906	transcript cleavage factor/unknown domain fusion p	99.06
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.06
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.02
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.02
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.01
KOG1173|consensus	611		99.0
PLN02789	320	farnesyltranstransferase	99.0
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.98
KOG3785|consensus	557		98.97
PRK10803	263	tol-pal system protein YbgF; Provisional	98.97
PRK15331	165	chaperone protein SicA; Provisional	98.97
KOG0550|consensus	486		98.96
KOG0543|consensus	397		98.94
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.94
KOG4648|consensus	536		98.92
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.92
KOG1129|consensus	478		98.91
PRK14574	822	hmsH outer membrane protein; Provisional	98.9
KOG2002|consensus	1018		98.9
PRK14574	822	hmsH outer membrane protein; Provisional	98.89
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.87
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.87
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.85
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.84
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.82
PF13428	44	TPR_14: Tetratricopeptide repeat	98.8
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.8
PF13428	44	TPR_14: Tetratricopeptide repeat	98.8
KOG1156|consensus	700		98.78
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.77
KOG1128|consensus	777		98.74
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.73
KOG1156|consensus	700		98.72
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.7
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.69
KOG4162|consensus	799		98.69
PF13371	73	TPR_9: Tetratricopeptide repeat	98.67
KOG4340|consensus	459		98.67
KOG4642|consensus	284		98.65
KOG2076|consensus	895		98.65
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.65
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.64
KOG0553|consensus	304		98.64
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.64
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.63
KOG4555|consensus	175		98.62
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.61
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.6
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.59
PRK11906	458	transcriptional regulator; Provisional	98.58
KOG1173|consensus	611		98.57
KOG4234|consensus	271		98.57
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.57
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.55
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.53
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.52
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.5
KOG0543|consensus	397		98.5
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.49
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.48
KOG1127|consensus	1238		98.47
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.46
KOG1174|consensus	564		98.44
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.42
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.41
PF13371	73	TPR_9: Tetratricopeptide repeat	98.41
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.41
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	98.4
PRK11906	458	transcriptional regulator; Provisional	98.39
KOG4648|consensus	536		98.39
PF12688	120	TPR_5: Tetratrico peptide repeat	98.39
KOG1129|consensus	478		98.37
PF13512	142	TPR_18: Tetratricopeptide repeat	98.36
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.35
PRK15331	165	chaperone protein SicA; Provisional	98.34
KOG1840|consensus	508		98.34
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.33
KOG1174|consensus	564		98.33
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.33
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.3
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.3
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.3
KOG0376|consensus	476		98.28
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.26
KOG1127|consensus	1238		98.25
KOG1128|consensus	777		98.24
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.22
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.22
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.2
PF13431	34	TPR_17: Tetratricopeptide repeat	98.19
KOG0495|consensus	913		98.16
KOG2003|consensus	840		98.15
KOG1840|consensus	508		98.13
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.12
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	98.1
PF13431	34	TPR_17: Tetratricopeptide repeat	98.09
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.05
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.04
KOG2003|consensus	840		98.01
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.0
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.0
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.99
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.95
KOG0551|consensus	390		97.94
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.91
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.88
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.88
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.88
KOG3060|consensus	289		97.82
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.8
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.77
KOG0495|consensus	913		97.75
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.74
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.74
KOG2796|consensus	366		97.71
KOG4234|consensus	271		97.69
PF13512	142	TPR_18: Tetratricopeptide repeat	97.68
KOG4642|consensus	284		97.67
KOG0545|consensus	329		97.66
PRK10803	263	tol-pal system protein YbgF; Provisional	97.66
PF12688	120	TPR_5: Tetratrico peptide repeat	97.65
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	97.63
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.61
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	97.6
KOG1308|consensus	377		97.54
KOG1130|consensus	639		97.51
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.5
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.47
PLN03077	857	Protein ECB2; Provisional	97.42
KOG2376|consensus	652		97.4
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.33
KOG4555|consensus	175		97.33
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.31
KOG2376|consensus	652		97.29
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.28
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.2
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.2
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.19
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.17
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.15
PRK10941	269	hypothetical protein; Provisional	97.05
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.02
KOG2471|consensus	696		97.02
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.94
KOG1130|consensus	639		96.93
KOG0545|consensus	329		96.88
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.87
KOG3081|consensus	299		96.77
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.76
KOG3824|consensus	472		96.73
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	96.71
PLN03218	1060	maturation of RBCL 1; Provisional	96.71
PLN03218	1060	maturation of RBCL 1; Provisional	96.62
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.61
KOG2053|consensus	932		96.57
KOG2796|consensus	366		96.55
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.54
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	96.48
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.45
KOG0376|consensus	476		96.4
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.36
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	96.33
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.32
KOG4507|consensus	886		96.29
KOG3824|consensus	472		96.27
PRK04841	903	transcriptional regulator MalT; Provisional	96.25
KOG3785|consensus	557		96.14
KOG4340|consensus	459		96.13
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.13
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.09
PLN03077	857	Protein ECB2; Provisional	96.01
KOG0551|consensus	390		96.01
KOG1941|consensus	518		95.97
KOG2610|consensus	491		95.84
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	95.73
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.68
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.62
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	95.55
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.54
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.46
KOG3081|consensus	299		95.45
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.44
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	95.33
PRK10941	269	hypothetical protein; Provisional	95.32
KOG1915|consensus	677		95.17
KOG2610|consensus	491		95.14
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.94
KOG1310|consensus	758		94.84
PRK04841	903	transcriptional regulator MalT; Provisional	94.59
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	94.48
KOG2396|consensus	568		94.46
KOG3364|consensus	149		94.44
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	94.38
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	94.24
KOG1915|consensus	677		94.21
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	94.12
KOG1586|consensus	288		93.8
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	93.79
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	93.21
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	92.96
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	92.75
KOG1308|consensus	377		92.42
KOG0530|consensus	318		92.37
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	92.15
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	92.04
KOG3364|consensus	149		91.87
COG4700	251	Uncharacterized protein conserved in bacteria cont	91.81
COG2912	269	Uncharacterized conserved protein [Function unknow	91.47
PHA02537	230	M terminase endonuclease subunit; Provisional	91.33
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	91.21
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	91.06
KOG0529|consensus	421		90.65
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	90.57
KOG2471|consensus	696		90.54
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	90.4
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	90.32
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	90.24
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	90.16
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	90.13
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	90.09
KOG2053|consensus	932		90.06
COG4976	287	Predicted methyltransferase (contains TPR repeat)	89.94
COG3947	361	Response regulator containing CheY-like receiver a	89.92
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	89.77
PF12854	34	PPR_1: PPR repeat	89.6
PF04212	69	MIT: MIT (microtubule interacting and transport) d	88.99
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	88.82
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	88.66
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	88.53
PF01239	31	PPTA: Protein prenyltransferase alpha subunit repe	88.45
PF13041	50	PPR_2: PPR repeat family	88.42
KOG1550|consensus	552		88.19
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	88.07
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	87.61
COG5191	435	Uncharacterized conserved protein, contains HAT (H	87.52
COG2912	269	Uncharacterized conserved protein [Function unknow	87.46
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	87.32
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	87.07
KOG4814|consensus	872		86.93
PF02064	121	MAS20: MAS20 protein import receptor; InterPro: IP	86.59
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	85.81
KOG1070|consensus	1710		85.64
KOG1941|consensus	518		85.63
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	85.48
KOG1070|consensus	1710		85.48
KOG4507|consensus	886		84.53
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	84.29
KOG1585|consensus	308		84.26
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	84.1
KOG3616|consensus	1636		83.41
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	83.41
KOG0985|consensus	1666		83.05
PF04212	69	MIT: MIT (microtubule interacting and transport) d	82.84
PF02064	121	MAS20: MAS20 protein import receptor; InterPro: IP	82.7
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	82.63
KOG0546|consensus	372		82.44
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	81.95
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	81.91
KOG2300|consensus	629		81.43
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	81.34
COG3629	280	DnrI DNA-binding transcriptional activator of the	81.19
COG3118	304	Thioredoxin domain-containing protein [Posttransla	81.09
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	80.92
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	80.66
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	80.51
PF13812	34	PPR_3: Pentatricopeptide repeat domain	80.07

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.74  E-value=8.6e-17  Score=105.31  Aligned_cols=109  Identities=15%  Similarity=0.037  Sum_probs=100.2

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      ..|.++...|++++|+..|++++.++|++..++..+|.+ ..+|        .+.+|+  ..+.+++.++|++       
T Consensus        29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g--------~~~~A~--~~y~~Al~l~p~~-------   91 (144)
T PRK15359         29 ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLK--------EYTTAI--NFYGHALMLDASH-------   91 (144)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh--------hHHHHH--HHHHHHHhcCCCC-------
Confidence            368899999999999999999999999999999999999 9999        667788  7888888888865       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                                           +.++.++|.++...|++++|+..|.++++++|+++..+.+++.+...
T Consensus        92 ---------------------~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~  138 (144)
T PRK15359         92 ---------------------PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM  138 (144)
T ss_pred             ---------------------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence                                 77899999999999999999999999999999999999999988754

>KOG0553|consensus

Probab=99.70  E-value=1.5e-16  Score=112.52  Aligned_cols=108  Identities=27%  Similarity=0.310  Sum_probs=99.0

Q ss_pred             hHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHH
Q psy3020           4 YSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSY   82 (150)
Q Consensus         4 g~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~   82 (150)
                      |.-+.+.++|++|+..|.+||+++|+|+-.|-+.+.+ ..+|        .+..|+  .++..++.+||.+         
T Consensus        88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg--------~~~~AV--kDce~Al~iDp~y---------  148 (304)
T KOG0553|consen   88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG--------EYEDAV--KDCESALSIDPHY---------  148 (304)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc--------chHHHH--HHHHHHHhcChHH---------
Confidence            6778899999999999999999999999999999999 9999        677888  8999999999853         


Q ss_pred             HHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          83 VQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        83 ~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                                         +.+|..+|.+++.+|++++|++.|.++|+++|++...+.|+.++-.++
T Consensus       149 -------------------skay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l  196 (304)
T KOG0553|consen  149 -------------------SKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKL  196 (304)
T ss_pred             -------------------HHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHh
Confidence                               788999999999999999999999999999999999999998876543

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.64  E-value=3.1e-15  Score=102.44  Aligned_cols=134  Identities=19%  Similarity=0.140  Sum_probs=111.9

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .||.-|++.|++..|.+-+++||+.||++..+|..++.+ ...|        +.+.|.  ..+++++.++|+.-.++++.
T Consensus        40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~G--------e~~~A~--e~YrkAlsl~p~~GdVLNNY  109 (250)
T COG3063          40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLG--------ENDLAD--ESYRKALSLAPNNGDVLNNY  109 (250)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC--------ChhhHH--HHHHHHHhcCCCccchhhhh
Confidence            588999999999999999999999999999999999999 9999        556666  89999999999999877661


Q ss_pred             --------H---HHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          81 --------S---YVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        81 --------~---~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                              .   .+..+.....+|...   ..+.+|.++|.+.++.|+++.|.++|+++|+++|+++.....++..+++
T Consensus       110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~---~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~  185 (250)
T COG3063         110 GAFLCAQGRPEEAMQQFERALADPAYG---EPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYK  185 (250)
T ss_pred             hHHHHhCCChHHHHHHHHHHHhCCCCC---CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHh
Confidence                    1   222222222344332   3389999999999999999999999999999999999998888877765

>KOG4626|consensus

Probab=99.64  E-value=5.3e-15  Score=113.49  Aligned_cols=132  Identities=19%  Similarity=0.260  Sum_probs=106.6

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCC-
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD-   79 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~-   79 (150)
                      +||..+...|+...|+.+|++|+++||++.+++..||.+ ..++        .+.+|+  .-+.+++.+.|++...+.+ 
T Consensus       223 nLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~--------~~d~Av--s~Y~rAl~lrpn~A~a~gNl  292 (966)
T KOG4626|consen  223 NLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEAR--------IFDRAV--SCYLRALNLRPNHAVAHGNL  292 (966)
T ss_pred             hcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHh--------cchHHH--HHHHHHHhcCCcchhhccce
Confidence            578888889999999999999999999999999999999 8888        566777  7788888888888765332 


Q ss_pred             -------hHHHHHH----HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          80 -------PSYVQMI----KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        80 -------~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                             +...-+|    +.++.+|..      +.++.++++++-.+|+..+|+.+|++||.+.|+++.+.+|+|.+|.+
T Consensus       293 a~iYyeqG~ldlAI~~Ykral~~~P~F------~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E  366 (966)
T KOG4626|consen  293 ACIYYEQGLLDLAIDTYKRALELQPNF------PDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYRE  366 (966)
T ss_pred             EEEEeccccHHHHHHHHHHHHhcCCCc------hHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence                   2222222    336667766      88899999999888999999999999999999999999999988877


Q ss_pred             c
Q psy3020         149 A  149 (150)
Q Consensus       149 ~  149 (150)
                      +
T Consensus       367 ~  367 (966)
T KOG4626|consen  367 Q  367 (966)
T ss_pred             h
Confidence            5

>KOG4626|consensus

Probab=99.63  E-value=2.2e-15  Score=115.52  Aligned_cols=129  Identities=18%  Similarity=0.232  Sum_probs=109.3

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCC-
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD-   79 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~-   79 (150)
                      +||.+|.+.|++++|...|.+||++.|..+.++..|+.+ ...|        .+.+|+  ..+.+++++.|.....+++ 
T Consensus       359 NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqg--------nl~~Ai--~~YkealrI~P~fAda~~Nm  428 (966)
T KOG4626|consen  359 NLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQG--------NLDDAI--MCYKEALRIKPTFADALSNM  428 (966)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcc--------cHHHHH--HHHHHHHhcCchHHHHHHhc
Confidence            689999999999999999999999999999999999999 8888        777888  8888999999987765433 


Q ss_pred             h-------HHHHHH----HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHH
Q psy3020          80 P-------SYVQMI----KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF  146 (150)
Q Consensus        80 ~-------~~~~~~----~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~  146 (150)
                      +       ++..++    +.+...|..      ++++.++|.++...|+.++||..|+.||.++|+.+.++.|++.|+
T Consensus       429 Gnt~ke~g~v~~A~q~y~rAI~~nPt~------AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~l  500 (966)
T KOG4626|consen  429 GNTYKEMGDVSAAIQCYTRAIQINPTF------AEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL  500 (966)
T ss_pred             chHHHHhhhHHHHHHHHHHHHhcCcHH------HHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence            1       122222    235556655      999999999999999999999999999999999999999999886

>KOG0548|consensus

Probab=99.59  E-value=3.7e-14  Score=106.80  Aligned_cols=88  Identities=36%  Similarity=0.569  Sum_probs=66.1

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChH
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPS   81 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~   81 (150)
                      +|.+++.+|+|++|+..|.+.|+.||+|...+.+++.+ ....        .....+.++.+...+..+|.....+.++.
T Consensus        76 ~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~--------~~~~~~~~p~~~~~l~~~p~t~~~~~~~~  147 (539)
T KOG0548|consen   76 KGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDY--------AADQLFTKPYFHEKLANLPLTNYSLSDPA  147 (539)
T ss_pred             hHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHH--------HhhhhccCcHHHHHhhcChhhhhhhccHH
Confidence            68999999999999999999999999999999999887 3322        22344555777777777777666666666


Q ss_pred             HHHHHHHHhcCcchhhh
Q psy3020          82 YVQMIKEIQKDPSLMTL   98 (150)
Q Consensus        82 ~~~~~~~l~~~~~~~~~   98 (150)
                      |...+..+.+.|+.+..
T Consensus       148 ~~~~l~~~~~~p~~l~~  164 (539)
T KOG0548|consen  148 YVKILEIIQKNPTSLKL  164 (539)
T ss_pred             HHHHHHHhhcCcHhhhc
Confidence            66666666666655444

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.56  E-value=5.7e-14  Score=111.13  Aligned_cols=132  Identities=12%  Similarity=0.105  Sum_probs=106.8

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCC-
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD-   79 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~-   79 (150)
                      .+|.++...|++++|+.+|+++++++|++..++..++.+ ..+|        ++.+++  ..+.+++..+|++...+.. 
T Consensus       336 ~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g--------~~~eA~--~~~~~al~~~p~~~~~~~~l  405 (615)
T TIGR00990       336 LRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELG--------DPDKAE--EDFDKALKLNSEDPDIYYHR  405 (615)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCC--------CHHHHH--HHHHHHHHhCCCCHHHHHHH
Confidence            468899999999999999999999999999999999999 8888        667777  7888888888887653211 


Q ss_pred             -------hHHHHHH----HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          80 -------PSYVQMI----KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        80 -------~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                             ..+...+    ..+..+|..      ...+..+|.++++.|++++|+..|.+++..+|+++.+++++|.++..
T Consensus       406 g~~~~~~g~~~~A~~~~~kal~l~P~~------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~  479 (615)
T TIGR00990       406 AQLHFIKGEFAQAGKDYQKSIDLDPDF------IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLD  479 (615)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCccC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence                   1111221    224445544      77889999999999999999999999999999999999999999876


Q ss_pred             c
Q psy3020         149 A  149 (150)
Q Consensus       149 ~  149 (150)
                      +
T Consensus       480 ~  480 (615)
T TIGR00990       480 Q  480 (615)
T ss_pred             c
Confidence            5

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.56  E-value=8.6e-14  Score=103.52  Aligned_cols=108  Identities=16%  Similarity=0.204  Sum_probs=98.3

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChH
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPS   81 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~   81 (150)
                      .|...+..|+|++|++.|++||+++|+++.++..++.+ ..+|        .+.+|+  ..+.+++.++|++        
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g--------~~~eAl--~~~~~Al~l~P~~--------   69 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLG--------NFTEAV--ADANKAIELDPSL--------   69 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHhCcCC--------
Confidence            57889999999999999999999999999999999999 8888        778888  8888888888854        


Q ss_pred             HHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          82 YVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                                          +.++..+|.+++..|+|++|+..|+++++++|+++.+...++.|.-+
T Consensus        70 --------------------~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k  116 (356)
T PLN03088         70 --------------------AKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEK  116 (356)
T ss_pred             --------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence                                67899999999999999999999999999999999999999888543

>KOG1126|consensus

Probab=99.56  E-value=6e-15  Score=113.18  Aligned_cols=132  Identities=20%  Similarity=0.261  Sum_probs=106.6

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC----
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF----   76 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~----   76 (150)
                      .+|.||.-+++++.|+++|++|+++||+++++|.-+|-= ....        +++.|+  ..++.++..+|+++.+    
T Consensus       426 a~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~e--------e~d~a~--~~fr~Al~~~~rhYnAwYGl  495 (638)
T KOG1126|consen  426 ALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATE--------EFDKAM--KSFRKALGVDPRHYNAWYGL  495 (638)
T ss_pred             HhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhH--------HHHhHH--HHHHhhhcCCchhhHHHHhh
Confidence            479999999999999999999999999999999988765 5555        677888  8999999999998852    


Q ss_pred             ----CCChHHHHH----HHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          77 ----LSDPSYVQM----IKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        77 ----~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                          +.+..+..+    -..++.+|..      ...+-..|.++.+.|+.++|+..|++|+.+||.|+...+++|.+++.
T Consensus       496 G~vy~Kqek~e~Ae~~fqkA~~INP~n------svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~  569 (638)
T KOG1126|consen  496 GTVYLKQEKLEFAEFHFQKAVEINPSN------SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFS  569 (638)
T ss_pred             hhheeccchhhHHHHHHHhhhcCCccc------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Confidence                222222211    1225556655      77788889999999999999999999999999999999999988875


Q ss_pred             c
Q psy3020         149 A  149 (150)
Q Consensus       149 ~  149 (150)
                      +
T Consensus       570 ~  570 (638)
T KOG1126|consen  570 L  570 (638)
T ss_pred             h
Confidence            4

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.51  E-value=3.1e-13  Score=107.00  Aligned_cols=125  Identities=20%  Similarity=0.213  Sum_probs=100.5

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCC-
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD-   79 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~-   79 (150)
                      .+|.++...|++++|+..|+++++++|+++.++..+|.+ ..+|        ++.+|+  ..+.+++.++|++...+.. 
T Consensus       370 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g--------~~~~A~--~~~~kal~l~P~~~~~~~~l  439 (615)
T TIGR00990       370 KRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKG--------EFAQAG--KDYQKSIDLDPDFIFSHIQL  439 (615)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHcCccCHHHHHHH
Confidence            578999999999999999999999999999999999999 9999        777888  8899999999986543211 


Q ss_pred             -------hHHHHHHH----HHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcH
Q psy3020          80 -------PSYVQMIK----EIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNR  142 (150)
Q Consensus        80 -------~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~  142 (150)
                             +.+...+.    .+...|..      +..+..+|.++...|++++|++.|.++++++|++...+.+.
T Consensus       440 a~~~~~~g~~~eA~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~  507 (615)
T TIGR00990       440 GVTQYKEGSIASSMATFRRCKKNFPEA------PDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNV  507 (615)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccH
Confidence                   11111211    13344544      88999999999999999999999999999999876655544

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.50  E-value=5.2e-13  Score=97.10  Aligned_cols=97  Identities=14%  Similarity=0.132  Sum_probs=88.2

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.+|...|++++|+..|+++++++|+++.++..+|.+ ..+|        ++.+|+  ..+.+++.++|++       
T Consensus        69 ~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g--------~~~~A~--~~~~~Al~l~P~~-------  131 (296)
T PRK11189         69 ERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAG--------NFDAAY--EAFDSVLELDPTY-------  131 (296)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC--------CHHHHH--HHHHHHHHhCCCC-------
Confidence            468899999999999999999999999999999999999 9999        677888  7888888888864       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCc
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNH  136 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~  136 (150)
                                           ..+|.++|.+++..|++++|++.|+++++++|+++
T Consensus       132 ---------------------~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189        132 ---------------------NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             ---------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence                                 66789999999999999999999999999999987

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.47  E-value=1e-12  Score=90.32  Aligned_cols=36  Identities=17%  Similarity=0.301  Sum_probs=32.6

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcc
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHI  137 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~  137 (150)
                      +.++..+|..+++.|+|++|+.+|+++++++|.+..
T Consensus       144 ~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~  179 (198)
T PRK10370        144 VTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN  179 (198)
T ss_pred             hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            788999999999999999999999999999997654

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.46  E-value=2.7e-12  Score=82.68  Aligned_cols=100  Identities=18%  Similarity=0.189  Sum_probs=87.4

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.++...|++++|++.|++++.++|+++.++..++.+ ..+|        ++.++.  ..+..++..+|++       
T Consensus        22 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~--------~~~~A~--~~~~~~~~~~p~~-------   84 (135)
T TIGR02552        22 ALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLK--------EYEEAI--DAYALAAALDPDD-------   84 (135)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH--------HHHHHH--HHHHHHHhcCCCC-------
Confidence            578999999999999999999999999999999999999 8888        556666  5666666666643       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchh
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILF  139 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  139 (150)
                                           +..+..+|.++...|++++|+..|+++++++|++....
T Consensus        85 ---------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  122 (135)
T TIGR02552        85 ---------------------PRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS  122 (135)
T ss_pred             ---------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence                                 67789999999999999999999999999999988743

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.45  E-value=1.7e-12  Score=89.53  Aligned_cols=138  Identities=14%  Similarity=0.151  Sum_probs=100.4

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCC--
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS--   78 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~--   78 (150)
                      .+|.++...|++++|++.|+++++.+|++..++..++.+ ..+|        ++.++.  ..+.+.+...|++.....  
T Consensus        36 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~--------~~~~A~--~~~~~al~~~~~~~~~~~~~  105 (234)
T TIGR02521        36 QLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLG--------ELEKAE--DSFRRALTLNPNNGDVLNNY  105 (234)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHhhCCCCHHHHHHH
Confidence            578999999999999999999999999999999999999 8888        666777  777777877777543210  


Q ss_pred             ------ChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          79 ------DPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        79 ------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                            .+.+...+..+.........+.....+..+|.+++..|++++|+..|.+++..+|+++..+..+|.++..+
T Consensus       106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  182 (234)
T TIGR02521       106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLR  182 (234)
T ss_pred             HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc
Confidence                  01111111111110000000012567788899999999999999999999999999988888898888764

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.45  E-value=8.9e-13  Score=86.30  Aligned_cols=94  Identities=12%  Similarity=0.102  Sum_probs=81.1

Q ss_pred             HHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcc
Q psy3020          16 SISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPS   94 (150)
Q Consensus        16 A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~   94 (150)
                      -...|+++++++|++   +..+|.+ ...|        .+.++.  ..+..++..+|.+                     
T Consensus        12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g--------~~~~A~--~~~~~al~~~P~~---------------------   57 (144)
T PRK15359         12 PEDILKQLLSVDPET---VYASGYASWQEG--------DYSRAV--IDFSWLVMAQPWS---------------------   57 (144)
T ss_pred             HHHHHHHHHHcCHHH---HHHHHHHHHHcC--------CHHHHH--HHHHHHHHcCCCc---------------------
Confidence            347899999999997   4457777 8888        667777  7777777777754                     


Q ss_pred             hhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhcC
Q psy3020          95 LMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKAI  150 (150)
Q Consensus        95 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~~  150 (150)
                             +.+|..+|.++...|++++|+..|.++++++|+++..++++|.|+..++
T Consensus        58 -------~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g  106 (144)
T PRK15359         58 -------WRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG  106 (144)
T ss_pred             -------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence                   7889999999999999999999999999999999999999999998753

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.43  E-value=3.2e-12  Score=93.01  Aligned_cols=129  Identities=13%  Similarity=0.029  Sum_probs=92.6

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC----
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF----   76 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~----   76 (150)
                      .+|.++...|++++|+..|+++++++|++..++..+|.+ ...|        .+.+|+  ..+.+.+..+|++...    
T Consensus       103 ~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g--------~~~eA~--~~~~~al~~~P~~~~~~~~~  172 (296)
T PRK11189        103 YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGG--------RYELAQ--DDLLAFYQDDPNDPYRALWL  172 (296)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--------CHHHHH--HHHHHHHHhCCCCHHHHHHH
Confidence            579999999999999999999999999999999999999 8888        566777  7777777778876410    


Q ss_pred             -----CCC-hHHHHHH-HHHhc-Ccchhh------------------h------------HHHhHHHHHHHHHHHHhcCH
Q psy3020          77 -----LSD-PSYVQMI-KEIQK-DPSLMT------------------L------------EAKISLLKDKGNAALQANNF  118 (150)
Q Consensus        77 -----~~~-~~~~~~~-~~l~~-~~~~~~------------------~------------~~~~~~~~~~g~~~~~~~~~  118 (150)
                           ..+ ......+ ..+.. ++....                  .            +....+|..+|.++.+.|++
T Consensus       173 ~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~  252 (296)
T PRK11189        173 YLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDL  252 (296)
T ss_pred             HHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCH
Confidence                 011 0111111 00111 111000                  0            11257899999999999999


Q ss_pred             HHHHHHHHHHHhhcC-CCcchhh
Q psy3020         119 KEAIEAYSEAIKLDG-TNHILFS  140 (150)
Q Consensus       119 ~~A~~~~~~al~~~p-~~~~~~~  140 (150)
                      ++|+.+|+++++++| +.....+
T Consensus       253 ~~A~~~~~~Al~~~~~~~~e~~~  275 (296)
T PRK11189        253 DEAAALFKLALANNVYNFVEHRY  275 (296)
T ss_pred             HHHHHHHHHHHHhCCchHHHHHH
Confidence            999999999999997 5444444

>PRK12370 invasion protein regulator; Provisional

Probab=99.43  E-value=2.8e-12  Score=100.47  Aligned_cols=123  Identities=14%  Similarity=0.014  Sum_probs=91.3

Q ss_pred             CCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCC--------hH
Q psy3020          11 GRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD--------PS   81 (150)
Q Consensus        11 ~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~--------~~   81 (150)
                      +++++|+..+++|++++|+++.++..+|.+ ...|        ++.+|.  ..+.+++.++|++...+..        +.
T Consensus       318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g--------~~~~A~--~~~~~Al~l~P~~~~a~~~lg~~l~~~G~  387 (553)
T PRK12370        318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS--------EYIVGS--LLFKQANLLSPISADIKYYYGWNLFMAGQ  387 (553)
T ss_pred             hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc--------CHHHHH--HHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence            348899999999999999999999999998 8888        667777  8888889999987653210        11


Q ss_pred             HHHHH----HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc-CCCcchhhcHHHHHHhc
Q psy3020          82 YVQMI----KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLD-GTNHILFSNRSAAFAKA  149 (150)
Q Consensus        82 ~~~~~----~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~n~a~~~~~~  149 (150)
                      +.+.+    ..+..+|..      +..+..++.+++..|++++|+..+.+++..+ |+++.++.++|.+|..+
T Consensus       388 ~~eAi~~~~~Al~l~P~~------~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~  454 (553)
T PRK12370        388 LEEALQTINECLKLDPTR------AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLK  454 (553)
T ss_pred             HHHHHHHHHHHHhcCCCC------hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhC
Confidence            11111    123344544      4455566777788899999999999998875 78888889999888764

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.41  E-value=3.9e-12  Score=87.45  Aligned_cols=102  Identities=13%  Similarity=0.125  Sum_probs=90.4

Q ss_pred             hCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHH
Q psy3020          10 LGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKE   88 (150)
Q Consensus        10 ~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   88 (150)
                      .++.++++..++++|+.+|+|+++|..+|.+ ..+|        ++..|+  ..+.+++.++|++               
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g--------~~~~A~--~a~~~Al~l~P~~---------------  106 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRN--------DYDNAL--LAYRQALQLRGEN---------------  106 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--------CHHHHH--HHHHHHHHhCCCC---------------
Confidence            5667899999999999999999999999999 8999        677888  7888888888864               


Q ss_pred             HhcCcchhhhHHHhHHHHHHHHHH-HHhcC--HHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          89 IQKDPSLMTLEAKISLLKDKGNAA-LQANN--FKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        89 l~~~~~~~~~~~~~~~~~~~g~~~-~~~~~--~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                                   +..+..+|.++ +..|+  +++|.+.++++++++|+++.+++++|.+++++
T Consensus       107 -------------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~  157 (198)
T PRK10370        107 -------------AELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQ  157 (198)
T ss_pred             -------------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHc
Confidence                         67788889875 57777  59999999999999999999999999999875

>PRK12370 invasion protein regulator; Provisional

Probab=99.41  E-value=4.5e-12  Score=99.34  Aligned_cols=132  Identities=14%  Similarity=-0.027  Sum_probs=105.9

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCC--
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS--   78 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~--   78 (150)
                      .+|.++...|++++|+..|++|++++|+++.++..+|.+ ...|        ++.+|+  ..+.+++.++|.+..+..  
T Consensus       343 ~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G--------~~~eAi--~~~~~Al~l~P~~~~~~~~~  412 (553)
T PRK12370        343 LLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAG--------QLEEAL--QTINECLKLDPTRAAAGITK  412 (553)
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--------CHHHHH--HHHHHHHhcCCCChhhHHHH
Confidence            478899999999999999999999999999999999999 8889        677888  889999999998764310  


Q ss_pred             ------ChHHHHHH---HH-Hhc-CcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHH
Q psy3020          79 ------DPSYVQMI---KE-IQK-DPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFA  147 (150)
Q Consensus        79 ------~~~~~~~~---~~-l~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~  147 (150)
                            ...+..++   +. +.. .|..      +..+..+|.++...|++++|...+.+.+...|++..++..++..|+
T Consensus       413 ~~~~~~~g~~eeA~~~~~~~l~~~~p~~------~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~  486 (553)
T PRK12370        413 LWITYYHTGIDDAIRLGDELRSQHLQDN------PILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC  486 (553)
T ss_pred             HHHHHhccCHHHHHHHHHHHHHhccccC------HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence                  01111111   11 111 1323      6778999999999999999999999999999999999999988887


Q ss_pred             hc
Q psy3020         148 KA  149 (150)
Q Consensus       148 ~~  149 (150)
                      .+
T Consensus       487 ~~  488 (553)
T PRK12370        487 QN  488 (553)
T ss_pred             cc
Confidence            54

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.41  E-value=4.5e-12  Score=100.96  Aligned_cols=110  Identities=6%  Similarity=-0.018  Sum_probs=95.8

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      +||.+..+.|++++|...++.++++.|++..++..++.+ ...+        .+++|+  ..+.+.+..+|++       
T Consensus        91 ~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~--------~~eeA~--~~~~~~l~~~p~~-------  153 (694)
T PRK15179         91 LVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQ--------GIEAGR--AEIELYFSGGSSS-------  153 (694)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc--------cHHHHH--HHHHHHhhcCCCC-------
Confidence            589999999999999999999999999999999999999 9988        778888  8888888888865       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                                           +..+..+|.++.+.|+|++|+++|++++.-+|+++.++.++|.++.+.
T Consensus       154 ---------------------~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~  201 (694)
T PRK15179        154 ---------------------AREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRR  201 (694)
T ss_pred             ---------------------HHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence                                 667778888888888888888888888888888888888888887754

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.40  E-value=5.8e-12  Score=103.67  Aligned_cols=130  Identities=8%  Similarity=0.005  Sum_probs=69.5

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC----
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL----   77 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~----   77 (150)
                      +|.++...|++++|+..|+++++++|++...+..++.. ..+|        .+.+|.  ..+.+++..+|+ ...+    
T Consensus       548 la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~G--------r~~eAl--~~~~~AL~l~P~-~~a~~~LA  616 (987)
T PRK09782        548 AANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPG--------QPELAL--NDLTRSLNIAPS-ANAYVARA  616 (987)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCC--------CHHHHH--HHHHHHHHhCCC-HHHHHHHH
Confidence            45555666666666666666666666655554444444 4445        444555  555555555553 2110    


Q ss_pred             ------CCh-HHHHHH-HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          78 ------SDP-SYVQMI-KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        78 ------~~~-~~~~~~-~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                            .+. .....+ ..+..+|+.      +..+.++|.++...|++++|+..|.++++++|+++.+++++|.++..+
T Consensus       617 ~~l~~lG~~deA~~~l~~AL~l~Pd~------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~l  690 (987)
T PRK09782        617 TIYRQRHNVPAAVSDLRAALELEPNN------SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRL  690 (987)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence                  000 000111 113334433      566666666666666666666666666666666666666666666543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.35  E-value=1.4e-11  Score=103.60  Aligned_cols=131  Identities=12%  Similarity=0.078  Sum_probs=100.4

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC----
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL----   77 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~----   77 (150)
                      +|.++...|++++|++.|+++++++|+++.++..++.+ ...|        ++.+|.  ..+.+.+..+|++....    
T Consensus       467 ~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G--------~~~~A~--~~l~~al~~~P~~~~~~~a~a  536 (1157)
T PRK11447        467 QAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAG--------QRSQAD--ALMRRLAQQKPNDPEQVYAYG  536 (1157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHcCCCCHHHHHHHH
Confidence            57788899999999999999999999999999999999 8999        566776  67777777777665421    


Q ss_pred             ------CC-hHHHH-----------------------------------------HHHHHhcCcchhhhHHHhHHHHHHH
Q psy3020          78 ------SD-PSYVQ-----------------------------------------MIKEIQKDPSLMTLEAKISLLKDKG  109 (150)
Q Consensus        78 ------~~-~~~~~-----------------------------------------~~~~l~~~~~~~~~~~~~~~~~~~g  109 (150)
                            .+ .....                                         ++..+...|..      +..+..+|
T Consensus       537 l~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~------~~~~~~La  610 (1157)
T PRK11447        537 LYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPS------TRIDLTLA  610 (1157)
T ss_pred             HHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCC------chHHHHHH
Confidence                  00 00000                                         11111222222      56778899


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         110 NAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       110 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      .++.+.|++++|++.|+++++++|+++.+++++|.+|..+
T Consensus       611 ~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~  650 (1157)
T PRK11447        611 DWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQ  650 (1157)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            9999999999999999999999999999999999998764

>PLN02789 farnesyltranstransferase

Probab=99.35  E-value=2.4e-11  Score=89.06  Aligned_cols=129  Identities=9%  Similarity=0.081  Sum_probs=101.9

Q ss_pred             HHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCC-Ch--
Q psy3020           5 SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS-DP--   80 (150)
Q Consensus         5 ~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~-~~--   80 (150)
                      .++...+++++|+..+.++|+++|++..+|..++.+ ..+|.       .+.+++  ..+.+.+..+|++..... +.  
T Consensus        45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~-------~l~eeL--~~~~~~i~~npknyqaW~~R~~~  115 (320)
T PLN02789         45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDA-------DLEEEL--DFAEDVAEDNPKNYQIWHHRRWL  115 (320)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcch-------hHHHHH--HHHHHHHHHCCcchHHhHHHHHH
Confidence            456778899999999999999999999999999998 77762       356667  677778888888765311 00  


Q ss_pred             ----------HHHHHH-HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          81 ----------SYVQMI-KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        81 ----------~~~~~~-~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                                .-.... ..++.+|..      ..+|..+|.++...|+|++++++++++|++||.|..+|++|+.++..
T Consensus       116 l~~l~~~~~~~el~~~~kal~~dpkN------y~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~  188 (320)
T PLN02789        116 AEKLGPDAANKELEFTRKILSLDAKN------YHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITR  188 (320)
T ss_pred             HHHcCchhhHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHh
Confidence                      011111 224445544      89999999999999999999999999999999999999999988754

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.35  E-value=3.5e-12  Score=91.91  Aligned_cols=48  Identities=25%  Similarity=0.327  Sum_probs=41.2

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      +..|..+|.++...|++++|+.+|++++..+|+|+..+.+.|.++.+.
T Consensus       214 ~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~  261 (280)
T PF13429_consen  214 PDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQA  261 (280)
T ss_dssp             CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHhccccccccccccccccccccccccccccccccccccc
Confidence            566788999999999999999999999999999999999999998764

>KOG0548|consensus

Probab=99.35  E-value=1.1e-11  Score=93.64  Aligned_cols=107  Identities=22%  Similarity=0.330  Sum_probs=95.6

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChH
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPS   81 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~   81 (150)
                      -|.+++..|+|..|+.+|.+||+.+|+++..+-+++.| -.++        .+..++  .++..++.++|+.        
T Consensus       364 kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~--------~~~~aL--~Da~~~ieL~p~~--------  425 (539)
T KOG0548|consen  364 KGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLG--------EYPEAL--KDAKKCIELDPNF--------  425 (539)
T ss_pred             HHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh--------hHHHHH--HHHHHHHhcCchH--------
Confidence            48899999999999999999999999999999999999 8999        677888  8888888888843        


Q ss_pred             HHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHH
Q psy3020          82 YVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFA  147 (150)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~  147 (150)
                                          ..+|...|.+++...+|+.|+++|.+++++||++..+.-....|+.
T Consensus       426 --------------------~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~  471 (539)
T KOG0548|consen  426 --------------------IKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVE  471 (539)
T ss_pred             --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence                                7788999999999999999999999999999999877666666654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.35  E-value=1.5e-11  Score=101.28  Aligned_cols=127  Identities=9%  Similarity=0.129  Sum_probs=99.4

Q ss_pred             HHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCC----
Q psy3020           5 SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD----   79 (150)
Q Consensus         5 ~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~----   79 (150)
                      ..+...|++++|+..|+++++++|+ +.++..++.+ ..+|        .+.+|+  ..+.+++.++|++..++..    
T Consensus       584 ~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG--------~~deA~--~~l~~AL~l~Pd~~~a~~nLG~a  652 (987)
T PRK09782        584 AQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRH--------NVPAAV--SDLRAALELEPNNSNYQAALGYA  652 (987)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCC--------CHHHHH--HHHHHHHHhCCCCHHHHHHHHHH
Confidence            3444559999999999999999996 8889999988 8888        667777  8888889999988754211    


Q ss_pred             ----hHHHHH---H-HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          80 ----PSYVQM---I-KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        80 ----~~~~~~---~-~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                          ..+...   + ..+...|..      +.++.++|.++...|++++|+.+|+++++++|+++....-.|.+...
T Consensus       653 L~~~G~~eeAi~~l~~AL~l~P~~------~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~  723 (987)
T PRK09782        653 LWDSGDIAQSREMLERAHKGLPDD------PALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQ  723 (987)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHH
Confidence                111121   1 224456655      89999999999999999999999999999999998888777766543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.34  E-value=2.1e-11  Score=102.55  Aligned_cols=129  Identities=16%  Similarity=0.176  Sum_probs=103.6

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC----
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL----   77 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~----   77 (150)
                      .|.++...|++++|+..|+++++++|++++++..++.+ ...|        ++.+|+  ..+.+++..+|+.....    
T Consensus       275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g--------~~~eA~--~~l~~Al~~~p~~~~~~~~~~  344 (1157)
T PRK11447        275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQG--------DRARAV--AQFEKALALDPHSSNRDKWES  344 (1157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHhCCCccchhHHHH
Confidence            48889999999999999999999999999999999999 8889        677888  88888888888765310    


Q ss_pred             ------------------CChHHHHHH----HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCC
Q psy3020          78 ------------------SDPSYVQMI----KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTN  135 (150)
Q Consensus        78 ------------------~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~  135 (150)
                                        ....+..++    +.+..+|..      +.++..+|.++...|++++|+++|+++++++|++
T Consensus       345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~  418 (1157)
T PRK11447        345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTD------SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN  418 (1157)
T ss_pred             HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence                              000011111    113334444      7888999999999999999999999999999999


Q ss_pred             cchhhcHHHHHH
Q psy3020         136 HILFSNRSAAFA  147 (150)
Q Consensus       136 ~~~~~n~a~~~~  147 (150)
                      +.++.+++.+|.
T Consensus       419 ~~a~~~L~~l~~  430 (1157)
T PRK11447        419 TNAVRGLANLYR  430 (1157)
T ss_pred             HHHHHHHHHHHH
Confidence            999988888774

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.34  E-value=2.5e-11  Score=96.88  Aligned_cols=135  Identities=15%  Similarity=0.179  Sum_probs=99.9

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCC---
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS---   78 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~---   78 (150)
                      +|.++...|++++|+..|+++++++|+++.++..+|.+ ...|+.+    ....+|.  ..+.+++..+|++.....   
T Consensus       218 l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~----eA~~~A~--~~~~~Al~l~P~~~~a~~~lg  291 (656)
T PRK15174        218 AVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSR----EAKLQAA--EHWRHALQFNSDNVRIVTLYA  291 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCch----hhHHHHH--HHHHHHHhhCCCCHHHHHHHH
Confidence            46788899999999999999999999999999999999 8888432    0112356  778888888998664211   


Q ss_pred             -----ChHHHHHH----HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          79 -----DPSYVQMI----KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        79 -----~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                           ...+...+    ..+..+|..      +..+..+|.++...|++++|+..|.++++.+|+++..+..+|.++..+
T Consensus       292 ~~l~~~g~~~eA~~~l~~al~l~P~~------~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~  365 (656)
T PRK15174        292 DALIRTGQNEKAIPLLQQSLATHPDL------PYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQA  365 (656)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHC
Confidence                 11111111    113345544      778888999999999999999999999999998887777778777654

>KOG0624|consensus

Probab=99.33  E-value=3.5e-12  Score=92.42  Aligned_cols=132  Identities=19%  Similarity=0.253  Sum_probs=108.2

Q ss_pred             hHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHH
Q psy3020           4 YSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSY   82 (150)
Q Consensus         4 g~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~   82 (150)
                      +.||...|.+..||.+...|-++..||.+.++.++.+ +..|        +.+.++  ..++++++++|+++.++   .+
T Consensus       196 akc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vg--------d~~~sL--~~iRECLKldpdHK~Cf---~~  262 (504)
T KOG0624|consen  196 AKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVG--------DAENSL--KEIRECLKLDPDHKLCF---PF  262 (504)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhh--------hHHHHH--HHHHHHHccCcchhhHH---HH
Confidence            6799999999999999999999999999999999999 9999        778888  99999999999999987   67


Q ss_pred             HHHHHHHhcCcchhhhHHH-------------------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcc
Q psy3020          83 VQMIKEIQKDPSLMTLEAK-------------------------ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHI  137 (150)
Q Consensus        83 ~~~~~~l~~~~~~~~~~~~-------------------------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~  137 (150)
                      ++.++.+.+...++....+                         ...+..+..++..-+++.+||+.++++|+++|++..
T Consensus       263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~  342 (504)
T KOG0624|consen  263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQ  342 (504)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHH
Confidence            7777776666555544111                         112222333445678999999999999999999999


Q ss_pred             hhhcHHHHHHh
Q psy3020         138 LFSNRSAAFAK  148 (150)
Q Consensus       138 ~~~n~a~~~~~  148 (150)
                      .+..||.+|+.
T Consensus       343 ~l~dRAeA~l~  353 (504)
T KOG0624|consen  343 VLCDRAEAYLG  353 (504)
T ss_pred             HHHHHHHHHhh
Confidence            99999998863

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.33  E-value=3.4e-11  Score=78.88  Aligned_cols=95  Identities=11%  Similarity=0.016  Sum_probs=86.4

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|..+...|++++|...|+.+..+||.++..|++||.+ ..+|        .+.+|+  .-+..++.++|++       
T Consensus        40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g--------~~~~AI--~aY~~A~~L~~dd-------  102 (157)
T PRK15363         40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQK--------HWGEAI--YAYGRAAQIKIDA-------  102 (157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh--------hHHHHH--HHHHHHHhcCCCC-------
Confidence            468889999999999999999999999999999999999 9999        778888  7888888888865       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT  134 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  134 (150)
                                           +.++.+.|.+++..|+.+.|.++|+.++.+--.
T Consensus       103 ---------------------p~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~  135 (157)
T PRK15363        103 ---------------------PQAPWAAAECYLACDNVCYAIKALKAVVRICGE  135 (157)
T ss_pred             ---------------------chHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence                                 678899999999999999999999999998733

>KOG1155|consensus

Probab=99.32  E-value=2e-11  Score=91.20  Aligned_cols=131  Identities=15%  Similarity=0.170  Sum_probs=101.4

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC-CCCh
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF-LSDP   80 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~-~~~~   80 (150)
                      +|+.|.-.++.++|+..|++||++||....+|.-+|-= ..|.        -...|+  ..+++++.++|.+... +.=+
T Consensus       336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmK--------Nt~AAi--~sYRrAvdi~p~DyRAWYGLG  405 (559)
T KOG1155|consen  336 IANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMK--------NTHAAI--ESYRRAVDINPRDYRAWYGLG  405 (559)
T ss_pred             ehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhc--------ccHHHH--HHHHHHHhcCchhHHHHhhhh
Confidence            57788888999999999999999999999999888876 6666        445677  8899999999987652 2111


Q ss_pred             HHHHH-----------HHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          81 SYVQM-----------IKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        81 ~~~~~-----------~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      +.+..           -+...-.|.+      ...|..+|.++.+.++.++|++||.+++.....+-.++..+|.+|-++
T Consensus       406 QaYeim~Mh~YaLyYfqkA~~~kPnD------sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l  479 (559)
T KOG1155|consen  406 QAYEIMKMHFYALYYFQKALELKPND------SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEEL  479 (559)
T ss_pred             HHHHHhcchHHHHHHHHHHHhcCCCc------hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            11111           0112233433      889999999999999999999999999999999999999999988654

>KOG1125|consensus

Probab=99.32  E-value=1.4e-11  Score=93.82  Aligned_cols=48  Identities=23%  Similarity=0.203  Sum_probs=35.9

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      ...|..+|-.+.-..+.++||..|++|+++.|+...++||+|++++.+
T Consensus       464 ~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl  511 (579)
T KOG1125|consen  464 YLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNL  511 (579)
T ss_pred             HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh
Confidence            666777777777777777777777777777777777777777777654

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.31  E-value=3.4e-11  Score=77.52  Aligned_cols=94  Identities=17%  Similarity=0.175  Sum_probs=80.8

Q ss_pred             HHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchh
Q psy3020          18 STYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLM   96 (150)
Q Consensus        18 ~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   96 (150)
                      +.|++++.++|++..+...++.+ ...|        ++.++.  ..+...+..+|++                       
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~--------~~~~A~--~~~~~~~~~~p~~-----------------------   50 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQG--------RYDEAL--KLFQLLAAYDPYN-----------------------   50 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcc--------cHHHHH--HHHHHHHHhCCCc-----------------------
Confidence            57899999999999999999998 8888        556666  5555555555542                       


Q ss_pred             hhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          97 TLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        97 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                           +..|..+|.+++..|++++|+.+|.+++.++|+++..++++|.+|..+
T Consensus        51 -----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~   98 (135)
T TIGR02552        51 -----SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL   98 (135)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence                 778999999999999999999999999999999999999999999865

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.31  E-value=4.4e-11  Score=84.00  Aligned_cols=134  Identities=12%  Similarity=0.038  Sum_probs=77.2

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHH---HHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCC
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQ---MKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS   78 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~---a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~   78 (150)
                      +|.+|...|++++|+..|+++++.+|+++.   ++..++.+ .............+..+.  ..+.+.+..+|++.... 
T Consensus        76 la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~--~~~~~~~~~~p~~~~~~-  152 (235)
T TIGR03302        76 LAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAF--EAFQELIRRYPNSEYAP-  152 (235)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHH--HHHHHHHHHCCCChhHH-
Confidence            556666666666666666666666665554   34455554 332000000000344455  55555566666543321 


Q ss_pred             ChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCc---chhhcHHHHHHhc
Q psy3020          79 DPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNH---ILFSNRSAAFAKA  149 (150)
Q Consensus        79 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~n~a~~~~~~  149 (150)
                        .....+..+...        .......+|..++..|++.+|+..|++++...|+++   .+++++|.++..+
T Consensus       153 --~a~~~~~~~~~~--------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~l  216 (235)
T TIGR03302       153 --DAKKRMDYLRNR--------LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKL  216 (235)
T ss_pred             --HHHHHHHHHHHH--------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHc
Confidence              111111111000        023345788889999999999999999999988764   7899999999865

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.30  E-value=7.9e-11  Score=95.27  Aligned_cols=132  Identities=16%  Similarity=0.251  Sum_probs=100.6

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCC--
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS--   78 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~--   78 (150)
                      .+|.++...|++++|++.++++++.+|+++.++..++.+ ..+|        +..+|+  ..+.+.+...|++.....  
T Consensus       741 ~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g--------~~~~A~--~~~~~~~~~~p~~~~~~~~l  810 (899)
T TIGR02917       741 KLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQK--------DYDKAI--KHYRTVVKKAPDNAVVLNNL  810 (899)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc--------CHHHHH--HHHHHHHHhCCCCHHHHHHH
Confidence            467788888888888888888888888888888888888 7788        556677  777777777887654211  


Q ss_pred             --------ChHHHHHHH-HHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          79 --------DPSYVQMIK-EIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        79 --------~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                              ++.....+. .+...|+.      +..+..+|.+++..|++++|+++|+++++.+|.++..+++++.++.+.
T Consensus       811 ~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~  884 (899)
T TIGR02917       811 AWLYLELKDPRALEYAEKALKLAPNI------PAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLAT  884 (899)
T ss_pred             HHHHHhcCcHHHHHHHHHHHhhCCCC------cHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Confidence                    111111111 12333433      778889999999999999999999999999999999999999999865

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.29  E-value=8.8e-11  Score=73.59  Aligned_cols=103  Identities=14%  Similarity=0.123  Sum_probs=86.8

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCc---HHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNN---EQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~---~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~   77 (150)
                      .+|..+...|++++|++.|+++++.+|++   ..++..++.+ ...|        ++..|+  ..+...+...|+.... 
T Consensus         7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~--~~~~~~~~~~p~~~~~-   75 (119)
T TIGR02795         7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG--------KYADAA--KAFLAVVKKYPKSPKA-   75 (119)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc--------cHHHHH--HHHHHHHHHCCCCCcc-
Confidence            57899999999999999999999999987   5688889999 8888        667777  6666666667754321 


Q ss_pred             CChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchh
Q psy3020          78 SDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILF  139 (150)
Q Consensus        78 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  139 (150)
                                              +.++..+|.++...|++++|++.|.++++..|+++...
T Consensus        76 ------------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  113 (119)
T TIGR02795        76 ------------------------PDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAK  113 (119)
T ss_pred             ------------------------cHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence                                    56789999999999999999999999999999987643

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.29  E-value=5.8e-11  Score=94.78  Aligned_cols=124  Identities=15%  Similarity=0.115  Sum_probs=96.0

Q ss_pred             hhhHHHHhhCCHHH----HHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC
Q psy3020           2 TTYSCLSYLGRYKE----SISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF   76 (150)
Q Consensus         2 ~lg~~~~~~~~~~~----A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~   76 (150)
                      .+|.++...|++++    |+..|+++++++|+++.++..++.+ ...|        .+.+|+  ..+.+++.++|++...
T Consensus       251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g--------~~~eA~--~~l~~al~l~P~~~~a  320 (656)
T PRK15174        251 SLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTG--------QNEKAI--PLLQQSLATHPDLPYV  320 (656)
T ss_pred             HHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC--------CHHHHH--HHHHHHHHhCCCCHHH
Confidence            57999999999996    8999999999999999999999999 8889        667777  7888888999987653


Q ss_pred             CC--------ChHHHHHHHH----HhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhc
Q psy3020          77 LS--------DPSYVQMIKE----IQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSN  141 (150)
Q Consensus        77 ~~--------~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n  141 (150)
                      ..        ...+...+..    +...|..      +..+..+|.++...|++++|+..|.++++++|++....+.
T Consensus       321 ~~~La~~l~~~G~~~eA~~~l~~al~~~P~~------~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~  391 (656)
T PRK15174        321 RAMYARALRQVGQYTAASDEFVQLAREKGVT------SKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFE  391 (656)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHH
Confidence            21        0111122211    2234433      5556667899999999999999999999999998755444

>KOG1126|consensus

Probab=99.28  E-value=1.6e-11  Score=94.73  Aligned_cols=132  Identities=12%  Similarity=0.150  Sum_probs=106.6

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCC-
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD-   79 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~-   79 (150)
                      .+|.-+.....++.|..+|++||.+||.+..||+++|.+ ..++        +++.|.  -.+.+++.++|.....+-- 
T Consensus       460 LlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqe--------k~e~Ae--~~fqkA~~INP~nsvi~~~~  529 (638)
T KOG1126|consen  460 LLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQE--------KLEFAE--FHFQKAVEINPSNSVILCHI  529 (638)
T ss_pred             hcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccc--------hhhHHH--HHHHhhhcCCccchhHHhhh
Confidence            467778888999999999999999999999999999999 8888        667777  7899999999987753210 


Q ss_pred             -------hHHHHHHH----HHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          80 -------PSYVQMIK----EIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        80 -------~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                             +...+.+.    .+--+|..      +-.-+.+|.+++-.+++++|+..+++.-++-|++...++.+|.+|.+
T Consensus       530 g~~~~~~k~~d~AL~~~~~A~~ld~kn------~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~  603 (638)
T KOG1126|consen  530 GRIQHQLKRKDKALQLYEKAIHLDPKN------PLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKR  603 (638)
T ss_pred             hHHHHHhhhhhHHHHHHHHHHhcCCCC------chhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence                   01111111    12223333      77889999999999999999999999999999999999999999987


Q ss_pred             c
Q psy3020         149 A  149 (150)
Q Consensus       149 ~  149 (150)
                      +
T Consensus       604 ~  604 (638)
T KOG1126|consen  604 L  604 (638)
T ss_pred             H
Confidence            5

>KOG1155|consensus

Probab=99.28  E-value=7.5e-11  Score=88.18  Aligned_cols=121  Identities=10%  Similarity=0.145  Sum_probs=83.7

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCC-
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD-   79 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~-   79 (150)
                      .+|.-|.++++-..|++.|++|++++|.+..+|.+||+. .-|+..      .+  ++  =-+.++....|.+...... 
T Consensus       369 LmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh------~Y--aL--yYfqkA~~~kPnDsRlw~aL  438 (559)
T KOG1155|consen  369 LMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMH------FY--AL--YYFQKALELKPNDSRLWVAL  438 (559)
T ss_pred             HhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcch------HH--HH--HHHHHHHhcCCCchHHHHHH
Confidence            579999999999999999999999999999999999999 777742      11  22  3566777778877642100 


Q ss_pred             hHHHHHHHHHhcCcchhhh-----HHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q psy3020          80 PSYVQMIKEIQKDPSLMTL-----EAKISLLKDKGNAALQANNFKEAIEAYSEAIKLD  132 (150)
Q Consensus        80 ~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~  132 (150)
                      +.-+..+..++........     +.+..++..+|+.+-+.+++++|..+|.+.++.-
T Consensus       439 G~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~  496 (559)
T KOG1155|consen  439 GECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS  496 (559)
T ss_pred             HHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            0001111111000000000     1225789999999999999999999999999854

>KOG0550|consensus

Probab=99.25  E-value=1.9e-11  Score=90.12  Aligned_cols=121  Identities=28%  Similarity=0.425  Sum_probs=100.0

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChH
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPS   81 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~   81 (150)
                      -+.|+.-.+++++|.+.--..+++|+.|.++..-.+.+ +...        ....+.  ..+.+.++++|++...-.   
T Consensus       175 ka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~--------~~~ka~--~hf~qal~ldpdh~~sk~---  241 (486)
T KOG0550|consen  175 KAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYND--------NADKAI--NHFQQALRLDPDHQKSKS---  241 (486)
T ss_pred             hhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccccccccc--------chHHHH--HHHhhhhccChhhhhHHh---
Confidence            36789999999999999999999999999999999998 7766        556666  889999999998765321   


Q ss_pred             HHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCC----cchhhcHHHHHHhc
Q psy3020          82 YVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTN----HILFSNRSAAFAKA  149 (150)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~n~a~~~~~~  149 (150)
                             ....+      .+...|...|+..++.|+|.+|.++|+++|.++|++    +.+|.|||.+.+.+
T Consensus       242 -------~~~~~------k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rL  300 (486)
T KOG0550|consen  242 -------ASMMP------KKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRL  300 (486)
T ss_pred             -------HhhhH------HHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhccc
Confidence                   11111      337889999999999999999999999999999986    57789999888765

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.24  E-value=1.4e-10  Score=93.82  Aligned_cols=132  Identities=18%  Similarity=0.152  Sum_probs=93.4

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC---
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL---   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~---   77 (150)
                      .+|.++...|++++|+..|+++++.+|+++.++..++.+ ...|        ++.++.  ..+...+..+|.+....   
T Consensus       130 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~--------~~~~A~--~~~~~~~~~~~~~~~~~~~~  199 (899)
T TIGR02917       130 LRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAEN--------RFDEAR--ALIDEVLTADPGNVDALLLK  199 (899)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCC--------CHHHHH--HHHHHHHHhCCCChHHHHHH
Confidence            468889999999999999999999999999999999988 8888        566666  66666667777654321   


Q ss_pred             -----CChHHHHHH----HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          78 -----SDPSYVQMI----KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        78 -----~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                           ....+...+    ..+..+|..      +..+..++.++...|++++|...+.++++..|+++..++.+|.+++.
T Consensus       200 ~~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (899)
T TIGR02917       200 GDLLLSLGNIELALAAYRKAIALRPNN------PAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQ  273 (899)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence                 000111111    113334444      66777778888888888888888888888888887777777777664


Q ss_pred             c
Q psy3020         149 A  149 (150)
Q Consensus       149 ~  149 (150)
                      +
T Consensus       274 ~  274 (899)
T TIGR02917       274 K  274 (899)
T ss_pred             h
Confidence            3

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.23  E-value=1.9e-10  Score=93.36  Aligned_cols=107  Identities=11%  Similarity=0.168  Sum_probs=78.0

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChH
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPS   81 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~   81 (150)
                      +|.++...|++++|+..|+++|+++|+++.++..++.+ ...|        .+.+|+  ..+.+.+...|+         
T Consensus        55 lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g--------~~~eA~--~~l~~~l~~~P~---------  115 (765)
T PRK10049         55 VAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG--------QYDEAL--VKAKQLVSGAPD---------  115 (765)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--------CHHHHH--HHHHHHHHhCCC---------
Confidence            45566666666666666666666666666666666666 5555        444444  444444444443         


Q ss_pred             HHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          82 YVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                                   .      +. +..+|.++...|++++|+..|+++++++|+++.++..+|.++..
T Consensus       116 -------------~------~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~  162 (765)
T PRK10049        116 -------------K------AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN  162 (765)
T ss_pred             -------------C------HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence                         2      66 88999999999999999999999999999999999999988754

>KOG2002|consensus

Probab=99.23  E-value=3.2e-10  Score=90.82  Aligned_cols=138  Identities=18%  Similarity=0.262  Sum_probs=106.0

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCC-
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD-   79 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~-   79 (150)
                      .+|.|+.++++.+.|+..|++||++||+++.+..+|+.+ ..-.+.+     .+..++  ..+..+...++.++.+++- 
T Consensus       204 gig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~-----s~~~~~--~ll~~ay~~n~~nP~~l~~L  276 (1018)
T KOG2002|consen  204 GIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSD-----SYKKGV--QLLQRAYKENNENPVALNHL  276 (1018)
T ss_pred             hhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchH-----HHHHHH--HHHHHHHhhcCCCcHHHHHH
Confidence            579999999999999999999999999999999999998 5555333     677777  7788888888888864211 


Q ss_pred             -------hHH---HHHHHH-HhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCC-cchhhcHHHHHH
Q psy3020          80 -------PSY---VQMIKE-IQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTN-HILFSNRSAAFA  147 (150)
Q Consensus        80 -------~~~---~~~~~~-l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~n~a~~~~  147 (150)
                             +.+   ...... +....   .....+..++.+|..+..+|+|++|..+|-+++..+|++ ...++-+|..|+
T Consensus       277 An~fyfK~dy~~v~~la~~ai~~t~---~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i  353 (1018)
T KOG2002|consen  277 ANHFYFKKDYERVWHLAEHAIKNTE---NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI  353 (1018)
T ss_pred             HHHHhhcccHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH
Confidence                   111   111111 11110   001337889999999999999999999999999999999 788888999888


Q ss_pred             hc
Q psy3020         148 KA  149 (150)
Q Consensus       148 ~~  149 (150)
                      ..
T Consensus       354 ~~  355 (1018)
T KOG2002|consen  354 KR  355 (1018)
T ss_pred             Hh
Confidence            65

>KOG3060|consensus

Probab=99.23  E-value=2.3e-10  Score=79.82  Aligned_cols=109  Identities=17%  Similarity=0.200  Sum_probs=87.4

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChH
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPS   81 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~   81 (150)
                      -|+.+...|+|++|++.|+..|+-||+|.-.+.....+ ..+|        +-..++  ..+...+...+.+        
T Consensus        92 kam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~G--------K~l~aI--k~ln~YL~~F~~D--------  153 (289)
T KOG3060|consen   92 KAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQG--------KNLEAI--KELNEYLDKFMND--------  153 (289)
T ss_pred             HHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcC--------CcHHHH--HHHHHHHHHhcCc--------
Confidence            47778888999999999999999999988888766666 7777        334455  4554444444322        


Q ss_pred             HHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          82 YVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                                          .++|..++.+|+..|+|++|.-||++.+-+.|.++..+..+|.+++-+
T Consensus       154 --------------------~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~  201 (289)
T KOG3060|consen  154 --------------------QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQ  201 (289)
T ss_pred             --------------------HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence                                789999999999999999999999999999999999998888887643

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.21  E-value=4.7e-10  Score=66.22  Aligned_cols=95  Identities=26%  Similarity=0.418  Sum_probs=80.2

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.++...|++++|+..++++++..|++..++..++.+ ...+        .+..++  ..+...+...|..       
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~a~--~~~~~~~~~~~~~-------   67 (100)
T cd00189           5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLG--------KYEEAL--EDYEKALELDPDN-------   67 (100)
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH--------HHHHHH--HHHHHHHhCCCcc-------
Confidence            578999999999999999999999999999999999999 7777        555666  5555555555532       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT  134 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  134 (150)
                                           ...+..+|.++...|++++|...+.+++..+|+
T Consensus        68 ---------------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          68 ---------------------AKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             ---------------------hhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence                                 456888999999999999999999999999884

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.21  E-value=1.9e-10  Score=75.35  Aligned_cols=91  Identities=13%  Similarity=0.009  Sum_probs=73.8

Q ss_pred             HhhccC-CCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhH
Q psy3020          22 EGLKLD-PNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLE   99 (150)
Q Consensus        22 ~aL~~~-p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   99 (150)
                      ....++ |+.-+....++.. ...|        ++.+|.  .-+......+|.+                          
T Consensus        25 ~l~~~~~~~~l~~lY~~A~~ly~~G--------~l~~A~--~~f~~L~~~Dp~~--------------------------   68 (157)
T PRK15363         25 MLLDDDVTQPLNTLYRYAMQLMEVK--------EFAGAA--RLFQLLTIYDAWS--------------------------   68 (157)
T ss_pred             HHHCCChHHHHHHHHHHHHHHHHCC--------CHHHHH--HHHHHHHHhCccc--------------------------
Confidence            345677 7777888888887 8888        556665  4444444555532                          


Q ss_pred             HHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhcC
Q psy3020         100 AKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKAI  150 (150)
Q Consensus       100 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~~  150 (150)
                        +..|.++|.++..+|+|++|+.+|.+|+.++|++|..++|.|.|++.++
T Consensus        69 --~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG  117 (157)
T PRK15363         69 --FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACD  117 (157)
T ss_pred             --HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence              8899999999999999999999999999999999999999999998753

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.20  E-value=3.8e-10  Score=79.21  Aligned_cols=103  Identities=17%  Similarity=0.099  Sum_probs=86.7

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcH---HHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNE---QMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~---~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~   77 (150)
                      .+|.++...|++++|+..|+++++.+|+++   .++..+|.+ ...|        ++.+|+  ..+.+.++..|++... 
T Consensus        38 ~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~--------~~~~A~--~~~~~~l~~~p~~~~~-  106 (235)
T TIGR03302        38 EEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSG--------DYAEAI--AAADRFIRLHPNHPDA-  106 (235)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcC--------CHHHHH--HHHHHHHHHCcCCCch-
Confidence            578999999999999999999999999876   577889999 8888        667788  7888888888865441 


Q ss_pred             CChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHh--------cCHHHHHHHHHHHHhhcCCCcchh
Q psy3020          78 SDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQA--------NNFKEAIEAYSEAIKLDGTNHILF  139 (150)
Q Consensus        78 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~  139 (150)
                                              ..++..+|.+++..        |++++|++.|++++..+|++...+
T Consensus       107 ------------------------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  152 (235)
T TIGR03302       107 ------------------------DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAP  152 (235)
T ss_pred             ------------------------HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHH
Confidence                                    34677788888765        899999999999999999987553

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0547|consensus

Probab=99.20  E-value=1.9e-10  Score=86.63  Aligned_cols=129  Identities=12%  Similarity=0.172  Sum_probs=96.0

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh-
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP-   80 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~-   80 (150)
                      +|..|....+-++-..+|++|.++||+|++++..+|++ ..++        ++++|.  .++.++++++|++.-.+-+. 
T Consensus       366 ~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~--------q~e~A~--aDF~Kai~L~pe~~~~~iQl~  435 (606)
T KOG0547|consen  366 RAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQ--------QYEEAI--ADFQKAISLDPENAYAYIQLC  435 (606)
T ss_pred             HHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHH--------HHHHHH--HHHHHHhhcChhhhHHHHHHH
Confidence            57788888888899999999999999999999999998 8888        777888  88999999999876422110 


Q ss_pred             -------HHH---HHH-HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC------CcchhhcHH
Q psy3020          81 -------SYV---QMI-KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT------NHILFSNRS  143 (150)
Q Consensus        81 -------~~~---~~~-~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~n~a  143 (150)
                             .+.   ... +...+=|..      ++.+..-+.++..+++|+.|++.|.+|+++.|.      ++..+.+.|
T Consensus       436 ~a~Yr~~k~~~~m~~Fee~kkkFP~~------~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka  509 (606)
T KOG0547|consen  436 CALYRQHKIAESMKTFEEAKKKFPNC------PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKA  509 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCC------chHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhh
Confidence                   000   000 112222333      788888889999999999999999999999999      667776666


Q ss_pred             HHHH
Q psy3020         144 AAFA  147 (150)
Q Consensus       144 ~~~~  147 (150)
                      .+.+
T Consensus       510 ~l~~  513 (606)
T KOG0547|consen  510 LLVL  513 (606)
T ss_pred             Hhhh
Confidence            6554

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.18  E-value=4.8e-10  Score=83.95  Aligned_cols=132  Identities=11%  Similarity=0.090  Sum_probs=85.8

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC----
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF----   76 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~----   76 (150)
                      .+|.+|...|++++|+..|+++++.+|.+..++..++.+ ...|        ++.+|+  ..+...+...|.....    
T Consensus       112 ~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g--------~~~~A~--~~~~~~~~~~~~~~~~~~~~  181 (389)
T PRK11788        112 ELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEK--------DWQKAI--DVAERLEKLGGDSLRVEIAH  181 (389)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhc--------hHHHHH--HHHHHHHHhcCCcchHHHHH
Confidence            467888888888888888888888888888888888888 7777        445555  4444445444443210    


Q ss_pred             ---------CCChHHHHH---HHH-HhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCC-cchhhcH
Q psy3020          77 ---------LSDPSYVQM---IKE-IQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTN-HILFSNR  142 (150)
Q Consensus        77 ---------~~~~~~~~~---~~~-l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~n~  142 (150)
                               .....+...   +.. +...|..      ..++..+|.++.+.|++++|++.|+++++.+|.+ ...+..+
T Consensus       182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l  255 (389)
T PRK11788        182 FYCELAQQALARGDLDAARALLKKALAADPQC------VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKL  255 (389)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHH
Confidence                     000011111   111 2223332      5677788888888888888888888888888876 3456667


Q ss_pred             HHHHHhc
Q psy3020         143 SAAFAKA  149 (150)
Q Consensus       143 a~~~~~~  149 (150)
                      +.+|..+
T Consensus       256 ~~~~~~~  262 (389)
T PRK11788        256 MECYQAL  262 (389)
T ss_pred             HHHHHHc
Confidence            7777654

>KOG2076|consensus

Probab=99.18  E-value=4.1e-10  Score=89.54  Aligned_cols=110  Identities=22%  Similarity=0.269  Sum_probs=93.8

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      ..|..++..|++++|...+.++++++|.++.++..||.+ ...|        +..++.  ....-+-+++|.+       
T Consensus       144 ~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrG--------d~eK~l--~~~llAAHL~p~d-------  206 (895)
T KOG2076|consen  144 GEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRG--------DIEKAL--NFWLLAAHLNPKD-------  206 (895)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcc--------cHHHHH--HHHHHHHhcCCCC-------
Confidence            456778888999999999999999999999999999999 9999        666666  5555556777754       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                                           ..-|..++....++|.+.+|.-||++||+.+|.+....++++..|-++
T Consensus       207 ---------------------~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~  254 (895)
T KOG2076|consen  207 ---------------------YELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKT  254 (895)
T ss_pred             ---------------------hHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHh
Confidence                                 567888888888999999999999999999999999999998888764

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.17  E-value=2.8e-09  Score=73.35  Aligned_cols=131  Identities=11%  Similarity=0.083  Sum_probs=95.7

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCC--CCCCC--
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDP--RTKPF--   76 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~--~~~~~--   76 (150)
                      .+|.++...|++++|++.|+++++++|++..++..++.+ ...|        .+.++.  ..+.+.+...+  .....  
T Consensus        70 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g--------~~~~A~--~~~~~~~~~~~~~~~~~~~~  139 (234)
T TIGR02521        70 ALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQG--------KYEQAM--QQFEQAIEDPLYPQPARSLE  139 (234)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc--------cHHHHH--HHHHHHHhccccccchHHHH
Confidence            478999999999999999999999999999999999999 8888        555665  55555554321  11110  


Q ss_pred             --------CCCh-HHHHHH-HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHH
Q psy3020          77 --------LSDP-SYVQMI-KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF  146 (150)
Q Consensus        77 --------~~~~-~~~~~~-~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~  146 (150)
                              ..+. .....+ ..+...|..      +..+..+|.+++..|++++|+..+++++++.|+++..+..++.++
T Consensus       140 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  213 (234)
T TIGR02521       140 NAGLCALKAGDFDKAEKYLTRALQIDPQR------PESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIA  213 (234)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcCC------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence                    0000 011111 112233433      678899999999999999999999999999999888888777776


Q ss_pred             Hh
Q psy3020         147 AK  148 (150)
Q Consensus       147 ~~  148 (150)
                      ..
T Consensus       214 ~~  215 (234)
T TIGR02521       214 RA  215 (234)
T ss_pred             HH
Confidence            54

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1125|consensus

Probab=99.17  E-value=8.8e-11  Score=89.54  Aligned_cols=95  Identities=17%  Similarity=0.284  Sum_probs=85.5

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .||..|.-.|+|++|++||+.||+.+|+|.-.|..||.. ....        ..++|+  .-|.+++.+.|.+       
T Consensus       435 ~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~--------~s~EAI--sAY~rALqLqP~y-------  497 (579)
T KOG1125|consen  435 GLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGN--------RSEEAI--SAYNRALQLQPGY-------  497 (579)
T ss_pred             hhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCc--------ccHHHH--HHHHHHHhcCCCe-------
Confidence            589999999999999999999999999999999999887 4433        557788  8889999988865       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT  134 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  134 (150)
                                           ..+++++|..++.+|.|.+|+++|-.||.+.+.
T Consensus       498 ---------------------VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  498 ---------------------VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             ---------------------eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence                                 667899999999999999999999999999887

>KOG0547|consensus

Probab=99.16  E-value=3.1e-10  Score=85.46  Aligned_cols=63  Identities=17%  Similarity=0.184  Sum_probs=55.4

Q ss_pred             hHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC
Q psy3020           4 YSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF   76 (150)
Q Consensus         4 g~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~   76 (150)
                      |..++-+++|++|+.+|++++.++|+|+.++..++-. +.++        .+.+++  ..+..+.+..|+.++.
T Consensus       401 gQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~--------k~~~~m--~~Fee~kkkFP~~~Ev  464 (606)
T KOG0547|consen  401 GQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQH--------KIAESM--KTFEEAKKKFPNCPEV  464 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHH--------HHHHHH--HHHHHHHHhCCCCchH
Confidence            5667778999999999999999999999999999988 8888        677777  8888888888888774

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=7.1e-10  Score=79.10  Aligned_cols=101  Identities=21%  Similarity=0.229  Sum_probs=82.1

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .||.+|+.+|++..|...|.+|+++.|+|++.+.+++.+ ..+....     ...++.  .-+.+++..||.+       
T Consensus       161 ~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~-----~ta~a~--~ll~~al~~D~~~-------  226 (287)
T COG4235         161 LLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQ-----MTAKAR--ALLRQALALDPAN-------  226 (287)
T ss_pred             HHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCc-----ccHHHH--HHHHHHHhcCCcc-------
Confidence            589999999999999999999999999999999999998 5444221     222233  4445555656543       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcc
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHI  137 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~  137 (150)
                                           ..+...+|..+++.|+|.+|+..+...++..|.+..
T Consensus       227 ---------------------iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         227 ---------------------IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             ---------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence                                 788899999999999999999999999999997754

>KOG0624|consensus

Probab=99.13  E-value=7.5e-10  Score=80.55  Aligned_cols=138  Identities=18%  Similarity=0.184  Sum_probs=103.8

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC----
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF----   76 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~----   76 (150)
                      -+|..++..|++.+|+.+|-.|++.||+|..+.+..+.+ ..+|        .-+.++  +++.+.+.+.|+...+    
T Consensus        43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmG--------ksk~al--~Dl~rVlelKpDF~~ARiQR  112 (504)
T KOG0624|consen   43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMG--------KSKAAL--QDLSRVLELKPDFMAARIQR  112 (504)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhc--------CCccch--hhHHHHHhcCccHHHHHHHh
Confidence            478999999999999999999999999999999999999 9999        445667  8899999999987753    


Q ss_pred             ----CCChHHHHHHHH----HhcCcchhhh---HHH------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchh
Q psy3020          77 ----LSDPSYVQMIKE----IQKDPSLMTL---EAK------ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILF  139 (150)
Q Consensus        77 ----~~~~~~~~~~~~----l~~~~~~~~~---~~~------~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  139 (150)
                          +.++.+.++...    +..+|+.-..   ..+      -..+.......+..|++..|++..++.|++-|+++.++
T Consensus       113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~  192 (504)
T KOG0624|consen  113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLR  192 (504)
T ss_pred             chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHH
Confidence                222223333222    3333322111   111      22333344455678999999999999999999999999


Q ss_pred             hcHHHHHHhc
Q psy3020         140 SNRSAAFAKA  149 (150)
Q Consensus       140 ~n~a~~~~~~  149 (150)
                      ..|+.||+..
T Consensus       193 ~~Rakc~i~~  202 (504)
T KOG0624|consen  193 QARAKCYIAE  202 (504)
T ss_pred             HHHHHHHHhc
Confidence            9999999864

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.12  E-value=1.4e-09  Score=81.41  Aligned_cols=130  Identities=14%  Similarity=0.117  Sum_probs=89.2

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC-----
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF-----   76 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~-----   76 (150)
                      .|..+...|++++|+..|+++++.+|+++.++..++.+ ...|        ++.+++  ..+...+. .|.....     
T Consensus        41 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~--~~~~~~l~-~~~~~~~~~~~~  109 (389)
T PRK11788         41 KGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRG--------EVDRAI--RIHQNLLS-RPDLTREQRLLA  109 (389)
T ss_pred             HHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC--------cHHHHH--HHHHHHhc-CCCCCHHHHHHH
Confidence            57888899999999999999999999999999999999 8888        555665  44444443 2221100     


Q ss_pred             --------CCChHHHHH---HHH-HhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcc-----hh
Q psy3020          77 --------LSDPSYVQM---IKE-IQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHI-----LF  139 (150)
Q Consensus        77 --------~~~~~~~~~---~~~-l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~  139 (150)
                              .....+...   +.. +...|..      ..++..++.++.+.|++++|++.+.+++..+|.+..     .+
T Consensus       110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  183 (389)
T PRK11788        110 LQELGQDYLKAGLLDRAEELFLQLVDEGDFA------EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFY  183 (389)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHcCCcch------HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence                    000011111   111 2222322      677888898999999999999999999998887643     45


Q ss_pred             hcHHHHHHhc
Q psy3020         140 SNRSAAFAKA  149 (150)
Q Consensus       140 ~n~a~~~~~~  149 (150)
                      .++|.++.++
T Consensus       184 ~~la~~~~~~  193 (389)
T PRK11788        184 CELAQQALAR  193 (389)
T ss_pred             HHHHHHHHhC
Confidence            6677777654

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.12  E-value=1.5e-10  Score=66.15  Aligned_cols=49  Identities=29%  Similarity=0.367  Sum_probs=46.8

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhcC
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKAI  150 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~~  150 (150)
                      +..|..+|..++..|+|++|+.+|+++++++|+++.+|+++|.||.+++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~   51 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG   51 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence            6789999999999999999999999999999999999999999998763

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.10  E-value=1.4e-09  Score=73.12  Aligned_cols=96  Identities=22%  Similarity=0.305  Sum_probs=76.5

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCc---HHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNN---EQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~---~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~   77 (150)
                      .+|.++...|++++|+.+|++++++.|+.   ..++..+|.+ ..+|        .+.+++  ..+.+++...|+.    
T Consensus        40 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g--------~~~~A~--~~~~~al~~~p~~----  105 (172)
T PRK02603         40 RDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNG--------EHDKAL--EYYHQALELNPKQ----  105 (172)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHhCccc----
Confidence            57889999999999999999999988764   4688999999 8889        667777  6777777777754    


Q ss_pred             CChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHhhcCCC
Q psy3020          78 SDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANN--------------FKEAIEAYSEAIKLDGTN  135 (150)
Q Consensus        78 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~--------------~~~A~~~~~~al~~~p~~  135 (150)
                                              ...+..+|.++...|+              +.+|++++++++.++|++
T Consensus       106 ------------------------~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        106 ------------------------PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             ------------------------HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence                                    3445555666655555              788999999999999987

>KOG4162|consensus

Probab=99.10  E-value=1e-09  Score=86.20  Aligned_cols=101  Identities=21%  Similarity=0.222  Sum_probs=75.2

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChH
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPS   81 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~   81 (150)
                      .|.++...|++++|.+.|.-|+.+||+++.....+|.+ ...|+.      .+...-  ..+..+++.+|.         
T Consensus       690 ~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~------~la~~~--~~L~dalr~dp~---------  752 (799)
T KOG4162|consen  690 RGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSP------RLAEKR--SLLSDALRLDPL---------  752 (799)
T ss_pred             hhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCc------chHHHH--HHHHHHHhhCCC---------
Confidence            46677777777788888888888888877777777777 666633      122211  133444555553         


Q ss_pred             HHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchh
Q psy3020          82 YVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILF  139 (150)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  139 (150)
                                   .      +++|+.+|.++.+.|+.++|.+||.-|+++++.+|..-
T Consensus       753 -------------n------~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~p  791 (799)
T KOG4162|consen  753 -------------N------HEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLP  791 (799)
T ss_pred             -------------C------HHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCccc
Confidence                         3      88999999999999999999999999999999998653

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.09  E-value=2.9e-10  Score=64.95  Aligned_cols=61  Identities=23%  Similarity=0.338  Sum_probs=54.2

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDP   71 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~   71 (150)
                      .+|.+++..|+|++|+.+|+++++++|+++.++..+|.+ ..+|+       .+.+++  ..+.+++.++|
T Consensus         8 ~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~-------~~~~A~--~~~~~al~l~P   69 (69)
T PF13414_consen    8 NLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGK-------DYEEAI--EDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTT-------HHHHHH--HHHHHHHHHST
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCc-------cHHHHH--HHHHHHHHcCc
Confidence            479999999999999999999999999999999999999 88882       256777  78888888877

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.09  E-value=2.4e-10  Score=64.52  Aligned_cols=63  Identities=25%  Similarity=0.393  Sum_probs=56.0

Q ss_pred             ChhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCC
Q psy3020           1 MTTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRT   73 (150)
Q Consensus         1 ~~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~   73 (150)
                      +.+|..++..|++++|+.+|+++++.+|++++++..+|.+ ..+|        ++.++.  ..+.+.+..+|++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g--------~~~~A~--~~~~~a~~~~P~~   64 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQG--------RYDEAL--AYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT---------HHHHH--HHHHHHHHHSTT-
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHHCcCC
Confidence            3689999999999999999999999999999999999999 9999        667787  7788888888875

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.07  E-value=4.6e-09  Score=73.52  Aligned_cols=108  Identities=13%  Similarity=0.088  Sum_probs=91.8

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChH
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPS   81 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~   81 (150)
                      .|..++..|+|..|+..+.++..++|+|.++|+.+|.+ ...|++        ..|-  ..+.+++.+.|..        
T Consensus       106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~--------~~Ar--~ay~qAl~L~~~~--------  167 (257)
T COG5010         106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRF--------DEAR--RAYRQALELAPNE--------  167 (257)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccCh--------hHHH--HHHHHHHHhccCC--------
Confidence            68889999999999999999999999999999999999 888954        4444  5566666666643        


Q ss_pred             HHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          82 YVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                                          +....++|..++-.|+++.|...+.++...-|.++..-.|++.+...
T Consensus       168 --------------------p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~  214 (257)
T COG5010         168 --------------------PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGL  214 (257)
T ss_pred             --------------------chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh
Confidence                                66788999999999999999999999999999899999999887654

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=99.06  E-value=2.8e-09  Score=86.57  Aligned_cols=136  Identities=10%  Similarity=0.141  Sum_probs=99.0

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCC-------------CchhhhhCChHHHHhh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRG-------------DPFANLFSDPNIFVQL   67 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~-------------~~~~~a~~~~~~~~~l   67 (150)
                      ++|.||.++|++++|...|+++|++||+|+.+...+|.. ... +.+ +|.             .++.+++  .-+.+.+
T Consensus       121 ~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~-KA~~m~~KAV~~~i~~kq~~~~~--e~W~k~~  196 (906)
T PRK14720        121 TLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKE-KAITYLKKAIYRFIKKKQYVGIE--EIWSKLV  196 (906)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHH-HHHHHHHHHHHHHHhhhcchHHH--HHHHHHH
Confidence            689999999999999999999999999999999999987 544 333 111             1223333  2233334


Q ss_pred             ccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHH-hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHH
Q psy3020          68 QLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAK-ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF  146 (150)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~  146 (150)
                      ..+|++..     .|...++.+.+....    .+ ...+..+-..+...++|++++..+..+|+++|+|..+.+.++.||
T Consensus       197 ~~~~~d~d-----~f~~i~~ki~~~~~~----~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y  267 (906)
T PRK14720        197 HYNSDDFD-----FFLRIERKVLGHREF----TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFY  267 (906)
T ss_pred             hcCcccch-----HHHHHHHHHHhhhcc----chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHH
Confidence            55555444     234444444333221    22 666777778888999999999999999999999999999999999


Q ss_pred             HhcC
Q psy3020         147 AKAI  150 (150)
Q Consensus       147 ~~~~  150 (150)
                      .+.+
T Consensus       268 ~~kY  271 (906)
T PRK14720        268 KEKY  271 (906)
T ss_pred             HHHc
Confidence            8653

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.06  E-value=3.9e-09  Score=70.64  Aligned_cols=104  Identities=19%  Similarity=0.261  Sum_probs=77.5

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCc---HHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNN---EQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~---~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~   77 (150)
                      .+|.++...|++++|+..|++++.+.|+.   +.++..+|.+ ...|        .+.+|+  ..+.+++.++|.....+
T Consensus        40 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g--------~~~eA~--~~~~~Al~~~~~~~~~~  109 (168)
T CHL00033         40 RDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG--------EHTKAL--EYYFQALERNPFLPQAL  109 (168)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHhCcCcHHHH
Confidence            57899999999999999999999998763   4588999999 8888        667788  77888888777543211


Q ss_pred             CChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHH-------HHHHHHHHHHhhcCCCc
Q psy3020          78 SDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFK-------EAIEAYSEAIKLDGTNH  136 (150)
Q Consensus        78 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-------~A~~~~~~al~~~p~~~  136 (150)
                           ...                ...+..+|..+...|+++       +|+.+|.+++..+|++.
T Consensus       110 -----~~l----------------a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        110 -----NNM----------------AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             -----HHH----------------HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence                 000                344555555555777766       77777788899999653

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.02  E-value=2.9e-10  Score=81.95  Aligned_cols=135  Identities=13%  Similarity=0.201  Sum_probs=44.7

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhh-cc-CCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCC---
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGL-KL-DPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKP---   75 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL-~~-~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~---   75 (150)
                      .+|.++...|++++|++.+++.+ .. +|++++.|..++.+ ..+++.+ .+...+.+         .+..++....   
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~-~A~~ay~~---------l~~~~~~~~~~~~   82 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYD-EAIEAYEK---------LLASDKANPQDYE   82 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc---------ccccccccccccc
Confidence            46788899999999999996655 44 48899999989988 8888554 22211211         1111111110   


Q ss_pred             -----------------------------CC----------CC-hHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHh
Q psy3020          76 -----------------------------FL----------SD-PSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQA  115 (150)
Q Consensus        76 -----------------------------~~----------~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~  115 (150)
                                                   ++          .+ ......+..+...+..   +..+..|..+|.++.+.
T Consensus        83 ~l~~l~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~a~~~~~~  159 (280)
T PF13429_consen   83 RLIQLLQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAA---PDSARFWLALAEIYEQL  159 (280)
T ss_dssp             -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T------T-HHHHHHHHHHHHHC
T ss_pred             ccccccccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCC---CCCHHHHHHHHHHHHHc
Confidence                                         00          00 0111111211111100   12277889999999999


Q ss_pred             cCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         116 NNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       116 ~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      |++++|+++|+++++++|+++.+...++.+++..
T Consensus       160 G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~  193 (280)
T PF13429_consen  160 GDPDKALRDYRKALELDPDDPDARNALAWLLIDM  193 (280)
T ss_dssp             CHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTT
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC
Confidence            9999999999999999999999999998887654

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.02  E-value=6.8e-09  Score=78.16  Aligned_cols=110  Identities=18%  Similarity=0.166  Sum_probs=97.8

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChH
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPS   81 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~   81 (150)
                      .+..++..|.+++|+..++..++..|+|+..+...+++ ...|        +..+|.  .-+.+++.++|+.        
T Consensus       312 ~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~n--------k~~~A~--e~~~kal~l~P~~--------  373 (484)
T COG4783         312 RALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEAN--------KAKEAI--ERLKKALALDPNS--------  373 (484)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------ChHHHH--HHHHHHHhcCCCc--------
Confidence            46678889999999999999999999999999999999 8888        666777  7777778888853        


Q ss_pred             HHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhcC
Q psy3020          82 YVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKAI  150 (150)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~~  150 (150)
                                          +..+.++|+.+++.|++.+|+..++..+.-+|+++..|..+|.+|-+++
T Consensus       374 --------------------~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g  422 (484)
T COG4783         374 --------------------PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELG  422 (484)
T ss_pred             --------------------cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhC
Confidence                                5678899999999999999999999999999999999999999997763

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.01  E-value=5.9e-09  Score=83.42  Aligned_cols=104  Identities=5%  Similarity=-0.119  Sum_probs=90.4

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .++.++.+.+++++|+..++++|+.+|+++.++..+|.+ ..+|        .+.+|+  .-+.+.+..+|+.       
T Consensus       125 ~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g--------~~~~A~--~~y~~~~~~~p~~-------  187 (694)
T PRK15179        125 LMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIG--------QSEQAD--ACFERLSRQHPEF-------  187 (694)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhc--------chHHHH--HHHHHHHhcCCCc-------
Confidence            578999999999999999999999999999999999999 9999        667777  6666666655532       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHH
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRS  143 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a  143 (150)
                                           +.+|..+|..+.+.|+.++|+..|.++++...+-...|.++.
T Consensus       188 ---------------------~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~  229 (694)
T PRK15179        188 ---------------------ENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL  229 (694)
T ss_pred             ---------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence                                 789999999999999999999999999999888766655543

>KOG1173|consensus

Probab=99.00  E-value=5.3e-09  Score=79.96  Aligned_cols=146  Identities=17%  Similarity=0.198  Sum_probs=99.3

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccC----------------CCC----------Cch
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDM----------------NRG----------DPF   54 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~----------------~~~----------~~~   54 (150)
                      .+|..|.-.|++++|..+|-||..+||.+.++|.+.|-. ..+++.++                .|-          +-+
T Consensus       317 aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~  396 (611)
T KOG1173|consen  317 AVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNL  396 (611)
T ss_pred             hHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccH
Confidence            478889999999999999999999999999999999988 77774430                000          011


Q ss_pred             hhhhCChHHHHhhccCCCCCCCCCC--------hHHHHHHHHHhcCcchhhh----HHH-hHHHHHHHHHHHHhcCHHHH
Q psy3020          55 ANLFSDPNIFVQLQLDPRTKPFLSD--------PSYVQMIKEIQKDPSLMTL----EAK-ISLLKDKGNAALQANNFKEA  121 (150)
Q Consensus        55 ~~a~~~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~----~~~-~~~~~~~g~~~~~~~~~~~A  121 (150)
                      +-|-  .-+..++.+.|.++....+        ..+..+..-+.+....+..    -.+ ...+.++|-++.+.+.+++|
T Consensus       397 kLAe--~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eA  474 (611)
T KOG1173|consen  397 KLAE--KFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEA  474 (611)
T ss_pred             HHHH--HHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHH
Confidence            1111  3334456677776654322        1122222111111100000    011 34578899999999999999


Q ss_pred             HHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         122 IEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       122 ~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      |.+|+++|.+.|.++..+...|.+|.-+
T Consensus       475 I~~~q~aL~l~~k~~~~~asig~iy~ll  502 (611)
T KOG1173|consen  475 IDYYQKALLLSPKDASTHASIGYIYHLL  502 (611)
T ss_pred             HHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence            9999999999999999999999999765

>PLN02789 farnesyltranstransferase

Probab=99.00  E-value=7.6e-09  Score=76.01  Aligned_cols=132  Identities=14%  Similarity=0.104  Sum_probs=98.2

Q ss_pred             hhHHHHhhC-CHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCC-
Q psy3020           3 TYSCLSYLG-RYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD-   79 (150)
Q Consensus         3 lg~~~~~~~-~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~-   79 (150)
                      -|.++..+| ++++++..++++++.+|++..+|..++.+ ..+|..      ...+.+  .-+.+++..+|++..+... 
T Consensus        77 R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~------~~~~el--~~~~kal~~dpkNy~AW~~R  148 (320)
T PLN02789         77 RRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPD------AANKEL--EFTRKILSLDAKNYHAWSHR  148 (320)
T ss_pred             HHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCch------hhHHHH--HHHHHHHHhCcccHHHHHHH
Confidence            367888888 68999999999999999999999999988 777731      123445  5666888999987653110 


Q ss_pred             -------hHHHHHH----HHHhcCcchhhhHHHhHHHHHHHHHHHHh---cCH----HHHHHHHHHHHhhcCCCcchhhc
Q psy3020          80 -------PSYVQMI----KEIQKDPSLMTLEAKISLLKDKGNAALQA---NNF----KEAIEAYSEAIKLDGTNHILFSN  141 (150)
Q Consensus        80 -------~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~----~~A~~~~~~al~~~p~~~~~~~n  141 (150)
                             ..+...+    ..++.++..      ..+|..+|.++...   |.+    ++++++..++|.++|+|..+|++
T Consensus       149 ~w~l~~l~~~~eeL~~~~~~I~~d~~N------~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Y  222 (320)
T PLN02789        149 QWVLRTLGGWEDELEYCHQLLEEDVRN------NSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRY  222 (320)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHCCCc------hhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHH
Confidence                   0111111    224555655      89999999988765   333    57888889999999999999999


Q ss_pred             HHHHHHh
Q psy3020         142 RSAAFAK  148 (150)
Q Consensus       142 ~a~~~~~  148 (150)
                      ++.++..
T Consensus       223 l~~ll~~  229 (320)
T PLN02789        223 LRGLFKD  229 (320)
T ss_pred             HHHHHhc
Confidence            9998865

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.98  E-value=2.5e-09  Score=63.47  Aligned_cols=80  Identities=26%  Similarity=0.370  Sum_probs=60.3

Q ss_pred             hCCHHHHHHHHHHhhccCCC--cHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHH
Q psy3020          10 LGRYKESISTYEEGLKLDPN--NEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMI   86 (150)
Q Consensus        10 ~~~~~~A~~~~~~aL~~~p~--~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   86 (150)
                      .|+|+.|+..|+++++.+|+  +..++..+|.+ ..+|        ++.+|+  .-+.+ ...+|.              
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~--------~y~~A~--~~~~~-~~~~~~--------------   56 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQG--------KYEEAI--ELLQK-LKLDPS--------------   56 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTT--------HHHHHH--HHHHC-HTHHHC--------------
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCC--------CHHHHH--HHHHH-hCCCCC--------------
Confidence            68999999999999999995  56678889999 9999        666666  33322 222221              


Q ss_pred             HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy3020          87 KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEA  128 (150)
Q Consensus        87 ~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a  128 (150)
                              .      +.....+|.++++.|+|++|+++|.++
T Consensus        57 --------~------~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   57 --------N------PDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             --------H------HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             --------C------HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence                    1      566677799999999999999999875

>KOG3785|consensus

Probab=98.97  E-value=7.1e-09  Score=75.92  Aligned_cols=126  Identities=14%  Similarity=0.163  Sum_probs=91.7

Q ss_pred             ChhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC---
Q psy3020           1 MTTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF---   76 (150)
Q Consensus         1 ~~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~---   76 (150)
                      +|+|.|++++|+|++|+..|.-+...+..+++.+..++-+ ..+|.+        .+|.   .   .....|+++..   
T Consensus        61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y--------~eA~---~---~~~ka~k~pL~~RL  126 (557)
T KOG3785|consen   61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY--------IEAK---S---IAEKAPKTPLCIRL  126 (557)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH--------HHHH---H---HHhhCCCChHHHHH
Confidence            4899999999999999999999999888889999999988 888944        3332   1   11122332221   


Q ss_pred             -------CCC-hHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          77 -------LSD-PSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        77 -------~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                             +++ ......-..++..         .+.-..++.+.+.+-.|.+||+.|++.+..+|+-..+..++|.||.+
T Consensus       127 lfhlahklndEk~~~~fh~~LqD~---------~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyK  197 (557)
T KOG3785|consen  127 LFHLAHKLNDEKRILTFHSSLQDT---------LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYK  197 (557)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHhhh---------HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHh
Confidence                   111 1222222222211         34456677888889999999999999999999999999999999988


Q ss_pred             c
Q psy3020         149 A  149 (150)
Q Consensus       149 ~  149 (150)
                      +
T Consensus       198 l  198 (557)
T KOG3785|consen  198 L  198 (557)
T ss_pred             c
Confidence            6

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.97  E-value=1.3e-08  Score=72.89  Aligned_cols=100  Identities=12%  Similarity=0.067  Sum_probs=84.3

Q ss_pred             hHHH-HhhCCHHHHHHHHHHhhccCCCc---HHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCC
Q psy3020           4 YSCL-SYLGRYKESISTYEEGLKLDPNN---EQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS   78 (150)
Q Consensus         4 g~~~-~~~~~~~~A~~~~~~aL~~~p~~---~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~   78 (150)
                      |..+ +..|+|++|+..|++.++..|++   +.++..+|.+ ...|        ++.+|.  ..+...+...|++..   
T Consensus       149 A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g--------~~~~A~--~~f~~vv~~yP~s~~---  215 (263)
T PRK10803        149 AIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG--------KKDDAA--YYFASVVKNYPKSPK---  215 (263)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHHCCCCcc---
Confidence            3444 56799999999999999999998   4799999999 8888        667777  777777777776433   


Q ss_pred             ChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcch
Q psy3020          79 DPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHIL  138 (150)
Q Consensus        79 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~  138 (150)
                                      .      +.++..+|.++...|++++|++.|++.++..|++..+
T Consensus       216 ----------------~------~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        216 ----------------A------ADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             ----------------h------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence                            1      7889999999999999999999999999999987743

>PRK15331 chaperone protein SicA; Provisional

Probab=98.97  E-value=9.6e-09  Score=67.77  Aligned_cols=107  Identities=12%  Similarity=0.074  Sum_probs=88.1

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      ..|.-++..|++++|...|.-..-.||.|++.+++||.+ ..++        .+.+|+  .-+..+..+++++       
T Consensus        42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k--------~y~~Ai--~~Y~~A~~l~~~d-------  104 (165)
T PRK15331         42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKK--------QFQKAC--DLYAVAFTLLKND-------  104 (165)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHH--------HHHHHH--HHHHHHHHcccCC-------
Confidence            457778999999999999999999999999999999999 9999        667777  6665555555544       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                                           +...+..|.+++..|+.++|..+|..+++ .|.++.+ ..+|..++.
T Consensus       105 ---------------------p~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l-~~~A~~~L~  149 (165)
T PRK15331        105 ---------------------YRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESL-RAKALVYLE  149 (165)
T ss_pred             ---------------------CCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHH-HHHHHHHHH
Confidence                                 45578889999999999999999999999 6776555 456776654

>KOG0550|consensus

Probab=98.96  E-value=1.9e-09  Score=79.86  Aligned_cols=117  Identities=20%  Similarity=0.335  Sum_probs=77.3

Q ss_pred             hHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHH---H---HhhhhccCCCC-CchhhhhCChHHHHhhccCCCCCCC
Q psy3020           4 YSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKD---V---RNQEMNDMNRG-DPFANLFSDPNIFVQLQLDPRTKPF   76 (150)
Q Consensus         4 g~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~---~---~~~g~~~~~~~-~~~~~a~~~~~~~~~l~~~~~~~~~   76 (150)
                      |.|+...++.+.|+.+|+++|.++|+...+....-.   +   ...|..  ... ..+..+.  ..+..++.++|++...
T Consensus       210 g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~--~fk~G~y~~A~--E~Yteal~idP~n~~~  285 (486)
T KOG0550|consen  210 GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGND--AFKNGNYRKAY--ECYTEALNIDPSNKKT  285 (486)
T ss_pred             ccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhh--HhhccchhHHH--HHHHHhhcCCccccch
Confidence            778999999999999999999999999886543322   2   111110  111 1456666  7788889999986552


Q ss_pred             CCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          77 LSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        77 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                      .                        +..|.+++.+..+.|+..+|+..+++|+.+||....++..||.||+-
T Consensus       286 n------------------------aklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~  333 (486)
T KOG0550|consen  286 N------------------------AKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLA  333 (486)
T ss_pred             h------------------------HHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence            1                        44555566666666666666666666666666666666666666653

>KOG0543|consensus

Probab=98.94  E-value=1.1e-08  Score=75.62  Aligned_cols=106  Identities=18%  Similarity=0.241  Sum_probs=88.4

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCC----CcH-----------HHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHh
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDP----NNE-----------QMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQ   66 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p----~~~-----------~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~   66 (150)
                      -|+.|++.|+|..|+..|++|++.=+    .+.           .+|++++.| ..++        .+..|+  ..+.++
T Consensus       214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~--------~~~~Ai--~~c~kv  283 (397)
T KOG0543|consen  214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLK--------EYKEAI--ESCNKV  283 (397)
T ss_pred             hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhh--------hHHHHH--HHHHHH
Confidence            48899999999999999999887433    111           146788888 7888        667888  888888


Q ss_pred             hccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHH
Q psy3020          67 LQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF  146 (150)
Q Consensus        67 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~  146 (150)
                      |.++|++                            +.+++.+|.++...|+|+.|...|.++++++|+|..+..-+..|.
T Consensus       284 Le~~~~N----------------------------~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~  335 (397)
T KOG0543|consen  284 LELDPNN----------------------------VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLK  335 (397)
T ss_pred             HhcCCCc----------------------------hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            8888865                            788999999999999999999999999999999987776666554

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.94  E-value=1.1e-08  Score=83.20  Aligned_cols=101  Identities=12%  Similarity=0.067  Sum_probs=90.4

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.++...|++++|++.+++++...|+++.++..++.+ ...|        ...+|+  ..+.+++.++|++       
T Consensus       364 ~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g--------~~~~A~--~~l~~al~l~Pd~-------  426 (765)
T PRK10049        364 LLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARG--------WPRAAE--NELKKAEVLEPRN-------  426 (765)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--------CHHHHH--HHHHHHHhhCCCC-------
Confidence            467899999999999999999999999999999999999 8889        677888  8888888888865       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhh
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFS  140 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  140 (150)
                                           ...+..+|..+...|++++|...++++++.+|+++.+..
T Consensus       427 ---------------------~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~  465 (765)
T PRK10049        427 ---------------------INLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR  465 (765)
T ss_pred             ---------------------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence                                 556788888999999999999999999999999987654

>KOG4648|consensus

Probab=98.92  E-value=5e-09  Score=76.41  Aligned_cols=100  Identities=19%  Similarity=0.169  Sum_probs=81.5

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChH
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPS   81 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~   81 (150)
                      -|.-|++.|+|++|++||.+++.++|-|+-.+...+.. ..+.        .+..|.  .++..++.++..+        
T Consensus       103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K--------~FA~AE--~DC~~AiaLd~~Y--------  164 (536)
T KOG4648|consen  103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQK--------SFAQAE--EDCEAAIALDKLY--------  164 (536)
T ss_pred             hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHH--------HHHHHH--HhHHHHHHhhHHH--------
Confidence            37889999999999999999999999999888777766 5666        444455  6776666655421        


Q ss_pred             HHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhh
Q psy3020          82 YVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFS  140 (150)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  140 (150)
                                          ..+|..+|.+....|...+|.+.|+.+|++.|++..+.-
T Consensus       165 --------------------~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK  203 (536)
T KOG4648|consen  165 --------------------VKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKK  203 (536)
T ss_pred             --------------------HHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHH
Confidence                                677888899999999999999999999999999765543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.92  E-value=2.5e-08  Score=69.88  Aligned_cols=108  Identities=18%  Similarity=0.179  Sum_probs=81.9

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChH
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPS   81 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~   81 (150)
                      ++..+.-.|+-+.++....+++.-+|.+.+++...+.. ...|        .+..|.  ..+.++..++|++        
T Consensus        72 ~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g--------~~~~A~--~~~rkA~~l~p~d--------  133 (257)
T COG5010          72 LATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNG--------NFGEAV--SVLRKAARLAPTD--------  133 (257)
T ss_pred             HHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhc--------chHHHH--HHHHHHhccCCCC--------
Confidence            44555566666666666666666666666666555555 5555        445555  5666666666643        


Q ss_pred             HHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          82 YVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                                          +..|..+|.++.+.|++++|-..|.+++++.|+++....|+|..|+-
T Consensus       134 --------------------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L  180 (257)
T COG5010         134 --------------------WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL  180 (257)
T ss_pred             --------------------hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH
Confidence                                88899999999999999999999999999999999999999998864

>KOG1129|consensus

Probab=98.91  E-value=9.8e-09  Score=74.44  Aligned_cols=137  Identities=15%  Similarity=0.178  Sum_probs=97.4

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC----
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF----   76 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~----   76 (150)
                      .|..+|...+++..|+..|.+.|+.-|.++..+.+++.+ ..|+        .+..+.  .-+..+++.+|.+.+.    
T Consensus       261 lLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~--------~~~~a~--~lYk~vlk~~~~nvEaiAci  330 (478)
T KOG1129|consen  261 LLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME--------QQEDAL--QLYKLVLKLHPINVEAIACI  330 (478)
T ss_pred             HHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH--------hHHHHH--HHHHHHHhcCCccceeeeee
Confidence            356677777777888888888888888888888888888 8888        556666  6677777888876653    


Q ss_pred             -----C-CChH----HHHHHHHHhc-Ccchhhh----------------------------HHHhHHHHHHHHHHHHhcC
Q psy3020          77 -----L-SDPS----YVQMIKEIQK-DPSLMTL----------------------------EAKISLLKDKGNAALQANN  117 (150)
Q Consensus        77 -----~-~~~~----~~~~~~~l~~-~~~~~~~----------------------------~~~~~~~~~~g~~~~~~~~  117 (150)
                           + ++|.    |++.|-.+.. .|+-..-                            ...++.|+++|.+....|+
T Consensus       331 a~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD  410 (478)
T KOG1129|consen  331 AVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD  410 (478)
T ss_pred             eeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc
Confidence                 1 1121    2222211111 1110000                            1338999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020         118 FKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus       118 ~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                      +.-|.++|.-|+.-||++..++.|+|..-.+
T Consensus       411 ~nlA~rcfrlaL~~d~~h~ealnNLavL~~r  441 (478)
T KOG1129|consen  411 FNLAKRCFRLALTSDAQHGEALNNLAVLAAR  441 (478)
T ss_pred             hHHHHHHHHHHhccCcchHHHHHhHHHHHhh
Confidence            9999999999999999999999999987554

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.90  E-value=2.8e-08  Score=80.93  Aligned_cols=108  Identities=13%  Similarity=0.036  Sum_probs=72.7

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChH
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPS   81 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~   81 (150)
                      -+...+..|+++.|++.|+++++.+|+++.+...++.+ ...|        ...+|+  ..+.+++  +|+...      
T Consensus        40 ~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G--------~~~~A~--~~~eka~--~p~n~~------  101 (822)
T PRK14574         40 SLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAG--------RDQEVI--DVYERYQ--SSMNIS------  101 (822)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcC--------CcHHHH--HHHHHhc--cCCCCC------
Confidence            46778899999999999999999999996544477776 6666        556666  6666666  443322      


Q ss_pred             HHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          82 YVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                                          ...+..+|.++..+|+|++|++.|+++++.+|+++.++.-++.+|.+
T Consensus       102 --------------------~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~  148 (822)
T PRK14574        102 --------------------SRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQAD  148 (822)
T ss_pred             --------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh
Confidence                                33344445566666666666666666666666666666555554443

>KOG2002|consensus

Probab=98.90  E-value=5.1e-09  Score=84.15  Aligned_cols=134  Identities=16%  Similarity=0.091  Sum_probs=98.2

Q ss_pred             hhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC-----CCChHH
Q psy3020           9 YLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF-----LSDPSY   82 (150)
Q Consensus         9 ~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~-----~~~~~~   82 (150)
                      ..+.+++|++.|.++|+.||.|..+-+++|.| ...|++.     .....|  ..+.++..-.++...-     ..+..|
T Consensus       624 ~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~-----~A~dIF--sqVrEa~~~~~dv~lNlah~~~e~~qy  696 (1018)
T KOG2002|consen  624 EKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFS-----EARDIF--SQVREATSDFEDVWLNLAHCYVEQGQY  696 (1018)
T ss_pred             HHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCch-----HHHHHH--HHHHHHHhhCCceeeeHHHHHHHHHHH
Confidence            44678899999999999999999999999999 8888654     444455  5666665544443321     112345


Q ss_pred             HHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          83 VQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        83 ~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      ..+++..+.-....-+.+.+..+..+|.++++.|.+.+|.+....|+.+.|.++.+.+|+|.++.++
T Consensus       697 ~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkl  763 (1018)
T KOG2002|consen  697 RLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKL  763 (1018)
T ss_pred             HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHH
Confidence            5555443322111111123788899999999999999999999999999999999999999998764

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.89  E-value=3.4e-08  Score=80.48  Aligned_cols=106  Identities=15%  Similarity=0.188  Sum_probs=69.7

Q ss_pred             hHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHH
Q psy3020           4 YSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSY   82 (150)
Q Consensus         4 g~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~   82 (150)
                      |.++...|+|++|++.|+++++.+|+|+.++.+++.+ ...+        +..+|+  ..+.+....+|+.         
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~--------q~~eAl--~~l~~l~~~dp~~---------  169 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAG--------RGGVVL--KQATELAERDPTV---------  169 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcC--------CHHHHH--HHHHHhcccCcch---------
Confidence            5566666777777777777777777777666666555 4444        445555  4444444545431         


Q ss_pred             HHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          83 VQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        83 ~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                                          ..+..++.++...+++.+|++.|+++++.+|++...+..+..++..
T Consensus       170 --------------------~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~  215 (822)
T PRK14574        170 --------------------QNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQR  215 (822)
T ss_pred             --------------------HHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence                                1123334444446777779999999999999999998888776654

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.87  E-value=5.5e-08  Score=72.08  Aligned_cols=99  Identities=14%  Similarity=0.104  Sum_probs=81.3

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.++...|++++|+..++++++++|+++.++..++.+ ...|        .+.++.  ..+.+.+...|.....    
T Consensus       119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g--------~~~eA~--~~l~~~l~~~~~~~~~----  184 (355)
T cd05804         119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG--------RFKEGI--AFMESWRDTWDCSSML----  184 (355)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC--------CHHHHH--HHHHhhhhccCCCcch----
Confidence            367899999999999999999999999999999999999 8889        556666  6666666666542111    


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT  134 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  134 (150)
                                          ....|..++.++...|++++|+..|.+++...|.
T Consensus       185 --------------------~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~  218 (355)
T cd05804         185 --------------------RGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE  218 (355)
T ss_pred             --------------------hHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence                                0345778899999999999999999999888773

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.87  E-value=7.1e-09  Score=58.87  Aligned_cols=56  Identities=23%  Similarity=0.334  Sum_probs=40.7

Q ss_pred             HHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCC
Q psy3020           7 LSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPR   72 (150)
Q Consensus         7 ~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~   72 (150)
                      ++..|+|++|++.|+++++.+|+|.+++..++.+ ...|        ++.+|.  ..+.+.+..+|+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g--------~~~~A~--~~l~~~~~~~~~   57 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQG--------QYDEAE--ELLERLLKQDPD   57 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT---------HHHHH--HHHHCCHGGGTT
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHHCcC
Confidence            3578899999999999999999998888888887 6666        444555  444444555554

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.85  E-value=2.2e-08  Score=56.38  Aligned_cols=63  Identities=22%  Similarity=0.289  Sum_probs=49.3

Q ss_pred             HHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHH
Q psy3020          36 AIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQ  114 (150)
Q Consensus        36 ~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~  114 (150)
                      .+|.. ...|        ++.+|.  ..+...+..+|++                            +.+|..+|.+++.
T Consensus         2 ~~a~~~~~~g--------~~~~A~--~~~~~~l~~~P~~----------------------------~~a~~~lg~~~~~   43 (65)
T PF13432_consen    2 ALARALYQQG--------DYDEAI--AAFEQALKQDPDN----------------------------PEAWYLLGRILYQ   43 (65)
T ss_dssp             HHHHHHHHCT--------HHHHHH--HHHHHHHCCSTTH----------------------------HHHHHHHHHHHHH
T ss_pred             hHHHHHHHcC--------CHHHHH--HHHHHHHHHCCCC----------------------------HHHHHHHHHHHHH
Confidence            34555 5666        666777  6777677766642                            8899999999999


Q ss_pred             hcCHHHHHHHHHHHHhhcCCCc
Q psy3020         115 ANNFKEAIEAYSEAIKLDGTNH  136 (150)
Q Consensus       115 ~~~~~~A~~~~~~al~~~p~~~  136 (150)
                      +|++++|+..|+++++++|++|
T Consensus        44 ~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen   44 QGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             TT-HHHHHHHHHHHHHHSTT-H
T ss_pred             cCCHHHHHHHHHHHHHHCcCCC
Confidence            9999999999999999999985

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.84  E-value=8.2e-08  Score=74.79  Aligned_cols=127  Identities=14%  Similarity=0.014  Sum_probs=77.9

Q ss_pred             hHHHHhhCC---HHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhc--cCCCCCCCC
Q psy3020           4 YSCLSYLGR---YKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQ--LDPRTKPFL   77 (150)
Q Consensus         4 g~~~~~~~~---~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~--~~~~~~~~~   77 (150)
                      |..|...+.   ...|+.+|++|+++||+++.++-.++.+ .....+..........+.  ....+++.  .+|.....+
T Consensus       346 g~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~--~~~~~a~al~~~~~~~~~~  423 (517)
T PRK10153        346 AHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALS--TELDNIVALPELNVLPRIY  423 (517)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHH--HHHHHhhhcccCcCChHHH
Confidence            444444433   7799999999999999999999888776 443322100011223333  33333333  244333211


Q ss_pred             --------CChHHHHHH----HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchh
Q psy3020          78 --------SDPSYVQMI----KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILF  139 (150)
Q Consensus        78 --------~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  139 (150)
                              .+..+..+.    +.+..+| .      +.+|..+|.++...|++++|++.|.+|+.++|.++..+
T Consensus       424 ~ala~~~~~~g~~~~A~~~l~rAl~L~p-s------~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~  490 (517)
T PRK10153        424 EILAVQALVKGKTDEAYQAINKAIDLEM-S------WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLY  490 (517)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCC-C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHH
Confidence                    001111111    1122222 1      67899999999999999999999999999999988644

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.82  E-value=4.6e-08  Score=63.97  Aligned_cols=89  Identities=19%  Similarity=0.290  Sum_probs=65.1

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcH---HHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNE---QMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~---~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~   77 (150)
                      .+|.+++..|++++|+..|++++...|+..   .+...++.+ ...|        ++.+|+  ..+.. +   ++     
T Consensus        53 ~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~--------~~d~Al--~~L~~-~---~~-----  113 (145)
T PF09976_consen   53 QLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQG--------QYDEAL--ATLQQ-I---PD-----  113 (145)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC--------CHHHHH--HHHHh-c---cC-----
Confidence            477888888999999999999988877653   366777888 7777        555555  33311 1   10     


Q ss_pred             CChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q psy3020          78 SDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAI  129 (150)
Q Consensus        78 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al  129 (150)
                                    .+      -.+..+..+|.++...|++++|+..|++||
T Consensus       114 --------------~~------~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  114 --------------EA------FKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             --------------cc------hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence                          00      115677889999999999999999999985

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.80  E-value=9.7e-09  Score=53.48  Aligned_cols=44  Identities=14%  Similarity=0.013  Sum_probs=40.6

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHH
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAA  145 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~  145 (150)
                      +.+|..+|..+...|++++|++.|+++++.+|+++.+|..+|.+
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l   44 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL   44 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence            35789999999999999999999999999999999999988753

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.80  E-value=1.2e-07  Score=70.20  Aligned_cols=133  Identities=11%  Similarity=0.004  Sum_probs=68.7

Q ss_pred             hHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC-----
Q psy3020           4 YSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL-----   77 (150)
Q Consensus         4 g~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~-----   77 (150)
                      |.++...|++++|++.++++++.+|++..++.. +.. ..+|... .......+++     ......+|......     
T Consensus        50 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~-~~~~~~~~~l-----~~~~~~~~~~~~~~~~~a~  122 (355)
T cd05804          50 ALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFS-GMRDHVARVL-----PLWAPENPDYWYLLGMLAF  122 (355)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccc-cCchhHHHHH-----hccCcCCCCcHHHHHHHHH
Confidence            566777888888888888888888888876653 333 3333211 0000111111     11112222221110     


Q ss_pred             ---CChHHHHHH----HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcc----hhhcHHHHH
Q psy3020          78 ---SDPSYVQMI----KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHI----LFSNRSAAF  146 (150)
Q Consensus        78 ---~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~n~a~~~  146 (150)
                         ..+.+...+    ..+...|..      +..+..+|.+++..|++++|+..+.+++...|.++.    .|..+|.++
T Consensus       123 ~~~~~G~~~~A~~~~~~al~~~p~~------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~  196 (355)
T cd05804         123 GLEEAGQYDRAEEAARRALELNPDD------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY  196 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCC------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence               000111111    113333333      566677777777777777777777777777765433    244566666


Q ss_pred             Hhc
Q psy3020         147 AKA  149 (150)
Q Consensus       147 ~~~  149 (150)
                      ..+
T Consensus       197 ~~~  199 (355)
T cd05804         197 LER  199 (355)
T ss_pred             HHC
Confidence            554

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.80  E-value=7.4e-09  Score=53.92  Aligned_cols=39  Identities=21%  Similarity=0.308  Sum_probs=36.6

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV   40 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~   40 (150)
                      .+|.+|..+|++++|++.|+++++.+|+|++++..++.+
T Consensus         6 ~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l   44 (44)
T PF13428_consen    6 ALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL   44 (44)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence            589999999999999999999999999999999998853

>KOG1156|consensus

Probab=98.78  E-value=1.1e-07  Score=73.98  Aligned_cols=134  Identities=17%  Similarity=0.245  Sum_probs=90.1

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC-----
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF-----   76 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~-----   76 (150)
                      +|..+...++|++|+++|..||+++|||...+..++.+ ..|+        ++...+  ..-...+.+.|.....     
T Consensus        81 ~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmR--------d~~~~~--~tr~~LLql~~~~ra~w~~~A  150 (700)
T KOG1156|consen   81 LGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMR--------DYEGYL--ETRNQLLQLRPSQRASWIGFA  150 (700)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH--------hhhhHH--HHHHHHHHhhhhhHHHHHHHH
Confidence            68899999999999999999999999999999999999 9999        444444  3444445555543321     


Q ss_pred             -----CCC----hH-HHHHHHHHhcCcchhhh---------------------------------HHHhHHHHHHHHHHH
Q psy3020          77 -----LSD----PS-YVQMIKEIQKDPSLMTL---------------------------------EAKISLLKDKGNAAL  113 (150)
Q Consensus        77 -----~~~----~~-~~~~~~~l~~~~~~~~~---------------------------------~~~~~~~~~~g~~~~  113 (150)
                           ..+    .. +..........|+....                                 -++.......+.+++
T Consensus       151 vs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~  230 (700)
T KOG1156|consen  151 VAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLM  230 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHH
Confidence                 000    00 00000111111111111                                 022344455788999


Q ss_pred             HhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHH
Q psy3020         114 QANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF  146 (150)
Q Consensus       114 ~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~  146 (150)
                      +.+++++|+..|...+..+|++...|..+=.|+
T Consensus       231 kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~l  263 (700)
T KOG1156|consen  231 KLGQLEEAVKVYRRLLERNPDNLDYYEGLEKAL  263 (700)
T ss_pred             HHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHH
Confidence            999999999999999999999988777665555

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.77  E-value=1.9e-08  Score=49.28  Aligned_cols=34  Identities=35%  Similarity=0.541  Sum_probs=30.8

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCC
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTN  135 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~  135 (150)
                      +.+|..+|.+++.+|++++|+.+|+++++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            4689999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG1128|consensus

Probab=98.74  E-value=9.9e-08  Score=75.03  Aligned_cols=129  Identities=19%  Similarity=0.274  Sum_probs=90.0

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhh-CChHHHHh--hccCCCCCCCCC
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLF-SDPNIFVQ--LQLDPRTKPFLS   78 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~-~~~~~~~~--l~~~~~~~~~~~   78 (150)
                      +..||...|+-.+|-....+-++ .|+++..|-.+|++ ....        .++++. -+.....+  ....+   ..++
T Consensus       430 vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s--------~yEkawElsn~~sarA~r~~~~---~~~~  497 (777)
T KOG1128|consen  430 VILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPS--------LYEKAWELSNYISARAQRSLAL---LILS  497 (777)
T ss_pred             HHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChH--------HHHHHHHHhhhhhHHHHHhhcc---cccc
Confidence            34688888888888888888887 67778888888888 5555        344443 11111111  11111   1122


Q ss_pred             ChHHHHHHHH----HhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          79 DPSYVQMIKE----IQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        79 ~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      +++|.+....    +...|-.      ...|+.+|.+..+.++++.|+++|..++.++|++..+|.|++.+|+++
T Consensus       498 ~~~fs~~~~hle~sl~~nplq------~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~  566 (777)
T KOG1128|consen  498 NKDFSEADKHLERSLEINPLQ------LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRL  566 (777)
T ss_pred             chhHHHHHHHHHHHhhcCccc------hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHH
Confidence            2344443333    4445544      899999999999999999999999999999999999999999999875

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.73  E-value=4.5e-08  Score=47.79  Aligned_cols=34  Identities=35%  Similarity=0.449  Sum_probs=30.9

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCC
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTN  135 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~  135 (150)
                      +..|..+|.+++..|++++|+++|+++++++|++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4678999999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1156|consensus

Probab=98.72  E-value=5.8e-08  Score=75.43  Aligned_cols=105  Identities=15%  Similarity=0.129  Sum_probs=90.7

Q ss_pred             HHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHH
Q psy3020           7 LSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQM   85 (150)
Q Consensus         7 ~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~   85 (150)
                      .++.++|+.+++..+..|+-.|++++..-+.|.. ..+|        .-.+|.  .-+...++.|+..            
T Consensus        17 ~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg--------~~~ea~--~~vr~glr~d~~S------------   74 (700)
T KOG1156|consen   17 CYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLG--------KKEEAY--ELVRLGLRNDLKS------------   74 (700)
T ss_pred             HHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhccc--------chHHHH--HHHHHHhccCccc------------
Confidence            4578999999999999999999999999888888 8999        556666  6666677766643            


Q ss_pred             HHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          86 IKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        86 ~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                                      ...|.-+|.+...-.+|++|++||+.|+.++|+|...|..++....++
T Consensus        75 ----------------~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Qm  122 (700)
T KOG1156|consen   75 ----------------HVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQM  122 (700)
T ss_pred             ----------------chhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence                            567999999999999999999999999999999999999999887764

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.70  E-value=1.1e-07  Score=63.59  Aligned_cols=101  Identities=14%  Similarity=0.137  Sum_probs=67.2

Q ss_pred             CHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccC--CCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHH
Q psy3020          12 RYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDM--NRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKE   88 (150)
Q Consensus        12 ~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~--~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   88 (150)
                      -|+.|.+.++.....||.++++++.=|.+ ..+.+++.  ++...+.+|+  ..+..++.++|+.               
T Consensus         6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAi--sK~eeAL~I~P~~---------------   68 (186)
T PF06552_consen    6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAI--SKFEEALKINPNK---------------   68 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHH--HHHHHHHHH-TT----------------
T ss_pred             HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHH--HHHHHHHhcCCch---------------
Confidence            37889999999999999999988766655 44443321  1112456677  7777788888854               


Q ss_pred             HhcCcchhhhHHHhHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHhhcCCCcchhhcH
Q psy3020          89 IQKDPSLMTLEAKISLLKDKGNAALQA-----------NNFKEAIEAYSEAIKLDGTNHILFSNR  142 (150)
Q Consensus        89 l~~~~~~~~~~~~~~~~~~~g~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~~~n~  142 (150)
                                   ..++..+|+++...           .-|++|.++|.+|+..+|+|......+
T Consensus        69 -------------hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL  120 (186)
T PF06552_consen   69 -------------HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL  120 (186)
T ss_dssp             -------------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred             -------------HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence                         55666666666543           448899999999999999887654443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.69  E-value=1.5e-06  Score=67.62  Aligned_cols=143  Identities=20%  Similarity=0.197  Sum_probs=88.5

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC----
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF----   76 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~----   76 (150)
                      ..|.++.++|++++|...|...|+.+|+|...+.++..+ -......   ........  .-+.......|.....    
T Consensus        43 ~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~---~~~~~~~~--~~y~~l~~~yp~s~~~~rl~  117 (517)
T PF12569_consen   43 KRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLS---DEDVEKLL--ELYDELAEKYPRSDAPRRLP  117 (517)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccc---cccHHHHH--HHHHHHHHhCccccchhHhh
Confidence            368999999999999999999999999999999998777 2222110   00111111  1111111111211100    


Q ss_pred             --------------------CC--ChHHHHHHHHHhcCcchhhh---------------------------HHH--hHHH
Q psy3020          77 --------------------LS--DPSYVQMIKEIQKDPSLMTL---------------------------EAK--ISLL  105 (150)
Q Consensus        77 --------------------~~--~~~~~~~~~~l~~~~~~~~~---------------------------~~~--~~~~  105 (150)
                                          +.  -|.+..-+..+..++.....                           ++.  ..++
T Consensus       118 L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~  197 (517)
T PF12569_consen  118 LDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTL  197 (517)
T ss_pred             cccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHH
Confidence                                00  01111111222111111000                           111  3566


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         106 KDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       106 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      ..+++.+-..|++++|+++.++||+..|+.+.+|+..|.+|-..
T Consensus       198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~  241 (517)
T PF12569_consen  198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHA  241 (517)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC
Confidence            88899999999999999999999999999999999999998654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4162|consensus

Probab=98.69  E-value=2.2e-07  Score=73.50  Aligned_cols=111  Identities=20%  Similarity=0.181  Sum_probs=97.8

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      ..|..+...++.++|..|..+|-+++|-.+..++..|.+ ...|        ...+|.  ..+..++.++|++       
T Consensus       655 laa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~--------~~~EA~--~af~~Al~ldP~h-------  717 (799)
T KOG4162|consen  655 LAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKG--------QLEEAK--EAFLVALALDPDH-------  717 (799)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHH--------hhHHHH--HHHHHHHhcCCCC-------
Confidence            456778888999999999999999999999999999999 8888        556677  7777788888876       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHH--HHHHHHhhcCCCcchhhcHHHHHHhcC
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIE--AYSEAIKLDGTNHILFSNRSAAFAKAI  150 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~--~~~~al~~~p~~~~~~~n~a~~~~~~~  150 (150)
                                           +.....+|.++.+.|+-.-|..  ....|+++||.++.+|+++|.++.+++
T Consensus       718 ---------------------v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~G  768 (799)
T KOG4162|consen  718 ---------------------VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLG  768 (799)
T ss_pred             ---------------------cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcc
Confidence                                 5677888999999999888888  999999999999999999999988764

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.67  E-value=7.4e-08  Score=55.39  Aligned_cols=63  Identities=16%  Similarity=0.247  Sum_probs=56.8

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCC
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKP   75 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~   75 (150)
                      |..+|...++|++|+++++++++++|+++.++..+|.+ ..+|        ++.+++  ..+.+.+...|+...
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g--------~~~~A~--~~l~~~l~~~p~~~~   64 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLG--------RYEEAL--EDLERALELSPDDPD   64 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhc--------cHHHHH--HHHHHHHHHCCCcHH
Confidence            46789999999999999999999999999999999999 9999        778888  888889988886543

>KOG4340|consensus

Probab=98.67  E-value=6.1e-08  Score=69.70  Aligned_cols=130  Identities=17%  Similarity=0.174  Sum_probs=88.5

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.||...++|..|.+||++.-.+.|.......--++. +..+.        +..|+      +.+.+--+....+++.
T Consensus        49 lLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i--------~ADAL------rV~~~~~D~~~L~~~~  114 (459)
T KOG4340|consen   49 LLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI--------YADAL------RVAFLLLDNPALHSRV  114 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc--------cHHHH------HHHHHhcCCHHHHHHH
Confidence            589999999999999999999999999988877666666 55552        22222      1111111111111000


Q ss_pred             -HHHHHHH-----------HHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          81 -SYVQMIK-----------EIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        81 -~~~~~~~-----------~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                       ....+|.           -++.-|+.    ..+....+.|++.++.|+|++|++-|..|++...-+|.+-+|.|.|+++
T Consensus       115 lqLqaAIkYse~Dl~g~rsLveQlp~e----n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~  190 (459)
T KOG4340|consen  115 LQLQAAIKYSEGDLPGSRSLVEQLPSE----NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS  190 (459)
T ss_pred             HHHHHHHhcccccCcchHHHHHhccCC----CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh
Confidence             0111110           01111211    2278889999999999999999999999999999999999999999986


Q ss_pred             c
Q psy3020         149 A  149 (150)
Q Consensus       149 ~  149 (150)
                      .
T Consensus       191 ~  191 (459)
T KOG4340|consen  191 S  191 (459)
T ss_pred             h
Confidence            3

>KOG4642|consensus

Probab=98.65  E-value=1.1e-07  Score=66.21  Aligned_cols=94  Identities=19%  Similarity=0.166  Sum_probs=80.1

Q ss_pred             hHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHH
Q psy3020           4 YSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSY   82 (150)
Q Consensus         4 g~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~   82 (150)
                      |..++--.+|..|+.+|-+||.++|..+..++..+.+ ..+.++        +...  .+..+++.++|+.         
T Consensus        17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~--------~~v~--~dcrralql~~N~---------   77 (284)
T KOG4642|consen   17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHW--------EPVE--EDCRRALQLDPNL---------   77 (284)
T ss_pred             cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhh--------hhhh--hhHHHHHhcChHH---------
Confidence            6678888999999999999999999999999999999 777744        4444  6777888877742         


Q ss_pred             HHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCC
Q psy3020          83 VQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTN  135 (150)
Q Consensus        83 ~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~  135 (150)
                                         +.+++.+|..+.+...|++||.++.+|.++-..+
T Consensus        78 -------------------vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~  111 (284)
T KOG4642|consen   78 -------------------VKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ  111 (284)
T ss_pred             -------------------HHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence                               7889999999999999999999999997765543

>KOG2076|consensus

Probab=98.65  E-value=7.7e-07  Score=71.44  Aligned_cols=49  Identities=14%  Similarity=0.132  Sum_probs=43.7

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhcC
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKAI  150 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~~  150 (150)
                      ...|..+|.++..+|.+++|+++|.++|.++|++..+...++.+|.+++
T Consensus       449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g  497 (895)
T KOG2076|consen  449 AFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLG  497 (895)
T ss_pred             hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcC
Confidence            5678889999999999999999999999999999999999998887763

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.65  E-value=2e-07  Score=70.58  Aligned_cols=45  Identities=4%  Similarity=-0.031  Sum_probs=40.7

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hhhhhcc
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMND   47 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~   47 (150)
                      .+..+...|+++.|+..++++++.+|+++.++..++.+ ...|+++
T Consensus       159 ~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~  204 (398)
T PRK10747        159 RVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWS  204 (398)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHH
Confidence            36788899999999999999999999999999999988 8888765

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.64  E-value=3.7e-07  Score=61.06  Aligned_cols=102  Identities=11%  Similarity=0.072  Sum_probs=81.5

Q ss_pred             CCHHHHHHHHHHhhccCCCc--HHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHH
Q psy3020          11 GRYKESISTYEEGLKLDPNN--EQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIK   87 (150)
Q Consensus        11 ~~~~~A~~~~~~aL~~~p~~--~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~   87 (150)
                      ..|..+...+...++.++.+  ...+..++.+ ..+|        .+.+|+  ..+.+++.+.|+...            
T Consensus        13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g--------~~~~A~--~~~~~al~l~~~~~~------------   70 (168)
T CHL00033         13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEG--------EYAEAL--QNYYEAMRLEIDPYD------------   70 (168)
T ss_pred             cccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHhccccchh------------
Confidence            45667777787777777766  4566788888 8888        667777  677777766553211            


Q ss_pred             HHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHH
Q psy3020          88 EIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFA  147 (150)
Q Consensus        88 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~  147 (150)
                                   .+.+|.++|.++...|++++|+++|.+++.++|.....+.++|.++.
T Consensus        71 -------------~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~  117 (168)
T CHL00033         71 -------------RSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH  117 (168)
T ss_pred             -------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence                         15689999999999999999999999999999999999999999987

>KOG0553|consensus

Probab=98.64  E-value=7.5e-08  Score=68.81  Aligned_cols=49  Identities=39%  Similarity=0.689  Sum_probs=46.4

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhcC
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKAI  150 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~~  150 (150)
                      ++.++.-|+-+++.++|.+|+..|++||+++|+|+..|.|||.+|.++.
T Consensus        81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg  129 (304)
T KOG0553|consen   81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG  129 (304)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc
Confidence            8889999999999999999999999999999999999999999999863

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.64  E-value=6e-07  Score=63.68  Aligned_cols=136  Identities=4%  Similarity=-0.062  Sum_probs=89.8

Q ss_pred             ChhhHHHHhhCCHHHHHHHHHHhhccCCCcHH---HHHHHHHH-Hhhhh-----cc--CCCCC---chhhhhCChHHHHh
Q psy3020           1 MTTYSCLSYLGRYKESISTYEEGLKLDPNNEQ---MKEAIKDV-RNQEM-----ND--MNRGD---PFANLFSDPNIFVQ   66 (150)
Q Consensus         1 ~~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~---a~~~l~~~-~~~g~-----~~--~~~~~---~~~~a~~~~~~~~~   66 (150)
                      +++|.+|++.++|++|+..|++.++.+|+++.   ++..+|.+ ..++.     +.  ...++   ....|+  ..+.+.
T Consensus        73 l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~--~~~~~l  150 (243)
T PRK10866         73 LDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAF--RDFSKL  150 (243)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHH--HHHHHH
Confidence            36899999999999999999999999998764   55666655 33331     10  01111   234566  677777


Q ss_pred             hccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCc---chhhcHH
Q psy3020          67 LQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNH---ILFSNRS  143 (150)
Q Consensus        67 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~n~a  143 (150)
                      ++.-|++.-.-   .....+..+....        +.--...|..+++.|.|..|+.-++..++.-|+.+   .+.+.++
T Consensus       151 i~~yP~S~ya~---~A~~rl~~l~~~l--------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~  219 (243)
T PRK10866        151 VRGYPNSQYTT---DATKRLVFLKDRL--------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLME  219 (243)
T ss_pred             HHHCcCChhHH---HHHHHHHHHHHHH--------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHH
Confidence            78888754321   1122222221111        44445788899999999999999999999999864   5556666


Q ss_pred             HHHHhc
Q psy3020         144 AAFAKA  149 (150)
Q Consensus       144 ~~~~~~  149 (150)
                      .+|..+
T Consensus       220 ~ay~~l  225 (243)
T PRK10866        220 NAYRQL  225 (243)
T ss_pred             HHHHHc
Confidence            666543

>TIGR00540 hemY_coli hemY protein

Probab=98.63  E-value=4.8e-07  Score=68.76  Aligned_cols=46  Identities=24%  Similarity=0.304  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHH--HHHhhcCCCcchhhcHHHHHHhc
Q psy3020         103 SLLKDKGNAALQANNFKEAIEAYS--EAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       103 ~~~~~~g~~~~~~~~~~~A~~~~~--~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      ..+..+|+++++.|+|++|.++|+  .+++.+|++... ..+|.++.++
T Consensus       336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~-~~La~ll~~~  383 (409)
T TIGR00540       336 CINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL-AMAADAFDQA  383 (409)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH-HHHHHHHHHc
Confidence            677889999999999999999999  688899987764 4788888754

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4555|consensus

Probab=98.62  E-value=5.1e-07  Score=57.53  Aligned_cols=97  Identities=14%  Similarity=0.136  Sum_probs=81.4

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChH
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPS   81 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~   81 (150)
                      -|.++.+.|+.+.|++-|.++|.+-|.++.++.+.++. +..|        +.++++  .++.+++.+..+-..      
T Consensus        49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~--------~~e~AL--dDLn~AleLag~~tr------  112 (175)
T KOG4555|consen   49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQG--------DDEEAL--DDLNKALELAGDQTR------  112 (175)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcC--------ChHHHH--HHHHHHHHhcCccch------
Confidence            47788999999999999999999999999999999999 8888        667888  888888876653211      


Q ss_pred             HHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q psy3020          82 YVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDG  133 (150)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p  133 (150)
                                        ....++..+|.++..+|+-+.|-..|..|-++-.
T Consensus       113 ------------------tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  113 ------------------TACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS  146 (175)
T ss_pred             ------------------HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence                              1267889999999999999999999988766544

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.61  E-value=4.5e-07  Score=52.82  Aligned_cols=31  Identities=23%  Similarity=0.454  Sum_probs=28.5

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLD  132 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~  132 (150)
                      +..+.++|.++...|++++|+++|++++++.
T Consensus        46 a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~   76 (78)
T PF13424_consen   46 ANTLNNLGECYYRLGDYEEALEYYQKALDIF   76 (78)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            6788999999999999999999999999874

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.60  E-value=3.8e-07  Score=61.29  Aligned_cols=97  Identities=14%  Similarity=0.163  Sum_probs=73.7

Q ss_pred             HHHHHhhccCCC--cHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcc
Q psy3020          18 STYEEGLKLDPN--NEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPS   94 (150)
Q Consensus        18 ~~~~~aL~~~p~--~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~   94 (150)
                      +.+.+.+.++++  ...++..+|.+ ...|        ++.+|+  ..+.+++...|+...                   
T Consensus        20 ~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g--------~~~~A~--~~~~~al~~~~~~~~-------------------   70 (172)
T PRK02603         20 DLILKILPINKKAKEAFVYYRDGMSAQADG--------EYAEAL--ENYEEALKLEEDPND-------------------   70 (172)
T ss_pred             HHHHHHcccccHhhhHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHHhhccch-------------------
Confidence            344555555554  44566788888 7888        667777  666666655553211                   


Q ss_pred             hhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          95 LMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        95 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                            ....+..+|.++...|++++|+.+|.+++.++|+++..+.++|.+|..+
T Consensus        71 ------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  119 (172)
T PRK02603         71 ------RSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKR  119 (172)
T ss_pred             ------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence                  1568899999999999999999999999999999999999999998754

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.59  E-value=9e-07  Score=72.38  Aligned_cols=126  Identities=10%  Similarity=-0.009  Sum_probs=94.4

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .|...+...+++++|++.++.+++..|+...++..+|.+ ...++.        ..+.    ....+...+....+.--.
T Consensus        36 ~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~--------~~~~----lv~~l~~~~~~~~~~~ve  103 (906)
T PRK14720         36 DLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPL--------NDSN----LLNLIDSFSQNLKWAIVE  103 (906)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcch--------hhhh----hhhhhhhcccccchhHHH
Confidence            367788899999999999999999999999999999888 777732        2222    114444444443331101


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                      .+...+...   ++.      -.+++.+|.+|-+.|++++|+..|++++++||+|+.+..|.|-.|.+
T Consensus       104 ~~~~~i~~~---~~~------k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae  162 (906)
T PRK14720        104 HICDKILLY---GEN------KLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE  162 (906)
T ss_pred             HHHHHHHhh---hhh------hHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence            233333332   222      56899999999999999999999999999999999999999988764

>PRK11906 transcriptional regulator; Provisional

Probab=98.58  E-value=1.1e-06  Score=66.58  Aligned_cols=112  Identities=6%  Similarity=0.026  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHhh---ccCCCcHHHHHHHHHH-Hhh--hhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCC-------
Q psy3020          13 YKESISTYEEGL---KLDPNNEQMKEAIKDV-RNQ--EMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD-------   79 (150)
Q Consensus        13 ~~~A~~~~~~aL---~~~p~~~~a~~~l~~~-~~~--g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~-------   79 (150)
                      .+.|+..|.+|+   .+||+++.++-.++.+ ...  ..+- .......++.  ....+++.++|.+..++.-       
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~-~~~~~~~~a~--~~A~rAveld~~Da~a~~~~g~~~~~  350 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKS-ELELAAQKAL--ELLDYVSDITTVDGKILAIMGLITGL  350 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCC-CchHHHHHHH--HHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence            357899999999   9999999999999998 332  1111 1222444455  5566677777766432100       


Q ss_pred             -----hHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q psy3020          80 -----PSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDG  133 (150)
Q Consensus        80 -----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p  133 (150)
                           .....+-+.+.-+|..      +.+|...|.+++..|+.++|++..++|++++|
T Consensus       351 ~~~~~~a~~~f~rA~~L~Pn~------A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP  403 (458)
T PRK11906        351 SGQAKVSHILFEQAKIHSTDI------ASLYYYRALVHFHNEKIEEARICIDKSLQLEP  403 (458)
T ss_pred             hcchhhHHHHHHHHhhcCCcc------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccCc
Confidence                 0000111112233333      55555555555555555555555555555555

>KOG1173|consensus

Probab=98.57  E-value=2.1e-07  Score=71.43  Aligned_cols=131  Identities=11%  Similarity=0.071  Sum_probs=87.9

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhh----ccCCCCCCC-
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQL----QLDPRTKPF-   76 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l----~~~~~~~~~-   76 (150)
                      +|.-|..+++++-|-+.|.+|+.+.|+++-+...+|-+ +..+.+        .+|.  .-+..++    ...++...| 
T Consensus       386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y--------~~A~--~~f~~~l~~ik~~~~e~~~w~  455 (611)
T KOG1173|consen  386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEY--------PEAL--KYFQKALEVIKSVLNEKIFWE  455 (611)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhh--------HHHH--HHHHHHHHHhhhccccccchh
Confidence            78889999999999999999999999999999999998 877744        3443  3333333    112221111 


Q ss_pred             --CCC-hHHHHHHHHHhcCcchhhh-----HHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHH
Q psy3020          77 --LSD-PSYVQMIKEIQKDPSLMTL-----EAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRS  143 (150)
Q Consensus        77 --~~~-~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a  143 (150)
                        ... +...+.++.........+.     ++.+.++...|-++..+|+++.|+++|.++|.++|++...---++
T Consensus       456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~  530 (611)
T KOG1173|consen  456 PTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK  530 (611)
T ss_pred             HHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence              000 1222222221111111111     122899999999999999999999999999999999965544333

>KOG4234|consensus

Probab=98.57  E-value=8.9e-07  Score=60.37  Aligned_cols=97  Identities=19%  Similarity=0.270  Sum_probs=75.2

Q ss_pred             hHHHHhhCCHHHHHHHHHHhhccCCCcHH-----HHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC
Q psy3020           4 YSCLSYLGRYKESISTYEEGLKLDPNNEQ-----MKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL   77 (150)
Q Consensus         4 g~~~~~~~~~~~A~~~~~~aL~~~p~~~~-----a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~   77 (150)
                      |.-++..|.|++|..-|..||.+-|.-+.     .+...+.+ ..++        .-+.++  .++-+++.++|.+    
T Consensus       102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~--------k~e~aI--~dcsKaiel~pty----  167 (271)
T KOG4234|consen  102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLR--------KWESAI--EDCSKAIELNPTY----  167 (271)
T ss_pred             HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhh--------hHHHHH--HHHHhhHhcCchh----
Confidence            67789999999999999999999997654     23344545 5555        445666  7787888888853    


Q ss_pred             CChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcch
Q psy3020          78 SDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHIL  138 (150)
Q Consensus        78 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~  138 (150)
                                              ..++..++.+|-+..+|++|++.|.+.++++|....+
T Consensus       168 ------------------------~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ea  204 (271)
T KOG4234|consen  168 ------------------------EKALERRAEAYEKMEKYEEALEDYKKILESDPSRREA  204 (271)
T ss_pred             ------------------------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence                                    4455566777888899999999999999999987644

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.57  E-value=1.6e-07  Score=70.95  Aligned_cols=49  Identities=14%  Similarity=0.210  Sum_probs=46.1

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcc---hhhcHHHHHHhcC
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHI---LFSNRSAAFAKAI  150 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~n~a~~~~~~~  150 (150)
                      +.+|.++|.+++..|+|++|+.+|+++|+++|+++.   +|+|+|.||..+.
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LG  126 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYRE  126 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999985   4999999998763

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.55  E-value=7.6e-08  Score=47.06  Aligned_cols=29  Identities=34%  Similarity=0.634  Sum_probs=26.7

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCc
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNN   30 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~   30 (150)
                      .+|.+|..+|++++|+.+|++||+++|+|
T Consensus         6 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    6 NLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            58999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.53  E-value=2e-07  Score=70.40  Aligned_cols=88  Identities=20%  Similarity=0.309  Sum_probs=58.6

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHH---HHHHHHH-HhhhhccCCCCCchhhhhC-ChHHHHhhccCCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQM---KEAIKDV-RNQEMNDMNRGDPFANLFS-DPNIFVQLQLDPRTKPF   76 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a---~~~l~~~-~~~g~~~~~~~~~~~~a~~-~~~~~~~l~~~~~~~~~   76 (150)
                      ++|.+|+..|+|++|+.+|++||+++|++.++   |..+|-+ ..+|+.+ +|..++.+|+. +......+..+|+...+
T Consensus        80 NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~d-EAla~LrrALelsn~~f~~i~~DpdL~pl  158 (453)
T PLN03098         80 NLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGK-KAADCLRTALRDYNLKFSTILNDPDLAPF  158 (453)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhcchhHHHHHhCcchhhh
Confidence            68999999999999999999999999999965   9999999 8889544 33333444441 11122233444444334


Q ss_pred             CCChHHHHHHHHHh
Q psy3020          77 LSDPSYVQMIKEIQ   90 (150)
Q Consensus        77 ~~~~~~~~~~~~l~   90 (150)
                      .+.+.+...+....
T Consensus       159 R~~pef~eLlee~r  172 (453)
T PLN03098        159 RASPEFKELQEEAR  172 (453)
T ss_pred             cccHHHHHHHHHHH
Confidence            44445555555443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.52  E-value=2.9e-06  Score=63.99  Aligned_cols=105  Identities=18%  Similarity=0.219  Sum_probs=80.5

Q ss_pred             hHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHH
Q psy3020           4 YSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSY   82 (150)
Q Consensus         4 g~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~   82 (150)
                      -..+...++++.|++.|++..+.+|+   +...++.+ ..+++        -.+|+  .-+.+.+...|.+         
T Consensus       176 l~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~--------E~~AI--~ll~~aL~~~p~d---------  233 (395)
T PF09295_consen  176 LKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNE--------EVEAI--RLLNEALKENPQD---------  233 (395)
T ss_pred             HHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCc--------HHHHH--HHHHHHHHhCCCC---------
Confidence            34556678999999999999999987   34446776 55552        23444  4555555555533         


Q ss_pred             HHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          83 VQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        83 ~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                                         ...+...+..+..+++++.|+++.++++.+.|++-..|+.+|.||+++
T Consensus       234 -------------------~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~  281 (395)
T PF09295_consen  234 -------------------SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQL  281 (395)
T ss_pred             -------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc
Confidence                               566777888899999999999999999999999999999999999875

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.50  E-value=2e-06  Score=59.37  Aligned_cols=135  Identities=14%  Similarity=0.051  Sum_probs=85.8

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcH---HHHHHHHHH-Hhhhhcc---CCCCCchhhhhCChHHHHhhccCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNE---QMKEAIKDV-RNQEMND---MNRGDPFANLFSDPNIFVQLQLDPRTK   74 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~---~a~~~l~~~-~~~g~~~---~~~~~~~~~a~~~~~~~~~l~~~~~~~   74 (150)
                      .+|.+++..|+|++|+..|++.++..|+++   +++..+|.+ ..+....   ..-.....+|+  ..+...+..-|++.
T Consensus        47 ~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~--~~~~~li~~yP~S~  124 (203)
T PF13525_consen   47 MLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAI--EEFEELIKRYPNSE  124 (203)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHH--HHHHHHHHH-TTST
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHH--HHHHHHHHHCcCch
Confidence            588999999999999999999999999865   466666666 3332110   00001345566  67777777788765


Q ss_pred             CCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCc---chhhcHHHHHHhc
Q psy3020          75 PFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNH---ILFSNRSAAFAKA  149 (150)
Q Consensus        75 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~n~a~~~~~~  149 (150)
                      -.-   .....+..+....        ..--...|..+++.|.|..|+.-|+..++..|+.+   .++..++.+|.++
T Consensus       125 y~~---~A~~~l~~l~~~l--------a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l  191 (203)
T PF13525_consen  125 YAE---EAKKRLAELRNRL--------AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKL  191 (203)
T ss_dssp             THH---HHHHHHHHHHHHH--------HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT
T ss_pred             HHH---HHHHHHHHHHHHH--------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence            422   1222222221111        45556689999999999999999999999999975   4455566666554

>KOG0543|consensus

Probab=98.50  E-value=1.8e-06  Score=64.11  Aligned_cols=67  Identities=24%  Similarity=0.302  Sum_probs=61.7

Q ss_pred             ChhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC
Q psy3020           1 MTTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL   77 (150)
Q Consensus         1 ~~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~   77 (150)
                      ++++.||.++++|.+|+..++++|.++|+|.-+++..|.+ ..+|        ++..|.  .++.+++.+.|+++.+.
T Consensus       261 lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~--------e~~~A~--~df~ka~k~~P~Nka~~  328 (397)
T KOG0543|consen  261 LNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALG--------EYDLAR--DDFQKALKLEPSNKAAR  328 (397)
T ss_pred             hHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhc--------cHHHHH--HHHHHHHHhCCCcHHHH
Confidence            4799999999999999999999999999999999999999 9999        777888  99999999999986643

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.49  E-value=1e-06  Score=65.84  Aligned_cols=67  Identities=27%  Similarity=0.364  Sum_probs=57.9

Q ss_pred             chhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q psy3020          53 PFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLD  132 (150)
Q Consensus        53 ~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~  132 (150)
                      ++..|+  ..+.+++.++|++                            +.+|..+|.++...|++++|+..+.++++++
T Consensus        17 ~~~~Ai--~~~~~Al~~~P~~----------------------------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~   66 (356)
T PLN03088         17 DFALAV--DLYTQAIDLDPNN----------------------------AELYADRAQANIKLGNFTEAVADANKAIELD   66 (356)
T ss_pred             CHHHHH--HHHHHHHHhCCCC----------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            556666  6666666666653                            6788999999999999999999999999999


Q ss_pred             CCCcchhhcHHHHHHhc
Q psy3020         133 GTNHILFSNRSAAFAKA  149 (150)
Q Consensus       133 p~~~~~~~n~a~~~~~~  149 (150)
                      |+++.+|+++|.+|+.+
T Consensus        67 P~~~~a~~~lg~~~~~l   83 (356)
T PLN03088         67 PSLAKAYLRKGTACMKL   83 (356)
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            99999999999999875

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.48  E-value=2.8e-06  Score=61.77  Aligned_cols=48  Identities=23%  Similarity=0.196  Sum_probs=41.8

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      +..+..++.+.+.+|+|++|.+.+.++++.+|+++....|++.|..-+
T Consensus       201 ~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~  248 (290)
T PF04733_consen  201 PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHL  248 (290)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHh
Confidence            677888999999999999999999999999999999999999886543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1127|consensus

Probab=98.47  E-value=1.4e-06  Score=70.99  Aligned_cols=129  Identities=13%  Similarity=0.105  Sum_probs=79.8

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCC----------
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDP----------   71 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~----------   71 (150)
                      ||..|....+...|..+|++|.++||+++++.-+.++. .....+        ..++  ..+.++-..+|          
T Consensus       498 LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~w--------e~a~--~I~l~~~qka~a~~~k~nW~~  567 (1238)
T KOG1127|consen  498 LGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTW--------EEAF--EICLRAAQKAPAFACKENWVQ  567 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccH--------HHHH--HHHHHHhhhchHHHHHhhhhh
Confidence            56666666677778888888888888888777777776 444422        2222  11111111111          


Q ss_pred             ---CCCCCCCChHHHHHH-HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHH
Q psy3020          72 ---RTKPFLSDPSYVQMI-KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFA  147 (150)
Q Consensus        72 ---~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~  147 (150)
                         -+.+..+-.....-+ -.+..+|.+      ...|..+|.+|...|+|+-|++.|++|..++|.+.-..|-.|....
T Consensus       568 rG~yyLea~n~h~aV~~fQsALR~dPkD------~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ec  641 (1238)
T KOG1127|consen  568 RGPYYLEAHNLHGAVCEFQSALRTDPKD------YNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMEC  641 (1238)
T ss_pred             ccccccCccchhhHHHHHHHHhcCCchh------HHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHH
Confidence               111111111111111 225566655      8999999999999999999999999999999998877776666543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.46  E-value=2e-07  Score=45.40  Aligned_cols=29  Identities=41%  Similarity=0.647  Sum_probs=26.7

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCc
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNN   30 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~   30 (150)
                      .+|.+++.+|++++|+++|+++++++|+|
T Consensus         6 ~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    6 YLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            58999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1174|consensus

Probab=98.44  E-value=4.1e-06  Score=62.74  Aligned_cols=128  Identities=16%  Similarity=0.193  Sum_probs=77.5

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCC-----
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKP-----   75 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~-----   75 (150)
                      .-|.++.+.++.++|+=+|..|..+-|..-+.+.+|..+ ...|.        +++|+  -.....++.-|....     
T Consensus       339 lKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~--------~kEA~--~~An~~~~~~~~sA~~LtL~  408 (564)
T KOG1174|consen  339 LKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKR--------FKEAN--ALANWTIRLFQNSARSLTLF  408 (564)
T ss_pred             hccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhch--------HHHHH--HHHHHHHHHhhcchhhhhhh
Confidence            347777888888888888888888888888888777777 66663        33333  222222222222111     


Q ss_pred             ----CCCChHHHHHHHH-----HhcCcchhhh---------------------------HHHhHHHHHHHHHHHHhcCHH
Q psy3020          76 ----FLSDPSYVQMIKE-----IQKDPSLMTL---------------------------EAKISLLKDKGNAALQANNFK  119 (150)
Q Consensus        76 ----~~~~~~~~~~~~~-----l~~~~~~~~~---------------------------~~~~~~~~~~g~~~~~~~~~~  119 (150)
                          .+.++....+..+     +...|.....                           ......+..+|.++...+.+.
T Consensus       409 g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q  488 (564)
T KOG1174|consen  409 GTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQ  488 (564)
T ss_pred             cceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHH
Confidence                0111111111111     2222222222                           022566778999999999999


Q ss_pred             HHHHHHHHHHhhcCCCcchh
Q psy3020         120 EAIEAYSEAIKLDGTNHILF  139 (150)
Q Consensus       120 ~A~~~~~~al~~~p~~~~~~  139 (150)
                      +|.++|..|+.+||++....
T Consensus       489 ~am~~y~~ALr~dP~~~~sl  508 (564)
T KOG1174|consen  489 KAMEYYYKALRQDPKSKRTL  508 (564)
T ss_pred             HHHHHHHHHHhcCccchHHH
Confidence            99999999999999987654

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=4.4e-06  Score=59.97  Aligned_cols=100  Identities=15%  Similarity=0.073  Sum_probs=83.6

Q ss_pred             CHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHh
Q psy3020          12 RYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQ   90 (150)
Q Consensus        12 ~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~   90 (150)
                      ..+.-+.-.+.-|+.||+|++-|..||.+ ...|        .+..|.  .-|.+++++.|++                 
T Consensus       137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~--------~~~~A~--~AY~~A~rL~g~n-----------------  189 (287)
T COG4235         137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALG--------RASDAL--LAYRNALRLAGDN-----------------  189 (287)
T ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc--------chhHHH--HHHHHHHHhCCCC-----------------
Confidence            45667788899999999999999999999 8989        666777  7888888888865                 


Q ss_pred             cCcchhhhHHHhHHHHHHHHHHHHh---cCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          91 KDPSLMTLEAKISLLKDKGNAALQA---NNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                                 ++.+..+|.+++.+   ....++...+++++.+||+|+.+.+.+|..++++
T Consensus       190 -----------~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~  240 (287)
T COG4235         190 -----------PEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQ  240 (287)
T ss_pred             -----------HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc
Confidence                       55666677777643   4456999999999999999999999999999875

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.41  E-value=4.2e-06  Score=65.39  Aligned_cols=62  Identities=10%  Similarity=-0.007  Sum_probs=53.2

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCC
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKP   75 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~   75 (150)
                      +|..+...|++++|...|++|+.++| +..+|..+|.+ ...|        ...+|.  ..+.+++.++|.++.
T Consensus       426 la~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G--------~~~eA~--~~~~~A~~L~P~~pt  488 (517)
T PRK10153        426 LAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKG--------DNRLAA--DAYSTAFNLRPGENT  488 (517)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHhcCCCCch
Confidence            56667778999999999999999999 47899999999 8888        667888  888899999997654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.41  E-value=1.3e-06  Score=50.11  Aligned_cols=43  Identities=19%  Similarity=0.243  Sum_probs=38.5

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHH
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSA  144 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~  144 (150)
                      +..|..+|.+++..|++++|++.|+++++..|+++....-++.
T Consensus        29 ~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~   71 (73)
T PF13371_consen   29 PELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM   71 (73)
T ss_pred             chhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence            7789999999999999999999999999999999887665543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.41  E-value=4.5e-06  Score=51.93  Aligned_cols=83  Identities=10%  Similarity=0.036  Sum_probs=63.5

Q ss_pred             HHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHH
Q psy3020          32 QMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGN  110 (150)
Q Consensus        32 ~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~  110 (150)
                      ..+..++.. ...|        ++.++.  ..+...+...|++..                   .      +.++..+|.
T Consensus         3 ~~~~~~~~~~~~~~--------~~~~A~--~~~~~~~~~~~~~~~-------------------~------~~~~~~l~~   47 (119)
T TIGR02795         3 EAYYDAALLVLKAG--------DYADAI--QAFQAFLKKYPKSTY-------------------A------PNAHYWLGE   47 (119)
T ss_pred             HHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHHCCCccc-------------------c------HHHHHHHHH
Confidence            455666666 6666        566666  666666666664321                   0      567888999


Q ss_pred             HHHHhcCHHHHHHHHHHHHhhcCCC---cchhhcHHHHHHhc
Q psy3020         111 AALQANNFKEAIEAYSEAIKLDGTN---HILFSNRSAAFAKA  149 (150)
Q Consensus       111 ~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~n~a~~~~~~  149 (150)
                      ++++.|++++|+..|.+++..+|++   +.+++++|.++.++
T Consensus        48 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~   89 (119)
T TIGR02795        48 AYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQEL   89 (119)
T ss_pred             HHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHh
Confidence            9999999999999999999999986   56799999998765

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=98.40  E-value=9.1e-07  Score=43.07  Aligned_cols=33  Identities=24%  Similarity=0.410  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCC
Q psy3020         103 SLLKDKGNAALQANNFKEAIEAYSEAIKLDGTN  135 (150)
Q Consensus       103 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~  135 (150)
                      ..|..+|.++..+|++++|+++|+++++++|++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            578999999999999999999999999999964

...

>PRK11906 transcriptional regulator; Provisional

Probab=98.39  E-value=4e-06  Score=63.61  Aligned_cols=106  Identities=8%  Similarity=-0.002  Sum_probs=70.4

Q ss_pred             CHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC----------CC-
Q psy3020          12 RYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL----------SD-   79 (150)
Q Consensus        12 ~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~----------~~-   79 (150)
                      ...+|.+.-++|+++||+|+.++..+|.+ ...+        ++..++  ..+.+++.++|+....+          .+ 
T Consensus       319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~--------~~~~a~--~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~  388 (458)
T PRK11906        319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSG--------QAKVSH--ILFEQAKIHSTDIASLYYYRALVHFHNEKI  388 (458)
T ss_pred             HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc--------chhhHH--HHHHHHhhcCCccHHHHHHHHHHHHHcCCH
Confidence            45579999999999999999999999998 7777        556677  78889999999987632          11 


Q ss_pred             hHHHHHHHH-HhcCcchhhhHHHhHHHHHHHHH-HHHhcCHHHHHHHHHHHHhhcC
Q psy3020          80 PSYVQMIKE-IQKDPSLMTLEAKISLLKDKGNA-ALQANNFKEAIEAYSEAIKLDG  133 (150)
Q Consensus        80 ~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~A~~~~~~al~~~p  133 (150)
                      ......+.. +..+|..      ..+-..+-++ .|-....++|++.|-+-.+-..
T Consensus       389 ~~a~~~i~~alrLsP~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (458)
T PRK11906        389 EEARICIDKSLQLEPRR------RKAVVIKECVDMYVPNPLKNNIKLYYKETESES  438 (458)
T ss_pred             HHHHHHHHHHhccCchh------hHHHHHHHHHHHHcCCchhhhHHHHhhcccccc
Confidence            011112222 3344422      2333333333 5566778899998877555433

>KOG4648|consensus

Probab=98.39  E-value=3.1e-07  Score=67.27  Aligned_cols=48  Identities=33%  Similarity=0.538  Sum_probs=44.8

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      ..-+...|+.++++|+|++||.||++++..+|.|+..+.|||.+|+++
T Consensus        97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~  144 (536)
T KOG4648|consen   97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQ  144 (536)
T ss_pred             hHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHH
Confidence            444788999999999999999999999999999999999999999875

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.39  E-value=1.5e-05  Score=50.48  Aligned_cols=107  Identities=20%  Similarity=0.106  Sum_probs=78.6

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCc---HHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNN---EQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~---~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~   77 (150)
                      .+|.++-..|+.++|+..|++++...++.   ..++..++.. ..+|        .+.+++  ..+.+.+...|+...  
T Consensus         6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG--------~~deA~--~~L~~~~~~~p~~~~--   73 (120)
T PF12688_consen    6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLG--------RYDEAL--ALLEEALEEFPDDEL--   73 (120)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHHCCCccc--
Confidence            46889999999999999999999986654   4578889988 9999        666776  556556655554321  


Q ss_pred             CChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHH
Q psy3020          78 SDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFA  147 (150)
Q Consensus        78 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~  147 (150)
                                       .      ......++.+++..|++++|++.+-.++.-...    .|.+++.+.
T Consensus        74 -----------------~------~~l~~f~Al~L~~~gr~~eAl~~~l~~la~~~~----~y~ra~~~y  116 (120)
T PF12688_consen   74 -----------------N------AALRVFLALALYNLGRPKEALEWLLEALAETLP----RYRRAIRFY  116 (120)
T ss_pred             -----------------c------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence                             0      233445667889999999999999988863332    566666543

>KOG1129|consensus

Probab=98.37  E-value=1.7e-06  Score=63.13  Aligned_cols=135  Identities=14%  Similarity=0.138  Sum_probs=84.7

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC-CC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL-SD   79 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~-~~   79 (150)
                      .+|.||..+|-+.+|-..++.+|+..|- ++.+.-|+.+ ....        +-..|+  ..+...+...|.+...+ .+
T Consensus       228 Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~rid--------QP~~AL--~~~~~gld~fP~~VT~l~g~  296 (478)
T KOG1129|consen  228 QMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRID--------QPERAL--LVIGEGLDSFPFDVTYLLGQ  296 (478)
T ss_pred             HHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhc--------cHHHHH--HHHhhhhhcCCchhhhhhhh
Confidence            4899999999999999999999998875 4455556666 5555        445566  66777777778665432 11


Q ss_pred             hHHHHHHHHHhcCcchhhh-----HHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHH
Q psy3020          80 PSYVQMIKEIQKDPSLMTL-----EAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFA  147 (150)
Q Consensus        80 ~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~  147 (150)
                      ....+.++..+........     +.+.++..-.|..++.-++.+-|+++|++.+++--.++.++.|+|.|.+
T Consensus       297 ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~  369 (478)
T KOG1129|consen  297 ARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCL  369 (478)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHH
Confidence            1111111111100000000     0113444445556677788888888888888888888888888887765

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.36  E-value=1.4e-05  Score=51.77  Aligned_cols=101  Identities=12%  Similarity=0.092  Sum_probs=81.3

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHH---HHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQ---MKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~---a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~   77 (150)
                      .-|...+..|+|++|++.|+....--|....   +.+.++.+ ...+        ++..|+  ..+.+-++++|+++.. 
T Consensus        15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~--------~y~~A~--a~~~rFirLhP~hp~v-   83 (142)
T PF13512_consen   15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQG--------DYEEAI--AAYDRFIRLHPTHPNV-   83 (142)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHcc--------CHHHHH--HHHHHHHHhCCCCCCc-
Confidence            3467788999999999999999999997664   56788888 8888        677888  8888889999988763 


Q ss_pred             CChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcC---------------HHHHHHHHHHHHhhcCCCcc
Q psy3020          78 SDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANN---------------FKEAIEAYSEAIKLDGTNHI  137 (150)
Q Consensus        78 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------------~~~A~~~~~~al~~~p~~~~  137 (150)
                                              ..++..+|.+.+.+..               ...|...|++.|...|++.-
T Consensus        84 ------------------------dYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y  134 (142)
T PF13512_consen   84 ------------------------DYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY  134 (142)
T ss_pred             ------------------------cHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence                                    4455666666665554               78999999999999998763

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.35  E-value=2e-05  Score=59.85  Aligned_cols=110  Identities=15%  Similarity=0.083  Sum_probs=88.7

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      ..|..+.+.++.++|++.+++++.++|+.......++.. ...|        ...+++  ..+.+.+..+|+++.+.   
T Consensus       345 ~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g--------~~~eai--~~L~~~~~~~p~dp~~w---  411 (484)
T COG4783         345 LAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGG--------KPQEAI--RILNRYLFNDPEDPNGW---  411 (484)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcC--------ChHHHH--HHHHHHhhcCCCCchHH---
Confidence            357889999999999999999999999999999999999 8888        556777  78888888899887743   


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLD  132 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~  132 (150)
                      .+..  +........      ..+....+..++..|++++|+..+..+.+..
T Consensus       412 ~~LA--qay~~~g~~------~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         412 DLLA--QAYAELGNR------AEALLARAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             HHHH--HHHHHhCch------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            2222  222222211      7788888999999999999999999998877

>PRK15331 chaperone protein SicA; Provisional

Probab=98.34  E-value=6.7e-06  Score=54.43  Aligned_cols=49  Identities=10%  Similarity=-0.029  Sum_probs=46.3

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhcC
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKAI  150 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~~  150 (150)
                      +.-|..+|-++..+++|++|+..|..|..+++++|...+..|.||+.+.
T Consensus        71 ~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~  119 (165)
T PRK15331         71 PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR  119 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence            6779999999999999999999999999999999999999999999763

>KOG1840|consensus

Probab=98.34  E-value=6.7e-06  Score=63.79  Aligned_cols=143  Identities=18%  Similarity=0.248  Sum_probs=84.3

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhcc--------CCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhh-c-cC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKL--------DPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQL-Q-LD   70 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~--------~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l-~-~~   70 (150)
                      ++|..|..+++|++|+..|++||.+        +|.-+.++..|+.+ ...|.+. ++...++.|+   .+.+.+ . ..
T Consensus       246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~-EA~~~~e~Al---~I~~~~~~~~~  321 (508)
T KOG1840|consen  246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFA-EAEEYCERAL---EIYEKLLGASH  321 (508)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChH-HHHHHHHHHH---HHHHHhhccCh
Confidence            4899999999999999999999975        44555677888888 8888443 3332333333   221111 1 11


Q ss_pred             CCCCCCC----------CC----hHHHHH-HHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC-
Q psy3020          71 PRTKPFL----------SD----PSYVQM-IKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT-  134 (150)
Q Consensus        71 ~~~~~~~----------~~----~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-  134 (150)
                      |+....+          ++    ..+++. +.-+.+.+.... ..-+....++|..+++.|+|++|.+.|++||++... 
T Consensus       322 ~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~-~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~  400 (508)
T KOG1840|consen  322 PEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN-VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILREL  400 (508)
T ss_pred             HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc-hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc
Confidence            1111000          00    011111 111111111000 011678889999999999999999999999998732 


Q ss_pred             -------CcchhhcHHHHHHhc
Q psy3020         135 -------NHILFSNRSAAFAKA  149 (150)
Q Consensus       135 -------~~~~~~n~a~~~~~~  149 (150)
                             ......++|..|.++
T Consensus       401 ~~~~~~~~~~~l~~la~~~~~~  422 (508)
T KOG1840|consen  401 LGKKDYGVGKPLNQLAEAYEEL  422 (508)
T ss_pred             ccCcChhhhHHHHHHHHHHHHh
Confidence                   244566677776553

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.33  E-value=7.6e-06  Score=47.67  Aligned_cols=48  Identities=25%  Similarity=0.352  Sum_probs=43.7

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      ...+..+|.++...+++++|++.|++++...|.+...++.+|.++..+
T Consensus        34 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189          34 ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            467888999999999999999999999999999999999999988754

>KOG1174|consensus

Probab=98.33  E-value=8.9e-06  Score=61.00  Aligned_cols=132  Identities=15%  Similarity=0.191  Sum_probs=91.0

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCC-C---
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKP-F---   76 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~-~---   76 (150)
                      .+|.|++..|++++|+.-|+++..+||.+.++.--.|-+ ...|+.+     +.....     ...+..+..+.. |   
T Consensus       237 ~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e-----~~~~L~-----~~Lf~~~~~ta~~wfV~  306 (564)
T KOG1174|consen  237 ALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCE-----QDSALM-----DYLFAKVKYTASHWFVH  306 (564)
T ss_pred             HHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHh-----hHHHHH-----HHHHhhhhcchhhhhhh
Confidence            589999999999999999999999999999876655555 4555332     222222     112222221111 1   


Q ss_pred             ----CCChHHHHHH----HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          77 ----LSDPSYVQMI----KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        77 ----~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                          .....+..++    ..++.++..      ..++..+|+.+...++.++|+-.|+.|..+-|-.-..|--+-.||+.
T Consensus       307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~------~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA  380 (564)
T KOG1174|consen  307 AQLLYDEKKFERALNFVEKCIDSEPRN------HEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLA  380 (564)
T ss_pred             hhhhhhhhhHHHHHHHHHHHhccCccc------chHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHh
Confidence                1112333333    224445544      88999999999999999999999999999999888888777777764


Q ss_pred             c
Q psy3020         149 A  149 (150)
Q Consensus       149 ~  149 (150)
                      .
T Consensus       381 ~  381 (564)
T KOG1174|consen  381 Q  381 (564)
T ss_pred             h
Confidence            3

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.33  E-value=1.2e-05  Score=57.16  Aligned_cols=104  Identities=16%  Similarity=0.083  Sum_probs=85.3

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcH---HHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNE---QMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~---~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~   77 (150)
                      ..|.-++..|+|.+|...|..-++.-|+..   .+++=||.+ +.+|        ++..|.  ..+....+..|++    
T Consensus       146 ~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg--------~y~~Aa--~~f~~~~k~~P~s----  211 (262)
T COG1729         146 NAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQG--------DYEDAA--YIFARVVKDYPKS----  211 (262)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcc--------cchHHH--HHHHHHHHhCCCC----
Confidence            356778899999999999999999999866   578889999 9999        555555  5555555555543    


Q ss_pred             CChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhh
Q psy3020          78 SDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFS  140 (150)
Q Consensus        78 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  140 (150)
                                     |..      ++++..+|.+...+|+.++|...|.+.++.-|+.+.+-.
T Consensus       212 ---------------~KA------pdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~  253 (262)
T COG1729         212 ---------------PKA------PDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKL  253 (262)
T ss_pred             ---------------CCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence                           322      899999999999999999999999999999999876644

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.30  E-value=1.4e-05  Score=56.80  Aligned_cols=99  Identities=13%  Similarity=0.080  Sum_probs=77.6

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHH---HHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCC
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMK---EAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS   78 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~---~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~   78 (150)
                      .|..++..|+|++|++.|++++...|+.+.+.   ..+|.+ ..++        ++..|.  ..+.+.++..|+++..  
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~--------~y~~A~--~~~e~fi~~~P~~~~~--  105 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA--------DLPLAQ--AAIDRFIRLNPTHPNI--  105 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC--------CHHHHH--HHHHHHHHhCcCCCch--
Confidence            46778889999999999999999999988765   677888 8888        777888  7888888889987652  


Q ss_pred             ChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhc------------------CHHHHHHHHHHHHhhcCCCc
Q psy3020          79 DPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQAN------------------NFKEAIEAYSEAIKLDGTNH  136 (150)
Q Consensus        79 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~------------------~~~~A~~~~~~al~~~p~~~  136 (150)
                                             +.++..+|.+.+..+                  ...+|+..|++.++..|++.
T Consensus       106 -----------------------~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~  158 (243)
T PRK10866        106 -----------------------DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ  158 (243)
T ss_pred             -----------------------HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence                                   455666665543322                  23579999999999999874

>TIGR00540 hemY_coli hemY protein

Probab=98.30  E-value=1.7e-05  Score=60.35  Aligned_cols=115  Identities=8%  Similarity=-0.002  Sum_probs=70.5

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC-----
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF-----   76 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~-----   76 (150)
                      -|......|+++.|.+...++.+..|+....+...+.+ ..+|        ++..+.  ..+.+.....|+....     
T Consensus        90 ~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g--------~~~~A~--~~l~~a~~~~p~~~l~~~~~~  159 (409)
T TIGR00540        90 EALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRG--------DEARAN--QHLEEAAELAGNDNILVEIAR  159 (409)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCC--------CHHHHH--HHHHHHHHhCCcCchHHHHHH
Confidence            46777889999999999999999999988888888888 8888        455555  4555555555554310     


Q ss_pred             ------CCCh-HHHHHHHH-HhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q psy3020          77 ------LSDP-SYVQMIKE-IQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDG  133 (150)
Q Consensus        77 ------~~~~-~~~~~~~~-l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p  133 (150)
                            ..+. .....+.. ++..|..      +.++..++.++...|++++|++.+.+.++..+
T Consensus       160 a~l~l~~~~~~~Al~~l~~l~~~~P~~------~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~  218 (409)
T TIGR00540       160 TRILLAQNELHAARHGVDKLLEMAPRH------KEVLKLAEEAYIRSGAWQALDDIIDNMAKAGL  218 (409)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC
Confidence                  0000 01111111 2233433      55566666666666666666666666665533

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.30  E-value=8.4e-06  Score=56.63  Aligned_cols=89  Identities=20%  Similarity=0.191  Sum_probs=60.7

Q ss_pred             chhhhhCChHHHHhhccCCCCCCCCC-ChHHHHHH-----------HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHH
Q psy3020          53 PFANLFSDPNIFVQLQLDPRTKPFLS-DPSYVQMI-----------KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKE  120 (150)
Q Consensus        53 ~~~~a~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~-----------~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  120 (150)
                      ++..|.  ..+.+++..||+....+- ...++..+           ..+..+|..      .+.+++.|..++.+|+|++
T Consensus        50 d~~~A~--~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~------GdVLNNYG~FLC~qg~~~e  121 (250)
T COG3063          50 DYAQAK--KNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNN------GDVLNNYGAFLCAQGRPEE  121 (250)
T ss_pred             CHHHHH--HHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCc------cchhhhhhHHHHhCCChHH
Confidence            677777  899999999998775320 00111111           113334433      7888888888888888888


Q ss_pred             HHHHHHHHHh--hcCCCcchhhcHHHHHHhc
Q psy3020         121 AIEAYSEAIK--LDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       121 A~~~~~~al~--~~p~~~~~~~n~a~~~~~~  149 (150)
                      |...|++|+.  .-|..+..|-|+|.|-+++
T Consensus       122 A~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~  152 (250)
T COG3063         122 AMQQFERALADPAYGEPSDTLENLGLCALKA  152 (250)
T ss_pred             HHHHHHHHHhCCCCCCcchhhhhhHHHHhhc
Confidence            8888888886  3444577888888887765

>KOG0376|consensus

Probab=98.28  E-value=9.7e-07  Score=66.78  Aligned_cols=104  Identities=17%  Similarity=0.215  Sum_probs=85.0

Q ss_pred             hHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHH
Q psy3020           4 YSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSY   82 (150)
Q Consensus         4 g~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~   82 (150)
                      +.-.+.-+.|+.|+..|.+||+++|+++..+...+.. ...+        .+..|+  .+..+++.++|..         
T Consensus        11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e--------~~~~Al--~Da~kaie~dP~~---------   71 (476)
T KOG0376|consen   11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVE--------SFGGAL--HDALKAIELDPTY---------   71 (476)
T ss_pred             HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeec--------hhhhHH--HHHHhhhhcCchh---------
Confidence            4556778999999999999999999999877766655 5556        666777  7777777777743         


Q ss_pred             HHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHH
Q psy3020          83 VQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAA  145 (150)
Q Consensus        83 ~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~  145 (150)
                                         ..+|..+|...+..+.+.+|+..|+....+.|+++.+..-...|
T Consensus        72 -------------------~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec  115 (476)
T KOG0376|consen   72 -------------------IKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDEC  115 (476)
T ss_pred             -------------------hheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHH
Confidence                               66788889999999999999999999999999998876655554

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.26  E-value=3.2e-06  Score=58.43  Aligned_cols=95  Identities=15%  Similarity=0.136  Sum_probs=79.1

Q ss_pred             hHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHH
Q psy3020           4 YSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSY   82 (150)
Q Consensus         4 g~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~   82 (150)
                      |..|-.+|-+.-|.-+|.++|.+.|+-++++.-+|.. -..|        ++..+.  ..+...+.+||..         
T Consensus        72 GvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~--------~fdaa~--eaFds~~ELDp~y---------  132 (297)
T COG4785          72 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG--------NFDAAY--EAFDSVLELDPTY---------  132 (297)
T ss_pred             cchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcc--------cchHHH--HHhhhHhccCCcc---------
Confidence            5667778888889999999999999999999999988 7778        566666  6667777888854         


Q ss_pred             HHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCc
Q psy3020          83 VQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNH  136 (150)
Q Consensus        83 ~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~  136 (150)
                                         --+..++|..++.-|+|.-|.+.+.+-.+-||++|
T Consensus       133 -------------------~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP  167 (297)
T COG4785         133 -------------------NYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP  167 (297)
T ss_pred             -------------------hHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence                               45667788888888999999999988888888887

>KOG1127|consensus

Probab=98.25  E-value=6.1e-06  Score=67.37  Aligned_cols=125  Identities=15%  Similarity=0.218  Sum_probs=95.6

Q ss_pred             CCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC--------CChH
Q psy3020          11 GRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL--------SDPS   81 (150)
Q Consensus        11 ~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~--------~~~~   81 (150)
                      ++...|+.+|-+++++||+.+.++..||.+ +..-        ++..|.  .=+.++..+||.+.+.-        ..+.
T Consensus       472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~--------Dm~RA~--kCf~KAFeLDatdaeaaaa~adtyae~~~  541 (1238)
T KOG1127|consen  472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSD--------DMKRAK--KCFDKAFELDATDAEAAAASADTYAEEST  541 (1238)
T ss_pred             hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH--------HHHHHH--HHHHHHhcCCchhhhhHHHHHHHhhcccc
Confidence            457889999999999999999999999999 7666        556666  67777788888766521        0011


Q ss_pred             ----HHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          82 ----YVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        82 ----~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                          +.-.++.-+++|..    .....|..+|..+.+.+++.+|+..|..|+..+|.+..+|.-+|.+|...
T Consensus       542 we~a~~I~l~~~qka~a~----~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~s  609 (1238)
T KOG1127|consen  542 WEEAFEICLRAAQKAPAF----ACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPES  609 (1238)
T ss_pred             HHHHHHHHHHHhhhchHH----HHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhc
Confidence                11122223333322    33667788999999999999999999999999999999999999999764

>KOG1128|consensus

Probab=98.24  E-value=7.1e-06  Score=64.94  Aligned_cols=100  Identities=14%  Similarity=0.115  Sum_probs=68.5

Q ss_pred             HHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHH
Q psy3020           5 SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYV   83 (150)
Q Consensus         5 ~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~   83 (150)
                      ......++|+++.++++.+++++|-..+.|+++|.+ ...+        ++..+.  ..+..++.++|++          
T Consensus       493 ~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqle--------k~q~av--~aF~rcvtL~Pd~----------  552 (777)
T KOG1128|consen  493 LLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLE--------KEQAAV--KAFHRCVTLEPDN----------  552 (777)
T ss_pred             cccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHh--------hhHHHH--HHHHHHhhcCCCc----------
Confidence            334456889999999999999999999999999888 7777        444444  5677788888876          


Q ss_pred             HHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcH
Q psy3020          84 QMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNR  142 (150)
Q Consensus        84 ~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~  142 (150)
                                        +.+|.++...+.+.++-.+|...+++|++-+-+++..|-|-
T Consensus       553 ------------------~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENy  593 (777)
T KOG1128|consen  553 ------------------AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENY  593 (777)
T ss_pred             ------------------hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeech
Confidence                              44555555555555555555555555555555555554443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.22  E-value=2e-06  Score=48.59  Aligned_cols=50  Identities=18%  Similarity=0.128  Sum_probs=40.1

Q ss_pred             HhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHH
Q psy3020          89 IQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSA  144 (150)
Q Consensus        89 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~  144 (150)
                      +...|..      ...+..++.++++.|++++|.+.+.+++..+|+++..+.-++.
T Consensus        18 l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen   18 LQRNPDN------PEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHTTTS------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             HHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            5566766      8888889999999999999999999999999988777665554

...

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.22  E-value=1.6e-05  Score=54.90  Aligned_cols=102  Identities=19%  Similarity=0.157  Sum_probs=74.0

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcH---HHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNE---QMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~---~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~   77 (150)
                      ..|..++..|+|.+|+..|++++...|+..   .+...++.+ ...|        ++..|.  ..+..-+...|++... 
T Consensus        10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~--------~y~~A~--~~~~~fi~~yP~~~~~-   78 (203)
T PF13525_consen   10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQG--------DYEEAI--AAYERFIKLYPNSPKA-   78 (203)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT---------HHHHH--HHHHHHHHH-TT-TTH-
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHHCCCCcch-
Confidence            468889999999999999999999988754   567888888 8888        667777  6777777777876431 


Q ss_pred             CChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHhhcCCCcch
Q psy3020          78 SDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQA-----------NNFKEAIEAYSEAIKLDGTNHIL  138 (150)
Q Consensus        78 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~-----------~~~~~A~~~~~~al~~~p~~~~~  138 (150)
                                              +.++..+|.+.+..           +...+|+..|+..+...|+++-+
T Consensus        79 ------------------------~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~  126 (203)
T PF13525_consen   79 ------------------------DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYA  126 (203)
T ss_dssp             ------------------------HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTH
T ss_pred             ------------------------hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHH
Confidence                                    45566666665443           44569999999999999998643

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.20  E-value=5.9e-05  Score=51.14  Aligned_cols=97  Identities=16%  Similarity=0.205  Sum_probs=75.5

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhc-cCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLK-LDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD   79 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~-~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~   79 (150)
                      -||.++.++|++.+|..+|++++. +--+++....+++.. ...+        ++..+.  +.+.+..+-+|....    
T Consensus        94 rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~--------~~A~a~--~tLe~l~e~~pa~r~----  159 (251)
T COG4700          94 RLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQ--------EFAAAQ--QTLEDLMEYNPAFRS----  159 (251)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhc--------cHHHHH--HHHHHHhhcCCccCC----
Confidence            478999999999999999999997 455788888999998 8888        556666  666666666654322    


Q ss_pred             hHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC
Q psy3020          80 PSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT  134 (150)
Q Consensus        80 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  134 (150)
                                            +......|..+...|++.+|...|+.++..-|+
T Consensus       160 ----------------------pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg  192 (251)
T COG4700         160 ----------------------PDGHLLFARTLAAQGKYADAESAFEVAISYYPG  192 (251)
T ss_pred             ----------------------CCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC
Confidence                                  555667777888888888888888888888875

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.19  E-value=1e-06  Score=43.12  Aligned_cols=26  Identities=23%  Similarity=0.425  Sum_probs=24.0

Q ss_pred             HHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         124 AYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       124 ~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      +|++||+++|+++.+|+|+|.+|...
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~   26 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQ   26 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHC
Confidence            48999999999999999999999865

>KOG0495|consensus

Probab=98.16  E-value=5.6e-05  Score=59.73  Aligned_cols=43  Identities=16%  Similarity=0.074  Sum_probs=36.3

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHH
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSA  144 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~  144 (150)
                      +-.+...|..++...+++.|.+.|.+|+.++|++-.+|.+.=.
T Consensus       817 phVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fyk  859 (913)
T KOG0495|consen  817 PHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYK  859 (913)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHH
Confidence            5556778999999999999999999999999998777665433

>KOG2003|consensus

Probab=98.15  E-value=1.5e-05  Score=60.60  Aligned_cols=47  Identities=17%  Similarity=0.132  Sum_probs=32.5

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                      +..+..+++++-...+..+||+.+.++..+-|++|..+..+|..|-+
T Consensus       558 ~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydq  604 (840)
T KOG2003|consen  558 AEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ  604 (840)
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc
Confidence            55666666676666777777777777777777777777777666644

>KOG1840|consensus

Probab=98.13  E-value=1.3e-05  Score=62.25  Aligned_cols=102  Identities=14%  Similarity=0.162  Sum_probs=77.0

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhcc--------CCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKL--------DPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPR   72 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~--------~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~   72 (150)
                      .+|..|...|+|+.|...|++|+++        +|.-......+|.+ ..++        .+.+|.  ..+.+++.+--.
T Consensus       204 ~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~--------k~~eAv--~ly~~AL~i~e~  273 (508)
T KOG1840|consen  204 NLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLG--------KYDEAV--NLYEEALTIREE  273 (508)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhc--------cHHHHH--HHHHHHHHHHHH
Confidence            4789999999999999999999999        77777777778888 8888        556665  555444422111


Q ss_pred             CCCCCCChHHHHHHHHHh-cCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC
Q psy3020          73 TKPFLSDPSYVQMIKEIQ-KDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT  134 (150)
Q Consensus        73 ~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  134 (150)
                      .               .. ..|..      +.++.+++..++..|+|.+|..++++|+++--.
T Consensus       274 ~---------------~G~~h~~v------a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~  315 (508)
T KOG1840|consen  274 V---------------FGEDHPAV------AATLNNLAVLYYKQGKFAEAEEYCERALEIYEK  315 (508)
T ss_pred             h---------------cCCCCHHH------HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence            0               11 12222      788999999999999999999999999987543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.12  E-value=6e-05  Score=49.18  Aligned_cols=107  Identities=12%  Similarity=0.035  Sum_probs=81.9

Q ss_pred             HhhCCHHHHHHHHHHhhccCCCcH---HHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHH
Q psy3020           8 SYLGRYKESISTYEEGLKLDPNNE---QMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYV   83 (150)
Q Consensus         8 ~~~~~~~~A~~~~~~aL~~~p~~~---~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~   83 (150)
                      ...+++..+...+++.++-.|+.+   .+.+.++.+ ...|        ++.+|.  ..+...+...|+. .        
T Consensus        22 ~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g--------~~~~A~--~~l~~~~~~~~d~-~--------   82 (145)
T PF09976_consen   22 LQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQG--------DYDEAK--AALEKALANAPDP-E--------   82 (145)
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCC--------CHHHHH--HHHHHHHhhCCCH-H--------
Confidence            357889999899999999999984   456678888 8888        677777  6666665544331 0        


Q ss_pred             HHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhcC
Q psy3020          84 QMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKAI  150 (150)
Q Consensus        84 ~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~~  150 (150)
                                      -+..+...++.+++..|+|++|+..+.. +.-.|..+..+..+|.+|+.++
T Consensus        83 ----------------l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g  132 (145)
T PF09976_consen   83 ----------------LKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQG  132 (145)
T ss_pred             ----------------HHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCC
Confidence                            1155677899999999999999999966 5566667888889999998753

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=98.10  E-value=2.7e-06  Score=41.35  Aligned_cols=29  Identities=31%  Similarity=0.612  Sum_probs=26.8

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCc
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNN   30 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~   30 (150)
                      .+|.+|..+|++++|++.|+++++++|+|
T Consensus         6 ~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    6 NLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            58999999999999999999999999965

...

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.09  E-value=3e-06  Score=41.43  Aligned_cols=28  Identities=25%  Similarity=0.484  Sum_probs=25.4

Q ss_pred             HHHHhhccCCCcHHHHHHHHHH-Hhhhhc
Q psy3020          19 TYEEGLKLDPNNEQMKEAIKDV-RNQEMN   46 (150)
Q Consensus        19 ~~~~aL~~~p~~~~a~~~l~~~-~~~g~~   46 (150)
                      +|++||+++|+|+++|..+|.+ ...|+.
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~   29 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDY   29 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCH
Confidence            4899999999999999999999 888844

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.05  E-value=6.3e-05  Score=57.13  Aligned_cols=111  Identities=13%  Similarity=0.050  Sum_probs=66.1

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC-----
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL-----   77 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~-----   77 (150)
                      +|..+...|+.++|.+..+++++. |.++......+.+ ..+        +..+++  ..+...++..|++...+     
T Consensus       269 ~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l-~~~--------~~~~al--~~~e~~lk~~P~~~~l~l~lgr  336 (398)
T PRK10747        269 MAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL-KTN--------NPEQLE--KVLRQQIKQHGDTPLLWSTLGQ  336 (398)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc-cCC--------ChHHHH--HHHHHHHhhCCCCHHHHHHHHH
Confidence            566777777777777777777774 3344444444444 112        334445  55555666666665421     


Q ss_pred             ---CChHHHHHHHH----HhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q psy3020          78 ---SDPSYVQMIKE----IQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLD  132 (150)
Q Consensus        78 ---~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~  132 (150)
                         ....+.++...    +...|+       ...+..++.++.+.|+.++|.++|++++.+-
T Consensus       337 l~~~~~~~~~A~~~le~al~~~P~-------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        337 LLMKHGEWQEASLAFRAALKQRPD-------AYDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence               11111111111    222232       3556789999999999999999999998864

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.04  E-value=6.4e-06  Score=48.68  Aligned_cols=42  Identities=26%  Similarity=0.457  Sum_probs=40.0

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hhhh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQE   44 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g   44 (150)
                      .+|.||+..|+|++|+..+++ ++.+|.++..+..+|.+ ..+|
T Consensus        30 ~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~   72 (84)
T PF12895_consen   30 NLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLG   72 (84)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhC
Confidence            479999999999999999999 99999999999999999 9999

>KOG2003|consensus

Probab=98.01  E-value=0.00013  Score=55.68  Aligned_cols=43  Identities=16%  Similarity=0.136  Sum_probs=23.4

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hhhh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQE   44 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g   44 (150)
                      ++|..+..+|+.++|+++|-+.-.+=-++++++..++.+ ..+.
T Consensus       529 niglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~le  572 (840)
T KOG2003|consen  529 NIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLE  572 (840)
T ss_pred             HhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence            345555555555555555555555555555555555555 4444

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.00  E-value=7.9e-05  Score=56.38  Aligned_cols=90  Identities=13%  Similarity=0.185  Sum_probs=74.1

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .++.++...++..+|++...++|+..|.+.+.+...+.. ...+        ++..|+  .-..++....|+.       
T Consensus       205 ~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~--------~~~lAL--~iAk~av~lsP~~-------  267 (395)
T PF09295_consen  205 LLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK--------KYELAL--EIAKKAVELSPSE-------  267 (395)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--------CHHHHH--HHHHHHHHhCchh-------
Confidence            478888999999999999999999999998888877877 6666        555666  5565566666632       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAI  129 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al  129 (150)
                                           ...|..++.+|...|+|++|+-..+-+=
T Consensus       268 ---------------------f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  268 ---------------------FETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             ---------------------HHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence                                 8899999999999999999998877553

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.00  E-value=0.00022  Score=52.10  Aligned_cols=125  Identities=12%  Similarity=0.163  Sum_probs=86.1

Q ss_pred             HHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCC-----
Q psy3020           6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD-----   79 (150)
Q Consensus         6 ~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~-----   79 (150)
                      =+.=..+.++|++.|...++.||..++++..||.+ +.-|        ....|+   .+...+-..|+...-...     
T Consensus        44 NfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRG--------EvDRAI---RiHQ~L~~spdlT~~qr~lAl~q  112 (389)
T COG2956          44 NFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRG--------EVDRAI---RIHQTLLESPDLTFEQRLLALQQ  112 (389)
T ss_pred             HHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcc--------hHHHHH---HHHHHHhcCCCCchHHHHHHHHH
Confidence            34456788999999999999999999999999999 9999        455666   555566666665431100     


Q ss_pred             -------hHHH----HHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          80 -------PSYV----QMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        80 -------~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                             ..+.    .....+...++.     ...++..+..+|....+|++||++-++.+.+.|+...  ..+|.+|++
T Consensus       113 L~~Dym~aGl~DRAE~~f~~L~de~ef-----a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~--~eIAqfyCE  185 (389)
T COG2956         113 LGRDYMAAGLLDRAEDIFNQLVDEGEF-----AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR--VEIAQFYCE  185 (389)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHhcchhh-----hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch--hHHHHHHHH
Confidence                   0011    111112111211     1678888999999999999999999999999997643  345555554

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.99  E-value=0.00013  Score=50.71  Aligned_cols=44  Identities=14%  Similarity=0.114  Sum_probs=39.6

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hhhhhc
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMN   46 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~   46 (150)
                      +|..+...|+|+.|++.|+..+++||.+-.++.+.|.. +.-|+.
T Consensus       105 LG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~  149 (297)
T COG4785         105 LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRY  149 (297)
T ss_pred             HHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCch
Confidence            78889999999999999999999999999999988877 666654

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.95  E-value=2.3e-05  Score=38.72  Aligned_cols=30  Identities=30%  Similarity=0.479  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q psy3020         104 LLKDKGNAALQANNFKEAIEAYSEAIKLDG  133 (150)
Q Consensus       104 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p  133 (150)
                      +|.++|.++.+.|+|++|+++|++++.+.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~   30 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR   30 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence            478999999999999999999999665443

>KOG0551|consensus

Probab=97.94  E-value=6.2e-05  Score=55.00  Aligned_cols=94  Identities=18%  Similarity=0.271  Sum_probs=74.7

Q ss_pred             hHHHHhhCCHHHHHHHHHHhhccCCCcHH----HHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCC
Q psy3020           4 YSCLSYLGRYKESISTYEEGLKLDPNNEQ----MKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS   78 (150)
Q Consensus         4 g~~~~~~~~~~~A~~~~~~aL~~~p~~~~----a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~   78 (150)
                      |+-|++.++|..|..+|.++|+....|+.    .|.+.+.+ ..+|        -+..++  .++..++..+|.+     
T Consensus        88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~--------NyRs~l--~Dcs~al~~~P~h-----  152 (390)
T KOG0551|consen   88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLG--------NYRSAL--NDCSAALKLKPTH-----  152 (390)
T ss_pred             hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHH--------HHHHHH--HHHHHHHhcCcch-----
Confidence            78899999999999999999998776655    45677888 8888        678888  8999999999976     


Q ss_pred             ChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCC
Q psy3020          79 DPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTN  135 (150)
Q Consensus        79 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~  135 (150)
                                             ..+++.-+.+++...++.+|+..+++.++++-+.
T Consensus       153 -----------------------~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~  186 (390)
T KOG0551|consen  153 -----------------------LKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEA  186 (390)
T ss_pred             -----------------------hhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence                                   4455555666777888888888887777766554

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.91  E-value=3.5e-05  Score=36.86  Aligned_cols=33  Identities=21%  Similarity=0.242  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCC
Q psy3020         103 SLLKDKGNAALQANNFKEAIEAYSEAIKLDGTN  135 (150)
Q Consensus       103 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~  135 (150)
                      +++..+|.++.+.|++++|++.|++.++..|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            367889999999999999999999999999975

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.88  E-value=4.9e-05  Score=40.92  Aligned_cols=39  Identities=18%  Similarity=0.223  Sum_probs=32.6

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV   40 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~   40 (150)
                      .++.++.++|+|++|.+..+.+|+++|+|..+..-...+
T Consensus         6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i   44 (53)
T PF14853_consen    6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI   44 (53)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            478899999999999999999999999999987655555

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.88  E-value=3.1e-05  Score=44.90  Aligned_cols=49  Identities=10%  Similarity=0.220  Sum_probs=40.5

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc-------CCCcchhhcHHHHHHhcC
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLD-------GTNHILFSNRSAAFAKAI  150 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~n~a~~~~~~~  150 (150)
                      +..+.++|.+++..|+|++|+++|++++++.       |.-+..++++|.||..++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g   60 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG   60 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC
Confidence            7789999999999999999999999999762       223678899999987653

...

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.88  E-value=0.00018  Score=56.27  Aligned_cols=122  Identities=9%  Similarity=0.130  Sum_probs=83.9

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC-----
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF-----   76 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~-----   76 (150)
                      ++..|...|++++|++..++||+.+|+.++.+...|.+ ...|        ++.+|.  ..+..+..+|+.+.-.     
T Consensus       200 lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G--------~~~~Aa--~~~~~Ar~LD~~DRyiNsK~a  269 (517)
T PF12569_consen  200 LAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAG--------DLKEAA--EAMDEARELDLADRYINSKCA  269 (517)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC--------CHHHHH--HHHHHHHhCChhhHHHHHHHH
Confidence            57788899999999999999999999999999999999 9999        666776  6666666667654321     


Q ss_pred             -----CCCh-HHHHHHHHHhcCcchhhh---HHH-hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC
Q psy3020          77 -----LSDP-SYVQMIKEIQKDPSLMTL---EAK-ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT  134 (150)
Q Consensus        77 -----~~~~-~~~~~~~~l~~~~~~~~~---~~~-~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  134 (150)
                           .++. .....+...-+.......   ..+ ..-...-|.++.++|++..|++.|....++.-+
T Consensus       270 Ky~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~  337 (517)
T PF12569_consen  270 KYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDD  337 (517)
T ss_pred             HHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence                 0110 111111212121111000   111 444466799999999999999999988876544

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG3060|consensus

Probab=97.82  E-value=0.0007  Score=47.98  Aligned_cols=109  Identities=11%  Similarity=0.040  Sum_probs=81.5

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChH
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPS   81 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~   81 (150)
                      +..+....|+.+.|..|+++.-..=|....+-..-|-. ...|        .+.+|+  .-+...+.-||.+        
T Consensus        58 V~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~--------~~~~A~--e~y~~lL~ddpt~--------  119 (289)
T KOG3060|consen   58 VFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATG--------NYKEAI--EYYESLLEDDPTD--------  119 (289)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhh--------chhhHH--HHHHHHhccCcch--------
Confidence            34556677888889999988776668888887777766 7777        445565  5555555656654        


Q ss_pred             HHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          82 YVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                                          ...+..+-.+...+|+-.+||+...+-++..|.++.+|..++.+|+.+
T Consensus       120 --------------------~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~  167 (289)
T KOG3060|consen  120 --------------------TVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSE  167 (289)
T ss_pred             --------------------hHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH
Confidence                                334444455556778888999999999999999999999999999864

>smart00028 TPR Tetratricopeptide repeats

Probab=97.80  E-value=6e-05  Score=35.01  Aligned_cols=33  Identities=39%  Similarity=0.620  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCC
Q psy3020         103 SLLKDKGNAALQANNFKEAIEAYSEAIKLDGTN  135 (150)
Q Consensus       103 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~  135 (150)
                      ..|..+|.+++..|++++|+.+|+++++++|++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            467889999999999999999999999999863

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.77  E-value=0.00058  Score=55.46  Aligned_cols=48  Identities=6%  Similarity=-0.048  Sum_probs=43.5

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      ...|..+...+...|+++.|.+.+++.++++|++...|..++.+|.+.
T Consensus       494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~  541 (697)
T PLN03081        494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSS  541 (697)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhC
Confidence            567999999999999999999999999999999999999888888754

>KOG0495|consensus

Probab=97.75  E-value=0.00029  Score=55.88  Aligned_cols=127  Identities=13%  Similarity=0.111  Sum_probs=79.1

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChH
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPS   81 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~   81 (150)
                      .+..+...|+...|...+.+|++.+|++.+.|+.-..+ ....        +++.+-  .-+.++....|....+.....
T Consensus       590 ~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~--------e~eraR--~llakar~~sgTeRv~mKs~~  659 (913)
T KOG0495|consen  590 YAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFEND--------ELERAR--DLLAKARSISGTERVWMKSAN  659 (913)
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccc--------cHHHHH--HHHHHHhccCCcchhhHHHhH
Confidence            34455666888888888888888888888887766665 3333        333333  333333333443333221111


Q ss_pred             ----------HHHHH-HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHH
Q psy3020          82 ----------YVQMI-KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAA  145 (150)
Q Consensus        82 ----------~~~~~-~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~  145 (150)
                                ..+.+ +.+..-|..      ...|..+|+++-++++.+.|-+.|...+..-|+.+.+|..++.+
T Consensus       660 ~er~ld~~eeA~rllEe~lk~fp~f------~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl  728 (913)
T KOG0495|consen  660 LERYLDNVEEALRLLEEALKSFPDF------HKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL  728 (913)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhCCch------HHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence                      11111 113344444      77888888888888888888888888888888888888777654

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.74  E-value=0.00028  Score=52.61  Aligned_cols=47  Identities=26%  Similarity=0.270  Sum_probs=40.3

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      +..+..+|..+++.+.|.+|-++|+.|+..-| +...|..+|.++-++
T Consensus       328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~  374 (400)
T COG3071         328 PLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQL  374 (400)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHc
Confidence            78888899999999999999999999999999 555667788877665

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.74  E-value=0.00036  Score=51.02  Aligned_cols=36  Identities=8%  Similarity=0.021  Sum_probs=17.5

Q ss_pred             hhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hhhh
Q psy3020           9 YLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQE   44 (150)
Q Consensus         9 ~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g   44 (150)
                      ...+++.|+..+.+|++.||+.+.+-..+|++ ...|
T Consensus       192 ~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g  228 (389)
T COG2956         192 ASSDVDRARELLKKALQADKKCVRASIILGRVELAKG  228 (389)
T ss_pred             hhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhcc
Confidence            33444445555555555555555554444544 4444

>KOG2796|consensus

Probab=97.71  E-value=0.00056  Score=48.89  Aligned_cols=132  Identities=14%  Similarity=0.185  Sum_probs=78.2

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCC-CcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCC------
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDP-NNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRT------   73 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p-~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~------   73 (150)
                      .+..|+...|.|.-.+..+.++++-+| ..+....+++.+ ...|+.+     ..+.-+  .++.+.-..-.+-      
T Consensus       182 ~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k-----~a~~yf--~~vek~~~kL~~~q~~~~V  254 (366)
T KOG2796|consen  182 SMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIK-----TAEKYF--QDVEKVTQKLDGLQGKIMV  254 (366)
T ss_pred             HHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHH-----HHHHHH--HHHHHHHhhhhccchhHHH
Confidence            357789999999999999999999995 577777899999 8888553     111112  1111110000000      


Q ss_pred             -----CCCCCChHHHHHH----HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCc---chhhc
Q psy3020          74 -----KPFLSDPSYVQMI----KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNH---ILFSN  141 (150)
Q Consensus        74 -----~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~n  141 (150)
                           ..++....+....    +-+..+++.      +.+-.+++-+++..|+..+|++..+.+++++|...   .+.+|
T Consensus       255 ~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~------~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~n  328 (366)
T KOG2796|consen  255 LMNSAFLHLGQNNFAEAHRFFTEILRMDPRN------AVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFN  328 (366)
T ss_pred             HhhhhhheecccchHHHHHHHhhccccCCCc------hhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHH
Confidence                 0011111111111    123445544      66677777777778888888888888888888643   34455


Q ss_pred             HHHHH
Q psy3020         142 RSAAF  146 (150)
Q Consensus       142 ~a~~~  146 (150)
                      +..+|
T Consensus       329 L~tmy  333 (366)
T KOG2796|consen  329 LTTMY  333 (366)
T ss_pred             HHHHH
Confidence            54444

>KOG4234|consensus

Probab=97.69  E-value=0.00013  Score=50.10  Aligned_cols=63  Identities=17%  Similarity=0.331  Sum_probs=56.7

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTK   74 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~   74 (150)
                      +-|.|+.++++++.|++.+.+||+++|.+..++...+.+ ..+.        ++..++  .++.+.+..+|...
T Consensus       139 Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e--------k~eeal--eDyKki~E~dPs~~  202 (271)
T KOG4234|consen  139 NRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME--------KYEEAL--EDYKKILESDPSRR  202 (271)
T ss_pred             hhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh--------hHHHHH--HHHHHHHHhCcchH
Confidence            347899999999999999999999999999999999998 7776        788899  99999999999653

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.68  E-value=0.0012  Score=42.84  Aligned_cols=49  Identities=22%  Similarity=0.272  Sum_probs=43.8

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCc---chhhcHHHHHHhcC
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNH---ILFSNRSAAFAKAI  150 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~n~a~~~~~~~  150 (150)
                      ..+...+|.++++.++|++|+..+.+-|+++|+++   -+++.+|.++++++
T Consensus        47 ~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~   98 (142)
T PF13512_consen   47 EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD   98 (142)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence            56778899999999999999999999999999986   57888999998763

>KOG4642|consensus

Probab=97.67  E-value=3.4e-05  Score=54.02  Aligned_cols=48  Identities=29%  Similarity=0.490  Sum_probs=41.8

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      +.-+...|+.++....|..|+.+|.+||-++|+.+..|.||+.||+++
T Consensus        10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~   57 (284)
T KOG4642|consen   10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKL   57 (284)
T ss_pred             HHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHh
Confidence            455677788888899999999999999999999999999999999875

>KOG0545|consensus

Probab=97.66  E-value=0.00049  Score=48.63  Aligned_cols=96  Identities=21%  Similarity=0.214  Sum_probs=66.6

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhc--------cCCCcHHH----------HHHHHHH-HhhhhccCCCCCchhhhhCChHH
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLK--------LDPNNEQM----------KEAIKDV-RNQEMNDMNRGDPFANLFSDPNI   63 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~--------~~p~~~~a----------~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~   63 (150)
                      -|+-++..|+|++|...|..|+-        -.|..++.          +.+..+| ...|        ++-+++  ..+
T Consensus       184 ~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~--------e~yevl--eh~  253 (329)
T KOG0545|consen  184 EGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKE--------EYYEVL--EHC  253 (329)
T ss_pred             hhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHH--------HHHHHH--HHH
Confidence            37889999999999999998863        34554442          2334444 3334        333344  444


Q ss_pred             HHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCc
Q psy3020          64 FVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNH  136 (150)
Q Consensus        64 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~  136 (150)
                      ...++..|+                      .      ..+++.+|.+....=+..+|...|.++|+++|.-.
T Consensus       254 seiL~~~~~----------------------n------vKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpsla  298 (329)
T KOG0545|consen  254 SEILRHHPG----------------------N------VKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLA  298 (329)
T ss_pred             HHHHhcCCc----------------------h------HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhH
Confidence            444444443                      2      78888888888888888999999999999999643

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.66  E-value=0.00015  Score=52.15  Aligned_cols=64  Identities=9%  Similarity=-0.016  Sum_probs=53.4

Q ss_pred             ChhhHHHHhhCCHHHHHHHHHHhhccCCCc---HHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCC
Q psy3020           1 MTTYSCLSYLGRYKESISTYEEGLKLDPNN---EQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTK   74 (150)
Q Consensus         1 ~~lg~~~~~~~~~~~A~~~~~~aL~~~p~~---~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~   74 (150)
                      +++|.+|+..|++++|+..|+++++..|++   ++++..+|.+ ..+|        +..+|.  ..+...+...|+..
T Consensus       184 y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g--------~~~~A~--~~~~~vi~~yP~s~  251 (263)
T PRK10803        184 YWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG--------DTAKAK--AVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHHCcCCH
Confidence            479999999999999999999999998884   6678888888 8888        666777  77777777778653

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.65  E-value=0.00054  Score=43.40  Aligned_cols=83  Identities=12%  Similarity=-0.012  Sum_probs=62.5

Q ss_pred             HHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHH
Q psy3020          32 QMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGN  110 (150)
Q Consensus        32 ~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~  110 (150)
                      .+++.++.+ ..+|        ...+|+  +.+.+++......                   +      ....++..+|.
T Consensus         2 ~~~~~~A~a~d~~G--------~~~~Ai--~~Y~~Al~~gL~~-------------------~------~~~~a~i~las   46 (120)
T PF12688_consen    2 RALYELAWAHDSLG--------REEEAI--PLYRRALAAGLSG-------------------A------DRRRALIQLAS   46 (120)
T ss_pred             chHHHHHHHHHhcC--------CHHHHH--HHHHHHHHcCCCc-------------------h------HHHHHHHHHHH
Confidence            456677777 7778        556677  7776666543321                   1      12678999999


Q ss_pred             HHHHhcCHHHHHHHHHHHHhhcCC---CcchhhcHHHHHHhc
Q psy3020         111 AALQANNFKEAIEAYSEAIKLDGT---NHILFSNRSAAFAKA  149 (150)
Q Consensus       111 ~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~n~a~~~~~~  149 (150)
                      .+...|++++|+..+++++...|+   +..+...++.++..+
T Consensus        47 tlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~   88 (120)
T PF12688_consen   47 TLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNL   88 (120)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHC
Confidence            999999999999999999999998   777777777776643

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=97.63  E-value=5e-05  Score=37.48  Aligned_cols=26  Identities=27%  Similarity=0.401  Sum_probs=22.0

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLD   27 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~   27 (150)
                      .||.+|...|+|++|+++|+++|.+.
T Consensus         4 ~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    4 NLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            58999999999999999999966543

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=0.0015  Score=47.16  Aligned_cols=114  Identities=14%  Similarity=0.158  Sum_probs=80.0

Q ss_pred             hHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCC---C
Q psy3020           4 YSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS---D   79 (150)
Q Consensus         4 g~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~---~   79 (150)
                      |......|++.+|...|..+++.+|++.++...++.+ ...|+.        +.+.   .+...+..+.....++.   +
T Consensus       141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~--------e~A~---~iL~~lP~~~~~~~~~~l~a~  209 (304)
T COG3118         141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDV--------EAAQ---AILAALPLQAQDKAAHGLQAQ  209 (304)
T ss_pred             hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCCh--------HHHH---HHHHhCcccchhhHHHHHHHH
Confidence            4567788999999999999999999999999999999 888844        2222   22222222222222211   0


Q ss_pred             ----------hHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC
Q psy3020          80 ----------PSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT  134 (150)
Q Consensus        80 ----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  134 (150)
                                +........+..+|++      ..+-..++..+...|+.++|.+.+-..+..|.+
T Consensus       210 i~ll~qaa~~~~~~~l~~~~aadPdd------~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~  268 (304)
T COG3118         210 IELLEQAAATPEIQDLQRRLAADPDD------VEAALALADQLHLVGRNEAALEHLLALLRRDRG  268 (304)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence                      1122333445556655      888899999999999999999999888887544

>smart00028 TPR Tetratricopeptide repeats

Probab=97.60  E-value=9.6e-05  Score=34.27  Aligned_cols=29  Identities=41%  Similarity=0.678  Sum_probs=27.0

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCc
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNN   30 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~   30 (150)
                      .+|.++...+++++|+.+|+++++++|++
T Consensus         6 ~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        6 NLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            57999999999999999999999999974

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG1308|consensus

Probab=97.54  E-value=5.6e-05  Score=55.40  Aligned_cols=92  Identities=18%  Similarity=0.196  Sum_probs=72.6

Q ss_pred             HHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHH
Q psy3020           5 SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYV   83 (150)
Q Consensus         5 ~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~   83 (150)
                      .-.+..|.+++|+++|..++.++|.....|-..+.+ ..++        +-..++  .++..++.++|+.          
T Consensus       122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~--------kp~~ai--rD~d~A~ein~Ds----------  181 (377)
T KOG1308|consen  122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLK--------KPNAAI--RDCDFAIEINPDS----------  181 (377)
T ss_pred             HHHhcCcchhhhhcccccccccCCchhhhcccccceeeecc--------CCchhh--hhhhhhhccCccc----------
Confidence            345677999999999999999999999999999988 7777        334555  7777788888875          


Q ss_pred             HHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC
Q psy3020          84 QMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT  134 (150)
Q Consensus        84 ~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  134 (150)
                                        ...+..+|.....+|+|++|-..+..+.+++-+
T Consensus       182 ------------------a~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  182 ------------------AKGYKFRGYAERLLGNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             ------------------ccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence                              344555666677778888888888888777655

>KOG1130|consensus

Probab=97.51  E-value=0.00024  Score=53.64  Aligned_cols=114  Identities=8%  Similarity=0.148  Sum_probs=78.7

Q ss_pred             hHHHHhhCCHHHHHHHHHHhhccCCCcHHHH----HHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCC
Q psy3020           4 YSCLSYLGRYKESISTYEEGLKLDPNNEQMK----EAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS   78 (150)
Q Consensus         4 g~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~----~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~   78 (150)
                      |.-+++.|++..++..|+.||++--++...+    ..|+.. ..++        ++.+|+         .....+     
T Consensus        24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~--------DY~kAl---------~yH~hD-----   81 (639)
T KOG1130|consen   24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLK--------DYEKAL---------KYHTHD-----   81 (639)
T ss_pred             HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHh--------hHHHHH---------hhhhhh-----
Confidence            6678899999999999999999988776543    334444 4444        444444         222211     


Q ss_pred             ChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC------CcchhhcHHHHHHhc
Q psy3020          79 DPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT------NHILFSNRSAAFAKA  149 (150)
Q Consensus        79 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~n~a~~~~~~  149 (150)
                          +-..+.+......      +.+--++|+++-.+|.|++|+.|+.+-+.+-..      ...++||+|.+|+..
T Consensus        82 ----ltlar~lgdklGE------AKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhak  148 (639)
T KOG1130|consen   82 ----LTLARLLGDKLGE------AKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAK  148 (639)
T ss_pred             ----HHHHHHhcchhcc------ccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhc
Confidence                1112223222222      667789999999999999999999988776544      468899999999754

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.50  E-value=7e-05  Score=35.79  Aligned_cols=29  Identities=28%  Similarity=0.503  Sum_probs=27.2

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCc
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNN   30 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~   30 (150)
                      .+|.|+...|++++|++.|+++++..|++
T Consensus         5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    5 RLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            68999999999999999999999999974

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.47  E-value=0.00054  Score=36.86  Aligned_cols=41  Identities=10%  Similarity=0.055  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHH
Q psy3020         104 LLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSA  144 (150)
Q Consensus       104 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~  144 (150)
                      .++.++..+++.|+|++|.++...+|+++|+|..+......
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~   43 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL   43 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            46778888999999999999999999999999877654433

>PLN03077 Protein ECB2; Provisional

Probab=97.42  E-value=0.0041  Score=51.78  Aligned_cols=134  Identities=11%  Similarity=0.107  Sum_probs=86.6

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhc--cCCCcHHHHHHHHHHHhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC---
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLK--LDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF---   76 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~--~~p~~~~a~~~l~~~~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~---   76 (150)
                      .+..+|...|+.++|++.|++..+  +.||.......+..+...|..+     +..+.+  ....+.....|+...+   
T Consensus       559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~-----ea~~~f--~~M~~~~gi~P~~~~y~~l  631 (857)
T PLN03077        559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVT-----QGLEYF--HSMEEKYSITPNLKHYACV  631 (857)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHH-----HHHHHH--HHHHHHhCCCCchHHHHHH
Confidence            356788999999999999998776  6777666544443334455332     222233  3333334455653211   


Q ss_pred             ---CC-Ch---HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          77 ---LS-DP---SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        77 ---~~-~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                         +. .+   .....++.....       +.+..|..+-..+...|+.+.+....+++++++|+++..|..++.+|...
T Consensus       632 v~~l~r~G~~~eA~~~~~~m~~~-------pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~  704 (857)
T PLN03077        632 VDLLGRAGKLTEAYNFINKMPIT-------PDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADA  704 (857)
T ss_pred             HHHHHhCCCHHHHHHHHHHCCCC-------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHC
Confidence               00 01   122223332222       22577888888888899999999999999999999999999999888653

>KOG2376|consensus

Probab=97.40  E-value=0.0033  Score=49.37  Aligned_cols=109  Identities=15%  Similarity=0.240  Sum_probs=75.4

Q ss_pred             hHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHH
Q psy3020           4 YSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSY   82 (150)
Q Consensus         4 g~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~   82 (150)
                      +.|++++++.++|+.+++   -+|+.+.....-.+++ +.+|        .+.+++  ..|....+.+.++.+...+..+
T Consensus        86 AYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~--------~ydeal--diY~~L~kn~~dd~d~~~r~nl  152 (652)
T KOG2376|consen   86 AYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLE--------RYDEAL--DIYQHLAKNNSDDQDEERRANL  152 (652)
T ss_pred             HHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHh--------hHHHHH--HHHHHHHhcCCchHHHHHHHHH
Confidence            679999999999999999   5677767677777899 9999        667887  6666555666655442111011


Q ss_pred             HH--------HHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q psy3020          83 VQ--------MIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIK  130 (150)
Q Consensus        83 ~~--------~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~  130 (150)
                      ..        ..+.+..-|+     ...+.+++.++++...|+|.+|++.+++|+.
T Consensus       153 ~a~~a~l~~~~~q~v~~v~e-----~syel~yN~Ac~~i~~gky~qA~elL~kA~~  203 (652)
T KOG2376|consen  153 LAVAAALQVQLLQSVPEVPE-----DSYELLYNTACILIENGKYNQAIELLEKALR  203 (652)
T ss_pred             HHHHHhhhHHHHHhccCCCc-----chHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            11        1111111111     1278889999999999999999999999943

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.33  E-value=0.0088  Score=39.83  Aligned_cols=46  Identities=26%  Similarity=0.330  Sum_probs=31.6

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHH
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFA  147 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~  147 (150)
                      ...+..++..+...+++.+|+..+.+++...|.....+..++..+.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (291)
T COG0457         202 AEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLL  247 (291)
T ss_pred             hHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH
Confidence            4556677777777777788888888888877775555555555543

>KOG4555|consensus

Probab=97.33  E-value=0.00076  Score=43.30  Aligned_cols=47  Identities=23%  Similarity=0.275  Sum_probs=41.2

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                      ...+...|..+...|+.++|++-|.++|.+-|..+.+|.||+.++--
T Consensus        43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL   89 (175)
T KOG4555|consen   43 SRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRL   89 (175)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHH
Confidence            45566678888899999999999999999999999999999998753

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.31  E-value=0.0076  Score=42.83  Aligned_cols=120  Identities=10%  Similarity=0.022  Sum_probs=68.2

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHH---HHHHHHHH--HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQ---MKEAIKDV--RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF   76 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~---a~~~l~~~--~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~   76 (150)
                      .++.++++.++|++|+...++-+++.|+++.   +....+.+  ....+..... .....++  ..+.+.+..-|++.-.
T Consensus        76 ~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq-~~~~~A~--~~f~~~i~ryPnS~Ya  152 (254)
T COG4105          76 DLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQ-SAARAAF--AAFKELVQRYPNSRYA  152 (254)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCH-HHHHHHH--HHHHHHHHHCCCCcch
Confidence            4677888888888888888888888887554   33333333  2222110000 1345566  6666677767765432


Q ss_pred             CCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCC
Q psy3020          77 LSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTN  135 (150)
Q Consensus        77 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~  135 (150)
                      -   +....+..+....        +.--...|+.+.+.|.+..|+.-+++.++--|+-
T Consensus       153 ~---dA~~~i~~~~d~L--------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t  200 (254)
T COG4105         153 P---DAKARIVKLNDAL--------AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDT  200 (254)
T ss_pred             h---hHHHHHHHHHHHH--------HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccc
Confidence            1   1222222221110        2233446777778888888888888888877764

>KOG2376|consensus

Probab=97.29  E-value=0.0024  Score=50.13  Aligned_cols=110  Identities=16%  Similarity=0.205  Sum_probs=69.3

Q ss_pred             HHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC---------
Q psy3020           7 LSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF---------   76 (150)
Q Consensus         7 ~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~---------   76 (150)
                      +-+.++|++|.....+.|.+.|++..+...-.-+ ...+        .|.+|+  ..+...........-+         
T Consensus        22 ~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~--------ky~~AL--k~ikk~~~~~~~~~~~fEKAYc~Yr   91 (652)
T KOG2376|consen   22 HGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLD--------KYEDAL--KLIKKNGALLVINSFFFEKAYCEYR   91 (652)
T ss_pred             hccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhh--------HHHHHH--HHHHhcchhhhcchhhHHHHHHHHH
Confidence            4567899999999999999999999998876666 6666        455554  2222211111111110         


Q ss_pred             CCCh-HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC
Q psy3020          77 LSDP-SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT  134 (150)
Q Consensus        77 ~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  134 (150)
                      ++.. .+...+..++..+        ...+.-.++++|+.|+|++|+..|...++-+.+
T Consensus        92 lnk~Dealk~~~~~~~~~--------~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d  142 (652)
T KOG2376|consen   92 LNKLDEALKTLKGLDRLD--------DKLLELRAQVLYRLERYDEALDIYQHLAKNNSD  142 (652)
T ss_pred             cccHHHHHHHHhcccccc--------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc
Confidence            1111 1222222222222        557788899999999999999999998665544

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.28  E-value=0.005  Score=44.64  Aligned_cols=47  Identities=21%  Similarity=0.222  Sum_probs=34.2

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcc-------hhhcHHHHHHh
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHI-------LFSNRSAAFAK  148 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~n~a~~~~~  148 (150)
                      ...+..++.++.+.|+|++|++.|++.....-+++.       .++..++|++-
T Consensus       155 ~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~  208 (282)
T PF14938_consen  155 AECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA  208 (282)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence            677788999999999999999999999886544432       33445555543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.20  E-value=0.0037  Score=48.61  Aligned_cols=104  Identities=13%  Similarity=0.074  Sum_probs=80.3

Q ss_pred             hCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHH
Q psy3020          10 LGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKE   88 (150)
Q Consensus        10 ~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   88 (150)
                      ....+.|.+.++..++.-|+.+-.....|.+ ...|        ++.+|+  ..+.+++....+         + ..   
T Consensus       246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g--------~~~~Ai--~~~~~a~~~q~~---------~-~Q---  302 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKG--------NLEEAI--ESFERAIESQSE---------W-KQ---  302 (468)
T ss_pred             CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc--------CHHHHH--HHHHHhccchhh---------H-Hh---
Confidence            4567889999999999999999999999999 8888        666776  555544421111         1 11   


Q ss_pred             HhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHH
Q psy3020          89 IQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFA  147 (150)
Q Consensus        89 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~  147 (150)
                                 -+.-.+..+|+.+..+++|++|.++|.+.++.+.++...|.+.+.|.+
T Consensus       303 -----------l~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~  350 (468)
T PF10300_consen  303 -----------LHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL  350 (468)
T ss_pred             -----------HHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence                       115678999999999999999999999999999998877776655543

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.20  E-value=0.0015  Score=43.97  Aligned_cols=48  Identities=23%  Similarity=0.326  Sum_probs=35.3

Q ss_pred             hHHHHHHHHHHHHh----------cCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         102 ISLLKDKGNAALQA----------NNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       102 ~~~~~~~g~~~~~~----------~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      ++.+++=|.++..+          .-+++|+.-|++||.++|+...+++++|.+|..+
T Consensus        25 adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~   82 (186)
T PF06552_consen   25 ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSL   82 (186)
T ss_dssp             HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence            45555555555432          4567899999999999999999999999999754

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.19  E-value=0.0057  Score=41.78  Aligned_cols=96  Identities=14%  Similarity=0.143  Sum_probs=65.4

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCC-cHH--HHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPN-NEQ--MKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~-~~~--a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~   77 (150)
                      .++..+...+++++|...++.+|....| +..  +...|+.+ ...|        .+.+++  ..+..     +...   
T Consensus        94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~--------k~D~AL--~~L~t-----~~~~---  155 (207)
T COG2976          94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQK--------KADAAL--KTLDT-----IKEE---  155 (207)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhh--------hHHHHH--HHHhc-----cccc---
Confidence            4677888999999999999999865544 222  34667777 7777        455555  22210     0000   


Q ss_pred             CChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCc
Q psy3020          78 SDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNH  136 (150)
Q Consensus        78 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~  136 (150)
                         .+.                  +.....+|.++..+|+-.+|...|+++++.+++.+
T Consensus       156 ---~w~------------------~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~  193 (207)
T COG2976         156 ---SWA------------------AIVAELRGDILLAKGDKQEARAAYEKALESDASPA  193 (207)
T ss_pred             ---cHH------------------HHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence               010                  23345589999999999999999999999986543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.17  E-value=0.0034  Score=45.80  Aligned_cols=122  Identities=13%  Similarity=0.041  Sum_probs=77.1

Q ss_pred             hHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC-----
Q psy3020           4 YSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL-----   77 (150)
Q Consensus         4 g~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~-----   77 (150)
                      -.+|...+|++.|.+.++..-+++.|..-....-+-+ ...|..      .+.+|+  -.+.+.....+.+...+     
T Consensus       138 Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e------~~~~A~--y~f~El~~~~~~t~~~lng~A~  209 (290)
T PF04733_consen  138 VQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGE------KYQDAF--YIFEELSDKFGSTPKLLNGLAV  209 (290)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTT------CCCHHH--HHHHHHHCCS--SHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCch------hHHHHH--HHHHHHHhccCCCHHHHHHHHH
Confidence            4678889999999999999999988877777666667 666632      455555  44444333223322210     


Q ss_pred             ---CChHHH---HHH-HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCH-HHHHHHHHHHHhhcCCCcchh
Q psy3020          78 ---SDPSYV---QMI-KEIQKDPSLMTLEAKISLLKDKGNAALQANNF-KEAIEAYSEAIKLDGTNHILF  139 (150)
Q Consensus        78 ---~~~~~~---~~~-~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~A~~~~~~al~~~p~~~~~~  139 (150)
                         ....+.   ..+ +.+..+|..      +.++.++..+....|+. +.+-++..+.-..+|+++..-
T Consensus       210 ~~l~~~~~~eAe~~L~~al~~~~~~------~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~  273 (290)
T PF04733_consen  210 CHLQLGHYEEAEELLEEALEKDPND------PDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVK  273 (290)
T ss_dssp             HHHHCT-HHHHHHHHHHHCCC-CCH------HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhccCC------HHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence               111122   222 225555655      88999999998888988 667778888888999987653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.15  E-value=0.019  Score=38.15  Aligned_cols=134  Identities=21%  Similarity=0.247  Sum_probs=78.1

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhc--cCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC---
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLK--LDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF---   76 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~--~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~---   76 (150)
                      .+..+...+.+..+...+..++.  ..+.....+...+.+ ...+        .+..++  ..+...+...+.....   
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~--~~~~~~~~~~~~~~~~~~~  134 (291)
T COG0457          65 LALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALG--------KYEEAL--ELLEKALALDPDPDLAEAL  134 (291)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHh--------hHHHHH--HHHHHHHcCCCCcchHHHH
Confidence            45566777777777777777776  667777777777666 6655        333344  3444444433332110   


Q ss_pred             ------CCChHHHHHHHH----HhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC-CcchhhcHHHH
Q psy3020          77 ------LSDPSYVQMIKE----IQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT-NHILFSNRSAA  145 (150)
Q Consensus        77 ------~~~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~n~a~~  145 (150)
                            .....+...+..    +...+..   ......+...+..+...+++++|+..+.+++...|. ....+.+++.+
T Consensus       135 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  211 (291)
T COG0457         135 LALGALYELGDYEEALELYEKALELDPEL---NELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLL  211 (291)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCc---cchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHH
Confidence                  000011111111    1111100   011445555666677889999999999999999999 68888888888


Q ss_pred             HHhc
Q psy3020         146 FAKA  149 (150)
Q Consensus       146 ~~~~  149 (150)
                      +...
T Consensus       212 ~~~~  215 (291)
T COG0457         212 YLKL  215 (291)
T ss_pred             HHHc
Confidence            7653

>PRK10941 hypothetical protein; Provisional

Probab=97.05  E-value=0.0037  Score=45.09  Aligned_cols=63  Identities=10%  Similarity=0.014  Sum_probs=56.4

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCC
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKP   75 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~   75 (150)
                      +=.+|.+.++++.|+.+.+..|.++|+++.-+...|.+ ..+|        +...|.  .++..-+..-|+++.
T Consensus       187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~--------c~~~A~--~DL~~fl~~~P~dp~  250 (269)
T PRK10941        187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLD--------CEHVAL--SDLSYFVEQCPEDPI  250 (269)
T ss_pred             HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------CcHHHH--HHHHHHHHhCCCchh
Confidence            45689999999999999999999999999999999999 9999        777788  888888888887765

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.02  E-value=0.015  Score=41.32  Aligned_cols=99  Identities=14%  Similarity=0.055  Sum_probs=71.8

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHH---HHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCC
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMK---EAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS   78 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~---~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~   78 (150)
                      -|......|+|++|++.|+.+....|..+.+-   .+++.. ...+        ++..|.  ..+.+-+++.|+++..  
T Consensus        40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~--------~y~~A~--~~~drFi~lyP~~~n~--  107 (254)
T COG4105          40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNG--------EYDLAL--AYIDRFIRLYPTHPNA--  107 (254)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcc--------cHHHHH--HHHHHHHHhCCCCCCh--
Confidence            46777889999999999999999999887654   455666 6666        677777  6777777888877652  


Q ss_pred             ChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHH--------hcCHHHHHHHHHHHHhhcCCCc
Q psy3020          79 DPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQ--------ANNFKEAIEAYSEAIKLDGTNH  136 (150)
Q Consensus        79 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~--------~~~~~~A~~~~~~al~~~p~~~  136 (150)
                                             ..+++.+|.+.+.        ..--.+|+..|.+.|+.-|++.
T Consensus       108 -----------------------dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~  150 (254)
T COG4105         108 -----------------------DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR  150 (254)
T ss_pred             -----------------------hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence                                   3334444444432        2233588999999999999863

>KOG2471|consensus

Probab=97.02  E-value=0.0018  Score=49.94  Aligned_cols=47  Identities=15%  Similarity=0.156  Sum_probs=44.4

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                      .+.+++.|..+...|+.-.|.+||.+++.....+|.+|..+|.|.+.
T Consensus       335 ~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  335 MEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             hhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999874

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.94  E-value=0.0029  Score=31.60  Aligned_cols=31  Identities=29%  Similarity=0.409  Sum_probs=26.8

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLD  132 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~  132 (150)
                      ..++.++|.++...|++++|...+.+++++-
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            3578899999999999999999999999864

>KOG1130|consensus

Probab=96.93  E-value=0.0017  Score=49.20  Aligned_cols=44  Identities=9%  Similarity=0.065  Sum_probs=33.7

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHH------HHHHHHHH-Hhhhh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQ------MKEAIKDV-RNQEM   45 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~------a~~~l~~~-~~~g~   45 (150)
                      +||..|+-+|+|+.|+.+-+.-|.|-..+.+      ++..++.+ .-+|+
T Consensus       200 nLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~  250 (639)
T KOG1130|consen  200 NLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN  250 (639)
T ss_pred             ccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc
Confidence            5788888899999999988888887765543      56677777 67773

>KOG0545|consensus

Probab=96.88  E-value=0.0035  Score=44.48  Aligned_cols=46  Identities=24%  Similarity=0.291  Sum_probs=41.7

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHH
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFA  147 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~  147 (150)
                      ...+.+..+++...|+|-++++.+++.|..+|+|..+|+.||.++.
T Consensus       230 tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAha  275 (329)
T KOG0545|consen  230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHA  275 (329)
T ss_pred             hHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            4456778889999999999999999999999999999999998875

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.87  E-value=0.012  Score=45.60  Aligned_cols=124  Identities=10%  Similarity=0.058  Sum_probs=72.1

Q ss_pred             hCCHHHHHHHHHHhhccCCCcHHHHHHHHHH--HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHH
Q psy3020          10 LGRYKESISTYEEGLKLDPNNEQMKEAIKDV--RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIK   87 (150)
Q Consensus        10 ~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~--~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~   87 (150)
                      ..+++.-++.-.+||+++|+-++++.-|+.=  .-..    ++..-+.++.  .--...++.+.... .+  ..+.....
T Consensus       181 ERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~----Eae~l~rqAv--kAgE~~lg~s~~~~-~~--g~~~e~~~  251 (539)
T PF04184_consen  181 ERNPQARIKAAKEALEINPDCADAYILLAEEEASTIV----EAEELLRQAV--KAGEASLGKSQFLQ-HH--GHFWEAWH  251 (539)
T ss_pred             cCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHH----HHHHHHHHHH--HHHHHhhchhhhhh-cc--cchhhhhh
Confidence            4677888899999999999999998877652  1111    0000222232  11111111111000 00  01111100


Q ss_pred             HHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC--CcchhhcHHHHHHhc
Q psy3020          88 EIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT--NHILFSNRSAAFAKA  149 (150)
Q Consensus        88 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~n~a~~~~~~  149 (150)
                         ..+..    ...-+-..++.++.+.|+..|||+.|.+.++.+|.  +-..+.|+..|++++
T Consensus       252 ---~Rdt~----~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLel  308 (539)
T PF04184_consen  252 ---RRDTN----VLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLEL  308 (539)
T ss_pred             ---ccccc----hhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhc
Confidence               00000    11334466899999999999999999999998886  456889999998875

The molecular function of this protein is uncertain.

>KOG3081|consensus

Probab=96.77  E-value=0.027  Score=40.42  Aligned_cols=45  Identities=22%  Similarity=0.208  Sum_probs=39.8

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHH
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF  146 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~  146 (150)
                      +..+..++.+.+.+|+|++|....+.+|..+|++|....|+-.+-
T Consensus       207 ~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a  251 (299)
T KOG3081|consen  207 PLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLA  251 (299)
T ss_pred             hHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence            566777788889999999999999999999999999999887653

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.76  E-value=0.0021  Score=41.72  Aligned_cols=44  Identities=23%  Similarity=0.322  Sum_probs=37.9

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hhhhhc
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMN   46 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~   46 (150)
                      ++..+...|++++|+..+++++.+||.+..++..+..+ ..+|+.
T Consensus        68 l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~  112 (146)
T PF03704_consen   68 LAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRR  112 (146)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCH
Confidence            56778899999999999999999999999999999999 999944

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG3824|consensus

Probab=96.73  E-value=0.0058  Score=44.81  Aligned_cols=43  Identities=23%  Similarity=0.276  Sum_probs=39.6

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHH
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSA  144 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~  144 (150)
                      ++.+...|...-..++.-+|-.+|.+|+.++|.|..+..||+.
T Consensus       150 p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  150 PQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            7788889998888899999999999999999999999999875

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=96.71  E-value=0.0085  Score=29.47  Aligned_cols=33  Identities=27%  Similarity=0.260  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHH--HHHHHhhcCCC
Q psy3020         103 SLLKDKGNAALQANNFKEAIEA--YSEAIKLDGTN  135 (150)
Q Consensus       103 ~~~~~~g~~~~~~~~~~~A~~~--~~~al~~~p~~  135 (150)
                      +.|..+|-.++.+|++++|+..  |.-+..++|.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            4678889999999999999999  55888888865

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.71  E-value=0.06  Score=46.08  Aligned_cols=29  Identities=17%  Similarity=0.196  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q psy3020         103 SLLKDKGNAALQANNFKEAIEAYSEAIKL  131 (150)
Q Consensus       103 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~  131 (150)
                      ..|..+...+.+.|++++|++.|.+..+.
T Consensus       615 ~tynsLI~ay~k~G~~deAl~lf~eM~~~  643 (1060)
T PLN03218        615 EVYTIAVNSCSQKGDWDFALSIYDDMKKK  643 (1060)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence            45555555566666666666666665554

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.62  E-value=0.069  Score=45.73  Aligned_cols=46  Identities=20%  Similarity=0.191  Sum_probs=33.5

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHh--hcCCCcchhhcHHHHHHh
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIK--LDGTNHILFSNRSAAFAK  148 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~n~a~~~~~  148 (150)
                      ...|..+...+.+.|++++|++.|.+..+  +.| +...|..+..+|.+
T Consensus       684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k  731 (1060)
T PLN03218        684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCE  731 (1060)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHH
Confidence            56777888888888888888888888765  455 34556666666654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.61  E-value=0.026  Score=40.96  Aligned_cols=104  Identities=11%  Similarity=0.061  Sum_probs=65.4

Q ss_pred             hhhHHHHhh-CCHHHHHHHHHHhhccCC--Cc----HHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCC
Q psy3020           2 TTYSCLSYL-GRYKESISTYEEGLKLDP--NN----EQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRT   73 (150)
Q Consensus         2 ~lg~~~~~~-~~~~~A~~~~~~aL~~~p--~~----~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~   73 (150)
                      .+|..|... |++++|++.|++|+++-.  +.    ...+..++.+ ..+|        .+.+|+  ..+.+.....-+.
T Consensus       119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~--------~y~~A~--~~~e~~~~~~l~~  188 (282)
T PF14938_consen  119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG--------RYEEAI--EIYEEVAKKCLEN  188 (282)
T ss_dssp             HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---------HHHHH--HHHHHHHHTCCCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC--------CHHHHH--HHHHHHHHHhhcc
Confidence            478888888 999999999999998622  21    1234566777 7777        666776  4444433322111


Q ss_pred             CCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCc
Q psy3020          74 KPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNH  136 (150)
Q Consensus        74 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~  136 (150)
                      ...    .+                 .-...+...+.++...|++..|-+.+++....+|...
T Consensus       189 ~l~----~~-----------------~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~  230 (282)
T PF14938_consen  189 NLL----KY-----------------SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA  230 (282)
T ss_dssp             CTT----GH-----------------HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred             ccc----ch-----------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence            110    00                 0023455667777889999999999999999999654

>KOG2053|consensus

Probab=96.57  E-value=0.04  Score=45.43  Aligned_cols=101  Identities=16%  Similarity=0.036  Sum_probs=69.6

Q ss_pred             HhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHH
Q psy3020           8 SYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMI   86 (150)
Q Consensus         8 ~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   86 (150)
                      ...++++.|+....+.++..|+-..+.---|.+ ..+|..        .++.   .+.+.+..-+.+             
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~--------~ea~---~~Le~~~~~~~~-------------   75 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKG--------DEAL---KLLEALYGLKGT-------------   75 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCc--------hhHH---HHHhhhccCCCC-------------
Confidence            356899999999999999999988776555666 677733        3333   222222211211             


Q ss_pred             HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHH
Q psy3020          87 KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFA  147 (150)
Q Consensus        87 ~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~  147 (150)
                              +      -..+..+-.++...+++++|+.+|++++..+|. ....+.+=.+|+
T Consensus        76 --------D------~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayv  121 (932)
T KOG2053|consen   76 --------D------DLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYV  121 (932)
T ss_pred             --------c------hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHH
Confidence                    1      455666778888999999999999999999998 444444444444

>KOG2796|consensus

Probab=96.55  E-value=0.033  Score=40.14  Aligned_cols=41  Identities=15%  Similarity=0.052  Sum_probs=23.4

Q ss_pred             hHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hhhh
Q psy3020           4 YSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQE   44 (150)
Q Consensus         4 g~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g   44 (150)
                      +..|.-.++|..|...|++.+..||.++-+....+.| ...|
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg  300 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLG  300 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHH
Confidence            3444455555566666666666666666555555555 5555

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.54  E-value=0.053  Score=40.09  Aligned_cols=138  Identities=13%  Similarity=0.067  Sum_probs=86.2

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCC----cHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCC-C
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPN----NEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTK-P   75 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~----~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~-~   75 (150)
                      .++.+..+.|+++-|...+.++...++.    .+.+....+.+ ...|        +-..|+  ..+...+....... .
T Consensus       151 ~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g--------~~~~Ai--~~L~~~~~~~~~~~~~  220 (352)
T PF02259_consen  151 KFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQG--------EQEEAI--QKLRELLKCRLSKNID  220 (352)
T ss_pred             HHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcC--------CHHHHH--HHHHHHHHHHhhhccc
Confidence            3567788999999999999999987632    45677777888 8888        334455  33333333111100 0


Q ss_pred             CCCChHHHHHH----HHHh-cCcchhhhHHHhHHHHHHHHHHHHh------cCHHHHHHHHHHHHhhcCCCcchhhcHHH
Q psy3020          76 FLSDPSYVQMI----KEIQ-KDPSLMTLEAKISLLKDKGNAALQA------NNFKEAIEAYSEAIKLDGTNHILFSNRSA  144 (150)
Q Consensus        76 ~~~~~~~~~~~----~~l~-~~~~~~~~~~~~~~~~~~g~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~n~a~  144 (150)
                      ...........    .... ...........+..+..+|......      +.+++++..|.++++++|+....|+..|.
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~  300 (352)
T PF02259_consen  221 SISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL  300 (352)
T ss_pred             cccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence            00000000000    0000 0000111113378888888888777      99999999999999999999999999998


Q ss_pred             HHHhc
Q psy3020         145 AFAKA  149 (150)
Q Consensus       145 ~~~~~  149 (150)
                      .+.+.
T Consensus       301 ~~~~~  305 (352)
T PF02259_consen  301 FNDKL  305 (352)
T ss_pred             HHHHH
Confidence            87654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=96.48  E-value=0.0031  Score=31.49  Aligned_cols=26  Identities=27%  Similarity=0.469  Sum_probs=22.7

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLD   27 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~   27 (150)
                      ++|.+|...|++++|+..+++++.+.
T Consensus         7 ~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    7 NLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            68999999999999999999999753

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.45  E-value=0.029  Score=33.62  Aligned_cols=67  Identities=10%  Similarity=0.204  Sum_probs=46.7

Q ss_pred             HHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhc
Q psy3020          15 ESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQK   91 (150)
Q Consensus        15 ~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~   91 (150)
                      ..+..++++++.+|+|.++.+.++.. ...|        +++.++  ..+...+..+++...-..+..+...+..+..
T Consensus         6 ~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g--------~~e~Al--~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    6 PDIAALEAALAANPDDLDARYALADALLAAG--------DYEEAL--DQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT---------HHHHH--HHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             ccHHHHHHHHHcCCCCHHHHHHHHHHHHHCC--------CHHHHH--HHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            35788999999999999999999999 8889        778888  8888888888776432111234444444443

>KOG0376|consensus

Probab=96.40  E-value=0.0031  Score=48.29  Aligned_cols=46  Identities=24%  Similarity=0.291  Sum_probs=23.1

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHH
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFA  147 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~  147 (150)
                      +..+.+++....+.++|.+|+..+.+|++++|....+|+.+|.+.+
T Consensus        38 a~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m   83 (476)
T KOG0376|consen   38 AIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM   83 (476)
T ss_pred             eeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence            4444444444445555555555555555555555555555544443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.36  E-value=0.01  Score=42.48  Aligned_cols=64  Identities=11%  Similarity=0.030  Sum_probs=50.5

Q ss_pred             ChhhHHHHhhCCHHHHHHHHHHhhccCCCcH---HHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCC
Q psy3020           1 MTTYSCLSYLGRYKESISTYEEGLKLDPNNE---QMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTK   74 (150)
Q Consensus         1 ~~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~---~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~   74 (150)
                      +|||.+++..|+|++|...|..+.+-.|+.+   ++++.+|.+ ..+|.        ..+|-  ..+...+.--|+..
T Consensus       182 yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~--------~d~A~--atl~qv~k~YP~t~  249 (262)
T COG1729         182 YWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN--------TDEAC--ATLQQVIKRYPGTD  249 (262)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC--------HHHHH--HHHHHHHHHCCCCH
Confidence            4899999999999999999999999888754   678899999 88884        44444  55666666666543

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.33  E-value=0.011  Score=29.42  Aligned_cols=30  Identities=30%  Similarity=0.595  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q psy3020         103 SLLKDKGNAALQANNFKEAIEAYSEAIKLD  132 (150)
Q Consensus       103 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~  132 (150)
                      ..+..+|.+-...++|++|++.|.+|+++-
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            457789999999999999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.32  E-value=0.12  Score=42.23  Aligned_cols=127  Identities=7%  Similarity=-0.033  Sum_probs=76.5

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhh--ccCCCCCCCC--
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQL--QLDPRTKPFL--   77 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l--~~~~~~~~~~--   77 (150)
                      +...|.+.|++++|.+.|++..   +.|...|..+... ...|        ...+|+  .-+.+..  ...|+...+.  
T Consensus       265 Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g--------~~~eA~--~lf~~M~~~g~~pd~~t~~~l  331 (697)
T PLN03081        265 LIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHG--------YSEEAL--CLYYEMRDSGVSIDQFTFSIM  331 (697)
T ss_pred             HHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCC--------CHHHHH--HHHHHHHHcCCCCCHHHHHHH
Confidence            5578899999999999999753   4577888888777 6777        444444  2222221  2334322210  


Q ss_pred             -------CC-hHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          78 -------SD-PSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        78 -------~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                             .. ....+....+.+..-    ......+..+...+.+.|++++|.+.|.+..+  | +...|..+...|.+.
T Consensus       332 l~a~~~~g~~~~a~~i~~~m~~~g~----~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~  404 (697)
T PLN03081        332 IRIFSRLALLEHAKQAHAGLIRTGF----PLDIVANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNH  404 (697)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhCC----CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHc
Confidence                   00 000011111100000    01145677888999999999999999998864  4 567788888777653

>KOG4507|consensus

Probab=96.29  E-value=0.019  Score=45.51  Aligned_cols=100  Identities=17%  Similarity=0.198  Sum_probs=70.5

Q ss_pred             HhhCCHHHHHHHHHHhhccCCCcHHH-HHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHH
Q psy3020           8 SYLGRYKESISTYEEGLKLDPNNEQM-KEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQM   85 (150)
Q Consensus         8 ~~~~~~~~A~~~~~~aL~~~p~~~~a-~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~   85 (150)
                      ...|+...|+.|+..|+-..|.-..+ ...|+.+ ...|..        ..|-  .-+..++.++..             
T Consensus       618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~--------~da~--~~l~q~l~~~~s-------------  674 (886)
T KOG4507|consen  618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLH--------LDAT--KLLLQALAINSS-------------  674 (886)
T ss_pred             eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhh--------ccHH--HHHHHHHhhccc-------------
Confidence            45688999999999999999965543 4567776 555522        1122  233333333321             


Q ss_pred             HHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHH
Q psy3020          86 IKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAA  145 (150)
Q Consensus        86 ~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~  145 (150)
                               .      +..+..+|+.+....+.++|++.|+.|+.++|+++..-..+-.+
T Consensus       675 ---------e------pl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i  719 (886)
T KOG4507|consen  675 ---------E------PLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI  719 (886)
T ss_pred             ---------C------chHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence                     1      66788899999999999999999999999999998766554433

>KOG3824|consensus

Probab=96.27  E-value=0.0087  Score=43.93  Aligned_cols=63  Identities=14%  Similarity=0.200  Sum_probs=48.6

Q ss_pred             hHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC
Q psy3020           4 YSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF   76 (150)
Q Consensus         4 g~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~   76 (150)
                      +.-....|+.++|...|+.||.++|+|++++..+|.. ..-+        ++.+|-  .-+.+++.++|.+.++
T Consensus       123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~--------~iv~AD--q~Y~~ALtisP~nseA  186 (472)
T KOG3824|consen  123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHN--------EIVEAD--QCYVKALTISPGNSEA  186 (472)
T ss_pred             HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhh--------hhHhhh--hhhheeeeeCCCchHH
Confidence            4455678999999999999999999999999999988 3323        344443  5666777788877764

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.25  E-value=0.074  Score=44.51  Aligned_cols=98  Identities=13%  Similarity=0.026  Sum_probs=66.3

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHH-----HHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQ-----MKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF   76 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~-----a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~   76 (150)
                      +|.++...|++++|...++++++..|....     +...++.+ ...|        ++.++.  ..+..++........ 
T Consensus       458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G--------~~~~A~--~~~~~al~~~~~~g~-  526 (903)
T PRK04841        458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG--------ELARAL--AMMQQTEQMARQHDV-  526 (903)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHHHhhhcc-
Confidence            467788999999999999999986554322     33455666 6677        555555  444433332221100 


Q ss_pred             CCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q psy3020          77 LSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLD  132 (150)
Q Consensus        77 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~  132 (150)
                                     ..      .....+..+|.+++..|++++|...+.+++++-
T Consensus       527 ---------------~~------~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  561 (903)
T PRK04841        527 ---------------YH------YALWSLLQQSEILFAQGFLQAAYETQEKAFQLI  561 (903)
T ss_pred             ---------------hH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence                           00      114567788999999999999999999999873

>KOG3785|consensus

Probab=96.14  E-value=0.062  Score=40.39  Aligned_cols=136  Identities=17%  Similarity=0.107  Sum_probs=83.5

Q ss_pred             ChhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCC-
Q psy3020           1 MTTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS-   78 (150)
Q Consensus         1 ~~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~-   78 (150)
                      +.|+..+.-.-.|++|++.|.++|.-+|+.......++.| ..+.        -+.-+.  .-+...++..|+...+.+ 
T Consensus       155 LSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlD--------Yydvsq--evl~vYL~q~pdStiA~NL  224 (557)
T KOG3785|consen  155 LSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLD--------YYDVSQ--EVLKVYLRQFPDSTIAKNL  224 (557)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcc--------hhhhHH--HHHHHHHHhCCCcHHHHHH
Confidence            3577778888899999999999999999988887788877 6666        222222  222233445555443210 


Q ss_pred             ----------ChHHHHHHHHHhcCcc-hhhh----------------------H--HH--hHHHHHHHHHHHHhcCHHHH
Q psy3020          79 ----------DPSYVQMIKEIQKDPS-LMTL----------------------E--AK--ISLLKDKGNAALQANNFKEA  121 (150)
Q Consensus        79 ----------~~~~~~~~~~l~~~~~-~~~~----------------------~--~~--~~~~~~~g~~~~~~~~~~~A  121 (150)
                                ......-+..+..+.+ ....                      |  .+  +++-.++..-+..+++..+|
T Consensus       225 kacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA  304 (557)
T KOG3785|consen  225 KACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEA  304 (557)
T ss_pred             HHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHH
Confidence                      0000111111111111 0001                      1  11  66677777777899999998


Q ss_pred             HHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         122 IEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       122 ~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      +..+.   +++|..|--|.-.|.++..+
T Consensus       305 ~~L~K---dl~PttP~EyilKgvv~aal  329 (557)
T KOG3785|consen  305 ISLCK---DLDPTTPYEYILKGVVFAAL  329 (557)
T ss_pred             HHHHh---hcCCCChHHHHHHHHHHHHh
Confidence            87654   68999998888888877653

>KOG4340|consensus

Probab=96.13  E-value=0.016  Score=42.47  Aligned_cols=112  Identities=13%  Similarity=0.161  Sum_probs=68.6

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhh--CChHHHHhhccCCCCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLF--SDPNIFVQLQLDPRTKPFLS   78 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~--~~~~~~~~l~~~~~~~~~~~   78 (150)
                      ++|-..++.|+|++|++-|+.|++...-++..-.+++.+ +..+        ++..|+  -+.-+.+.++..|+.-.-..
T Consensus       149 n~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~--------qyasALk~iSEIieRG~r~HPElgIGm~  220 (459)
T KOG4340|consen  149 NLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSR--------QYASALKHISEIIERGIRQHPELGIGMT  220 (459)
T ss_pred             cchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhh--------hHHHHHHHHHHHHHhhhhcCCccCccce
Confidence            356678899999999999999999999999988899988 8888        445554  22344556677775443110


Q ss_pred             C--hHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHH
Q psy3020          79 D--PSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYS  126 (150)
Q Consensus        79 ~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~  126 (150)
                      .  +++ +.   ++ ++..+-.-.-.+++..+.-+.++.|+++.|.+.++
T Consensus       221 tegiDv-rs---vg-Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt  265 (459)
T KOG4340|consen  221 TEGIDV-RS---VG-NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT  265 (459)
T ss_pred             eccCch-hc---cc-chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence            0  010 00   00 00000000004566666777777777777766544

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.13  E-value=0.024  Score=36.71  Aligned_cols=48  Identities=23%  Similarity=0.319  Sum_probs=41.2

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      ..++..++..+...|++++|++.+.+++.++|.+..+|..+-.+|..+
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~  109 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQ  109 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHC
Confidence            567777888889999999999999999999999999999988888765

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.09  E-value=0.14  Score=40.03  Aligned_cols=45  Identities=27%  Similarity=0.406  Sum_probs=37.9

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCC--cHHHHHHHHHH-Hhhhhc
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPN--NEQMKEAIKDV-RNQEMN   46 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~--~~~a~~~l~~~-~~~g~~   46 (150)
                      .+|+|..++|+.++|++.|...++..|.  +..++..|..+ ..++.+
T Consensus       264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Y  311 (539)
T PF04184_consen  264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAY  311 (539)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCH
Confidence            3789999999999999999999998875  56788888888 777733

The molecular function of this protein is uncertain.

>PLN03077 Protein ECB2; Provisional

Probab=96.01  E-value=0.099  Score=43.73  Aligned_cols=113  Identities=7%  Similarity=0.003  Sum_probs=69.9

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHh--hccCCCCCCCC--
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQ--LQLDPRTKPFL--   77 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~--l~~~~~~~~~~--   77 (150)
                      +-..|.+.|++++|.+.|+..    +.|...|..+... -..|        ...+|+  .-+.+-  ....|+...+.  
T Consensus       530 Li~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G--------~~~~A~--~lf~~M~~~g~~Pd~~T~~~l  595 (857)
T PLN03077        530 LLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHG--------KGSMAV--ELFNRMVESGVNPDEVTFISL  595 (857)
T ss_pred             HHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcC--------CHHHHH--HHHHHHHHcCCCCCcccHHHH
Confidence            456789999999999999986    5567788877766 6666        334444  333322  24566654421  


Q ss_pred             -----CCh---HHHHHHHHHh-cCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC
Q psy3020          78 -----SDP---SYVQMIKEIQ-KDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT  134 (150)
Q Consensus        78 -----~~~---~~~~~~~~l~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  134 (150)
                           ..+   .....+.... ..+-.    +....|..+...+.+.|++++|.+.+++. .+.|+
T Consensus       596 l~a~~~~g~v~ea~~~f~~M~~~~gi~----P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd  656 (857)
T PLN03077        596 LCACSRSGMVTQGLEYFHSMEEKYSIT----PNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD  656 (857)
T ss_pred             HHHHhhcChHHHHHHHHHHHHHHhCCC----CchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence                 000   1111111111 11000    22567888999999999999999999886 46675

>KOG0551|consensus

Probab=96.01  E-value=0.025  Score=41.85  Aligned_cols=48  Identities=21%  Similarity=0.313  Sum_probs=44.3

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      +..|.+++-+.+..|+|..|+..+++++.++|++..+++.-|.|++++
T Consensus       119 avLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eL  166 (390)
T KOG0551|consen  119 AVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLEL  166 (390)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHH
Confidence            677888999999999999999999999999999999999999998875

>KOG1941|consensus

Probab=95.97  E-value=0.047  Score=41.05  Aligned_cols=43  Identities=12%  Similarity=0.253  Sum_probs=32.2

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHH------HHHHHHH-Hhhh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQM------KEAIKDV-RNQE   44 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a------~~~l~~~-~~~g   44 (150)
                      .+|.++..++.++++++.|++|+++--++.+.      .-+|+.+ -.+.
T Consensus       127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~  176 (518)
T KOG1941|consen  127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK  176 (518)
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence            57899999999999999999999987666554      3455555 4444

>KOG2610|consensus

Probab=95.84  E-value=0.055  Score=40.35  Aligned_cols=45  Identities=13%  Similarity=0.074  Sum_probs=38.0

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hhhhhc
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMN   46 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~   46 (150)
                      +.+.++.+.|-|++|.+.-+++|+++|.+..+...++-+ .-.++.
T Consensus       180 myaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~  225 (491)
T KOG2610|consen  180 MYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRH  225 (491)
T ss_pred             HHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchh
Confidence            356788899999999999999999999999999999888 555533

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=95.73  E-value=0.17  Score=38.28  Aligned_cols=114  Identities=18%  Similarity=0.122  Sum_probs=62.3

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC-----
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL-----   77 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~-----   77 (150)
                      ++.-+...|..++|.+....+|+-.-|.. ...-+..+ ..+        +....+  ..+.+.++..|+.+..+     
T Consensus       269 ~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l-~~~--------d~~~l~--k~~e~~l~~h~~~p~L~~tLG~  336 (400)
T COG3071         269 YAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPRL-RPG--------DPEPLI--KAAEKWLKQHPEDPLLLSTLGR  336 (400)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHhhc-CCC--------CchHHH--HHHHHHHHhCCCChhHHHHHHH
Confidence            44556677888888888888877665543 22222222 111        222222  34444555556555321     


Q ss_pred             ---CChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q psy3020          78 ---SDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKL  131 (150)
Q Consensus        78 ---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~  131 (150)
                         .+..+.++-..++...   ...+....+..+|.++-+.|+..+|.+++++++.+
T Consensus       337 L~~k~~~w~kA~~~leaAl---~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         337 LALKNKLWGKASEALEAAL---KLRPSASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             HHHHhhHHHHHHHHHHHHH---hcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence               1111111111111100   00012678899999999999999999999999854

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.68  E-value=0.074  Score=31.84  Aligned_cols=46  Identities=17%  Similarity=0.291  Sum_probs=36.5

Q ss_pred             HHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCC
Q psy3020          84 QMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTN  135 (150)
Q Consensus        84 ~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~  135 (150)
                      .....+..+|.+      ..+...++..+...|++++|++.+-+.+..+|+.
T Consensus        10 al~~~~a~~P~D------~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen   10 ALEAALAANPDD------LDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHSTT-------HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             HHHHHHHcCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            334445666666      8899999999999999999999999999999876

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.62  E-value=0.62  Score=35.35  Aligned_cols=132  Identities=8%  Similarity=0.052  Sum_probs=79.9

Q ss_pred             hhHHHHh---hCCHHHHHHHHHH-hhccCCCcHHHHHHHHHH-HhhhhccC-CCCCchhhhhCChHHHHhhccCCCCCCC
Q psy3020           3 TYSCLSY---LGRYKESISTYEE-GLKLDPNNEQMKEAIKDV-RNQEMNDM-NRGDPFANLFSDPNIFVQLQLDPRTKPF   76 (150)
Q Consensus         3 lg~~~~~---~~~~~~A~~~~~~-aL~~~p~~~~a~~~l~~~-~~~g~~~~-~~~~~~~~a~~~~~~~~~l~~~~~~~~~   76 (150)
                      .|.++-.   .|+.++|+..+.. ...-++.+++.+--+|.+ ..+-.... .-.....+|+  .-|.++...+|+.+.-
T Consensus       185 yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi--~~Y~kgFe~~~~~Y~G  262 (374)
T PF13281_consen  185 YAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAI--EWYRKGFEIEPDYYSG  262 (374)
T ss_pred             HHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHH--HHHHHHHcCCccccch
Confidence            4667777   8999999999999 555666788888777887 44332110 1112467777  8888888888876652


Q ss_pred             CCC--------------hHHHH---HHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCc
Q psy3020          77 LSD--------------PSYVQ---MIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNH  136 (150)
Q Consensus        77 ~~~--------------~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~  136 (150)
                      .+-              ....+   .+..+-.................+..+..-.|++++|++.+++++.++|...
T Consensus       263 IN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W  339 (374)
T PF13281_consen  263 INAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW  339 (374)
T ss_pred             HHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence            110              00000   0001000000000012244445566677789999999999999999987554

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.55  E-value=0.017  Score=28.73  Aligned_cols=26  Identities=15%  Similarity=0.225  Sum_probs=23.5

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLD   27 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~   27 (150)
                      .||..-...++|+.|+++|+++|++.
T Consensus         6 ~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    6 LLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            47889999999999999999999864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.54  E-value=0.23  Score=36.08  Aligned_cols=121  Identities=9%  Similarity=-0.019  Sum_probs=64.4

Q ss_pred             HHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHH
Q psy3020           5 SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYV   83 (150)
Q Consensus         5 ~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~   83 (150)
                      ......+..+.|...|.+|++-.+....+|...|.+ +..+.       +...|.  .-+...++..|....+..  .|.
T Consensus         9 ~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~-------d~~~A~--~Ife~glk~f~~~~~~~~--~Y~   77 (280)
T PF05843_consen    9 RFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNK-------DPKRAR--KIFERGLKKFPSDPDFWL--EYL   77 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS--------HHHHH--HHHHHHHHHHTT-HHHHH--HHH
T ss_pred             HHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC-------CHHHHH--HHHHHHHHHCCCCHHHHH--HHH
Confidence            344455567777888888876666667777777777 55432       223244  444455555555443210  111


Q ss_pred             HHHHHHhcCcchhhh-----------HH-HhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcc
Q psy3020          84 QMIKEIQKDPSLMTL-----------EA-KISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHI  137 (150)
Q Consensus        84 ~~~~~l~~~~~~~~~-----------~~-~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~  137 (150)
                      ..+..+. +......           .. -...|......-.+-|+.+...+.+.++.+..|++..
T Consensus        78 ~~l~~~~-d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~  142 (280)
T PF05843_consen   78 DFLIKLN-DINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS  142 (280)
T ss_dssp             HHHHHTT--HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred             HHHHHhC-cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence            1111110 0000000           01 1345666666667889999999999999999998543

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.46  E-value=0.3  Score=34.14  Aligned_cols=48  Identities=17%  Similarity=0.123  Sum_probs=37.5

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCc-chhhcHHHHHHhc
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNH-ILFSNRSAAFAKA  149 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~n~a~~~~~~  149 (150)
                      ...++.+|.+.++.|++++|++.|.+.+..-..+. ....++|.=.-++
T Consensus       165 ~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~w~~  213 (214)
T PF09986_consen  165 ATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQWQL  213 (214)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh
Confidence            67788899999999999999999999998655443 4666666655444

>KOG3081|consensus

Probab=95.45  E-value=0.087  Score=37.91  Aligned_cols=43  Identities=26%  Similarity=0.321  Sum_probs=39.4

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hhhh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQE   44 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g   44 (150)
                      ..+.|+..+|||++|....+.||.-+|++++.+-++..+ ...|
T Consensus       212 G~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~G  255 (299)
T KOG3081|consen  212 GQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLG  255 (299)
T ss_pred             cHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC
Confidence            568899999999999999999999999999999988877 6667

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.44  E-value=0.46  Score=32.31  Aligned_cols=49  Identities=20%  Similarity=0.213  Sum_probs=42.4

Q ss_pred             HhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhcC
Q psy3020         101 KISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKAI  150 (150)
Q Consensus       101 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~~  150 (150)
                      +..+-..+|-..++.|+|.+|...|..... |.+.|..-.+|+.+.+.+|
T Consensus       166 R~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mldlI  214 (221)
T COG4649         166 RHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLDLI  214 (221)
T ss_pred             HHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHHHH
Confidence            366667799999999999999999998887 7888888899999988765

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=95.33  E-value=0.021  Score=28.09  Aligned_cols=29  Identities=28%  Similarity=0.232  Sum_probs=23.4

Q ss_pred             hhhHHHHhhCCHHHHHHH--HHHhhccCCCc
Q psy3020           2 TTYSCLSYLGRYKESIST--YEEGLKLDPNN   30 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~--~~~aL~~~p~~   30 (150)
                      .+|..+...|++++|++.  |.-+..++|.|
T Consensus         6 ~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    6 GLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            578899999999999999  55888888865

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PRK10941 hypothetical protein; Provisional

Probab=95.32  E-value=0.054  Score=39.16  Aligned_cols=48  Identities=17%  Similarity=0.250  Sum_probs=42.2

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      ..-+.++-.++.+.++++.|+++.+..+.++|+++.-+..||.+|.++
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL  228 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQL  228 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            344556667778999999999999999999999999999999999876

>KOG1915|consensus

Probab=95.17  E-value=0.29  Score=38.23  Aligned_cols=100  Identities=15%  Similarity=0.195  Sum_probs=69.6

Q ss_pred             HhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHH
Q psy3020           8 SYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMI   86 (150)
Q Consensus         8 ~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   86 (150)
                      .++++++.+...|++-|+-.|.|-.+|...|.+ ..+|+++     .....+     .-++. .|.    ++        
T Consensus       448 lqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgdtd-----RaRaif-----elAi~-qp~----ld--------  504 (677)
T KOG1915|consen  448 LQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTD-----RARAIF-----ELAIS-QPA----LD--------  504 (677)
T ss_pred             HHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHH-----HHHHHH-----HHHhc-Ccc----cc--------
Confidence            467899999999999999999999999999999 9999653     222111     11111 111    10        


Q ss_pred             HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHH
Q psy3020          87 KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSA  144 (150)
Q Consensus        87 ~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~  144 (150)
                                   .....|......-...|.++.|-..|++.|+..+... +|...|.
T Consensus       505 -------------mpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~  548 (677)
T KOG1915|consen  505 -------------MPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAK  548 (677)
T ss_pred             -------------cHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHH
Confidence                         0033455555566788999999999999999998554 6655543

>KOG2610|consensus

Probab=95.14  E-value=0.25  Score=36.98  Aligned_cols=106  Identities=8%  Similarity=-0.020  Sum_probs=65.9

Q ss_pred             HHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhcc-CCCCCCCCCChHHH
Q psy3020           6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQL-DPRTKPFLSDPSYV   83 (150)
Q Consensus         6 ~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~-~~~~~~~~~~~~~~   83 (150)
                      .+...|++.+|...+++.|+--|.+.-++...-+. ..+|...     ...     +.+.+.+.. +|+.+-+       
T Consensus       112 i~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~-----~~k-----~ai~kIip~wn~dlp~~-------  174 (491)
T KOG2610|consen  112 ILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQI-----GKK-----NAIEKIIPKWNADLPCY-------  174 (491)
T ss_pred             HhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchh-----hhh-----hHHHHhccccCCCCcHH-------
Confidence            34556788888888899999888887776655555 5555321     111     222222222 3332210       


Q ss_pred             HHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHH
Q psy3020          84 QMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF  146 (150)
Q Consensus        84 ~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~  146 (150)
                                        ....-..+-.+..-|-|++|.+.-.+++++||.+..+.+-.+.++
T Consensus       175 ------------------sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVl  219 (491)
T KOG2610|consen  175 ------------------SYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVL  219 (491)
T ss_pred             ------------------HHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHH
Confidence                              111122333456789999999999999999999887776665544

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.94  E-value=0.047  Score=38.51  Aligned_cols=61  Identities=18%  Similarity=0.189  Sum_probs=51.2

Q ss_pred             HHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCC
Q psy3020           5 SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKP   75 (150)
Q Consensus         5 ~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~   75 (150)
                      ....+.++.+.|.+.|.+||.+-|+....|..++.. ...|        ++..|.  ..+.+.++++|.+..
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag--------~~daAa--~a~~~~L~ldp~D~~   64 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAG--------EFDAAA--AAYEEVLELDPEDHG   64 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcc--------cHHHHH--HHHHHHHcCCccccc
Confidence            445678899999999999999999999999999999 8888        555555  677888888987653

>KOG1310|consensus

Probab=94.84  E-value=0.14  Score=40.44  Aligned_cols=94  Identities=15%  Similarity=0.065  Sum_probs=69.6

Q ss_pred             HHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHH
Q psy3020           7 LSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQM   85 (150)
Q Consensus         7 ~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~   85 (150)
                      -+..+....|+.+|.++++--|+..+.+...+.+ ..-+ +.  .  +.--|+  -++..+++++|..            
T Consensus       384 ~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRk-W~--~--d~~~Al--rDch~Alrln~s~------------  444 (758)
T KOG1310|consen  384 GLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRK-WR--G--DSYLAL--RDCHVALRLNPSI------------  444 (758)
T ss_pred             hhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhh-cc--c--cHHHHH--HhHHhhccCChHH------------
Confidence            3445667789999999999999999998888776 3222 11  0  222233  4666666666632            


Q ss_pred             HHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCC
Q psy3020          86 IKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTN  135 (150)
Q Consensus        86 ~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~  135 (150)
                                      ..+|+.++.++...+++.+|+.+...+...+|.+
T Consensus       445 ----------------~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd  478 (758)
T KOG1310|consen  445 ----------------QKAHFRLARALNELTRYLEALSCHWALQMSFPTD  478 (758)
T ss_pred             ----------------HHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence                            7889999999999999999999999998899954

>PRK04841 transcriptional regulator MalT; Provisional

Probab=94.59  E-value=0.38  Score=40.36  Aligned_cols=100  Identities=13%  Similarity=0.082  Sum_probs=64.3

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCC--------cHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPN--------NEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPR   72 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~--------~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~   72 (150)
                      .+|.++...|++++|...+++++.+-..        ....+..++.+ ...|        ++.++.  ..+...+.....
T Consensus       536 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G--------~~~~A~--~~~~~al~~~~~  605 (903)
T PRK04841        536 QQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA--------RLDEAE--QCARKGLEVLSN  605 (903)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc--------CHHHHH--HHHHHhHHhhhc
Confidence            3577888889999999999988885221        22334456777 6777        444444  333333322211


Q ss_pred             CCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC
Q psy3020          73 TKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT  134 (150)
Q Consensus        73 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  134 (150)
                      ...                 .      .....+..+|.+....|++++|.+.+.+++.+.+.
T Consensus       606 ~~~-----------------~------~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~  644 (903)
T PRK04841        606 YQP-----------------Q------QQLQCLAMLAKISLARGDLDNARRYLNRLENLLGN  644 (903)
T ss_pred             cCc-----------------h------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence            000                 0      01456677888999999999999999999887543

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=94.48  E-value=0.078  Score=23.77  Aligned_cols=24  Identities=17%  Similarity=-0.010  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHH
Q psy3020         103 SLLKDKGNAALQANNFKEAIEAYS  126 (150)
Q Consensus       103 ~~~~~~g~~~~~~~~~~~A~~~~~  126 (150)
                      .+...+|.++...|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            456789999999999999998875

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG2396|consensus

Probab=94.46  E-value=0.45  Score=37.30  Aligned_cols=87  Identities=8%  Similarity=0.103  Sum_probs=60.0

Q ss_pred             HHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcc
Q psy3020          16 SISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPS   94 (150)
Q Consensus        16 A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~   94 (150)
                      =...|++|+.-=|.++..|...... ...+.        +.+.-  .-+...+..+|+.                     
T Consensus        90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~--------~~~v~--ki~~~~l~~Hp~~---------------------  138 (568)
T KOG2396|consen   90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKT--------YGEVK--KIFAAMLAKHPNN---------------------  138 (568)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcc--------hhHHH--HHHHHHHHhCCCC---------------------
Confidence            3467788888777778777766555 44441        11111  3334445555543                     


Q ss_pred             hhhhHHHhHHHHHHHHHHHHhcC-HHHHHHHHHHHHhhcCCCcchhh
Q psy3020          95 LMTLEAKISLLKDKGNAALQANN-FKEAIEAYSEAIKLDGTNHILFS  140 (150)
Q Consensus        95 ~~~~~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~  140 (150)
                             +..|..-+...+..+. .+.|-..|.++|..+|++|.+|.
T Consensus       139 -------~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~  178 (568)
T KOG2396|consen  139 -------PDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK  178 (568)
T ss_pred             -------chhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence                   6778888877887666 88999999999999999998875

>KOG3364|consensus

Probab=94.44  E-value=0.12  Score=33.50  Aligned_cols=38  Identities=24%  Similarity=0.239  Sum_probs=32.7

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV   40 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~   40 (150)
                      |+..+.++++|+.|+...+..|+.+|+|..+..-.-.+
T Consensus        77 LAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~~i  114 (149)
T KOG3364|consen   77 LAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKETI  114 (149)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence            67788999999999999999999999999986544444

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=94.38  E-value=0.4  Score=34.85  Aligned_cols=34  Identities=12%  Similarity=0.082  Sum_probs=17.9

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCC
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTN  135 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~  135 (150)
                      ...|......+...|+.+.|-..|++++..-|..
T Consensus        70 ~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~  103 (280)
T PF05843_consen   70 PDFWLEYLDFLIKLNDINNARALFERAISSLPKE  103 (280)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCch
Confidence            4445555555555566666666666665554443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=94.24  E-value=0.13  Score=23.70  Aligned_cols=30  Identities=17%  Similarity=0.259  Sum_probs=26.4

Q ss_pred             CCHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q psy3020          11 GRYKESISTYEEGLKLDPNNEQMKEAIKDV   40 (150)
Q Consensus        11 ~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~   40 (150)
                      |+++.|...|++++...|.++..|...+..
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~   30 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEF   30 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            568899999999999999999999887654

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG1915|consensus

Probab=94.21  E-value=0.6  Score=36.60  Aligned_cols=56  Identities=13%  Similarity=0.066  Sum_probs=40.3

Q ss_pred             HHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCC
Q psy3020           7 LSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPR   72 (150)
Q Consensus         7 ~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~   72 (150)
                      =..++++..|.+.|++||..|..|...|...+.+ ..-.        ++..|-  .-+.+++.+-|.
T Consensus        83 Eesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk--------~vNhAR--Nv~dRAvt~lPR  139 (677)
T KOG1915|consen   83 EESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNK--------QVNHAR--NVWDRAVTILPR  139 (677)
T ss_pred             HHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhh--------hHhHHH--HHHHHHHHhcch
Confidence            3456788899999999999999999999999888 4444        333333  334445555564

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=94.12  E-value=0.61  Score=39.56  Aligned_cols=107  Identities=9%  Similarity=0.035  Sum_probs=68.4

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHH---HHHHH--HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKE---AIKDV--RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF   76 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~---~l~~~--~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~   76 (150)
                      .+..++...+.|+.|+..|.+.-..=|+-.+.+.   ..|-.  ....... .+ ..+.+|+  ..+             
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~--~~~-------------  542 (932)
T PRK13184        480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQG-DP-RDFTQAL--SEF-------------  542 (932)
T ss_pred             cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcC-Ch-HHHHHHH--HHH-------------
Confidence            3567888999999999999999998888766543   33322  1111000 00 1222232  111             


Q ss_pred             CCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhc
Q psy3020          77 LSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSN  141 (150)
Q Consensus        77 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n  141 (150)
                                ..+-..+..      +-.|..++-+|...|+|+|=+++|.-|+..-|++|..-.-
T Consensus       543 ----------~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  591 (932)
T PRK13184        543 ----------SYLHGGVGA------PLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRL  591 (932)
T ss_pred             ----------HHhcCCCCC------chHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHH
Confidence                      122233433      5556666667789999999999999999999998865443

>KOG1586|consensus

Probab=93.80  E-value=0.8  Score=32.64  Aligned_cols=35  Identities=23%  Similarity=0.332  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcch
Q psy3020         104 LLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHIL  138 (150)
Q Consensus       104 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~  138 (150)
                      .+...+......++|++|++.|++...-.-+|+.+
T Consensus       156 C~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL  190 (288)
T KOG1586|consen  156 CLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL  190 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence            34444555568899999999999998877666544

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=93.79  E-value=0.11  Score=26.65  Aligned_cols=28  Identities=11%  Similarity=0.162  Sum_probs=24.4

Q ss_pred             ChhhHHHHhhCCHHHHHHHHHHhhccCCC
Q psy3020           1 MTTYSCLSYLGRYKESISTYEEGLKLDPN   29 (150)
Q Consensus         1 ~~lg~~~~~~~~~~~A~~~~~~aL~~~p~   29 (150)
                      +.++.+|..+|+++.|.+.+++++. +++
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~-~~~   30 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE-EGD   30 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH-cCC
Confidence            4689999999999999999999994 444

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=93.21  E-value=1.5  Score=32.57  Aligned_cols=24  Identities=4%  Similarity=0.156  Sum_probs=21.5

Q ss_pred             HHHHHHhhccCCCcHHHHHHHHHH
Q psy3020          17 ISTYEEGLKLDPNNEQMKEAIKDV   40 (150)
Q Consensus        17 ~~~~~~aL~~~p~~~~a~~~l~~~   40 (150)
                      ...|++.++-+|.|.++|..+...
T Consensus         5 ~~el~~~v~~~P~di~~Wl~li~~   28 (321)
T PF08424_consen    5 TAELNRRVRENPHDIEAWLELIEF   28 (321)
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHH
Confidence            356899999999999999999887

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=92.96  E-value=1.4  Score=27.46  Aligned_cols=103  Identities=10%  Similarity=0.049  Sum_probs=58.4

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHH---HHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCC
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQM---KEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS   78 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a---~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~   78 (150)
                      .+..++..|++-+|++..+..+..++++...   +..-|.+ ..+...-                     -||+.+..+-
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~t---------------------en~d~k~~yL   60 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKT---------------------ENPDVKFRYL   60 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhc---------------------cCchHHHHHH
Confidence            3567899999999999999999999987743   3333555 4433210                     0222111000


Q ss_pred             ChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q psy3020          79 DPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLD  132 (150)
Q Consensus        79 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~  132 (150)
                      ...+...-+...-.|..      +..++.+|.-+--..-|++++...+++|.+.
T Consensus        61 l~sve~~s~a~~Lsp~~------A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   61 LGSVECFSRAVELSPDS------AHSLFELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             HHhHHHHHHHhccChhH------HHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            00111111112223322      6667777766655666778888888877653

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=92.75  E-value=0.26  Score=22.58  Aligned_cols=29  Identities=14%  Similarity=0.164  Sum_probs=24.6

Q ss_pred             cCHHHHHHHHHHHHhhcCCCcchhhcHHH
Q psy3020         116 NNFKEAIEAYSEAIKLDGTNHILFSNRSA  144 (150)
Q Consensus       116 ~~~~~A~~~~~~al~~~p~~~~~~~n~a~  144 (150)
                      |+++.|...|++++...|.++..|...+.
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~   29 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAE   29 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence            56788999999999999999988876544

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG1308|consensus

Probab=92.42  E-value=0.071  Score=39.61  Aligned_cols=44  Identities=11%  Similarity=0.073  Sum_probs=38.6

Q ss_pred             hHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hhhhhcc
Q psy3020           4 YSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMND   47 (150)
Q Consensus         4 g~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~   47 (150)
                      |.++.+++++..|+.+|..|+.++||...-+.-.+.. +.+|.+.
T Consensus       155 ~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e  199 (377)
T KOG1308|consen  155 ASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWE  199 (377)
T ss_pred             cceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchH
Confidence            5678899999999999999999999999888888888 8888553

>KOG0530|consensus

Probab=92.37  E-value=3.2  Score=30.18  Aligned_cols=120  Identities=12%  Similarity=0.165  Sum_probs=63.5

Q ss_pred             HHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHH
Q psy3020           7 LSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQM   85 (150)
Q Consensus         7 ~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~   85 (150)
                      +....+-..|+..-..+|.++|.|..+|.-.-.+ ..++.       ++.+-+  .-+.+...-+|.+...-   +..+.
T Consensus        53 ~~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~-------dL~~El--~~l~eI~e~npKNYQvW---HHRr~  120 (318)
T KOG0530|consen   53 IAKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMS-------DLNKEL--EYLDEIIEDNPKNYQVW---HHRRV  120 (318)
T ss_pred             HhccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHH-------HHHHHH--HHHHHHHHhCccchhHH---HHHHH
Confidence            3444566789999999999999999999877766 65553       222222  23333345556555421   12222


Q ss_pred             HHHHhcCcchhhh----------H-HHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchh
Q psy3020          86 IKEIQKDPSLMTL----------E-AKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILF  139 (150)
Q Consensus        86 ~~~l~~~~~~~~~----------~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  139 (150)
                      +-.+-.+|+. .+          + +..-+|..+-+++..-+.|+.=+.+..+.|+.|--|-.+|
T Consensus       121 ive~l~d~s~-rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAW  184 (318)
T KOG0530|consen  121 IVELLGDPSF-RELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAW  184 (318)
T ss_pred             HHHHhcCccc-chHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchh
Confidence            2222223331 11          0 1245555555555555555555555555555544444443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=92.15  E-value=4.7  Score=31.60  Aligned_cols=27  Identities=7%  Similarity=0.108  Sum_probs=20.6

Q ss_pred             HhhCC-HHHHHHHHHHhhccCCCcHHHH
Q psy3020           8 SYLGR-YKESISTYEEGLKLDPNNEQMK   34 (150)
Q Consensus         8 ~~~~~-~~~A~~~~~~aL~~~p~~~~a~   34 (150)
                      -+.|. -++|+..++.+++..|.+.+..
T Consensus       390 W~~g~~dekalnLLk~il~ft~yD~ec~  417 (549)
T PF07079_consen  390 WEIGQCDEKALNLLKLILQFTNYDIECE  417 (549)
T ss_pred             HhcCCccHHHHHHHHHHHHhccccHHHH
Confidence            34444 7789999999999998888654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=92.04  E-value=0.36  Score=31.47  Aligned_cols=43  Identities=16%  Similarity=0.196  Sum_probs=35.5

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hhhhh
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEM   45 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~   45 (150)
                      .+...+..|+|.-|++..+.++..||+|.++..-.+++ ..+|.
T Consensus        76 ~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~  119 (141)
T PF14863_consen   76 RAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY  119 (141)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence            45667789999999999999999999999999999998 88884

>KOG3364|consensus

Probab=91.87  E-value=0.29  Score=31.73  Aligned_cols=41  Identities=5%  Similarity=0.063  Sum_probs=35.4

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcH
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNR  142 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~  142 (150)
                      -+..+.++-.+++.++|+.++++.+..++..|+|..+.-..
T Consensus        71 Re~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk  111 (149)
T KOG3364|consen   71 RECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK  111 (149)
T ss_pred             hhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            56677788889999999999999999999999998775443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=91.81  E-value=3.1  Score=28.82  Aligned_cols=45  Identities=9%  Similarity=0.053  Sum_probs=37.1

Q ss_pred             ChhhHHHHhhCCHHHHHHHHHHhhccCCCc--HHHHHHHHHH-Hhhhh
Q psy3020           1 MTTYSCLSYLGRYKESISTYEEGLKLDPNN--EQMKEAIKDV-RNQEM   45 (150)
Q Consensus         1 ~~lg~~~~~~~~~~~A~~~~~~aL~~~p~~--~~a~~~l~~~-~~~g~   45 (150)
                      +.++.+.+..+++.+|...++...+-+|..  +..+..++.+ ...|.
T Consensus       128 LglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~  175 (251)
T COG4700         128 LGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGK  175 (251)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCC
Confidence            357889999999999999999999999974  4556667777 77773

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=91.47  E-value=0.5  Score=34.13  Aligned_cols=63  Identities=10%  Similarity=0.029  Sum_probs=51.9

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCC
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKP   75 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~   75 (150)
                      +=.++...++++.|+.+-++.|.++|++++-+...|-+ ..+|        +...|+  .++...+..-|+...
T Consensus       187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~--------c~~vAl--~dl~~~~~~~P~~~~  250 (269)
T COG2912         187 LKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLG--------CYHVAL--EDLSYFVEHCPDDPI  250 (269)
T ss_pred             HHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcC--------CchhhH--HHHHHHHHhCCCchH
Confidence            34578889999999999999999999999999999999 8999        666677  677666666776543

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=91.33  E-value=1.3  Score=31.40  Aligned_cols=36  Identities=22%  Similarity=0.325  Sum_probs=29.7

Q ss_pred             HHhHHHHHHHHHHH---------HhcCHHHHHHHHHHHHhhcCCC
Q psy3020         100 AKISLLKDKGNAAL---------QANNFKEAIEAYSEAIKLDGTN  135 (150)
Q Consensus       100 ~~~~~~~~~g~~~~---------~~~~~~~A~~~~~~al~~~p~~  135 (150)
                      .++.-++..|..+.         ..++...|+..+.+|+++||+.
T Consensus       167 vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~  211 (230)
T PHA02537        167 VRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC  211 (230)
T ss_pred             HHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence            44778888888884         4568889999999999999964

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=91.21  E-value=2.6  Score=26.84  Aligned_cols=100  Identities=12%  Similarity=0.136  Sum_probs=58.3

Q ss_pred             HHHHhhCCHHHHHHHHHHhhccCCCcH------------HHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCC
Q psy3020           5 SCLSYLGRYKESISTYEEGLKLDPNNE------------QMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDP   71 (150)
Q Consensus         5 ~~~~~~~~~~~A~~~~~~aL~~~p~~~------------~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~   71 (150)
                      .-....|-|++|...|.+|.++..+-+            -.|-.|+.. ..+|        .+.+++  .+...+|.   
T Consensus        17 e~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lg--------ry~e~L--~sA~~aL~---   83 (144)
T PF12968_consen   17 ERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLG--------RYDECL--QSADRALR---   83 (144)
T ss_dssp             HHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT---------HHHHH--HHHHHHHH---
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhc--------cHHHHH--HHHHHHHH---
Confidence            334566889999999999998654322            245566666 7778        555555  34333332   


Q ss_pred             CCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q psy3020          72 RTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKL  131 (150)
Q Consensus        72 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~  131 (150)
                                +...-..+.++...    .=..+-.+++..+-..|+.++|+..|+.+-+.
T Consensus        84 ----------YFNRRGEL~qdeGk----lWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   84 ----------YFNRRGELHQDEGK----LWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             ----------HHHHH--TTSTHHH----HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ----------HHhhccccccccch----hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence                      22222223333211    00233456788888999999999999998653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=91.06  E-value=5.8  Score=31.97  Aligned_cols=31  Identities=19%  Similarity=-0.003  Sum_probs=26.9

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhhcCCCcch
Q psy3020         108 KGNAALQANNFKEAIEAYSEAIKLDGTNHIL  138 (150)
Q Consensus       108 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~  138 (150)
                      +|+.+...|+..++.....+++++.|.++..
T Consensus       148 ~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~  178 (620)
T COG3914         148 LGRYLKLLGRTAEAELALERAVDLLPKYPRV  178 (620)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhhhhhhhh
Confidence            6888888899999999999999999988544

>KOG0529|consensus

Probab=90.65  E-value=3.6  Score=31.59  Aligned_cols=105  Identities=20%  Similarity=0.164  Sum_probs=69.3

Q ss_pred             CCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHH
Q psy3020          11 GRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEI   89 (150)
Q Consensus        11 ~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l   89 (150)
                      .-+++-+..-..+|+++|+...+|..+.-+ ...+..      ....-+  .-+.+.++.||.+.-.-   .+.+.+-  
T Consensus        89 ~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~------~~~~EL--~lcek~L~~D~RNfh~W---~YRRfV~--  155 (421)
T KOG0529|consen   89 ALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS------DWNTEL--QLCEKALKQDPRNFHAW---HYRRFVV--  155 (421)
T ss_pred             HhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc------hHHHHH--HHHHHHHhcCcccccch---HHHHHHH--
Confidence            345677888899999999999999988877 544421      233333  45666777777654321   1222211  


Q ss_pred             hcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHH
Q psy3020          90 QKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFA  147 (150)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~  147 (150)
                                         +.+-.......+=+++.+++|..|+.|-.+|++|..++-
T Consensus       156 -------------------~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~  194 (421)
T KOG0529|consen  156 -------------------EQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS  194 (421)
T ss_pred             -------------------HHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence                               111112234667788999999999999999999988764

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=90.57  E-value=0.59  Score=21.08  Aligned_cols=28  Identities=18%  Similarity=0.226  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q psy3020         104 LLKDKGNAALQANNFKEAIEAYSEAIKL  131 (150)
Q Consensus       104 ~~~~~g~~~~~~~~~~~A~~~~~~al~~  131 (150)
                      .|..+-..+.+.|++++|.+.|.+..+.
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~   29 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRER   29 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence            4677788899999999999999988764

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG2471|consensus

Probab=90.54  E-value=0.31  Score=38.24  Aligned_cols=40  Identities=8%  Similarity=0.037  Sum_probs=38.2

Q ss_pred             ChhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q psy3020           1 MTTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV   40 (150)
Q Consensus         1 ~~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~   40 (150)
                      +++|..|.+.|++..|.++|.++.+.--.|+..|..++.+
T Consensus       339 YNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEc  378 (696)
T KOG2471|consen  339 YNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAEC  378 (696)
T ss_pred             HhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            4789999999999999999999999999999999999997

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=90.40  E-value=1.2  Score=29.02  Aligned_cols=48  Identities=19%  Similarity=0.194  Sum_probs=39.7

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      .+.....+...+..|+|.-|.+..+.++..+|+|..+..-++.+|-++
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~l  117 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQL  117 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence            566777888889999999999999999999999999999888888654

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=90.32  E-value=1.6  Score=25.48  Aligned_cols=41  Identities=7%  Similarity=0.004  Sum_probs=33.1

Q ss_pred             hHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH----Hhhh
Q psy3020           4 YSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV----RNQE   44 (150)
Q Consensus         4 g~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~----~~~g   44 (150)
                      |.-+++..+.++|+..+.++|+..++..+-+..+|.+    ..+|
T Consensus        13 GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~G   57 (80)
T PF10579_consen   13 GLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWG   57 (80)
T ss_pred             HHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHH
Confidence            4446788899999999999999999988877766654    4555

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=90.24  E-value=4.2  Score=27.50  Aligned_cols=100  Identities=15%  Similarity=0.126  Sum_probs=56.7

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcH---HHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNE---QMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~---~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~   77 (150)
                      .+|.-|.+.|++++|+++|.++.+-..+..   +..+.+..+ ...+++        ..+.  .                
T Consensus        41 ~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~--------~~v~--~----------------   94 (177)
T PF10602_consen   41 DLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDW--------SHVE--K----------------   94 (177)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCH--------HHHH--H----------------
Confidence            478899999999999999999877543322   344455555 555533        2221  1                


Q ss_pred             CChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q psy3020          78 SDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDG  133 (150)
Q Consensus        78 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p  133 (150)
                          +...+..+...+.+....  ...-...|......++|.+|-+.|..++.-..
T Consensus        95 ----~i~ka~~~~~~~~d~~~~--nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~  144 (177)
T PF10602_consen   95 ----YIEKAESLIEKGGDWERR--NRLKVYEGLANLAQRDFKEAAELFLDSLSTFT  144 (177)
T ss_pred             ----HHHHHHHHHhccchHHHH--HHHHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence                111111111111111111  22223345556678999999999988866554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=90.16  E-value=1.5  Score=29.27  Aligned_cols=48  Identities=8%  Similarity=-0.083  Sum_probs=41.5

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      +..-..-|+++...|+|.+|+..++...+-.|..+.+--.++.|+..+
T Consensus        44 ~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~   91 (160)
T PF09613_consen   44 PELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL   91 (160)
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence            556677788999999999999999999999999998888888888654

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=90.13  E-value=0.97  Score=28.16  Aligned_cols=41  Identities=22%  Similarity=0.327  Sum_probs=32.7

Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhhcCCCc---chhhcHHHHHHh
Q psy3020         108 KGNAALQANNFKEAIEAYSEAIKLDGTNH---ILFSNRSAAFAK  148 (150)
Q Consensus       108 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~n~a~~~~~  148 (150)
                      ++..++.+|++-+|++..+..+..++++.   .++.--|.++.+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~   45 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYK   45 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHH
Confidence            35667899999999999999999999988   455555666554

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=90.09  E-value=6.2  Score=29.94  Aligned_cols=38  Identities=13%  Similarity=0.036  Sum_probs=32.5

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC-Ccchh
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT-NHILF  139 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~  139 (150)
                      ..++......+.++|-+.-|.+.++-.+.+||. ||..-
T Consensus       103 flal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~  141 (360)
T PF04910_consen  103 FLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGV  141 (360)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchh
Confidence            667777778888999999999999999999999 66543

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG2053|consensus

Probab=90.06  E-value=10  Score=32.17  Aligned_cols=59  Identities=17%  Similarity=0.112  Sum_probs=43.9

Q ss_pred             hHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCC
Q psy3020           4 YSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPR   72 (150)
Q Consensus         4 g~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~   72 (150)
                      |-.++++|+.++|..+++..=..-|++...+..+..+ ..++        +..+++  .-+.+....+|.
T Consensus        50 aLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~--------~~d~~~--~~Ye~~~~~~P~  109 (932)
T KOG2053|consen   50 ALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLG--------KLDEAV--HLYERANQKYPS  109 (932)
T ss_pred             HHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHh--------hhhHHH--HHHHHHHhhCCc
Confidence            5677888999999977776666666777777788888 8888        666777  666666666775

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=89.94  E-value=0.7  Score=32.82  Aligned_cols=36  Identities=28%  Similarity=0.332  Sum_probs=33.2

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcc
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHI  137 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~  137 (150)
                      ...|+.+|...-+.|+++.|.+.|++.+++||.+..
T Consensus        29 ~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976          29 AAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             hhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            778999999999999999999999999999998753

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=89.92  E-value=1.2  Score=32.86  Aligned_cols=43  Identities=21%  Similarity=0.202  Sum_probs=39.1

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hhhhh
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEM   45 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~   45 (150)
                      .+..|...|.+.+|++..++++.+||=+...+..+-.+ ..+|+
T Consensus       285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD  328 (361)
T COG3947         285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGD  328 (361)
T ss_pred             HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhcc
Confidence            46789999999999999999999999999999999888 88884

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.77  E-value=1.3  Score=25.58  Aligned_cols=38  Identities=18%  Similarity=0.113  Sum_probs=24.2

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHh-------hcCCCcchh
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIK-------LDGTNHILF  139 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~  139 (150)
                      +..+..++.-+=+.|++++|+.+|+++++       ..|+++...
T Consensus         6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~   50 (75)
T cd02682           6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRL   50 (75)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHH
Confidence            33444455555577888888877777765       567765443

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF12854 PPR_1: PPR repeat

Probab=89.60  E-value=0.84  Score=21.76  Aligned_cols=27  Identities=19%  Similarity=0.213  Sum_probs=23.7

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHH
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEA  128 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~a  128 (150)
                      ...|..+-..+.+.|+.++|++.|.+.
T Consensus         7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    7 VVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             HhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            567888899999999999999998763

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=88.99  E-value=1.9  Score=24.17  Aligned_cols=30  Identities=40%  Similarity=0.465  Sum_probs=21.3

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKL  131 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~  131 (150)
                      +..+...|..+=..|++++|+++|+++++.
T Consensus         5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~   34 (69)
T PF04212_consen    5 AIELIKKAVEADEAGNYEEALELYKEAIEY   34 (69)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            334455555556789999999998888763

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=88.82  E-value=8  Score=28.75  Aligned_cols=116  Identities=14%  Similarity=0.110  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC-----------CCC-
Q psy3020          13 YKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF-----------LSD-   79 (150)
Q Consensus        13 ~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~-----------~~~-   79 (150)
                      .+.-+..|++||+.+|++...+..+-.+ ....        .-....  ..+.+.+..+|+....           ... 
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~--------~~~~l~--~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f  116 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEKVW--------DSEKLA--KKWEELLFKNPGSPELWREYLDFRQSNFASF  116 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC--------CHHHHH--HHHHHHHHHCCCChHHHHHHHHHHHHHhccC
Confidence            4567899999999999999988877666 4444        223333  5666677777765531           000 


Q ss_pred             ------hHHHHHHHHHhcCcchh-hh-------H-HHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcch
Q psy3020          80 ------PSYVQMIKEIQKDPSLM-TL-------E-AKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHIL  138 (150)
Q Consensus        80 ------~~~~~~~~~l~~~~~~~-~~-------~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~  138 (150)
                            ..|.+.+..+....... ..       . .-...+..+...+.+.|-.+.|+..+.-.++++=..|..
T Consensus       117 ~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~~P~~  190 (321)
T PF08424_consen  117 TVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFFRPES  190 (321)
T ss_pred             cHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcCCccc
Confidence                  12334444443322221 00       0 114555556666678999999999999999988654443

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=88.66  E-value=1.3  Score=26.47  Aligned_cols=34  Identities=26%  Similarity=0.341  Sum_probs=29.5

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCC
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTN  135 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~  135 (150)
                      ..++.+++.+....|++++|+..+++|+.+-...
T Consensus        41 ~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~   74 (94)
T PF12862_consen   41 AYALLNLAELHRRFGHYEEALQALEEAIRLAREN   74 (94)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            5567889999999999999999999999876654

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=88.53  E-value=7.8  Score=30.49  Aligned_cols=94  Identities=16%  Similarity=0.093  Sum_probs=55.6

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHH----HHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMK----EAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL   77 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~----~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~   77 (150)
                      -|+.+...|+.++|++.|++++...+.-...+    ..++-+ ..+.        ++.+|.  ..+......+.-     
T Consensus       273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~--------~w~~A~--~~f~~L~~~s~W-----  337 (468)
T PF10300_consen  273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQH--------DWEEAA--EYFLRLLKESKW-----  337 (468)
T ss_pred             HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHc--------hHHHHH--HHHHHHHhcccc-----
Confidence            47888999999999999999996555544432    344444 4444        334443  222222221110     


Q ss_pred             CChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCH-------HHHHHHHHHHHhhcC
Q psy3020          78 SDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNF-------KEAIEAYSEAIKLDG  133 (150)
Q Consensus        78 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------~~A~~~~~~al~~~p  133 (150)
                                            .+.-..+..|.++...|+.       ++|.+.|.++-.+-.
T Consensus       338 ----------------------Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  338 ----------------------SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             ----------------------HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence                                  1144455667777788887       777777776655433

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein

Probab=88.45  E-value=1.1  Score=20.77  Aligned_cols=29  Identities=17%  Similarity=0.166  Sum_probs=24.0

Q ss_pred             HHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         121 AIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       121 A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      .++...+++..+|.|..+|..|-.+.-.+
T Consensus         2 El~~~~~~l~~~pknys~W~yR~~ll~~l   30 (31)
T PF01239_consen    2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL   30 (31)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence            45678899999999999999998776543

Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....

>PF13041 PPR_2: PPR repeat family

Probab=88.42  E-value=1.2  Score=22.97  Aligned_cols=30  Identities=20%  Similarity=0.244  Sum_probs=26.4

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKL  131 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~  131 (150)
                      ...|..+-..+.+.|++++|.+.|++..+.
T Consensus         3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~   32 (50)
T PF13041_consen    3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR   32 (50)
T ss_pred             hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence            456788888999999999999999999874

>KOG1550|consensus

Probab=88.19  E-value=6.2  Score=31.70  Aligned_cols=38  Identities=5%  Similarity=-0.051  Sum_probs=25.1

Q ss_pred             hhHHHHhh-----CCHHHHHHHHHHhhcc-----CCCcHHHHHHHHHH
Q psy3020           3 TYSCLSYL-----GRYKESISTYEEGLKL-----DPNNEQMKEAIKDV   40 (150)
Q Consensus         3 lg~~~~~~-----~~~~~A~~~~~~aL~~-----~p~~~~a~~~l~~~   40 (150)
                      +|.||..-     ++.+.|+.+|..+.+.     .-.++.+...+|.+
T Consensus       250 ~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~  297 (552)
T KOG1550|consen  250 LGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRL  297 (552)
T ss_pred             HHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHH
Confidence            45555544     7889999999999771     11144566667766

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=88.07  E-value=0.48  Score=28.40  Aligned_cols=27  Identities=22%  Similarity=0.425  Sum_probs=24.0

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDP   28 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p   28 (150)
                      ++|..+...|++++|+..+++|+++-.
T Consensus        46 ~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen   46 NLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            578899999999999999999997654

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=87.61  E-value=1.7  Score=19.85  Aligned_cols=28  Identities=18%  Similarity=0.239  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q psy3020         104 LLKDKGNAALQANNFKEAIEAYSEAIKL  131 (150)
Q Consensus       104 ~~~~~g~~~~~~~~~~~A~~~~~~al~~  131 (150)
                      .|..+-..+.+.|++++|.+.|.+..+.
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~   29 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLER   29 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            3566777889999999999999998653

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=87.52  E-value=1.1  Score=33.33  Aligned_cols=84  Identities=7%  Similarity=0.050  Sum_probs=54.6

Q ss_pred             HHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhh
Q psy3020          19 TYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMT   97 (150)
Q Consensus        19 ~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   97 (150)
                      .|.++..--|+++..|.+.+.. ...+.        +.+.-  .-+..++..+|.+.+                      
T Consensus        95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~--------y~~~~--nI~~~~l~khP~nvd----------------------  142 (435)
T COG5191          95 ELYRSTNKFFNDPKIWSQYAAYVIKKKM--------YGEMK--NIFAECLTKHPLNVD----------------------  142 (435)
T ss_pred             eeehhhhcCCCCcHHHHHHHHHHHHHHH--------HHHHH--HHHHHHHhcCCCCce----------------------
Confidence            3445555667778877777666 55552        22222  344556666776543                      


Q ss_pred             hHHHhHHHHHHH-HHHHHhcCHHHHHHHHHHHHhhcCCCcchhh
Q psy3020          98 LEAKISLLKDKG-NAALQANNFKEAIEAYSEAIKLDGTNHILFS  140 (150)
Q Consensus        98 ~~~~~~~~~~~g-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  140 (150)
                            .|..-. --+...++++.+-..|.+++..||++|..|.
T Consensus       143 ------lWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~  180 (435)
T COG5191         143 ------LWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI  180 (435)
T ss_pred             ------eeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence                  333311 1234678999999999999999999998875

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=87.46  E-value=1.8  Score=31.30  Aligned_cols=44  Identities=14%  Similarity=0.229  Sum_probs=38.1

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         106 KDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       106 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      .++=..+...++++.|..+-.+.+.++|+++.-+.-||.+|.++
T Consensus       185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql  228 (269)
T COG2912         185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQL  228 (269)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhc
Confidence            33444567889999999999999999999999999999999876

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=87.32  E-value=2.7  Score=24.55  Aligned_cols=42  Identities=14%  Similarity=0.138  Sum_probs=30.4

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHH
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRS  143 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a  143 (150)
                      .......|--++..++..+|+..++++++..++.+.-+.-+|
T Consensus         6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG   47 (80)
T PF10579_consen    6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLG   47 (80)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHH
Confidence            344556677778888888888888888888888766554444

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.07  E-value=2.4  Score=24.50  Aligned_cols=31  Identities=23%  Similarity=0.169  Sum_probs=22.2

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLD  132 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~  132 (150)
                      +..+...+.-+=+.|+|++|+.+|.++++..
T Consensus         6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l   36 (76)
T cd02681           6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQLL   36 (76)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            3444455555557899999999999988743

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG4814|consensus

Probab=86.93  E-value=4.9  Score=32.92  Aligned_cols=39  Identities=18%  Similarity=0.248  Sum_probs=21.7

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhh
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFS  140 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  140 (150)
                      +...+.+..+|....+.+.|++++.+|-+.+|.++...+
T Consensus       394 aK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~  432 (872)
T KOG4814|consen  394 AKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQL  432 (872)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHH
Confidence            334445555555556666666666666666665554433

>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane

Probab=86.59  E-value=1.4  Score=27.98  Aligned_cols=36  Identities=19%  Similarity=0.273  Sum_probs=30.5

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHH
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAI   37 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l   37 (150)
                      .+|..+...|++++|..+|-+||.+-|+-.+....+
T Consensus        68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL~i~  103 (121)
T PF02064_consen   68 QLGEQLLAQGDYEEAAEHFYNALKVCPQPAELLQIY  103 (121)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            578899999999999999999999999977765544

Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=85.81  E-value=3  Score=24.14  Aligned_cols=29  Identities=24%  Similarity=0.328  Sum_probs=18.2

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIK  130 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~  130 (150)
                      +..+...+.-+=+.|+|++|+.+|.++|+
T Consensus         6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie   34 (77)
T cd02683           6 AKEVLKRAVELDQEGRFQEALVCYQEGID   34 (77)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            33444455555567788777777777665

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>KOG1070|consensus

Probab=85.64  E-value=14  Score=33.21  Aligned_cols=31  Identities=16%  Similarity=0.150  Sum_probs=23.6

Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHH-Hhhh
Q psy3020          14 KESISTYEEGLKLDPNNEQMKEAIKDV-RNQE   44 (150)
Q Consensus        14 ~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g   44 (150)
                      .+..++|++.+..+|+.+-.|...-.. ..++
T Consensus      1441 pesaeDferlvrssPNSSi~WI~YMaf~Lels 1472 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELS 1472 (1710)
T ss_pred             CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhh
Confidence            346789999999999999888665544 4555

>KOG1941|consensus

Probab=85.63  E-value=3.5  Score=31.51  Aligned_cols=33  Identities=15%  Similarity=0.182  Sum_probs=27.9

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT  134 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  134 (150)
                      ...+..+|..+.+..++++|.-+-.+|.++-..
T Consensus       162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s  194 (518)
T KOG1941|consen  162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNS  194 (518)
T ss_pred             eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHh
Confidence            466778999999999999999999999886543

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=85.48  E-value=1.7  Score=33.59  Aligned_cols=46  Identities=13%  Similarity=0.179  Sum_probs=42.0

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hhhhhcc
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMND   47 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~   47 (150)
                      .|..||..+++.+-|+.+--+.+-++|.++.-|+.-+.| +.+.++.
T Consensus       233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~  279 (569)
T PF15015_consen  233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYS  279 (569)
T ss_pred             HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999988 8888664

>KOG1070|consensus

Probab=85.48  E-value=12  Score=33.49  Aligned_cols=124  Identities=11%  Similarity=0.077  Sum_probs=80.9

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCC--CCCCCCC
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPR--TKPFLSD   79 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~--~~~~~~~   79 (150)
                      |...|...+++++|.+.|+.-++-=.+-...|.+.++. ...+        +.++|-  .-+.+++...|.  |..    
T Consensus      1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~n--------e~~aa~--~lL~rAL~~lPk~eHv~---- 1601 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQN--------EAEAAR--ELLKRALKSLPKQEHVE---- 1601 (1710)
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhccc--------HHHHHH--HHHHHHHhhcchhhhHH----
Confidence            45667777888888888888887777677788888776 4444        223333  445556666665  222    


Q ss_pred             hHHHHHHHH------------------HhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHh--hcCCCcchh
Q psy3020          80 PSYVQMIKE------------------IQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIK--LDGTNHILF  139 (150)
Q Consensus        80 ~~~~~~~~~------------------l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~  139 (150)
                        +......                  +...|      .+-+.|.-....-.+.|+-.-+-..|++++.  +-|.....+
T Consensus      1602 --~IskfAqLEFk~GDaeRGRtlfEgll~ayP------KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKff 1673 (1710)
T KOG1070|consen 1602 --FISKFAQLEFKYGDAERGRTLFEGLLSAYP------KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFF 1673 (1710)
T ss_pred             --HHHHHHHHHhhcCCchhhHHHHHHHHhhCc------cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHH
Confidence              2222111                  22222      3367777777777888898999999999876  456677777


Q ss_pred             hcHHHHHHh
Q psy3020         140 SNRSAAFAK  148 (150)
Q Consensus       140 ~n~a~~~~~  148 (150)
                      |.+..-|-+
T Consensus      1674 fKkwLeyEk 1682 (1710)
T KOG1070|consen 1674 FKKWLEYEK 1682 (1710)
T ss_pred             HHHHHHHHH
Confidence            777776654

>KOG4507|consensus

Probab=84.53  E-value=4.2  Score=33.01  Aligned_cols=104  Identities=12%  Similarity=0.093  Sum_probs=63.3

Q ss_pred             HHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHH----------
Q psy3020          18 STYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMI----------   86 (150)
Q Consensus        18 ~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----------   86 (150)
                      .....+++-.|.+...|++-+.+ +..|        ...+|+  +=+..++...|.+..-.-.-.....+          
T Consensus       200 ~~~~~glq~~~~sw~lH~~as~YWR~~G--------~~~~A~--~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~  269 (886)
T KOG4507|consen  200 HLIHEGLQKNTSSWVLHNMASFYWRIKG--------EPYQAV--ECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAA  269 (886)
T ss_pred             HHHHHhhhcCchhHHHHHHHHHHHHHcC--------Chhhhh--HHHHHHhhhCCcccccchhhhHHHHHHHcccccchh
Confidence            45567888888888888887777 8888        555566  55555666666543310000000000          


Q ss_pred             ----HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcc
Q psy3020          87 ----KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHI  137 (150)
Q Consensus        87 ----~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~  137 (150)
                          ..++..+..      ...++-+|+++.++++|.-.+.+|..+.+.+|.-..
T Consensus       270 iILhAA~~dA~~~------t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q  318 (886)
T KOG4507|consen  270 VILHAALDDADFF------TSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQ  318 (886)
T ss_pred             heeehhccCCccc------cccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhH
Confidence                001111111      334667888888899999999999999888886543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=84.29  E-value=1.9  Score=29.14  Aligned_cols=32  Identities=25%  Similarity=0.278  Sum_probs=28.6

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDG  133 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p  133 (150)
                      ..++..+|..+.+.|++++|+++|.++.+...
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~   67 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCT   67 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcC
Confidence            67889999999999999999999999877543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1585|consensus

Probab=84.26  E-value=6.8  Score=28.33  Aligned_cols=29  Identities=10%  Similarity=0.061  Sum_probs=21.5

Q ss_pred             hHHHHhhCCHHHHHHHHHHhhccCCCcHH
Q psy3020           4 YSCLSYLGRYKESISTYEEGLKLDPNNEQ   32 (150)
Q Consensus         4 g~~~~~~~~~~~A~~~~~~aL~~~p~~~~   32 (150)
                      +.+|...++|++|..++.+|.+-.-+|..
T Consensus        38 AvafRnAk~feKakdcLlkA~~~yEnnrs   66 (308)
T KOG1585|consen   38 AVAFRNAKKFEKAKDCLLKASKGYENNRS   66 (308)
T ss_pred             HHHHHhhccHHHHHHHHHHHHHHHHhccc
Confidence            56788888888888888888865554443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=84.10  E-value=3.8  Score=27.33  Aligned_cols=43  Identities=9%  Similarity=-0.070  Sum_probs=37.6

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hhhhh
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEM   45 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~   45 (150)
                      -|..+...|+|.+|+..++.+..-.|..+.+.-.++.| ..+++
T Consensus        50 ~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D   93 (160)
T PF09613_consen   50 DGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD   93 (160)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence            46788999999999999999999999999888888888 88774

>KOG3616|consensus

Probab=83.41  E-value=3.6  Score=34.42  Aligned_cols=20  Identities=0%  Similarity=0.247  Sum_probs=16.5

Q ss_pred             hhHHHHhhCCHHHHHHHHHH
Q psy3020           3 TYSCLSYLGRYKESISTYEE   22 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~   22 (150)
                      -|..+.+..++++|+++|++
T Consensus       667 agdlfeki~d~dkale~fkk  686 (1636)
T KOG3616|consen  667 AGDLFEKIHDFDKALECFKK  686 (1636)
T ss_pred             hhhHHHHhhCHHHHHHHHHc
Confidence            36778888899999998876

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=83.41  E-value=1.1  Score=34.82  Aligned_cols=29  Identities=31%  Similarity=0.354  Sum_probs=26.1

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIK  130 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~  130 (150)
                      +..|..+|.....+|+++-|.++|.++=.
T Consensus       347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d  375 (443)
T PF04053_consen  347 PEKWKQLGDEALRQGNIELAEECYQKAKD  375 (443)
T ss_dssp             HHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence            77999999999999999999999998643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0985|consensus

Probab=83.05  E-value=19  Score=31.58  Aligned_cols=41  Identities=15%  Similarity=0.127  Sum_probs=31.0

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hhhhhcc
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMND   47 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~   47 (150)
                      .+|.+....|..++|++.|-+|     +++..+....++ ...|.++
T Consensus      1109 qlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1109 QLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYE 1150 (1666)
T ss_pred             HHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHH
Confidence            4788889999999999999775     566667777766 6666443

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=82.84  E-value=1.9  Score=24.11  Aligned_cols=23  Identities=22%  Similarity=0.417  Sum_probs=17.2

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhc
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLK   25 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~   25 (150)
                      .|.-.-+.|++++|++.|.++++
T Consensus        11 ~Av~~D~~g~~~~A~~~Y~~ai~   33 (69)
T PF04212_consen   11 KAVEADEAGNYEEALELYKEAIE   33 (69)
T ss_dssp             HHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH
Confidence            35566778888888888887763

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane

Probab=82.70  E-value=4.8  Score=25.53  Aligned_cols=33  Identities=21%  Similarity=0.293  Sum_probs=28.8

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT  134 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  134 (150)
                      +..-..+|..+...|++++|+.+|-+||.+-|+
T Consensus        63 Fl~qV~lGE~L~~~G~~~~aa~hf~nAl~V~~q   95 (121)
T PF02064_consen   63 FLQQVQLGEQLLAQGDYEEAAEHFYNALKVCPQ   95 (121)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence            556677999999999999999999999999995

Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=82.63  E-value=4.2  Score=23.47  Aligned_cols=30  Identities=33%  Similarity=0.427  Sum_probs=21.8

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKL  131 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~  131 (150)
                      +..+...|...=..|+|++|++.|..+|+.
T Consensus         6 ai~Lv~~A~~eD~~gny~eA~~lY~~ale~   35 (75)
T cd02680           6 AHFLVTQAFDEDEKGNAEEAIELYTEAVEL   35 (75)
T ss_pred             HHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence            334444454455789999999999999875

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG0546|consensus

Probab=82.44  E-value=2.7  Score=31.62  Aligned_cols=37  Identities=19%  Similarity=0.236  Sum_probs=34.2

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcch
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHIL  138 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~  138 (150)
                      ..+++.+|..+....++++|++.+..+....|++...
T Consensus       309 tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i  345 (372)
T KOG0546|consen  309 TKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAI  345 (372)
T ss_pred             CcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHH
Confidence            7889999999999999999999999999999988654

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=81.95  E-value=5  Score=26.51  Aligned_cols=43  Identities=16%  Similarity=-0.011  Sum_probs=37.5

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hhhhh
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEM   45 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~   45 (150)
                      -|..+...|+|.+|+..+.....-.|..+.+.-.++.| +.+|+
T Consensus        50 dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D   93 (153)
T TIGR02561        50 DGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD   93 (153)
T ss_pred             HHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence            47789999999999999999988888888888888888 88884

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.91  E-value=1.8  Score=25.04  Aligned_cols=21  Identities=33%  Similarity=0.638  Sum_probs=14.3

Q ss_pred             hHHHHhhCCHHHHHHHHHHhh
Q psy3020           4 YSCLSYLGRYKESISTYEEGL   24 (150)
Q Consensus         4 g~~~~~~~~~~~A~~~~~~aL   24 (150)
                      |.-.-+.|+|++|+.+|.++|
T Consensus        13 Ave~D~~g~y~eAl~~Y~~ai   33 (77)
T cd02683          13 AVELDQEGRFQEALVCYQEGI   33 (77)
T ss_pred             HHHHHHhccHHHHHHHHHHHH
Confidence            445566788887777777665

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>KOG2300|consensus

Probab=81.43  E-value=26  Score=28.04  Aligned_cols=104  Identities=12%  Similarity=0.061  Sum_probs=60.1

Q ss_pred             hhhHHHHhhC--CHHHHHHHHHHhhccCCCcH-HH--HHHHHHH--HhhhhccCCCCCchhhhhCChHHHHhhccCCCCC
Q psy3020           2 TTYSCLSYLG--RYKESISTYEEGLKLDPNNE-QM--KEAIKDV--RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTK   74 (150)
Q Consensus         2 ~lg~~~~~~~--~~~~A~~~~~~aL~~~p~~~-~a--~~~l~~~--~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~   74 (150)
                      ++|..+...|  +...+++|.+..+...|.+- ++  +..+|.+  ......        +.|-  ..+.++..+....+
T Consensus        12 GlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~--------elAk--sHLekA~~i~~~ip   81 (629)
T KOG2300|consen   12 GLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNV--------ELAK--SHLEKAWLISKSIP   81 (629)
T ss_pred             HHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccH--------HHHH--HHHHHHHHHHcccc
Confidence            5677788888  88999999999999999754 44  4566766  333322        2222  23333322221111


Q ss_pred             CCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCc
Q psy3020          75 PFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQAN-NFKEAIEAYSEAIKLDGTNH  136 (150)
Q Consensus        75 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~  136 (150)
                      .+.                     +.|.++...++..+.... .+..|.....+|+++..+.|
T Consensus        82 ~fy---------------------dvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p  123 (629)
T KOG2300|consen   82 SFY---------------------DVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP  123 (629)
T ss_pred             cHH---------------------hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc
Confidence            111                     022555555666665444 66667777777777766665

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=81.34  E-value=3.8  Score=27.04  Aligned_cols=47  Identities=15%  Similarity=0.052  Sum_probs=37.9

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                      +..-..-|.++...|+|.+|+..+++..+-.|..+..--.++.|+.-
T Consensus        44 ~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a   90 (153)
T TIGR02561        44 KELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA   90 (153)
T ss_pred             cccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence            44455668888999999999999999999988878776667777654

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=81.19  E-value=9.7  Score=27.88  Aligned_cols=48  Identities=19%  Similarity=0.207  Sum_probs=42.0

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      ..++..+...+...|+++.+++.+++.+.++|-+...|..+=.+|.+.
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~  200 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVN  200 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHc
Confidence            677788888888999999999999999999999999988877777653

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=81.09  E-value=13  Score=27.46  Aligned_cols=21  Identities=14%  Similarity=0.184  Sum_probs=15.8

Q ss_pred             hhhHHHHhhCCHHHHHHHHHH
Q psy3020           2 TTYSCLSYLGRYKESISTYEE   22 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~   22 (150)
                      .++.||...|+.+.|...+..
T Consensus       173 ~la~~~l~~g~~e~A~~iL~~  193 (304)
T COG3118         173 LLAECLLAAGDVEAAQAILAA  193 (304)
T ss_pred             HHHHHHHHcCChHHHHHHHHh
Confidence            578899999998876665544

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=80.92  E-value=6.3  Score=22.43  Aligned_cols=28  Identities=36%  Similarity=0.469  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q psy3020         103 SLLKDKGNAALQANNFKEAIEAYSEAIK  130 (150)
Q Consensus       103 ~~~~~~g~~~~~~~~~~~A~~~~~~al~  130 (150)
                      ..+...|...=+.|++++|+.+|.++++
T Consensus         9 ~~li~~Av~~d~~g~~~eAl~~Y~~a~e   36 (77)
T smart00745        9 KELISKALKADEAGDYEEALELYKKAIE   36 (77)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3344455555567888887777777765

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.66  E-value=1.9  Score=24.91  Aligned_cols=22  Identities=27%  Similarity=0.363  Sum_probs=16.9

Q ss_pred             hHHHHhhCCHHHHHHHHHHhhc
Q psy3020           4 YSCLSYLGRYKESISTYEEGLK   25 (150)
Q Consensus         4 g~~~~~~~~~~~A~~~~~~aL~   25 (150)
                      |.-.-+.|+|++|+..|..+++
T Consensus        13 Ave~D~~g~y~eA~~~Y~~aie   34 (76)
T cd02681          13 AVQRDQEGRYSEAVFYYKEAAQ   34 (76)
T ss_pred             HHHHHHccCHHHHHHHHHHHHH
Confidence            4455677899998888888874

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=80.51  E-value=6.6  Score=22.40  Aligned_cols=29  Identities=28%  Similarity=0.354  Sum_probs=19.6

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIK  130 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~  130 (150)
                      +..+...|.-.=..|+|++|+..|.++++
T Consensus         6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie   34 (75)
T cd02678           6 AIELVKKAIEEDNAGNYEEALRLYQHALE   34 (75)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34445555555577888888888887766

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=80.07  E-value=4.5  Score=18.46  Aligned_cols=28  Identities=14%  Similarity=0.116  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q psy3020         104 LLKDKGNAALQANNFKEAIEAYSEAIKL  131 (150)
Q Consensus       104 ~~~~~g~~~~~~~~~~~A~~~~~~al~~  131 (150)
                      .|..+-..+.+.|+++.|.+.|....+.
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~   30 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQ   30 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            5677788889999999999999988763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	150
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		1e-10
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		1e-04
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		3e-04
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		8e-04

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/48 (58%), Positives = 38/48 (79%)
Query: 101 KISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
           +++ LK+KGN AL   N  +A++ YSEAIKLD  NH+L+SNRSAA+AK
Sbjct: 3   QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK 50

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 100 AKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
           A+   LK +GN  ++  NF+ A+  Y +AI+L+  N + F NR+AA++K
Sbjct: 10  AEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK 58

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 32/47 (68%)
Query: 104 LLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKAI 150
           ++K+KGN   Q  ++ +A++ Y+EAIK +  +  L+SNR+A + K +
Sbjct: 18  MVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL 64

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 27/43 (62%)
Query: 106 KDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
           K+KGN   +  ++  A+  Y+EA+K D  N IL+SNR+A   K
Sbjct: 17  KNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	150
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	2e-17
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	1e-07
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	5e-16
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	6e-05
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	5e-16
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-06
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	4e-15
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	4e-15
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-05
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	4e-15
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	3e-06
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	4e-15
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	2e-06
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	8e-15
2l6j_A	111	TPR repeat-containing protein associated with HSP;	1e-14
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-13
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	2e-13
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	5e-13
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	4e-05
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	2e-12
2llv_A	71	Heat shock protein STI1; DP domain, alpha helix, c	2e-12
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	7e-12
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	5e-09
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-08
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-07
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-04
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-08
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	6e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-07
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-04
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	3e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	5e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	7e-05
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	9e-05
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	1e-04
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	8e-04

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 72.2 bits (178), Expect = 2e-17
 Identities = 28/44 (63%), Positives = 35/44 (79%)

Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
           LK+KGN AL   N  +A++ YSEAIKLD  NH+L+SNRSAA+AK
Sbjct: 7   LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK 50

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 46.4 bits (111), Expect = 1e-07
 Identities = 16/39 (41%), Positives = 28/39 (71%)

Query: 5   SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 43
           + L +L R++E+  TYEEGLK + NN Q+KE ++++  +
Sbjct: 80  AALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 118

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 69.8 bits (171), Expect = 5e-16
 Identities = 19/56 (33%), Positives = 32/56 (57%)

Query: 93  PSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
           P  M    +   LK +GNAA+    + +AI+ Y++A+ +   N I  SNR+AA++ 
Sbjct: 2   PRSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA 57

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 40.1 bits (94), Expect = 6e-05
 Identities = 11/50 (22%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 5   SCLSYLGRYKESISTYEEGLKLDPNN--EQMKEAIKDVRNQEMNDMNRGD 52
                +  YK +   YE+G++ + N   + MK  ++  + +++ + NRG 
Sbjct: 87  LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK-RKIEEANRGA 135

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 68.4 bits (168), Expect = 5e-16
 Identities = 18/44 (40%), Positives = 27/44 (61%)

Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
            K+KGN   +  ++  A+  Y+EA+K D  N IL+SNR+A   K
Sbjct: 16  EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK 59

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 10/36 (27%), Positives = 23/36 (63%)

Query: 6   CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVR 41
           CL  +  + ++   YE+ L++DP+NE+ +E +++  
Sbjct: 90  CLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 66.6 bits (163), Expect = 4e-15
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
           LK++GN       + EA   Y  AI  +    + ++NR+  + K
Sbjct: 12  LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK 55

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 67.4 bits (165), Expect = 4e-15
 Identities = 17/44 (38%), Positives = 30/44 (68%)

Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
           LK + N   +A +++ AI+ YS+AI+L+ +N I + NRS A+ +
Sbjct: 16  LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR 59

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 10/67 (14%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 5   SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIF 64
           +    LG+++ ++  YE  +K+ P+++  K   ++  N+ +         A      ++ 
Sbjct: 89  ASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC-NKIVKQKAFERAIAGDEHKRSVV 147

Query: 65  VQLQLDP 71
             L ++ 
Sbjct: 148 DSLDIES 154

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 66.5 bits (163), Expect = 4e-15
 Identities = 18/44 (40%), Positives = 30/44 (68%)

Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
           LK +GN  ++  NF+ A+  Y +AI+L+  N + F NR+AA++K
Sbjct: 15  LKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK 58

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 43.0 bits (102), Expect = 3e-06
 Identities = 13/38 (34%), Positives = 24/38 (63%)

Query: 6   CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQ 43
            LS L ++ E+++ Y++ L+LDP+NE  K  +K    +
Sbjct: 89  ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 66.5 bits (163), Expect = 4e-15
 Identities = 17/44 (38%), Positives = 30/44 (68%)

Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
           +K+KGN   Q  ++ +A++ Y+EAIK +  +  L+SNR+A + K
Sbjct: 19  VKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK 62

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 43.4 bits (103), Expect = 2e-06
 Identities = 7/41 (17%), Positives = 19/41 (46%)

Query: 6   CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMN 46
            L  +  Y +++  Y++ L LD + ++  +  +     + N
Sbjct: 93  ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 65.4 bits (160), Expect = 8e-15
 Identities = 14/44 (31%), Positives = 25/44 (56%)

Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
            + +G      +++  A++AY+E IK    +   +SNR+AA AK
Sbjct: 7   ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK 50

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 64.6 bits (158), Expect = 1e-14
 Identities = 12/44 (27%), Positives = 24/44 (54%)

Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
            K++GN+  +   ++EA+  Y + I     N + +SN++ A  K
Sbjct: 7   QKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK 50

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 64.6 bits (157), Expect = 2e-13
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
           LK++GN       + EA   Y  AI  +    + ++NR+  + K
Sbjct: 7   LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK 50

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 61.9 bits (151), Expect = 2e-13
 Identities = 14/44 (31%), Positives = 26/44 (59%)

Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
            K+ GN A +  +F  A++ Y +A +LD TN    +N++A + +
Sbjct: 7   EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE 50

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 61.2 bits (149), Expect = 5e-13
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGT---NHILFSNRSAAFAK 148
           L+ +GN   +  ++  A+ AY++A+ LD T     +L  NR+A   K
Sbjct: 31  LRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK 77

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 40.0 bits (94), Expect = 4e-05
 Identities = 9/36 (25%), Positives = 21/36 (58%)

Query: 6   CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVR 41
            L  LGR  +++   +  + L+P N+  +EA++++ 
Sbjct: 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 59.2 bits (144), Expect = 2e-12
 Identities = 16/44 (36%), Positives = 29/44 (65%)

Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
            KD GNAA +  +F++A   Y +AI+LD +N   ++N++A + +
Sbjct: 11  EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE 54

>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 57.9 bits (140), Expect = 2e-12
 Identities = 12/47 (25%), Positives = 24/47 (51%)

Query: 53 PFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLE 99
              LF+DPN+   L+ +P+T   + DP  V  +   +++P  +  +
Sbjct: 5  GLTQLFADPNLIENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIGQD 51

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 60.9 bits (148), Expect = 7e-12
 Identities = 17/44 (38%), Positives = 30/44 (68%)

Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
           LK + N   +A +++ AI+ YS+AI+L+ +N I + NRS A+ +
Sbjct: 9   LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR 52

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 52.2 bits (126), Expect = 5e-09
 Identities = 25/163 (15%), Positives = 51/163 (31%), Gaps = 44/163 (26%)

Query: 6   CLSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKDVR------NQEM 45
                G Y+ +IST  + ++                         + D++       + +
Sbjct: 47  AEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL 106

Query: 46  NDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLL 105
            +    D    L +      + +                   E   +P       K    
Sbjct: 107 TEHRTADILTKLRNAEKELKKAE------------------AEAYVNPE------KAEEA 142

Query: 106 KDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
           + +G      +++  A++AY+E IK    +   +SNR+AA AK
Sbjct: 143 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK 185

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
            K +GN   +A  F EAIE Y++A +L   +    +NR+AA  +
Sbjct: 8   EKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYE 50

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 23/147 (15%), Positives = 49/147 (33%), Gaps = 29/147 (19%)

Query: 6   CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFV 65
               LG ++ S+S   E LKLD ++++     K V+               L       +
Sbjct: 220 LYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK-----------LNKLIESAEELI 268

Query: 66  QLQLDPRTKPFLSDPSYVQMIKE----IQKDPSLMTLEAKISLLKDKGNAALQANNFKEA 121
           +               Y     +    ++ +PS+     +    +   +   +     EA
Sbjct: 269 RDG------------RYTDATSKYESVMKTEPSIAEYTVR--SKERICHCFSKDEKPVEA 314

Query: 122 IEAYSEAIKLDGTNHILFSNRSAAFAK 148
           I   SE ++++  N     +R+ A+  
Sbjct: 315 IRVCSEVLQMEPDNVNALKDRAEAYLI 341

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 49.7 bits (119), Expect = 5e-08
 Identities = 20/161 (12%), Positives = 42/161 (26%), Gaps = 57/161 (35%)

Query: 6   CLSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKDVRNQEMNDMNRG 51
           C    G  +++IS  +   KL  +N                 + ++ +VR          
Sbjct: 186 CFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC-------- 237

Query: 52  DPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNA 111
                          L+LD   K   +                      K++ L +    
Sbjct: 238 ---------------LKLDQDHKRCFA----------------HYKQVKKLNKLIESAEE 266

Query: 112 ALQANNFKEAIEAYSEAIKLDGTNH----ILFSNRSAAFAK 148
            ++   + +A   Y   +K + +               F+K
Sbjct: 267 LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSK 307

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 10/44 (22%), Positives = 18/44 (40%)

Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
             + G   L A    +A+  +  A+  D  N+I +  R+  F  
Sbjct: 29  HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLA 72

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 46.2 bits (110), Expect = 9e-07
 Identities = 22/144 (15%), Positives = 42/144 (29%), Gaps = 26/144 (18%)

Query: 5   SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQE--MNDMNRGDPFANLFSDPN 62
             L   G+  E+   +++ LK +P+  + KEA   +   +      ++            
Sbjct: 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGS----- 156

Query: 63  IFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAI 122
                              Y   I  + K   L        L + +    ++    ++AI
Sbjct: 157 -----------------GDYTAAIAFLDK--ILEVCVWDAELRELRAECFIKEGEPRKAI 197

Query: 123 EAYSEAIKLDGTNHILFSNRSAAF 146
                A KL   N   F   S  +
Sbjct: 198 SDLKAASKLKNDNTEAFYKISTLY 221

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 19/157 (12%), Positives = 46/157 (29%), Gaps = 50/157 (31%)

Query: 6   CLSYLGRYKESISTYEEGLKLDPNNE--------------QMKEAIKDVRNQEMNDMNRG 51
               +G+ K ++    + ++L  +                ++ EA  D +          
Sbjct: 69  VFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKV-------- 120

Query: 52  DPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNA 111
                          L+ +P         S +    E+Q+             L+ +   
Sbjct: 121 ---------------LKSNPSENEEKEAQSQLIKSDEMQR-------------LRSQALN 152

Query: 112 ALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
           A  + ++  AI    + +++   +  L   R+  F K
Sbjct: 153 AFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIK 189

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 33/139 (23%)

Query: 10  LGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQL 69
            GRY ++ S YE  +K +P+  +     K+                      + F + + 
Sbjct: 270 DGRYTDATSKYESVMKTEPSIAEYTVRSKE---------RIC----------HCFSKDEK 310

Query: 70  DPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAI 129
                   S        + +Q +P    + A    LKD+  A L    + EAI+ Y  A 
Sbjct: 311 PVEAIRVCS--------EVLQMEPDN--VNA----LKDRAEAYLIEEMYDEAIQDYETAQ 356

Query: 130 KLDGTNHILFSNRSAAFAK 148
           + +  +  +      A   
Sbjct: 357 EHNENDQQIREGLEKAQRL 375

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 51.7 bits (124), Expect = 1e-08
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
           LKDKGN   +   + +AI+ Y+ A++L   + + +SN SA +  
Sbjct: 9   LKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVS 51

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 40.5 bits (95), Expect = 8e-05
 Identities = 23/169 (13%), Positives = 52/169 (30%), Gaps = 24/169 (14%)

Query: 6   CLSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKDVRNQEMND---- 47
           C   +G  K+ +    + L+L P+                +  +A+ D+    +N     
Sbjct: 48  CYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFND 107

Query: 48  ------MNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAK 101
                 + R      +      F  +     T   LS     +   + +  PS+ ++ + 
Sbjct: 108 ASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASF 167

Query: 102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKAI 150
             + K +   A    + +   E  +    L   +   +     +F KA 
Sbjct: 168 FGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAA 216

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 23/159 (14%), Positives = 51/159 (32%), Gaps = 31/159 (19%)

Query: 5   SCLSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKDVRNQEMNDMNR 50
             ++      E  + +++ LKLD NN              +   +A KD    +  +++ 
Sbjct: 278 LIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKD--FDKAKELDP 335

Query: 51  GDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGN 110
            + F        +  +       +   S        +  +K P          +      
Sbjct: 336 ENIFP-YIQLACLAYRENKFDDCETLFS--------EAKRKFPE------APEVPNFFAE 380

Query: 111 AALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA 149
                N+F +A++ Y  AI+L+     ++   +    KA
Sbjct: 381 ILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKA 419

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 17/165 (10%), Positives = 40/165 (24%), Gaps = 23/165 (13%)

Query: 6   CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFV 65
               + + KE     +                +  + + +  +     F  +F     F 
Sbjct: 119 NKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFA 178

Query: 66  QLQLDPRTKPFLSD-----------------PSYVQMIKEIQKDPSLMTLEAKIS----- 103
                      L +                  S+ +  +  ++       + K+      
Sbjct: 179 NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238

Query: 104 LLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
            L+  G      N+   A E   +AI+L    +      +   A 
Sbjct: 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYI-YMALIMAD 282

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 50.7 bits (122), Expect = 2e-08
 Identities = 21/151 (13%), Positives = 47/151 (31%), Gaps = 37/151 (24%)

Query: 6   CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFV 65
               LG ++ S+S   E LKLD ++++     K V+      +   +             
Sbjct: 197 LYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLN-KLIESAEELIRD-------- 247

Query: 66  QLQLDPRTKPFLSDPSYVQMIKE--------IQKDPSLMTLEAKISLLKDKGNAALQANN 117
                                 +        ++ +PS+     +    +   +   +   
Sbjct: 248 ------------------GRYTDATSKYESVMKTEPSVAEYTVR--SKERICHCFSKDEK 287

Query: 118 FKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
             EAI   SE ++++  N     +R+ A+  
Sbjct: 288 PVEAIRICSEVLQMEPDNVNALKDRAEAYLI 318

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 50.3 bits (121), Expect = 2e-08
 Identities = 20/161 (12%), Positives = 41/161 (25%), Gaps = 57/161 (35%)

Query: 6   CLSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKDVRNQEMNDMNRG 51
           C    G  +++IS  +   KL  +N                 + ++ +VR          
Sbjct: 163 CFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRE--------- 213

Query: 52  DPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNA 111
                          L+LD   K   +                      K++ L +    
Sbjct: 214 ---C-----------LKLDQDHKRCFA----------------HYKQVKKLNKLIESAEE 243

Query: 112 ALQANNFKEAIEAYSEAIKLD----GTNHILFSNRSAAFAK 148
            ++   + +A   Y   +K +                 F+K
Sbjct: 244 LIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSK 284

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 46.5 bits (111), Expect = 6e-07
 Identities = 10/44 (22%), Positives = 18/44 (40%)

Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
             + G   L A    +A+  +  A+  D  N+I +  R+  F  
Sbjct: 6   HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLA 49

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 45.7 bits (109), Expect = 9e-07
 Identities = 23/144 (15%), Positives = 43/144 (29%), Gaps = 22/144 (15%)

Query: 5   SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIF 64
             L   G+  E+   +++ LK +P+ ++ KEA   +   +     R              
Sbjct: 79  HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALD--------- 129

Query: 65  VQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEA 124
                            Y   I  + K   L        L + +    ++    ++AI  
Sbjct: 130 -----------AFDGADYTAAITFLDK--ILEVCVWDAELRELRAECFIKEGEPRKAISD 176

Query: 125 YSEAIKLDGTNHILFSNRSAAFAK 148
              A KL   N   F   S  + +
Sbjct: 177 LKAASKLKSDNTEAFYKISTLYYQ 200

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 20/158 (12%), Positives = 46/158 (29%), Gaps = 52/158 (32%)

Query: 6   CLSYLGRYKESISTYEEGLKLDPNNE--------------QMKEAIKDVRNQEMNDMNRG 51
               +G+ K ++    + + L  +                ++ EA  D            
Sbjct: 46  VFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDD------------ 93

Query: 52  DPFANLFSDPNIFVQ-LQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGN 110
                       F + L+ +P  +      S +    E+Q+             L+ +  
Sbjct: 94  ------------FKKVLKSNPSEQEEKEAESQLVKADEMQR-------------LRSQAL 128

Query: 111 AALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
            A    ++  AI    + +++   +  L   R+  F K
Sbjct: 129 DAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIK 166

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 26/139 (18%), Positives = 46/139 (33%), Gaps = 33/139 (23%)

Query: 7   LSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQ 66
           L   GRY ++ S YE  +K +P+  +     K                       + F +
Sbjct: 244 LIRDGRYTDATSKYESVMKTEPSVAEYTVRSK---------ERIC----------HCFSK 284

Query: 67  LQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYS 126
            +         S        + +Q +P    + A    LKD+  A L    + EAI+ Y 
Sbjct: 285 DEKPVEAIRICS--------EVLQMEPDN--VNA----LKDRAEAYLIEEMYDEAIQDYE 330

Query: 127 EAIKLDGTNHILFSNRSAA 145
            A + +  +  +      A
Sbjct: 331 AAQEHNENDQQIREGLEKA 349

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 50.2 bits (120), Expect = 3e-08
 Identities = 19/144 (13%), Positives = 51/144 (35%), Gaps = 6/144 (4%)

Query: 6   CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV---RNQEMNDMNRGDPFANLFSDPN 62
             + L  +  +   Y+E L +D    +  + +         E  D+     ++    +  
Sbjct: 209 VYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDA 268

Query: 63  IFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAI 122
            F++     +     S    ++  ++     S+  LE    LL  K +     + F + +
Sbjct: 269 AFLRSLYMLKLN-KTSHEDELRRAEDYLS--SINGLEKSSDLLLCKADTLFVRSRFIDVL 325

Query: 123 EAYSEAIKLDGTNHILFSNRSAAF 146
              ++ +++D  N  ++    A+ 
Sbjct: 326 AITTKILEIDPYNLDVYPLHLASL 349

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 49.7 bits (119), Expect = 6e-08
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 87  KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF 146
           +     PS     A    LK++GN    A NF EAI+ Y  AI+LD    + +SN SA +
Sbjct: 12  QLKGLSPSQRQAYAVQ--LKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACY 69

Query: 147 AK 148
             
Sbjct: 70  IS 71

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 29/142 (20%)

Query: 6   CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFV 65
            L+  G +  +I  Y+   +L+   E++              +  G     L     I  
Sbjct: 387 ILTDRGDFDTAIKQYDIAKRLEEVQEKIH-------------VGIG----PLIGKATILA 429

Query: 66  QLQLDPRTKPFLSDPSYVQMIKEIQK----DPSLMTLEAKISLLKDKGNAALQANNFKEA 121
           +      T+       +   IK + K    DP     +AKI L        LQ     EA
Sbjct: 430 RQSSQDPTQLDEEK--FNAAIKLLTKACELDPRSE--QAKIGL----AQLKLQMEKIDEA 481

Query: 122 IEAYSEAIKLDGTNHILFSNRS 143
           IE + ++  L  T        +
Sbjct: 482 IELFEDSAILARTMDEKLQATT 503

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 15/143 (10%), Positives = 46/143 (32%), Gaps = 20/143 (13%)

Query: 6   CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFV 65
             +     +++     + L+  P        +     +       G     L    ++  
Sbjct: 141 SFTNESLQRQACEILRDWLRYTPAYAH----LVTPAEEGAGGAGLGPSKRIL---GSLLS 193

Query: 66  QLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAY 125
                   + FL           ++ DP+ +  + +  L    G     +  + +A++ +
Sbjct: 194 DSLFLEVKELFL---------AAVRLDPTSIDPDVQCGL----GVLFNLSGEYDKAVDCF 240

Query: 126 SEAIKLDGTNHILFSNRSAAFAK 148
           + A+ +   +++L++   A  A 
Sbjct: 241 TAALSVRPNDYLLWNKLGATLAN 263

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 23/164 (14%), Positives = 44/164 (26%), Gaps = 34/164 (20%)

Query: 6   CLSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKDVR-------NQE 44
                G +  +I   E+ ++    +              ++  +A            N  
Sbjct: 117 YFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIY 176

Query: 45  MNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISL 104
           +  + R    A              DP TK  L+ P Y ++I E+         +  I  
Sbjct: 177 IGYLWRARANAA------------QDPDTKQGLAKPYYEKLI-EVCAPGGAKYKDELIEA 223

Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
            +          +  +A  A+   + LD TN             
Sbjct: 224 NEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 23/159 (14%), Positives = 55/159 (34%), Gaps = 23/159 (14%)

Query: 6   CLSYLGRYKESISTYEEGLKLDPNN--------------EQMKEAIKDVRNQEMNDMNRG 51
             +     + +I   +  L+L PNN                 ++A + ++N    +    
Sbjct: 108 TQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYK 167

Query: 52  DPFANLFSDPNIFVQLQLDPRTKPFLSD--PSYVQMIKEIQKDPSLMTLEAKISLLKDKG 109
               N    P +  ++   P     L      Y++      ++  ++  + +  L    G
Sbjct: 168 YLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEA---AHQNGDMIDPDLQTGL----G 220

Query: 110 NAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
                +  F  AI+A++ A+ +   ++ L++   A  A 
Sbjct: 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN 259

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 40.6 bits (95), Expect = 7e-05
 Identities = 19/138 (13%), Positives = 32/138 (23%), Gaps = 37/138 (26%)

Query: 5   SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIF 64
                +G         + GL L P + +    +  V         R    A L       
Sbjct: 31  DAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRV----RWTQQRHAEAAVLLQ----- 81

Query: 65  VQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEA 124
                                 +     P        + L    G+A   A   + A  A
Sbjct: 82  ----------------------QASDAAPEH--PGIALWL----GHALEDAGQAEAAAAA 113

Query: 125 YSEAIKLDGTNHILFSNR 142
           Y+ A +L      + +  
Sbjct: 114 YTRAHQLLPEEPYITAQL 131

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 40.3 bits (94), Expect = 9e-05
 Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 18/77 (23%)

Query: 90  QKDPSLMTLEAKISL---LKDKGNAALQANNFKEAIEAYSEAI---------------KL 131
            K+   M  E K+     +K++G    +   +K+A+  Y + +               K 
Sbjct: 132 AKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKA 191

Query: 132 DGTNHILFSNRSAAFAK 148
                    N +    K
Sbjct: 192 QALRLASHLNLAMCHLK 208

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 19/81 (23%)

Query: 87  KEIQKDPSLMTLEAKISL---LKDKGNAALQANNFKEAIEAYSEAIKLDGTNH------- 136
           +  +K     T E K+     +K++GN   + N   EAI  Y EA+              
Sbjct: 20  QGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQIL 79

Query: 137 ---------ILFSNRSAAFAK 148
                        N +  + K
Sbjct: 80  LDKKKNIEISCNLNLATCYNK 100

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 21/74 (28%)

Query: 96  MTLEAKISL---LKDKGNAALQANNFKEAIEAYSEAI------------------KLDGT 134
              + K+     L+ KGN      ++KEAI+AY +A+                  +LD  
Sbjct: 2   NAEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK 61

Query: 135 NHILFSNRSAAFAK 148
           N  L++N S  +  
Sbjct: 62  NIPLYANMSQCYLN 75

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 4e-04
 Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 19/99 (19%)

Query: 12  RYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMND-MNRGDP-------FANLFSDPN 62
           +YK+ +S +E+    + + + +++  K +   +E++  +   D        F  L S   
Sbjct: 17  QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76

Query: 63  ----IFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMT 97
                FV+  L      FL  P     IK  Q+ PS+MT
Sbjct: 77  EMVQKFVEEVLRI-NYKFLMSP-----IKTEQRQPSMMT 109

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 37.5 bits (88), Expect = 8e-04
 Identities = 7/44 (15%), Positives = 14/44 (31%)

Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
           L    +   Q      +    + AIK +      +SN    + +
Sbjct: 36  LLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKE 79

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	150
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.86
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.83
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.81
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.78
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.77
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.77
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.77
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.76
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.76
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.75
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.74
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.73
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.73
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.72
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.72
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.71
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.71
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.71
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.7
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.7
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.68
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.68
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.67
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.67
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.67
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.65
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.64
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.64
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.63
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.63
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.63
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.62
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.62
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.61
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.61
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.6
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.6
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.6
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.59
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.59
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.59
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.59
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.58
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.58
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.58
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.58
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.58
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.57
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.57
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.57
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.57
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.57
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.56
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.56
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.56
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.56
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.56
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.56
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.55
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.55
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.55
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.55
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.55
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.55
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.55
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.54
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.54
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.54
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.53
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.53
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.53
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.53
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.53
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.52
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.52
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.52
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.52
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.52
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.51
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.51
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.51
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.5
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.5
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.49
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.48
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.48
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.45
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.44
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.44
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.44
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.43
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.43
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.43
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.42
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.41
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.41
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.4
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.39
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.39
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.38
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.36
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.35
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.35
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.35
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.32
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.31
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.3
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.29
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.29
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.28
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.27
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.26
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.26
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.23
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.23
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.22
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.22
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.22
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.22
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.22
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.21
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.21
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.21
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.19
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.19
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.19
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.17
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.17
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.16
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.16
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.16
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.16
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.15
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.15
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.14
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.14
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.14
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.13
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.13
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.13
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.11
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.1
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.09
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.09
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.08
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.08
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.08
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.07
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.07
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.07
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.05
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.05
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.04
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.04
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.04
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.03
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.02
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.01
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.0
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.99
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.99
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.99
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.98
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.97
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.96
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.94
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.94
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.93
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.91
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.89
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.89
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.88
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.88
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.87
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.86
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.85
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.82
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.8
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.77
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.77
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.73
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.69
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.68
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.67
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.67
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.67
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.66
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.65
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.63
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.62
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.61
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.6
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.56
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	98.49
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.48
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.46
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.39
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.38
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.35
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.34
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.29
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.28
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.21
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.18
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.12
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.04
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.01
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.99
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.91
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.8
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.56
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.5
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.1
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.04
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.86
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.83
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.82
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.67
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.54
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.39
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.16
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.12
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.85
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.39
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	94.62
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	93.6
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	92.98
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	92.36
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	92.33
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	91.99
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	91.9
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	91.64
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	91.59
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	91.58
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	91.4
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	90.9
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	90.75
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	89.79
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	89.54
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	88.58
1om2_A	95	Protein (mitochondrial import receptor subunit TOM	88.26
3t5x_A	203	PCI domain-containing protein 2; PCI, mRNA nuclear	87.91
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	87.54
1om2_A	95	Protein (mitochondrial import receptor subunit TOM	87.36
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	86.97
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	86.79
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	86.25
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	84.41
2llv_A	71	Heat shock protein STI1; DP domain, alpha helix, c	83.75
2rpa_A	78	Katanin P60 ATPase-containing subunit A1; AAA ATPa	82.36
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	81.9
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	81.61
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	81.36
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	80.85
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	80.22

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.86  E-value=6e-21  Score=121.22  Aligned_cols=107  Identities=18%  Similarity=0.238  Sum_probs=99.8

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      ..|.+|++.|+|++|+++|++||+++|+++.++..+|.+ ..+|        ++.+|+  ..+.+++.++|++       
T Consensus        18 ~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~--------~~~~A~--~~~~~al~~~p~~-------   80 (126)
T 4gco_A           18 NKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLM--------EFQRAL--DDCDTCIRLDSKF-------   80 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC-------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhc--------cHHHHH--HHHHHHHHhhhhh-------
Confidence            479999999999999999999999999999999999999 9999        778888  8888888888864       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHH
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF  146 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~  146 (150)
                                           +.+|..+|.++...|++++|+++|+++++++|+++.++.+++.|+
T Consensus        81 ---------------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           81 ---------------------IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             ---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             ---------------------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence                                 778999999999999999999999999999999999999998874

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.83  E-value=7.2e-20  Score=122.02  Aligned_cols=133  Identities=15%  Similarity=0.138  Sum_probs=109.2

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC---
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL---   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~---   77 (150)
                      .+|.+|...|+|++|+++|+++|+++|+++.++..+|.+ ..+|        ++.+++  ..+...+...|+.....   
T Consensus        10 ~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--------~~~~a~--~~~~~~~~~~~~~~~~~~~~   79 (184)
T 3vtx_A           10 DIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIG--------LPNDAI--ESLKKFVVLDTTSAEAYYIL   79 (184)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCCCCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--------CHHHHH--HHHHHHHhcCchhHHHHHHH
Confidence            589999999999999999999999999999999999999 9999        667777  77888888888766431   


Q ss_pred             -------CCh-HHHHH-HHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          78 -------SDP-SYVQM-IKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        78 -------~~~-~~~~~-~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                             .+. ..... ...+...|..      +.++..+|.++...|++++|+++|+++++++|+++.+|+++|.+|.+
T Consensus        80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~------~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~  153 (184)
T 3vtx_A           80 GSANFMIDEKQAAIDALQRAIALNTVY------ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEG  153 (184)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHH
Confidence                   110 01111 1113334444      88999999999999999999999999999999999999999999987


Q ss_pred             cC
Q psy3020         149 AI  150 (150)
Q Consensus       149 ~~  150 (150)
                      ++
T Consensus       154 ~g  155 (184)
T 3vtx_A          154 KG  155 (184)
T ss_dssp             TT
T ss_pred             CC
Confidence            63

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.81  E-value=1.3e-19  Score=118.19  Aligned_cols=110  Identities=7%  Similarity=0.001  Sum_probs=93.2

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.+|+..|+|++|+++|+++|+++|+++.+|..+|.+ ..+|        ++.+|+  ..+.+++.++|++       
T Consensus        36 ~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~--------~~~~A~--~~~~~al~~~p~~-------   98 (150)
T 4ga2_A           36 YFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE--------NTDKAV--ECYRRSVELNPTQ-------   98 (150)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC-------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------chHHHH--HHHHHHHHhCCCC-------
Confidence            578888888888888888888888888888888888888 8888        667777  7777777777754       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHH-HHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAY-SEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~-~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                                           +.+|..+|.++.+.|++++|.+.| +++++++|+++.+|..++.++..+
T Consensus        99 ---------------------~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~  147 (150)
T 4ga2_A           99 ---------------------KDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCE  147 (150)
T ss_dssp             ---------------------HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC
T ss_pred             ---------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence                                 778899999999999998888765 899999999999999998887654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.78  E-value=4.2e-19  Score=115.70  Aligned_cols=110  Identities=12%  Similarity=0.046  Sum_probs=98.9

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .||.++...|++++|++.|++++..+|+++.++..+|.+ ..+|        ++.+|+  ..+.+++.++|++       
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~--------~~~~A~--~~~~~al~~~p~~-------   64 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAK--------EYDLAK--KYICTYINVQERD-------   64 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC-------
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHhCCCC-------
Confidence            589999999999999999999999999999999999999 9999        778888  8888888888864       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                                           +.+|..+|.++...|++++|+.+|+++++++|+++.+|+++|.+|.++
T Consensus        65 ---------------------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  112 (150)
T 4ga2_A           65 ---------------------PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKN  112 (150)
T ss_dssp             ---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             ---------------------HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence                                 788999999999999999999999999999999999999999999865

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.77  E-value=2.4e-18  Score=136.75  Aligned_cols=132  Identities=16%  Similarity=0.227  Sum_probs=113.4

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCC-
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD-   79 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~-   79 (150)
                      ++|.+|..+|++++|+++|++||+++|+++.++..+|.+ ..+|        ++.+|+  ..+.+++.++|++...+.. 
T Consensus        14 nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g--------~~~eA~--~~~~~Al~l~P~~~~a~~nL   83 (723)
T 4gyw_A           14 NLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG--------KLQEAL--MHYKEAIRISPTFADAYSNM   83 (723)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHhCCCCHHHHHHH
Confidence            689999999999999999999999999999999999999 9999        778888  8999999999998764211 


Q ss_pred             -------hHHHHHH----HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          80 -------PSYVQMI----KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        80 -------~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                             ..+..++    +.++.+|..      +.+|.++|.++...|++++|+++|++|++++|+++.+++|+|.+|..
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~------~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~  157 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAF------ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQI  157 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHh
Confidence                   1122222    224456655      89999999999999999999999999999999999999999999976


Q ss_pred             c
Q psy3020         149 A  149 (150)
Q Consensus       149 ~  149 (150)
                      +
T Consensus       158 ~  158 (723)
T 4gyw_A          158 V  158 (723)
T ss_dssp             T
T ss_pred             c
Confidence            5

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.77  E-value=5.5e-18  Score=110.86  Aligned_cols=107  Identities=13%  Similarity=0.105  Sum_probs=95.5

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.+++..|++++|+..|+++++++|+++.+|..+|.+ ..+|        .+.+|+  ..+.+++.++|++       
T Consensus        41 ~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g--------~~~~Ai--~~~~~al~l~P~~-------  103 (151)
T 3gyz_A           41 SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE--------QFQQAA--DLYAVAFALGKND-------  103 (151)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHSSSC-------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--------cHHHHH--HHHHHHHhhCCCC-------
Confidence            579999999999999999999999999999999999999 9999        778888  8888888888865       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                                           +.+|.++|.++...|++++|+++|++++++.|+++  ...++..++.
T Consensus       104 ---------------------~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~--~~~~A~~ll~  148 (151)
T 3gyz_A          104 ---------------------YTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK--LKIKAQSYLD  148 (151)
T ss_dssp             ---------------------CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH--HHHHHHHHHH
T ss_pred             ---------------------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH--HHHHHHHHHH
Confidence                                 67899999999999999999999999999999876  4555555543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.77  E-value=3e-18  Score=117.04  Aligned_cols=109  Identities=13%  Similarity=0.155  Sum_probs=100.7

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHH----------------HHHH-HhhhhccCCCCCchhhhhCChHHH
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEA----------------IKDV-RNQEMNDMNRGDPFANLFSDPNIF   64 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~----------------l~~~-~~~g~~~~~~~~~~~~a~~~~~~~   64 (150)
                      ..|.+++..|++++|+..|+++++++|+++.++..                +|.+ ..+|        ++.+|+  ..+.
T Consensus         9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g--------~~~~A~--~~~~   78 (208)
T 3urz_A            9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR--------NYDKAY--LFYK   78 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCC--------CHHHHH--HHHH
Confidence            46889999999999999999999999999999999                9999 8999        778888  8888


Q ss_pred             HhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHH
Q psy3020          65 VQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSA  144 (150)
Q Consensus        65 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~  144 (150)
                      +++.++|++                            +.+|..+|.++...|++++|+++|+++++++|+++.+|+++|.
T Consensus        79 ~al~~~p~~----------------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~  130 (208)
T 3urz_A           79 ELLQKAPNN----------------------------VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGN  130 (208)
T ss_dssp             HHHHHCTTC----------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHCCCC----------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            888888864                            7789999999999999999999999999999999999999999


Q ss_pred             HHHh
Q psy3020         145 AFAK  148 (150)
Q Consensus       145 ~~~~  148 (150)
                      +|+.
T Consensus       131 ~~~~  134 (208)
T 3urz_A          131 YYYL  134 (208)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9864

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.76  E-value=1.1e-17  Score=114.86  Aligned_cols=131  Identities=15%  Similarity=0.114  Sum_probs=109.8

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCC-
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD-   79 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~-   79 (150)
                      .+|.++...|++++|+..|+++++++|+++.++..+|.+ ...|        .+.+|+  ..+.+++.++|++...+.. 
T Consensus        10 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g--------~~~~A~--~~~~~al~~~P~~~~a~~~l   79 (217)
T 2pl2_A           10 RLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLG--------LVNPAL--ENGKTLVARTPRYLGGYMVL   79 (217)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHhCCCcHHHHHHH
Confidence            579999999999999999999999999999999999999 9999        778888  8899999999987653211 


Q ss_pred             ------------------hHHHHHH----HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcc
Q psy3020          80 ------------------PSYVQMI----KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHI  137 (150)
Q Consensus        80 ------------------~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~  137 (150)
                                        +.+...+    ..+..+|..      +.+|..+|.++...|++++|+.+|+++++++ +++.
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~  152 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY------APLHLQRGLVYALLGERDKAEASLKQALALE-DTPE  152 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchH
Confidence                              1111222    113345555      8899999999999999999999999999999 9999


Q ss_pred             hhhcHHHHHHhc
Q psy3020         138 LFSNRSAAFAKA  149 (150)
Q Consensus       138 ~~~n~a~~~~~~  149 (150)
                      +++++|.+|..+
T Consensus       153 ~~~~la~~~~~~  164 (217)
T 2pl2_A          153 IRSALAELYLSM  164 (217)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            999999999865

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.76  E-value=2.2e-17  Score=108.41  Aligned_cols=109  Identities=17%  Similarity=0.209  Sum_probs=100.2

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.+++..|+|++|+..|+++++++|+++.++..++.+ ..+|        ++.+|+  ..+.+++.++|++       
T Consensus        16 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g--------~~~~A~--~~~~~al~~~p~~-------   78 (164)
T 3sz7_A           16 SEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASG--------QHEKAA--EDAELATVVDPKY-------   78 (164)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC-------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHcc--------CHHHHH--HHHHHHHHhCCCC-------
Confidence            479999999999999999999999999999999999999 9999        777888  8888888888854       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                                           +.+|..+|.+++..|++++|+++|+++++++|+++..|++++.+.++
T Consensus        79 ---------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  125 (164)
T 3sz7_A           79 ---------------------SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK  125 (164)
T ss_dssp             ---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             ---------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence                                 77899999999999999999999999999999999999999888654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.75  E-value=1.2e-17  Score=105.89  Aligned_cols=102  Identities=14%  Similarity=0.158  Sum_probs=90.5

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.+++..|+|++|+++|++||+++|+++.++..+|.+ ..+|        ++.+|+  ..+.+++.++|+.....   
T Consensus        13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~--------~~~~A~--~~~~~al~~~~~~~~~~---   79 (127)
T 4gcn_A           13 DLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEK--------KFAECV--QFCEKAVEVGRETRADY---   79 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHHHHTTCCH---
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhh--------hHHHHH--HHHHHHHHhCcccchhh---
Confidence            489999999999999999999999999999999999999 9999        778888  88888888888654421   


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT  134 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  134 (150)
                        ..                ...++..+|.++...|++++|+++|+++++.+|+
T Consensus        80 --~~----------------~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~  115 (127)
T 4gcn_A           80 --KL----------------IAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD  115 (127)
T ss_dssp             --HH----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred             --HH----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence              11                1678999999999999999999999999999995

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.74  E-value=4.3e-17  Score=102.46  Aligned_cols=110  Identities=13%  Similarity=0.130  Sum_probs=100.6

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.+++..|+|++|+..|+++++++|+++.++..+|.+ ..+|        ++.+|+  ..+.+++.++|++       
T Consensus         9 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~--------~~~~A~--~~~~~al~~~p~~-------   71 (126)
T 3upv_A            9 LEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLM--------SFPEAI--ADCNKAIEKDPNF-------   71 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC-------
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhc--------CHHHHH--HHHHHHHHhCCCc-------
Confidence            479999999999999999999999999999999999999 9999        778888  8888888888854       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc------CCCcchhhcHHHHHHhc
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLD------GTNHILFSNRSAAFAKA  149 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~n~a~~~~~~  149 (150)
                                           +.+|..+|.++...|++++|+++|+++++++      |+++.++..++.|..++
T Consensus        72 ---------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           72 ---------------------VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             ---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             ---------------------HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence                                 6789999999999999999999999999999      99999999998887654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.73  E-value=6e-17  Score=111.23  Aligned_cols=131  Identities=10%  Similarity=0.029  Sum_probs=108.3

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hhh-----------hhccCCCCCchhhhhCChHHHHhhcc
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQ-----------EMNDMNRGDPFANLFSDPNIFVQLQL   69 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~-----------g~~~~~~~~~~~~a~~~~~~~~~l~~   69 (150)
                      .+|.++...|++++|+..|+++++++|+++.++..+|.+ ..+           |        ++.+|+  ..+.+++.+
T Consensus        44 ~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g--------~~~~A~--~~~~~al~~  113 (217)
T 2pl2_A           44 WLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKG--------YLEQAL--SVLKDAERV  113 (217)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHH--------HHHHHH--HHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhccccc--------CHHHHH--HHHHHHHHh
Confidence            589999999999999999999999999999999999999 888           8        678888  889999999


Q ss_pred             CCCCCCCCC--------ChHHHHHHHH----HhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcc
Q psy3020          70 DPRTKPFLS--------DPSYVQMIKE----IQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHI  137 (150)
Q Consensus        70 ~~~~~~~~~--------~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~  137 (150)
                      +|++.....        .+.+...+..    +..+ ..      +..+..+|.++...|++++|+..|+++++++|+++.
T Consensus       114 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~  186 (217)
T 2pl2_A          114 NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DT------PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLD  186 (217)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence            998765321        0111111111    2222 33      788999999999999999999999999999999999


Q ss_pred             hhhcHHHHHHhc
Q psy3020         138 LFSNRSAAFAKA  149 (150)
Q Consensus       138 ~~~n~a~~~~~~  149 (150)
                      +++++|.++..+
T Consensus       187 ~~~~la~~~~~~  198 (217)
T 2pl2_A          187 LRVRYASALLLK  198 (217)
T ss_dssp             HHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHc
Confidence            999999998764

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.73  E-value=2.3e-17  Score=122.57  Aligned_cols=131  Identities=8%  Similarity=0.100  Sum_probs=103.3

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCc-hhhhhCChHHHHhhccCCCCCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDP-FANLFSDPNIFVQLQLDPRTKPFLSD   79 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~-~~~a~~~~~~~~~l~~~~~~~~~~~~   79 (150)
                      .+|.++...|++++|+..|+++|+++|++..+|..++.+ ..+|        . +.+|+  ..+.+++.++|++...+..
T Consensus       102 ~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g--------~d~~eAl--~~~~~al~l~P~~~~a~~~  171 (382)
T 2h6f_A          102 YFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQ--------KDLHEEM--NYITAIIEEQPKNYQVWHH  171 (382)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CCHHHHH--HHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcc--------cCHHHHH--HHHHHHHHHCCCCHHHHHH
Confidence            468888999999999999999999999999999999988 8888        5 67788  8888888889987653211


Q ss_pred             ------------hHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHH
Q psy3020          80 ------------PSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFA  147 (150)
Q Consensus        80 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~  147 (150)
                                  ......-+.+..+|..      +.+|..+|.++...|++++|+.+|+++|+++|+++.+|+++|.++.
T Consensus       172 ~g~~~~~~g~~~eAl~~~~kal~ldP~~------~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~  245 (382)
T 2h6f_A          172 RRVLVEWLRDPSQELEFIADILNQDAKN------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVIS  245 (382)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCccC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence                        0111111224445544      8889999999999999999999999999999999999999998887


Q ss_pred             h
Q psy3020         148 K  148 (150)
Q Consensus       148 ~  148 (150)
                      .
T Consensus       246 ~  246 (382)
T 2h6f_A          246 N  246 (382)
T ss_dssp             H
T ss_pred             H
Confidence            6

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.72  E-value=2.6e-17  Score=122.31  Aligned_cols=112  Identities=9%  Similarity=0.081  Sum_probs=91.5

Q ss_pred             HhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCC--------hH-HHHHH----H
Q psy3020          22 EGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD--------PS-YVQMI----K   87 (150)
Q Consensus        22 ~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~--------~~-~~~~~----~   87 (150)
                      .++.++|++..++..++.+ ...|        .+.+|+  ..+.+++.++|++..++..        .. +...+    +
T Consensus        88 ~ai~~~p~~~~a~~~lg~~~~~~g--------~~~~Al--~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~  157 (382)
T 2h6f_A           88 VQIIYSDKFRDVYDYFRAVLQRDE--------RSERAF--KLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITA  157 (382)
T ss_dssp             SEECCCHHHHHHHHHHHHHHHHTC--------CCHHHH--HHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             hhhhCChhhHHHHHHHHHHHHHCC--------ChHHHH--HHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHH
Confidence            5789999999999999999 8888        678888  8999999999998764210        11 12221    2


Q ss_pred             HHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          88 EIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        88 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      .+..+|..      +.+|..+|.++...|++++|+.+|+++|+++|+++.+|+++|.++..+
T Consensus       158 al~l~P~~------~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~  213 (382)
T 2h6f_A          158 IIEEQPKN------YQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEF  213 (382)
T ss_dssp             HHHHCTTC------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHc
Confidence            24445555      899999999999999999999999999999999999999999999865

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.72  E-value=4.4e-17  Score=106.81  Aligned_cols=106  Identities=8%  Similarity=0.104  Sum_probs=91.6

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCC-------cHH-----HHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhc
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPN-------NEQ-----MKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQ   68 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~-------~~~-----a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~   68 (150)
                      ..|.+++..|+|++|+..|++||+++|+       +..     +|..+|.+ ..+|        .+.+|+  ..+.+++.
T Consensus        16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lg--------r~~eAl--~~~~kAL~   85 (159)
T 2hr2_A           16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR--------SFDEAL--HSADKALH   85 (159)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCC--------CHHHHH--HHHHHHHH
Confidence            5799999999999999999999999999       444     99999999 9999        667777  77777777


Q ss_pred             c-------CCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHH----HHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcc
Q psy3020          69 L-------DPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLL----KDKGNAALQANNFKEAIEAYSEAIKLDGTNHI  137 (150)
Q Consensus        69 ~-------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~  137 (150)
                      +       +|++                            +.+|    +++|.++...|++++|+.+|+++++++|++..
T Consensus        86 l~n~~~e~~pd~----------------------------~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~  137 (159)
T 2hr2_A           86 YFNRRGELNQDE----------------------------GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  137 (159)
T ss_dssp             HHHHHCCTTSTH----------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             hhhccccCCCch----------------------------HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence            6       6643                            6677    99999999999999999999999999999987


Q ss_pred             hhhcHHHH
Q psy3020         138 LFSNRSAA  145 (150)
Q Consensus       138 ~~~n~a~~  145 (150)
                      ..--+..+
T Consensus       138 ~~~~~~~~  145 (159)
T 2hr2_A          138 ETPGKERM  145 (159)
T ss_dssp             CCTTHHHH
T ss_pred             HHHHHHHH
Confidence            76655544

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.71  E-value=2.3e-16  Score=102.49  Aligned_cols=105  Identities=10%  Similarity=0.027  Sum_probs=93.8

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.++...|++++|+..|+++++++|+++.++..+|.+ ..+|        ++.+|+  ..+.+++.++|++       
T Consensus        26 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--------~~~~A~--~~~~~al~l~p~~-------   88 (148)
T 2vgx_A           26 SLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMG--------QYDLAI--HSYSYGAVMDIXE-------   88 (148)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHSTTC-------
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHh--------hHHHHH--HHHHHHHhcCCCC-------
Confidence            478999999999999999999999999999999999999 9999        777888  8888888888864       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHH
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSA  144 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~  144 (150)
                                           +.++..+|.++...|++++|+++|+++++++|+++.....+..
T Consensus        89 ---------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  131 (148)
T 2vgx_A           89 ---------------------PRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTR  131 (148)
T ss_dssp             ---------------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             ---------------------chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHH
Confidence                                 6788999999999999999999999999999998876544333

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.71  E-value=8.5e-17  Score=110.50  Aligned_cols=138  Identities=15%  Similarity=0.104  Sum_probs=100.9

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCC-CcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCC-
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDP-NNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS-   78 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p-~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~-   78 (150)
                      .+|.+++..|++++|+..|+++++++| .+..++..+|.+ ..+|        ++.+|+  ..+.+++..+|+....+. 
T Consensus        12 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~--------~~~~A~--~~~~~al~~~p~~~~~~~~   81 (228)
T 4i17_A           12 NEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIK--------KYKEAA--DYFDIAIKKNYNLANAYIG   81 (228)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHTTCSHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhh--------cHHHHH--HHHHHHHHhCcchHHHHHH
Confidence            468888888888888888888888888 788888888888 7888        667777  777778888887654210 


Q ss_pred             -------ChHHHHHH----HHHhcCcchhhhH-HHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC--CcchhhcHHH
Q psy3020          79 -------DPSYVQMI----KEIQKDPSLMTLE-AKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT--NHILFSNRSA  144 (150)
Q Consensus        79 -------~~~~~~~~----~~l~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~n~a~  144 (150)
                             ...+...+    ..+...|...... .-...|..+|.++...|++++|+++|+++++++|+  ++.+++++|.
T Consensus        82 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  161 (228)
T 4i17_A           82 KSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV  161 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence                   01111111    1133334331000 11377999999999999999999999999999999  9999999999


Q ss_pred             HHHhc
Q psy3020         145 AFAKA  149 (150)
Q Consensus       145 ~~~~~  149 (150)
                      +|+.+
T Consensus       162 ~~~~~  166 (228)
T 4i17_A          162 LFYNN  166 (228)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99764

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.71  E-value=1.7e-17  Score=108.48  Aligned_cols=107  Identities=8%  Similarity=-0.071  Sum_probs=95.0

Q ss_pred             HHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHH
Q psy3020           6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQ   84 (150)
Q Consensus         6 ~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~   84 (150)
                      ++..++++-.+-..|+++++++|++++++..+|.+ ..+|        ++.+|+  ..+.+++.++|++           
T Consensus        11 ~~~~l~~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g--------~~~eA~--~~~~~al~~~P~~-----------   69 (151)
T 3gyz_A           11 ISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKG--------RIEEAE--VFFRFLCIYDFYN-----------   69 (151)
T ss_dssp             HHHHHHHHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC-----------
T ss_pred             HHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHhCCCC-----------
Confidence            34555666666778999999999999999999999 9999        778888  8888888888864           


Q ss_pred             HHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhcC
Q psy3020          85 MIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKAI  150 (150)
Q Consensus        85 ~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~~  150 (150)
                                       +..|..+|.++...|+|++|+++|+++++++|+++.+|+++|.||..+.
T Consensus        70 -----------------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg  118 (151)
T 3gyz_A           70 -----------------VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLK  118 (151)
T ss_dssp             -----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTT
T ss_pred             -----------------HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence                             7889999999999999999999999999999999999999999998763

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.70  E-value=2.9e-16  Score=100.91  Aligned_cols=107  Identities=9%  Similarity=0.025  Sum_probs=95.6

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.++...|++++|+..|+++++++|+++.++..+|.+ ..+|        ++.+|+  ..+.+++.++|++       
T Consensus        23 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--------~~~~A~--~~~~~al~~~p~~-------   85 (142)
T 2xcb_A           23 ALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG--------LYEQAL--QSYSYGALMDINE-------   85 (142)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC-------
T ss_pred             HHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHh--------hHHHHH--HHHHHHHhcCCCC-------
Confidence            478999999999999999999999999999999999999 9999        777888  8888888888864       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHH
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF  146 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~  146 (150)
                                           +..+..+|.++...|++++|+++|+++++++|+++.....+..+.
T Consensus        86 ---------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  130 (142)
T 2xcb_A           86 ---------------------PRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAG  130 (142)
T ss_dssp             ---------------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred             ---------------------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence                                 677899999999999999999999999999999987766555443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.70  E-value=4.2e-16  Score=97.73  Aligned_cols=110  Identities=16%  Similarity=0.237  Sum_probs=99.2

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.++...|++++|+..|+++++++|++..++..++.+ ...|        ++.+++  ..+.+++..+|++       
T Consensus        21 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~--------~~~~A~--~~~~~a~~~~~~~-------   83 (133)
T 2lni_A           21 NKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL--------EFQLAL--KDCEECIQLEPTF-------   83 (133)
T ss_dssp             HHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTT--------CHHHHH--HHHHHHHHHCTTC-------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhc--------cHHHHH--HHHHHHHHhCCCc-------
Confidence            478999999999999999999999999999999999999 8888        667777  6676677666642       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                                           +..+..+|.++...|++++|+++|.++++++|++..++.+++.++..+
T Consensus        84 ---------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  131 (133)
T 2lni_A           84 ---------------------IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ  131 (133)
T ss_dssp             ---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred             ---------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence                                 678999999999999999999999999999999999999999999875

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.68  E-value=3.4e-16  Score=98.39  Aligned_cols=98  Identities=12%  Similarity=0.080  Sum_probs=84.2

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.++...|++++|+..|+++++++|+++.++..+|.+ ..+|        .+.+|+  ..+.+++.++|++       
T Consensus        22 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g--------~~~~A~--~~~~~al~l~P~~-------   84 (121)
T 1hxi_A           22 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENE--------KDGLAI--IALNHARMLDPKD-------   84 (121)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC-------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHhCCCC-------
Confidence            478999999999999999999999999999999999999 9999        677888  8888888888864       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcc
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHI  137 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~  137 (150)
                                           +.++..+|.++...|++++|+..|+++++++|+++.
T Consensus        85 ---------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           85 ---------------------IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             ---------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence                                 678999999999999999999999999999998754

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.68  E-value=3.8e-16  Score=102.28  Aligned_cols=108  Identities=16%  Similarity=0.116  Sum_probs=96.8

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhcc------------------CCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChH
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKL------------------DPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPN   62 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~------------------~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~   62 (150)
                      ..|..++..|+|++|+..|++||++                  +|.+..++..+|.+ ..+|        ++.+|+  ..
T Consensus        16 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~--------~~~~A~--~~   85 (162)
T 3rkv_A           16 QKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG--------DLHEAE--ET   85 (162)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHT--------CHHHHH--HH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC--------cHHHHH--HH
Confidence            4799999999999999999999999                  88888999999999 9999        778888  88


Q ss_pred             HHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCc-chhhc
Q psy3020          63 IFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNH-ILFSN  141 (150)
Q Consensus        63 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~n  141 (150)
                      +.+++.++|++                            +.+|..+|.+++..|++++|+.+|+++++++|+++ .+...
T Consensus        86 ~~~al~~~p~~----------------------------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~  137 (162)
T 3rkv_A           86 SSEVLKREETN----------------------------EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVARE  137 (162)
T ss_dssp             HHHHHHHSTTC----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             HHHHHhcCCcc----------------------------hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            88888888864                            77899999999999999999999999999999998 66777


Q ss_pred             HHHHHH
Q psy3020         142 RSAAFA  147 (150)
Q Consensus       142 ~a~~~~  147 (150)
                      ++.+..
T Consensus       138 l~~~~~  143 (162)
T 3rkv_A          138 MKIVTE  143 (162)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.67  E-value=1.9e-15  Score=94.13  Aligned_cols=110  Identities=20%  Similarity=0.190  Sum_probs=98.6

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.++...|++++|+..|+++++++|+++.++..++.+ ...|        ++.+++  ..+.+.+..+|++       
T Consensus        17 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--------~~~~A~--~~~~~~~~~~~~~-------   79 (131)
T 2vyi_A           17 TEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLG--------NYAGAV--QDCERAICIDPAY-------   79 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC-------
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh--------chHHHH--HHHHHHHhcCccC-------
Confidence            478999999999999999999999999999999999999 8888        667777  6666666666643       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                                           +..+..+|.++...|++++|+++|.++++++|+++..+.++|.++..+
T Consensus        80 ---------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  127 (131)
T 2vyi_A           80 ---------------------SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL  127 (131)
T ss_dssp             ---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             ---------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence                                 678899999999999999999999999999999999999999999865

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.67  E-value=1.3e-15  Score=104.49  Aligned_cols=107  Identities=20%  Similarity=0.179  Sum_probs=80.9

Q ss_pred             CCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCC-CCCCCC--------CChHHHHHH----HHHhcC
Q psy3020          27 DPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDP-RTKPFL--------SDPSYVQMI----KEIQKD   92 (150)
Q Consensus        27 ~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~-~~~~~~--------~~~~~~~~~----~~l~~~   92 (150)
                      .|.++.++..+|.+ ...|        ++.+|+  ..+.+++..+| .+....        ....+...+    ..+..+
T Consensus         3 ~~~~~~~~~~~g~~~~~~~--------~~~~A~--~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~   72 (228)
T 4i17_A            3 QTTDPNQLKNEGNDALNAK--------NYAVAF--EKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN   72 (228)
T ss_dssp             -CCCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             cccCHHHHHHHHHHHHHcc--------CHHHHH--HHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Confidence            46678999999999 8999        778888  88888998887 443311        001111221    224455


Q ss_pred             cchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCc-------chhhcHHHHHHhc
Q psy3020          93 PSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNH-------ILFSNRSAAFAKA  149 (150)
Q Consensus        93 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~n~a~~~~~~  149 (150)
                      |..      +.+|..+|.++...|++++|+++|+++++++|+++       .+|+++|.++..+
T Consensus        73 p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~  130 (228)
T 4i17_A           73 YNL------ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQA  130 (228)
T ss_dssp             CSH------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cch------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHh
Confidence            655      88999999999999999999999999999999999       5688888888764

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.67  E-value=1.1e-15  Score=111.51  Aligned_cols=110  Identities=15%  Similarity=0.180  Sum_probs=101.4

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCc---------------HHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHH
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNN---------------EQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFV   65 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~---------------~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~   65 (150)
                      .+|.+++..|+|++|+..|++|++++|++               ..++..+|.+ ..+|        ++.+|+  ..+.+
T Consensus       152 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g--------~~~~A~--~~~~~  221 (336)
T 1p5q_A          152 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ--------AFSAAI--ESCNK  221 (336)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcC--------CHHHHH--HHHHH
Confidence            47999999999999999999999999999               6999999999 9999        778888  88888


Q ss_pred             hhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHH
Q psy3020          66 QLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAA  145 (150)
Q Consensus        66 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~  145 (150)
                      ++.++|++                            +.+|..+|.+++..|++++|+.+|+++++++|+++.++.+++.+
T Consensus       222 al~~~p~~----------------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~  273 (336)
T 1p5q_A          222 ALELDSNN----------------------------EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC  273 (336)
T ss_dssp             HHHHCTTC----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHhCCCc----------------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            88888853                            77899999999999999999999999999999999999999999


Q ss_pred             HHhc
Q psy3020         146 FAKA  149 (150)
Q Consensus       146 ~~~~  149 (150)
                      +..+
T Consensus       274 ~~~~  277 (336)
T 1p5q_A          274 QQRI  277 (336)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.65  E-value=5.2e-15  Score=90.60  Aligned_cols=108  Identities=20%  Similarity=0.246  Sum_probs=96.1

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.++...|++++|+..|+++++.+|+++.++..+|.+ ..+|        ++.++.  ..+.+.+..+|++       
T Consensus         9 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--------~~~~A~--~~~~~~~~~~~~~-------   71 (118)
T 1elw_A            9 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKG--------DYQKAY--EDGCKTVDLKPDW-------   71 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--------CHHHHH--HHHHHHHHHCTTC-------
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhc--------cHHHHH--HHHHHHHHhCccc-------
Confidence            478999999999999999999999999999999999999 8888        667777  6676667666642       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHH
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFA  147 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~  147 (150)
                                           +..+..+|.++...|++++|++.|.++++++|+++.++.+++.+..
T Consensus        72 ---------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           72 ---------------------GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             ---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             ---------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence                                 6788999999999999999999999999999999999999888753

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.64  E-value=1.1e-15  Score=99.95  Aligned_cols=108  Identities=14%  Similarity=0.106  Sum_probs=87.8

Q ss_pred             HHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccC--CCCCchhhhhCChHHHHhhccCCCCCCCCCChHHH
Q psy3020           7 LSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDM--NRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYV   83 (150)
Q Consensus         7 ~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~--~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~   83 (150)
                      ..+.+.|++|++.|+++++++|++++++..+|.+ ..+++.+.  ++...+.+|+  ..+.+++.++|+.          
T Consensus        12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi--~~le~AL~ldP~~----------   79 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAI--TKFEEALLIDPKK----------   79 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH--HHHHHHHHHCTTC----------
T ss_pred             HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHH--HHHHHHHHhCcCc----------
Confidence            4567899999999999999999999999999999 88875420  0001245777  7788888888864          


Q ss_pred             HHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHhhcCCCcchhhcHHH
Q psy3020          84 QMIKEIQKDPSLMTLEAKISLLKDKGNAALQAN-----------NFKEAIEAYSEAIKLDGTNHILFSNRSA  144 (150)
Q Consensus        84 ~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~n~a~  144 (150)
                                        ..+|+++|+++..+|           ++++|+++|++|++++|++...+.++..
T Consensus        80 ------------------~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~  133 (158)
T 1zu2_A           80 ------------------DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM  133 (158)
T ss_dssp             ------------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             ------------------HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence                              788999999999875           8999999999999999999877666544

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.64  E-value=7.7e-15  Score=90.58  Aligned_cols=110  Identities=28%  Similarity=0.373  Sum_probs=96.9

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.++...|++++|++.|+++++.+|++..++..++.+ ...|        .+.+++  ..+.+.+...|++       
T Consensus        14 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--------~~~~A~--~~~~~~~~~~~~~-------   76 (125)
T 1na0_A           14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG--------DYDEAI--EYYQKALELDPNN-------   76 (125)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC-------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhC--------CHHHHH--HHHHHHHHhCCcc-------
Confidence            478999999999999999999999999999999999999 8888        666666  5666566555532       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                                           +..+..+|.++...|++++|+..|.++++++|+++.++.++|.++..+
T Consensus        77 ---------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           77 ---------------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             ---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             ---------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence                                 667889999999999999999999999999999999999999998765

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.63  E-value=2.2e-15  Score=99.99  Aligned_cols=131  Identities=13%  Similarity=0.031  Sum_probs=102.7

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCC-
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD-   79 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~-   79 (150)
                      .+|..+...|++++|+..|+++++++|+++.++..++.+ ...|        ++.+|+  ..+.+.+..+| +..+..- 
T Consensus        11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g--------~~~~A~--~~~~~a~~~~p-~~~~~~~~   79 (176)
T 2r5s_A           11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETK--------QFELAQ--ELLATIPLEYQ-DNSYKSLI   79 (176)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTT--------CHHHHH--HHHTTCCGGGC-CHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCC--------CHHHHH--HHHHHhhhccC-ChHHHHHH
Confidence            468899999999999999999999999999999999999 9999        666777  66766777777 4322100 


Q ss_pred             ------------hHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCC--cchhhcHHHH
Q psy3020          80 ------------PSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTN--HILFSNRSAA  145 (150)
Q Consensus        80 ------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~n~a~~  145 (150)
                                  ......-..+..+|..      +..+..+|.++...|++++|+..|.++++++|+.  +.++.++|.+
T Consensus        80 ~~~~~~~~~~~~~a~~~~~~al~~~P~~------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~  153 (176)
T 2r5s_A           80 AKLELHQQAAESPELKRLEQELAANPDN------FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDI  153 (176)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHH
T ss_pred             HHHHHHhhcccchHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHH
Confidence                        0000011113334444      8999999999999999999999999999999986  5599999999


Q ss_pred             HHhc
Q psy3020         146 FAKA  149 (150)
Q Consensus       146 ~~~~  149 (150)
                      +..+
T Consensus       154 ~~~~  157 (176)
T 2r5s_A          154 LSAL  157 (176)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8765

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.63  E-value=6.9e-15  Score=99.19  Aligned_cols=110  Identities=16%  Similarity=0.154  Sum_probs=98.8

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcH----------------HHHHHHHHH-HhhhhccCCCCCchhhhhCChHHH
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNE----------------QMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIF   64 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~----------------~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~   64 (150)
                      .+|.+++..|+|++|+..|++++++.|+++                .++..+|.+ ..+|        ++.+|+  ..+.
T Consensus        43 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~--------~~~~A~--~~~~  112 (198)
T 2fbn_A           43 EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNK--------DYPKAI--DHAS  112 (198)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhc--------CHHHHH--HHHH
Confidence            478999999999999999999999999987                899999999 8888        677887  7777


Q ss_pred             HhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHH
Q psy3020          65 VQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSA  144 (150)
Q Consensus        65 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~  144 (150)
                      +++.++|++                            +.++..+|.+++..|++++|+++|.++++++|+++.++.+++.
T Consensus       113 ~al~~~p~~----------------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~  164 (198)
T 2fbn_A          113 KVLKIDKNN----------------------------VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL  164 (198)
T ss_dssp             HHHHHSTTC----------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHhCccc----------------------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence            777777743                            6789999999999999999999999999999999999999999


Q ss_pred             HHHhc
Q psy3020         145 AFAKA  149 (150)
Q Consensus       145 ~~~~~  149 (150)
                      ++..+
T Consensus       165 ~~~~~  169 (198)
T 2fbn_A          165 CVNKL  169 (198)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98653

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.63  E-value=6.7e-15  Score=93.13  Aligned_cols=107  Identities=16%  Similarity=0.105  Sum_probs=93.0

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.+++..|++++|+..|+++++++|+++.++..+|.+ ..+|        ++.+|+  ..+.+++.++|++       
T Consensus        14 ~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~--------~~~~A~--~~~~~al~~~p~~-------   76 (137)
T 3q49_B           14 EQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ--------QPEQAL--ADCRRALELDGQS-------   76 (137)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC-------
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhc--------CHHHHH--HHHHHHHHhCchh-------
Confidence            579999999999999999999999999999999999999 9999        667777  7777777777753       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC-----CcchhhcHHHHH
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT-----NHILFSNRSAAF  146 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~n~a~~~  146 (150)
                                           +.+|..+|.++...|++++|+.+|.++++++|+     +......+..+.
T Consensus        77 ---------------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~  126 (137)
T 3q49_B           77 ---------------------VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK  126 (137)
T ss_dssp             ---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred             ---------------------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence                                 778999999999999999999999999999999     555555444443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.62  E-value=4.4e-15  Score=112.53  Aligned_cols=110  Identities=15%  Similarity=0.108  Sum_probs=97.4

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCc---------------HHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHH
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNN---------------EQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFV   65 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~---------------~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~   65 (150)
                      .+|.+++..|+|++|+..|++||+++|++               ..++..+|.+ ..+|        ++.+|+  ..+.+
T Consensus       273 ~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g--------~~~~A~--~~~~~  342 (457)
T 1kt0_A          273 EKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR--------EYTKAV--ECCDK  342 (457)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhc--------CHHHHH--HHHHH
Confidence            47899999999999999999999999998               7899999999 9999        778888  88888


Q ss_pred             hhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHH
Q psy3020          66 QLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAA  145 (150)
Q Consensus        66 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~  145 (150)
                      ++.++|++                            +.+|..+|.+++..|++++|+.+|+++++++|++..++.+++.+
T Consensus       343 al~~~p~~----------------------------~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~  394 (457)
T 1kt0_A          343 ALGLDSAN----------------------------EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMC  394 (457)
T ss_dssp             HHHHSTTC----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHH
T ss_pred             HHhcCCcc----------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            88888864                            77899999999999999999999999999999999999999999


Q ss_pred             HHhc
Q psy3020         146 FAKA  149 (150)
Q Consensus       146 ~~~~  149 (150)
                      +..+
T Consensus       395 ~~~~  398 (457)
T 1kt0_A          395 QKKA  398 (457)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8754

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.62  E-value=1.1e-14  Score=106.00  Aligned_cols=63  Identities=16%  Similarity=0.095  Sum_probs=50.5

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTK   74 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~   74 (150)
                      .+|.++...|++++|+..|+++++++|+++.++..++.+ ..+|        ++.+|+  ..+.+.+..+|+..
T Consensus       104 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g--------~~~~A~--~~~~~al~~~p~~~  167 (365)
T 4eqf_A          104 FLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS--------HQQDAC--EALKNWIKQNPKYK  167 (365)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccc--------cHHHHH--HHHHHHHHhCccch
Confidence            578889999999999999999999999999999999888 8888        556666  66666666666543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.61  E-value=8e-15  Score=102.45  Aligned_cols=130  Identities=14%  Similarity=0.102  Sum_probs=99.7

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCC--
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS--   78 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~--   78 (150)
                      ..|.++...|++++|+..|+++++++|+++.++..++.+ ..+|        ++.+|+  ..+.+++. .|.+.....  
T Consensus         8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~--------~~~~A~--~~~~~a~~-~~~~~~~~~~~   76 (272)
T 3u4t_A            8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELA--------KYDLAQ--KDIETYFS-KVNATKAKSAD   76 (272)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTT--------CHHHHH--HHHHHHHT-TSCTTTCCHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHh--------hHHHHH--HHHHHHHh-ccCchhHHHHH
Confidence            478999999999999999999999999999999999999 9999        667777  77777777 444333210  


Q ss_pred             ----------ChHHHHHH----HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHH-
Q psy3020          79 ----------DPSYVQMI----KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRS-  143 (150)
Q Consensus        79 ----------~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a-  143 (150)
                                ...+...+    ..+..+|..      +..|..+|.++...|++++|+++|+++++++|+++..++++| 
T Consensus        77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~  150 (272)
T 3u4t_A           77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTR------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQ  150 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHH
Confidence                      00111111    112333433      788888999999999999999999999999999999999999 


Q ss_pred             HHHHh
Q psy3020         144 AAFAK  148 (150)
Q Consensus       144 ~~~~~  148 (150)
                      .+|..
T Consensus       151 ~~~~~  155 (272)
T 3u4t_A          151 AYYYN  155 (272)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            77654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.61  E-value=1.8e-14  Score=93.50  Aligned_cols=106  Identities=14%  Similarity=0.200  Sum_probs=94.5

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.++...|++++|+..|+++++++|+++.++..+|.+ ..+|        ++.+++  ..+.+++..+|++       
T Consensus        18 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~--------~~~~A~--~~~~~a~~~~~~~-------   80 (166)
T 1a17_A           18 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE--------CYGYAL--GDATRAIELDKKY-------   80 (166)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC-------
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHhCccc-------
Confidence            578999999999999999999999999999999999999 8888        667777  7777777777643       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHH
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAA  145 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~  145 (150)
                                           +..|..+|.++...|++++|+++|.++++++|+++..+.+++.+
T Consensus        81 ---------------------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~  124 (166)
T 1a17_A           81 ---------------------IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  124 (166)
T ss_dssp             ---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             ---------------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence                                 67889999999999999999999999999999999988666665

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.60  E-value=6.2e-15  Score=112.09  Aligned_cols=132  Identities=18%  Similarity=0.128  Sum_probs=81.1

Q ss_pred             hhhHHHHhhCCH-HHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC---
Q psy3020           2 TTYSCLSYLGRY-KESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF---   76 (150)
Q Consensus         2 ~lg~~~~~~~~~-~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~---   76 (150)
                      .+|.++...|++ ++|++.|+++++++|+++.++..+|.+ ..+|        ++.+|+  ..+.+++.++|+...+   
T Consensus       107 ~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g--------~~~~A~--~~~~~al~~~p~~~~~~~l  176 (474)
T 4abn_A          107 LKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKG--------DVTSAH--TCFSGALTHCKNKVSLQNL  176 (474)
T ss_dssp             HHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--------CHHHHH--HHHHHHHTTCCCHHHHHHH
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHhhCCCHHHHHHH
Confidence            467777777777 777777777777777777777777777 7777        556666  6666666666652110   


Q ss_pred             ----CCC---------hHHHHHHH----HHhcCcchhhhHHHhHHHHHHHHHHHHh--------cCHHHHHHHHHHHHhh
Q psy3020          77 ----LSD---------PSYVQMIK----EIQKDPSLMTLEAKISLLKDKGNAALQA--------NNFKEAIEAYSEAIKL  131 (150)
Q Consensus        77 ----~~~---------~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~g~~~~~~--------~~~~~A~~~~~~al~~  131 (150)
                          ...         ..+..++.    .+..+|..      +.+|..+|.++...        |++++|+++|++++++
T Consensus       177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  250 (474)
T 4abn_A          177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD------GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV  250 (474)
T ss_dssp             HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence                111         11222211    12233333      56666666666666        6666666666666666


Q ss_pred             cC---CCcchhhcHHHHHHhc
Q psy3020         132 DG---TNHILFSNRSAAFAKA  149 (150)
Q Consensus       132 ~p---~~~~~~~n~a~~~~~~  149 (150)
                      +|   +++.+|+++|.+|..+
T Consensus       251 ~p~~~~~~~~~~~lg~~~~~~  271 (474)
T 4abn_A          251 DRKASSNPDLHLNRATLHKYE  271 (474)
T ss_dssp             CGGGGGCHHHHHHHHHHHHHT
T ss_pred             CCCcccCHHHHHHHHHHHHHc
Confidence            66   6666666666666553

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.60  E-value=1.5e-14  Score=101.33  Aligned_cols=113  Identities=8%  Similarity=0.077  Sum_probs=101.4

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCc---HHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNN---EQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~---~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~   77 (150)
                      .+|.+++..|+|++|+..|+++++.+|++   +.++..+|.+ ..+|        ++.+|+  ..+.+.+...|++..  
T Consensus        20 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~--------~~~~A~--~~~~~~l~~~p~~~~--   87 (261)
T 3qky_A           20 ERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNK--------EYLLAA--SEYERFIQIYQIDPR--   87 (261)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTCTT--
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhC--------cHHHHH--HHHHHHHHHCCCCch--
Confidence            57899999999999999999999999999   8999999999 9999        778888  888888888886532  


Q ss_pred             CChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHH--------hcCHHHHHHHHHHHHhhcCCCcchh----------
Q psy3020          78 SDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQ--------ANNFKEAIEAYSEAIKLDGTNHILF----------  139 (150)
Q Consensus        78 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~--------~~~~~~A~~~~~~al~~~p~~~~~~----------  139 (150)
                                       .      +.++..+|.+++.        .|++++|+..|+++++.+|+++..+          
T Consensus        88 -----------------~------~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~  144 (261)
T 3qky_A           88 -----------------V------PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELR  144 (261)
T ss_dssp             -----------------H------HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH
T ss_pred             -----------------h------HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHH
Confidence                             1      6789999999999        9999999999999999999998877          


Q ss_pred             -------hcHHHHHHhc
Q psy3020         140 -------SNRSAAFAKA  149 (150)
Q Consensus       140 -------~n~a~~~~~~  149 (150)
                             +++|.+|.++
T Consensus       145 ~~~~~~~~~la~~~~~~  161 (261)
T 3qky_A          145 AKLARKQYEAARLYERR  161 (261)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHc
Confidence                   8889998865

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.60  E-value=1e-14  Score=107.06  Aligned_cols=131  Identities=16%  Similarity=0.154  Sum_probs=91.8

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCC--
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS--   78 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~--   78 (150)
                      .+|.++...|++++|+..|+++++++|+++.++..++.+ ...|        ++.+|+  ..+.+.+..+|+......  
T Consensus        72 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g--------~~~~A~--~~~~~al~~~p~~~~~~~~l  141 (388)
T 1w3b_A           72 NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG--------DMEGAV--QAYVSALQYNPDLYCVRSDL  141 (388)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHS--------CSSHHH--HHHHHHHHHCTTCTHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHhCCCcHHHHHHH
Confidence            478889999999999999999999999999999999888 8888        556666  677777778887654210  


Q ss_pred             ------ChHHHHHH----HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          79 ------DPSYVQMI----KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        79 ------~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                            ...+...+    ..+...|..      +.+|..+|.++...|++++|+..|+++++++|+++.+++++|.++..
T Consensus       142 ~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~  215 (388)
T 1w3b_A          142 GNLLKALGRLEEAKACYLKAIETQPNF------AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKE  215 (388)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence                  01111111    113334444      66777777777777777777777777777777777777777766654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.59  E-value=1.8e-14  Score=102.80  Aligned_cols=132  Identities=13%  Similarity=0.086  Sum_probs=106.0

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC---
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL---   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~---   77 (150)
                      .+|..+...|++++|+..|+++++++|+++.++..++.+ ...|        ++.+|.  ..+.+.+..+|+.....   
T Consensus       122 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g--------~~~~A~--~~l~~~~~~~p~~~~~~~~~  191 (287)
T 3qou_A          122 QQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALN--------RSEDAE--AVLXTIPLQDQDTRYQGLVA  191 (287)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTT--------CHHHHH--HHHTTSCGGGCSHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCC--------CHHHHH--HHHHhCchhhcchHHHHHHH
Confidence            478899999999999999999999999999999999999 9999        666777  67777777777433210   


Q ss_pred             ---------CChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCC--cchhhcHHHHH
Q psy3020          78 ---------SDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTN--HILFSNRSAAF  146 (150)
Q Consensus        78 ---------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~n~a~~~  146 (150)
                               .........+.+..+|..      +.++..+|.++...|++++|+..|.++++.+|++  ..++.+++.++
T Consensus       192 ~~~l~~~~~~~~a~~~l~~al~~~P~~------~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~  265 (287)
T 3qou_A          192 QIELLXQAADTPEIQQLQQQVAENPED------AALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL  265 (287)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred             HHHHHhhcccCccHHHHHHHHhcCCcc------HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence                     000111112224556655      8999999999999999999999999999999998  88999999998


Q ss_pred             Hhc
Q psy3020         147 AKA  149 (150)
Q Consensus       147 ~~~  149 (150)
                      ..+
T Consensus       266 ~~~  268 (287)
T 3qou_A          266 AAL  268 (287)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            764

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.59  E-value=4.7e-14  Score=102.37  Aligned_cols=133  Identities=14%  Similarity=0.177  Sum_probs=74.8

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCC-
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD-   79 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~-   79 (150)
                      .+|.++...|++++|+..|+++++++|+++.++..++.+ ...|        .+.+|+  ..+.+.+...|+....... 
T Consensus       103 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g--------~~~~A~--~~~~~~~~~~~~~~~~~~~~  172 (368)
T 1fch_A          103 YLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES--------LQRQAC--EILRDWLRYTPAYAHLVTPA  172 (368)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHTSTTTGGGCC--
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHhCcCcHHHHHHH
Confidence            467777777777777777777777777777777777777 6666        555565  5666666666665543310 


Q ss_pred             ----------------------hHHHHHH----HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q psy3020          80 ----------------------PSYVQMI----KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDG  133 (150)
Q Consensus        80 ----------------------~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p  133 (150)
                                            ..+...+    ..+...|..    ..+..+..+|.++...|++++|++.|+++++++|
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  248 (368)
T 1fch_A          173 EEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTS----IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP  248 (368)
T ss_dssp             -------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTS----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCc----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence                                  0000111    112222320    0144555555555555555555555555555555


Q ss_pred             CCcchhhcHHHHHHh
Q psy3020         134 TNHILFSNRSAAFAK  148 (150)
Q Consensus       134 ~~~~~~~n~a~~~~~  148 (150)
                      +++.+++++|.++..
T Consensus       249 ~~~~~~~~l~~~~~~  263 (368)
T 1fch_A          249 NDYLLWNKLGATLAN  263 (368)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            555555555555544

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=4.2e-14  Score=90.12  Aligned_cols=108  Identities=13%  Similarity=0.168  Sum_probs=95.2

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCc---HHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNN---EQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~---~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~   77 (150)
                      .+|.++...|++++|+..|+++++++|++   ..++..++.+ ..+|        ++.+++  ..+.+.+..+|++    
T Consensus        33 ~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~--------~~~~A~--~~~~~~~~~~~~~----   98 (148)
T 2dba_A           33 KEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLE--------DYDKAE--TEASKAIEKDGGD----   98 (148)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHTSCC----
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHc--------cHHHHH--HHHHHHHhhCccC----
Confidence            47899999999999999999999999998   8899999999 8888        667777  6776677666643    


Q ss_pred             CChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHH
Q psy3020          78 SDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFA  147 (150)
Q Consensus        78 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~  147 (150)
                                              +..+..+|.++...|++++|+.+|.++++++|+++.++..++.+.-
T Consensus        99 ------------------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A           99 ------------------------VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             ------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             ------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence                                    6788999999999999999999999999999999999988877653

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.59  E-value=1.7e-14  Score=99.29  Aligned_cols=136  Identities=4%  Similarity=-0.041  Sum_probs=95.2

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHH---HHHHHHHH-HhhhhccC----------CCCCchhhhhCChHHHHhh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQ---MKEAIKDV-RNQEMNDM----------NRGDPFANLFSDPNIFVQL   67 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~---a~~~l~~~-~~~g~~~~----------~~~~~~~~a~~~~~~~~~l   67 (150)
                      .+|.+|...|++++|+..|+++++++|+++.   ++..+|.+ ..++....          .-...+.+|+  ..+.+.+
T Consensus        46 ~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~--~~~~~~l  123 (225)
T 2yhc_A           46 DLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAF--SDFSKLV  123 (225)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHH--HHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHH--HHHHHHH
Confidence            4688888888888888888888888888764   66777766 44320000          0001566777  7788888


Q ss_pred             ccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCc---chhhcHHH
Q psy3020          68 QLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNH---ILFSNRSA  144 (150)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~n~a~  144 (150)
                      ...|++....   .....+..+...        .......+|.+++..|++++|+..|+++++.+|+++   .+++++|.
T Consensus       124 ~~~P~~~~a~---~a~~~l~~~~~~--------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~  192 (225)
T 2yhc_A          124 RGYPNSQYTT---DATKRLVFLKDR--------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMEN  192 (225)
T ss_dssp             TTCTTCTTHH---HHHHHHHHHHHH--------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred             HHCcCChhHH---HHHHHHHHHHHH--------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHH
Confidence            8888876532   122222222111        144557889999999999999999999999999986   67999999


Q ss_pred             HHHhcC
Q psy3020         145 AFAKAI  150 (150)
Q Consensus       145 ~~~~~~  150 (150)
                      +|.+++
T Consensus       193 ~~~~~g  198 (225)
T 2yhc_A          193 AYRQMQ  198 (225)
T ss_dssp             HHHHTT
T ss_pred             HHHHcC
Confidence            998763

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.58  E-value=3.1e-15  Score=118.29  Aligned_cols=131  Identities=8%  Similarity=-0.080  Sum_probs=108.7

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCC-
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD-   79 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~-   79 (150)
                      .+|.++...|++++|+..|+++++++|++..++..+|.+ ..+|        ++.+|+  ..+.+++.++|++...+.. 
T Consensus       438 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g--------~~~~A~--~~~~~al~l~P~~~~~~~~l  507 (681)
T 2pzi_A          438 MEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG--------DYDSAT--KHFTEVLDTFPGELAPKLAL  507 (681)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT--------CHHHHH--HHHHHHHHHSTTCSHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHhCCCChHHHHHH
Confidence            478999999999999999999999999999999999999 9999        778888  8999999999988763211 


Q ss_pred             hHHHH---------H-HHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          80 PSYVQ---------M-IKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        80 ~~~~~---------~-~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                      .....         . -+.+..+|..      +.+|.++|.++...|++++|+++|+++++++|+++.+++++|.+++.
T Consensus       508 g~~~~~~g~~~~~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~  580 (681)
T 2pzi_A          508 AATAELAGNTDEHKFYQTVWSTNDGV------ISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS  580 (681)
T ss_dssp             HHHHHHHTCCCTTCHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred             HHHHHHcCChHHHHHHHHHHHhCCch------HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence            00000         0 1113334444      88999999999999999999999999999999999999999999864

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.58  E-value=2.5e-15  Score=118.82  Aligned_cols=127  Identities=12%  Similarity=0.047  Sum_probs=86.7

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCC--
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS--   78 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~--   78 (150)
                      .+|.+|...|++++|+.+|++|++++|+++.++..+|.+ ..+|++        .+ +  ..+.+++.++|++...+.  
T Consensus       472 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~--------~~-~--~~~~~al~~~P~~~~a~~~l  540 (681)
T 2pzi_A          472 YRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNT--------DE-H--KFYQTVWSTNDGVISAAFGL  540 (681)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCC--------CT-T--CHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCh--------HH-H--HHHHHHHHhCCchHHHHHHH
Confidence            579999999999999999999999999999999999999 999944        44 5  677888888998765321  


Q ss_pred             ------ChHHHHHHHHH----hcCcchhhhHHHhHHHHHHHHHHHHhcCHHHH-HHHHHHHH----hhcCCCcchhhcHH
Q psy3020          79 ------DPSYVQMIKEI----QKDPSLMTLEAKISLLKDKGNAALQANNFKEA-IEAYSEAI----KLDGTNHILFSNRS  143 (150)
Q Consensus        79 ------~~~~~~~~~~l----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A-~~~~~~al----~~~p~~~~~~~n~a  143 (150)
                            ...+..++..+    ..+|..      ..++.++|.+++..++.+++ .+.+.+|+    .+.++++.....++
T Consensus       541 g~~~~~~g~~~~A~~~~~~al~l~P~~------~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l~~  614 (681)
T 2pzi_A          541 ARARSAEGDRVGAVRTLDEVPPTSRHF------TTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQIRA  614 (681)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSCTTSTTH------HHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHhhcccCccc------HHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence                  11223333332    234544      88999999999887775544 45555554    45555666554444


Q ss_pred             HH
Q psy3020         144 AA  145 (150)
Q Consensus       144 ~~  145 (150)
                      .+
T Consensus       615 ~l  616 (681)
T 2pzi_A          615 LV  616 (681)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.58  E-value=2.3e-14  Score=100.37  Aligned_cols=127  Identities=10%  Similarity=0.000  Sum_probs=102.1

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCC---cHHHHHHHHHH-Hh--------hhhccCCCCCchhhhhCChHHHHhhcc
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPN---NEQMKEAIKDV-RN--------QEMNDMNRGDPFANLFSDPNIFVQLQL   69 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~---~~~a~~~l~~~-~~--------~g~~~~~~~~~~~~a~~~~~~~~~l~~   69 (150)
                      .+|.+|...|++++|+..|++++++.|+   .+.++..+|.+ ..        +|        ++.+|+  ..+.+.+..
T Consensus        57 ~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~--------~~~~A~--~~~~~~l~~  126 (261)
T 3qky_A           57 YLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQT--------DTRKAI--EAFQLFIDR  126 (261)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCH--------HHHHHH--HHHHHHHHH
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccch--------hHHHHH--HHHHHHHHH
Confidence            5899999999999999999999999885   46788999999 77        77        677888  888889999


Q ss_pred             CCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCC---cchhhcHHHHH
Q psy3020          70 DPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTN---HILFSNRSAAF  146 (150)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~n~a~~~  146 (150)
                      .|++....   .....+..+..        .....+..+|.+++..|++++|+..|+++++.+|++   +.+++++|.+|
T Consensus       127 ~p~~~~~~---~a~~~~~~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~  195 (261)
T 3qky_A          127 YPNHELVD---DATQKIRELRA--------KLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAY  195 (261)
T ss_dssp             CTTCTTHH---HHHHHHHHHHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred             CcCchhHH---HHHHHHHHHHH--------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence            99876532   12222222211        116678999999999999999999999999999995   46899999999


Q ss_pred             Hhc
Q psy3020         147 AKA  149 (150)
Q Consensus       147 ~~~  149 (150)
                      ..+
T Consensus       196 ~~~  198 (261)
T 3qky_A          196 IAY  198 (261)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            754

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.58  E-value=2.1e-14  Score=105.40  Aligned_cols=132  Identities=17%  Similarity=0.215  Sum_probs=109.6

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCC--
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS--   78 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~--   78 (150)
                      .+|.++...|++++|++.|+++++++|+++.++..++.+ ...|        ++.+|+  ..+.+.+..+|++...+.  
T Consensus       242 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g--------~~~~A~--~~~~~al~~~p~~~~~~~~l  311 (388)
T 1w3b_A          242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG--------SVAEAE--DCYNTALRLCPTHADSLNNL  311 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHS--------CHHHHH--HHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHhhCcccHHHHHHH
Confidence            579999999999999999999999999999999999999 8999        677888  888888888887764311  


Q ss_pred             ------ChHHHHHH----HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          79 ------DPSYVQMI----KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        79 ------~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                            ...+...+    +.+...|..      +.++..+|.++...|++++|++.|+++++++|+++.+|+++|.++.+
T Consensus       312 ~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~  385 (388)
T 1w3b_A          312 ANIKREQGNIEEAVRLYRKALEVFPEF------AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE  385 (388)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHTTSCTTC------HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHH
Confidence                  11111221    113344544      78999999999999999999999999999999999999999999887


Q ss_pred             c
Q psy3020         149 A  149 (150)
Q Consensus       149 ~  149 (150)
                      +
T Consensus       386 ~  386 (388)
T 1w3b_A          386 M  386 (388)
T ss_dssp             T
T ss_pred             c
Confidence            5

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.58  E-value=1.1e-14  Score=100.63  Aligned_cols=61  Identities=11%  Similarity=0.085  Sum_probs=53.0

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCc-------HHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNN-------EQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPR   72 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~-------~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~   72 (150)
                      .+|.++...|++++|+..|+++++++|++       +.++..++.+ ..+|        ++.+|+  ..+.+.+.+.|+
T Consensus        43 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~--~~~~~a~~~~~~  111 (258)
T 3uq3_A           43 NRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLG--------DLKKTI--EYYQKSLTEHRT  111 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCCC
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcc--------cHHHHH--HHHHHHHhcCch
Confidence            57999999999999999999999999987       7899999999 8888        667777  777777776665

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.57  E-value=1.4e-14  Score=98.76  Aligned_cols=122  Identities=16%  Similarity=0.063  Sum_probs=94.3

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCC-h
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD-P   80 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~-~   80 (150)
                      +|.+|...|++++|+..|+++|+++|+++.++..+|.+ ..+|        ++.+|+  ..+.+++.++|++...+.. .
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--------~~~~A~--~~~~~al~~~P~~~~a~~~lg  129 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRG--------QEKDAL--RMYEKILQLEADNLAANIFLG  129 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--------CHHHHH--HHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHcCCCCHHHHHHHH
Confidence            89999999999999999999999999999999999999 9999        778888  8999999999998764321 0


Q ss_pred             HHH--H-------HHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcc
Q psy3020          81 SYV--Q-------MIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHI  137 (150)
Q Consensus        81 ~~~--~-------~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~  137 (150)
                      .+.  .       ......+...   .++...++..+|..+...|+|++|+.+|+++++++|++..
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~  192 (208)
T 3urz_A          130 NYYYLTAEQEKKKLETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEA  192 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHH
Confidence            000  0       0000000000   0012346788999999999999999999999999997543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.57  E-value=7.7e-14  Score=91.53  Aligned_cols=132  Identities=13%  Similarity=0.106  Sum_probs=104.0

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCC-
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD-   79 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~-   79 (150)
                      .+|.++...|++++|+..|+++++.+|+++.++..++.+ ...|        ++.++.  ..+.+.+...|+....... 
T Consensus        13 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~A~--~~~~~~~~~~~~~~~~~~~~   82 (186)
T 3as5_A           13 DKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTG--------AVDRGT--ELLERSLADAPDNVKVATVL   82 (186)
T ss_dssp             HHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHhcCCCCHHHHHHH
Confidence            478899999999999999999999999999999999999 8888        667777  7777778888876542100 


Q ss_pred             -------hHHHH---HHH-HHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          80 -------PSYVQ---MIK-EIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        80 -------~~~~~---~~~-~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                             ..+..   .+. .+...|..      +..+..+|.++...|++++|+++|+++++.+|+++.+++++|.++..
T Consensus        83 a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  156 (186)
T 3as5_A           83 GLTYVQVQKYDLAVPLLIKVAEANPIN------FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQ  156 (186)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCcHh------HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence                   00111   111 12223333      78899999999999999999999999999999999999999999876


Q ss_pred             c
Q psy3020         149 A  149 (150)
Q Consensus       149 ~  149 (150)
                      +
T Consensus       157 ~  157 (186)
T 3as5_A          157 M  157 (186)
T ss_dssp             T
T ss_pred             c
Confidence            5

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.57  E-value=1.8e-14  Score=93.51  Aligned_cols=94  Identities=10%  Similarity=0.035  Sum_probs=85.3

Q ss_pred             HHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchh
Q psy3020          18 STYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLM   96 (150)
Q Consensus        18 ~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   96 (150)
                      ..|+++++++|++..++..+|.+ ...|        ++.+|+  ..+.+++..+|++                       
T Consensus         8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g--------~~~~A~--~~~~~al~~~p~~-----------------------   54 (148)
T 2vgx_A            8 GTIAMLNEISSDTLEQLYSLAFNQYQSG--------XYEDAH--XVFQALCVLDHYD-----------------------   54 (148)
T ss_dssp             CSHHHHTTCCHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC-----------------------
T ss_pred             hhHHHHHcCCHhhHHHHHHHHHHHHHcC--------ChHHHH--HHHHHHHHcCccc-----------------------
Confidence            56899999999999999999999 9999        777888  7777777777754                       


Q ss_pred             hhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          97 TLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        97 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                           +..|..+|.++...|++++|+++|+++++++|+++.+++++|.+|..+
T Consensus        55 -----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~  102 (148)
T 2vgx_A           55 -----SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQX  102 (148)
T ss_dssp             -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT
T ss_pred             -----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence                 778999999999999999999999999999999999999999999875

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.57  E-value=1.8e-14  Score=95.59  Aligned_cols=125  Identities=13%  Similarity=0.068  Sum_probs=98.4

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC---
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL---   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~---   77 (150)
                      .+|.+|...|++++|+..+.+++..+|+++.++..++.+ ...+        ++..+.  ..+.+++..+|++....   
T Consensus        44 ~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~a~--~~~~~a~~~~~~~~~~~~~l  113 (184)
T 3vtx_A           44 KLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMID--------EKQAAI--DALQRAIALNTVYADAYYKL  113 (184)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHhCccchHHHHHH
Confidence            579999999999999999999999999999999999998 8888        566666  77777888888876531   


Q ss_pred             -----CChHHHHHH----HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHH
Q psy3020          78 -----SDPSYVQMI----KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSA  144 (150)
Q Consensus        78 -----~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~  144 (150)
                           ....+..++    +.+..+|..      +.+|..+|.++...|++++|+++|++|++++|+++.  +++|.
T Consensus       114 g~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~--~~lal  181 (184)
T 3vtx_A          114 GLVYDSMGEHDKAIEAYEKTISIKPGF------IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK--YELAL  181 (184)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH--HCSCC
T ss_pred             HHHHHHhCCchhHHHHHHHHHHhcchh------hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH--HHHHh
Confidence                 111122222    224445655      899999999999999999999999999999998753  45543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.57  E-value=1.4e-14  Score=91.65  Aligned_cols=91  Identities=12%  Similarity=0.191  Sum_probs=80.6

Q ss_pred             HHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhH
Q psy3020          21 EEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLE   99 (150)
Q Consensus        21 ~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   99 (150)
                      .++..+||+.++++..+|.. ...|        ++.+|+  ..+.+++.++|++                          
T Consensus         3 ar~a~inP~~a~~~~~~G~~~~~~g--------~~~~A~--~~~~~al~~~p~~--------------------------   46 (126)
T 4gco_A            3 ARLAYINPELAQEEKNKGNEYFKKG--------DYPTAM--RHYNEAVKRDPEN--------------------------   46 (126)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC--------------------------
T ss_pred             hHHHHHCHHHHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHhCCCC--------------------------
Confidence            35667999999999999999 9999        778888  8888888888854                          


Q ss_pred             HHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         100 AKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       100 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                        +..|..+|.+++..|++++|++.|+++++++|+++.+|+++|.+|..+
T Consensus        47 --~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~   94 (126)
T 4gco_A           47 --AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM   94 (126)
T ss_dssp             --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             --HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence              778999999999999999999999999999999999999999999876

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.56  E-value=2e-14  Score=109.56  Aligned_cols=106  Identities=14%  Similarity=0.200  Sum_probs=98.2

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.++...|++++|++.|++|++++|+++.++..+|.+ ..+|        ++.+|+  ..+.+++.++|++       
T Consensus        11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g--------~~~~A~--~~~~~al~l~p~~-------   73 (477)
T 1wao_1           11 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE--------CYGYAL--GDATRAIELDKKY-------   73 (477)
T ss_dssp             SSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHSCTTC-------
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc--------CHHHHH--HHHHHHHHhCCCC-------
Confidence            468889999999999999999999999999999999999 9999        778888  8888888887754       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHH
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAA  145 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~  145 (150)
                                           +.+|..+|.++...|++++|++.|+++++++|+++.++.+++.+
T Consensus        74 ---------------------~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~  117 (477)
T 1wao_1           74 ---------------------IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  117 (477)
T ss_dssp             ---------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred             ---------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence                                 67899999999999999999999999999999999999999988

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.56  E-value=4.4e-14  Score=97.49  Aligned_cols=109  Identities=17%  Similarity=0.204  Sum_probs=73.2

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhc--------------------------cCCCcHHHHHHHHHH-HhhhhccCCCCCch
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLK--------------------------LDPNNEQMKEAIKDV-RNQEMNDMNRGDPF   54 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~--------------------------~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~   54 (150)
                      .+|.++...|++++|+..|+++++                          .+|+++.++..+|.+ ...|        ++
T Consensus        84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~  155 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKS--------DW  155 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTT--------CH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhc--------CH
Confidence            578899999999999999999999                          667777778888887 7777        56


Q ss_pred             hhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC
Q psy3020          55 ANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT  134 (150)
Q Consensus        55 ~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  134 (150)
                      .+|+  ..+.+.+..+|++                            +..+..+|.++...|++++|+++|+++++++|+
T Consensus       156 ~~A~--~~~~~a~~~~~~~----------------------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~  205 (258)
T 3uq3_A          156 PNAV--KAYTEMIKRAPED----------------------------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN  205 (258)
T ss_dssp             HHHH--HHHHHHHHHCTTC----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHH--HHHHHHHhcCccc----------------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence            6666  6676677766654                            344445555555555555555555555555555


Q ss_pred             CcchhhcHHHHHHh
Q psy3020         135 NHILFSNRSAAFAK  148 (150)
Q Consensus       135 ~~~~~~n~a~~~~~  148 (150)
                      ++.+++++|.+|..
T Consensus       206 ~~~~~~~l~~~~~~  219 (258)
T 3uq3_A          206 FVRAYIRKATAQIA  219 (258)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            55555555555443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.56  E-value=2e-14  Score=104.64  Aligned_cols=109  Identities=14%  Similarity=0.133  Sum_probs=91.5

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCC--cHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCC
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPN--NEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD   79 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~--~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~   79 (150)
                      +|.++...|++++|+..|+++++++|+  ++.++..+|.+ ...|        ++.+|+  ..+.+++..+|++      
T Consensus       183 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g--------~~~~A~--~~~~~al~~~p~~------  246 (365)
T 4eqf_A          183 MSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSG--------EFNRAI--DAFNAALTVRPED------  246 (365)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHT--------CHHHHH--HHHHHHHHHCTTC------
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCC--------CHHHHH--HHHHHHHHhCCCC------
Confidence            588999999999999999999999999  99999999999 8889        677787  7777777777753      


Q ss_pred             hHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          80 PSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        80 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                                            +..|..+|.++...|++++|+++|+++++++|+++.+++++|.+|..+
T Consensus       247 ----------------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  294 (365)
T 4eqf_A          247 ----------------------YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINL  294 (365)
T ss_dssp             ----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             ----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC
Confidence                                  667889999999999999999999999999999999999999998765

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.56  E-value=5.1e-14  Score=98.34  Aligned_cols=131  Identities=13%  Similarity=0.104  Sum_probs=91.6

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcH----HHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNE----QMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF   76 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~----~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~   76 (150)
                      .+|.++...|++++|+..|+++++ .|+++    .++..+|.+ ..+|        ++.+|+  ..+.+++..+|+....
T Consensus        42 ~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~--------~~~~A~--~~~~~a~~~~~~~~~~  110 (272)
T 3u4t_A           42 RRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKG--------QDSLAI--QQYQAAVDRDTTRLDM  110 (272)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHSTTCTHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcc--------cHHHHH--HHHHHHHhcCcccHHH
Confidence            467777777777777777777777 44333    346777777 7777        566666  6777777777766542


Q ss_pred             CC--------ChHHHHHHHH----HhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHH
Q psy3020          77 LS--------DPSYVQMIKE----IQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSA  144 (150)
Q Consensus        77 ~~--------~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~  144 (150)
                      +.        ...+...+..    +...|..      +..|..+|...+..+++++|+++|+++++++|+++.+++++|.
T Consensus       111 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~  184 (272)
T 3u4t_A          111 YGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD------PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRAR  184 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHhhcCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            11        0112222222    2223433      8889999966667779999999999999999999999999999


Q ss_pred             HHHhc
Q psy3020         145 AFAKA  149 (150)
Q Consensus       145 ~~~~~  149 (150)
                      ++..+
T Consensus       185 ~~~~~  189 (272)
T 3u4t_A          185 ANAAQ  189 (272)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            98764

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.56  E-value=5.6e-14  Score=108.55  Aligned_cols=110  Identities=15%  Similarity=0.078  Sum_probs=86.9

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.++...|++++|++.|+++++++|++..++..+|.+ ..+|        ++.+|.  ..+.+++..+|++       
T Consensus        28 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--------~~~~A~--~~~~~al~~~p~~-------   90 (568)
T 2vsy_A           28 MLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQ--------RHAEAA--VLLQQASDAAPEH-------   90 (568)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC-------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--------CHHHHH--HHHHHHHhcCCCC-------
Confidence            478888888888888888888888888888888888888 8888        666777  6777777777754       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                                           +..+..+|.++...|++++|++.|+++++++|+++.++.++|.++..+
T Consensus        91 ---------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  138 (568)
T 2vsy_A           91 ---------------------PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL  138 (568)
T ss_dssp             ---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             ---------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence                                 566777777777777888888888888877777777777777777654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.56  E-value=1.2e-13  Score=85.88  Aligned_cols=110  Identities=26%  Similarity=0.393  Sum_probs=89.1

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.++...|++++|+..|+++++.+|++..++..++.+ ...|        .+.++.  ..+.+.+...|+.       
T Consensus         6 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--------~~~~A~--~~~~~~~~~~~~~-------   68 (136)
T 2fo7_A            6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG--------DYDEAI--EYYQKALELDPRS-------   68 (136)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--------CHHHHH--HHHHHHHHHCTTC-------
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhc--------CHHHHH--HHHHHHHHHCCCc-------
Confidence            478999999999999999999999999999999999999 8888        556666  5555555555532       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                                           +..+..+|.++...|++++|++.+.++++.+|+++..++++|.++..+
T Consensus        69 ---------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  116 (136)
T 2fo7_A           69 ---------------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ  116 (136)
T ss_dssp             ---------------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             ---------------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence                                 556777788888888888888888888888888888888888877654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.55  E-value=9.7e-14  Score=86.83  Aligned_cols=108  Identities=11%  Similarity=-0.004  Sum_probs=93.5

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcH---HHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNE---QMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~---~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~   77 (150)
                      .+|.++...|++++|+..|+++++.+|+++   .++..+|.+ ...|        ++.+|+  ..+.+.+..+|++..  
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~--------~~~~A~--~~~~~~~~~~p~~~~--   74 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATR--------NFQLAE--AQFRDLVSRYPTHDK--   74 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTSTT--
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhc--------cHHHHH--HHHHHHHHHCCCCcc--
Confidence            578999999999999999999999999998   799999999 9999        777888  778788888886532  


Q ss_pred             CChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHH
Q psy3020          78 SDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSA  144 (150)
Q Consensus        78 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~  144 (150)
                                       .      +.++..+|.+++..|++++|+..|++++..+|+++....-+..
T Consensus        75 -----------------~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~  118 (129)
T 2xev_A           75 -----------------A------AGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQER  118 (129)
T ss_dssp             -----------------H------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred             -----------------c------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence                             0      5778999999999999999999999999999998876654443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.55  E-value=5.1e-14  Score=105.61  Aligned_cols=133  Identities=13%  Similarity=0.186  Sum_probs=103.4

Q ss_pred             hhHHHHhh--CCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCC-
Q psy3020           3 TYSCLSYL--GRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS-   78 (150)
Q Consensus         3 lg~~~~~~--~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~-   78 (150)
                      +|.++...  ++|++|+++|++|++++|++++++..++.+ ..++...     ...+++  ..+.+++.++|++..... 
T Consensus       142 ~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~-----~~~~al--~~~~~al~l~p~~~~~~~~  214 (472)
T 4g1t_A          142 EGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWP-----PSQNAI--DPLRQAIRLNPDNQYLKVL  214 (472)
T ss_dssp             HHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSC-----CCCCTH--HHHHHHHHHCSSCHHHHHH
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCch-----HHHHHH--HHHHHHhhcCCcchHHHHH
Confidence            35555544  579999999999999999999999999988 7777554     556677  788888999998754210 


Q ss_pred             -------------C-hHHHHHHH-HHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHH
Q psy3020          79 -------------D-PSYVQMIK-EIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRS  143 (150)
Q Consensus        79 -------------~-~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a  143 (150)
                                   + ......++ .+..+|..      +.++..+|.++...|++++|++.|.++++++|+++.+++++|
T Consensus       215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg  288 (472)
T 4g1t_A          215 LALKLHKMREEGEEEGEGEKLVEEALEKAPGV------TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIG  288 (472)
T ss_dssp             HHHHHHHCC------CHHHHHHHHHHHHCSSC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHhCccH------HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHH
Confidence                         0 01111111 13344544      889999999999999999999999999999999999999999


Q ss_pred             HHHHh
Q psy3020         144 AAFAK  148 (150)
Q Consensus       144 ~~~~~  148 (150)
                      .+|..
T Consensus       289 ~~y~~  293 (472)
T 4g1t_A          289 CCYRA  293 (472)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99864

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.55  E-value=5.4e-14  Score=102.03  Aligned_cols=131  Identities=14%  Similarity=0.219  Sum_probs=96.8

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCC--cHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPN--NEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS   78 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~--~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~   78 (150)
                      .+|.++ ..|++++|+..|+++++++|+  ++.++..++.+ ...|        ++.+|+  ..+.+.+..+|+....+.
T Consensus       187 ~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g--------~~~~A~--~~~~~al~~~~~~~~~~~  255 (368)
T 1fch_A          187 ILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG--------EYDKAV--DCFTAALSVRPNDYLLWN  255 (368)
T ss_dssp             TTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHhCcCCHHHHH
Confidence            456666 888888888888888888888  78888888888 7777        666777  677777777776543210


Q ss_pred             --------ChHHHHHH----HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCC-----------
Q psy3020          79 --------DPSYVQMI----KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTN-----------  135 (150)
Q Consensus        79 --------~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~-----------  135 (150)
                              ...+...+    ..+...|..      +.++..+|.++...|++++|++.|+++++++|++           
T Consensus       256 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  329 (368)
T 1fch_A          256 KLGATLANGNQSEEAVAAYRRALELQPGY------IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS  329 (368)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence                    00111111    112234433      7889999999999999999999999999999998           


Q ss_pred             cchhhcHHHHHHhc
Q psy3020         136 HILFSNRSAAFAKA  149 (150)
Q Consensus       136 ~~~~~n~a~~~~~~  149 (150)
                      +..|.++|.+|..+
T Consensus       330 ~~~~~~l~~~~~~~  343 (368)
T 1fch_A          330 ENIWSTLRLALSML  343 (368)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHh
Confidence            88999999998765

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.55  E-value=2.7e-14  Score=108.58  Aligned_cols=113  Identities=12%  Similarity=0.073  Sum_probs=99.0

Q ss_pred             hhhHHHHhh---------CCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hhh--------hhccCCCCCchhhhhCChHH
Q psy3020           2 TTYSCLSYL---------GRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQ--------EMNDMNRGDPFANLFSDPNI   63 (150)
Q Consensus         2 ~lg~~~~~~---------~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~--------g~~~~~~~~~~~~a~~~~~~   63 (150)
                      .+|.++...         |++++|+..|+++++++|+++.++..+|.+ ..+        |        ++.+|+  ..+
T Consensus       175 ~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g--------~~~~A~--~~~  244 (474)
T 4abn_A          175 NLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPK--------ISQQAL--SAY  244 (474)
T ss_dssp             HHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHH--------HHHHHH--HHH
T ss_pred             HHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccc--------hHHHHH--HHH
Confidence            578899999         999999999999999999999999999999 777        6        667777  777


Q ss_pred             HHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHH
Q psy3020          64 FVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRS  143 (150)
Q Consensus        64 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a  143 (150)
                      .+++.++|...                   ..      +..|..+|.++...|++++|+++|+++++++|+++.++.+++
T Consensus       245 ~~al~~~p~~~-------------------~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~  299 (474)
T 4abn_A          245 AQAEKVDRKAS-------------------SN------PDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQ  299 (474)
T ss_dssp             HHHHHHCGGGG-------------------GC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHhCCCcc-------------------cC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            77777776210                   11      788999999999999999999999999999999999999999


Q ss_pred             HHHHhc
Q psy3020         144 AAFAKA  149 (150)
Q Consensus       144 ~~~~~~  149 (150)
                      .++..+
T Consensus       300 ~~~~~l  305 (474)
T 4abn_A          300 QLLEFL  305 (474)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998754

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.55  E-value=8.3e-14  Score=99.72  Aligned_cols=127  Identities=9%  Similarity=0.027  Sum_probs=100.8

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC----
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF----   76 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~----   76 (150)
                      .+|.++...|++++|++.|++     |++.+++..++.+ ..+|        ...+|.  ..+.+.+..+|+....    
T Consensus       106 ~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g--------~~~~A~--~~l~~~~~~~p~~~~~~l~~  170 (291)
T 3mkr_A          106 MAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLD--------RLDLAR--KELKKMQDQDEDATLTQLAT  170 (291)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCC--------CHHHHH--HHHHHHHhhCcCcHHHHHHH
Confidence            478999999999999999998     8999999999999 8889        667777  7778888888875421    


Q ss_pred             ------CCChHHHHHH----HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHH
Q psy3020          77 ------LSDPSYVQMI----KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF  146 (150)
Q Consensus        77 ------~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~  146 (150)
                            .....+...+    +.+...|..      +..|..+|.++...|++++|++.|+++++++|+++.+++|+|.++
T Consensus       171 a~~~l~~~~~~~~eA~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~  244 (291)
T 3mkr_A          171 AWVSLAAGGEKLQDAYYIFQEMADKCSPT------LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLS  244 (291)
T ss_dssp             HHHHHHHCTTHHHHHHHHHHHHHHHSCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHhCchHHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence                  0001111111    113335544      889999999999999999999999999999999999999999988


Q ss_pred             Hhc
Q psy3020         147 AKA  149 (150)
Q Consensus       147 ~~~  149 (150)
                      ..+
T Consensus       245 ~~~  247 (291)
T 3mkr_A          245 QHL  247 (291)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            765

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.55  E-value=6.6e-14  Score=99.70  Aligned_cols=102  Identities=16%  Similarity=0.165  Sum_probs=92.1

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.+++..|++++|+..|+++++++|+++.++..+|.+ ..+|        ++.+|+  ..+.+++.++|++       
T Consensus         9 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~--------~~~~A~--~~~~~al~~~p~~-------   71 (281)
T 2c2l_A            9 EQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ--------QPEQAL--ADCRRALELDGQS-------   71 (281)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHTTSCTTC-------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc--------CHHHHH--HHHHHHHHhCCCC-------
Confidence            479999999999999999999999999999999999999 9999        778888  8888888888854       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhc
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSN  141 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n  141 (150)
                                           +.++..+|.++...|++++|+..|+++++++|+++..+..
T Consensus        72 ---------------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  111 (281)
T 2c2l_A           72 ---------------------VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD  111 (281)
T ss_dssp             ---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCS
T ss_pred             ---------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHH
Confidence                                 6789999999999999999999999999999988655443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.55  E-value=1.3e-14  Score=90.20  Aligned_cols=99  Identities=11%  Similarity=0.114  Sum_probs=83.2

Q ss_pred             hhCCHHHHHHHHHHhhcc---CCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHH
Q psy3020           9 YLGRYKESISTYEEGLKL---DPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQ   84 (150)
Q Consensus         9 ~~~~~~~A~~~~~~aL~~---~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~   84 (150)
                      ..|++++|+.+|++++++   +|+++.++..+|.+ ..+|        ++.+|+  ..+.+++..+|++           
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~--------~~~~A~--~~~~~al~~~p~~-----------   60 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLG--------EYRKAE--AVLANGVKQFPNH-----------   60 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC-----------
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHhCCCc-----------
Confidence            468999999999999999   79999999999999 9999        778888  7888888888764           


Q ss_pred             HHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHH
Q psy3020          85 MIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAA  145 (150)
Q Consensus        85 ~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~  145 (150)
                                       +..+..+|.+++..|++++|++.|.++++.+|+++........+
T Consensus        61 -----------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai  104 (117)
T 3k9i_A           61 -----------------QALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAI  104 (117)
T ss_dssp             -----------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHH
T ss_pred             -----------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence                             67889999999999999999999999999999998776554443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.54  E-value=2.9e-13  Score=91.56  Aligned_cols=132  Identities=14%  Similarity=0.116  Sum_probs=98.6

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC----
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF----   76 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~----   76 (150)
                      .+|.++...|++++|++.|+++++++|+++.++..++.+ ...|        ++.+++  ..+.+.+..+|+....    
T Consensus        13 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~--~~~~~a~~~~~~~~~~~~~l   82 (225)
T 2vq2_A           13 QLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLK--------VNDKAQ--ESFRQALSIKPDSAEINNNY   82 (225)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC--------ChHHHH--HHHHHHHHhCCCChHHHHHH
Confidence            468889999999999999999999999999999999988 8888        666777  6777777777765532    


Q ss_pred             ------C-CCh-HHHHHHHH-Hh--cCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHH
Q psy3020          77 ------L-SDP-SYVQMIKE-IQ--KDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAA  145 (150)
Q Consensus        77 ------~-~~~-~~~~~~~~-l~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~  145 (150)
                            . .+. .....+.. +.  ..|..      ...+..+|.++...|++++|++.|.++++.+|+++.+++++|.+
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  156 (225)
T 2vq2_A           83 GWFLCGRLNRPAESMAYFDKALADPTYPTP------YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELART  156 (225)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHTSTTCSCH------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHcCcCCcch------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence                  1 211 11111221 22  22322      67888888888889999999999999999999888888888888


Q ss_pred             HHhc
Q psy3020         146 FAKA  149 (150)
Q Consensus       146 ~~~~  149 (150)
                      +..+
T Consensus       157 ~~~~  160 (225)
T 2vq2_A          157 KMLA  160 (225)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            8764

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.54  E-value=1.6e-13  Score=92.82  Aligned_cols=107  Identities=14%  Similarity=0.103  Sum_probs=94.6

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.++...|++++|+..|++++  +| ++.++..+|.+ ..+|        ++.+|+  ..+.+++..+|+.       
T Consensus        11 ~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g--------~~~~A~--~~~~~al~~~~~~-------   70 (213)
T 1hh8_A           11 NEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILK--------NMTEAE--KAFTRSINRDKHL-------   70 (213)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC-------
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHhCccc-------
Confidence            57899999999999999999996  44 78899999999 8999        677888  7777777777653       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCc----------------chhhcHHH
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNH----------------ILFSNRSA  144 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~n~a~  144 (150)
                                           +.+|..+|.++...|++++|+++|++++++.|++.                .+++++|.
T Consensus        71 ---------------------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  129 (213)
T 1hh8_A           71 ---------------------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF  129 (213)
T ss_dssp             ---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHH
T ss_pred             ---------------------hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHH
Confidence                                 67899999999999999999999999999998877                99999999


Q ss_pred             HHHhc
Q psy3020         145 AFAKA  149 (150)
Q Consensus       145 ~~~~~  149 (150)
                      +|..+
T Consensus       130 ~~~~~  134 (213)
T 1hh8_A          130 MYAKK  134 (213)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            99875

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.54  E-value=1.6e-13  Score=90.04  Aligned_cols=104  Identities=7%  Similarity=-0.005  Sum_probs=75.4

Q ss_pred             cHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCC--------ChHHHHH---HH-HHhcCcchh
Q psy3020          30 NEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS--------DPSYVQM---IK-EIQKDPSLM   96 (150)
Q Consensus        30 ~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~--------~~~~~~~---~~-~l~~~~~~~   96 (150)
                      ...++..++.+ ...|        ++.+++  ..+.+.+..+|+....+.        ...+...   +. .+...|.. 
T Consensus         7 ~~~~~~~~~~~~~~~~--------~~~~A~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-   75 (186)
T 3as5_A            7 RQVYYRDKGISHAKAG--------RYSQAV--MLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN-   75 (186)
T ss_dssp             HHHHHHHHHHHHHHHT--------CHHHHH--HHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-
T ss_pred             hhHHHHHHHHHHHHhc--------CHHHHH--HHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC-
Confidence            45677888888 8888        667777  677777777776543210        0011111   11 12233433 


Q ss_pred             hhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          97 TLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        97 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                           +..+..+|.++...|++++|++.|.++++.+|+++..++++|.++..+
T Consensus        76 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~  123 (186)
T 3as5_A           76 -----VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNL  123 (186)
T ss_dssp             -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             -----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHc
Confidence                 788999999999999999999999999999999999999999998765

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.53  E-value=3.4e-14  Score=91.16  Aligned_cols=94  Identities=11%  Similarity=0.011  Sum_probs=82.1

Q ss_pred             HHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchh
Q psy3020          18 STYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLM   96 (150)
Q Consensus        18 ~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   96 (150)
                      ..|+++++++|++..++..+|.+ ...|        ++.+|+  ..+.+.+..+|++                       
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g--------~~~~A~--~~~~~al~~~p~~-----------------------   51 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAG--------KWDDAQ--KIFQALCMLDHYD-----------------------   51 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC-----------------------
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHc--------cHHHHH--HHHHHHHHhCCcc-----------------------
Confidence            57899999999999999999999 8889        777888  7777777777754                       


Q ss_pred             hhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          97 TLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        97 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                           +..|..+|.++...|++++|+.+|+++++++|+++.+++++|.||..+
T Consensus        52 -----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~   99 (142)
T 2xcb_A           52 -----ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL   99 (142)
T ss_dssp             -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred             -----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence                 778999999999999999999999999999999999999999999875

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.53  E-value=1.9e-13  Score=93.65  Aligned_cols=132  Identities=12%  Similarity=0.112  Sum_probs=91.6

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCC--
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS--   78 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~--   78 (150)
                      .+|.++...|++++|+..|+++++++|++..++..++.+ ..+|        ++.+|+  ..+.+.+...|+......  
T Consensus        62 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--------~~~~A~--~~~~~~~~~~~~~~~~~~~~  131 (243)
T 2q7f_A           62 NFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKE--------MYKEAK--DMFEKALRAGMENGDLFYML  131 (243)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHTCCSHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhc--------cHHHHH--HHHHHHHHhCCCCHHHHHHH
Confidence            467788888888888888888888888888888888887 7777        556666  666666777776543210  


Q ss_pred             ------ChHHHHH---H-HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          79 ------DPSYVQM---I-KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        79 ------~~~~~~~---~-~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                            ...+...   + ..+...|..      +..+..+|.++...|++++|++.|+++++.+|+++..++++|.+|..
T Consensus       132 a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  205 (243)
T 2q7f_A          132 GTVLVKLEQPKLALPYLQRAVELNEND------TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAY  205 (243)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence                  0011111   1 112223333      67788888888888888888888888888888888888888888876


Q ss_pred             c
Q psy3020         149 A  149 (150)
Q Consensus       149 ~  149 (150)
                      +
T Consensus       206 ~  206 (243)
T 2q7f_A          206 K  206 (243)
T ss_dssp             T
T ss_pred             c
Confidence            4

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.53  E-value=6.8e-14  Score=103.47  Aligned_cols=110  Identities=12%  Similarity=0.150  Sum_probs=100.0

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhc----------------cCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHH
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLK----------------LDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIF   64 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~----------------~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~   64 (150)
                      .+|.+++..|+|++|+..|++||+                ++|.+..++..+|.+ ..+|        ++.+|+  ..+.
T Consensus       228 ~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g--------~~~~A~--~~~~  297 (370)
T 1ihg_A          228 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS--------DWQGAV--DSCL  297 (370)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhcc--------CHHHHH--HHHH
Confidence            478999999999999999999999                899999999999999 9999        777888  8888


Q ss_pred             HhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHH
Q psy3020          65 VQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSA  144 (150)
Q Consensus        65 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~  144 (150)
                      +++.++|+.                            +.+|..+|.++...|++++|++.|+++++++|+++.++.+++.
T Consensus       298 ~al~~~p~~----------------------------~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~  349 (370)
T 1ihg_A          298 EALEIDPSN----------------------------TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK  349 (370)
T ss_dssp             HHHTTCTTC----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHhCchh----------------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            888888753                            7789999999999999999999999999999999999999998


Q ss_pred             HHHhc
Q psy3020         145 AFAKA  149 (150)
Q Consensus       145 ~~~~~  149 (150)
                      ++..+
T Consensus       350 ~~~~~  354 (370)
T 1ihg_A          350 VKQKI  354 (370)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87653

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.53  E-value=9.1e-14  Score=99.92  Aligned_cols=136  Identities=18%  Similarity=0.227  Sum_probs=95.1

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC---
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL---   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~---   77 (150)
                      .+|.++...|++++|+..|+++++++|+++.++..++.+ ...|        ++.+++  ..+.+.+..+|+.....   
T Consensus       159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--------~~~~A~--~~~~~a~~~~~~~~~~~~~~  228 (359)
T 3ieg_A          159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLG--------DHELSL--SEVRECLKLDQDHKRCFAHY  228 (359)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHT--------CHHHHH--HHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHhhCccchHHHHHH
Confidence            478888888999999999999999999989888888888 8888        666777  77777777788765421   


Q ss_pred             -----------------CChHHHHHHH----HHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCc
Q psy3020          78 -----------------SDPSYVQMIK----EIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNH  136 (150)
Q Consensus        78 -----------------~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~  136 (150)
                                       ....+...+.    .+...|...  ......+..+|.++...|++++|++.|+++++++|+++
T Consensus       229 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  306 (359)
T 3ieg_A          229 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVA--EYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNV  306 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch--HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccH
Confidence                             0001111111    122222220  01134566788888888888888888888888888888


Q ss_pred             chhhcHHHHHHhc
Q psy3020         137 ILFSNRSAAFAKA  149 (150)
Q Consensus       137 ~~~~n~a~~~~~~  149 (150)
                      .+++++|.+|..+
T Consensus       307 ~~~~~~~~~~~~~  319 (359)
T 3ieg_A          307 NALKDRAEAYLIE  319 (359)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHc
Confidence            8888888888764

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.53  E-value=1.6e-13  Score=94.13  Aligned_cols=130  Identities=14%  Similarity=0.131  Sum_probs=101.6

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCC--
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS--   78 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~--   78 (150)
                      .+|.++...|++++|++.|+++++++|+++.++..++.+ ...|        ++.+|+  ..+.+.+...|+......  
T Consensus        96 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~--------~~~~A~--~~~~~~~~~~~~~~~~~~~l  165 (243)
T 2q7f_A           96 GAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLE--------QPKLAL--PYLQRAVELNENDTEARFQF  165 (243)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTS--------CHHHHH--HHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc--------cHHHHH--HHHHHHHHhCCccHHHHHHH
Confidence            478999999999999999999999999999999999999 8888        667777  777888888887654210  


Q ss_pred             --------C-hHHHHHH-HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHH
Q psy3020          79 --------D-PSYVQMI-KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFA  147 (150)
Q Consensus        79 --------~-~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~  147 (150)
                              + ......+ ..+...|..      +..+..+|.++...|++++|+++|+++++++|+++.++..++.+..
T Consensus       166 ~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~  238 (243)
T 2q7f_A          166 GMCLANEGMLDEALSQFAAVTEQDPGH------ADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGH  238 (243)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC---
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHh
Confidence                    0 0111111 112333433      7889999999999999999999999999999999999988876643

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.52  E-value=2e-13  Score=84.88  Aligned_cols=115  Identities=12%  Similarity=0.135  Sum_probs=95.0

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.++...|++++|+..|+++++++|+++.++..+|.+ ..+|        ++.+++  ..+.+.+...|+....    
T Consensus         9 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~--------~~~~A~--~~~~~~~~~~~~~~~~----   74 (131)
T 1elr_A            9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKG--------DYNKCR--ELCEKAIEVGRENRED----   74 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--------CHHHHH--HHHHHHHHHHHHSTTC----
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhc--------cHHHHH--HHHHHHHhhccccchh----
Confidence            579999999999999999999999999999999999999 8888        667777  6666666665543210    


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                       ..                ..+..+..+|.++...|++++|+++|+++++++| ++..+..++.+...
T Consensus        75 -~~----------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~  124 (131)
T 1elr_A           75 -YR----------------QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI  124 (131)
T ss_dssp             -HH----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred             -HH----------------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence             00                1167889999999999999999999999999999 68888888877653

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.52  E-value=1.2e-13  Score=83.72  Aligned_cols=99  Identities=18%  Similarity=0.095  Sum_probs=87.6

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.++...|++++|+..|+++++++|++..++..+|.+ ..+|        .+.+|+  ..+.+.+..+|+..      
T Consensus        11 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~--------~~~~A~--~~~~~a~~~~~~~~------   74 (112)
T 2kck_A           11 LEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLE--------RYEEAV--DCYNYVINVIEDEY------   74 (112)
T ss_dssp             GHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHTSCCTT------
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcc--------CHHHHH--HHHHHHHHhCcccc------
Confidence            589999999999999999999999999999999999999 8888        667777  77777777777510      


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHh-cCHHHHHHHHHHHHhhcCCCc
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQA-NNFKEAIEAYSEAIKLDGTNH  136 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~~  136 (150)
                                    .      ...+..+|.++... |++++|++++++++..+|.++
T Consensus        75 --------------~------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           75 --------------N------KDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             --------------C------HHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             --------------h------HHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence                          1      67899999999999 999999999999999999875

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.52  E-value=3.3e-13  Score=91.26  Aligned_cols=124  Identities=10%  Similarity=-0.006  Sum_probs=100.4

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.+|...|++++|+..|+++++++|+++.++..+|.+ ..+|        ++.+|+  ..+.+++...|++...... 
T Consensus        42 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~--------~~~~A~--~~~~~al~~~~~~~~~~~~-  110 (213)
T 1hh8_A           42 NIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE--------KYDLAI--KDLKEALIQLRGNQLIDYK-  110 (213)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHTTTTCSEEECG-
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc--------cHHHHH--HHHHHHHHhCCCccHHHHH-
Confidence            589999999999999999999999999999999999999 9999        778888  8888888888876521100 


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHH
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFA  147 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~  147 (150)
                           ...+...|..      +..+..+|.++...|++++|+++|.++++++|++.......+...+
T Consensus       111 -----~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~  166 (213)
T 1hh8_A          111 -----ILGLQFKLFA------CEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECV  166 (213)
T ss_dssp             -----GGTBCCEEEH------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHH
T ss_pred             -----HhccccCccc------hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHHHHHH
Confidence                 0000112222      7889999999999999999999999999999988776666665544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.52  E-value=2.8e-13  Score=96.53  Aligned_cols=61  Identities=8%  Similarity=-0.097  Sum_probs=33.9

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCC
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRT   73 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~   73 (150)
                      +|.++...|++++|+..|+++++++|++..++..++.+ ...|        ++.+|.  ..+.+++..+|++
T Consensus       131 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~--~~~~~al~~~~~~  192 (330)
T 3hym_B          131 YGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN--------NSKLAE--RFFSQALSIAPED  192 (330)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHTTCTTC
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh--------hHHHHH--HHHHHHHHhCCCC
Confidence            45555555666666666666666655555555555555 5555        444444  4555555555544

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.52  E-value=2.8e-13  Score=94.46  Aligned_cols=103  Identities=14%  Similarity=0.056  Sum_probs=78.5

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.++...|++++|+..|+++++++|+++.++..+|.+ ...|        ++.+|+  ..+.+++..+|+.       
T Consensus        48 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~--------~~~~A~--~~~~~al~~~~~~-------  110 (275)
T 1xnf_A           48 ERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG--------NFDAAY--EAFDSVLELDPTY-------  110 (275)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC-------
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcc--------CHHHHH--HHHHHHHhcCccc-------
Confidence            478899999999999999999999999999999999999 8888        667777  7777777777754       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcH
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNR  142 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~  142 (150)
                                           +.++..+|.+++..|++++|+++|.++++++|+++..+...
T Consensus       111 ---------------------~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  151 (275)
T 1xnf_A          111 ---------------------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWL  151 (275)
T ss_dssp             ---------------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             ---------------------cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHH
Confidence                                 44566666666666666666666666666666665444333

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.51  E-value=3.2e-13  Score=97.08  Aligned_cols=132  Identities=15%  Similarity=0.135  Sum_probs=95.8

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCC---CCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDP---RTKPFL   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~---~~~~~~   77 (150)
                      .+|.++...|++++|+..|+++++++|+++.++..+|.+ ...|        ++.+|+  ..+.+.+..+|   +.....
T Consensus        42 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~--~~~~~~~~~~~~~~~~~~~~  111 (359)
T 3ieg_A           42 RRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG--------KLDEAE--DDFKKVLKSNPSEQEEKEAE  111 (359)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--------CHHHHH--HHHHHHHTSCCCHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC--------ChHHHH--HHHHHHHhcCCcccChHHHH
Confidence            467778888888888888888888888888888888887 7777        666777  77777788777   443321


Q ss_pred             CC--------------------hHHHHHH----HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q psy3020          78 SD--------------------PSYVQMI----KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDG  133 (150)
Q Consensus        78 ~~--------------------~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p  133 (150)
                      ..                    ..+...+    ..+...|..      +..+..+|.++...|++++|++.|.++++++|
T Consensus       112 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  185 (359)
T 3ieg_A          112 SQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD------AELRELRAECFIKEGEPRKAISDLKAASKLKS  185 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            00                    0011111    112233333      78888999999999999999999999999999


Q ss_pred             CCcchhhcHHHHHHhc
Q psy3020         134 TNHILFSNRSAAFAKA  149 (150)
Q Consensus       134 ~~~~~~~n~a~~~~~~  149 (150)
                      +++..++++|.++..+
T Consensus       186 ~~~~~~~~la~~~~~~  201 (359)
T 3ieg_A          186 DNTEAFYKISTLYYQL  201 (359)
T ss_dssp             CCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHc
Confidence            9999999999998764

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.51  E-value=2.7e-13  Score=96.63  Aligned_cols=133  Identities=14%  Similarity=-0.024  Sum_probs=102.4

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCC-
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD-   79 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~-   79 (150)
                      .+|.++...|++++|+..|+++++.+|+++.++..++.+ ...|+       .+.+|.  ..+.+++..+|+....... 
T Consensus        61 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~A~--~~~~~a~~~~~~~~~~~~~l  131 (330)
T 3hym_B           61 VHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGH-------KNEHAR--RYLSKATTLEKTYGPAWIAY  131 (330)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCS-------CHHHHH--HHHHHHHTTCTTCTHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhh-------hHHHHH--HHHHHHHHhCCccHHHHHHH
Confidence            367889999999999999999999999999999999998 77772       235566  6777788888876653110 


Q ss_pred             -------hHHHHHH----HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          80 -------PSYVQMI----KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        80 -------~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                             ..+...+    ..+...|..      ...+..+|.++...|++++|++.|+++++++|+++.+++++|.++..
T Consensus       132 ~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  205 (330)
T 3hym_B          132 GHSFAVESEHDQAMAAYFTAAQLMKGC------HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ  205 (330)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHTTTC------SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhcccc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence                   0111111    112223333      67888899999999999999999999999999999999999999986


Q ss_pred             c
Q psy3020         149 A  149 (150)
Q Consensus       149 ~  149 (150)
                      +
T Consensus       206 ~  206 (330)
T 3hym_B          206 N  206 (330)
T ss_dssp             T
T ss_pred             c
Confidence            5

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.51  E-value=8.3e-13  Score=93.98  Aligned_cols=131  Identities=16%  Similarity=0.149  Sum_probs=79.5

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCC-
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD-   79 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~-   79 (150)
                      .+|.++...|++++|+..|+++++++|+++.++..++.+ ...|        ++.+|+  ..+.+.+..+|+....... 
T Consensus        60 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~--------~~~~A~--~~~~~~~~~~~~~~~~~~~~  129 (327)
T 3cv0_A           60 SLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH--------NANAAL--ASLRAWLLSQPQYEQLGSVN  129 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHTSTTTTTC----
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHhCCccHHHHHHH
Confidence            467888888888888888888888888888888888888 7777        556666  6666667777765532210 


Q ss_pred             ----------------------hHHHHHHHH----HhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q psy3020          80 ----------------------PSYVQMIKE----IQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDG  133 (150)
Q Consensus        80 ----------------------~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p  133 (150)
                                            ..+...+..    +...|..      +..+..+|.++...|++++|++.|.++++.+|
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  203 (327)
T 3cv0_A          130 LQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND------AQLHASLGVLYNLSNNYDSAAANLRRAVELRP  203 (327)
T ss_dssp             ----------------CCTTSHHHHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence                                  111111111    2223322      45555555555555555555555555555555


Q ss_pred             CCcchhhcHHHHHHh
Q psy3020         134 TNHILFSNRSAAFAK  148 (150)
Q Consensus       134 ~~~~~~~n~a~~~~~  148 (150)
                      +++.++.++|.++..
T Consensus       204 ~~~~~~~~l~~~~~~  218 (327)
T 3cv0_A          204 DDAQLWNKLGATLAN  218 (327)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHH
Confidence            555555555555543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.50  E-value=3e-13  Score=96.27  Aligned_cols=128  Identities=10%  Similarity=0.205  Sum_probs=92.9

Q ss_pred             HHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCC------
Q psy3020           6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS------   78 (150)
Q Consensus         6 ~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~------   78 (150)
                      ++...|++++|+..|+++++.+|+++.++..++.+ ...|        ++.+|+  ..+.+.+..+|+......      
T Consensus       147 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~--------~~~~A~--~~~~~~~~~~~~~~~~~~~l~~~~  216 (327)
T 3cv0_A          147 FFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSN--------NYDSAA--ANLRRAVELRPDDAQLWNKLGATL  216 (327)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc--------cHHHHH--HHHHHHHHhCCCcHHHHHHHHHHH
Confidence            36777788888888888888888888888888777 7777        556666  666666777776543210      


Q ss_pred             --ChHHHHH---H-HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC------------Ccchhh
Q psy3020          79 --DPSYVQM---I-KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT------------NHILFS  140 (150)
Q Consensus        79 --~~~~~~~---~-~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~  140 (150)
                        ...+...   + ..+...|..      +..+..+|.++...|++++|++.|+++++++|+            ++..|.
T Consensus       217 ~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  290 (327)
T 3cv0_A          217 ANGNRPQEALDAYNRALDINPGY------VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWD  290 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHH
Confidence              0011111   1 112233433      788999999999999999999999999999999            799999


Q ss_pred             cHHHHHHhc
Q psy3020         141 NRSAAFAKA  149 (150)
Q Consensus       141 n~a~~~~~~  149 (150)
                      ++|.++..+
T Consensus       291 ~l~~~~~~~  299 (327)
T 3cv0_A          291 FFRMLLNVM  299 (327)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999999875

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.50  E-value=5e-13  Score=92.40  Aligned_cols=132  Identities=16%  Similarity=0.134  Sum_probs=78.1

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC---
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL---   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~---   77 (150)
                      .+|.++...|++++|+..|+++++++|+++.++..++.+ ...|        ++.+|+  ..+.+.+..+|+.....   
T Consensus        42 ~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~--------~~~~A~--~~~~~a~~~~~~~~~~~~~l  111 (252)
T 2ho1_A           42 QLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEM--------EPKLAD--EEYRKALASDSRNARVLNNY  111 (252)
T ss_dssp             HHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHHCcCcHHHHHHH
Confidence            356677777777777777777777777777777777777 6666        455555  55556666666543311   


Q ss_pred             -------CC-hHHHHHHHH-Hh--cCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHH
Q psy3020          78 -------SD-PSYVQMIKE-IQ--KDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF  146 (150)
Q Consensus        78 -------~~-~~~~~~~~~-l~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~  146 (150)
                             .+ ......+.. +.  ..|..      +..+..+|.++...|++++|+++|.++++.+|+++.+++++|.++
T Consensus       112 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  185 (252)
T 2ho1_A          112 GGFLYEQKRYEEAYQRLLEASQDTLYPER------SRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLL  185 (252)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTCTTCTTH------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhCccCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence                   00 001111111 11  12222      566666666666677777777777777777776666666666666


Q ss_pred             Hhc
Q psy3020         147 AKA  149 (150)
Q Consensus       147 ~~~  149 (150)
                      ..+
T Consensus       186 ~~~  188 (252)
T 2ho1_A          186 YKE  188 (252)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.49  E-value=6.4e-13  Score=87.72  Aligned_cols=100  Identities=21%  Similarity=0.248  Sum_probs=63.5

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-H-hhhhccCCCCCch--hhhhCChHHHHhhccCCCCCCCCC
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-R-NQEMNDMNRGDPF--ANLFSDPNIFVQLQLDPRTKPFLS   78 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~-~~g~~~~~~~~~~--~~a~~~~~~~~~l~~~~~~~~~~~   78 (150)
                      +|.++...|++++|+..|+++++++|+++.++..++.+ . ..|        .+  .+++  ..+.+.+..+|+      
T Consensus        50 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~--------~~~~~~A~--~~~~~al~~~p~------  113 (177)
T 2e2e_A           50 LGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQAS--------QHMTAQTR--AMIDKALALDSN------  113 (177)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTT--------TCCCHHHH--HHHHHHHHHCTT------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcC--------CcchHHHH--HHHHHHHHhCCC------
Confidence            45555555555555555555555555555555555544 2 333        22  3333  333333333332      


Q ss_pred             ChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhh
Q psy3020          79 DPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFS  140 (150)
Q Consensus        79 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  140 (150)
                                      .      +.++..+|.+++..|++++|+..|.++++++|+++....
T Consensus       114 ----------------~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  153 (177)
T 2e2e_A          114 ----------------E------ITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ  153 (177)
T ss_dssp             ----------------C------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred             ----------------c------HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence                            2      678899999999999999999999999999999876543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.48  E-value=5.2e-14  Score=102.79  Aligned_cols=108  Identities=12%  Similarity=0.119  Sum_probs=81.9

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcH-----------------HHHHHHHHH-HhhhhccCCCCCchhhhhCChHH
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNE-----------------QMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNI   63 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~-----------------~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~   63 (150)
                      .+|.+++..|+|++|+..|++|++++|++.                 .++..+|.+ ..+|        ++.+|+  ..+
T Consensus       184 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g--------~~~~A~--~~~  253 (338)
T 2if4_A          184 MDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLK--------RYDEAI--GHC  253 (338)
T ss_dssp             HHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTT--------CCHHHH--HHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcC--------CHHHHH--HHH
Confidence            478999999999999999999999999988                 488999999 8888        667788  788


Q ss_pred             HHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHH
Q psy3020          64 FVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRS  143 (150)
Q Consensus        64 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a  143 (150)
                      .+++.++|++                            +.+|..+|.++...|++++|+.+|+++++++|+++.++.+++
T Consensus       254 ~~al~~~p~~----------------------------~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~  305 (338)
T 2if4_A          254 NIVLTEEEKN----------------------------PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELR  305 (338)
T ss_dssp             HHHHHHCTTC----------------------------HHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------
T ss_pred             HHHHHhCCCC----------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            8888877753                            778999999999999999999999999999999999999998


Q ss_pred             HHHH
Q psy3020         144 AAFA  147 (150)
Q Consensus       144 ~~~~  147 (150)
                      .+..
T Consensus       306 ~l~~  309 (338)
T 2if4_A          306 ALAE  309 (338)
T ss_dssp             ----
T ss_pred             HHHH
Confidence            7743

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.48  E-value=3.6e-14  Score=93.78  Aligned_cols=107  Identities=12%  Similarity=0.116  Sum_probs=89.7

Q ss_pred             HHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHH
Q psy3020           5 SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYV   83 (150)
Q Consensus         5 ~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~   83 (150)
                      ..+...|++++|+..|+++++.+|+++.++..+|.+ ...|        ++.+|+  ..+.+++..+|++          
T Consensus        18 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~--------~~~~A~--~~~~~al~~~p~~----------   77 (177)
T 2e2e_A           18 HQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQN--------DYSNSL--LAYRQALQLRGEN----------   77 (177)
T ss_dssp             CCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHHCSC----------
T ss_pred             hhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHcCCCC----------
Confidence            345678999999999999999999999999999999 8888        667777  6777777766643          


Q ss_pred             HHHHHHhcCcchhhhHHHhHHHHHHHHH-HHHhcCH--HHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          84 QMIKEIQKDPSLMTLEAKISLLKDKGNA-ALQANNF--KEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        84 ~~~~~l~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~--~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                                        +..+..+|.+ ++..|++  ++|+..|.++++++|+++.+++++|.+|..+
T Consensus        78 ------------------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  128 (177)
T 2e2e_A           78 ------------------AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQ  128 (177)
T ss_dssp             ------------------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             ------------------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence                              6778899999 7799999  9999999999999999999999999999875

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.45  E-value=5.3e-13  Score=99.30  Aligned_cols=132  Identities=14%  Similarity=0.130  Sum_probs=82.5

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCC---CCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTK---PFL   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~---~~~   77 (150)
                      .+|.++...|++++|+..|+++++++|+++.++..++.+ ..+|        .+.+|.  ..+.+.+..+|+..   ...
T Consensus        65 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g--------~~~~A~--~~~~~~~~~~~~~~~~~~~~  134 (450)
T 2y4t_A           65 RRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQG--------KLDEAE--DDFKKVLKSNPSENEEKEAQ  134 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHTSCCCHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHhcCCCChhhHHHH
Confidence            356677777777777777777777777777777777777 6666        555666  66666666666544   210


Q ss_pred             C--------------------ChHHHHHH----HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q psy3020          78 S--------------------DPSYVQMI----KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDG  133 (150)
Q Consensus        78 ~--------------------~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p  133 (150)
                      .                    ...+...+    ..+...|..      +..+..+|.++...|++++|++.|.++++.+|
T Consensus       135 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  208 (450)
T 2y4t_A          135 SQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD------AELRELRAECFIKEGEPRKAISDLKAASKLKN  208 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            0                    00000111    011223322      56677777777777777777777777777777


Q ss_pred             CCcchhhcHHHHHHhc
Q psy3020         134 TNHILFSNRSAAFAKA  149 (150)
Q Consensus       134 ~~~~~~~n~a~~~~~~  149 (150)
                      +++.+++++|.+|..+
T Consensus       209 ~~~~~~~~l~~~~~~~  224 (450)
T 2y4t_A          209 DNTEAFYKISTLYYQL  224 (450)
T ss_dssp             SCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHc
Confidence            7777777777777654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.44  E-value=3.3e-12  Score=88.24  Aligned_cols=132  Identities=12%  Similarity=0.077  Sum_probs=101.1

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhc--cCCCCCCCC-
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQ--LDPRTKPFL-   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~--~~~~~~~~~-   77 (150)
                      .+|.++...|++++|++.|+++++++|++..++..++.+ ...|        ++.++.  ..+.+.+.  ..|...... 
T Consensus        76 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g--------~~~~A~--~~~~~~~~~~~~~~~~~~~~  145 (252)
T 2ho1_A           76 ALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQK--------RYEEAY--QRLLEASQDTLYPERSRVFE  145 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHTTCTTCTTHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHh--------HHHHHH--HHHHHHHhCccCcccHHHHH
Confidence            578999999999999999999999999999999999999 8888        666776  66666666  455433211 


Q ss_pred             -------CChHHHHH---H-HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHH
Q psy3020          78 -------SDPSYVQM---I-KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF  146 (150)
Q Consensus        78 -------~~~~~~~~---~-~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~  146 (150)
                             ....+...   + ..+...|..      +..+..+|.++...|++++|+..|+++++.+|+++..+..++.++
T Consensus       146 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  219 (252)
T 2ho1_A          146 NLGLVSLQMKKPAQAKEYFEKSLRLNRNQ------PSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLA  219 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence                   00011111   1 112234433      788999999999999999999999999999999999999999988


Q ss_pred             Hhc
Q psy3020         147 AKA  149 (150)
Q Consensus       147 ~~~  149 (150)
                      ..+
T Consensus       220 ~~~  222 (252)
T 2ho1_A          220 KVF  222 (252)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            754

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.44  E-value=8.9e-13  Score=100.01  Aligned_cols=131  Identities=12%  Similarity=0.060  Sum_probs=88.2

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCC-
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD-   79 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~-   79 (150)
                      .+|.++...|++++|+..|+++++++|+ +.++..++.+ ...|        ++.+++  ..+.+.+..+|+....+.. 
T Consensus       248 ~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~--------~~~~A~--~~~~~~~~~~~~~~~~~~~l  316 (537)
T 3fp2_A          248 YTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKE--------NSQEFF--KFFQKAVDLNPEYPPTYYHR  316 (537)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSS--------CCHHHH--HHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhc--------CHHHHH--HHHHHHhccCCCCHHHHHHH
Confidence            3577777788888888888888888887 7777777777 7777        556666  6666677777765442100 


Q ss_pred             -------hHHHHHH----HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          80 -------PSYVQMI----KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        80 -------~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                             ..+...+    ..+...|..      +..+..+|.++...|++++|++.|+++++++|+++.+++++|.++..
T Consensus       317 ~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  390 (537)
T 3fp2_A          317 GQMYFILQDYKNAKEDFQKAQSLNPEN------VYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTD  390 (537)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTC------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence                   0111111    112233333      66777888888888888888888888888888888888888887765


Q ss_pred             c
Q psy3020         149 A  149 (150)
Q Consensus       149 ~  149 (150)
                      +
T Consensus       391 ~  391 (537)
T 3fp2_A          391 R  391 (537)
T ss_dssp             T
T ss_pred             h
Confidence            4

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.44  E-value=4.5e-13  Score=95.63  Aligned_cols=116  Identities=14%  Similarity=0.210  Sum_probs=82.5

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCc------HHHHHHHHHH-Hhh-hhccCCCCCchhhhhCChHHHHhhccCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNN------EQMKEAIKDV-RNQ-EMNDMNRGDPFANLFSDPNIFVQLQLDPRT   73 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~------~~a~~~l~~~-~~~-g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~   73 (150)
                      .+|.+|..+|++++|+.+|++|+++.|..      ..++..+|.+ ... |        ++.+|+  ..+.+++.+.|+.
T Consensus        82 ~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg--------~~~~A~--~~~~~Al~~~~~~  151 (292)
T 1qqe_A           82 EAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLH--------DYAKAI--DCYELAGEWYAQD  151 (292)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------CHHHHH--HHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc--------CHHHHH--HHHHHHHHHHHhC
Confidence            46777777777777777777777776643      3456666766 553 6        555666  5665555554432


Q ss_pred             CCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcc-------hhhcHHHHH
Q psy3020          74 KPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHI-------LFSNRSAAF  146 (150)
Q Consensus        74 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~n~a~~~  146 (150)
                      ..                 +     ......+..+|.++...|+|++|+.+|++++++.|++..       .++++|.|+
T Consensus       152 ~~-----------------~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~  209 (292)
T 1qqe_A          152 QS-----------------V-----ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQ  209 (292)
T ss_dssp             TC-----------------H-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHH
T ss_pred             CC-----------------h-----HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHH
Confidence            11                 0     011567899999999999999999999999999998865       468899998


Q ss_pred             Hhc
Q psy3020         147 AKA  149 (150)
Q Consensus       147 ~~~  149 (150)
                      ..+
T Consensus       210 ~~~  212 (292)
T 1qqe_A          210 LAA  212 (292)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            764

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.43  E-value=1.1e-12  Score=97.52  Aligned_cols=131  Identities=21%  Similarity=0.265  Sum_probs=95.8

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHH------------HHH-HhhhhccCCCCCchhhhhCChHHHHhhc
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAI------------KDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQ   68 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l------------~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~   68 (150)
                      .+|.+|...|++++|+..|+++++++|++..++..+            +.+ ...|        .+.+|+  ..+.+.+.
T Consensus       216 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------~~~~A~--~~~~~~l~  285 (450)
T 2y4t_A          216 KISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDG--------RYTDAT--SKYESVMK  285 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHT--------CHHHHH--HHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHh
Confidence            467888888888888888888888888888877655            666 6666        566777  77777788


Q ss_pred             cCCCCCCC------------CCChHHHHHH---HH-HhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q psy3020          69 LDPRTKPF------------LSDPSYVQMI---KE-IQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLD  132 (150)
Q Consensus        69 ~~~~~~~~------------~~~~~~~~~~---~~-l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~  132 (150)
                      ..|++...            .....+...+   .. +...|..      +.+|..+|.++...|++++|++.|+++++++
T Consensus       286 ~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  359 (450)
T 2y4t_A          286 TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDN------VNALKDRAEAYLIEEMYDEAIQDYETAQEHN  359 (450)
T ss_dssp             HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred             cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            88875321            0011111111   11 3334444      7889999999999999999999999999999


Q ss_pred             CCCcchhhcHHHHHHh
Q psy3020         133 GTNHILFSNRSAAFAK  148 (150)
Q Consensus       133 p~~~~~~~n~a~~~~~  148 (150)
                      |+++..+..++.+...
T Consensus       360 p~~~~~~~~l~~~~~~  375 (450)
T 2y4t_A          360 ENDQQIREGLEKAQRL  375 (450)
T ss_dssp             SSCHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHH
Confidence            9999999988877654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.43  E-value=1.5e-12  Score=89.56  Aligned_cols=103  Identities=12%  Similarity=0.085  Sum_probs=85.3

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcH---HHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNE---QMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~---~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~   77 (150)
                      .+|..++..|+|++|+..|+++++..|+++   .++..+|.+ ..+|        ++.+|+  ..+.+.+...|++... 
T Consensus         9 ~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~--------~~~~A~--~~~~~~l~~~P~~~~~-   77 (225)
T 2yhc_A            9 ATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA--------DLPLAQ--AAIDRFIRLNPTHPNI-   77 (225)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTCTTH-
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC--------CHHHHH--HHHHHHHHHCcCCCcH-
Confidence            478999999999999999999999999864   789999999 9999        778888  8888888888976441 


Q ss_pred             CChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHH------------------HhcCHHHHHHHHHHHHhhcCCCcchh
Q psy3020          78 SDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAAL------------------QANNFKEAIEAYSEAIKLDGTNHILF  139 (150)
Q Consensus        78 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~------------------~~~~~~~A~~~~~~al~~~p~~~~~~  139 (150)
                                              +.++..+|.+++                  ..|++++|+..|+++++.+|+++.++
T Consensus        78 ------------------------~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~  133 (225)
T 2yhc_A           78 ------------------------DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTT  133 (225)
T ss_dssp             ------------------------HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHH
T ss_pred             ------------------------HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence                                    234444454444                  47899999999999999999998765

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.43  E-value=2.5e-13  Score=108.16  Aligned_cols=118  Identities=11%  Similarity=0.204  Sum_probs=99.5

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCC-
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD-   79 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~-   79 (150)
                      ++|.+|..+|++++|+.+|++||+++|++++++..+|.+ ..+|        ++.+|+  ..+.+++.++|++...+.. 
T Consensus        48 nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g--------~~~~A~--~~~~kAl~l~P~~~~a~~~L  117 (723)
T 4gyw_A           48 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ--------DVQGAL--QCYTRAIQINPAFADAHSNL  117 (723)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHhCCCCHHHHHHH
Confidence            689999999999999999999999999999999999999 9999        778888  8999999999998764211 


Q ss_pred             -------hHHHHHH----HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCC
Q psy3020          80 -------PSYVQMI----KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTN  135 (150)
Q Consensus        80 -------~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~  135 (150)
                             +.+.+++    +.++.+|..      +.++.++|.++...|++++|++.|++++++.|+.
T Consensus       118 g~~~~~~g~~~eAi~~~~~Al~l~P~~------~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~  178 (723)
T 4gyw_A          118 ASIHKDSGNIPEAIASYRTALKLKPDF------PDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ  178 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence                   1122222    224556666      8999999999999999999999999999998864

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.42  E-value=2.8e-13  Score=94.45  Aligned_cols=108  Identities=20%  Similarity=0.116  Sum_probs=93.7

Q ss_pred             hHHHHhhCCHHHHHHHHHHhhcc----CCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCC
Q psy3020           4 YSCLSYLGRYKESISTYEEGLKL----DPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS   78 (150)
Q Consensus         4 g~~~~~~~~~~~A~~~~~~aL~~----~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~   78 (150)
                      +..+...|++++|+..|+++++.    +|+++.++..+|.+ ...|        ++.+|+  ..+.+++..+|++     
T Consensus        12 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~--~~~~~al~~~~~~-----   76 (275)
T 1xnf_A           12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLG--------LRALAR--NDFSQALAIRPDM-----   76 (275)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCCCC-----
T ss_pred             eeccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcc--------cHHHHH--HHHHHHHHcCCCc-----
Confidence            33455678999999999999998    45678899999999 8999        667777  7777777777753     


Q ss_pred             ChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          79 DPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        79 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                                             +..|..+|.++...|++++|+++|.++++++|+++.+++++|.+|..+
T Consensus        77 -----------------------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~  124 (275)
T 1xnf_A           77 -----------------------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYG  124 (275)
T ss_dssp             -----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred             -----------------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHh
Confidence                                   678999999999999999999999999999999999999999999875

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.41  E-value=1e-12  Score=101.46  Aligned_cols=102  Identities=11%  Similarity=-0.008  Sum_probs=75.8

Q ss_pred             hCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHH
Q psy3020          10 LGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKE   88 (150)
Q Consensus        10 ~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   88 (150)
                      .|++++|+..|+++++++|++..++..+|.+ ...|        ++.+|+  ..+.+++..+|++               
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--------~~~~A~--~~~~~al~~~p~~---------------   56 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMG--------DTTAGE--MAVQRGLALHPGH---------------   56 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHT--------CHHHHH--HHHHHHHTTSTTC---------------
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHhCCCC---------------
Confidence            4789999999999999999999999999999 8889        777888  7888888888754               


Q ss_pred             HhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          89 IQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        89 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                                   +.++..+|.++...|++++|+++|+++++++|+++.+++++|.+|..+
T Consensus        57 -------------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  104 (568)
T 2vsy_A           57 -------------PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDA  104 (568)
T ss_dssp             -------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             -------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence                         678999999999999999999999999999999999999999999875

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.41  E-value=1.3e-12  Score=97.96  Aligned_cols=60  Identities=5%  Similarity=-0.097  Sum_probs=49.6

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhcc---------CCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKL---------DPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDP   71 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~---------~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~   71 (150)
                      .+|.++...|++++|++.|++|+++         +|+....+..+|.+ ..+|        ++.+|.  ..+.+++.+.+
T Consensus        56 ~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g--------~~~~A~--~~~~ka~~i~~  125 (472)
T 4g1t_A           56 LLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMG--------RLSDVQ--IYVDKVKHVCE  125 (472)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcC--------ChHHHH--HHHHHHHHHhH
Confidence            4799999999999999999999987         78888899999999 9999        666666  55555554443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.40  E-value=7.2e-12  Score=84.57  Aligned_cols=132  Identities=8%  Similarity=0.048  Sum_probs=100.0

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hhh-hhccCCCCCchhhhhCChHHHHhhc--cCCCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQ-EMNDMNRGDPFANLFSDPNIFVQLQ--LDPRTKPFL   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~-g~~~~~~~~~~~~a~~~~~~~~~l~--~~~~~~~~~   77 (150)
                      .+|.++...|++++|++.|+++++++|++..++..++.+ ... |        ++.+++  ..+.+.+.  ..|......
T Consensus        47 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~--------~~~~A~--~~~~~~~~~~~~~~~~~~~  116 (225)
T 2vq2_A           47 VRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLN--------RPAESM--AYFDKALADPTYPTPYIAN  116 (225)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--------CHHHHH--HHHHHHHTSTTCSCHHHHH
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC--------cHHHHH--HHHHHHHcCcCCcchHHHH
Confidence            478999999999999999999999999999999999999 888 8        666777  66666666  333322210


Q ss_pred             --------CChHHHHH---H-HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC-CCcchhhcHHH
Q psy3020          78 --------SDPSYVQM---I-KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDG-TNHILFSNRSA  144 (150)
Q Consensus        78 --------~~~~~~~~---~-~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~n~a~  144 (150)
                              ....+...   + ..+...|..      +..+..+|.++...|++++|++.|+++++.+| +++..+..++.
T Consensus       117 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  190 (225)
T 2vq2_A          117 LNKGICSAKQGQFGLAEAYLKRSLAAQPQF------PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWK  190 (225)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence                    00011111   1 113334433      78899999999999999999999999999999 99988887777


Q ss_pred             HHHhc
Q psy3020         145 AFAKA  149 (150)
Q Consensus       145 ~~~~~  149 (150)
                      ++...
T Consensus       191 ~~~~~  195 (225)
T 2vq2_A          191 IAKAL  195 (225)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            76543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.39  E-value=5.1e-12  Score=97.16  Aligned_cols=132  Identities=11%  Similarity=-0.014  Sum_probs=94.6

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC---
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL---   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~---   77 (150)
                      .++.++...|++++|+..|+++++.+|+++.++..++.+ ...|        ++.+|.  ..+.+.+..+|++....   
T Consensus       344 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~--~~~~~~~~~~~~~~~~~~~l  413 (597)
T 2xpi_A          344 LHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN--------KISEAR--RYFSKSSTMDPQFGPAWIGF  413 (597)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhc--------cHHHHH--HHHHHHHHhCCCCHHHHHHH
Confidence            467788888888888888888888888888888888887 7777        556666  66666666777654321   


Q ss_pred             -------CCh-HHHHHHHH-HhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          78 -------SDP-SYVQMIKE-IQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        78 -------~~~-~~~~~~~~-l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                             .+. .....+.. +...|..      ...|..+|.++.+.|++++|++.|+++++++|+++..|.++|.+|.+
T Consensus       414 ~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  487 (597)
T 2xpi_A          414 AHSFAIEGEHDQAISAYTTAARLFQGT------HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFN  487 (597)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHTTTTC------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence                   000 01111111 2233333      77888899999999999999999999999999999999999888876


Q ss_pred             c
Q psy3020         149 A  149 (150)
Q Consensus       149 ~  149 (150)
                      .
T Consensus       488 ~  488 (597)
T 2xpi_A          488 K  488 (597)
T ss_dssp             T
T ss_pred             h
Confidence            4

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.39  E-value=1.1e-11  Score=93.31  Aligned_cols=137  Identities=18%  Similarity=0.133  Sum_probs=98.1

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC---
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL---   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~---   77 (150)
                      .+|.++...|++++|+..|+++++++|+++.++..+|.+ ..+|        .+.+|+  ..+.+.+...|......   
T Consensus        44 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g--------~~~~A~--~~~~~~~~~~~~~~~~~~~~  113 (514)
T 2gw1_A           44 NLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLG--------KFADAM--FDLSVLSLNGDFNDASIEPM  113 (514)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHSSSCCGGGTHHH
T ss_pred             hHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHh--------hHHHHH--HHHHHHHhcCCCccchHHHH
Confidence            478999999999999999999999999999999999999 8888        556666  66666665555321110   


Q ss_pred             --------------------------------------------------------------------------------
Q psy3020          78 --------------------------------------------------------------------------------   77 (150)
Q Consensus        78 --------------------------------------------------------------------------------   77 (150)
                                                                                                      
T Consensus       114 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (514)
T 2gw1_A          114 LERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNG  193 (514)
T ss_dssp             HHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHH
Confidence                                                                                            


Q ss_pred             -------CChHHHHHHHHHh-----------cCcchhhh-HHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcch
Q psy3020          78 -------SDPSYVQMIKEIQ-----------KDPSLMTL-EAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHIL  138 (150)
Q Consensus        78 -------~~~~~~~~~~~l~-----------~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~  138 (150)
                             ....+...+..+.           ..|..... +..+..+..+|.++...|++++|+..|+++++.+|+ +.+
T Consensus       194 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~  272 (514)
T 2gw1_A          194 LSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNS  272 (514)
T ss_dssp             HHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHH
T ss_pred             HHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHH
Confidence                   0111222211111           12221110 233788889999999999999999999999999999 999


Q ss_pred             hhcHHHHHHhc
Q psy3020         139 FSNRSAAFAKA  149 (150)
Q Consensus       139 ~~n~a~~~~~~  149 (150)
                      ++++|.+|..+
T Consensus       273 ~~~l~~~~~~~  283 (514)
T 2gw1_A          273 YIYMALIMADR  283 (514)
T ss_dssp             HHHHHHHHHTS
T ss_pred             HHHHHHHHHHC
Confidence            99999988764

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.38  E-value=5.6e-12  Score=95.63  Aligned_cols=103  Identities=12%  Similarity=0.133  Sum_probs=77.6

Q ss_pred             cHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC----------CCC-hHHHHHH-HHHhcCcchh
Q psy3020          30 NEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF----------LSD-PSYVQMI-KEIQKDPSLM   96 (150)
Q Consensus        30 ~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~----------~~~-~~~~~~~-~~l~~~~~~~   96 (150)
                      ...++..++.+ ...|        ++.+++  ..+.+.+..+|+ ...          ..+ ......+ ..+...|.. 
T Consensus       242 ~~~~~~~~g~~~~~~~--------~~~~A~--~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-  309 (537)
T 3fp2_A          242 AALALCYTGIFHFLKN--------NLLDAQ--VLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY-  309 (537)
T ss_dssp             HHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC-
T ss_pred             HHHHHHHHHHHHHhcc--------cHHHHH--HHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC-
Confidence            35567788888 7888        667777  788888888887 321          111 1111222 123445544 


Q ss_pred             hhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          97 TLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        97 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                           +..+..+|.++...|++++|++.|+++++++|+++.+++++|.++..+
T Consensus       310 -----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~  357 (537)
T 3fp2_A          310 -----PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ  357 (537)
T ss_dssp             -----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHT
T ss_pred             -----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence                 889999999999999999999999999999999999999999999865

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.36  E-value=1.4e-11  Score=92.74  Aligned_cols=130  Identities=12%  Similarity=0.039  Sum_probs=75.0

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC---
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL---   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~---   77 (150)
                      .+|.++...|++++|+..|+++++.+|+ +.++..++.+ ...|        .+.+++  ..+.+.+..+|++...+   
T Consensus       242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~--------~~~~A~--~~~~~~~~~~~~~~~~~~~l  310 (514)
T 2gw1_A          242 HTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRN--------DSTEYY--NYFDKALKLDSNNSSVYYHR  310 (514)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSS--------CCTTGG--GHHHHHHTTCTTCTHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCC--------CHHHHH--HHHHHHhhcCcCCHHHHHHH
Confidence            3677777888888888888888888888 7777777777 7777        444555  55556666666554321   


Q ss_pred             -------CC-hHHHHHH-HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          78 -------SD-PSYVQMI-KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        78 -------~~-~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                             .+ ......+ ..+...|..      +..+..+|.++...|++++|+..|+++++.+|+++.+++++|.++..
T Consensus       311 ~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  384 (514)
T 2gw1_A          311 GQMNFILQNYDQAGKDFDKAKELDPEN------IFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTD  384 (514)
T ss_dssp             HHHHHHTTCTTHHHHHHHHHHHTCSSC------SHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhChhh------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence                   00 0011111 112223332      44555555555555666666666666666666555555555555544

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.35  E-value=6.6e-12  Score=96.56  Aligned_cols=109  Identities=10%  Similarity=0.055  Sum_probs=88.8

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhcc------CCCc-HHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKL------DPNN-EQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRT   73 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~------~p~~-~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~   73 (150)
                      .+|.+|...|++++|++.|++++++      +|++ ..++..++.+ ...|        ++.+|.  ..+.+.+..+|++
T Consensus       480 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g--------~~~~A~--~~~~~~~~~~p~~  549 (597)
T 2xpi_A          480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLK--------MYDAAI--DALNQGLLLSTND  549 (597)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHSSCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhc--------CHHHHH--HHHHHHHHhCCCC
Confidence            4677888888888888888888887      6665 7788888888 7777        556666  5555555555532


Q ss_pred             CCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          74 KPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        74 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                                                  +..|..+|.++...|++++|++.|+++++++|+++..+.+++.+|..
T Consensus       550 ----------------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  596 (597)
T 2xpi_A          550 ----------------------------ANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE  596 (597)
T ss_dssp             ----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred             ----------------------------hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence                                        77899999999999999999999999999999999999999988753

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.35  E-value=1.7e-11  Score=87.93  Aligned_cols=131  Identities=8%  Similarity=-0.028  Sum_probs=79.9

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHH-HHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC--
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQ-MKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL--   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~-a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~--   77 (150)
                      .+|..+...|++++|...|+++|+++|+++. +|..++.+ ...|        .+.+|.  ..+.+++...|......  
T Consensus       104 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~--------~~~~A~--~~~~~a~~~~p~~~~~~~~  173 (308)
T 2ond_A          104 AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE--------GIKSGR--MIFKKAREDARTRHHVYVT  173 (308)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHH--------CHHHHH--HHHHHHHTSTTCCTHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhc--------CHHHHH--HHHHHHHhcCCCCHHHHHH
Confidence            3566777777777777778887777777775 77777777 6666        555566  66666666666543210  


Q ss_pred             ---------CChH-HHHHH-HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhh---cCC-CcchhhcH
Q psy3020          78 ---------SDPS-YVQMI-KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKL---DGT-NHILFSNR  142 (150)
Q Consensus        78 ---------~~~~-~~~~~-~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~-~~~~~~n~  142 (150)
                               .+.. ....+ ..+...|..      +..|..+|..+...|++++|...|+++++.   +|+ +..+|...
T Consensus       174 ~a~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~  247 (308)
T 2ond_A          174 AALMEYYCSKDKSVAFKIFELGLKKYGDI------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF  247 (308)
T ss_dssp             HHHHHHHTSCCHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence                     0000 00000 112222322      677777777777778888888888888774   443 55666666


Q ss_pred             HHHHHh
Q psy3020         143 SAAFAK  148 (150)
Q Consensus       143 a~~~~~  148 (150)
                      +..+.+
T Consensus       248 ~~~~~~  253 (308)
T 2ond_A          248 LAFESN  253 (308)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.35  E-value=2.2e-11  Score=75.51  Aligned_cols=96  Identities=27%  Similarity=0.425  Sum_probs=82.5

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.++...|++++|+..|+++++.+|+++.++..++.+ ...|        ++.+++  ..+...+...|..       
T Consensus        40 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~--~~~~~~~~~~~~~-------  102 (136)
T 2fo7_A           40 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG--------DYDEAI--EYYQKALELDPRS-------  102 (136)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT--------CHHHHH--HHHHHHHHHCTTC-------
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc--------CHHHHH--HHHHHHHHhCCCC-------
Confidence            478899999999999999999999999999999999999 8888        566666  5555555555532       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCC
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTN  135 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~  135 (150)
                                           ...+..+|.++...|++++|+..|.+++.++|++
T Consensus       103 ---------------------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          103 ---------------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             ---------------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             ---------------------hHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence                                 5678889999999999999999999999999964

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.32  E-value=4.5e-12  Score=88.20  Aligned_cols=116  Identities=13%  Similarity=0.161  Sum_probs=93.4

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhcc--------CCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKL--------DPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPR   72 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~--------~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~   72 (150)
                      .+|.++...|++++|+..|++++++        +|....++..+|.+ ...|        ++.+|+  ..+.+++...  
T Consensus        48 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~--~~~~~al~~~--  115 (283)
T 3edt_B           48 ILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG--------KYKEAE--PLCKRALEIR--  115 (283)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT--------CHHHHH--HHHHHHHHHH--
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc--------cHHHHH--HHHHHHHHHH--
Confidence            5899999999999999999999988        57778889999999 8888        566666  5554444321  


Q ss_pred             CCCCCCChHHHHHHHHH--hcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--------cCCCcchhhcH
Q psy3020          73 TKPFLSDPSYVQMIKEI--QKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKL--------DGTNHILFSNR  142 (150)
Q Consensus        73 ~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~n~  142 (150)
                                    ...  ...|.      ...++..+|.+++..|++++|+++|++++++        +|....++.++
T Consensus       116 --------------~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  175 (283)
T 3edt_B          116 --------------EKVLGKFHPD------VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNL  175 (283)
T ss_dssp             --------------HHHHCTTCHH------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred             --------------HHHcCCCChH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence                          111  01122      2788999999999999999999999999999        88888999999


Q ss_pred             HHHHHhc
Q psy3020         143 SAAFAKA  149 (150)
Q Consensus       143 a~~~~~~  149 (150)
                      |.+|..+
T Consensus       176 a~~~~~~  182 (283)
T 3edt_B          176 ASCYLKQ  182 (283)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            9999865

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.31  E-value=1.6e-11  Score=74.55  Aligned_cols=94  Identities=12%  Similarity=0.076  Sum_probs=72.2

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.++...|++++|+..|+++++++|+++.++..+|.+ ..+|        ++.+|+  ..+.+++.++|++....   
T Consensus         9 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--------~~~~A~--~~~~~al~~~p~~~~~~---   75 (111)
T 2l6j_A            9 EQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLG--------EYTQAI--QMCQQGLRYTSTAEHVA---   75 (111)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHTSCSSTTSHH---
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhc--------CHHHHH--HHHHHHHHhCCCccHHH---
Confidence            478899999999999999999999999999998888888 8888        667777  77777888887652210   


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHH
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSE  127 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~  127 (150)
                                         .....+..+|.++...|++++|++.+.+
T Consensus        76 -------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           76 -------------------IRSKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             -------------------HHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             -------------------HHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence                               0155677788888888877777665543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.30  E-value=1.9e-11  Score=76.26  Aligned_cols=84  Identities=13%  Similarity=0.097  Sum_probs=74.4

Q ss_pred             CCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHH
Q psy3020          28 PNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLK  106 (150)
Q Consensus        28 p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  106 (150)
                      |..++.+..+|.. ...|        ++.+|+  ..+.+++..+|++                            +..|.
T Consensus         1 p~~a~~~~~~g~~~~~~~--------~~~~A~--~~~~~al~~~p~~----------------------------~~~~~   42 (126)
T 3upv_A            1 SMKAEEARLEGKEYFTKS--------DWPNAV--KAYTEMIKRAPED----------------------------ARGYS   42 (126)
T ss_dssp             CHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC----------------------------HHHHH
T ss_pred             CchHHHHHHHHHHHHHhc--------CHHHHH--HHHHHHHHhCCCC----------------------------hHHHH
Confidence            5567888899998 8888        777888  7787778777754                            67899


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         107 DKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       107 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      .+|.+++..|++++|+.+|+++++++|+++.+|+++|.++..+
T Consensus        43 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~   85 (126)
T 3upv_A           43 NRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV   85 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999875

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.29  E-value=1.4e-12  Score=95.04  Aligned_cols=118  Identities=14%  Similarity=0.157  Sum_probs=99.3

Q ss_pred             hhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHH
Q psy3020           9 YLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIK   87 (150)
Q Consensus         9 ~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~   87 (150)
                      .++++++|++.|+++++.+|+++.++..+|.+ ...|        ++.+|+  ..+.+++.++|+......  .....  
T Consensus       125 ~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g--------~~~~A~--~~y~~Al~~~p~~~~~~~--~~~~~--  190 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEG--------KYKQAL--LQYKKIVSWLEYESSFSN--EEAQK--  190 (336)
T ss_dssp             EEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHT--------CHHHHH--HHHHHHHHHTTTCCCCCS--HHHHH--
T ss_pred             EEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCC--------CHHHHH--HHHHHHHHHhhccccCCh--HHHHH--
Confidence            56778889999999999999999999999999 9999        778888  899999999998764321  10000  


Q ss_pred             HHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          88 EIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        88 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                         ..+      ....+|.++|.++.+.|+|++|+.+|+++++++|+++.+|+++|.+|..+
T Consensus       191 ---~~~------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  243 (336)
T 1p5q_A          191 ---AQA------LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAV  243 (336)
T ss_dssp             ---HHH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             ---HHH------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence               011      22789999999999999999999999999999999999999999999875

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.29  E-value=2.6e-11  Score=86.73  Aligned_cols=128  Identities=9%  Similarity=0.046  Sum_probs=87.1

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhcc--CCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC-
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKL--DPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL-   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~--~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~-   77 (150)
                      .++..+...+++++|++.+++++..  +|+++.++..+|.+ ...|        ++.+|+  ..+.+     |++...+ 
T Consensus        70 ~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g--------~~~~Al--~~l~~-----~~~~~~~~  134 (291)
T 3mkr_A           70 MFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ--------NPDAAL--RTLHQ-----GDSLECMA  134 (291)
T ss_dssp             HHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT--------CHHHHH--HHHTT-----CCSHHHHH
T ss_pred             HHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC--------CHHHHH--HHHhC-----CCCHHHHH
Confidence            4678899999999999999999875  69999999999999 8889        556666  33332     4333211 


Q ss_pred             ---------CCh-HHHHHHHH-HhcCcchhhhHHHhHHHHHHH--HHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHH
Q psy3020          78 ---------SDP-SYVQMIKE-IQKDPSLMTLEAKISLLKDKG--NAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSA  144 (150)
Q Consensus        78 ---------~~~-~~~~~~~~-l~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~  144 (150)
                               .+. .....++. +..+|..      .......+  ..+...|++++|+..|+++++.+|+++.+++++|.
T Consensus       135 ~l~~~~~~~g~~~~A~~~l~~~~~~~p~~------~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~  208 (291)
T 3mkr_A          135 MTVQILLKLDRLDLARKELKKMQDQDEDA------TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAA  208 (291)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcCc------HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence                     110 01111111 2223322      21111122  22334589999999999999999999999999999


Q ss_pred             HHHhcC
Q psy3020         145 AFAKAI  150 (150)
Q Consensus       145 ~~~~~~  150 (150)
                      ++.+++
T Consensus       209 ~~~~~g  214 (291)
T 3mkr_A          209 CHMAQG  214 (291)
T ss_dssp             HHHHTT
T ss_pred             HHHHcC
Confidence            998763

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.28  E-value=6.2e-11  Score=72.87  Aligned_cols=86  Identities=15%  Similarity=0.175  Sum_probs=75.7

Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcC
Q psy3020          14 KESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKD   92 (150)
Q Consensus        14 ~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~   92 (150)
                      ++|+..|+++++++|+++.++..+|.+ ...|        ++.+|+  ..+.+++..+|+.                   
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g--------~~~~A~--~~~~~al~~~p~~-------------------   52 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHE--------QFDAAL--PHLRAALDFDPTY-------------------   52 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC-------------------
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcc--------CHHHHH--HHHHHHHHHCCCc-------------------
Confidence            368999999999999999999999999 9999        677787  7777777777753                   


Q ss_pred             cchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcc
Q psy3020          93 PSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHI  137 (150)
Q Consensus        93 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~  137 (150)
                               +.+|..+|.++...|++++|+..|+++++++|++..
T Consensus        53 ---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~   88 (115)
T 2kat_A           53 ---------SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGD   88 (115)
T ss_dssp             ---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             ---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccc
Confidence                     678999999999999999999999999999996543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.27  E-value=7.7e-12  Score=89.22  Aligned_cols=115  Identities=8%  Similarity=0.037  Sum_probs=91.0

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCC------cHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCC
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPN------NEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKP   75 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~------~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~   75 (150)
                      .|.+|...|+|++|+++|++|+++.+.      .+.++..+|.+ ..+|        ++.+|+  ..+.+++.+.|+...
T Consensus        43 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g--------~~~~A~--~~~~~Al~l~~~~g~  112 (292)
T 1qqe_A           43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG--------NSVNAV--DSLENAIQIFTHRGQ  112 (292)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCC--------CHHHHH--HHHHHHHHHHHHcCC
Confidence            477899999999999999999998542      25688899999 8999        667777  667666665543211


Q ss_pred             CCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHh-cCHHHHHHHHHHHHhhcCCC------cchhhcHHHHHHh
Q psy3020          76 FLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQA-NNFKEAIEAYSEAIKLDGTN------HILFSNRSAAFAK  148 (150)
Q Consensus        76 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~A~~~~~~al~~~p~~------~~~~~n~a~~~~~  148 (150)
                            ..                ..+..+.++|.++... |++++|+++|++|+++.|++      ..++.++|.+|..
T Consensus       113 ------~~----------------~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~  170 (292)
T 1qqe_A          113 ------FR----------------RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKAL  170 (292)
T ss_dssp             ------HH----------------HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ------HH----------------HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence                  00                1167899999999996 99999999999999999975      4678899999887


Q ss_pred             c
Q psy3020         149 A  149 (150)
Q Consensus       149 ~  149 (150)
                      +
T Consensus       171 ~  171 (292)
T 1qqe_A          171 D  171 (292)
T ss_dssp             T
T ss_pred             h
Confidence            5

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.26  E-value=3.8e-11  Score=85.47  Aligned_cols=114  Identities=11%  Similarity=0.089  Sum_probs=86.1

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCc------HHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhc---cCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNN------EQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQ---LDP   71 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~------~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~---~~~   71 (150)
                      .+|.++...|++++|+..|++++++.+..      ..++..+|.+ ..+|        ++.+|+  ..+.+++.   ..|
T Consensus       120 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~--------~~~~A~--~~~~kal~~~~~~~  189 (293)
T 2qfc_A          120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG--------YLKKGI--DLFEQILKQLEALH  189 (293)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHHHHSC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHHHHhcC
Confidence            36778888899999999999999876544      5578888888 8888        566666  55544442   222


Q ss_pred             CCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCC------cchhhcHHHH
Q psy3020          72 RTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTN------HILFSNRSAA  145 (150)
Q Consensus        72 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~n~a~~  145 (150)
                      +...                        ....++.++|.++...|+|++|+++|++++++.++.      +.+|+++|.+
T Consensus       190 ~~~~------------------------~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~  245 (293)
T 2qfc_A          190 DNEE------------------------FDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGEC  245 (293)
T ss_dssp             CCHH------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHH
T ss_pred             cccc------------------------chHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            1100                        014689999999999999999999999999987642      6788999999


Q ss_pred             HHhc
Q psy3020         146 FAKA  149 (150)
Q Consensus       146 ~~~~  149 (150)
                      |..+
T Consensus       246 y~~~  249 (293)
T 2qfc_A          246 LRKL  249 (293)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            9875

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.26  E-value=1.3e-11  Score=90.64  Aligned_cols=116  Identities=9%  Similarity=0.028  Sum_probs=79.6

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCC-------CcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDP-------NNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRT   73 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p-------~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~   73 (150)
                      .+|.+|...|++++|+..|++|+++.+       ..+.++..+|.+ ..+|        ++.+|+  ..+.+++.+.+..
T Consensus       148 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g--------~~~~A~--~~~~~al~~~~~~  217 (383)
T 3ulq_A          148 KMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLK--------QYEDAI--SHFQKAYSMAEAE  217 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhc--------CHHHHH--HHHHHHHHHHHHc
Confidence            589999999999999999999999844       344578889999 8888        667777  6666666554432


Q ss_pred             CCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHh-----hc-CCCcchhhcHHHHHH
Q psy3020          74 KPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIK-----LD-GTNHILFSNRSAAFA  147 (150)
Q Consensus        74 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-----~~-p~~~~~~~n~a~~~~  147 (150)
                      ..                .+      ....++.++|.++...|++++|+++|+++++     .+ |..+.+++++|.+|.
T Consensus       218 ~~----------------~~------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~  275 (383)
T 3ulq_A          218 KQ----------------PQ------LMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHY  275 (383)
T ss_dssp             TC----------------HH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             CC----------------hH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence            21                00      1145566666666666666666666666666     34 555666666666665


Q ss_pred             hc
Q psy3020         148 KA  149 (150)
Q Consensus       148 ~~  149 (150)
                      .+
T Consensus       276 ~~  277 (383)
T 3ulq_A          276 KL  277 (383)
T ss_dssp             HT
T ss_pred             HC
Confidence            53

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.23  E-value=2.7e-11  Score=84.17  Aligned_cols=98  Identities=15%  Similarity=0.195  Sum_probs=77.7

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhcc--------CCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKL--------DPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPR   72 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~--------~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~   72 (150)
                      .+|.++...|++++|+..|++++++        +|....++..+|.+ ..+|        ++.+|+  ..+.+++...  
T Consensus        90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g--------~~~~A~--~~~~~al~~~--  157 (283)
T 3edt_B           90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQG--------KAEEVE--YYYRRALEIY--  157 (283)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT--------CHHHHH--HHHHHHHHHH--
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHHH--
Confidence            5899999999999999999999998        67888899999999 9999        556666  5554444321  


Q ss_pred             CCCCCCChHHHHHHHHH--hcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q psy3020          73 TKPFLSDPSYVQMIKEI--QKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKL  131 (150)
Q Consensus        73 ~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~  131 (150)
                                    ...  ...|      .....+..+|.++...|++++|+++|.+++++
T Consensus       158 --------------~~~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          158 --------------ATRLGPDDP------NVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             --------------HHHSCTTCH------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             --------------HHhcCCCCH------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                          000  0122      22788999999999999999999999999987

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.23  E-value=3.7e-11  Score=85.49  Aligned_cols=116  Identities=12%  Similarity=0.113  Sum_probs=77.2

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCc------HHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCC
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNN------EQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKP   75 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~------~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~   75 (150)
                      +|.++...+++++|+..|++||++.+..      ..++..+|.+ ..+|        ++.+|+  ..+.+++....    
T Consensus       121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g--------~~~~A~--~~~~~al~~~~----  186 (293)
T 3u3w_A          121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENG--------YLKKGI--DLFEQILKQLE----  186 (293)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHHH----
T ss_pred             HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHHHH----
Confidence            5666666667777777777777654332      2246666666 6666        444554  33333332111    


Q ss_pred             CCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCC------cchhhcHHHHHHhc
Q psy3020          76 FLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTN------HILFSNRSAAFAKA  149 (150)
Q Consensus        76 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~n~a~~~~~~  149 (150)
                                  .....     .+.....+.++|.++...|+|++|++++++++++.+..      +.+|+++|.+|..+
T Consensus       187 ------------~~~~~-----~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~  249 (293)
T 3u3w_A          187 ------------ALHDN-----EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKL  249 (293)
T ss_dssp             ------------HSSCC-----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHT
T ss_pred             ------------hcccc-----hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHh
Confidence                        01000     00226789999999999999999999999999998765      67899999999875

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.22  E-value=8.1e-11  Score=76.78  Aligned_cols=87  Identities=11%  Similarity=0.061  Sum_probs=77.0

Q ss_pred             ccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhH
Q psy3020          25 KLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKIS  103 (150)
Q Consensus        25 ~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  103 (150)
                      ..+|.++.++..+|.+ ...|        ++.+|+  ..+.+++.++|++                            +.
T Consensus         5 ~~~~~~a~~~~~~g~~~~~~g--------~~~~A~--~~~~~al~~~p~~----------------------------~~   46 (164)
T 3sz7_A            5 MAPTPESDKLKSEGNAAMARK--------EYSKAI--DLYTQALSIAPAN----------------------------PI   46 (164)
T ss_dssp             SSCCHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHSTTC----------------------------HH
T ss_pred             chhhhhHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHhCCcC----------------------------HH
Confidence            3466788899999999 8888        777888  7788888877753                            77


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         104 LLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       104 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      .|..+|.+++..|++++|+.+|+++++++|+++.+|+++|.+|..+
T Consensus        47 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~   92 (164)
T 3sz7_A           47 YLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDM   92 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            8999999999999999999999999999999999999999999875

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.22  E-value=3.6e-11  Score=85.46  Aligned_cols=126  Identities=9%  Similarity=0.070  Sum_probs=94.6

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      ++|.+|...|++++|+..|+++++++|+++.++..+|.+ ..+|        ++.+|+  ..+.+++.++|++...+...
T Consensus        43 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--------~~~~A~--~~~~~al~l~p~~~~~~~~~  112 (281)
T 2c2l_A           43 NRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME--------SYDEAI--ANLQRAYSLAKEQRLNFGDD  112 (281)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHHHHTTCCCCSH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHhCccchhhHHHH
Confidence            589999999999999999999999999999999999999 9999        778888  88888899999876544321


Q ss_pred             HHHHHHHH----------HhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHH
Q psy3020          81 SYVQMIKE----------IQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF  146 (150)
Q Consensus        81 ~~~~~~~~----------l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~  146 (150)
                       ....+..          ....+..      ......++...  .|++++|++.|+++++++|++......++..+
T Consensus       113 -~~~~~~~~~~~~~~~~~~~~~~~~------~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  179 (281)
T 2c2l_A          113 -IPSALRIAKKKRWNSIEERRIHQE------SELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIE  179 (281)
T ss_dssp             -HHHHHHHHHHHHHHHHHHTCCCCC------CHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHH
Confidence             1111100          1112212      44445555543  79999999999999999999877766655444

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.22  E-value=1.8e-11  Score=73.21  Aligned_cols=90  Identities=16%  Similarity=0.224  Sum_probs=76.1

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHH-HHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQ-MKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD   79 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~-a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~   79 (150)
                      ..|.++...|++++|+..|+++++++|+++. ++..+|.+ ..+|        ++.+|+  ..+.+++.++|++..    
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~--------~~~~A~--~~~~~al~~~p~~~~----   70 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLG--------DWQKAL--NNYQSAIELNPDSPA----   70 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHT--------CHHHHH--HHHHHHHHHCTTSTH----
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHhcCCCcHH----
Confidence            5789999999999999999999999999999 99999999 8888        677888  888888888886533    


Q ss_pred             hHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcc
Q psy3020          80 PSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHI  137 (150)
Q Consensus        80 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~  137 (150)
                                              ++..        +.+.+++..|++++..+|+++.
T Consensus        71 ------------------------~~~~--------~~~~~a~~~~~~~~~~~p~~~~   96 (99)
T 2kc7_A           71 ------------------------LQAR--------KMVMDILNFYNKDMYNQLEHHH   96 (99)
T ss_dssp             ------------------------HHHH--------HHHHHHHHHHCCTTHHHHCCSS
T ss_pred             ------------------------HHHH--------HHHHHHHHHHHHHhccCccccc
Confidence                                    2211        6778899999999999998764

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.22  E-value=1.5e-10  Score=72.82  Aligned_cols=87  Identities=9%  Similarity=0.046  Sum_probs=75.6

Q ss_pred             ccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhH
Q psy3020          25 KLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKIS  103 (150)
Q Consensus        25 ~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  103 (150)
                      ..+|.++..+..+|.+ ...|        ++.+|+  ..+.+++..+|++                            +.
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~--------~~~~A~--~~~~~al~~~~~~----------------------------~~   44 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGR--------KYPEAA--ACYGRAITRNPLV----------------------------AV   44 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC----------------------------HH
T ss_pred             CCccccHHHHHHHHHHHHHhC--------cHHHHH--HHHHHHHhhCcCc----------------------------HH
Confidence            4678899999999999 8989        777887  7777777777753                            67


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         104 LLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       104 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      .|..+|.+++..|++++|+.+|+++++++|+++.+++++|.+|..+
T Consensus        45 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~   90 (137)
T 3q49_B           45 YYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM   90 (137)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999875

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.22  E-value=1.2e-10  Score=68.06  Aligned_cols=86  Identities=27%  Similarity=0.348  Sum_probs=72.0

Q ss_pred             cCC-CcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhH
Q psy3020          26 LDP-NNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKIS  103 (150)
Q Consensus        26 ~~p-~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  103 (150)
                      ++| +++.++..++.+ ...|        ++.+|+  ..+.+++..+|++                            +.
T Consensus         3 ~~~~~~~~~~~~la~~~~~~~--------~~~~A~--~~~~~a~~~~~~~----------------------------~~   44 (91)
T 1na3_A            3 MDPGNSAEAWYNLGNAYYKQG--------DYDEAI--EYYQKALELDPNN----------------------------AE   44 (91)
T ss_dssp             ---CHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC----------------------------HH
T ss_pred             CcccccHHHHHHHHHHHHHcc--------CHHHHH--HHHHHHHhcCCCC----------------------------HH
Confidence            355 467889999999 8888        667777  7777777766643                            67


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         104 LLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       104 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      .+..+|.++...|++++|+++|+++++++|+++.++.++|.++..+
T Consensus        45 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~   90 (91)
T 1na3_A           45 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ   90 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence            8899999999999999999999999999999999999999999875

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.21  E-value=7.8e-11  Score=91.56  Aligned_cols=110  Identities=16%  Similarity=0.066  Sum_probs=95.6

Q ss_pred             hHHHHhhCC----------HHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCC
Q psy3020           4 YSCLSYLGR----------YKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPR   72 (150)
Q Consensus         4 g~~~~~~~~----------~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~   72 (150)
                      |.++..+++          ++++++.++++|+.+|.+..+|...+-+ ..++..      .+.+++  ..+.+.+..+|+
T Consensus        70 ~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~------~~~~el--~~~~k~l~~d~~  141 (567)
T 1dce_A           70 REVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP------NWAREL--ELCARFLEADER  141 (567)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC------CHHHHH--HHHHHHHHHCTT
T ss_pred             HHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc------cHHHHH--HHHHHHHhhccc
Confidence            567777888          9999999999999999999999999999 887732      335666  677777777775


Q ss_pred             CCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhc-CHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          73 TKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQAN-NFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        73 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      +                            ..+|..+|.+....| .+++++++++++++.+|.|..+|++|+.++..+
T Consensus       142 N----------------------------~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l  191 (567)
T 1dce_A          142 N----------------------------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  191 (567)
T ss_dssp             C----------------------------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             c----------------------------ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence            4                            789999999999999 999999999999999999999999999998763

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.21  E-value=6.8e-11  Score=86.83  Aligned_cols=116  Identities=6%  Similarity=-0.007  Sum_probs=93.0

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhcc---CC---CcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCC
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKL---DP---NNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKP   75 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~---~p---~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~   75 (150)
                      .|.++...|++++|+..|++|+++   .|   ..+.++..+|.+ ..+|        ++..|+  ..+.+++.+.+....
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~--------~~~~A~--~~~~~al~~~~~~~~  178 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK--------QTYFSM--DYARQAYEIYKEHEA  178 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHHHTCST
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHHHHhCcc
Confidence            789999999999999999999998   33   356788999999 8899        667777  666666655444321


Q ss_pred             CCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCc------chhhcHHHHHHhc
Q psy3020          76 FLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNH------ILFSNRSAAFAKA  149 (150)
Q Consensus        76 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~n~a~~~~~~  149 (150)
                      .               .+      ..+.++..+|.++...|++++|+++|.+++++.|...      .+++|+|.+|..+
T Consensus       179 ~---------------~~------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~  237 (383)
T 3ulq_A          179 Y---------------NI------RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQ  237 (383)
T ss_dssp             T---------------HH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             c---------------hH------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHC
Confidence            0               00      1277899999999999999999999999999987654      4899999999875

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.21  E-value=3.9e-12  Score=96.33  Aligned_cols=118  Identities=11%  Similarity=0.070  Sum_probs=98.6

Q ss_pred             hhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHH
Q psy3020           9 YLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIK   87 (150)
Q Consensus         9 ~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~   87 (150)
                      .++++++|++.|+++++.+|+++.++..+|.+ ...|        ++.+|+  ..+.+++.++|.+..+..  .....+ 
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g--------~~~~A~--~~y~~Al~~~p~~~~~~~--~~~~~~-  312 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGG--------KYMQAV--IQYGKIVSWLEMEYGLSE--KESKAS-  312 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHHTTCCSCCH--HHHHHH-
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCC--------CHHHHH--HHHHHHHHHhcccccCCh--HHHHHH-
Confidence            45677889999999999999999999999999 8899        778888  889999998888754321  111100 


Q ss_pred             HHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          88 EIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        88 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                          .+      ....+|.++|.++++.|+|++|+.+|+++++++|+++.+|+++|.+|..+
T Consensus       313 ----~~------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~  364 (457)
T 1kt0_A          313 ----ES------FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLM  364 (457)
T ss_dssp             ----HH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHT
T ss_pred             ----HH------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHc
Confidence                01      22789999999999999999999999999999999999999999999875

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.19  E-value=3.3e-10  Score=81.17  Aligned_cols=125  Identities=10%  Similarity=0.075  Sum_probs=92.8

Q ss_pred             hhCCH-------HHHHHHHHHhhc-cCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCC-CCC
Q psy3020           9 YLGRY-------KESISTYEEGLK-LDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKP-FLS   78 (150)
Q Consensus         9 ~~~~~-------~~A~~~~~~aL~-~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~-~~~   78 (150)
                      ..|++       ++|+..|++|++ ++|++..+|..++.+ ...|        .+.+|.  ..+.+++..+|++.. ...
T Consensus        69 ~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~--------~~~~A~--~~~~~al~~~p~~~~~~~~  138 (308)
T 2ond_A           69 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM--------KYEKVH--SIYNRLLAIEDIDPTLVYI  138 (308)
T ss_dssp             HTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHTSSSSCTHHHHH
T ss_pred             hccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC--------CHHHHH--HHHHHHHhccccCccHHHH
Confidence            45775       999999999999 799999999999999 8888        667777  888889999997653 211


Q ss_pred             C-hHHH-------H---HH-HHHhcCcchhhhHHHhHHHHHHHHHHHH-hcCHHHHHHHHHHHHhhcCCCcchhhcHHHH
Q psy3020          79 D-PSYV-------Q---MI-KEIQKDPSLMTLEAKISLLKDKGNAALQ-ANNFKEAIEAYSEAIKLDGTNHILFSNRSAA  145 (150)
Q Consensus        79 ~-~~~~-------~---~~-~~l~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~  145 (150)
                      . ..+.       .   .+ +.+...|..      ...|...+...+. .|++++|+++|+++++++|+++.+|.++|..
T Consensus       139 ~~~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  212 (308)
T 2ond_A          139 QYMKFARRAEGIKSGRMIFKKAREDARTR------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDY  212 (308)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHTSTTCC------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            0 0010       1   11 112223322      5566655555443 6999999999999999999999999999998


Q ss_pred             HHhc
Q psy3020         146 FAKA  149 (150)
Q Consensus       146 ~~~~  149 (150)
                      +..+
T Consensus       213 ~~~~  216 (308)
T 2ond_A          213 LSHL  216 (308)
T ss_dssp             HHTT
T ss_pred             HHHC
Confidence            8764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.19  E-value=5.1e-11  Score=75.03  Aligned_cols=83  Identities=17%  Similarity=0.328  Sum_probs=69.0

Q ss_pred             CCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHH
Q psy3020          28 PNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLK  106 (150)
Q Consensus        28 p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  106 (150)
                      ++.+.++..+|.+ ...|        ++.+|+  ..+.+++.++|++                            +.+|.
T Consensus         5 ~d~A~a~~~lG~~~~~~~--------~~~~A~--~~y~~Al~~~p~~----------------------------~~~~~   46 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQK--------DFEKAH--VHYDKAIELDPSN----------------------------ITFYN   46 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC----------------------------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHhCCCC----------------------------HHHHH
Confidence            3456678899999 8888        778888  8888888888864                            67899


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhhcCCCcc-------hhhcHHHHHHh
Q psy3020         107 DKGNAALQANNFKEAIEAYSEAIKLDGTNHI-------LFSNRSAAFAK  148 (150)
Q Consensus       107 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-------~~~n~a~~~~~  148 (150)
                      ++|.+++.+|+|++|++.|+++++++|++..       +|+++|.++..
T Consensus        47 nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~   95 (127)
T 4gcn_A           47 NKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQK   95 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999875       45556666554

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.19  E-value=4.3e-10  Score=78.76  Aligned_cols=127  Identities=9%  Similarity=-0.011  Sum_probs=89.3

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hh----hhhccCCCCCchhhhhCChHHHHhhccCCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RN----QEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF   76 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~----~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~   76 (150)
                      .+|.++...|++++|+..|+++++  |+++.++..+|.+ ..    .+        ++.+|+  ..+.+++...  +...
T Consensus        11 ~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~--------~~~~A~--~~~~~a~~~~--~~~a   76 (273)
T 1ouv_A           11 GLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEK--------NLKKAA--SFYAKACDLN--YSNG   76 (273)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCC--------CHHHHH--HHHHHHHHTT--CHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCC--------CHHHHH--HHHHHHHHCC--CHHH
Confidence            579999999999999999999998  8889999999998 66    55        566666  6666665543  1110


Q ss_pred             C--------C----ChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhcCCCcchhh
Q psy3020          77 L--------S----DPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQ----ANNFKEAIEAYSEAIKLDGTNHILFS  140 (150)
Q Consensus        77 ~--------~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~  140 (150)
                      .        .    ...+...+..+.+...    ...+.++..+|.++..    .+++++|+++|+++++.+  ++.+++
T Consensus        77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~  150 (273)
T 1ouv_A           77 CHLLGNLYYSGQGVSQNTNKALQYYSKACD----LKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCT  150 (273)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred             HHHHHHHHhCCCCcccCHHHHHHHHHHHHH----cCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHH
Confidence            0        0    0011111111110000    0117888999999999    999999999999999986  578889


Q ss_pred             cHHHHHHh
Q psy3020         141 NRSAAFAK  148 (150)
Q Consensus       141 n~a~~~~~  148 (150)
                      ++|.+|..
T Consensus       151 ~lg~~~~~  158 (273)
T 1ouv_A          151 ILGSLYDA  158 (273)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            99998875

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.17  E-value=2.2e-10  Score=84.26  Aligned_cols=116  Identities=10%  Similarity=0.115  Sum_probs=92.3

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcH----HHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNE----QMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF   76 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~----~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~   76 (150)
                      .+|.++...|++++|+..|+++++++|++.    .++..+|.+ ..+|        ++.+++  ..+.+++.+.      
T Consensus        53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g--------~~~~A~--~~~~~al~~~------  116 (411)
T 4a1s_A           53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLG--------DYNKAM--QYHKHDLTLA------  116 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHT--------CHHHHH--HHHHHHHHHH------
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCC--------CHHHHH--HHHHHHHHHH------
Confidence            478999999999999999999999999987    478889999 8888        556666  4444443321      


Q ss_pred             CCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhh------cCCCcchhhcHHHHHHhc
Q psy3020          77 LSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKL------DGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        77 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~n~a~~~~~~  149 (150)
                                ......+      .....+..+|.++...|++++|+++|.+++++      .|....++.++|.+|..+
T Consensus       117 ----------~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~  179 (411)
T 4a1s_A          117 ----------KSMNDRL------GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAK  179 (411)
T ss_dssp             ----------HHTTCHH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             ----------HHccCch------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHc
Confidence                      1111112      22788999999999999999999999999999      677788999999998764

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.17  E-value=7.2e-11  Score=71.20  Aligned_cols=86  Identities=16%  Similarity=0.205  Sum_probs=74.7

Q ss_pred             cCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHH
Q psy3020          26 LDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISL  104 (150)
Q Consensus        26 ~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  104 (150)
                      ++|+++.++..+|.+ ...|        ++.+|+  ..+.+++..+|+.                            ...
T Consensus         1 l~p~~~~~~~~~~~~~~~~~--------~~~~A~--~~~~~a~~~~~~~----------------------------~~~   42 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYDAG--------NYTESI--DLFEKAIQLDPEE----------------------------SKY   42 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHSSC--------CHHHHH--HHHHHHHHHCCCC----------------------------HHH
T ss_pred             CCCCcHHHHHHHHHHHHHhh--------hHHHHH--HHHHHHHHhCcCC----------------------------HHH
Confidence            479999999999999 8888        667777  6676677666643                            678


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhhcCC--CcchhhcHHHHHHhc
Q psy3020         105 LKDKGNAALQANNFKEAIEAYSEAIKLDGT--NHILFSNRSAAFAKA  149 (150)
Q Consensus       105 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~n~a~~~~~~  149 (150)
                      +..+|.+++..|++++|+++|+++++++|+  ++.+++++|.++..+
T Consensus        43 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~   89 (112)
T 2kck_A           43 WLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYI   89 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999  999999999999765

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.16  E-value=1.9e-11  Score=93.10  Aligned_cols=103  Identities=9%  Similarity=0.040  Sum_probs=84.1

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.+|..+|++++|++.|++|++++|+++.++..+|.+ ..+|        ++.+|+  ..+.+++.++|++       
T Consensus        45 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g--------~~~eA~--~~~~~al~~~p~~-------  107 (477)
T 1wao_1           45 NRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG--------KFRAAL--RDYETVVKVKPHD-------  107 (477)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT--------CHHHHH--HHHHHHHHHSTTC-------
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHhCCCC-------
Confidence            589999999999999999999999999999999999999 9999        778888  8888888888865       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHH--HHHhcCHHHHHHHHH-----------HHHhhcCCCcchhhcH
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNA--ALQANNFKEAIEAYS-----------EAIKLDGTNHILFSNR  142 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~A~~~~~-----------~al~~~p~~~~~~~n~  142 (150)
                                           ..++..++.+  +..+|++++|++.++           ++++++|+....++..
T Consensus       108 ---------------------~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~  161 (477)
T 1wao_1          108 ---------------------KDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLED  161 (477)
T ss_dssp             ---------------------TTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGG
T ss_pred             ---------------------HHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccccccccc
Confidence                                 3345566666  788899999999999           9999999877666554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.16  E-value=3.2e-10  Score=73.13  Aligned_cols=97  Identities=10%  Similarity=0.076  Sum_probs=79.7

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.++...|++++|+..|+++++++|+++.++..+|.+ ..+|        ++.+|+  ..+.+.+..+|++..     
T Consensus        52 ~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~--------~~~~A~--~~~~~a~~~~p~~~~-----  116 (166)
T 1a17_A           52 NRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG--------KFRAAL--RDYETVVKVKPHDKD-----  116 (166)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHSTTCHH-----
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhc--------cHHHHH--HHHHHHHHhCCCCHH-----
Confidence            579999999999999999999999999999999999999 9999        667777  777777777775421     


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT  134 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  134 (150)
                                           ...+..++..+...|++++|++.+.++..+.+.
T Consensus       117 ---------------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  149 (166)
T 1a17_A          117 ---------------------AKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS  149 (166)
T ss_dssp             ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------HHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence                                 223345566678899999999999998776543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.16  E-value=2.7e-10  Score=80.34  Aligned_cols=116  Identities=12%  Similarity=0.195  Sum_probs=92.2

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhcc--------CCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKL--------DPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPR   72 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~--------~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~   72 (150)
                      .+|.+|...|++++|+..|++++++        +|....++..++.+ ...|        ++.+|+  ..+.+++...  
T Consensus        74 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~--~~~~~a~~~~--  141 (311)
T 3nf1_A           74 ILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG--------KYKEAE--PLCKRALEIR--  141 (311)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT--------CHHHHH--HHHHHHHHHH--
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC--------cHHHHH--HHHHHHHHHH--
Confidence            5799999999999999999999988        56778889999999 8888        556666  4444333221  


Q ss_pred             CCCCCCChHHHHHHHHH--hcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--------cCCCcchhhcH
Q psy3020          73 TKPFLSDPSYVQMIKEI--QKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKL--------DGTNHILFSNR  142 (150)
Q Consensus        73 ~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~n~  142 (150)
                                    ...  ...+.      ....+..+|.++...|++++|+++|++++++        +|..+.+++++
T Consensus       142 --------------~~~~~~~~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  201 (311)
T 3nf1_A          142 --------------EKVLGKDHPD------VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNL  201 (311)
T ss_dssp             --------------HHHHCTTCHH------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHH
T ss_pred             --------------HHhcCCCChH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence                          111  11122      2788999999999999999999999999999        88888899999


Q ss_pred             HHHHHhc
Q psy3020         143 SAAFAKA  149 (150)
Q Consensus       143 a~~~~~~  149 (150)
                      |.+|..+
T Consensus       202 a~~~~~~  208 (311)
T 3nf1_A          202 ASCYLKQ  208 (311)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            9999865

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.16  E-value=5.2e-11  Score=85.47  Aligned_cols=136  Identities=7%  Similarity=0.051  Sum_probs=74.8

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCC------cHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCC
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPN------NEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKP   75 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~------~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~   75 (150)
                      .|.+|...|++++|+++|.+++++.+.      -..++..++.+ ..+|+        +.+|+  ..+.+++.+.+....
T Consensus        42 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~--------~~~A~--~~~~~Al~l~~~~g~  111 (307)
T 2ifu_A           42 AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQR--------MPEAV--QYIEKASVMYVENGT  111 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------GGGGH--HHHHHHHHHHHTTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC--------HHHHH--HHHHHHHHHHHHcCC
Confidence            466677777777777777777776553      27777777777 66663        33333  333333333221110


Q ss_pred             C-------------CCChHHHHHHHHHhcCcchhh----hHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCc--
Q psy3020          76 F-------------LSDPSYVQMIKEIQKDPSLMT----LEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNH--  136 (150)
Q Consensus        76 ~-------------~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~--  136 (150)
                      .             +....+...+..+.+......    .......+.++|.++...|+|++|+++|++++++.|++.  
T Consensus       112 ~~~~a~~~~~lg~~~~~g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  191 (307)
T 2ifu_A          112 PDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENY  191 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Confidence            0             000011111111110000000    001156788888888889999999999999998877654  


Q ss_pred             ----chhhcHHHHHHh
Q psy3020         137 ----ILFSNRSAAFAK  148 (150)
Q Consensus       137 ----~~~~n~a~~~~~  148 (150)
                          ..+.++|.++..
T Consensus       192 ~~~~~~~~~~g~~~~~  207 (307)
T 2ifu_A          192 PTCYKKCIAQVLVQLH  207 (307)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHH
Confidence                366777777764

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.15  E-value=8.6e-11  Score=86.28  Aligned_cols=116  Identities=16%  Similarity=0.101  Sum_probs=78.8

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCC-------cHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPN-------NEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRT   73 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~-------~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~   73 (150)
                      .+|.+|...|++++|+..|++|+++.|.       .+.++..+|.+ ..+|        ++.+|+  ..+.+++.+.+..
T Consensus       146 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~--------~~~~A~--~~~~~al~~~~~~  215 (378)
T 3q15_A          146 KVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFK--------HYDKAL--PHLEAALELAMDI  215 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhC--------CHHHHH--HHHHHHHHHHHHc
Confidence            5899999999999999999999997553       24467788888 8888        566666  5555555433211


Q ss_pred             CCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHh-----hcCCCcchhhcHHHHHHh
Q psy3020          74 KPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIK-----LDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        74 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-----~~p~~~~~~~n~a~~~~~  148 (150)
                      ..                .+      ....++.++|.++...|++++|+++|+++++     .+|..+.+++++|.+|.+
T Consensus       216 ~~----------------~~------~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~  273 (378)
T 3q15_A          216 QN----------------DR------FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK  273 (378)
T ss_dssp             TC----------------HH------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             CC----------------HH------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH
Confidence            10                00      1145666677777777777777777777776     666666666677766665


Q ss_pred             c
Q psy3020         149 A  149 (150)
Q Consensus       149 ~  149 (150)
                      +
T Consensus       274 ~  274 (378)
T 3q15_A          274 A  274 (378)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.15  E-value=4.3e-10  Score=82.11  Aligned_cols=116  Identities=14%  Similarity=0.164  Sum_probs=90.9

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcH----HHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNE----QMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF   76 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~----~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~   76 (150)
                      ..|.++...|++++|+..|+++++++|+++    .++..+|.+ ...|        ++.+++  ..+.+++.+.+.    
T Consensus        14 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~--~~~~~al~~~~~----   79 (406)
T 3sf4_A           14 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH--------DYAKAL--EYHHHDLTLART----   79 (406)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHHHH----
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhc--------CHHHHH--HHHHHHHHHHHh----
Confidence            479999999999999999999999999985    577888988 8888        566666  444444332211    


Q ss_pred             CCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCc------chhhcHHHHHHhc
Q psy3020          77 LSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNH------ILFSNRSAAFAKA  149 (150)
Q Consensus        77 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~n~a~~~~~~  149 (150)
                                  ....+      ..+.++..+|.++...|++++|+.+|.+++++.|...      .++.++|.+|..+
T Consensus        80 ------------~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~  140 (406)
T 3sf4_A           80 ------------IGDQL------GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK  140 (406)
T ss_dssp             ------------TTCHH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             ------------ccccH------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHc
Confidence                        11111      2278899999999999999999999999999988764      4888999988754

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.14  E-value=6.5e-10  Score=78.68  Aligned_cols=116  Identities=14%  Similarity=0.160  Sum_probs=89.9

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcH----HHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNE----QMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF   76 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~----~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~   76 (150)
                      ..|.++...|++++|+..|+++++++|+++    .++..++.+ ...|        ++.+++  ..+.+++...+     
T Consensus        10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~--~~~~~al~~~~-----   74 (338)
T 3ro2_A           10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH--------DYAKAL--EYHHHDLTLAR-----   74 (338)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHHH-----
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHHhh-----
Confidence            468999999999999999999999999985    577788888 8888        556665  44443332211     


Q ss_pred             CCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcc------hhhcHHHHHHhc
Q psy3020          77 LSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHI------LFSNRSAAFAKA  149 (150)
Q Consensus        77 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~n~a~~~~~~  149 (150)
                                 .....+      ..+..+..+|.++...|++++|++.|.+++++.|....      ++.++|.+|..+
T Consensus        75 -----------~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~  136 (338)
T 3ro2_A           75 -----------TIGDQL------GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK  136 (338)
T ss_dssp             -----------HHTCHH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             -----------cccccH------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHc
Confidence                       111111      22788999999999999999999999999999887654      888899888754

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.14  E-value=3e-11  Score=81.19  Aligned_cols=125  Identities=13%  Similarity=0.003  Sum_probs=91.3

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChH
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPS   81 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~   81 (150)
                      .+.+...+|++++|.+.|+......+..+..+..+|.+ ...|        ++.+|+  ..+.+++...|+...+... .
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------~~~~A~--~~~~~al~~~~~~~~~~~~-~   78 (198)
T 2fbn_A           10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKN--------EINEAI--VKYKEALDFFIHTEEWDDQ-I   78 (198)
T ss_dssp             ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHTTTTCTTCCCH-H
T ss_pred             hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHHHhcccccchh-h
Confidence            35566778899999999988888888888899999999 8888        778888  8888888888876643210 0


Q ss_pred             HHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          82 YVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      ......           ......+..+|.+++..|++++|+.+|+++++++|+++.+++++|.+|..+
T Consensus        79 ~~~~~~-----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  135 (198)
T 2fbn_A           79 LLDKKK-----------NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYF  135 (198)
T ss_dssp             HHHHHH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHH-----------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence            000000           011578999999999999999999999999999999999999999999865

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.14  E-value=3.7e-10  Score=87.76  Aligned_cols=113  Identities=12%  Similarity=0.144  Sum_probs=87.6

Q ss_pred             HHhhCCH-HHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccC--CCCCchhhhhCChHHHHhhccCCCCCCCCCChHH
Q psy3020           7 LSYLGRY-KESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDM--NRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSY   82 (150)
Q Consensus         7 ~~~~~~~-~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~--~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~   82 (150)
                      ....|.+ ++|++.++++|+++|++..+|...+.+ ..++....  .....+.+++  ..+..++..+|+.         
T Consensus        38 ~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL--~~~~~~l~~~pK~---------  106 (567)
T 1dce_A           38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAEL--GFLESCLRVNPKS---------  106 (567)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH--HHHHHHHHHCTTC---------
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHH--HHHHHHHHhCCCC---------
Confidence            3344444 578999999999999999999999999 88773100  0000145555  5555555555543         


Q ss_pred             HHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhc--CHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          83 VQMIKEIQKDPSLMTLEAKISLLKDKGNAALQAN--NFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        83 ~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                                         ..+|..+++++.+.+  +++++++++.+++++||.|..+|++|+.++..+
T Consensus       107 -------------------y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l  156 (567)
T 1dce_A          107 -------------------YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA  156 (567)
T ss_dssp             -------------------HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             -------------------HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence                               889999999999999  779999999999999999999999999987654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.14  E-value=4.5e-10  Score=81.08  Aligned_cols=130  Identities=9%  Similarity=0.000  Sum_probs=98.9

Q ss_pred             HHHhhCCH-HHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC-CChHH
Q psy3020           6 CLSYLGRY-KESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL-SDPSY   82 (150)
Q Consensus         6 ~~~~~~~~-~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~-~~~~~   82 (150)
                      +....|.+ ++|+..++++|.++|++..+|...+.+ ..++. .     .+.+++  ..+...+..+|++..+- .+...
T Consensus        41 a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~-~-----~~~eeL--~~~~~~L~~nPk~y~aW~~R~~i  112 (306)
T 3dra_A           41 ALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPN-R-----NLYDEL--DWCEEIALDNEKNYQIWNYRQLI  112 (306)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTT-S-----CHHHHH--HHHHHHHHHCTTCCHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHccc-c-----cHHHHH--HHHHHHHHHCcccHHHHHHHHHH
Confidence            33445555 689999999999999999999999999 77772 1     567777  77788889999887631 11111


Q ss_pred             HH-----------------H-HHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHH--HHHHHHHHHHhhcCCCcchhhcH
Q psy3020          83 VQ-----------------M-IKEIQKDPSLMTLEAKISLLKDKGNAALQANNFK--EAIEAYSEAIKLDGTNHILFSNR  142 (150)
Q Consensus        83 ~~-----------------~-~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~A~~~~~~al~~~p~~~~~~~n~  142 (150)
                      ..                 . -..+..+|..      ..+|..++.+....|.++  +++++++++++.||.|..+|++|
T Consensus       113 L~~~~~~l~~~~~~~~EL~~~~~~l~~~pkn------y~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R  186 (306)
T 3dra_A          113 IGQIMELNNNDFDPYREFDILEAMLSSDPKN------HHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHR  186 (306)
T ss_dssp             HHHHHHHTTTCCCTHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHhccccCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            10                 0 0112333433      899999999999999999  99999999999999999999999


Q ss_pred             HHHHHhc
Q psy3020         143 SAAFAKA  149 (150)
Q Consensus       143 a~~~~~~  149 (150)
                      +.++..+
T Consensus       187 ~~ll~~l  193 (306)
T 3dra_A          187 FFLLFSK  193 (306)
T ss_dssp             HHHHHSS
T ss_pred             HHHHHhc
Confidence            9987653

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.13  E-value=2.9e-10  Score=74.44  Aligned_cols=93  Identities=11%  Similarity=0.068  Sum_probs=75.3

Q ss_pred             HHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHH
Q psy3020          31 EQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKG  109 (150)
Q Consensus        31 ~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g  109 (150)
                      ++.+..+|.. ...|        .+.+|+  ..+.+++.++|+++..-          .+...|      ..+.+|.++|
T Consensus        11 a~~~~~~G~~l~~~g--------~~eeAi--~~Y~kAL~l~p~~~~~~----------a~~~~~------~~a~a~~n~g   64 (159)
T 2hr2_A           11 AYLALSDAQRQLVAG--------EYDEAA--ANCRRAMEISHTMPPEE----------AFDHAG------FDAFCHAGLA   64 (159)
T ss_dssp             HHHHHHHHHHHHHHT--------CHHHHH--HHHHHHHHHHTTSCTTS----------CCCHHH------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCC--------CHHHHH--HHHHHHHhhCCCCcchh----------hhhhcc------chHHHHHHHH
Confidence            4556778888 8888        778888  99999999999854410          000001      1266999999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhh-------cCCCcchh----hcHHHHHHhc
Q psy3020         110 NAALQANNFKEAIEAYSEAIKL-------DGTNHILF----SNRSAAFAKA  149 (150)
Q Consensus       110 ~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~----~n~a~~~~~~  149 (150)
                      .++...|+|++|+.+|++||++       +|+++.+|    +|+|.++..+
T Consensus        65 ~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~l  115 (159)
T 2hr2_A           65 EALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGL  115 (159)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHC
Confidence            9999999999999999999999       99999999    9999999875

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.13  E-value=8e-10  Score=79.76  Aligned_cols=103  Identities=12%  Similarity=0.010  Sum_probs=85.4

Q ss_pred             CCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHH
Q psy3020          11 GRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEI   89 (150)
Q Consensus        11 ~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l   89 (150)
                      +++++++..++++|+++|.|..+|...+-+ ..+|..      ...+.+  ..+.+.+..+|.+                
T Consensus       124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~------~~~~EL--~~~~~~i~~d~~N----------------  179 (306)
T 3dra_A          124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLH------NDAKEL--SFVDKVIDTDLKN----------------  179 (306)
T ss_dssp             CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCT------TCHHHH--HHHHHHHHHCTTC----------------
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc------ChHHHH--HHHHHHHHhCCCC----------------
Confidence            789999999999999999999999999998 877732      111455  4555555555543                


Q ss_pred             hcCcchhhhHHHhHHHHHHHHHHHHhcC------HHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          90 QKDPSLMTLEAKISLLKDKGNAALQANN------FKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                                  ..+|..++.++...+.      ++++++++.++|.++|+|..+|++++.++.+.
T Consensus       180 ------------~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~  233 (306)
T 3dra_A          180 ------------NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERF  233 (306)
T ss_dssp             ------------HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT
T ss_pred             ------------HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhc
Confidence                        7889999999988887      99999999999999999999999999888653

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.13  E-value=4e-10  Score=70.31  Aligned_cols=79  Identities=13%  Similarity=-0.008  Sum_probs=67.5

Q ss_pred             HHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHH
Q psy3020          33 MKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNA  111 (150)
Q Consensus        33 a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~  111 (150)
                      .+..+|.+ ...|        ++.+|+  ..+.+++..+|++                            +.+|..+|.+
T Consensus        19 ~~~~~g~~~~~~g--------~~~~A~--~~~~~al~~~P~~----------------------------~~a~~~lg~~   60 (121)
T 1hxi_A           19 NPMEEGLSMLKLA--------NLAEAA--LAFEAVCQKEPER----------------------------EEAWRSLGLT   60 (121)
T ss_dssp             CHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHSTTC----------------------------HHHHHHHHHH
T ss_pred             hHHHHHHHHHHcC--------CHHHHH--HHHHHHHHHCCCC----------------------------HHHHHHHHHH
Confidence            35667777 7777        667777  7777777777754                            7889999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         112 ALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       112 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      +...|++++|+.+|+++++++|+++.+++++|.+|..+
T Consensus        61 ~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           61 QAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999764

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.11  E-value=1.6e-10  Score=73.71  Aligned_cols=116  Identities=11%  Similarity=0.066  Sum_probs=82.9

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcH------HHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNE------QMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTK   74 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~------~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~   74 (150)
                      .+|.++...|++++|+..|++++++.|...      .++..+|.+ ..+|        ++.+++  ..+.+++...+...
T Consensus        14 ~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~--~~~~~a~~~~~~~~   83 (164)
T 3ro3_A           14 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLG--------EFETAS--EYYKKTLLLARQLK   83 (164)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHHHHHhC
Confidence            579999999999999999999999876433      367788888 8888        566666  55555544333211


Q ss_pred             CCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCC------cchhhcHHHHHHh
Q psy3020          75 PFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTN------HILFSNRSAAFAK  148 (150)
Q Consensus        75 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~n~a~~~~~  148 (150)
                      .                .+      .....+..+|.++...|++++|++++.+++++.+..      +..+.++|.+|..
T Consensus        84 ~----------------~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~  141 (164)
T 3ro3_A           84 D----------------RA------VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA  141 (164)
T ss_dssp             C----------------HH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             C----------------cH------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH
Confidence            1                00      115677888888888888888888888888775432      4567777777765


Q ss_pred             c
Q psy3020         149 A  149 (150)
Q Consensus       149 ~  149 (150)
                      +
T Consensus       142 ~  142 (164)
T 3ro3_A          142 L  142 (164)
T ss_dssp             H
T ss_pred             c
Confidence            4

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.10  E-value=8.7e-11  Score=85.68  Aligned_cols=98  Identities=15%  Similarity=0.158  Sum_probs=53.6

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      ++|.||..+|+|++|+.+|+++|+++|+++.++..+|.+ ..+|        ++.+|.  ..+.+++.++|++.      
T Consensus       235 nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g--------~~~~A~--~~l~~al~l~p~~~------  298 (338)
T 2if4_A          235 NIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELG--------QMDSAR--DDFRKAQKYAPDDK------  298 (338)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT--------CHHHHH--HHHHHTTC------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHHCCCCH------
Confidence            589999999999999999999999999999999999999 9999        778888  88888898888653      


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHH-HHhcCHHHHHHHHHHHHhhcCCCcc
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAA-LQANNFKEAIEAYSEAIKLDGTNHI  137 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~~~  137 (150)
                                            .++..++.+. ...+..+++...|.+++..+|+++.
T Consensus       299 ----------------------~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          299 ----------------------AIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ----------------------------------------------------------
T ss_pred             ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence                                  3444555553 4567788999999999999998764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.09  E-value=7.1e-10  Score=78.16  Aligned_cols=116  Identities=16%  Similarity=0.186  Sum_probs=92.1

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhcc--------CCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKL--------DPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPR   72 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~--------~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~   72 (150)
                      .+|.++...|++++|+..|++++++        +|....++..++.+ ...|        ++.+|+  ..+.+++...  
T Consensus        32 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--------~~~~A~--~~~~~al~~~--   99 (311)
T 3nf1_A           32 NLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN--------KYKDAA--NLLNDALAIR--   99 (311)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHH--
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC--------CHHHHH--HHHHHHHHHH--
Confidence            5799999999999999999999995        77888899999999 8888        556666  4444443321  


Q ss_pred             CCCCCCChHHHHHHHHH--hcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc--------CCCcchhhcH
Q psy3020          73 TKPFLSDPSYVQMIKEI--QKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLD--------GTNHILFSNR  142 (150)
Q Consensus        73 ~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~n~  142 (150)
                                    ...  ...+      .....+..+|.++...|++++|+++|.+++++.        |....+++++
T Consensus       100 --------------~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  159 (311)
T 3nf1_A          100 --------------EKTLGKDHP------AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNL  159 (311)
T ss_dssp             --------------HHHHCTTCH------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             --------------HHHhCCCCh------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence                          111  1112      227889999999999999999999999999985        6678889999


Q ss_pred             HHHHHhc
Q psy3020         143 SAAFAKA  149 (150)
Q Consensus       143 a~~~~~~  149 (150)
                      |.++..+
T Consensus       160 a~~~~~~  166 (311)
T 3nf1_A          160 ALLCQNQ  166 (311)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHc
Confidence            9998765

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.09  E-value=2e-09  Score=75.35  Aligned_cols=125  Identities=14%  Similarity=0.073  Sum_probs=90.5

Q ss_pred             hhhHHHHh----hCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hh----hhhccCCCCCchhhhhCChHHHHhhccCCC
Q psy3020           2 TTYSCLSY----LGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RN----QEMNDMNRGDPFANLFSDPNIFVQLQLDPR   72 (150)
Q Consensus         2 ~lg~~~~~----~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~----~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~   72 (150)
                      .+|.+|..    .+++++|+..|+++++.+  ++.++..++.+ ..    .+        ++.+++  ..+.+++...+.
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~--------~~~~A~--~~~~~a~~~~~~  146 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTR--------DFKKAV--EYFTKACDLNDG  146 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCC--------CHHHHH--HHHHHHHHTTCH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCccc--------CHHHHH--HHHHHHHhcCcH
Confidence            57899999    999999999999999884  88999999998 65    55        666777  666666665431


Q ss_pred             CCCC------CC----ChHHHHHHHH----HhcCcchhhhHHHhHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhcCC
Q psy3020          73 TKPF------LS----DPSYVQMIKE----IQKDPSLMTLEAKISLLKDKGNAALQ----ANNFKEAIEAYSEAIKLDGT  134 (150)
Q Consensus        73 ~~~~------~~----~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~  134 (150)
                      ....      ..    ...+...+..    +..++        +.++..+|.++..    .+++++|+++|+++++.+| 
T Consensus       147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~--------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-  217 (273)
T 1ouv_A          147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD--------SPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-  217 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-
Confidence            1100      00    0011111111    11111        6788999999999    9999999999999999977 


Q ss_pred             CcchhhcHHHHHHh
Q psy3020         135 NHILFSNRSAAFAK  148 (150)
Q Consensus       135 ~~~~~~n~a~~~~~  148 (150)
                       +.+++++|.+|..
T Consensus       218 -~~a~~~l~~~~~~  230 (273)
T 1ouv_A          218 -GGGCFNLGAMQYN  230 (273)
T ss_dssp             -HHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHHHc
Confidence             8889999999875

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.08  E-value=5.2e-10  Score=74.55  Aligned_cols=100  Identities=12%  Similarity=0.145  Sum_probs=66.4

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhc------cCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLK------LDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTK   74 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~------~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~   74 (150)
                      .+|.++...|++++|+..|+++++      ..|....++..+|.+ ..+|        ++.++.  ..+.+++.......
T Consensus        31 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~--~~~~~al~~~~~~~  100 (203)
T 3gw4_A           31 MLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG--------NWDAAR--RCFLEERELLASLP  100 (203)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHHHHHcC
Confidence            579999999999999999999999      666777888999999 8888        556666  55555544311110


Q ss_pred             CCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q psy3020          75 PFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLD  132 (150)
Q Consensus        75 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~  132 (150)
                      .                .+.     .....+..+|.++...|++++|++++.+++++.
T Consensus       101 ~----------------~~~-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  137 (203)
T 3gw4_A          101 E----------------DPL-----AASANAYEVATVALHFGDLAGARQEYEKSLVYA  137 (203)
T ss_dssp             C----------------CHH-----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             c----------------cHH-----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            0                000     014455566666666666666666666666543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.08  E-value=5.8e-09  Score=74.10  Aligned_cols=115  Identities=12%  Similarity=0.087  Sum_probs=88.0

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHH------HHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCC
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQM------KEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKP   75 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a------~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~   75 (150)
                      .+..+...|+|++|++.|+++++..|.....      +..++.+ ...|        ++.+|+  ..+.+++...+....
T Consensus        81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~A~--~~~~~al~~~~~~~~  150 (293)
T 2qfc_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV--------DYEYCI--LELKKLLNQQLTGID  150 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSS--------CHHHHH--HHHHHHHTTCCCSSC
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCC--------CHHHHH--HHHHHHHHHHhcCCc
Confidence            4677889999999999999999998876532      3455666 6666        667777  777777766554322


Q ss_pred             CCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHH---hhcCCCc----chhhcHHHHHHh
Q psy3020          76 FLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAI---KLDGTNH----ILFSNRSAAFAK  148 (150)
Q Consensus        76 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~----~~~~n~a~~~~~  148 (150)
                      ..                      ....++..+|.++...|++++|+++|++++   +..|++.    .+++|+|.+|..
T Consensus       151 ~~----------------------~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~  208 (293)
T 2qfc_A          151 VY----------------------QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL  208 (293)
T ss_dssp             TT----------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred             hH----------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH
Confidence            11                      116789999999999999999999999999   5566543    689999999987


Q ss_pred             c
Q psy3020         149 A  149 (150)
Q Consensus       149 ~  149 (150)
                      +
T Consensus       209 ~  209 (293)
T 2qfc_A          209 D  209 (293)
T ss_dssp             T
T ss_pred             H
Confidence            5

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.08  E-value=2.7e-10  Score=81.71  Aligned_cols=47  Identities=15%  Similarity=0.186  Sum_probs=42.0

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCC------cchhhcHHHHHHhc
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTN------HILFSNRSAAFAKA  149 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~n~a~~~~~~  149 (150)
                      ..++.++|.++.. |++++|+++|++++++.|..      ..++.++|.+|..+
T Consensus       116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~  168 (307)
T 2ifu_A          116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQ  168 (307)
T ss_dssp             HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHc
Confidence            6788999999988 99999999999999999865      57889999998865

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.07  E-value=2.3e-10  Score=83.60  Aligned_cols=138  Identities=15%  Similarity=0.159  Sum_probs=95.1

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhcc------CCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKL------DPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTK   74 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~------~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~   74 (150)
                      .+|.++...|++++|+..|++++++      .|..+.++..+|.+ ..+|        ++.+|+  ..+.+++...|...
T Consensus        52 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g--------~~~~A~--~~~~~al~~~~~~~  121 (406)
T 3sf4_A           52 QLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG--------NFDEAI--VCCQRHLDISRELN  121 (406)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHHHHhcc
Confidence            5799999999999999999999988      56667888999999 8888        556666  55666655544332


Q ss_pred             C------CCC--------ChH--------------------HHHHHHHHhcCcchhh----hHHHhHHHHHHHHHHHHhc
Q psy3020          75 P------FLS--------DPS--------------------YVQMIKEIQKDPSLMT----LEAKISLLKDKGNAALQAN  116 (150)
Q Consensus        75 ~------~~~--------~~~--------------------~~~~~~~l~~~~~~~~----~~~~~~~~~~~g~~~~~~~  116 (150)
                      .      .+.        ...                    +...+..+.+......    .+.....+..+|.++...|
T Consensus       122 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  201 (406)
T 3sf4_A          122 DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG  201 (406)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcc
Confidence            1      000        001                    1111111111000000    0122668889999999999


Q ss_pred             CHHHHHHHHHHHHhhcCCCcc------hhhcHHHHHHhc
Q psy3020         117 NFKEAIEAYSEAIKLDGTNHI------LFSNRSAAFAKA  149 (150)
Q Consensus       117 ~~~~A~~~~~~al~~~p~~~~------~~~n~a~~~~~~  149 (150)
                      ++++|+++|.+++++.|+...      ++.++|.+|..+
T Consensus       202 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  240 (406)
T 3sf4_A          202 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL  240 (406)
T ss_dssp             BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence            999999999999999888766      889999998765

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.07  E-value=5.8e-10  Score=82.03  Aligned_cols=48  Identities=19%  Similarity=0.091  Sum_probs=35.0

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcc------hhhcHHHHHHhc
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHI------LFSNRSAAFAKA  149 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~------~~~n~a~~~~~~  149 (150)
                      ...+..+|.++...|++++|+++|.+++++.|....      .++++|.+|..+
T Consensus       223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  276 (411)
T 4a1s_A          223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFL  276 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHC
Confidence            567777777777777777777777777777776555      677777777654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.07  E-value=1.4e-09  Score=79.66  Aligned_cols=106  Identities=6%  Similarity=-0.028  Sum_probs=89.3

Q ss_pred             HHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHH
Q psy3020           6 CLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQ   84 (150)
Q Consensus         6 ~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~   84 (150)
                      .+...+..++|++.++++|.++|++..+|...+.+ ..++.       .+.+++  ..+...+..+|++           
T Consensus        63 ~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~-------~l~eEL--~~~~~~L~~nPKn-----------  122 (349)
T 3q7a_A           63 IAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNK-------SLEDEL--RLMNEFAVQNLKS-----------  122 (349)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------CHHHHH--HHHHHHHHTTCCC-----------
T ss_pred             HHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhh-------hHHHHH--HHHHHHHHhCCCc-----------
Confidence            34555667899999999999999999999999999 77772       255666  5666666666653           


Q ss_pred             HHHHHhcCcchhhhHHHhHHHHHHHHHHHHh-c-CHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          85 MIKEIQKDPSLMTLEAKISLLKDKGNAALQA-N-NFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        85 ~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~-~-~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                                       ..+|..++.++... + +++++++.+.++++++|.|..+|++|+.++..
T Consensus       123 -----------------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~  171 (349)
T 3q7a_A          123 -----------------YQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSH  171 (349)
T ss_dssp             -----------------HHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHH
T ss_pred             -----------------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence                             78999999999887 7 99999999999999999999999999988754

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.05  E-value=1.9e-09  Score=73.37  Aligned_cols=131  Identities=8%  Similarity=-0.014  Sum_probs=91.3

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC---
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL---   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~---   77 (150)
                      .+|.+|...+++++|++.|+++++.  +++.++..++.+ .. +..    ..++.+++  .-+.++..  +.+....   
T Consensus        23 ~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~----~~~~~~A~--~~~~~A~~--~g~~~a~~~L   91 (212)
T 3rjv_A           23 YLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQ----QADYPQAR--QLAEKAVE--AGSKSGEIVL   91 (212)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STT----SCCHHHHH--HHHHHHHH--TTCHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCC----CCCHHHHH--HHHHHHHH--CCCHHHHHHH
Confidence            5899999999999999999999865  689999999999 65 411    11455665  44544432  2333210   


Q ss_pred             -----C----ChHHHHHH---HH-HhcCcchhhhHHHhHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhcCCCcchhh
Q psy3020          78 -----S----DPSYVQMI---KE-IQKDPSLMTLEAKISLLKDKGNAALQ----ANNFKEAIEAYSEAIKLDGTNHILFS  140 (150)
Q Consensus        78 -----~----~~~~~~~~---~~-l~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~  140 (150)
                           .    ...+.+.+   .. +..++..    ..+.++..+|.++..    .+++++|+++|++++++ |.++.+++
T Consensus        92 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~----~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~  166 (212)
T 3rjv_A           92 ARVLVNRQAGATDVAHAITLLQDAARDSESD----AAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY  166 (212)
T ss_dssp             HHHHTCGGGSSCCHHHHHHHHHHHTSSTTSH----HHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred             HHHHHcCCCCccCHHHHHHHHHHHHHcCCCc----chHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence                 0    00111121   11 2222210    127899999999998    89999999999999999 77888999


Q ss_pred             cHHHHHHh
Q psy3020         141 NRSAAFAK  148 (150)
Q Consensus       141 n~a~~~~~  148 (150)
                      ++|.+|..
T Consensus       167 ~Lg~~y~~  174 (212)
T 3rjv_A          167 WAGMMFQQ  174 (212)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            99999975

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.05  E-value=2.3e-09  Score=78.14  Aligned_cols=101  Identities=16%  Similarity=0.054  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhc
Q psy3020          13 YKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQK   91 (150)
Q Consensus        13 ~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~   91 (150)
                      +++++.+++.+|..+|.+..+|...+-+ ..++..      .+.+++  ..+.+.+..+|.+                  
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~------~~~~EL--~~~~k~l~~dprN------------------  143 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP------NWAREL--ELCARFLEADERN------------------  143 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSC------CHHHHH--HHHHHHHHHCTTC------------------
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcc------cHHHHH--HHHHHHHHhCCCC------------------
Confidence            7899999999999999999999999988 777721      245555  5666666666643                  


Q ss_pred             CcchhhhHHHhHHHHHHHHHHHHhcC-HHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          92 DPSLMTLEAKISLLKDKGNAALQANN-FKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        92 ~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                                ..+|..++.+....|. ++++++++.++++.+|.|..+|++|+.++..+
T Consensus       144 ----------y~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          144 ----------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             ----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence                      7899999999999998 69999999999999999999999999987653

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.04  E-value=1.4e-09  Score=74.08  Aligned_cols=117  Identities=11%  Similarity=0.007  Sum_probs=79.2

Q ss_pred             HHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC--------CCC---hH
Q psy3020          14 KESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF--------LSD---PS   81 (150)
Q Consensus        14 ~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~--------~~~---~~   81 (150)
                      .+|+..|+++.+.  .++.++..++.+ ...+        ++.+|+  .-+.++....  +...        ...   ..
T Consensus         3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~--------~~~~A~--~~~~~a~~~g--~~~a~~~lg~~y~~~g~~~~   68 (212)
T 3rjv_A            3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSG--------DYQKAE--YWAQKAAAQG--DGDALALLAQLKIRNPQQAD   68 (212)
T ss_dssp             -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHT--------CHHHHH--HHHHHHHHTT--CHHHHHHHHHHTTSSTTSCC
T ss_pred             chHHHHHHHHHHC--CCHHHHHHHHHHHhcCC--------CHHHHH--HHHHHHHHcC--CHHHHHHHHHHHHcCCCCCC
Confidence            4688999999875  899999999999 7777        556666  5555554321  1110        000   01


Q ss_pred             HHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhcC--CCcchhhcHHHHHHh
Q psy3020          82 YVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQ----ANNFKEAIEAYSEAIKLDG--TNHILFSNRSAAFAK  148 (150)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p--~~~~~~~n~a~~~~~  148 (150)
                      +...+.-+.+...    ...+.++..+|.++..    .+++++|+++|+++++..|  +++.+++++|.+|..
T Consensus        69 ~~~A~~~~~~A~~----~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~  137 (212)
T 3rjv_A           69 YPQARQLAEKAVE----AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS  137 (212)
T ss_dssp             HHHHHHHHHHHHH----TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence            1111111111000    0127889999999987    8999999999999999999  469999999999975

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.04  E-value=9.5e-10  Score=80.71  Aligned_cols=117  Identities=13%  Similarity=0.067  Sum_probs=90.4

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccC------CCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLD------PNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTK   74 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~------p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~   74 (150)
                      ..|..+...|++++|+..|++|+++-      |..+.++..+|.+ ..+|        ++..|+  ..+.+++.+.+...
T Consensus       106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~--------~~~~A~--~~~~~al~~~~~~~  175 (378)
T 3q15_A          106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK--------QTHVSM--YHILQALDIYQNHP  175 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHHHTST
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcC--------CcHHHH--HHHHHHHHHHHhCC
Confidence            36889999999999999999999873      3356688899999 8888        666777  66666655444322


Q ss_pred             CCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC------CcchhhcHHHHHHh
Q psy3020          75 PFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT------NHILFSNRSAAFAK  148 (150)
Q Consensus        75 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~n~a~~~~~  148 (150)
                      ...               +      ..+.++..+|.++...|++++|+++|.+++++.+.      ...+++|+|.+|..
T Consensus       176 ~~~---------------~------~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~  234 (378)
T 3q15_A          176 LYS---------------I------RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR  234 (378)
T ss_dssp             TCH---------------H------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             Cch---------------h------hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            100               0      11778999999999999999999999999997553      24688999999986


Q ss_pred             c
Q psy3020         149 A  149 (150)
Q Consensus       149 ~  149 (150)
                      +
T Consensus       235 ~  235 (378)
T 3q15_A          235 S  235 (378)
T ss_dssp             H
T ss_pred             C
Confidence            5

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.04  E-value=3.3e-09  Score=77.26  Aligned_cols=111  Identities=13%  Similarity=0.130  Sum_probs=83.3

Q ss_pred             HhhCCHH-HHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCC---CchhhhhCChHHHHhhccCCCCCCCCCChHH
Q psy3020           8 SYLGRYK-ESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRG---DPFANLFSDPNIFVQLQLDPRTKPFLSDPSY   82 (150)
Q Consensus         8 ~~~~~~~-~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~---~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~   82 (150)
                      ...|.++ +|++.+.++|.++|++..+|...+.+ ..++... .++   ..+.+.+  ..+...+..+|           
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~-~~~~~~~~l~~EL--~~~~~~L~~~P-----------  105 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEK-SPEESAALVKAEL--GFLESCLRVNP-----------  105 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHH--HHHHHHHHHCT-----------
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccc-cchhhhHHHHHHH--HHHHHHHHhCC-----------
Confidence            3456665 79999999999999999999999988 7666310 000   0123333  33333334444           


Q ss_pred             HHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhc--CHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          83 VQMIKEIQKDPSLMTLEAKISLLKDKGNAALQAN--NFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        83 ~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                                 ..      ..+|..++.++...+  .+++++.++.++++++|.|..+|++|+.+....
T Consensus       106 -----------Kn------y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l  157 (331)
T 3dss_A          106 -----------KS------YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA  157 (331)
T ss_dssp             -----------TC------HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             -----------CC------HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence                       33      889999999999988  499999999999999999999999999887543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.04  E-value=2e-09  Score=66.72  Aligned_cols=86  Identities=14%  Similarity=0.242  Sum_probs=74.9

Q ss_pred             cCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHH
Q psy3020          26 LDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISL  104 (150)
Q Consensus        26 ~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  104 (150)
                      ..|.++.++..+|.+ ...|        ++.+|+  ..+.+++..+|++                            ...
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~--------~~~~A~--~~~~~al~~~~~~----------------------------~~~   52 (133)
T 2lni_A           11 MNPDLALMVKNKGNECFQKG--------DYPQAM--KHYTEAIKRNPKD----------------------------AKL   52 (133)
T ss_dssp             SSSCHHHHHHHHHHHHHHTT--------CSHHHH--HHHHHHHTTCTTC----------------------------HHH
T ss_pred             cCcccHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHcCCCc----------------------------HHH
Confidence            467888999999999 8888        667777  7777777776643                            678


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       105 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      +..+|.++...|++++|+++|+++++++|+++.+++++|.++..+
T Consensus        53 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~   97 (133)
T 2lni_A           53 YSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAM   97 (133)
T ss_dssp             HHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999865

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.03  E-value=2.8e-09  Score=62.12  Aligned_cols=62  Identities=26%  Similarity=0.393  Sum_probs=54.9

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRT   73 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~   73 (150)
                      .+|.++...|++++|+..|+++++++|+++.++..+|.+ ..+|        ++.+|+  ..+.+++..+|++
T Consensus        14 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~--~~~~~a~~~~p~~   76 (91)
T 1na3_A           14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG--------DYDEAI--EYYQKALELDPNN   76 (91)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh--------hHHHHH--HHHHHHHhcCCCC
Confidence            478999999999999999999999999999999999999 8888        667777  7777777777754

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.02  E-value=9.8e-10  Score=66.16  Aligned_cols=76  Identities=13%  Similarity=0.183  Sum_probs=63.7

Q ss_pred             cCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHH
Q psy3020          26 LDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISL  104 (150)
Q Consensus        26 ~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  104 (150)
                      .+|+++.++..+|.+ ..+|        ++.+|+  ..+.+++..+|+.                            +.+
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g--------~~~~A~--~~~~~al~~~p~~----------------------------~~a   43 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHD--------NASRAL--ALFEELVETDPDY----------------------------VGT   43 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHSTTC----------------------------THH
T ss_pred             CCccCHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHhCCCc----------------------------HHH
Confidence            589999999999999 9999        777888  7888888888754                            678


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchh
Q psy3020         105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILF  139 (150)
Q Consensus       105 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  139 (150)
                      |..+|.++...|++++|++.|++++++.|++....
T Consensus        44 ~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~   78 (100)
T 3ma5_A           44 YYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQK   78 (100)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchh
Confidence            99999999999999999999999999998765443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.01  E-value=5.1e-09  Score=74.39  Aligned_cols=114  Identities=12%  Similarity=0.091  Sum_probs=86.1

Q ss_pred             hHHHHhhCCHHHHHHHHHHhhccCCCcHHH------HHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC
Q psy3020           4 YSCLSYLGRYKESISTYEEGLKLDPNNEQM------KEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF   76 (150)
Q Consensus         4 g~~~~~~~~~~~A~~~~~~aL~~~p~~~~a------~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~   76 (150)
                      +..+...|+|++|+..|+++++..|.++..      +..++.+ ...+        ++.+|+  ..+.+++...+.....
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~Ai--~~~~~al~~~~~~~~~  151 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV--------DYEYCI--LELKKLLNQQLTGIDV  151 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSS--------CHHHHH--HHHHHHHHTCCCCSCT
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHccc--------CHHHHH--HHHHHHHHHhcccccH
Confidence            566788999999999999999988877663      2345555 5555        667777  7777777755543331


Q ss_pred             CCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHh-------hcCCCcchhhcHHHHHHhc
Q psy3020          77 LSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIK-------LDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        77 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~n~a~~~~~~  149 (150)
                      .                      ....++..+|.++...|++++|+++|.++++       ..|..+.+++|+|.+|.++
T Consensus       152 ~----------------------~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~  209 (293)
T 3u3w_A          152 Y----------------------QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLD  209 (293)
T ss_dssp             T----------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT
T ss_pred             H----------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence            1                      1156789999999999999999999999995       3333456899999999875

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.00  E-value=7.5e-10  Score=78.36  Aligned_cols=138  Identities=15%  Similarity=0.163  Sum_probs=92.7

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhcc------CCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKL------DPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTK   74 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~------~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~   74 (150)
                      .+|.++...|++++|++.|++++++      .|..+.++..++.+ ...|        .+.+++  ..+.+++...+...
T Consensus        48 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~--~~~~~al~~~~~~~  117 (338)
T 3ro2_A           48 QLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG--------NFDEAI--VCCQRHLDISRELN  117 (338)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHcc--------CHHHHH--HHHHHHHHHHHHhc
Confidence            5789999999999999999999988      66677888999999 8888        556666  55555555444332


Q ss_pred             CC------CCC--------hH--------------------HHHHHHHHhcCcchhh----hHHHhHHHHHHHHHHHHhc
Q psy3020          75 PF------LSD--------PS--------------------YVQMIKEIQKDPSLMT----LEAKISLLKDKGNAALQAN  116 (150)
Q Consensus        75 ~~------~~~--------~~--------------------~~~~~~~l~~~~~~~~----~~~~~~~~~~~g~~~~~~~  116 (150)
                      ..      +..        ..                    +...+..+.+......    .+.....+..+|.++...|
T Consensus       118 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~  197 (338)
T 3ro2_A          118 DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLG  197 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred             CchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhC
Confidence            10      000        00                    1111111111000000    0122567888999999999


Q ss_pred             CHHHHHHHHHHHHhhcCCCcc------hhhcHHHHHHhc
Q psy3020         117 NFKEAIEAYSEAIKLDGTNHI------LFSNRSAAFAKA  149 (150)
Q Consensus       117 ~~~~A~~~~~~al~~~p~~~~------~~~n~a~~~~~~  149 (150)
                      ++++|+++|.+++++.|....      .+.++|.++..+
T Consensus       198 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~  236 (338)
T 3ro2_A          198 NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL  236 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc
Confidence            999999999999998877655      888888888764

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=2.4e-09  Score=67.69  Aligned_cols=92  Identities=16%  Similarity=0.182  Sum_probs=78.9

Q ss_pred             hhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHH
Q psy3020          23 GLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAK  101 (150)
Q Consensus        23 aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  101 (150)
                      +...+|++...+..++.+ ...|        ++.+++  ..+.+.+..+|+..                         ..
T Consensus        20 ~~~~~~~~~~~~~~~a~~~~~~~--------~~~~A~--~~~~~a~~~~~~~~-------------------------~~   64 (148)
T 2dba_A           20 PATPGASSVEQLRKEGNELFKCG--------DYGGAL--AAYTQALGLDATPQ-------------------------DQ   64 (148)
T ss_dssp             CCCTTCCCHHHHHHHHHHHHTTT--------CHHHHH--HHHHHHHTSCCCHH-------------------------HH
T ss_pred             CCccchHHHHHHHHHHHHHHHhC--------CHHHHH--HHHHHHHHHcccch-------------------------HH
Confidence            455778999999999999 8888        777888  78888888777521                         11


Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      ...|..+|.+++..|++++|++.|+++++++|+++.+++++|.+|..+
T Consensus        65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~  112 (148)
T 2dba_A           65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKL  112 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHc
Confidence            678999999999999999999999999999999999999999999865

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.99  E-value=7.2e-09  Score=79.30  Aligned_cols=119  Identities=8%  Similarity=-0.047  Sum_probs=72.1

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcH-HHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC---
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNE-QMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL---   77 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~-~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~---   77 (150)
                      +|..+...|++++|...|+++++++|+++ .+|..++.+ ...|        .+.+|.  ..+.+++...|......   
T Consensus       327 ~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~--------~~~~A~--~~~~~Al~~~~~~~~~~~~~  396 (530)
T 2ooe_A          327 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE--------GIKSGR--MIFKKAREDARTRHHVYVTA  396 (530)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHH--------HHHHHH--HHHHHHHTCTTCCTHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhc--------CHHHHH--HHHHHHHhccCCchHHHHHH
Confidence            56667777888888888888888888775 577777777 6666        445555  55666666555432110   


Q ss_pred             --------CCh-HHHHHH-HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcc
Q psy3020          78 --------SDP-SYVQMI-KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHI  137 (150)
Q Consensus        78 --------~~~-~~~~~~-~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~  137 (150)
                              .+. ...... ..+...|..      +..|..++..+...|++++|...|++++...|.++.
T Consensus       397 a~~~~~~~~~~~~A~~~~e~al~~~p~~------~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~  460 (530)
T 2ooe_A          397 ALMEYYCSKDKSVAFKIFELGLKKYGDI------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE  460 (530)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred             HHHHHHHcCChhHHHHHHHHHHHHCCCC------HHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence                    000 000000 012222322      667777777777777777777777777777666554

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.99  E-value=2.4e-09  Score=65.96  Aligned_cols=88  Identities=14%  Similarity=0.151  Sum_probs=73.5

Q ss_pred             hccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHh
Q psy3020          24 LKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKI  102 (150)
Q Consensus        24 L~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  102 (150)
                      .+.+|+++.++..+|.+ ...|        ++..|+  ..+.+.+..+|+.                            +
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~--------~~~~A~--~~~~~~~~~~~~~----------------------------~   46 (131)
T 2vyi_A            5 SEEDSAEAERLKTEGNEQMKVE--------NFEAAV--HFYGKAIELNPAN----------------------------A   46 (131)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC----------------------------H
T ss_pred             hhcchhhhHHHHHHHHHHHHcc--------CHHHHH--HHHHHHHHcCCCC----------------------------H
Confidence            34567788899999999 8888        667777  6666666666642                            6


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         103 SLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       103 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      ..+..+|.++...|++++|+++|.++++++|+++..++++|.++..+
T Consensus        47 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (131)
T 2vyi_A           47 VYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSL   93 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHh
Confidence            78899999999999999999999999999999999999999999865

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.98  E-value=8e-09  Score=75.69  Aligned_cols=137  Identities=9%  Similarity=0.003  Sum_probs=80.5

Q ss_pred             hHHHHhhC-CHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hhh-h-hccCCCCCchhhhh-CChH----------HHHhhc
Q psy3020           4 YSCLSYLG-RYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQ-E-MNDMNRGDPFANLF-SDPN----------IFVQLQ   68 (150)
Q Consensus         4 g~~~~~~~-~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~-g-~~~~~~~~~~~~a~-~~~~----------~~~~l~   68 (150)
                      |.++..++ .+++++..++++|..+|.+..+|..++.+ ..+ + ..+ +.-..+..++ .++.          +...+.
T Consensus        95 ~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~-~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~  173 (349)
T 3q7a_A           95 FSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPV-SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFS  173 (349)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCH-HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence            45566666 47777777777777777777777777766 544 3 111 0000111111 0000          000111


Q ss_pred             c-CCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcC-------HHHHHHHHHHHHhhcCCCcchhh
Q psy3020          69 L-DPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANN-------FKEAIEAYSEAIKLDGTNHILFS  140 (150)
Q Consensus        69 ~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~-------~~~A~~~~~~al~~~p~~~~~~~  140 (150)
                      . .+....... ..+.-.-..++.+|..      ..+|..++.++...+.       ++++++++.+++.++|+|..+|+
T Consensus       174 ~~~~~~~~~~~-eELe~~~k~I~~dp~N------~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~  246 (349)
T 3q7a_A          174 TLGRISEAQWG-SELDWCNEMLRVDGRN------NSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWN  246 (349)
T ss_dssp             HTTCCCHHHHH-HHHHHHHHHHHHCTTC------HHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cccccchhhHH-HHHHHHHHHHHhCCCC------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence            1 100000000 0111222335566666      8999999999988886       79999999999999999999999


Q ss_pred             cHHHHHHh
Q psy3020         141 NRSAAFAK  148 (150)
Q Consensus       141 n~a~~~~~  148 (150)
                      ++..++..
T Consensus       247 Ylr~Ll~~  254 (349)
T 3q7a_A          247 YLRGFLKH  254 (349)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            97766643

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.97  E-value=2.4e-09  Score=69.56  Aligned_cols=93  Identities=20%  Similarity=0.184  Sum_probs=70.3

Q ss_pred             cHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhcc--------CCCCCCCCCChHHHHHHHHHhcCcchhhhHH
Q psy3020          30 NEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQL--------DPRTKPFLSDPSYVQMIKEIQKDPSLMTLEA  100 (150)
Q Consensus        30 ~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  100 (150)
                      .+..+..+|.. ...|        ++.+|+  ..+.+++..        +|....      ..      ..+|      .
T Consensus        10 ~a~~~~~~G~~~~~~~--------~~~~A~--~~y~~al~~~~~~~~~~~~~~~~------~~------~~~~------~   61 (162)
T 3rkv_A           10 SVEALRQKGNELFVQK--------DYKEAI--DAYRDALTRLDTLILREKPGEPE------WV------ELDR------K   61 (162)
T ss_dssp             HHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHHHHHHHTSCTTSHH------HH------HHHH------T
T ss_pred             HHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHHHHHhcccCCCCHHH------HH------HHHH------H
Confidence            35667788888 8888        667777  667666655        222111      00      0011      2


Q ss_pred             HhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhcC
Q psy3020         101 KISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKAI  150 (150)
Q Consensus       101 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~~  150 (150)
                      ....|.++|.++++.|+|++|+.+|+++++++|+++.+|+++|.+|..+.
T Consensus        62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g  111 (162)
T 3rkv_A           62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAW  111 (162)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHh
Confidence            27899999999999999999999999999999999999999999998763

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.96  E-value=1.9e-09  Score=76.75  Aligned_cols=44  Identities=14%  Similarity=0.099  Sum_probs=38.5

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hhhhhc
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMN   46 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~   46 (150)
                      .++.++...|+|++|.+.|+.++..+|++. ++..++.+ ...+++
T Consensus       107 ayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~  151 (282)
T 4f3v_A          107 GFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERW  151 (282)
T ss_dssp             HHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCH
Confidence            367889999999999999999999999988 88888888 888854

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.94  E-value=1.2e-08  Score=61.73  Aligned_cols=82  Identities=13%  Similarity=0.145  Sum_probs=69.2

Q ss_pred             cHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHH
Q psy3020          30 NEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDK  108 (150)
Q Consensus        30 ~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  108 (150)
                      .+.++..+|.+ ...|        ++.+++  ..+.+.+..+|++                            +..+..+
T Consensus         3 ~~~~~~~~~~~~~~~~--------~~~~A~--~~~~~~~~~~~~~----------------------------~~~~~~~   44 (118)
T 1elw_A            3 QVNELKEKGNKALSVG--------NIDDAL--QCYSEAIKLDPHN----------------------------HVLYSNR   44 (118)
T ss_dssp             HHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC----------------------------HHHHHHH
T ss_pred             hHHHHHHHHHHHHHcc--------cHHHHH--HHHHHHHHHCCCc----------------------------HHHHHHH
Confidence            46677888888 7778        666777  6666666666643                            6788999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         109 GNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       109 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      |.++...|++++|+..++++++++|+++.+++++|.++..+
T Consensus        45 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~   85 (118)
T 1elw_A           45 SAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL   85 (118)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999865

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.94  E-value=3.9e-09  Score=69.54  Aligned_cols=115  Identities=8%  Similarity=0.004  Sum_probs=80.8

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCC--
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS--   78 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~--   78 (150)
                      .+|.++...|++++|+..|+++++++| ++..+..++.+ ...+ .      ....++  ..+.+++..+|++...+.  
T Consensus        45 ~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~-~------~~~~a~--~~~~~al~~~P~~~~~~~~l  114 (176)
T 2r5s_A           45 AKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQ-A------AESPEL--KRLEQELAANPDNFELACEL  114 (176)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHH-H------TSCHHH--HHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhh-c------ccchHH--HHHHHHHHhCCCCHHHHHHH
Confidence            579999999999999999999999999 88777666655 3221 1      112245  677888889998765311  


Q ss_pred             ------ChHHHHHH----HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q psy3020          79 ------DPSYVQMI----KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIK  130 (150)
Q Consensus        79 ------~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~  130 (150)
                            .+.+...+    ..+..+|..    ....++..+|.++...|++++|+..|.++|.
T Consensus       115 a~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          115 AVQYNQVGRDEEALELLWNILKVNLGA----QDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCTTT----TTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHhCccc----ChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence                  11111111    224445432    1256899999999999999999999999985

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.93  E-value=1.3e-08  Score=62.00  Aligned_cols=86  Identities=27%  Similarity=0.390  Sum_probs=68.9

Q ss_pred             cCCCc-HHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhH
Q psy3020          26 LDPNN-EQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKIS  103 (150)
Q Consensus        26 ~~p~~-~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  103 (150)
                      ++|.+ ..++..++.+ ...|        ++.+++  ..+.+.+...|+.                            ..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~--------~~~~A~--~~~~~~~~~~~~~----------------------------~~   44 (125)
T 1na0_A            3 MDPGNSAEAWYNLGNAYYKQG--------DYDEAI--EYYQKALELDPNN----------------------------AE   44 (125)
T ss_dssp             ----CHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC----------------------------HH
T ss_pred             CCccccHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHHCcCc----------------------------HH
Confidence            56765 7888999998 8888        666676  6666666555532                            66


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         104 LLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       104 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      .+..+|.++...|++++|+..|.++++++|+++..++++|.++..+
T Consensus        45 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~   90 (125)
T 1na0_A           45 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQ   90 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence            7899999999999999999999999999999999999999998764

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.91  E-value=2.7e-09  Score=64.18  Aligned_cols=62  Identities=6%  Similarity=0.037  Sum_probs=54.3

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRT   73 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~   73 (150)
                      .+|.+|...|++++|+..|+++++++|+++.++..+|.+ ..+|        ++.+|+  ..+.+++.+.|+.
T Consensus        12 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g--------~~~~A~--~~~~~al~l~~~~   74 (100)
T 3ma5_A           12 ALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLD--------RTDDAI--DTYAQGIEVAREE   74 (100)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHhhhhcC
Confidence            589999999999999999999999999999999999999 9999        667777  6777777666543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.89  E-value=6.1e-09  Score=74.06  Aligned_cols=116  Identities=9%  Similarity=-0.039  Sum_probs=82.7

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCC--
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS--   78 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~--   78 (150)
                      .+|.++...|++++|+..|++++..+|++...+...+.. ...+        ....++  ..+.+++..+|++.....  
T Consensus       156 ~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~--------~~~~a~--~~l~~al~~~P~~~~~~~~l  225 (287)
T 3qou_A          156 LLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQA--------ADTPEI--QQLQQQVAENPEDAALATQL  225 (287)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHH--------TSCHHH--HHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhc--------ccCccH--HHHHHHHhcCCccHHHHHHH
Confidence            589999999999999999999999999776665555554 5555        334455  677888888888765311  


Q ss_pred             ------ChHHHHH----HHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q psy3020          79 ------DPSYVQM----IKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKL  131 (150)
Q Consensus        79 ------~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~  131 (150)
                            ...+..+    .+.+..+|..    ....++..+|.++...|+.++|+..|++++..
T Consensus       226 a~~l~~~g~~~~A~~~l~~~l~~~p~~----~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~  284 (287)
T 3qou_A          226 ALQLHQVGRNEEALELLFGHLRXDLTA----ADGQTRXTFQEILAALGTGDALASXYRRQLYA  284 (287)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTG----GGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHhccccc----ccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence                  1111111    1223344433    23778999999999999999999999999863

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.89  E-value=3.6e-09  Score=65.21  Aligned_cols=64  Identities=16%  Similarity=0.198  Sum_probs=57.5

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKP   75 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~   75 (150)
                      .+|.+|...|++++|+..|+++++++|+++.++..+|.+ ..+|        ++.+|+  ..+.+++...|++..
T Consensus        32 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g--------~~~~A~--~~~~~al~~~p~~~~   96 (117)
T 3k9i_A           32 GLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLG--------RYEQGV--ELLLKIIAETSDDET   96 (117)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--------CHHHHH--HHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHhCCCcHH
Confidence            589999999999999999999999999999999999999 9999        777888  788888888886543

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.88  E-value=9.3e-09  Score=63.73  Aligned_cols=82  Identities=11%  Similarity=-0.023  Sum_probs=67.1

Q ss_pred             HHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHH
Q psy3020          33 MKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNA  111 (150)
Q Consensus        33 a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~  111 (150)
                      ++..+|.+ ...|        ++.+|+  ..+...+..+|++..                   .      +.++..+|.+
T Consensus         4 ~~~~~a~~~~~~~--------~~~~A~--~~~~~~~~~~p~~~~-------------------~------~~~~~~lg~~   48 (129)
T 2xev_A            4 TAYNVAFDALKNG--------KYDDAS--QLFLSFLELYPNGVY-------------------T------PNALYWLGES   48 (129)
T ss_dssp             CHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCSSSTT-------------------H------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC--------CHHHHH--HHHHHHHHHCCCCcc-------------------c------HHHHHHHHHH
Confidence            45667777 7777        667777  777777777775422                   0      4788999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhhcCCC---cchhhcHHHHHHhc
Q psy3020         112 ALQANNFKEAIEAYSEAIKLDGTN---HILFSNRSAAFAKA  149 (150)
Q Consensus       112 ~~~~~~~~~A~~~~~~al~~~p~~---~~~~~n~a~~~~~~  149 (150)
                      ++..|++++|+..|+++++.+|++   +.+++++|.+|..+
T Consensus        49 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~   89 (129)
T 2xev_A           49 YYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGE   89 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHT
T ss_pred             HHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHc
Confidence            999999999999999999999999   88899999999875

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.88  E-value=2.2e-08  Score=59.74  Aligned_cols=76  Identities=16%  Similarity=0.082  Sum_probs=61.8

Q ss_pred             CCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHH
Q psy3020          27 DPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLL  105 (150)
Q Consensus        27 ~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  105 (150)
                      +|++++++..+|.+ ...+...     ...++.  ..+.+++..+|++                            +.++
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~-----~~~~A~--~~l~~AL~~dp~~----------------------------~rA~   46 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQA-----MTDEVS--LLLEQALQLEPYN----------------------------EAAL   46 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTC-----CCHHHH--HHHHHHHHHCTTC----------------------------HHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCCC-----CCHHHH--HHHHHHHHHCcCC----------------------------HHHH
Confidence            79999999999998 5555321     245555  6677777777764                            7889


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcc
Q psy3020         106 KDKGNAALQANNFKEAIEAYSEAIKLDGTNHI  137 (150)
Q Consensus       106 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~  137 (150)
                      ..+|..+++.|+|++|+.+++++++.+|.++.
T Consensus        47 ~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A           47 SLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            99999999999999999999999999998443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.87  E-value=3.6e-09  Score=69.11  Aligned_cols=48  Identities=23%  Similarity=0.286  Sum_probs=44.0

Q ss_pred             hHHHHHHHHHHHHhcCH----------HHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         102 ISLLKDKGNAALQANNF----------KEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~----------~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      +.+|.++|.++...+++          ++|+.+|++||+++|+++.+|+|+|.+|..+
T Consensus        36 aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           36 ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            88999999999888775          5999999999999999999999999999864

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.86  E-value=1.1e-08  Score=63.01  Aligned_cols=84  Identities=11%  Similarity=0.246  Sum_probs=69.7

Q ss_pred             CCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHH
Q psy3020          28 PNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLK  106 (150)
Q Consensus        28 p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  106 (150)
                      |+.+.++..+|.+ ...|        ++.+|+  ..+.+.+..+|++                            +..+.
T Consensus         1 ~~~~~~~~~l~~~~~~~~--------~~~~A~--~~~~~a~~~~~~~----------------------------~~~~~   42 (131)
T 1elr_A            1 GKQALKEKELGNDAYKKK--------DFDTAL--KHYDKAKELDPTN----------------------------MTYIT   42 (131)
T ss_dssp             CHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC----------------------------HHHHH
T ss_pred             ChHHHHHHHHHHHHHHhc--------CHHHHH--HHHHHHHhcCCcc----------------------------HHHHH
Confidence            4456788888888 8888        667777  6666666666642                            67789


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhhcCCC-------cchhhcHHHHHHhc
Q psy3020         107 DKGNAALQANNFKEAIEAYSEAIKLDGTN-------HILFSNRSAAFAKA  149 (150)
Q Consensus       107 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~-------~~~~~n~a~~~~~~  149 (150)
                      .+|.++...|++++|+.+|.+++.++|++       +.+++++|.+|..+
T Consensus        43 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~   92 (131)
T 1elr_A           43 NQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKE   92 (131)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999988       88999999998765

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.85  E-value=1.9e-08  Score=74.23  Aligned_cols=84  Identities=10%  Similarity=0.190  Sum_probs=71.6

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      ++|.||..+|+|++|+.+|++||+++|+++.++..+|.+ ..+|        ++.+|+  ..+.+++.++|++       
T Consensus       278 nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g--------~~~eA~--~~l~~Al~l~P~~-------  340 (370)
T 1ihg_A          278 NIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLK--------EYDQAL--ADLKKAQEIAPED-------  340 (370)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC-------
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHcc--------CHHHHH--HHHHHHHHhCCCC-------
Confidence            589999999999999999999999999999999999999 9999        778888  8888888888864       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHH
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIE  123 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~  123 (150)
                                           ...+..++.++...++++++.+
T Consensus       341 ---------------------~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          341 ---------------------KAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             ---------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence                                 4556667777777777766654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.82  E-value=1.3e-08  Score=64.60  Aligned_cols=101  Identities=13%  Similarity=0.144  Sum_probs=76.2

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCc------HHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNN------EQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTK   74 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~------~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~   74 (150)
                      .+|.++...|++++|+..|++++++.|..      ..++..+|.+ ..+|        ++.++.  ..+.+++...+...
T Consensus        54 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~A~--~~~~~a~~~~~~~~  123 (164)
T 3ro3_A           54 NLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ--------DYEKAI--DYHLKHLAIAQELK  123 (164)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh--------hHHHHH--HHHHHHHHHHHHcc
Confidence            57999999999999999999999986653      5577888888 8888        556666  44544443222110


Q ss_pred             CCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC
Q psy3020          75 PFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT  134 (150)
Q Consensus        75 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  134 (150)
                                      ..+      .....+..+|.++...|++++|++++.+++++.+.
T Consensus       124 ----------------~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          124 ----------------DRI------GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             ----------------CHH------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             ----------------chH------hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence                            001      12678899999999999999999999999998764

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.80  E-value=2.2e-08  Score=61.23  Aligned_cols=48  Identities=15%  Similarity=0.194  Sum_probs=46.0

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      +..|..+|.+++..|++++|+.+|.++++++|+++.+|+++|.+|..+
T Consensus        19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~   66 (115)
T 2kat_A           19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQ   66 (115)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHc
Confidence            788999999999999999999999999999999999999999999875

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.77  E-value=2.7e-08  Score=66.08  Aligned_cols=103  Identities=15%  Similarity=0.088  Sum_probs=76.6

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhcc---CCC----cHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKL---DPN----NEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRT   73 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~---~p~----~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~   73 (150)
                      .+|.++...|++++|+..|++++++   .|+    ...++..++.+ ..+|        ++.++.  ..+.+.+...+..
T Consensus        71 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g--------~~~~A~--~~~~~al~~~~~~  140 (203)
T 3gw4_A           71 QVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFG--------DLAGAR--QEYEKSLVYAQQA  140 (203)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHT--------CHHHHH--HHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhC--------CHHHHH--HHHHHHHHHHHhc
Confidence            5799999999999999999999998   443    35577888999 8888        556666  4454444322211


Q ss_pred             CCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCc
Q psy3020          74 KPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNH  136 (150)
Q Consensus        74 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~  136 (150)
                      ..                ..      .....+..+|.++...|++++|++++.+++++.....
T Consensus       141 ~~----------------~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  181 (203)
T 3gw4_A          141 DD----------------QV------AIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELE  181 (203)
T ss_dssp             TC----------------HH------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             cc----------------hH------HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence            00                00      1156788999999999999999999999999876543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.77  E-value=7.4e-08  Score=73.70  Aligned_cols=124  Identities=10%  Similarity=0.078  Sum_probs=89.7

Q ss_pred             hCCHH-------HHHHHHHHhhc-cCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCC--CCC
Q psy3020          10 LGRYK-------ESISTYEEGLK-LDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKP--FLS   78 (150)
Q Consensus        10 ~~~~~-------~A~~~~~~aL~-~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~--~~~   78 (150)
                      .|+++       +|+..|++|++ ++|++..+|..++.+ ...|        .+.++.  ..+.+++...|.+..  +..
T Consensus       292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g--------~~~~A~--~~~~~al~~~p~~~~~~~~~  361 (530)
T 2ooe_A          292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM--------KYEKVH--SIYNRLLAIEDIDPTLVYIQ  361 (530)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHSSSSCHHHHHHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC--------CHHHHH--HHHHHHhCccccCchHHHHH
Confidence            68987       99999999998 899999999999999 8888        667777  788888888887532  110


Q ss_pred             ChHHHHHHHH-----------HhcCcchhhhHHHhHHHHHHHHHH-HHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHH
Q psy3020          79 DPSYVQMIKE-----------IQKDPSLMTLEAKISLLKDKGNAA-LQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF  146 (150)
Q Consensus        79 ~~~~~~~~~~-----------l~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~  146 (150)
                      -..+....+.           +...|..      ...+...+.+. ...|++++|..+|+++++.+|+++.+|.+.+.++
T Consensus       362 ~~~~~~~~~~~~~A~~~~~~Al~~~~~~------~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~  435 (530)
T 2ooe_A          362 YMKFARRAEGIKSGRMIFKKAREDARTR------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYL  435 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCTTCC------THHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHhccCCc------hHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            0011111111           1112211      34445555553 3589999999999999999999999999999887


Q ss_pred             Hhc
Q psy3020         147 AKA  149 (150)
Q Consensus       147 ~~~  149 (150)
                      ..+
T Consensus       436 ~~~  438 (530)
T 2ooe_A          436 SHL  438 (530)
T ss_dssp             TTT
T ss_pred             HhC
Confidence            654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.73  E-value=5.8e-08  Score=70.70  Aligned_cols=116  Identities=11%  Similarity=0.021  Sum_probs=86.1

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHH-----HHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQ-----MKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKP   75 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~-----a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~   75 (150)
                      ..|.++...|++++|+..+++++...|.+..     ++..++.+ ...|        ++.++.  ..+.+++...|....
T Consensus        19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~--~~~~~al~~~~~~~~   88 (373)
T 1hz4_A           19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG--------ELTRSL--ALMQQTEQMARQHDV   88 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHT--------CHHHHH--HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcC--------cHHHHH--HHHHHHHHHHHhcCc
Confidence            3578889999999999999999999886532     56677777 7788        556666  555555544443211


Q ss_pred             CCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc--------CCCcchhhcHHHHHH
Q psy3020          76 FLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLD--------GTNHILFSNRSAAFA  147 (150)
Q Consensus        76 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~n~a~~~~  147 (150)
                      .     .                 .....+..+|.++...|++++|++.|.+++++.        |....++.++|.++.
T Consensus        89 ~-----~-----------------~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  146 (373)
T 1hz4_A           89 W-----H-----------------YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW  146 (373)
T ss_dssp             H-----H-----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH
T ss_pred             H-----H-----------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH
Confidence            0     0                 115667889999999999999999999999987        334567788998887


Q ss_pred             hc
Q psy3020         148 KA  149 (150)
Q Consensus       148 ~~  149 (150)
                      .+
T Consensus       147 ~~  148 (373)
T 1hz4_A          147 AW  148 (373)
T ss_dssp             HT
T ss_pred             Hh
Confidence            64

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.69  E-value=3.5e-07  Score=65.94  Aligned_cols=131  Identities=15%  Similarity=0.035  Sum_probs=87.8

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCC--CcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCC-----C
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDP--NNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPR-----T   73 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p--~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~-----~   73 (150)
                      .+|.++...|++++|++.+.++|..+|  ++.++...++.+ ..+|+.        ..|.  ..+.+....+|+     +
T Consensus       105 ~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~--------d~A~--k~l~~~~~~~~d~~~~~d  174 (310)
T 3mv2_B          105 LLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNV--------STAS--TIFDNYTNAIEDTVSGDN  174 (310)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCH--------HHHH--HHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCH--------HHHH--HHHHHHHhcCccccccch
Confidence            478999999999999999999999998  899999999999 888944        4444  444444455551     2


Q ss_pred             CCCC-----------C--C-hHHHHHHHHHh-cCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-------
Q psy3020          74 KPFL-----------S--D-PSYVQMIKEIQ-KDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKL-------  131 (150)
Q Consensus        74 ~~~~-----------~--~-~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-------  131 (150)
                      ....           .  + ......++.+. +.|+.    .....+.+   ++.++|++++|.+.++.+++.       
T Consensus       175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~----~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k  247 (310)
T 3mv2_B          175 EMILNLAESYIKFATNKETATSNFYYYEELSQTFPTW----KTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQK  247 (310)
T ss_dssp             HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSH----HHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCc----ccHHHHHH---HHHHcCCHHHHHHHHHHHHHhccccccc
Confidence            1110           0  0 01111122221 22210    00222222   788999999999999988887       


Q ss_pred             ---cCCCcchhhcHHHHHHhc
Q psy3020         132 ---DGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       132 ---~p~~~~~~~n~a~~~~~~  149 (150)
                         +|+++.++.|++.+...+
T Consensus       248 ~~~~p~~~~~LaN~i~l~~~l  268 (310)
T 3mv2_B          248 ENAVLYKPTFLANQITLALMQ  268 (310)
T ss_dssp             HHHHSSHHHHHHHHHHHHHHT
T ss_pred             ccCCCCCHHHHHHHHHHHHHh
Confidence               599999999998776543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.68  E-value=1.9e-07  Score=55.25  Aligned_cols=67  Identities=22%  Similarity=0.227  Sum_probs=53.5

Q ss_pred             HHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhH-HHHHHHHHHH
Q psy3020          36 AIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKIS-LLKDKGNAAL  113 (150)
Q Consensus        36 ~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~g~~~~  113 (150)
                      .+|.+ ...|        ++.+|+  ..+.+++..+|++                            +. .|..+|.+++
T Consensus         5 ~~a~~~~~~~--------~~~~A~--~~~~~al~~~p~~----------------------------~~~~~~~lg~~~~   46 (99)
T 2kc7_A            5 KTIKELINQG--------DIENAL--QALEEFLQTEPVG----------------------------KDEAYYLMGNAYR   46 (99)
T ss_dssp             HHHHHHHHHT--------CHHHHH--HHHHHHHHHCSST----------------------------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHcC--------CHHHHH--HHHHHHHHHCCCc----------------------------HHHHHHHHHHHHH
Confidence            34555 5666        566666  6666666666643                            66 8999999999


Q ss_pred             HhcCHHHHHHHHHHHHhhcCCCcchhh
Q psy3020         114 QANNFKEAIEAYSEAIKLDGTNHILFS  140 (150)
Q Consensus       114 ~~~~~~~A~~~~~~al~~~p~~~~~~~  140 (150)
                      ..|++++|+++|.++++++|+++.++.
T Consensus        47 ~~~~~~~A~~~~~~al~~~p~~~~~~~   73 (99)
T 2kc7_A           47 KLGDWQKALNNYQSAIELNPDSPALQA   73 (99)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence            999999999999999999999998883

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.67  E-value=2.4e-07  Score=59.98  Aligned_cols=101  Identities=5%  Similarity=-0.046  Sum_probs=74.7

Q ss_pred             CCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHH
Q psy3020          11 GRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEI   89 (150)
Q Consensus        11 ~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l   89 (150)
                      +....+.+.|.+.++.+|.+.++.+.++-+ ..++...     ++.+++  .-+...++.+                   
T Consensus        12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~-----~~~~gI--~lLe~ll~~~-------------------   65 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYND-----DIRKGI--VLLEELLPKG-------------------   65 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHH-----HHHHHH--HHHHHHHHHS-------------------
T ss_pred             HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHH-----HHHHHH--HHHHHHHhcC-------------------
Confidence            345678899999999999999999999887 5555322     344444  3333333333                   


Q ss_pred             hcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHH
Q psy3020          90 QKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSA  144 (150)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~  144 (150)
                        .|+     .+.+.++++|..+++.|+|++|.++++++|+++|+|..+..-+-.
T Consensus        66 --~p~-----~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~  113 (152)
T 1pc2_A           66 --SKE-----EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERL  113 (152)
T ss_dssp             --CHH-----HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             --Ccc-----chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence              010     227889999999999999999999999999999999887665443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.67  E-value=4.6e-08  Score=58.85  Aligned_cols=55  Identities=16%  Similarity=0.180  Sum_probs=43.8

Q ss_pred             HhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCC------cchhhcHHHHHHhc
Q psy3020          89 IQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTN------HILFSNRSAAFAKA  149 (150)
Q Consensus        89 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~n~a~~~~~~  149 (150)
                      +..+|..      +..|..+|.+++..|++++|+++|+++++++|++      ..+++++|.++..+
T Consensus        31 l~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~   91 (111)
T 2l6j_A           31 ITAQPQN------PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAV   91 (111)
T ss_dssp             HHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHH
Confidence            4455555      7888888888888888888888888888888888      77888888887654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.67  E-value=2.7e-07  Score=65.73  Aligned_cols=103  Identities=9%  Similarity=-0.104  Sum_probs=79.9

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccC-CCc-HHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLD-PNN-EQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS   78 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~-p~~-~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~   78 (150)
                      .+|.++.+.++|++|+..|+++++.. |.. ..++..+|.+ ..+|        .+.+|+  .-+.+++... .      
T Consensus       140 ~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG--------~~~eAl--~~l~~a~~g~-~------  202 (282)
T 4f3v_A          140 MKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLA--------LFTEAE--RRLTEANDSP-A------  202 (282)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHTST-T------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCC--------CHHHHH--HHHHHHhcCC-C------
Confidence            47889999999999999999998864 322 3588999999 9999        667777  5555444221 1      


Q ss_pred             ChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhh
Q psy3020          79 DPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFS  140 (150)
Q Consensus        79 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  140 (150)
                                   +|..     .+.++..+|.++.++|+.++|...|++++..+|+ +.++.
T Consensus       203 -------------~P~~-----~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~  245 (282)
T 4f3v_A          203 -------------GEAC-----ARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAA  245 (282)
T ss_dssp             -------------TTTT-----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHH
T ss_pred             -------------Cccc-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHH
Confidence                         0110     1678999999999999999999999999999998 66544

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.66  E-value=2.8e-07  Score=69.57  Aligned_cols=127  Identities=9%  Similarity=-0.009  Sum_probs=87.8

Q ss_pred             hhhHHHHhhC---CHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hh-hhhccCCCCCchhhhhCChHHHHhhccCCCCCCC
Q psy3020           2 TTYSCLSYLG---RYKESISTYEEGLKLDPNNEQMKEAIKDV-RN-QEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF   76 (150)
Q Consensus         2 ~lg~~~~~~~---~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~-~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~   76 (150)
                      .+|.+|...|   ++++|++.|+++.+..|.++.++..++.+ .. .+-.+     ++.+++  .-+.++.   |++...
T Consensus       181 ~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~-----d~~~A~--~~~~~aa---~g~~~a  250 (452)
T 3e4b_A          181 ELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTP-----DEKTAQ--ALLEKIA---PGYPAS  250 (452)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSC-----CHHHHH--HHHHHHG---GGSTHH
T ss_pred             HHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCC-----CHHHHH--HHHHHHc---CCCHHH
Confidence            5788899999   99999999999999999999988888888 33 22212     666776  5555444   544432


Q ss_pred             CCChHHHHHHHHH-h--cCcchhhh----------HHHhHHHHHHHHHHHHhc-----CHHHHHHHHHHHHhhcCCCcch
Q psy3020          77 LSDPSYVQMIKEI-Q--KDPSLMTL----------EAKISLLKDKGNAALQAN-----NFKEAIEAYSEAIKLDGTNHIL  138 (150)
Q Consensus        77 ~~~~~~~~~~~~l-~--~~~~~~~~----------~~~~~~~~~~g~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~  138 (150)
                      .      ..+..+ .  .......+          ...+.++..+|.++. .|     ++++|+++|++++   |.++.+
T Consensus       251 ~------~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A  320 (452)
T 3e4b_A          251 W------VSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAA  320 (452)
T ss_dssp             H------HHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHH
T ss_pred             H------HHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHH
Confidence            1      011100 0  00111111          011788899998887 55     9999999999999   999999


Q ss_pred             hhcHHHHHHh
Q psy3020         139 FSNRSAAFAK  148 (150)
Q Consensus       139 ~~n~a~~~~~  148 (150)
                      ++++|.+|..
T Consensus       321 ~~~Lg~~y~~  330 (452)
T 3e4b_A          321 DYYLGQIYRR  330 (452)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHC
Confidence            9999998864

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.65  E-value=2.2e-07  Score=68.35  Aligned_cols=124  Identities=13%  Similarity=-0.003  Sum_probs=73.1

Q ss_pred             hHHHHhhC---CHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCC-----chhhhhCChHHHHhhccCCCCC
Q psy3020           4 YSCLSYLG---RYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGD-----PFANLFSDPNIFVQLQLDPRTK   74 (150)
Q Consensus         4 g~~~~~~~---~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~-----~~~~a~~~~~~~~~l~~~~~~~   74 (150)
                      |..+...+   .+.+|+.+|++|+++||+++.++-.++.+ ......  .++.     ....++  . ....+..+|...
T Consensus       203 a~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~--~~~~~~~~~~l~~a~--~-a~~a~~~~~~~a  277 (372)
T 3ly7_A          203 AHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQ--HPLDEKQLAALNTEI--D-NIVTLPELNNLS  277 (372)
T ss_dssp             HHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHH--H-HHHTCGGGTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhcc--CCCchhhHHHHHHHH--H-HHHhcccCCcCH
Confidence            44444443   35789999999999999999999877666 322111  1111     111122  1 112334455444


Q ss_pred             CCCCC--------hHHHHHH----HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchh
Q psy3020          75 PFLSD--------PSYVQMI----KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILF  139 (150)
Q Consensus        75 ~~~~~--------~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  139 (150)
                      ..+..        ..+...+    +.+..+|       .+.+|..+|.++...|++++|++.|.+|+.++|..+..+
T Consensus       278 ~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-------s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~  347 (372)
T 3ly7_A          278 IIYQIKAVSALVKGKTDESYQAINTGIDLEM-------SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY  347 (372)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence            32100        0011111    1122222       156778899999999999999999999999999876443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.63  E-value=2.1e-07  Score=70.25  Aligned_cols=127  Identities=8%  Similarity=-0.064  Sum_probs=83.9

Q ss_pred             hhhHHHHhh----CCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC
Q psy3020           2 TTYSCLSYL----GRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF   76 (150)
Q Consensus         2 ~lg~~~~~~----~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~   76 (150)
                      .+|.+|...    +++++|+..|+++.   |+++.++..++.+ .......     ++.+++  .-+.++....  +...
T Consensus       218 ~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~-----d~~~A~--~~~~~Aa~~g--~~~A  285 (452)
T 3e4b_A          218 SVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELG-----DVEQMM--KYLDNGRAAD--QPRA  285 (452)
T ss_dssp             HHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGC-----CHHHHH--HHHHHHHHTT--CHHH
T ss_pred             HHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCC-----CHHHHH--HHHHHHHHCC--CHHH
Confidence            477777666    79999999999998   8999999999887 4211122     566666  5555544322  2111


Q ss_pred             CC------------ChHHHHHHHHHhcC-cchhhhHHHhHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhcCCCcchh
Q psy3020          77 LS------------DPSYVQMIKEIQKD-PSLMTLEAKISLLKDKGNAALQ----ANNFKEAIEAYSEAIKLDGTNHILF  139 (150)
Q Consensus        77 ~~------------~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~  139 (150)
                      ..            ...+...+.-+.+. +..      +.++.++|.++..    ..++++|++.|+++.+  +.++.+.
T Consensus       286 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~g~------~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~  357 (452)
T 3e4b_A          286 ELLLGKLYYEGKWVPADAKAAEAHFEKAVGRE------VAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSAD  357 (452)
T ss_dssp             HHHHHHHHHHCSSSCCCHHHHHHHHHTTTTTC------HHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHhCCC------HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHH
Confidence            00            00112222222211 222      7899999988876    4499999999999987  5679999


Q ss_pred             hcHHHHHHh
Q psy3020         140 SNRSAAFAK  148 (150)
Q Consensus       140 ~n~a~~~~~  148 (150)
                      +++|.+|..
T Consensus       358 ~~Lg~~y~~  366 (452)
T 3e4b_A          358 FAIAQLFSQ  366 (452)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHHh
Confidence            999999864

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.62  E-value=1.5e-07  Score=69.62  Aligned_cols=137  Identities=12%  Similarity=0.028  Sum_probs=79.6

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHH-----------------HHHHHHHH-HhhhhccCCCCCchhhhhCChHHH
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQ-----------------MKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIF   64 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~-----------------a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~   64 (150)
                      -|..+...|+|++|++.|.++++.+|+...                 +...++.+ ...|+        +.++.  ..+.
T Consensus        10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~--------~~~a~--~~~~   79 (434)
T 4b4t_Q           10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA--------KDKLR--EFIP   79 (434)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC--------HHHHH--HHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC--------HHHHH--HHHH
Confidence            367788999999999999999999998643                 46788888 88884        44444  3443


Q ss_pred             HhhccCCCCCCCCCChHHHHHHHHHhcCcchhhh------------------HHHhHHHHHHHHHHHHhcCHHHHHHHHH
Q psy3020          65 VQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTL------------------EAKISLLKDKGNAALQANNFKEAIEAYS  126 (150)
Q Consensus        65 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------~~~~~~~~~~g~~~~~~~~~~~A~~~~~  126 (150)
                      ..+...+..........+...+..+...+.....                  ......+..+|.++...|+|++|+..+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~  159 (434)
T 4b4t_Q           80 HSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIN  159 (434)
T ss_dssp             HTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHH
Confidence            3333333221100000011111111111111111                  0115566777888888888888888888


Q ss_pred             HHHhhc------CCCcchhhcHHHHHHhc
Q psy3020         127 EAIKLD------GTNHILFSNRSAAFAKA  149 (150)
Q Consensus       127 ~al~~~------p~~~~~~~n~a~~~~~~  149 (150)
                      +++...      |....++.+.|.+|..+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (434)
T 4b4t_Q          160 DLLREFKKLDDKPSLVDVHLLESKVYHKL  188 (434)
T ss_dssp             HHHHHHTTSSCSTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcccchhHHHHHHHHHHHHHHh
Confidence            777652      33345667777766543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.61  E-value=6.3e-07  Score=67.87  Aligned_cols=45  Identities=16%  Similarity=0.008  Sum_probs=36.0

Q ss_pred             hHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020         102 ISLLKDKGNAALQ----ANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus       102 ~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                      +.++..+|.++..    .+++++|+++|+++++..  ++.+++++|.+|..
T Consensus       363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~  411 (490)
T 2xm6_A          363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYY  411 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHc
Confidence            6778888888887    788888888888888754  57888888888765

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.60  E-value=3.8e-07  Score=66.33  Aligned_cols=58  Identities=10%  Similarity=0.063  Sum_probs=43.2

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcH------HHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhcc
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNE------QMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQL   69 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~------~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~   69 (150)
                      .+|.++...|++++|+..|++++++.|...      .++..++.+ ...|        ++.++.  ..+.+.+..
T Consensus        58 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G--------~~~~A~--~~~~~al~~  122 (373)
T 1hz4_A           58 VLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQG--------FLQTAW--ETQEKAFQL  122 (373)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCC--------CHHHHH--HHHHHHHHH
Confidence            478899999999999999999999876432      235677888 8888        556666  555555443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.56  E-value=1.1e-06  Score=66.52  Aligned_cols=130  Identities=9%  Similarity=0.004  Sum_probs=85.0

Q ss_pred             hhhHHHHh----hCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hh-hhhccCCCCCchhhhhCChHHHHhhccCCCCCC
Q psy3020           2 TTYSCLSY----LGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RN-QEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKP   75 (150)
Q Consensus         2 ~lg~~~~~----~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~-~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~   75 (150)
                      .+|.+|..    .+++++|+..|+++++.  +++.++..+|.+ .. .|-..     ++.+|+  .-+.++....  +..
T Consensus        44 ~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~-----~~~~A~--~~~~~a~~~~--~~~  112 (490)
T 2xm6_A           44 ELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQ-----DYAQAV--IWYKKAALKG--LPQ  112 (490)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCC-----CHHHHH--HHHHHHHHTT--CHH
T ss_pred             HHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCC-----CHHHHH--HHHHHHHHCC--CHH
Confidence            47888888    89999999999999876  788999999988 44 22111     556666  5555544322  111


Q ss_pred             CC--------C----ChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhcCCCcchh
Q psy3020          76 FL--------S----DPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQ----ANNFKEAIEAYSEAIKLDGTNHILF  139 (150)
Q Consensus        76 ~~--------~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~  139 (150)
                      ..        .    ...+...+.-+.+...    ...+.++..+|.++..    .+++++|++.|+++++.  +++.++
T Consensus       113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~----~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~  186 (490)
T 2xm6_A          113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAE----QGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSC  186 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHH
Confidence            00        0    0001111111100000    0117788999999987    88999999999999886  578999


Q ss_pred             hcHHHHHHh
Q psy3020         140 SNRSAAFAK  148 (150)
Q Consensus       140 ~n~a~~~~~  148 (150)
                      +++|.+|..
T Consensus       187 ~~Lg~~y~~  195 (490)
T 2xm6_A          187 NQLGYMYSR  195 (490)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            999999875

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=98.49  E-value=1.4e-06  Score=65.70  Aligned_cols=44  Identities=20%  Similarity=0.280  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020         105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus       105 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                      ...+...+.+.|.+++|+..+++++.++|-+...|..+|++|.+
T Consensus       210 l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k  253 (449)
T 1b89_A          210 LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK  253 (449)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence            44577788899999999999999999999999999999999875

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.48  E-value=1.8e-06  Score=54.80  Aligned_cols=99  Identities=11%  Similarity=-0.000  Sum_probs=60.8

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hh-hhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RN-QEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~-~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      +|.+|...+.+++|++.|++|.+.  +++.+...++.+ .. .|-.+     ++.+++  .-+.++...           
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~-----d~~~A~--~~~~~Aa~~-----------   90 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKK-----DLRKAA--QYYSKACGL-----------   90 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCC-----CHHHHH--HHHHHHHHT-----------
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCc-----cHHHHH--HHHHHHHcC-----------
Confidence            566677777777777777777765  567777777766 22 22111     444444  222222211           


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhcCCCcchhhcH
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQ----ANNFKEAIEAYSEAIKLDGTNHILFSNR  142 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~n~  142 (150)
                                 ..        +.++.++|.++..    .+++++|++.|+++.+...  +.+..++
T Consensus        91 -----------g~--------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~--~~A~~~l  135 (138)
T 1klx_A           91 -----------ND--------QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS--EDACGIL  135 (138)
T ss_dssp             -----------TC--------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHC
T ss_pred             -----------CC--------HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHH
Confidence                       11        6778888888887    7888888888888888743  4444443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.46  E-value=6.4e-07  Score=68.51  Aligned_cols=113  Identities=12%  Similarity=0.029  Sum_probs=79.0

Q ss_pred             HHHHhhCCHHHHHHHHHHhhcc-----CCCcHH---HHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCC
Q psy3020           5 SCLSYLGRYKESISTYEEGLKL-----DPNNEQ---MKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKP   75 (150)
Q Consensus         5 ~~~~~~~~~~~A~~~~~~aL~~-----~p~~~~---a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~   75 (150)
                      ..+...|+|++|+..|+++|++     .|+++.   .+..|+.+ ..+|        ++.+|.  ..+.+++.+.-    
T Consensus       317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g--------~~~eA~--~~~~~aL~i~~----  382 (490)
T 3n71_A          317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQ--------AYEEAS--HYARRMVDGYM----  382 (490)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHHH----
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc--------CHHHHH--HHHHHHHHHHH----
Confidence            4467899999999999999984     455554   56777888 8888        566666  44444432110    


Q ss_pred             CCCChHHHHHHHHHh-cCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-----cCCCc---chhhcHHHHH
Q psy3020          76 FLSDPSYVQMIKEIQ-KDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKL-----DGTNH---ILFSNRSAAF  146 (150)
Q Consensus        76 ~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~n~a~~~  146 (150)
                                 ..+. ..|+-      ...+.++|.++..+|+|++|+..|.+|+++     -|++|   ....+++.++
T Consensus       383 -----------~~lG~~Hp~~------a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~  445 (490)
T 3n71_A          383 -----------KLYHHNNAQL------GMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTE  445 (490)
T ss_dssp             -----------HHSCTTCHHH------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred             -----------HHcCCCCHHH------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence                       0011 11211      788999999999999999999999999974     46654   4456777776


Q ss_pred             Hh
Q psy3020         147 AK  148 (150)
Q Consensus       147 ~~  148 (150)
                      .+
T Consensus       446 ~e  447 (490)
T 3n71_A          446 ME  447 (490)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.39  E-value=3.3e-06  Score=71.28  Aligned_cols=56  Identities=11%  Similarity=0.115  Sum_probs=45.3

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPR   72 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~   72 (150)
                      .+|.++...|++++|+++|.+|     +++.++..++.+ ...|        ++++++  .-+..+....++
T Consensus      1110 qLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lG--------kyEEAI--eyL~mArk~~~e 1166 (1630)
T 1xi4_A         1110 QLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSG--------NWEELV--KYLQMARKKARE 1166 (1630)
T ss_pred             HHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHhhccc
Confidence            5799999999999999999886     889999999999 9999        666666  566555555543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.38  E-value=3.3e-06  Score=53.53  Aligned_cols=92  Identities=16%  Similarity=0.072  Sum_probs=68.7

Q ss_pred             CCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHH
Q psy3020          11 GRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEI   89 (150)
Q Consensus        11 ~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l   89 (150)
                      +++++|++.|+++.+..+..+.    ++.+ ...+        ...+++  .-+.++...                    
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~--------~~~~A~--~~~~~Aa~~--------------------   54 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQI--------NKQKLF--QYLSKACEL--------------------   54 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTS--------CHHHHH--HHHHHHHHT--------------------
T ss_pred             cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCC--------CHHHHH--HHHHHHHcC--------------------
Confidence            5789999999999998754444    7777 4333        223344  333222221                    


Q ss_pred             hcCcchhhhHHHhHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          90 QKDPSLMTLEAKISLLKDKGNAALQ----ANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                        +.        +.++.++|.++..    .+++++|++.|+++.+.  .++.+++++|.+|..
T Consensus        55 --g~--------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           55 --NS--------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  105 (138)
T ss_dssp             --TC--------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             --CC--------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence              11        7889999999998    89999999999999987  679999999999975

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.35  E-value=1.6e-06  Score=65.39  Aligned_cols=99  Identities=12%  Similarity=0.031  Sum_probs=70.0

Q ss_pred             HhhCCHHHHHHHHHHhhc-----cCCCcHH---HHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCC
Q psy3020           8 SYLGRYKESISTYEEGLK-----LDPNNEQ---MKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS   78 (150)
Q Consensus         8 ~~~~~~~~A~~~~~~aL~-----~~p~~~~---a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~   78 (150)
                      ...|+|++|+..|+++|+     +.|+++.   .+..++.+ ..+|        ++.+|.  +.+.+.+.+.-       
T Consensus       309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g--------~~~eA~--~~~~~aL~i~~-------  371 (433)
T 3qww_A          309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQ--------DWEGAL--KYGQKIIKPYS-------  371 (433)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHHH-------
T ss_pred             hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhc--------CHHHHH--HHHHHHHHHHH-------
Confidence            356899999999999998     4677765   45677888 8888        566666  44444432110       


Q ss_pred             ChHHHHHHHHHh-cCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-----cCCCcc
Q psy3020          79 DPSYVQMIKEIQ-KDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKL-----DGTNHI  137 (150)
Q Consensus        79 ~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~  137 (150)
                              ..+. ..|+-      +..+.++|.++..+|+|++|+..|++|+++     -|++|.
T Consensus       372 --------~~lG~~Hp~~------a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~  422 (433)
T 3qww_A          372 --------KHYPVYSLNV------ASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY  422 (433)
T ss_dssp             --------HHSCSSCHHH------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred             --------HHcCCCChHH------HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence                    0011 11211      788999999999999999999999999985     465553

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.34  E-value=4.1e-06  Score=50.56  Aligned_cols=42  Identities=19%  Similarity=0.202  Sum_probs=40.2

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHH
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRS  143 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a  143 (150)
                      +..+..+|.++++.|+++.|+..++++++++|+++.+..|++
T Consensus        46 ~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A           46 VSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            788999999999999999999999999999999999988887

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.29  E-value=2.3e-06  Score=50.84  Aligned_cols=61  Identities=21%  Similarity=0.219  Sum_probs=53.6

Q ss_pred             hhhHHHHhhCC---HHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCC
Q psy3020           2 TTYSCLSYLGR---YKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPR   72 (150)
Q Consensus         2 ~lg~~~~~~~~---~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~   72 (150)
                      .+|.+++..++   .++|...+++||++||+++.+...+|.. ...|        ++.+|+  ..+.+.+..+|.
T Consensus        11 ~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g--------~y~~Ai--~~w~~~l~~~p~   75 (93)
T 3bee_A           11 AKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISF--------RFQEAI--DTWVLLLDSNDP   75 (93)
T ss_dssp             HHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHTCCCT
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHhhCCC
Confidence            35777765555   7999999999999999999999999999 9999        778888  888888998988

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.28  E-value=3.6e-06  Score=63.35  Aligned_cols=113  Identities=11%  Similarity=-0.001  Sum_probs=78.4

Q ss_pred             HHHhhCCHHHHHHHHHHhhcc-----CCCcHH---HHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC
Q psy3020           6 CLSYLGRYKESISTYEEGLKL-----DPNNEQ---MKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF   76 (150)
Q Consensus         6 ~~~~~~~~~~A~~~~~~aL~~-----~p~~~~---a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~   76 (150)
                      -+...|+|++|+..|+++|++     .|+++.   .+..++.+ ..+|        ++.+|+  ..+.+.+.+.-.    
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g--------~~~eA~--~~~~~~L~i~~~----  361 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLG--------LLEEAL--FYGTRTMEPYRI----  361 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHT--------CHHHHH--HHHHHHHHHHHH----
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhc--------cHHHHH--HHHHHHHHhHHH----
Confidence            355789999999999999974     566665   45677777 7888        556666  444433321100    


Q ss_pred             CCChHHHHHHHHHh-cCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhh-----cCCCc---chhhcHHHHHH
Q psy3020          77 LSDPSYVQMIKEIQ-KDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKL-----DGTNH---ILFSNRSAAFA  147 (150)
Q Consensus        77 ~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~---~~~~n~a~~~~  147 (150)
                                 .+. ..|.-      ...+.++|.++..+|++++|+..|++|+++     -|++|   .++.+++.|..
T Consensus       362 -----------~lg~~Hp~~------a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~  424 (429)
T 3qwp_A          362 -----------FFPGSHPVR------GVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA  424 (429)
T ss_dssp             -----------HSCSSCHHH------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred             -----------HcCCCChHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence                       000 11211      788999999999999999999999999984     45554   55577777766


Q ss_pred             hc
Q psy3020         148 KA  149 (150)
Q Consensus       148 ~~  149 (150)
                      ++
T Consensus       425 e~  426 (429)
T 3qwp_A          425 NI  426 (429)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.21  E-value=1.2e-05  Score=67.97  Aligned_cols=118  Identities=12%  Similarity=0.051  Sum_probs=83.2

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCC-----
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKP-----   75 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~-----   75 (150)
                      .+|.+++..|+|++|+..|.+|        ..|..++.+ ..+|        ++.+|+  ..+.++.  ++....     
T Consensus      1200 ~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLg--------e~q~AI--EaarKA~--n~~aWkev~~a 1259 (1630)
T 1xi4_A         1200 QVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLG--------EYQAAV--DGARKAN--STRTWKEVCFA 1259 (1630)
T ss_pred             HHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhC--------CHHHHH--HHHHHhC--CHHHHHHHHHH
Confidence            4799999999999999999996        477788888 7888        555665  4444332  221110     


Q ss_pred             CCCChHHHHHHH---HHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          76 FLSDPSYVQMIK---EIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        76 ~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                      ......|..+..   .+...         ++.+..++..+...|.|++|+..+++++.++|.+...|..+|.+|.+
T Consensus      1260 cve~~Ef~LA~~cgl~Iiv~---------~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A         1260 CVDGKEFRLAQMCGLHIVVH---------ADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 1326 (1630)
T ss_pred             HhhhhHHHHHHHHHHhhhcC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHh
Confidence            011111111110   12122         55677888899999999999999999999999999999999999875

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.18  E-value=3.6e-06  Score=62.12  Aligned_cols=124  Identities=8%  Similarity=0.012  Sum_probs=75.0

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHH------HHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQM------KEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTK   74 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a------~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~   74 (150)
                      .+|.+|...|++++|++.|++++++.+....+      ...++.+ ...|        .+..+.  ..+..++...+...
T Consensus        60 ~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~--~~~~~~~~~~~~~~  129 (434)
T 4b4t_Q           60 ELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPD--------SLDDQI--FVCEKSIEFAKREK  129 (434)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCS--------CHHHHH--HHHHHHHHHHHHSS
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCC--------CHHHHH--HHHHHHHHHHHHhC
Confidence            48999999999999999999999987765443      2334444 4444        344444  33333333222211


Q ss_pred             CCCC--------------ChHHHHHHH-------HHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q psy3020          75 PFLS--------------DPSYVQMIK-------EIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDG  133 (150)
Q Consensus        75 ~~~~--------------~~~~~~~~~-------~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p  133 (150)
                      ....              .+.+..++.       ......+.   +.....+...|.++...|+|++|...|++++.+.|
T Consensus       130 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  206 (434)
T 4b4t_Q          130 RVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK---PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN  206 (434)
T ss_dssp             CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS---THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc---hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence            1000              001111111       11111100   13378999999999999999999999999999877


Q ss_pred             CCcch
Q psy3020         134 TNHIL  138 (150)
Q Consensus       134 ~~~~~  138 (150)
                      .....
T Consensus       207 ~~~~~  211 (434)
T 4b4t_Q          207 SIYCP  211 (434)
T ss_dssp             HSCCC
T ss_pred             cCCCc
Confidence            65433

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.12  E-value=7e-06  Score=49.51  Aligned_cols=65  Identities=12%  Similarity=0.019  Sum_probs=56.7

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccC-------CCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLD-------PNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRT   73 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~-------p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~   73 (150)
                      .||..++..++|+.|+..|++|++..       +..+.++..++.+ ..+|        ++..|+  ..+.+++.++|++
T Consensus        10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g--------~~~~A~--~~~~~al~l~P~~   79 (104)
T 2v5f_A           10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG--------DLDKAL--LLTKKLLELDPEH   79 (104)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC
T ss_pred             HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHcc--------CHHHHH--HHHHHHHhcCCCC
Confidence            58999999999999999999999963       4678899999999 9999        778888  8888899999987


Q ss_pred             CCC
Q psy3020          74 KPF   76 (150)
Q Consensus        74 ~~~   76 (150)
                      ...
T Consensus        80 ~~~   82 (104)
T 2v5f_A           80 QRA   82 (104)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            553

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.04  E-value=1e-05  Score=57.71  Aligned_cols=88  Identities=11%  Similarity=0.031  Sum_probs=72.0

Q ss_pred             CCHHHHHHHHHHhhccCCC--cHHHHHHHHHH-Hhh-----hhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHH
Q psy3020          11 GRYKESISTYEEGLKLDPN--NEQMKEAIKDV-RNQ-----EMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSY   82 (150)
Q Consensus        11 ~~~~~A~~~~~~aL~~~p~--~~~a~~~l~~~-~~~-----g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~   82 (150)
                      +..+.|...+++|+++||+  +..+|..+|.+ ...     |        +.++|.  ..+.+++.++|+..        
T Consensus       177 ~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gG--------d~ekA~--~~ferAL~LnP~~~--------  238 (301)
T 3u64_A          177 DTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGG--------GMEKAH--TAFEHLTRYCSAHD--------  238 (301)
T ss_dssp             HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTC--------CHHHHH--HHHHHHHHHCCTTC--------
T ss_pred             HhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCC--------CHHHHH--HHHHHHHHhCCCCC--------
Confidence            3457899999999999999  67799999988 553     4        566777  78888999998521        


Q ss_pred             HHHHHHHhcCcchhhhHHHhHHHHHHHHHHHH-hcCHHHHHHHHHHHHhhcCCC
Q psy3020          83 VQMIKEIQKDPSLMTLEAKISLLKDKGNAALQ-ANNFKEAIEAYSEAIKLDGTN  135 (150)
Q Consensus        83 ~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~  135 (150)
                                         ...+...|..+.. .|++++|.+.+++++..+|..
T Consensus       239 -------------------id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          239 -------------------PDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             -------------------SHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             -------------------chHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence                               4567778888876 599999999999999999985

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.01  E-value=7.2e-05  Score=46.77  Aligned_cols=103  Identities=5%  Similarity=-0.046  Sum_probs=70.2

Q ss_pred             hCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHH
Q psy3020          10 LGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKE   88 (150)
Q Consensus        10 ~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   88 (150)
                      ......+.+.|.+.+..++.+..+.+.+|-+ .......     +..+.+  .-+...++.+                  
T Consensus        14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~-----d~~~GI--~lLe~l~~~~------------------   68 (126)
T 1nzn_A           14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYND-----DIRKGI--VLLEELLPKG------------------   68 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHH-----HHHHHH--HHHHHHTTTS------------------
T ss_pred             HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHH-----HHHHHH--HHHHHHHhcC------------------
Confidence            3445677888999988888888888888776 4444221     223333  2222222211                  


Q ss_pred             HhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHH
Q psy3020          89 IQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAA  145 (150)
Q Consensus        89 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~  145 (150)
                         .|.     .+-+.++.++..+++.|+|+.|.+++..+|+++|+|..+...+..+
T Consensus        69 ---~p~-----~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A           69 ---SKE-----EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI  117 (126)
T ss_dssp             ---CHH-----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ---Ccc-----hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence               010     2267889999999999999999999999999999998876654443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.99  E-value=1.7e-05  Score=59.78  Aligned_cols=113  Identities=11%  Similarity=0.087  Sum_probs=83.2

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH---HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCC
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV---RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD   79 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~---~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~   79 (150)
                      +..+|.+.|++++|+..++++|.++|.+..+++.++.+   +..+        ++.+.+  ..+..++++.|        
T Consensus       213 lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~--------k~~ehl--~~~~~~ini~k--------  274 (449)
T 1b89_A          213 LINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQ--------KMREHL--ELFWSRVNIPK--------  274 (449)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHH--------HHHHHH--HHHSTTSCHHH--------
T ss_pred             HHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHH--------HHHHHH--HHHHHHhcCcH--------
Confidence            45789999999999999999999999999999999776   3444        444444  44444433332        


Q ss_pred             hHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhh------------cCCCcchhhcHHHHHH
Q psy3020          80 PSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKL------------DGTNHILFSNRSAAFA  147 (150)
Q Consensus        80 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------------~p~~~~~~~n~a~~~~  147 (150)
                        +.+.   -          .++..|..+.-++..-++|+.|+...-+....            .+.|..+|+.....|+
T Consensus       275 --~~~~---~----------~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl  339 (449)
T 1b89_A          275 --VLRA---A----------EQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL  339 (449)
T ss_dssp             --HHHH---H----------HTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH
T ss_pred             --HHHH---H----------HHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH
Confidence              1111   1          22678999999999999999999987777655            7888888886666665


Q ss_pred             h
Q psy3020         148 K  148 (150)
Q Consensus       148 ~  148 (150)
                      .
T Consensus       340 ~  340 (449)
T 1b89_A          340 E  340 (449)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.91  E-value=4.1e-05  Score=58.56  Aligned_cols=101  Identities=15%  Similarity=0.035  Sum_probs=71.6

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhcc-----CCCcHH---HHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKL-----DPNNEQ---MKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPR   72 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~-----~p~~~~---a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~   72 (150)
                      +||.+|..+|+|++|+..|+++|++     -|+++.   .+..||.+ ..+|        .+.+|.  +.+.+++.+.- 
T Consensus       356 nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G--------~~~eA~--~~~~~Al~i~~-  424 (490)
T 3n71_A          356 IASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAG--------HIEVGH--GMICKAYAILL-  424 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHHH-
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC--------CHHHHH--HHHHHHHHHHH-
Confidence            5899999999999999999999985     455554   56788888 8888        566666  55554442111 


Q ss_pred             CCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhc
Q psy3020          73 TKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLD  132 (150)
Q Consensus        73 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~  132 (150)
                                    ..+  +++..   .-......++..+..++.|.+|...|.++.+..
T Consensus       425 --------------~~l--G~~Hp---~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          425 --------------VTH--GPSHP---ITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             --------------HHT--CTTSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------HHh--CCCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                          001  11110   005566788888899999999999999997744

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.80  E-value=9.6e-05  Score=52.71  Aligned_cols=47  Identities=9%  Similarity=-0.024  Sum_probs=42.2

Q ss_pred             hHHHHHHHHHHHHh-----cCHHHHHHHHHHHHhhcCCC-cchhhcHHHHHHh
Q psy3020         102 ISLLKDKGNAALQA-----NNFKEAIEAYSEAIKLDGTN-HILFSNRSAAFAK  148 (150)
Q Consensus       102 ~~~~~~~g~~~~~~-----~~~~~A~~~~~~al~~~p~~-~~~~~n~a~~~~~  148 (150)
                      ..+|..+|..+.+.     |+.+.|.++|++||+++|+. +..++..|..++.
T Consensus       199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~  251 (301)
T 3u64_A          199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCI  251 (301)
T ss_dssp             HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence            67999999999885     99999999999999999975 9999988887765

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.56  E-value=0.00065  Score=48.95  Aligned_cols=123  Identities=11%  Similarity=0.021  Sum_probs=79.2

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCC-----cH-HHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCC--
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPN-----NE-QMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPR--   72 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~-----~~-~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~--   72 (150)
                      .++.++...|+++.|.+.+++..+.+|+     +. -....-+.+ ...|..      ++..++  ..+.+.....|+  
T Consensus       141 l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~------~~q~A~--~~f~El~~~~p~~~  212 (310)
T 3mv2_B          141 LAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKE------TATSNF--YYYEELSQTFPTWK  212 (310)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCS------TTTHHH--HHHHHHHTTSCSHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCc------cHHHHH--HHHHHHHHhCCCcc
Confidence            4678999999999999999999999994     22 233333444 333421      455566  555555555554  


Q ss_pred             CCC-C------CCC-hHHHHHHHHHhc-----------CcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC
Q psy3020          73 TKP-F------LSD-PSYVQMIKEIQK-----------DPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDG  133 (150)
Q Consensus        73 ~~~-~------~~~-~~~~~~~~~l~~-----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p  133 (150)
                      ... .      ..+ +.....++.+..           +|..      +.++.++..+.+..|+  +|.+.++++.+.+|
T Consensus       213 ~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~------~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P  284 (310)
T 3mv2_B          213 TQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK------PTFLANQITLALMQGL--DTEDLTNQLVKLDH  284 (310)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH------HHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC------HHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence            111 0      111 112222322222           2433      8889899888888898  99999999999999


Q ss_pred             CCcchhh
Q psy3020         134 TNHILFS  140 (150)
Q Consensus       134 ~~~~~~~  140 (150)
                      ++|...-
T Consensus       285 ~hp~i~d  291 (310)
T 3mv2_B          285 EHAFIKH  291 (310)
T ss_dssp             CCHHHHH
T ss_pred             CChHHHH
Confidence            9987643

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.50  E-value=0.00014  Score=46.98  Aligned_cols=43  Identities=19%  Similarity=0.186  Sum_probs=37.3

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hhhh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQE   44 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g   44 (150)
                      .+|.+++++|+|++|++.++++|+++|+|..+......+ ..+.
T Consensus        76 ~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~  119 (152)
T 1pc2_A           76 YLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMK  119 (152)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            588999999999999999999999999999998777666 4443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.10  E-value=0.00078  Score=42.05  Aligned_cols=39  Identities=21%  Similarity=0.183  Sum_probs=34.3

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV   40 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~   40 (150)
                      .||..++++|+|++|++.++..|+++|+|..+..-...+
T Consensus        79 ~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A           79 YLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI  117 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            578999999999999999999999999999986555444

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.04  E-value=0.00067  Score=51.11  Aligned_cols=56  Identities=11%  Similarity=0.013  Sum_probs=43.8

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhcc--------CCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKL--------DPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQL   67 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~--------~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l   67 (150)
                      +||.+|..+|+|++|+..|+++|++        +|+-...+..||.+ ..+|        ++.+|.  +.+.+++
T Consensus       345 nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg--------~~~eA~--~~~~~Al  409 (433)
T 3qww_A          345 QAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLE--------NKAAGE--KALKKAI  409 (433)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHH
T ss_pred             HHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhcc--------CHHHHH--HHHHHHH
Confidence            5899999999999999999999975        44444567788988 8999        556666  5555554

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.86  E-value=0.0029  Score=39.76  Aligned_cols=39  Identities=18%  Similarity=0.078  Sum_probs=34.4

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV   40 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~   40 (150)
                      -+|..+.++|+|++|++..+.+|+++|+|..|..-...+
T Consensus        83 yLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I  121 (134)
T 3o48_A           83 YLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  121 (134)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            478899999999999999999999999999987655555

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.83  E-value=0.0031  Score=46.47  Aligned_cols=61  Identities=13%  Similarity=0.092  Sum_probs=51.7

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCC
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTK   74 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~   74 (150)
                      +|..+...|++++|+..+++|+.++|+ ..++..+|.+ ...|        ...+|.  ..+.+++.++|...
T Consensus       283 lal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G--------~~~eA~--e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          283 KAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKG--------MNREAA--DAYLTAFNLRPGAN  344 (372)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHSCSHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCC--------CHHHHH--HHHHHHHhcCCCcC
Confidence            455667789999999999999999985 6777888999 8889        667888  88999999999753

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.82  E-value=0.026  Score=35.86  Aligned_cols=43  Identities=9%  Similarity=-0.031  Sum_probs=37.4

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHH
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSA  144 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~  144 (150)
                      -+.++.++..+++.|+|++|.++...+|+++|+|..+......
T Consensus        77 RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~  119 (144)
T 1y8m_A           77 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  119 (144)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            6778899999999999999999999999999999877554433

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.67  E-value=0.0043  Score=39.47  Aligned_cols=39  Identities=18%  Similarity=0.078  Sum_probs=34.1

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV   40 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~   40 (150)
                      -||..++++|+|++|+++.+..|+++|+|..+..-...+
T Consensus        82 yLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I  120 (144)
T 1y8m_A           82 YLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  120 (144)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            478899999999999999999999999999886555444

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.54  E-value=0.04  Score=34.60  Aligned_cols=43  Identities=9%  Similarity=-0.031  Sum_probs=38.0

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHH
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSA  144 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~  144 (150)
                      -+.++.++..+++.|+|+.|.++...+|++.|+|..+......
T Consensus        78 Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~  120 (134)
T 3o48_A           78 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  120 (134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            6788999999999999999999999999999999877654443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.39  E-value=0.024  Score=45.06  Aligned_cols=116  Identities=8%  Similarity=-0.032  Sum_probs=67.8

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhcc-----------CCC-----------cHHHHHHHHHH-HhhhhccCCCCCchhhhhC
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKL-----------DPN-----------NEQMKEAIKDV-RNQEMNDMNRGDPFANLFS   59 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~-----------~p~-----------~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~   59 (150)
                      .+......|++++|.+.|+++++.           .|.           +..+|...+.+ ...|        .+..|- 
T Consensus       384 ~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~--------~l~~AR-  454 (679)
T 4e6h_A          384 LSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQ--------GLAASR-  454 (679)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH--------CHHHHH-
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcC--------CHHHHH-
Confidence            355667789999999999999985           253           45578888887 6666        333333 


Q ss_pred             ChHHHHhhccCCCC-CC-C----------CCCh-HHHHHH-HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHH
Q psy3020          60 DPNIFVQLQLDPRT-KP-F----------LSDP-SYVQMI-KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAY  125 (150)
Q Consensus        60 ~~~~~~~l~~~~~~-~~-~----------~~~~-~~~~~~-~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~  125 (150)
                       .-+.+++...|.. .. +          ..+. ...... ..+..-|..      +..|...+......|+.+.|-..|
T Consensus       455 -~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~------~~~w~~y~~fe~~~~~~~~AR~lf  527 (679)
T 4e6h_A          455 -KIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATD------GEYINKYLDFLIYVNEESQVKSLF  527 (679)
T ss_dssp             -HHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             -HHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc------hHHHHHHHHHHHhCCCHHHHHHHH
Confidence             3333343321211 11 0          0000 000010 011111211      566677777777889999999999


Q ss_pred             HHHHhhcCC
Q psy3020         126 SEAIKLDGT  134 (150)
Q Consensus       126 ~~al~~~p~  134 (150)
                      ++|+...|+
T Consensus       528 eral~~~~~  536 (679)
T 4e6h_A          528 ESSIDKISD  536 (679)
T ss_dssp             HHHTTTSSS
T ss_pred             HHHHHhcCC
Confidence            999998884

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.16  E-value=0.071  Score=42.42  Aligned_cols=41  Identities=10%  Similarity=0.026  Sum_probs=27.6

Q ss_pred             hHHHHhhCCHHHHH-HHHHHhhccCCCcHHHHHHHHHH-Hhhh
Q psy3020           4 YSCLSYLGRYKESI-STYEEGLKLDPNNEQMKEAIKDV-RNQE   44 (150)
Q Consensus         4 g~~~~~~~~~~~A~-~~~~~aL~~~p~~~~a~~~l~~~-~~~g   44 (150)
                      +..+...|+.++|+ +.|++|+...|.+...+...+.+ ...|
T Consensus       350 a~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~  392 (679)
T 4e6h_A          350 ANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNT  392 (679)
T ss_dssp             HHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Confidence            33445556666775 77777777777777777777777 6666

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.12  E-value=0.0082  Score=45.09  Aligned_cols=56  Identities=11%  Similarity=0.096  Sum_probs=42.9

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhcc-----CCCcHH---HHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKL-----DPNNEQ---MKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQL   67 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~-----~p~~~~---a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l   67 (150)
                      ++|.+|..+|+|++|+..|+++|.+     -|+++.   .+..||.+ ..+|        ++.+|.  ..+.+++
T Consensus       334 ~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g--------~~~eA~--~~~~~Al  398 (429)
T 3qwp_A          334 CAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQG--------MFPQAM--KNLRLAF  398 (429)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcC--------CHHHHH--HHHHHHH
Confidence            5899999999999999999999974     355554   56788888 8888        556666  5554444

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.85  E-value=0.23  Score=34.94  Aligned_cols=122  Identities=11%  Similarity=0.176  Sum_probs=85.6

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChH
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPS   81 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~   81 (150)
                      ....+.+.|.+++|++.....++.+|.|+.....+.++ --.|        +..+|.  ..+.....++|+......  .
T Consensus         3 ~~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G--------~w~RA~--~QL~~~a~l~p~~~~~a~--~   70 (273)
T 1zbp_A            3 QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDG--------DFERAD--EQLMQSIKLFPEYLPGAS--Q   70 (273)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHT--------CHHHHH--HHHHHHHHHCGGGHHHHH--H
T ss_pred             cHHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcC--------CHHHHH--HHHHHHHHhCchhhHHHH--H
Confidence            34567889999999999999999999999999999888 7888        567777  778778888887654210  1


Q ss_pred             HHHHHHH------Hh---cCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCc
Q psy3020          82 YVQMIKE------IQ---KDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNH  136 (150)
Q Consensus        82 ~~~~~~~------l~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~  136 (150)
                      |...|..      +-   ..|.....+.........+......|+.++|.+.-.+|++.-|..+
T Consensus        71 yr~lI~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~  134 (273)
T 1zbp_A           71 LRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG  134 (273)
T ss_dssp             HHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence            1222111      00   1122222223344445556666788999999999999999988654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.39  E-value=0.12  Score=41.68  Aligned_cols=48  Identities=17%  Similarity=0.143  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhcC
Q psy3020         103 SLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKAI  150 (150)
Q Consensus       103 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~~  150 (150)
                      ..+..-+..+..+|+|+-|+++-.+|+..-|.+-..|+.++.||+.+.
T Consensus       338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~  385 (754)
T 4gns_B          338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKE  385 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhc
Confidence            345556777788999999999999999999999999999999999863

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=94.62  E-value=0.19  Score=32.72  Aligned_cols=50  Identities=12%  Similarity=0.234  Sum_probs=40.5

Q ss_pred             HHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcC---CC----------------------cchhhcHHHHHHhc
Q psy3020         100 AKISLLKDKGNAALQANNFKEAIEAYSEAIKLDG---TN----------------------HILFSNRSAAFAKA  149 (150)
Q Consensus       100 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~~----------------------~~~~~n~a~~~~~~  149 (150)
                      .++..+..+|+.++..++|..|...|++||++..   .+                      ..+.|.+|.||+++
T Consensus        61 ~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l  135 (167)
T 3ffl_A           61 QKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVL  135 (167)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHH
Confidence            4588999999999999999999999999876432   11                      14778899999876

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=93.60  E-value=0.18  Score=32.49  Aligned_cols=70  Identities=3%  Similarity=-0.075  Sum_probs=53.5

Q ss_pred             HHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHH
Q psy3020           7 LSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQM   85 (150)
Q Consensus         7 ~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~   85 (150)
                      +...++.++|.+.|+.+++++..++-+|.+.|.. ...|        .+.+|-  .-+.+++.+.|...+     .+..+
T Consensus        70 ~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqg--------nl~kAR--kILg~AiG~~~k~~~-----~le~a  134 (161)
T 4h7y_A           70 LKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQG--------NVKKSK--QLLQKAVERGAVPLE-----MLEIA  134 (161)
T ss_dssp             HHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHTTCBCHH-----HHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcc--------cHHHHH--HHHHHHhccCCCcHH-----HHHHH
Confidence            4566899999999999999999999999999999 7778        666776  777778888876544     23444


Q ss_pred             HHHHhc
Q psy3020          86 IKEIQK   91 (150)
Q Consensus        86 ~~~l~~   91 (150)
                      ++.+..
T Consensus       135 ~~nl~~  140 (161)
T 4h7y_A          135 LRNLNL  140 (161)
T ss_dssp             HHHHHT
T ss_pred             HHhhhc
Confidence            455443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=92.98  E-value=0.33  Score=31.58  Aligned_cols=43  Identities=14%  Similarity=0.182  Sum_probs=33.8

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCC-------------------------CcHHHHHHHHHH-Hhhh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDP-------------------------NNEQMKEAIKDV-RNQE   44 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p-------------------------~~~~a~~~l~~~-~~~g   44 (150)
                      .+|.+++..++|..|...|++||++..                         ...+..+.++.| ..++
T Consensus        68 ~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~  136 (167)
T 3ffl_A           68 YHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLK  136 (167)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHC
Confidence            579999999999999999999876322                         123677778888 7777

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=92.36  E-value=0.96  Score=33.61  Aligned_cols=101  Identities=12%  Similarity=0.027  Sum_probs=57.2

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccC--CCcH----HHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLD--PNNE----QMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTK   74 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~--p~~~----~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~   74 (150)
                      .+|..|+..|+|.+|++.+.+.++--  .++.    +++..-..+ ..+++..     ..+.++  ....+...      
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~-----k~k~~l--~~a~~~~~------  170 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLP-----KARAAL--TSARTTAN------  170 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHH-----HHHHHH--HHHHHHHH------
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHH-----HHHHHH--HHHHhhhc------
Confidence            47899999999999999998888721  1222    233333444 4555322     222222  11111100      


Q ss_pred             CCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHH-HhcCHHHHHHHHHHHHhhcC
Q psy3020          75 PFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAAL-QANNFKEAIEAYSEAIKLDG  133 (150)
Q Consensus        75 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p  133 (150)
                                   .+..+|.     ..+.....-|..++ ..++|..|..+|-++.+-..
T Consensus       171 -------------ai~~~p~-----i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~  212 (394)
T 3txn_A          171 -------------AIYCPPK-----VQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD  212 (394)
T ss_dssp             -------------HSCCCHH-----HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred             -------------cCCCCHH-----HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence                         0001110     11444455677788 89999999999999975443

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=92.33  E-value=0.24  Score=27.62  Aligned_cols=37  Identities=11%  Similarity=0.199  Sum_probs=32.4

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHH
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIK   38 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~   38 (150)
                      .+|..+...|++++|+.+|-+||.+-|+-......+-
T Consensus        22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~i~q   58 (73)
T 3ax2_A           22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQ   58 (73)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            5799999999999999999999999999887765553

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=91.99  E-value=3.2  Score=31.61  Aligned_cols=33  Identities=6%  Similarity=-0.022  Sum_probs=27.8

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHh--hcCC
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIK--LDGT  134 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~  134 (150)
                      ...|..+-..+.+.|+.++|.+.+.+.-+  ..|+
T Consensus       175 ~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps  209 (501)
T 4g26_A          175 EPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVS  209 (501)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBC
T ss_pred             HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcC
Confidence            56788888999999999999999999865  4554

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=91.90  E-value=1.7  Score=28.48  Aligned_cols=35  Identities=11%  Similarity=0.015  Sum_probs=28.6

Q ss_pred             HHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hhhhhc
Q psy3020           7 LSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMN   46 (150)
Q Consensus         7 ~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~   46 (150)
                      -.+.|+++.|.+..+..     ++...|..+|.. ...|+.
T Consensus        15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~   50 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNA   50 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCH
T ss_pred             HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCCh
Confidence            45789999999987765     678899999999 777744

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=91.64  E-value=3.5  Score=31.39  Aligned_cols=45  Identities=4%  Similarity=-0.128  Sum_probs=31.3

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--cCCCcchhhcHHHHHH
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKL--DGTNHILFSNRSAAFA  147 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~n~a~~~~  147 (150)
                      ...|..+-..+.+.|+.++|.+.|.+..+.  .| +...|..+-.+|.
T Consensus       140 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P-d~~ty~~Li~~~~  186 (501)
T 4g26_A          140 LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP-EEPELAALLKVSM  186 (501)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHH
T ss_pred             cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHh
Confidence            567778888888899999999999888764  44 3334444444444

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=91.59  E-value=0.45  Score=36.49  Aligned_cols=46  Identities=20%  Similarity=0.143  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020         103 SLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus       103 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                      ..+..+|.+...+..+..|..+|.+|+.++|++-..|+.+|.+...
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~  198 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS  198 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhc
Confidence            4667899999999999999999999999999999999999988754

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=91.58  E-value=3.2  Score=31.46  Aligned_cols=51  Identities=4%  Similarity=-0.249  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCC
Q psy3020          13 YKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTK   74 (150)
Q Consensus        13 ~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~   74 (150)
                      .+.....|+++|...|..+..|...+.. ...|        +...+.  .-+.+++.. |...
T Consensus       195 ~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~--------~~~~ar--~i~erAi~~-P~~~  246 (493)
T 2uy1_A          195 ESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIG--------QKEKAK--KVVERGIEM-SDGM  246 (493)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHH-CCSS
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHhC-CCcH
Confidence            3456789999999999999999999998 7777        556666  677777777 7754

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=91.40  E-value=1.9  Score=32.79  Aligned_cols=42  Identities=7%  Similarity=-0.047  Sum_probs=37.0

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHH
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSA  144 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~  144 (150)
                      +..|...+..+...|+.++|...|++|+.. |.+..+|+..+.
T Consensus       213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~  254 (493)
T 2uy1_A          213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGL  254 (493)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHh
Confidence            788999999999999999999999999999 999877765443

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=90.90  E-value=0.51  Score=26.28  Aligned_cols=33  Identities=15%  Similarity=0.296  Sum_probs=29.5

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT  134 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  134 (150)
                      +..-..+|..+...|++++|+.+|.+|+..-|+
T Consensus        17 Fl~eV~~GE~L~~~g~~~~~~~hf~nAl~Vc~q   49 (73)
T 3ax2_A           17 FLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQ   49 (73)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence            555577999999999999999999999999985

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=90.75  E-value=0.52  Score=36.12  Aligned_cols=42  Identities=17%  Similarity=0.173  Sum_probs=37.4

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hhhh
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQE   44 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g   44 (150)
                      ||........++.|...|.+|+.+.|++...++.||.+ ...|
T Consensus       158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~  200 (497)
T 1ya0_A          158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG  200 (497)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhccc
Confidence            67777777888999999999999999999999999998 6655

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.79  E-value=3.6  Score=30.69  Aligned_cols=101  Identities=11%  Similarity=0.025  Sum_probs=59.9

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCC---cHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPN---NEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~---~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~   77 (150)
                      .+|.-|...|++++|+++|.++.....+   -.+.+..+..+ ...+++        ..+.  ..+.++           
T Consensus       136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~--------~~~~--~~~~ka-----------  194 (429)
T 4b4t_R          136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQ--------LYVK--EKLEAV-----------  194 (429)
T ss_dssp             HHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCH--------HHHH--HHHHHH-----------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccH--------HHHH--HHHHHH-----------
Confidence            4788999999999999999998874433   33556666666 555533        2222  122111           


Q ss_pred             CChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC
Q psy3020          78 SDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT  134 (150)
Q Consensus        78 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  134 (150)
                               ..+........  .+.......|..++..++|.+|-..|-+++.....
T Consensus       195 ---------~~~~~~~~d~~--~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~  240 (429)
T 4b4t_R          195 ---------NSMIEKGGDWE--RRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTS  240 (429)
T ss_dssp             ---------HHHHTTCCCTH--HHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred             ---------HHhhhcCCCHH--HHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence                     11111100000  11223334566777899999999999998775443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=89.54  E-value=0.41  Score=35.29  Aligned_cols=44  Identities=14%  Similarity=0.021  Sum_probs=39.4

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hhhhhc
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMN   46 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~   46 (150)
                      ++.++...|++.+|+..+.+++..+|-+..+|..+..+ ...|+.
T Consensus       177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~  221 (388)
T 2ff4_A          177 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQ  221 (388)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            46678899999999999999999999999999998888 888844

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=88.58  E-value=0.83  Score=26.59  Aligned_cols=29  Identities=21%  Similarity=0.281  Sum_probs=23.2

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIK  130 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~  130 (150)
                      +-.+.-++..+.+.|+|++||++..+|..
T Consensus        15 AH~~~RrAe~ll~~gkydeAIech~kAa~   43 (97)
T 2crb_A           15 AHQQSRRADRLLAAGKYEEAISCHRKATT   43 (97)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence            34455678888999999999998888764

>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1

Probab=88.26  E-value=0.43  Score=28.01  Aligned_cols=38  Identities=11%  Similarity=0.202  Sum_probs=32.4

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHH
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKD   39 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~   39 (150)
                      .+|..+...|+++.|+.+|-+||.+-|.-......+-.
T Consensus        25 ~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL~i~q~   62 (95)
T 1om2_A           25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQ   62 (95)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            57999999999999999999999999997776655533

>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}

Probab=87.91  E-value=1.9  Score=28.81  Aligned_cols=38  Identities=21%  Similarity=0.146  Sum_probs=33.4

Q ss_pred             HhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcch
Q psy3020         101 KISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHIL  138 (150)
Q Consensus       101 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~  138 (150)
                      .+.-.+.+|..++..++|.+|.+++.+|+..-|.+...
T Consensus        13 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~   50 (203)
T 3t5x_A           13 RVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQK   50 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHH
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHH
Confidence            37778899999999999999999999999998876543

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=87.54  E-value=1.6  Score=25.03  Aligned_cols=30  Identities=17%  Similarity=0.301  Sum_probs=20.9

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKL  131 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~  131 (150)
                      +..+...+.-.=..|+|++|+.+|..+++.
T Consensus        16 A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~   45 (86)
T 4a5x_A           16 AATVLKRAVELDSESRYPQALVCYQEGIDL   45 (86)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            344445555556789999888888888764

>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1

Probab=87.36  E-value=0.96  Score=26.53  Aligned_cols=33  Identities=15%  Similarity=0.296  Sum_probs=29.5

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT  134 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  134 (150)
                      +..-..+|..+...|+++.|+.+|.+|+.+-|+
T Consensus        20 Fl~eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q   52 (95)
T 1om2_A           20 FLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQ   52 (95)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence            555677999999999999999999999999885

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=86.97  E-value=1.3  Score=35.73  Aligned_cols=40  Identities=13%  Similarity=0.093  Sum_probs=36.8

Q ss_pred             HHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hhhhhc
Q psy3020           7 LSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMN   46 (150)
Q Consensus         7 ~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~   46 (150)
                      +...|+|+-|+.+-++|...-|+.+..|..|+.+ ..+|++
T Consensus       347 Ll~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~  387 (754)
T 4gns_B          347 LLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEY  387 (754)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCH
T ss_pred             HhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccH
Confidence            4567999999999999999999999999999999 999933

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.79  E-value=4.5  Score=30.34  Aligned_cols=96  Identities=9%  Similarity=-0.056  Sum_probs=56.2

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhc----cCCCc--HHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHh---hccCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLK----LDPNN--EQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQ---LQLDP   71 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~----~~p~~--~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~---l~~~~   71 (150)
                      .|+..|...|++.+|...+.....    .++..  .+.+.....+ ...+        ++.++.  ..+.+.   ....+
T Consensus       142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~--------d~~~a~--~~~~ki~~~~~~~~  211 (445)
T 4b4t_P          142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKG--------DYSQAT--VLSRKILKKTFKNP  211 (445)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHT--------CHHHHH--HHHHHHHHHHHHSS
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCC--------CHHHHH--HHHHHHHHhhcccC
Confidence            378899999999999999888653    22211  1233333444 4444        333332  111110   11111


Q ss_pred             CCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q psy3020          72 RTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKL  131 (150)
Q Consensus        72 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~  131 (150)
                      .                   .| .    -+...+...|..+...++|.+|.++|.++.+.
T Consensus       212 ~-------------------~~-~----lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          212 K-------------------YE-S----LKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             C-------------------CH-H----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             C-------------------cH-H----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            0                   00 0    12455667788888999999999999999864

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=86.25  E-value=2  Score=24.41  Aligned_cols=30  Identities=27%  Similarity=0.252  Sum_probs=21.7

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKL  131 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~  131 (150)
                      +..+...+...=+.|+|++|+.+|.++++.
T Consensus        19 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~   48 (83)
T 2w2u_A           19 ARKYAINAVKADKEGNAEEAITNYKKAIEV   48 (83)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            455556666666788988888888877763

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=84.41  E-value=2.7  Score=23.79  Aligned_cols=30  Identities=20%  Similarity=0.182  Sum_probs=20.7

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKL  131 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~  131 (150)
                      +..+...+.-.=+.|+|++|+.+|.++++.
T Consensus        11 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~   40 (83)
T 2v6y_A           11 ARKYAILAVKADKEGKVEDAITYYKKAIEV   40 (83)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            444555565556788888888888777763

>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}

Probab=83.75  E-value=0.2  Score=27.77  Aligned_cols=42  Identities=29%  Similarity=0.623  Sum_probs=34.2

Q ss_pred             hhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhh
Q psy3020          57 LFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTL   98 (150)
Q Consensus        57 a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   98 (150)
                      .|.++++...+..+|+...++.++.+..+++.+..+|..+..
T Consensus         9 ~f~~p~~~~kl~~dP~t~~~~~DP~~~~~lq~i~~NP~~i~~   50 (71)
T 2llv_A            9 LFADPNLIENLKKNPKTSEMMKDPQLVAKLIGYKQNPQAIGQ   50 (71)
T ss_dssp             HHHSSSCHHHHHHSSTTHHHHHSCTHHHHHHHHHHSCTTHHH
T ss_pred             hccChHHHHHHHcChHHHHHhcCHHHHHHHHHHHHCHHHHHH
Confidence            443456667888899999999999999999999999988544

>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}

Probab=82.36  E-value=0.72  Score=26.01  Aligned_cols=24  Identities=21%  Similarity=0.342  Sum_probs=21.3

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhc
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLK   25 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~   25 (150)
                      .+|+-|.-+|+|+.|+.+|+.+++
T Consensus        17 k~ARe~Al~GnYdta~~yY~g~~~   40 (78)
T 2rpa_A           17 KLAREYALLGNYDSAMVYYQGVLD   40 (78)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHH
Confidence            478889999999999999999884

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=81.90  E-value=3.4  Score=30.33  Aligned_cols=48  Identities=10%  Similarity=0.061  Sum_probs=40.7

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      ..+...+...+...|++.+|+..+.+++..+|-+..+|..+-.+|...
T Consensus       171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~  218 (388)
T 2ff4_A          171 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLS  218 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            455566777888999999999999999999999999988887777654

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=81.61  E-value=4  Score=23.07  Aligned_cols=30  Identities=23%  Similarity=0.197  Sum_probs=21.0

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKL  131 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~  131 (150)
                      +..+...+.-.=..|+|++|+..|..+++.
T Consensus        13 A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~   42 (85)
T 2v6x_A           13 GIELVQKAIDLDTATQYEEAYTAYYNGLDY   42 (85)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            444455555555779999998888888773

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=81.36  E-value=1.5  Score=25.49  Aligned_cols=21  Identities=29%  Similarity=0.349  Sum_probs=17.5

Q ss_pred             hHHHHhhCCHHHHHHHHHHhh
Q psy3020           4 YSCLSYLGRYKESISTYEEGL   24 (150)
Q Consensus         4 g~~~~~~~~~~~A~~~~~~aL   24 (150)
                      +..+...|+|++||++.++|.
T Consensus        22 Ae~ll~~gkydeAIech~kAa   42 (97)
T 2crb_A           22 ADRLLAAGKYEEAISCHRKAT   42 (97)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHH
Confidence            567888999999999887765

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=80.85  E-value=8.9  Score=24.65  Aligned_cols=46  Identities=9%  Similarity=-0.018  Sum_probs=36.7

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                      +..|...+....++|+...|.+.+.+|+.+.|... -....|+.-++
T Consensus        94 AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~~nl~  139 (161)
T 4h7y_A           94 AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIALRNLN  139 (161)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHHHhhh
Confidence            67888889999999999999999999999999643 33445554443

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=80.22  E-value=4.6  Score=23.35  Aligned_cols=30  Identities=13%  Similarity=0.285  Sum_probs=20.3

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKL  131 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~  131 (150)
                      +..+...+.-.=..|+|++|+.+|..+++.
T Consensus        15 Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~   44 (93)
T 1wfd_A           15 AVAVLKRAVELDAESRYQQALVCYQEGIDM   44 (93)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            444555555556778888888888777763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	150
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.001
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	4e-05
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	2e-04
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	0.002
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	4e-04
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	0.001
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	0.002

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 6e-06
 Identities = 21/144 (14%), Positives = 46/144 (31%), Gaps = 3/144 (2%)

Query: 5   SCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIF 64
                 G    +I TY   ++L P+       + +   +E   +   +   N        
Sbjct: 245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL-KEKGSVAEAEDCYNTALRLCPT 303

Query: 65  VQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEA 124
               L+          +  + ++  +K  +L       +   +  +   Q    +EA+  
Sbjct: 304 HADSLNNLANIKREQGNIEEAVRLYRK--ALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361

Query: 125 YSEAIKLDGTNHILFSNRSAAFAK 148
           Y EAI++  T    +SN      +
Sbjct: 362 YKEAIRISPTFADAYSNMGNTLKE 385

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 6/44 (13%), Positives = 16/44 (36%)

Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
             +  +   QA +F+ A     +  + +  N  +    S+   +
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQ 45

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.6 bits (91), Expect = 4e-05
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF 146
           LK++GN       + EA   Y  AI  +    + ++NR+  +
Sbjct: 7   LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCY 48

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 2e-04
 Identities = 19/37 (51%), Positives = 27/37 (72%)

Query: 101 KISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHI 137
           +++ LK+KGN AL   N  +A++ YSEAIKLD  NH+
Sbjct: 2   QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV 38

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (76), Expect = 0.002
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 1   MTTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDVR 41
               + L +L R++E+  TYEEGLK + NN Q+KE ++++ 
Sbjct: 75  SRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 115

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 4e-04
 Identities = 7/42 (16%), Positives = 17/42 (40%)

Query: 107 DKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
           ++G   LQ  +   A+  +  A++ D  +   +       A+
Sbjct: 24  EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAE 65

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 10/41 (24%), Positives = 15/41 (36%)

Query: 109 GNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA 149
              AL     ++A+E   EAIK    +  L S+        
Sbjct: 3   WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCID 43

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (78), Expect = 0.002
 Identities = 14/44 (31%), Positives = 26/44 (59%)

Query: 105 LKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK 148
            K+ GN A +  +F  A++ Y +A +LD TN    +N++A + +
Sbjct: 7   EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE 50

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	150
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.82
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.78
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.78
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.74
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.74
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.72
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.7
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.7
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.69
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.64
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.63
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.62
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.62
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.6
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.59
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.57
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.57
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.57
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.57
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.51
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.43
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.41
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.41
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.31
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.27
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.26
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.25
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.18
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.17
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.16
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.16
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.12
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.1
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.08
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	99.06
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.03
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.95
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.9
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.87
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.8
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.68
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.65
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.51
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.48
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.42
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.29
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.28
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.27
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.25
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.95
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.88
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.83
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.33
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.11
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.92
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	92.49
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	91.11
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	88.05
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	87.2
d1om2a_	95	Mitochondrial import receptor subunit Tom20 {Rat (	86.78
d1om2a_	95	Mitochondrial import receptor subunit Tom20 {Rat (	86.57
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	81.33

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.6e-19  Score=111.84  Aligned_cols=107  Identities=21%  Similarity=0.249  Sum_probs=99.7

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChH
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPS   81 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~   81 (150)
                      .|..++..|+|++|+..|+++|+++|+++.++..+|.+ ..+|        ++.+|+  ..+.+++.++|++        
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~--------~~~~A~--~~~~~al~~~p~~--------   70 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKG--------DYQKAY--EDGCKTVDLKPDW--------   70 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--------CHHHHH--HHHHHHHHHCTTC--------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccc--------cccccc--hhhhhHHHhccch--------
Confidence            58999999999999999999999999999999999999 9999        778888  8888888888864        


Q ss_pred             HHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHH
Q psy3020          82 YVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFA  147 (150)
Q Consensus        82 ~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~  147 (150)
                                          +.+|..+|.++..+|++++|+.+|+++++++|+++.++.+++.+..
T Consensus        71 --------------------~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          71 --------------------GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             --------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             --------------------hhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence                                7789999999999999999999999999999999999999988754

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.7e-18  Score=112.31  Aligned_cols=107  Identities=14%  Similarity=0.189  Sum_probs=98.9

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      ..|..++..|+|++|+.+|+++|+++|+++.+|..+|.+ ..+|        ++.+|+  ..+.+++.++|++       
T Consensus        15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~--------~~~~A~--~~~~kal~~~p~~-------   77 (159)
T d1a17a_          15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTE--------CYGYAL--GDATRAIELDKKY-------   77 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC-------
T ss_pred             HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhcc--------ccchHH--HHHHHHHHHcccc-------
Confidence            358999999999999999999999999999999999999 9999        778888  8888888888864       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHH
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF  146 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~  146 (150)
                                           +.+|..+|.++...|++++|+++|.+++.++|+++.++..++.|.
T Consensus        78 ---------------------~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~  122 (159)
T d1a17a_          78 ---------------------IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN  122 (159)
T ss_dssp             ---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             ---------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence                                 778999999999999999999999999999999999988887775

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=1.4e-18  Score=115.67  Aligned_cols=108  Identities=15%  Similarity=0.143  Sum_probs=98.7

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      ..|.+++..|+|++|+..|++||+++|+++.+|..+|.+ ..+|        .+.+|+  ..+.+++.++|+.       
T Consensus         9 ~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~--------~~~~Ai--~~~~~al~l~p~~-------   71 (201)
T d2c2la1           9 EQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQ--------QPEQAL--ADCRRALELDGQS-------   71 (201)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHTTSCTTC-------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhh--------hhhhhh--HHHHHHHHhCCCc-------
Confidence            369999999999999999999999999999999999999 9999        788899  8999999998864       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHH
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFA  147 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~  147 (150)
                                           +.+|..+|.+++.+|+|++|+.+|++|++++|++...+...+..++
T Consensus        72 ---------------------~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l  117 (201)
T d2c2la1          72 ---------------------VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL  117 (201)
T ss_dssp             ---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred             ---------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence                                 7789999999999999999999999999999998877776665554

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.3e-17  Score=114.68  Aligned_cols=109  Identities=15%  Similarity=0.048  Sum_probs=100.1

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.+|...|++++|++.|++||+++|+++.++..+|.+ ..+|        ++.+|+  ..+.+++.++|++       
T Consensus        42 ~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g--------~~~~A~--~~~~~al~~~p~~-------  104 (259)
T d1xnfa_          42 ERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAG--------NFDAAY--EAFDSVLELDPTY-------  104 (259)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC-------
T ss_pred             HHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHH--------HHHHhh--hhhhHHHHHHhhh-------
Confidence            579999999999999999999999999999999999999 9999        778888  8888888888864       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                                           +.++..+|.+++..|++++|++.|+++++++|++...+.+++.++..
T Consensus       105 ---------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  151 (259)
T d1xnfa_         105 ---------------------NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQK  151 (259)
T ss_dssp             ---------------------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             ---------------------hhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence                                 67899999999999999999999999999999999888888877654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=4.7e-18  Score=105.89  Aligned_cols=114  Identities=5%  Similarity=-0.049  Sum_probs=95.3

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .++..+...+++++|.+.|+++|+++|+++++++.+|.+ ...++..     ++.+|+  ..+.+.+..+|..       
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~-----d~~~Ai--~~l~~~l~~~~~~-------   69 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYND-----DIRKGI--VLLEELLPKGSKE-------   69 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHH-----HHHHHH--HHHHHHTTTSCHH-------
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchH-----HHHHHH--HHHHHHHhccCCc-------
Confidence            467889999999999999999999999999999999998 6544332     566677  6666666655531       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                                         .++.+|+++|.++++.|+|++|+++|+++|+++|++..+...++.+.-+
T Consensus        70 -------------------~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~  118 (122)
T d1nzna_          70 -------------------EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKA  118 (122)
T ss_dssp             -------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             -------------------hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence                               2267899999999999999999999999999999999999988877643

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=3.2e-17  Score=117.02  Aligned_cols=133  Identities=17%  Similarity=0.206  Sum_probs=109.2

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC---
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL---   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~---   77 (150)
                      .+|.++...|++++|+..|+++++++|+++.++..++.+ ..+|        .+.+|+  ..+...+...|......   
T Consensus       242 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~--------~~~~A~--~~~~~~~~~~~~~~~~~~~l  311 (388)
T d1w3ba_         242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG--------SVAEAE--DCYNTALRLCPTHADSLNNL  311 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHS--------CHHHHH--HHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------CHHHHH--HHHHhhhccCCccchhhhHH
Confidence            478999999999999999999999999999999999999 8888        666777  77777777777765421   


Q ss_pred             -----CChHHHHHHH----HHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          78 -----SDPSYVQMIK----EIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        78 -----~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                           ....+..++.    .++..|..      +.+|..+|.++...|++++|+++|+++++++|+++.+|+++|.+|.+
T Consensus       312 ~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~  385 (388)
T d1w3ba_         312 ANIKREQGNIEEAVRLYRKALEVFPEF------AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE  385 (388)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHTTSCTTC------HHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence                 1112222222    24456655      88999999999999999999999999999999999999999999987


Q ss_pred             cC
Q psy3020         149 AI  150 (150)
Q Consensus       149 ~~  150 (150)
                      +.
T Consensus       386 ~~  387 (388)
T d1w3ba_         386 MQ  387 (388)
T ss_dssp             TC
T ss_pred             cC
Confidence            63

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.7e-17  Score=115.78  Aligned_cols=132  Identities=8%  Similarity=0.095  Sum_probs=108.0

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCC-
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD-   79 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~-   79 (150)
                      .+|.++.+.+++++|++.|++||+++|++..+|..++.+ ..+|.       ++.+++  ..+.+++..+|++...... 
T Consensus        48 ~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~-------~~~eal--~~~~~al~~~p~~~~a~~~~  118 (315)
T d2h6fa1          48 YFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQK-------DLHEEM--NYITAIIEEQPKNYQVWHHR  118 (315)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-------CHHHHH--HHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCc-------CHHHHH--HHHHHHHHHHHhhhhHHHHH
Confidence            368899999999999999999999999999999999999 77762       467788  8888899999988764211 


Q ss_pred             -----------hHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          80 -----------PSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        80 -----------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                                 ......-..+..+|..      ..+|.++|.++...|++++|+++|+++|+++|++..+|++||.++..
T Consensus       119 ~~~~~~l~~~~eAl~~~~kal~~dp~n------~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~  192 (315)
T d2h6fa1         119 RVLVEWLRDPSQELEFIADILNQDAKN------YHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  192 (315)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hHHHHhhccHHHHHHHHhhhhhhhhcc------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHH
Confidence                       0111111224455555      89999999999999999999999999999999999999999998764

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.70  E-value=2.8e-17  Score=105.22  Aligned_cols=116  Identities=15%  Similarity=0.101  Sum_probs=93.2

Q ss_pred             ChhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccC--CCCCchhhhhCChHHHHhhccCCCCCCCC
Q psy3020           1 MTTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDM--NRGDPFANLFSDPNIFVQLQLDPRTKPFL   77 (150)
Q Consensus         1 ~~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~--~~~~~~~~a~~~~~~~~~l~~~~~~~~~~   77 (150)
                      |.+++.+.+++.|++|++.|++|++++|+|++++..+|.+ ..+++...  +....+.+|+  ..+.+++.++|++    
T Consensus         1 ~d~~~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai--~~~~kAl~l~P~~----   74 (145)
T d1zu2a1           1 MDTETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAI--TKFEEALLIDPKK----   74 (145)
T ss_dssp             CSCCCSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH--HHHHHHHHHCTTC----
T ss_pred             CChhHHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHH--HHHHHHHHhcchh----
Confidence            4567788999999999999999999999999999999998 76664420  0011345566  6666677777754    


Q ss_pred             CChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHhhcCCCcchhhcHHHHH
Q psy3020          78 SDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQAN-----------NFKEAIEAYSEAIKLDGTNHILFSNRSAAF  146 (150)
Q Consensus        78 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~~n~a~~~  146 (150)
                                              +.+|.++|.++..+|           .|++|+++|.++++++|++...+.+++.+.
T Consensus        75 ------------------------~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~  130 (145)
T d1zu2a1          75 ------------------------DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA  130 (145)
T ss_dssp             ------------------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ------------------------hHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH
Confidence                                    778888998887665           479999999999999999999999988875

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.4e-16  Score=111.48  Aligned_cols=48  Identities=21%  Similarity=0.165  Sum_probs=35.0

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      +.+|..+|.++...|++++|+++|+++++++|+++.+|+++|.+|..+
T Consensus       206 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  253 (323)
T d1fcha_         206 YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINL  253 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHC
Confidence            566677777777777777777777777777777777777777777654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.4e-16  Score=98.71  Aligned_cols=104  Identities=13%  Similarity=0.174  Sum_probs=92.0

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.+++..|+|++|+++|+++|+++|+++.++..+|.+ ..+|        ++.+|+  ..+.+++.++|+.....   
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~--------~~~~A~--~~~~~al~l~~~~~~~~---   75 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKG--------DYNKCR--ELCEKAIEVGRENREDY---   75 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--------CHHHHH--HHHHHHHHHHHHSTTCH---
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcC--------chHHHH--HHHHHHHHhCcccHHHH---
Confidence            479999999999999999999999999999999999999 9999        778888  88988898888765532   


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCc
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNH  136 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~  136 (150)
                        ...                ..++..+|.++...+++++|+++|++++..+|+..
T Consensus        76 --~~~----------------a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~  113 (128)
T d1elra_          76 --RQI----------------AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPD  113 (128)
T ss_dssp             --HHH----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             --HHH----------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHH
Confidence              111                67899999999999999999999999999998643

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.4e-15  Score=99.44  Aligned_cols=108  Identities=16%  Similarity=0.195  Sum_probs=94.3

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcH---------------HHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHh
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNE---------------QMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQ   66 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~---------------~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~   66 (150)
                      .|..++..|+|++|+..|++||++.|...               .++..+|.+ ..+|        ++.+++  ..+.++
T Consensus        19 ~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~--------~~~~A~--~~~~~a   88 (170)
T d1p5qa1          19 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQ--------AFSAAI--ESCNKA   88 (170)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhh--------hccccc--chhhhh
Confidence            58899999999999999999999988643               345677888 8888        778888  888888


Q ss_pred             hccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHH
Q psy3020          67 LQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF  146 (150)
Q Consensus        67 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~  146 (150)
                      +.++|++                            +.+|..+|.+++..|+|++|+.+|+++++++|+++.+...++.++
T Consensus        89 l~~~p~~----------------------------~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  140 (170)
T d1p5qa1          89 LELDSNN----------------------------EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQ  140 (170)
T ss_dssp             HHHCTTC----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             hhccccc----------------------------hhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            8888864                            788999999999999999999999999999999999999998886


Q ss_pred             Hh
Q psy3020         147 AK  148 (150)
Q Consensus       147 ~~  148 (150)
                      -+
T Consensus       141 ~~  142 (170)
T d1p5qa1         141 QR  142 (170)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.63  E-value=2.1e-15  Score=98.35  Aligned_cols=108  Identities=12%  Similarity=0.154  Sum_probs=96.9

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhc----------------cCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHH
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLK----------------LDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFV   65 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~----------------~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~   65 (150)
                      .|..++..|+|++|++.|++||+                ++|.++.++..+|.+ ..+|        .+.+|+  ..+.+
T Consensus        33 ~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~--------~~~~Ai--~~~~~  102 (169)
T d1ihga1          33 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS--------DWQGAV--DSCLE  102 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhc--------ccchhh--hhhhh
Confidence            58899999999999999999985                467777888899999 8999        778888  88888


Q ss_pred             hhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHH
Q psy3020          66 QLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAA  145 (150)
Q Consensus        66 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~  145 (150)
                      ++.++|++                            +.+|..+|.+++..|++++|+++|.++++++|+++.++..++.|
T Consensus       103 al~~~p~~----------------------------~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~  154 (169)
T d1ihga1         103 ALEIDPSN----------------------------TKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV  154 (169)
T ss_dssp             HHTTCTTC----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhhhhhhh----------------------------hhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99888864                            78899999999999999999999999999999999999999888


Q ss_pred             HHh
Q psy3020         146 FAK  148 (150)
Q Consensus       146 ~~~  148 (150)
                      +.+
T Consensus       155 ~~~  157 (169)
T d1ihga1         155 KQK  157 (169)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.62  E-value=5e-15  Score=95.25  Aligned_cols=108  Identities=17%  Similarity=0.161  Sum_probs=93.2

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcH----------------HHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHH
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNE----------------QMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFV   65 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~----------------~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~   65 (150)
                      .|..++..|+|.+|+..|++||++-|...                ..+..+|.+ ..+|        .+.+|+  ..+..
T Consensus        23 ~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~--------~~~~Al--~~~~~   92 (153)
T d2fbna1          23 EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNK--------DYPKAI--DHASK   92 (153)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhc--------ccchhh--hhhhc
Confidence            58899999999999999999998776432                245678888 8888        677888  78888


Q ss_pred             hhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHH
Q psy3020          66 QLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAA  145 (150)
Q Consensus        66 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~  145 (150)
                      ++.++|++                            +.+|..+|.++...|++++|+.+|+++++++|+++.+..+++.+
T Consensus        93 al~~~p~~----------------------------~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~  144 (153)
T d2fbna1          93 VLKIDKNN----------------------------VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC  144 (153)
T ss_dssp             HHHHSTTC----------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             cccccchh----------------------------hhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            88888754                            78999999999999999999999999999999999999999888


Q ss_pred             HHh
Q psy3020         146 FAK  148 (150)
Q Consensus       146 ~~~  148 (150)
                      .-+
T Consensus       145 ~~k  147 (153)
T d2fbna1         145 VNK  147 (153)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.62  E-value=2.2e-15  Score=92.09  Aligned_cols=90  Identities=13%  Similarity=0.115  Sum_probs=83.3

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.+++..|++++|+.+|+++++++|+++.++..+|.+ ..+|        .+.+|+  ..+.+++.++|++       
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~--------~~~~A~--~~~~~al~~~p~~-------   83 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENE--------KDGLAI--IALNHARMLDPKD-------   83 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC-------
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhh--------hHHHhh--ccccccccccccc-------
Confidence            479999999999999999999999999999999999999 9999        677888  8888888888864       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAI  129 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al  129 (150)
                                           +.+|..+|.++...|++++|++++++.|
T Consensus        84 ---------------------~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          84 ---------------------IAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------------------ccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence                                 7789999999999999999999999986

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.3e-14  Score=96.61  Aligned_cols=124  Identities=9%  Similarity=-0.003  Sum_probs=98.5

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      ++|.+|..+|++++|+++|++||++||+++.++..+|.+ ..+|        ++.+|+  ..+.+++...+.+.....  
T Consensus        41 nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g--------~~~~A~--~~~~kAl~~~~~n~~~~~--  108 (192)
T d1hh8a_          41 NIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE--------KYDLAI--KDLKEALIQLRGNQLIDY--  108 (192)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHTTTTCSEEEC--
T ss_pred             HHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhc--------cHHHHH--HHHHHHHHhCccCchHHH--
Confidence            689999999999999999999999999999999999999 9999        778888  888888876665443100  


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHH
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFA  147 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~  147 (150)
                        . .+ .+.-....      ...+.++|.++.+.|++++|++.|.+|+.+.|+........++..+
T Consensus       109 --~-~~-~~~~~~~~------~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~  165 (192)
T d1hh8a_         109 --K-IL-GLQFKLFA------CEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECV  165 (192)
T ss_dssp             --G-GG-TBCCEEEH------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHH
T ss_pred             --H-Hh-hhhcccch------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence              0 00 00001111      5778999999999999999999999999999998777777776544

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.4e-15  Score=107.46  Aligned_cols=102  Identities=16%  Similarity=0.235  Sum_probs=86.2

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|.++...|++++|+..|+++++.+|+++.++..+|.+ ..+|        .+.+|+  ..+.+++.++|++       
T Consensus       177 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--------~~~~A~--~~~~~al~~~p~~-------  239 (323)
T d1fcha_         177 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN--------QSEEAV--AAYRRALELQPGY-------  239 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC-------
T ss_pred             hhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccc--------cchhHH--HHHHHHHHHhhcc-------
Confidence            478899999999999999999999999999999999999 8888        667777  7777777777753       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhc
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSN  141 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n  141 (150)
                                           +.+|..+|.++...|++++|++.|++||+++|++...+..
T Consensus       240 ---------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~  279 (323)
T d1fcha_         240 ---------------------IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE  279 (323)
T ss_dssp             ---------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------
T ss_pred             ---------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhh
Confidence                                 7789999999999999999999999999999998765443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.1e-14  Score=94.73  Aligned_cols=107  Identities=12%  Similarity=0.084  Sum_probs=93.7

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      ..|.++...|+|++|++.|.+   +.|.++.++..+|.+ ..+|        ++.+|+  ..+.+++.++|++       
T Consensus        10 ~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g--------~~~~A~--~~~~kAl~ldp~~-------   69 (192)
T d1hh8a_          10 NEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILK--------NMTEAE--KAFTRSINRDKHL-------   69 (192)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC-------
T ss_pred             HHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcC--------CchhHH--HHHHHHHHHhhhh-------
Confidence            358899999999999999987   467788999999999 9999        788888  8899999988864       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCc----------------chhhcHHH
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNH----------------ILFSNRSA  144 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----------------~~~~n~a~  144 (150)
                                           +.+|.++|.+++++|+|++|++.|++|++..|.++                ..++|+|.
T Consensus        70 ---------------------~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~  128 (192)
T d1hh8a_          70 ---------------------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF  128 (192)
T ss_dssp             ---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHH
T ss_pred             ---------------------hhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHH
Confidence                                 78999999999999999999999999999877653                34678899


Q ss_pred             HHHhc
Q psy3020         145 AFAKA  149 (150)
Q Consensus       145 ~~~~~  149 (150)
                      ++.++
T Consensus       129 ~~~~~  133 (192)
T d1hh8a_         129 MYAKK  133 (192)
T ss_dssp             HHHHT
T ss_pred             HHHHC
Confidence            88765

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.57  E-value=1e-14  Score=95.02  Aligned_cols=108  Identities=14%  Similarity=0.087  Sum_probs=92.8

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCc---------------HHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHh
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNN---------------EQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQ   66 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~---------------~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~   66 (150)
                      .|..++..|+|++|+..|++||.+-|..               ..++..+|.| ..+|        ++.+|+  ..+..+
T Consensus        21 ~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~--------~~~~Ai--~~~~~a   90 (168)
T d1kt1a1          21 KGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLR--------EYTKAV--ECCDKA   90 (168)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhh--------hcccch--hhhhhh
Confidence            5899999999999999999999754432               2345678888 8888        778888  888888


Q ss_pred             hccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHH
Q psy3020          67 LQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF  146 (150)
Q Consensus        67 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~  146 (150)
                      +.++|++                            +.+|..+|.++...|+|++|+++|.++++++|+++.++..++.+.
T Consensus        91 l~l~p~~----------------------------~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  142 (168)
T d1kt1a1          91 LGLDSAN----------------------------EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQ  142 (168)
T ss_dssp             HHHCTTC----------------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred             hhcccch----------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            8888864                            788999999999999999999999999999999999999988886


Q ss_pred             Hh
Q psy3020         147 AK  148 (150)
Q Consensus       147 ~~  148 (150)
                      .+
T Consensus       143 ~~  144 (168)
T d1kt1a1         143 KK  144 (168)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3e-14  Score=101.42  Aligned_cols=131  Identities=12%  Similarity=0.029  Sum_probs=106.1

Q ss_pred             hhhHHHHhhCC-HHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCC-
Q psy3020           2 TTYSCLSYLGR-YKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLS-   78 (150)
Q Consensus         2 ~lg~~~~~~~~-~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~-   78 (150)
                      ..|.++..+|+ +++|+..|+++|+++|++..++..+|.+ ..+|        .+.+|+  ..+.+++.++|++..... 
T Consensus        82 ~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~--------~~~eAl--~~~~kal~~dp~n~~a~~~  151 (315)
T d2h6fa1          82 FRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLR--------DPSQEL--EFIADILNQDAKNYHAWQH  151 (315)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT--------CCTTHH--HHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhc--------cHHHHH--HHHhhhhhhhhcchHHHHH
Confidence            35888888875 9999999999999999999999999999 9999        667888  889999999998765311 


Q ss_pred             ---------C--hHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcC------HHHHHHHHHHHHhhcCCCcchhhc
Q psy3020          79 ---------D--PSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANN------FKEAIEAYSEAIKLDGTNHILFSN  141 (150)
Q Consensus        79 ---------~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~n  141 (150)
                               +  ......-..++.+|..      ..+|.++|.++...+.      +++|++.+.++++++|+++.+|++
T Consensus       152 ~~~~~~~~~~~~~Al~~~~~al~~~p~n------~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~  225 (315)
T d2h6fa1         152 RQWVIQEFKLWDNELQYVDQLLKEDVRN------NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNY  225 (315)
T ss_dssp             HHHHHHHHTCCTTHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHCCcc------HHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHH
Confidence                     0  0111112225556655      8899999999877665      789999999999999999999999


Q ss_pred             HHHHHHh
Q psy3020         142 RSAAFAK  148 (150)
Q Consensus       142 ~a~~~~~  148 (150)
                      ++.++..
T Consensus       226 l~~ll~~  232 (315)
T d2h6fa1         226 LKGILQD  232 (315)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHh
Confidence            9988754

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=1.8e-14  Score=98.75  Aligned_cols=128  Identities=13%  Similarity=0.053  Sum_probs=94.8

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC---
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL---   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~---   77 (150)
                      .+|.+|..+|++++|+++|+++++++|+++.++..+|.+ ..+|        .+..|+  ..+.+++..+|++....   
T Consensus        76 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g--------~~~~A~--~~~~~al~~~p~~~~~~~~~  145 (259)
T d1xnfa_          76 YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG--------RDKLAQ--DDLLAFYQDDPNDPFRSLWL  145 (259)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTCHHHHHHH
T ss_pred             hhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHh--------hHHHHH--HHHHHHHhhccccHHHHHHH
Confidence            589999999999999999999999999999999999999 9999        667777  88888888888755320   


Q ss_pred             -------CChH----HHHHHHHHhcCcchhhh----------------------------HHHhHHHHHHHHHHHHhcCH
Q psy3020          78 -------SDPS----YVQMIKEIQKDPSLMTL----------------------------EAKISLLKDKGNAALQANNF  118 (150)
Q Consensus        78 -------~~~~----~~~~~~~l~~~~~~~~~----------------------------~~~~~~~~~~g~~~~~~~~~  118 (150)
                             ....    +..........+.....                            +....+|..+|.++...|++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~  225 (259)
T d1xnfa_         146 YLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL  225 (259)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCH
Confidence                   0000    00000111111000000                            12267888999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCcchh
Q psy3020         119 KEAIEAYSEAIKLDGTNHILF  139 (150)
Q Consensus       119 ~~A~~~~~~al~~~p~~~~~~  139 (150)
                      ++|+++|+++++.+|++...|
T Consensus       226 ~~A~~~~~~al~~~p~~~~~~  246 (259)
T d1xnfa_         226 DSATALFKLAVANNVHNFVEH  246 (259)
T ss_dssp             HHHHHHHHHHHTTCCTTCHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHH
Confidence            999999999999999876444

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.6e-13  Score=97.44  Aligned_cols=110  Identities=15%  Similarity=0.151  Sum_probs=97.7

Q ss_pred             ChhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCC
Q psy3020           1 MTTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSD   79 (150)
Q Consensus         1 ~~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~   79 (150)
                      +.+|..+++.|+|++|++.|+++++.+|+++.++..+|.+ ..+|        ++.+|+  ..+.+++..+|++      
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~--------~~~~A~--~~~~~al~~~p~~------   66 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCR--------RLDRSA--HFSTLAIKQNPLL------   66 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHhCCCC------
Confidence            4689999999999999999999999999999999999999 9999        677888  7777777777754      


Q ss_pred             hHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          80 PSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        80 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                                            +.+|..+|.++...|++++|++.+.+++..+|.+...+...+.....
T Consensus        67 ----------------------~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (388)
T d1w3ba_          67 ----------------------AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVA  113 (388)
T ss_dssp             ----------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             ----------------------HHHHHHHHHHhhhhccccccccccccccccccccccccccccccccc
Confidence                                  67899999999999999999999999999999998887776665543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.4e-14  Score=83.75  Aligned_cols=46  Identities=17%  Similarity=0.108  Sum_probs=42.9

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHH
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFA  147 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~  147 (150)
                      +.++.++|.++++.|++++|+++|+++|+++|+++.++.|++.+.-
T Consensus        46 ~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~   91 (95)
T d1tjca_          46 VSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEY   91 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence            6778999999999999999999999999999999999999987654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.41  E-value=4.3e-13  Score=86.15  Aligned_cols=111  Identities=11%  Similarity=0.073  Sum_probs=85.8

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcH------------HHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhcc
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNE------------QMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQL   69 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~------------~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~   69 (150)
                      .|..++..|+|++|+..|++||++.|+++            .++..+|.+ ..+|        .+.+++  ..+.+.+.+
T Consensus        15 ~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg--------~~~~A~--~~~~~al~~   84 (156)
T d2hr2a1          15 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR--------SFDEAL--HSADKALHY   84 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcC--------ccchhh--Hhhhhhhhc
Confidence            47888999999999999999999998753            567889999 9999        667777  777777766


Q ss_pred             CCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhh
Q psy3020          70 DPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFS  140 (150)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  140 (150)
                      .|+.........           +      ....++.++|.++...|++++|+++|.+|+++.|+......
T Consensus        85 ~~~~~~~~~~~~-----------~------~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~  138 (156)
T d2hr2a1          85 FNRRGELNQDEG-----------K------LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETP  138 (156)
T ss_dssp             HHHHCCTTSTHH-----------H------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred             cccccccccccc-----------c------hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHH
Confidence            554333211000           0      11567899999999999999999999999999987655443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=2.7e-12  Score=91.22  Aligned_cols=140  Identities=8%  Similarity=-0.156  Sum_probs=100.2

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhh-CC-------------------
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLF-SD-------------------   60 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~-~~-------------------   60 (150)
                      .+|.++...+++++|+..++++++++|++..++..+|.+ ..+|+.+ ++...+..++ ..                   
T Consensus       149 ~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~a  227 (334)
T d1dcea1         149 RRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP-DSGPQGRLPENVLLKELELVQNAFFTDPNDQS  227 (334)
T ss_dssp             HHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCC-CSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSH
T ss_pred             HHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHH-HHHHHHHHhHHhHHHHHHHHHHHHHhcchhHH
Confidence            357888999999999999999999999999999999999 9999776 3332222211 00                   


Q ss_pred             -hHHHHhhccCCCCCCCCCC-h-------HHHHHH----HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHH
Q psy3020          61 -PNIFVQLQLDPRTKPFLSD-P-------SYVQMI----KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSE  127 (150)
Q Consensus        61 -~~~~~~l~~~~~~~~~~~~-~-------~~~~~~----~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~  127 (150)
                       ..+.+.+..+|........ .       .+...+    ..+..+|..      ..+|..+|.++...|++++|+++|++
T Consensus       228 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~~~~~eA~~~~~~  301 (334)
T d1dcea1         228 AWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWC------LLTIILLMRALDPLLYEKETLQYFST  301 (334)
T ss_dssp             HHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHH------HHHHHHHHHHHCTGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchH------HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence             1122333444444432221 0       111111    223344433      89999999999999999999999999


Q ss_pred             HHhhcCCCcchhhcHHHHHHh
Q psy3020         128 AIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus       128 al~~~p~~~~~~~n~a~~~~~  148 (150)
                      ++++||+.+..|.+++.++.-
T Consensus       302 ai~ldP~~~~y~~~L~~~~~~  322 (334)
T d1dcea1         302 LKAVDPMRAAYLDDLRSKFLL  322 (334)
T ss_dssp             HHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHHHCcccHHHHHHHHHHHhH
Confidence            999999999999999888763

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.31  E-value=6e-12  Score=82.92  Aligned_cols=83  Identities=10%  Similarity=0.024  Sum_probs=73.7

Q ss_pred             cHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHH
Q psy3020          30 NEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDK  108 (150)
Q Consensus        30 ~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  108 (150)
                      +++.+...|.. ...|        ++.+|+  ..+.+++.++|++                            +.+|.++
T Consensus         3 ~a~~l~~~Gn~~~~~g--------~~~~Ai--~~~~kal~~~p~~----------------------------~~~~~~l   44 (201)
T d2c2la1           3 SAQELKEQGNRLFVGR--------KYPEAA--ACYGRAITRNPLV----------------------------AVYYTNR   44 (201)
T ss_dssp             CHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCSCC----------------------------HHHHHHH
T ss_pred             hHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHhCCCC----------------------------HHHHHhH
Confidence            45566778888 8888        788888  8888888888864                            7889999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhcC
Q psy3020         109 GNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKAI  150 (150)
Q Consensus       109 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~~  150 (150)
                      |.++.+.|+|++|+.+|++|++++|+++.+|+++|.+|..+.
T Consensus        45 g~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~   86 (201)
T d2c2la1          45 ALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME   86 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence            999999999999999999999999999999999999998763

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.27  E-value=9.7e-12  Score=75.46  Aligned_cols=79  Identities=13%  Similarity=-0.008  Sum_probs=68.9

Q ss_pred             HHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHH
Q psy3020          33 MKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNA  111 (150)
Q Consensus        33 a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~  111 (150)
                      .+..+|.+ ...|        ++.+|+  ..+.+++..+|++                            +.+|..+|.+
T Consensus        18 ~~~~~g~~~~~~g--------~~~~A~--~~~~~al~~~p~~----------------------------~~a~~~lg~~   59 (112)
T d1hxia_          18 NPMEEGLSMLKLA--------NLAEAA--LAFEAVCQKEPER----------------------------EEAWRSLGLT   59 (112)
T ss_dssp             CHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHSTTC----------------------------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh--------hhHHHH--HHHhhhccccccc----------------------------chhhhhhhhh
Confidence            34667777 7888        677777  7777777777754                            7899999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         112 ALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       112 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      +...|++++|+.+|+++++++|+++.+|+++|.+|..+
T Consensus        60 ~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          60 QAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            99999999999999999999999999999999999875

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.26  E-value=8.9e-12  Score=88.47  Aligned_cols=110  Identities=15%  Similarity=0.005  Sum_probs=90.9

Q ss_pred             hHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHH
Q psy3020           4 YSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSY   82 (150)
Q Consensus         4 g~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~   82 (150)
                      |..+...|++++|+.+|+++++.+|+++.++..++.+ ..++..      ...+++  ..+.+.+..+|..         
T Consensus        80 ~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~------~~~~a~--~~~~~al~~~~~~---------  142 (334)
T d1dcea1          80 KSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP------NWAREL--ELCARFLEADERN---------  142 (334)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC------CHHHHH--HHHHHHHHHCTTC---------
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccc------cHHHHH--HHHHHHHhhCchh---------
Confidence            4556677789999999999999999999999999988 776643      355666  6777777777743         


Q ss_pred             HHHHHHHhcCcchhhhHHHhHHH-HHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020          83 VQMIKEIQKDPSLMTLEAKISLL-KDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus        83 ~~~~~~l~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                                         ..+| ...|.++...+.+++|+.+++++++++|++..+|+++|.++..+
T Consensus       143 -------------------~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~  191 (334)
T d1dcea1         143 -------------------FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  191 (334)
T ss_dssp             -------------------HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             -------------------hhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence                               3444 46678888899999999999999999999999999999999875

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=3.1e-11  Score=73.67  Aligned_cols=79  Identities=14%  Similarity=0.149  Sum_probs=67.6

Q ss_pred             HHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHH
Q psy3020          34 KEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAA  112 (150)
Q Consensus        34 ~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~  112 (150)
                      +...|.. ...|        .+.+|+  ..+.+++..+|++                            +..|..+|.++
T Consensus         6 l~~~g~~~~~~g--------~~~eAi--~~~~~al~~~p~~----------------------------~~~~~~~a~~~   47 (117)
T d1elwa_           6 LKEKGNKALSVG--------NIDDAL--QCYSEAIKLDPHN----------------------------HVLYSNRSAAY   47 (117)
T ss_dssp             HHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC----------------------------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC--------CHHHHH--HHHHHHHhcCCcc----------------------------hhhhhcccccc
Confidence            3455666 6777        677788  7777777777754                            78899999999


Q ss_pred             HHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhcC
Q psy3020         113 LQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKAI  150 (150)
Q Consensus       113 ~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~~  150 (150)
                      ...|++++|++.|+++++++|+++.+|+++|.++..+.
T Consensus        48 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_          48 AKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             cccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            99999999999999999999999999999999998763

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1e-10  Score=74.89  Aligned_cols=80  Identities=15%  Similarity=0.120  Sum_probs=69.4

Q ss_pred             HHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHH
Q psy3020          33 MKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNA  111 (150)
Q Consensus        33 a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~  111 (150)
                      .+...|.. ...|        ++.+|+  ..+.+++.++|++                            +..|..+|.+
T Consensus        12 ~l~~~gn~~~~~~--------~y~~A~--~~~~~al~~~p~~----------------------------~~~~~~lg~~   53 (159)
T d1a17a_          12 ELKTQANDYFKAK--------DYENAI--KFYSQAIELNPSN----------------------------AIYYGNRSLA   53 (159)
T ss_dssp             HHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHSTTC----------------------------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC--------CHHHHH--HHhhhccccchhh----------------------------hhhhhhhHHH
Confidence            34556667 7777        778888  8888888888864                            7889999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhcC
Q psy3020         112 ALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKAI  150 (150)
Q Consensus       112 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~~  150 (150)
                      ++..|++++|+.+|+++++++|+++.+|+++|.+|..++
T Consensus        54 ~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          54 YLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999998763

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.17  E-value=1.2e-10  Score=75.29  Aligned_cols=63  Identities=13%  Similarity=0.283  Sum_probs=58.7

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTK   74 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~   74 (150)
                      ++|.||.++|+|++|+..|++||+++|+++.++..+|.+ ..+|        .+.+|+  ..+.+++.++|++.
T Consensus        82 nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~--------~~~~A~--~~~~~al~l~p~n~  145 (169)
T d1ihga1          82 NIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLK--------EYDQAL--ADLKKAQEIAPEDK  145 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTCH
T ss_pred             HHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHcc--------CHHHHH--HHHHHHHHhCCCCH
Confidence            579999999999999999999999999999999999999 9999        778888  89999999999763

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.16  E-value=2.2e-10  Score=74.08  Aligned_cols=64  Identities=19%  Similarity=0.257  Sum_probs=59.6

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKP   75 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~   75 (150)
                      ++|.||..+|+|++|+.+|+++|+++|+++.++..+|.+ ..+|        ++.+|+  ..+.+++.++|++..
T Consensus        69 Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~--------~~~~A~--~~~~~al~l~P~n~~  133 (168)
T d1kt1a1          69 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMN--------EFESAK--GDFEKVLEVNPQNKA  133 (168)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHSCTTCHH
T ss_pred             hHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHhCCCCHH
Confidence            589999999999999999999999999999999999999 9999        788898  999999999998643

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=1.3e-11  Score=92.60  Aligned_cols=42  Identities=10%  Similarity=0.021  Sum_probs=12.6

Q ss_pred             hHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hhhhh
Q psy3020           4 YSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEM   45 (150)
Q Consensus         4 g~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~   45 (150)
                      +......+.|+.|+..|.++++++|++..++..+|.+ ...|+
T Consensus        93 ~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~  135 (497)
T d1ya0a1          93 LFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTH  135 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHTC------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCC
Confidence            3444556777777777777777777777777777776 66663

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.9e-10  Score=73.64  Aligned_cols=64  Identities=23%  Similarity=0.268  Sum_probs=59.6

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKP   75 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~   75 (150)
                      ++|.||.++|+|++|+.++++||+++|+++.++..+|.+ ..+|        ++.+|+  ..+..++.++|++..
T Consensus        67 nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g--------~~~~A~--~~~~~al~l~P~n~~  131 (170)
T d1p5qa1          67 NLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVN--------DFELAR--ADFQKVLQLYPNNKA  131 (170)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCSSCHH
T ss_pred             HHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhh--------hHHHHH--HHHHHHHHhCCCCHH
Confidence            589999999999999999999999999999999999999 9999        788898  999999999997644

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2e-10  Score=71.06  Aligned_cols=80  Identities=13%  Similarity=0.268  Sum_probs=68.0

Q ss_pred             HHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHH
Q psy3020          32 QMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGN  110 (150)
Q Consensus        32 ~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~  110 (150)
                      ..+..+|.. ...|        ++.+|+  ..+.+++.++|++                            +.++.++|.
T Consensus         5 ~~~k~~G~~~~~~~--------~y~~Ai--~~y~~al~~~p~~----------------------------~~~~~~~a~   46 (128)
T d1elra_           5 LKEKELGNDAYKKK--------DFDTAL--KHYDKAKELDPTN----------------------------MTYITNQAA   46 (128)
T ss_dssp             HHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTC----------------------------HHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHhCccc----------------------------HHHHHhHHH
Confidence            345677888 7888        778888  8888888888854                            678999999


Q ss_pred             HHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         111 AALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       111 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      ++++.|+|++|++.|+++|+++|+++..|.++|.+|..+
T Consensus        47 ~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l   85 (128)
T d1elra_          47 VYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (128)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888888877654

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.08  E-value=3.3e-10  Score=72.16  Aligned_cols=64  Identities=17%  Similarity=0.192  Sum_probs=59.9

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKP   75 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~   75 (150)
                      ++|.||..+|++++|+++|++||+++|+++.++..+|.+ ..+|        ++..|+  ..+.+++.++|++..
T Consensus        72 Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg--------~~~~A~--~~~~~al~l~P~n~~  136 (153)
T d2fbna1          72 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFG--------FLEEAK--ENLYKAASLNPNNLD  136 (153)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT--------CHHHHH--HHHHHHHHHSTTCHH
T ss_pred             hHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcC--------CHHHHH--HHHHHHHHhCCCCHH
Confidence            589999999999999999999999999999999999999 9999        778888  999999999998644

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=99.06  E-value=5.9e-10  Score=77.20  Aligned_cols=127  Identities=12%  Similarity=0.188  Sum_probs=95.6

Q ss_pred             hHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHH
Q psy3020           4 YSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSY   82 (150)
Q Consensus         4 g~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~   82 (150)
                      +.-.+..|++++|+..|+++++.+|+|+.++..++.+ ...|        ++.+|.  ..+...+.++|+.......  +
T Consensus         3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G--------~~e~A~--~~l~~a~~l~P~~~~~~~~--l   70 (264)
T d1zbpa1           3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDG--------DFERAD--EQLMQSIKLFPEYLPGASQ--L   70 (264)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHT--------CHHHHH--HHHHHHHHHCGGGHHHHHH--H
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC--------CHHHHH--HHHHHHHHhCCCcHHHHHH--H
Confidence            3456778999999999999999999999999999999 9999        778888  8999999999987653210  1


Q ss_pred             HHHHHH-------Hh--cCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcH
Q psy3020          83 VQMIKE-------IQ--KDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNR  142 (150)
Q Consensus        83 ~~~~~~-------l~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~  142 (150)
                      ...+..       +.  ..+.....+.....+...+..+...|++++|.+.+.++.+..|+.+..+...
T Consensus        71 ~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~~~  139 (264)
T d1zbpa1          71 RHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLANDT  139 (264)
T ss_dssp             HHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEETTE
T ss_pred             HHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccccc
Confidence            111110       00  0111111123467777889999999999999999999999999988776543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=1.1e-10  Score=87.43  Aligned_cols=107  Identities=11%  Similarity=-0.037  Sum_probs=78.8

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCCh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDP   80 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~   80 (150)
                      .+|..+...|++++|+..|.++++++|.  .++..+|.+ +..|        ++.+|.  ..+.+++.++|++       
T Consensus       125 ~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~~~--------~~~~A~--~~y~~A~~l~P~~-------  185 (497)
T d1ya0a1         125 QLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRN--------QTSQAE--SYYRHAAQLVPSN-------  185 (497)
T ss_dssp             ------------------CCHHHHHHHH--HHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHCTTB-------
T ss_pred             HhHHHHHhCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHcc--------cHHHHH--HHHHHHHHHCCCc-------
Confidence            4788999999999999999999988875  567788999 8888        677888  8888888888865       


Q ss_pred             HHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020          81 SYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus        81 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                                           ...|.++|.++...|++.+|+.+|.+|+.++|..+.++.|++..+-+
T Consensus       186 ---------------------~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         186 ---------------------GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             ---------------------SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             ---------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence                                 67899999999999999999999999999999999999999988754

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.95  E-value=2e-09  Score=74.95  Aligned_cols=137  Identities=9%  Similarity=0.038  Sum_probs=88.1

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccC------CCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLD------PNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTK   74 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~------p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~   74 (150)
                      ..|.+|...|+|++|+++|.+|+++.      |+-..++..+|.+ ..+|        ++.+|+  ..+.+++.+.+...
T Consensus        42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~--------~~~~A~--~~~~~a~~~~~~~~  111 (290)
T d1qqea_          42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG--------NSVNAV--DSLENAIQIFTHRG  111 (290)
T ss_dssp             HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhC--------CcHHHH--HHHHHhhHHhhhcc
Confidence            36899999999999999999999973      3344678888999 8888        555555  55555554444332


Q ss_pred             CCCCChHHHHHHH-HHhc---Ccchhhh---------------HHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCC
Q psy3020          75 PFLSDPSYVQMIK-EIQK---DPSLMTL---------------EAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTN  135 (150)
Q Consensus        75 ~~~~~~~~~~~~~-~l~~---~~~~~~~---------------~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~  135 (150)
                      ...........+. .+..   ++.....               ......+..+|.++...|+|++|++.|.+++...|.+
T Consensus       112 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~  191 (290)
T d1qqea_         112 QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN  191 (290)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred             cchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccc
Confidence            1100000000110 0101   1111110               0125678889999999999999999999999999988


Q ss_pred             cch-------hhcHHHHHHh
Q psy3020         136 HIL-------FSNRSAAFAK  148 (150)
Q Consensus       136 ~~~-------~~n~a~~~~~  148 (150)
                      +..       +++.+.|++.
T Consensus       192 ~~~~~~~~~~~~~~~~~~l~  211 (290)
T d1qqea_         192 RLSQWSLKDYFLKKGLCQLA  211 (290)
T ss_dssp             TTTGGGHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHH
Confidence            654       3456666543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.90  E-value=1.8e-09  Score=68.08  Aligned_cols=48  Identities=21%  Similarity=0.228  Sum_probs=42.0

Q ss_pred             hHHHHHHHHHHHH----------hcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhc
Q psy3020         102 ISLLKDKGNAALQ----------ANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKA  149 (150)
Q Consensus       102 ~~~~~~~g~~~~~----------~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~  149 (150)
                      +.++..+|.++..          .+.+++|++.|+++++++|+++.+|+|+|.+|..+
T Consensus        31 ~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~   88 (145)
T d1zu2a1          31 ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   88 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHc
Confidence            7788888888864          46668999999999999999999999999999764

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.87  E-value=2e-08  Score=65.48  Aligned_cols=95  Identities=13%  Similarity=0.074  Sum_probs=75.7

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcH----------------------HHHHHHHHH-HhhhhccCCCCCchhhhh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNE----------------------QMKEAIKDV-RNQEMNDMNRGDPFANLF   58 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~----------------------~a~~~l~~~-~~~g~~~~~~~~~~~~a~   58 (150)
                      ..|..+...|++++|++.|.+||.+.|+++                      .++..++.+ ...|        .+.+++
T Consensus        16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g--------~~~~Al   87 (179)
T d2ff4a2          16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACG--------RASAVI   87 (179)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT--------CHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CchHHH
Confidence            468889999999999999999999988653                      244556666 6666        556666


Q ss_pred             CChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHH-------Hhh
Q psy3020          59 SDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEA-------IKL  131 (150)
Q Consensus        59 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a-------l~~  131 (150)
                        ..+.+.+..+|.+                            ...|..++.++...|++.+|++.|.++       +.+
T Consensus        88 --~~~~~al~~~P~~----------------------------e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~  137 (179)
T d2ff4a2          88 --AELEALTFEHPYR----------------------------EPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGI  137 (179)
T ss_dssp             --HHHHHHHHHSTTC----------------------------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSC
T ss_pred             --HHHHHHHHhCCcc----------------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC
Confidence              6666666767643                            788999999999999999999999998       556


Q ss_pred             cCC
Q psy3020         132 DGT  134 (150)
Q Consensus       132 ~p~  134 (150)
                      +|.
T Consensus       138 ~P~  140 (179)
T d2ff4a2         138 DPG  140 (179)
T ss_dssp             CCC
T ss_pred             CcC
Confidence            774

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=1.8e-08  Score=69.96  Aligned_cols=115  Identities=11%  Similarity=0.038  Sum_probs=86.8

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcH-----HHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNE-----QMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF   76 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~-----~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~   76 (150)
                      .|.++...|++++|+..|+++|++.|++.     .++..+|.+ ..+|        ++.+|+  ..+..++.+.+.....
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g--------~~~~A~--~~~~~a~~~~~~~~~~   87 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG--------ELTRSL--ALMQQTEQMARQHDVW   87 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHT--------CHHHHH--HHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCC--------CHHHHH--HHHHHHHHHHHhhcch
Confidence            47889999999999999999999999863     467788999 8999        667777  6666555544432110


Q ss_pred             CCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCC--------cchhhcHHHHHHh
Q psy3020          77 LSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTN--------HILFSNRSAAFAK  148 (150)
Q Consensus        77 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~--------~~~~~n~a~~~~~  148 (150)
                                      +      .....+..++..+...|++..|+..+.+++.+.+..        ...+..+|.++..
T Consensus        88 ----------------~------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~  145 (366)
T d1hz4a_          88 ----------------H------YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA  145 (366)
T ss_dssp             ----------------H------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH
T ss_pred             ----------------H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHH
Confidence                            0      126678889999999999999999999999876543        2355667777664


Q ss_pred             c
Q psy3020         149 A  149 (150)
Q Consensus       149 ~  149 (150)
                      +
T Consensus       146 ~  146 (366)
T d1hz4a_         146 W  146 (366)
T ss_dssp             T
T ss_pred             h
Confidence            3

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=1.5e-08  Score=59.19  Aligned_cols=43  Identities=14%  Similarity=0.143  Sum_probs=39.6

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hhhh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQE   44 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g   44 (150)
                      .+|.++.+.|++++|++.|+++|+++|+++.++..++.+ ..++
T Consensus        51 ~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~~~~l~   94 (95)
T d1tjca_          51 YLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            489999999999999999999999999999999999988 6554

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.65  E-value=9.4e-08  Score=60.50  Aligned_cols=94  Identities=11%  Similarity=-0.034  Sum_probs=69.5

Q ss_pred             HHHHHHH--HHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHH
Q psy3020          31 EQMKEAI--KDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKD  107 (150)
Q Consensus        31 ~~a~~~l--~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  107 (150)
                      ..++..+  |.. ...|        .+.+|+  ..+.+++.+.|+.+.........                ..+..|.+
T Consensus         7 a~a~~~l~~g~~~~~~g--------~y~~Ai--~~y~~Al~i~~~~~~~~~~~~~~----------------~~a~~~~n   60 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAG--------EYDEAA--ANCRRAMEISHTMPPEEAFDHAG----------------FDAFCHAG   60 (156)
T ss_dssp             HHHHHHHHHHHHHHHHT--------CHHHHH--HHHHHHHHHHTTSCTTSCCCHHH----------------HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHhChhhhhhhhcccch----------------hHHHHHHH
Confidence            4455555  555 6667        778888  89999998888776532110100                11678999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhhcCCC-----------cchhhcHHHHHHhcC
Q psy3020         108 KGNAALQANNFKEAIEAYSEAIKLDGTN-----------HILFSNRSAAFAKAI  150 (150)
Q Consensus       108 ~g~~~~~~~~~~~A~~~~~~al~~~p~~-----------~~~~~n~a~~~~~~~  150 (150)
                      +|.++..+|+|++|++.|++++.+.|..           ..+++++|.+|..+.
T Consensus        61 lg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg  114 (156)
T d2hr2a1          61 LAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLG  114 (156)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHH
Confidence            9999999999999999999999987753           336899999998763

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=8.5e-08  Score=58.52  Aligned_cols=68  Identities=4%  Similarity=-0.048  Sum_probs=54.8

Q ss_pred             chhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHH---hcCHHHHHHHHHHHH
Q psy3020          53 PFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQ---ANNFKEAIEAYSEAI  129 (150)
Q Consensus        53 ~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~A~~~~~~al  129 (150)
                      ++.+|.  ..+.+++.++|++                            +.+++++|+++++   .+++.+|++.|++++
T Consensus        14 ~l~~Ae--~~Y~~aL~~~p~~----------------------------~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l   63 (122)
T d1nzna_          14 DLLKFE--KKFQSEKAAGSVS----------------------------KSTQFEYAWCLVRTRYNDDIRKGIVLLEELL   63 (122)
T ss_dssp             HHHHHH--HHHHHHHHHSCCC----------------------------HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHH--HHHHHHHhhCCCC----------------------------HHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            566666  6777777777754                            7889999999976   456678999999999


Q ss_pred             hhcCCC--cchhhcHHHHHHhcC
Q psy3020         130 KLDGTN--HILFSNRSAAFAKAI  150 (150)
Q Consensus       130 ~~~p~~--~~~~~n~a~~~~~~~  150 (150)
                      ..+|++  +.+++++|.+|.+++
T Consensus        64 ~~~~~~~~~~~~~~Lg~~y~~~g   86 (122)
T d1nzna_          64 PKGSKEEQRDYVFYLAVGNYRLK   86 (122)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHTT
T ss_pred             hccCCchHHHHHHHHHHHHHHHh
Confidence            999866  458999999998763

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.48  E-value=1.8e-06  Score=60.00  Aligned_cols=119  Identities=8%  Similarity=-0.039  Sum_probs=79.7

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcH-HHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC---
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNE-QMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL---   77 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~-~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~---   77 (150)
                      .+......|+++.|...|+++|+..|.+. .++...+.. ...|        .+..+.  .-+.+++...|......   
T Consensus       105 ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~--------~~~~ar--~i~~~al~~~~~~~~~~~~~  174 (308)
T d2onda1         105 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE--------GIKSGR--MIFKKAREDARTRHHVYVTA  174 (308)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHH--------CHHHHH--HHHHHHHTSTTCCTHHHHHH
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcC--------ChHHHH--HHHHHHHHhCCCcHHHHHHH
Confidence            45667788889999999999999888764 477888887 7777        445555  55666677777655321   


Q ss_pred             --------CChH-HHHHH-HHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcc
Q psy3020          78 --------SDPS-YVQMI-KEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHI  137 (150)
Q Consensus        78 --------~~~~-~~~~~-~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~  137 (150)
                              .+.. ..... ..+...|..      +..|...+..+...|+++.|...|++|+...|.++.
T Consensus       175 a~~e~~~~~~~~~a~~i~e~~l~~~p~~------~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~  238 (308)
T d2onda1         175 ALMEYYCSKDKSVAFKIFELGLKKYGDI------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE  238 (308)
T ss_dssp             HHHHHHTSCCHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence                    0100 11111 112222222      778888888888899999999999999998876654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.42  E-value=4.7e-07  Score=58.74  Aligned_cols=106  Identities=10%  Similarity=-0.021  Sum_probs=76.2

Q ss_pred             CCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC-CCChH-HHHHHHHHhcCcchhhhHHHhH
Q psy3020          27 DPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF-LSDPS-YVQMIKEIQKDPSLMTLEAKIS  103 (150)
Q Consensus        27 ~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~~~  103 (150)
                      |-+-++++...|.. ...|        +..++.  ..+..++.+.++.... ..... .......+.  +      ....
T Consensus         7 D~~~f~~~~~~g~~~~~~g--------~~e~A~--~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~--~------~~~~   68 (179)
T d2ff4a2           7 DLGRFVAEKTAGVHAAAAG--------RFEQAS--RHLSAALREWRGPVLDDLRDFQFVEPFATALV--E------DKVL   68 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHH--H------HHHH
T ss_pred             cHHHHHHHHHHHHHHHHCC--------CHHHHH--HHHHHHHhhCcccccccCcchHHHHHHHHHHH--H------HHHH
Confidence            33456677777777 7778        667777  7788888887765431 11111 111111111  1      2278


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHhcC
Q psy3020         104 LLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAKAI  150 (150)
Q Consensus       104 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~~~  150 (150)
                      ++..++.++...|++++|+.+++++++++|.+..+|.+++.+|..++
T Consensus        69 a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~G  115 (179)
T d2ff4a2          69 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSD  115 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc
Confidence            89999999999999999999999999999999999999999998753

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.29  E-value=4.9e-06  Score=57.16  Aligned_cols=101  Identities=12%  Similarity=-0.060  Sum_probs=73.5

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcH----HHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCC
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNE----QMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF   76 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~----~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~   76 (150)
                      .+|.++...|++++|...+++++++.|.+.    ..+..++.+ ...|        .+.++.  ..+..++..       
T Consensus       218 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g--------~~~~A~--~~~~~al~~-------  280 (366)
T d1hz4a_         218 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLG--------EFEPAE--IVLEELNEN-------  280 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHH-------
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcC--------CHHHHH--HHHHHHHHH-------
Confidence            357788999999999999999999988653    345667888 7888        455555  333322211       


Q ss_pred             CCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC
Q psy3020          77 LSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT  134 (150)
Q Consensus        77 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  134 (150)
                               .......|      ....++..+|.++...|++++|++.|++|+++.+.
T Consensus       281 ---------~~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         281 ---------ARSLRLMS------DLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             ---------HHHTTCHH------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             ---------HhhcccCh------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence                     11111222      22788999999999999999999999999998764

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.28  E-value=1.6e-06  Score=59.82  Aligned_cols=105  Identities=15%  Similarity=0.040  Sum_probs=75.6

Q ss_pred             hhhHHHHh-hCCHHHHHHHHHHhhccCCC------cHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCC
Q psy3020           2 TTYSCLSY-LGRYKESISTYEEGLKLDPN------NEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRT   73 (150)
Q Consensus         2 ~lg~~~~~-~~~~~~A~~~~~~aL~~~p~------~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~   73 (150)
                      .+|.+|.. .|++++|++.|++|+++.+.      ...++..+|.+ ..+|        .+.+|+  ..+.+.+...+..
T Consensus       122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g--------~y~~A~--~~~~~~~~~~~~~  191 (290)
T d1qqea_         122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG--------QYIEAS--DIYSKLIKSSMGN  191 (290)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--------CHHHHH--HHHHHHHHTTSSC
T ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcC--------hHHHHH--HHHHHHHHhCccc
Confidence            36767754 69999999999999987442      23457788989 8999        778888  7777777777765


Q ss_pred             CCCCCChHHHHHHHHHhcCcchhhhHHHhHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcc
Q psy3020          74 KPFLSDPSYVQMIKEIQKDPSLMTLEAKISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHI  137 (150)
Q Consensus        74 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~  137 (150)
                      .....               ..      ...+...|.++...|++..|.+.+.++++++|..+.
T Consensus       192 ~~~~~---------------~~------~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~  234 (290)
T d1qqea_         192 RLSQW---------------SL------KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD  234 (290)
T ss_dssp             TTTGG---------------GH------HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred             hhhhh---------------hH------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccc
Confidence            43210               00      455677888888999999999999999999997554

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.27  E-value=6.9e-06  Score=56.96  Aligned_cols=123  Identities=4%  Similarity=-0.081  Sum_probs=80.3

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hh-hhhccCCCCCchhhhhCChHHHHhhccCCCCCCC----
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RN-QEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPF----   76 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~-~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~----   76 (150)
                      .+......|++++|.+.|+++++..|.+...+...+.. .. .|        +...+.  ..+..++...|+...+    
T Consensus       140 ~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~--------~~~~a~--~i~e~~l~~~p~~~~~w~~y  209 (308)
T d2onda1         140 YMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK--------DKSVAF--KIFELGLKKYGDIPEYVLAY  209 (308)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSC--------CHHHHH--HHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcc--------CHHHHH--HHHHHHHHhhhhhHHHHHHH
Confidence            45667778999999999999999999999888888776 33 34        344455  5566666667766542    


Q ss_pred             ------CCCh-HHHHHHHH-HhcCcchhhhHHH-hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcch
Q psy3020          77 ------LSDP-SYVQMIKE-IQKDPSLMTLEAK-ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHIL  138 (150)
Q Consensus        77 ------~~~~-~~~~~~~~-l~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~  138 (150)
                            .++. ......+. +...|..   +.+ ...|..........|+.+.+.++++++.++.|+....
T Consensus       210 ~~~~~~~g~~~~aR~~fe~ai~~~~~~---~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~~  277 (308)
T d2onda1         210 IDYLSHLNEDNNTRVLFERVLTSGSLP---PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYEG  277 (308)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHSSSSC---GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTSS
T ss_pred             HHHHHHcCChHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccccc
Confidence                  1110 01111111 2221111   001 3466666666678899999999999999999988664

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.25  E-value=9.3e-06  Score=49.13  Aligned_cols=45  Identities=9%  Similarity=-0.057  Sum_probs=40.1

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHH
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAF  146 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~  146 (150)
                      .+.|+.+|..+++.|+|++|.+++.++|+++|+|..+...+-.+-
T Consensus        73 rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie  117 (124)
T d2pqrb1          73 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE  117 (124)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Confidence            578999999999999999999999999999999998876655543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.95  E-value=1.2e-05  Score=54.95  Aligned_cols=46  Identities=20%  Similarity=-0.026  Sum_probs=43.0

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHH
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFA  147 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~  147 (150)
                      +..+..+|.+++..|++++|++.|+++++++|++...+.+++.++.
T Consensus        30 ~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~   75 (264)
T d1zbpa1          30 ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVK   75 (264)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            7889999999999999999999999999999999999988887764

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.88  E-value=8.7e-06  Score=49.27  Aligned_cols=43  Identities=16%  Similarity=0.073  Sum_probs=37.3

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hhhh
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQE   44 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g   44 (150)
                      .||.+|.++|+|++|+.+++++|+++|+|..+......+ ..+.
T Consensus        78 ~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie~~~~  121 (124)
T d2pqrb1          78 YLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVEDKIQ  121 (124)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHh
Confidence            589999999999999999999999999999997766666 4443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.83  E-value=0.00019  Score=47.99  Aligned_cols=127  Identities=8%  Similarity=-0.042  Sum_probs=72.5

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-HhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCC---
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFL---   77 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~---   77 (150)
                      .||..++..+++++|++.|++|.+.  ++.++...||.+ .....+    ..++..++  .-+......  .++...   
T Consensus         7 ~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~----~~d~~~a~--~~~~~a~~~--~~~~a~~~l   76 (265)
T d1ouva_           7 GLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGV----EKNLKKAA--SFYAKACDL--NYSNGCHLL   76 (265)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSS----CCCHHHHH--HHHHHHHHT--TCHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCc----chhHHHHH--Hhhcccccc--cccchhhcc
Confidence            5899999999999999999999764  689999999988 432211    11344443  222222211  111100   


Q ss_pred             -----------CC-hHHHHHHH-HHhcCcchhhhHHHhHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhcCCCcchhh
Q psy3020          78 -----------SD-PSYVQMIK-EIQKDPSLMTLEAKISLLKDKGNAALQ----ANNFKEAIEAYSEAIKLDGTNHILFS  140 (150)
Q Consensus        78 -----------~~-~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~  140 (150)
                                 .. ......++ ....++        ..+...+|..+..    ......|+..+.+...  +.++..++
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--------~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~  146 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKY--------AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--LNDGDGCT  146 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH--TTCHHHHH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhh--------hhHHHhhcccccCCCcccchhHHHHHHhhhhhc--ccccchhh
Confidence                       00 00111111 111111        4555666666653    5667777777777655  45577788


Q ss_pred             cHHHHHHh
Q psy3020         141 NRSAAFAK  148 (150)
Q Consensus       141 n~a~~~~~  148 (150)
                      ++|.+|..
T Consensus       147 ~L~~~~~~  154 (265)
T d1ouva_         147 ILGSLYDA  154 (265)
T ss_dssp             HHHHHHHH
T ss_pred             hhhhhhcc
Confidence            88888765

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.33  E-value=0.00058  Score=41.22  Aligned_cols=17  Identities=24%  Similarity=0.391  Sum_probs=10.9

Q ss_pred             CCHHHHHHHHHHhhccC
Q psy3020          11 GRYKESISTYEEGLKLD   27 (150)
Q Consensus        11 ~~~~~A~~~~~~aL~~~   27 (150)
                      .++++|++.|+++.+..
T Consensus         7 kd~~~A~~~~~kaa~~g   23 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN   23 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHHCC
Confidence            35667777777776553

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.11  E-value=0.0062  Score=40.28  Aligned_cols=45  Identities=31%  Similarity=0.236  Sum_probs=39.6

Q ss_pred             hHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020         102 ISLLKDKGNAALQ----ANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus       102 ~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                      +.++.++|.++..    ..++++|+..|+++.+..  ++.+++++|.+|..
T Consensus       178 ~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~  226 (265)
T d1ouva_         178 SPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYN  226 (265)
T ss_dssp             HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHT
T ss_pred             cccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHc
Confidence            7888999999886    679999999999999984  68899999999864

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.92  E-value=0.0096  Score=35.50  Aligned_cols=90  Identities=10%  Similarity=-0.000  Sum_probs=60.3

Q ss_pred             hhCCHHHHHHHHHHhhccCCCcHHHHHHHHHHHhhhhccCCCCCchhhhhCChHHHHhhccCCCCCCCCCChHHHHHHHH
Q psy3020           9 YLGRYKESISTYEEGLKLDPNNEQMKEAIKDVRNQEMNDMNRGDPFANLFSDPNIFVQLQLDPRTKPFLSDPSYVQMIKE   88 (150)
Q Consensus         9 ~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~~~~g~~~~~~~~~~~~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   88 (150)
                      ...++++|++.|+++.+.  +++.+...|+.+...|..   ...++.+++  .-+.++..                    
T Consensus        35 ~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~---~~~d~~~A~--~~~~~aa~--------------------   87 (133)
T d1klxa_          35 SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKY---VKKDLRKAA--QYYSKACG--------------------   87 (133)
T ss_dssp             TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSS---SCCCHHHHH--HHHHHHHH--------------------
T ss_pred             cccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccc---cchhhHHHH--HHHhhhhc--------------------
Confidence            446889999999999764  788999999887222211   111344444  22222211                    


Q ss_pred             HhcCcchhhhHHHhHHHHHHHHHHHH----hcCHHHHHHHHHHHHhhcCCC
Q psy3020          89 IQKDPSLMTLEAKISLLKDKGNAALQ----ANNFKEAIEAYSEAIKLDGTN  135 (150)
Q Consensus        89 l~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~A~~~~~~al~~~p~~  135 (150)
                        ...        +.+...+|.++..    ..++.+|++.|++|.+.....
T Consensus        88 --~g~--------~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~~  128 (133)
T d1klxa_          88 --LND--------QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSED  128 (133)
T ss_dssp             --TTC--------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             --cCc--------chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCHH
Confidence              111        6788899998876    579999999999999876643

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.49  E-value=0.084  Score=28.63  Aligned_cols=26  Identities=23%  Similarity=0.346  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHh
Q psy3020         105 LKDKGNAALQANNFKEAIEAYSEAIK  130 (150)
Q Consensus       105 ~~~~g~~~~~~~~~~~A~~~~~~al~  130 (150)
                      +--++..+.+.|+|++||+|+.+|..
T Consensus        11 ~~RrAer~l~~~rydeAIech~kA~~   36 (83)
T d2crba1          11 QSRRADRLLAAGKYEEAISCHRKATT   36 (83)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44567778899999999999988765

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.11  E-value=0.093  Score=28.45  Aligned_cols=21  Identities=29%  Similarity=0.349  Sum_probs=17.2

Q ss_pred             hHHHHhhCCHHHHHHHHHHhh
Q psy3020           4 YSCLSYLGRYKESISTYEEGL   24 (150)
Q Consensus         4 g~~~~~~~~~~~A~~~~~~aL   24 (150)
                      +..+...|+|++||+++++|.
T Consensus        15 Aer~l~~~rydeAIech~kA~   35 (83)
T d2crba1          15 ADRLLAAGKYEEAISCHRKAT   35 (83)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHH
Confidence            456788999999999987765

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.05  E-value=0.61  Score=25.77  Aligned_cols=30  Identities=13%  Similarity=0.285  Sum_probs=22.9

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKL  131 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~  131 (150)
                      +..+...+.-+=..|+|++|+.+|.+++++
T Consensus        15 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~   44 (93)
T d1wfda_          15 AVAVLKRAVELDAESRYQQALVCYQEGIDM   44 (93)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            455566666677889999999999988763

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.20  E-value=3.2  Score=28.34  Aligned_cols=46  Identities=20%  Similarity=0.251  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCCcchhhcHHHHHHh
Q psy3020         103 SLLKDKGNAALQANNFKEAIEAYSEAIKLDGTNHILFSNRSAAFAK  148 (150)
Q Consensus       103 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~n~a~~~~~  148 (150)
                      .........+-..|.+++.+..++.++..++.+...+..++.+|.+
T Consensus       100 d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak  145 (336)
T d1b89a_         100 DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK  145 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHH
Confidence            3344555666678999999999999999888888888888888865

>d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Open three-helical up-and-down bundle
superfamily: Mitochondrial import receptor subunit Tom20
family: Mitochondrial import receptor subunit Tom20
domain: Mitochondrial import receptor subunit Tom20
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.78  E-value=0.28  Score=27.39  Aligned_cols=38  Identities=11%  Similarity=0.202  Sum_probs=32.4

Q ss_pred             hhhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHH
Q psy3020           2 TTYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKD   39 (150)
Q Consensus         2 ~lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~   39 (150)
                      .+|..+...|++++|..+|-.|+.+.|.-......+-.
T Consensus        25 ~lGE~Ll~~G~~~~g~~h~~nAi~Vc~qP~~LL~ilq~   62 (95)
T d1om2a_          25 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQVLQQ   62 (95)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            57899999999999999999999999987776655543

>d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Open three-helical up-and-down bundle
superfamily: Mitochondrial import receptor subunit Tom20
family: Mitochondrial import receptor subunit Tom20
domain: Mitochondrial import receptor subunit Tom20
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.57  E-value=0.74  Score=25.59  Aligned_cols=33  Identities=15%  Similarity=0.296  Sum_probs=29.6

Q ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC
Q psy3020         102 ISLLKDKGNAALQANNFKEAIEAYSEAIKLDGT  134 (150)
Q Consensus       102 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~  134 (150)
                      +..-..+|..+...|++++++.+|.+|+.+-|+
T Consensus        20 Fl~eV~lGE~Ll~~G~~~~g~~h~~nAi~Vc~q   52 (95)
T d1om2a_          20 FLEEIQLGEELLAQGDYEKGVDHLTNAIAVCGQ   52 (95)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcCC
Confidence            556677999999999999999999999999885

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.33  E-value=0.98  Score=32.85  Aligned_cols=43  Identities=14%  Similarity=0.159  Sum_probs=38.8

Q ss_pred             hhHHHHhhCCHHHHHHHHHHhhccCCCcHHHHHHHHHH-Hhhhh
Q psy3020           3 TYSCLSYLGRYKESISTYEEGLKLDPNNEQMKEAIKDV-RNQEM   45 (150)
Q Consensus         3 lg~~~~~~~~~~~A~~~~~~aL~~~p~~~~a~~~l~~~-~~~g~   45 (150)
                      .+...+..|+|.-|.+..+.++..+|+|.+++.-++++ ..+|.
T Consensus       436 ~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~  479 (505)
T d2cfua2         436 QARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGY  479 (505)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            45667788999999999999999999999999999999 88884